Query 024239
Match_columns 270
No_of_seqs 204 out of 1220
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f62_A Geranyltranstransferase 100.0 3.7E-72 1.3E-76 503.3 31.1 265 4-270 30-295 (317)
2 3ts7_A Geranyltranstransferase 100.0 5.3E-72 1.8E-76 503.7 31.6 266 4-270 35-302 (324)
3 3lsn_A Geranyltranstransferase 100.0 6.7E-72 2.3E-76 500.0 31.4 266 4-270 29-296 (304)
4 3p8l_A Geranyltranstransferase 100.0 1.1E-71 3.7E-76 498.0 29.4 264 3-268 34-302 (302)
5 3uca_A Geranyltranstransferase 100.0 2.3E-71 7.9E-76 499.5 28.8 264 4-270 59-324 (324)
6 3p8r_A Geranyltranstransferase 100.0 5.5E-72 1.9E-76 500.5 24.2 267 3-270 34-302 (302)
7 3lom_A Geranyltranstransferase 100.0 2.4E-71 8.1E-76 498.0 28.2 265 3-269 34-302 (313)
8 1rtr_A Geranyltranstransferase 100.0 6.4E-71 2.2E-75 493.9 30.0 267 3-270 26-293 (301)
9 2h8o_A Geranyltranstransferase 100.0 8.3E-71 2.8E-75 498.7 30.4 267 3-270 69-335 (335)
10 1rqj_A Geranyltranstransferase 100.0 1.4E-70 4.6E-75 491.8 29.7 267 4-270 29-299 (299)
11 3pde_A Farnesyl-diphosphate sy 100.0 3.3E-71 1.1E-75 495.6 23.9 265 4-270 33-300 (309)
12 3m0g_A Farnesyl diphosphate sy 100.0 8E-71 2.7E-75 491.6 26.1 261 4-270 27-289 (297)
13 3llw_A Geranyltranstransferase 100.0 4E-69 1.4E-73 483.1 28.7 263 3-269 32-304 (311)
14 3npk_A Geranyltranstransferase 100.0 8E-68 2.7E-72 470.7 28.7 260 4-267 24-284 (291)
15 2ftz_A Geranyltranstransferase 100.0 1E-67 3.6E-72 468.8 25.8 252 3-268 30-284 (284)
16 3oyr_A Trans-isoprenyl diphosp 100.0 5E-66 1.7E-70 469.4 28.7 255 4-269 50-344 (345)
17 2j1p_A Geranylgeranyl pyrophos 100.0 3.3E-65 1.1E-69 455.6 30.0 254 3-270 36-293 (293)
18 3mzv_A Decaprenyl diphosphate 100.0 3E-65 1E-69 464.2 30.3 256 4-270 38-333 (341)
19 1wy0_A Geranylgeranyl pyrophos 100.0 9E-66 3.1E-70 469.0 26.7 261 4-270 31-342 (342)
20 3rmg_A Octaprenyl-diphosphate 100.0 4.9E-65 1.7E-69 461.9 27.1 255 4-270 32-326 (334)
21 4dhd_A Polyprenyl synthetase; 100.0 5.1E-65 1.7E-69 465.5 26.9 255 4-270 30-336 (358)
22 3lmd_A Geranylgeranyl pyrophos 100.0 5.3E-65 1.8E-69 464.4 26.0 255 4-270 59-352 (360)
23 3pko_A Geranylgeranyl pyrophos 100.0 1.7E-64 5.9E-69 458.3 26.0 256 4-270 40-334 (334)
24 3nf2_A Putative polyprenyl syn 100.0 3.5E-64 1.2E-68 458.7 27.1 258 4-269 28-343 (352)
25 3aqb_B Component B of hexapren 100.0 5.4E-64 1.8E-68 454.2 26.9 256 4-270 29-325 (325)
26 3apz_A Geranyl diphosphate syn 100.0 5.8E-64 2E-68 458.1 23.9 256 4-270 33-348 (348)
27 3ipi_A Geranyltranstransferase 100.0 5.8E-64 2E-68 446.9 23.0 248 4-269 27-283 (295)
28 1wmw_A Geranylgeranyl diphosph 100.0 3E-63 1E-67 450.2 26.2 257 4-270 24-330 (330)
29 3lk5_A Geranylgeranyl pyrophos 100.0 2.2E-62 7.7E-67 450.6 26.3 258 6-269 49-372 (380)
30 2q80_A Geranylgeranyl pyrophos 100.0 2.5E-62 8.7E-67 438.4 22.3 250 4-270 10-297 (301)
31 2e8v_A Geranylgeranyl pyrophos 100.0 6.1E-62 2.1E-66 442.9 23.4 222 4-232 25-250 (340)
32 1v4e_A Octoprenyl-diphosphate 100.0 6.3E-61 2.1E-65 428.8 23.9 209 9-232 30-239 (299)
33 2qis_A Farnesyl pyrophosphate 100.0 8.8E-61 3E-65 440.0 25.3 259 4-270 63-374 (374)
34 3tc1_A Octaprenyl pyrophosphat 100.0 7.3E-61 2.5E-65 430.8 23.7 240 12-266 28-307 (315)
35 1yhl_A Farnesyl pyrophosphate 100.0 1.3E-60 4.4E-65 438.1 23.4 258 5-270 34-362 (362)
36 1uby_A FPS, farnesyl diphospha 100.0 2.9E-60 1E-64 435.5 25.3 259 4-270 56-367 (367)
37 2ihi_A Pyrophosphate synthase; 100.0 4.2E-60 1.4E-64 437.2 23.8 257 5-269 66-395 (395)
38 2azj_A Geranylgeranyl pyrophos 100.0 5.9E-60 2E-64 420.2 24.0 239 4-269 35-280 (289)
39 3dyh_A Farnesyl pyrophosphate 100.0 5.7E-60 1.9E-64 436.3 20.9 258 5-270 56-390 (390)
40 3mav_A Farnesyl pyrophosphate 100.0 7E-59 2.4E-63 430.8 23.0 252 6-268 67-390 (395)
41 2q58_A Fragment, farnesyl pyro 100.0 1.9E-59 6.5E-64 430.5 17.9 255 5-269 58-359 (368)
42 2her_A Fragment, farnesyl pyro 100.0 2.6E-59 8.9E-64 427.4 17.9 251 5-268 58-354 (368)
43 3kra_B Geranyl diphosphate syn 100.0 3E-56 1E-60 393.9 24.1 232 3-262 24-258 (274)
44 3qkc_B Geranyl diphosphate syn 100.0 5.8E-54 2E-58 379.2 25.8 229 3-265 29-259 (273)
45 4fp4_A Polyprenyl synthetase; 100.0 4.3E-55 1.5E-59 386.4 13.4 194 4-219 30-226 (285)
46 4hd1_A Squalene synthase HPNC; 96.5 0.19 6.4E-06 43.9 16.9 120 126-254 107-238 (294)
47 3acx_A Dehydrosqualene synthas 95.4 0.23 7.8E-06 43.3 12.7 113 126-256 111-245 (293)
48 3vj8_A Squalene synthase; farn 95.4 0.51 1.7E-05 42.1 15.0 111 128-252 123-255 (343)
49 3kb9_A EPI-isozizaene synthase 94.9 0.35 1.2E-05 43.7 12.5 111 126-248 187-309 (382)
50 1ps1_A Pentalenene synthase; a 93.0 4 0.00014 35.6 15.5 112 126-249 144-268 (337)
51 4fp4_A Polyprenyl synthetase; 89.9 2 6.9E-05 37.2 9.8 66 174-251 66-131 (285)
52 1yyq_A Trichodiene synthase; t 88.7 5.3 0.00018 36.0 12.0 128 15-159 56-188 (374)
53 3rmg_A Octaprenyl-diphosphate 87.3 5 0.00017 35.5 10.8 68 171-250 62-129 (334)
54 3mzv_A Decaprenyl diphosphate 87.2 4.3 0.00015 36.0 10.4 74 166-251 63-136 (341)
55 3m0g_A Farnesyl diphosphate sy 86.3 6.1 0.00021 34.4 10.6 73 166-250 51-125 (297)
56 2ftz_A Geranyltranstransferase 86.3 5.8 0.0002 34.2 10.4 69 171-251 61-131 (284)
57 3nf2_A Putative polyprenyl syn 85.9 3.2 0.00011 37.1 8.8 76 165-252 63-138 (352)
58 1di1_A Aristolochene synthase; 85.5 16 0.00054 31.0 15.3 100 143-248 152-261 (300)
59 4f62_A Geranyltranstransferase 85.4 7.3 0.00025 34.2 10.7 67 172-250 61-129 (317)
60 3lmd_A Geranylgeranyl pyrophos 84.8 3.8 0.00013 36.7 8.7 74 166-251 84-158 (360)
61 3pko_A Geranylgeranyl pyrophos 84.8 7 0.00024 34.5 10.4 70 169-250 68-138 (334)
62 2q80_A Geranylgeranyl pyrophos 84.6 9 0.00031 33.3 10.9 68 172-251 41-108 (301)
63 3aqb_B Component B of hexapren 84.6 6 0.0002 34.8 9.9 73 166-250 54-126 (325)
64 2azj_A Geranylgeranyl pyrophos 83.9 6.1 0.00021 34.2 9.5 73 167-251 60-133 (289)
65 1wmw_A Geranylgeranyl diphosph 83.9 9.3 0.00032 33.6 10.8 73 166-250 49-121 (330)
66 1rtr_A Geranyltranstransferase 83.8 4 0.00014 35.6 8.3 73 30-104 189-273 (301)
67 1v4e_A Octoprenyl-diphosphate 82.7 8 0.00028 33.6 9.8 63 176-250 61-123 (299)
68 2e8v_A Geranylgeranyl pyrophos 82.3 12 0.00041 33.1 10.9 69 172-252 56-124 (340)
69 1wy0_A Geranylgeranyl pyrophos 81.7 5.8 0.0002 35.1 8.6 70 169-250 59-128 (342)
70 1rqj_A Geranyltranstransferase 81.3 17 0.00057 31.5 11.3 73 166-250 54-128 (299)
71 3g4d_A (+)-delta-cadinene synt 80.6 21 0.00072 33.8 12.5 111 126-249 376-500 (554)
72 3lsn_A Geranyltranstransferase 80.3 10 0.00034 33.1 9.5 74 166-251 54-129 (304)
73 3n0f_A Isoprene synthase; terp 80.2 26 0.00091 33.1 13.0 110 127-249 375-498 (555)
74 3m00_A Aristolochene synthase; 79.9 35 0.0012 32.3 13.7 110 127-249 373-495 (550)
75 3uca_A Geranyltranstransferase 79.8 7.9 0.00027 34.1 8.7 73 30-104 222-306 (324)
76 3p8l_A Geranyltranstransferase 79.3 4.9 0.00017 35.1 7.2 72 30-103 197-280 (302)
77 3lom_A Geranyltranstransferase 79.2 15 0.00053 32.0 10.4 73 166-250 60-134 (313)
78 3ts7_A Geranyltranstransferase 79.0 9.3 0.00032 33.6 8.9 71 169-251 63-135 (324)
79 4dhd_A Polyprenyl synthetase; 78.1 7.6 0.00026 34.6 8.2 63 174-248 63-125 (358)
80 2j1p_A Geranylgeranyl pyrophos 77.8 22 0.00075 30.6 10.9 71 168-250 64-136 (293)
81 3pde_A Farnesyl-diphosphate sy 77.8 15 0.00053 32.0 9.9 60 179-250 73-134 (309)
82 3ipi_A Geranyltranstransferase 77.0 2.9 9.9E-05 36.4 5.0 64 174-249 60-123 (295)
83 3bny_A Aristolochene synthase; 76.6 35 0.0012 29.1 15.6 61 143-204 166-227 (320)
84 2h8o_A Geranyltranstransferase 75.3 30 0.001 30.5 11.2 72 167-250 96-169 (335)
85 3llw_A Geranyltranstransferase 74.1 23 0.00077 30.9 10.0 62 176-249 74-137 (311)
86 3v1v_A 2-MIB synthase, 2-methy 74.1 13 0.00045 34.0 8.8 76 127-204 266-346 (433)
87 3npk_A Geranyltranstransferase 74.0 31 0.001 29.8 10.7 64 175-250 59-124 (291)
88 3oyr_A Trans-isoprenyl diphosp 72.7 6.1 0.00021 35.1 6.0 73 166-250 75-147 (345)
89 3p8r_A Geranyltranstransferase 71.4 8.4 0.00029 33.5 6.5 66 37-104 207-284 (302)
90 3kra_B Geranyl diphosphate syn 70.0 11 0.00038 32.2 6.9 74 167-251 51-124 (274)
91 2q58_A Fragment, farnesyl pyro 69.7 17 0.00058 32.4 8.3 58 181-250 100-157 (368)
92 3lk5_A Geranylgeranyl pyrophos 66.9 26 0.00089 31.4 9.0 64 175-250 87-166 (380)
93 2ong_A 4S-limonene synthase; m 66.0 88 0.003 29.3 15.3 109 128-249 367-489 (543)
94 3tc1_A Octaprenyl pyrophosphat 65.9 20 0.00069 31.3 7.8 60 180-251 61-120 (315)
95 3apz_A Geranyl diphosphate syn 63.6 41 0.0014 29.6 9.6 58 181-250 92-149 (348)
96 3qkc_B Geranyl diphosphate syn 60.2 22 0.00076 30.3 6.9 72 166-250 55-126 (273)
97 1n1b_A (+)-bornyl diphosphate 60.0 32 0.0011 32.5 8.5 94 143-249 390-496 (549)
98 2ihi_A Pyrophosphate synthase; 54.2 48 0.0017 29.8 8.4 57 181-249 110-168 (395)
99 2j5c_A 1,8-cineole synthase; t 54.2 81 0.0028 29.8 10.3 108 128-248 394-515 (569)
100 2her_A Fragment, farnesyl pyro 51.9 32 0.0011 30.7 6.8 61 176-248 95-158 (368)
101 3sdr_A Alpha-bisabolene syntha 51.4 68 0.0023 31.8 9.6 109 128-249 637-763 (817)
102 3s9v_A Abietadiene synthase, c 51.0 75 0.0026 31.4 9.8 109 128-249 609-732 (785)
103 3p5p_A Taxadiene synthase; cla 50.3 1E+02 0.0035 30.3 10.5 109 128-249 578-701 (764)
104 3aqb_A Component A of hexapren 37.3 59 0.002 24.8 5.1 32 85-123 72-103 (147)
105 2qis_A Farnesyl pyrophosphate 36.6 99 0.0034 27.4 7.5 20 181-200 109-128 (374)
106 1yhl_A Farnesyl pyrophosphate 36.6 1.2E+02 0.0041 26.7 8.0 56 183-250 85-142 (362)
107 1uby_A FPS, farnesyl diphospha 33.6 1.5E+02 0.0051 26.2 8.2 21 180-200 101-121 (367)
108 3mav_A Farnesyl pyrophosphate 22.7 3.4E+02 0.012 24.0 8.5 46 175-232 101-149 (395)
No 1
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=3.7e-72 Score=503.32 Aligned_cols=265 Identities=49% Similarity=0.745 Sum_probs=225.5
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
|+.+.++++|.+..||||+||.+++++++++|++.+.+.++|++|||||+|||||||||+||+|++|||+||+|++||++
T Consensus 30 ~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~ 109 (317)
T 4f62_A 30 ANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEA 109 (317)
T ss_dssp GHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHH
T ss_pred cHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEAS 163 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~ 163 (270)
+|||+||+|++.||+.+++. .+.+++...+++..+++++|..+++.||.+|+.+.+..+++++|..|+++|||+||++|
T Consensus 110 ~AIlaGD~Ll~~Af~~l~~~-~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a 188 (317)
T 4f62_A 110 TAILAGDALQTFAFELLSNP-TSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKAS 188 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHH
Confidence 99999999999999999986 33456667888999999887678999999999998766899999999999999999999
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHH
Q 024239 164 VVCGVIIGG-GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQ 242 (270)
Q Consensus 164 ~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~ 242 (270)
|++|++++| ++++.++.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++++++|++.++++.++
T Consensus 189 ~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~ 268 (317)
T 4f62_A 189 VRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQ 268 (317)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHhccC
Q 024239 243 ATKELAYFEVSKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 243 a~~~L~~l~~~~~~~L~~l~~~~~~R~~ 270 (270)
|++.|+.||+ .++.|.++++|+++|++
T Consensus 269 A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 269 AIAQISEFGD-KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp HHHHHGGGGG-GGHHHHHHHHHHHC---
T ss_pred HHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 9999999975 57999999999999974
No 2
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=5.3e-72 Score=503.68 Aligned_cols=266 Identities=47% Similarity=0.737 Sum_probs=237.4
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
|+.+.++++|.+..||||+||.+++++++++|++.+.+.++|++|||||++||||||||+||+|++|||+||+|++||++
T Consensus 35 ~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~ 114 (324)
T 3ts7_A 35 PERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEA 114 (324)
T ss_dssp SHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCc-CCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKT-VGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~ 162 (270)
+|||+||+|++.||+.+++.. .+.+++...+++..+++++|..+++.||.+|+.+....+++++|.+|+++|||+||++
T Consensus 115 ~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~ 194 (324)
T 3ts7_A 115 TAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRA 194 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999863 2445666788899999987777899999999999876789999999999999999999
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHH
Q 024239 163 SVVCGVIIGG-GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS 241 (270)
Q Consensus 163 ~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~ 241 (270)
||++|++++| ++++.++.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++++++|++.++++.+
T Consensus 195 a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~ 274 (324)
T 3ts7_A 195 SVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHE 274 (324)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhccC
Q 024239 242 QATKELAYFEVSKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 242 ~a~~~L~~l~~~~~~~L~~l~~~~~~R~~ 270 (270)
+|++.|+.|+++ ++.|.++++|+++|++
T Consensus 275 ~A~~~L~~l~~~-~~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 275 AALESLAGFGPE-ADLLRELARFIIQRQS 302 (324)
T ss_dssp HHHHTTTTCCGG-GHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCcc-HHHHHHHHHHHHhccC
Confidence 999999999764 7899999999999974
No 3
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=6.7e-72 Score=500.01 Aligned_cols=266 Identities=47% Similarity=0.778 Sum_probs=237.7
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
|+.+.++++|.+..||||+||.+++++++++|++.+.+.++|++|||||++||||||||+||+|++|||+||+|++||++
T Consensus 29 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~ 108 (304)
T 3lsn_A 29 LARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEA 108 (304)
T ss_dssp GHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH
T ss_pred cHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCc-CCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKT-VGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~ 162 (270)
+|||+||+|++.||+.+++.. .+.+++...+++..+++++|..+++.||.+|+.+..+.+++++|..|+++|||+||++
T Consensus 109 ~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~ 188 (304)
T 3lsn_A 109 CAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEA 188 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999864 2345666788899999988766799999999999876789999999999999999999
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHH
Q 024239 163 SVVCGVIIGGG-NVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS 241 (270)
Q Consensus 163 ~~~~ga~la~~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~ 241 (270)
||++|++++|+ +++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++++++|++.++++.+
T Consensus 189 ~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~ 268 (304)
T 3lsn_A 189 SVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRD 268 (304)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 88899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhccC
Q 024239 242 QATKELAYFEVSKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 242 ~a~~~L~~l~~~~~~~L~~l~~~~~~R~~ 270 (270)
+|++.|+.|++ .++.|.++++|+++|++
T Consensus 269 ~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 269 QALHALRPFDA-AAEPLRELARYIVERRS 296 (304)
T ss_dssp HHHHHTTTSCG-GGHHHHHHHHHHHC---
T ss_pred HHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 99999999976 57999999999999974
No 4
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-71 Score=497.95 Aligned_cols=264 Identities=39% Similarity=0.616 Sum_probs=233.0
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChh-hHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcC
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDES-LVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFG 81 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~-~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G 81 (270)
.|+.+.++++|.+..||||+||.+++++++++|++.+ .++++|++|||||++|||||||||||+|++|||+||+|++||
T Consensus 34 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G 113 (302)
T 3p8l_A 34 ENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFG 113 (302)
T ss_dssp CCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHC
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcC
Confidence 4678999999999999999999999999999999887 899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHH
Q 024239 82 EPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLE 161 (270)
Q Consensus 82 ~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~ 161 (270)
+++|||+||+|++.||+.+++. +.+++...+++..+++++|..+++.||.+|+.+....+++++|..|+++|||+||+
T Consensus 114 ~~~AIlaGD~Ll~~A~~~l~~~--~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~ 191 (302)
T 3p8l_A 114 EATAILAGDGLLTGAFQLLSLS--QLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIE 191 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHH
Confidence 9999999999999999999984 34566777888999998877789999999999877668999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHH
Q 024239 162 ASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS 241 (270)
Q Consensus 162 ~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~ 241 (270)
+||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++++.+++.++++.+
T Consensus 192 ~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~ 271 (302)
T 3p8l_A 192 FALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLA 271 (302)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccC----CCChHHHHHHHHHHHhc
Q 024239 242 QATKELAYFE----VSKAAPLYHLAKYIVSR 268 (270)
Q Consensus 242 ~a~~~L~~l~----~~~~~~L~~l~~~~~~R 268 (270)
+|++.|+.|| +..++.|.++++|+.+|
T Consensus 272 ~A~~~L~~~~~~~~~~~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 272 EGSAVLEKIKANVPNFSEEHLANLLTQLQLR 302 (302)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHTSCC
T ss_pred HHHHHHHhcccccCChhHHHHHHHHHHHhhC
Confidence 9999999995 55679999999999987
No 5
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2.3e-71 Score=499.53 Aligned_cols=264 Identities=39% Similarity=0.647 Sum_probs=231.0
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
|+.+.++++|.+..||||+||.+++++++++|++.+.+.++|++||+||+||||||||||||+|++|||+||+|++||++
T Consensus 59 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~ 138 (324)
T 3uca_A 59 NKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEA 138 (324)
T ss_dssp CHHHHHHHHHHHHHCCCCHHHHHHHHHHHTTCSCGGGGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHH-HHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRV-VRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLE 161 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~ 161 (270)
+|||+||+|++.||+.+++.. .+++.. .+++..++++.|..+++.||.+|+.+..+ .+++++|.+|+++|||+||+
T Consensus 139 ~AIlaGD~Ll~~A~~~l~~~~--~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~ 216 (324)
T 3uca_A 139 IAVLAGDALLNEAMKILVDYS--LEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIK 216 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHH
Confidence 999999999999999999742 122233 67888888887767899999999999876 58999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHH
Q 024239 162 ASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS 241 (270)
Q Consensus 162 ~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~ 241 (270)
+||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++++++|++.++++.+
T Consensus 217 ~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~ 296 (324)
T 3uca_A 217 ASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITE 296 (324)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhccC
Q 024239 242 QATKELAYFEVSKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 242 ~a~~~L~~l~~~~~~~L~~l~~~~~~R~~ 270 (270)
+|++.|+.|+. .++.|.++++|+++|++
T Consensus 297 ~A~~~L~~l~~-~~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 297 ECIEILSSIKG-NTEPLKVLTMKLLERKF 324 (324)
T ss_dssp HHHHHHHTSSS-CCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHhccC
Confidence 99999999975 45899999999999975
No 6
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=5.5e-72 Score=500.45 Aligned_cols=267 Identities=42% Similarity=0.630 Sum_probs=219.9
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcCh
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGE 82 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~ 82 (270)
.|+.+.++++|.+..||||+||.+++++++++|++.+.+.++|++|||||++||||||||+||+|++|||+||+|++||+
T Consensus 34 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~ 113 (302)
T 3p8r_A 34 QTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDE 113 (302)
T ss_dssp TTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCHHHHCCC--------------
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCc-CCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHH
Q 024239 83 PTAILAGDALLALAFEHVAAKT-VGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLE 161 (270)
Q Consensus 83 ~~Ail~Gd~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~ 161 (270)
++|||+||+|++.||+.+++.. .+.+++...+++..+++++|..+++.||.+|+.+.+..+++++|..|+++|||+||+
T Consensus 114 ~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~ 193 (302)
T 3p8r_A 114 ATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMR 193 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHH
Confidence 9999999999999999999863 111223456788888888776789999999999986668999999999999999999
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHH
Q 024239 162 ASVVCGVIIGG-GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF 240 (270)
Q Consensus 162 ~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~ 240 (270)
+||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++++++|++.++++.
T Consensus 194 ~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 273 (302)
T 3p8r_A 194 CAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLL 273 (302)
T ss_dssp HHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999 78888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHhccC
Q 024239 241 SQATKELAYFEVSKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 241 ~~a~~~L~~l~~~~~~~L~~l~~~~~~R~~ 270 (270)
++|++.|+.||.+ ++.|.++++|+++|++
T Consensus 274 ~~A~~~L~~l~~~-~~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 274 QEALLALEAIPYN-TEHLEEFARYVVERKN 302 (302)
T ss_dssp HHHHHHHTTCSSC-THHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCcc-HHHHHHHHHHHHhccC
Confidence 9999999999764 7899999999999975
No 7
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=2.4e-71 Score=498.00 Aligned_cols=265 Identities=38% Similarity=0.566 Sum_probs=234.9
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcCh
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGE 82 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~ 82 (270)
.|+.+.++++|.+..||||+||.+++++++++|++.+.+.++|++|||||+|||||||||+||+|++|||+||+|++||+
T Consensus 34 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~ 113 (313)
T 3lom_A 34 PAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDE 113 (313)
T ss_dssp CCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcCh
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcCCCCH-HHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHH
Q 024239 83 PTAILAGDALLALAFEHVAAKTVGVST-DRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLL 160 (270)
Q Consensus 83 ~~Ail~Gd~L~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf 160 (270)
++|||+||+|++.||+.+++...+.++ +...+++..+++++|..+++.||.+|+.+..+ .+++++|..|+++|||+||
T Consensus 114 ~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~ 193 (313)
T 3lom_A 114 ATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLI 193 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHH
Confidence 999999999999999999986433334 56778889999988777899999999999866 5899999999999999999
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHH
Q 024239 161 EASVVCGVIIGG--GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEE 238 (270)
Q Consensus 161 ~~~~~~ga~la~--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~ 238 (270)
++||++ ++++| ++++.++.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++++++|++.+++
T Consensus 194 ~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~ 272 (313)
T 3lom_A 194 LACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAV 272 (313)
T ss_dssp HHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHH
T ss_pred HHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHH
Confidence 999999 99999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHhcc
Q 024239 239 LFSQATKELAYFEVSKAAPLYHLAKYIVSRQ 269 (270)
Q Consensus 239 ~~~~a~~~L~~l~~~~~~~L~~l~~~~~~R~ 269 (270)
+.++|++.|+.|++ .++.|.++++|+++|+
T Consensus 273 ~~~~A~~~L~~l~~-~~~~L~~la~~~~~R~ 302 (313)
T 3lom_A 273 HYQIAMDSLRLFGS-KAAALIELTKQLQNRS 302 (313)
T ss_dssp HHHHHHHTTTTTGG-GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHHHHHHhcc
Confidence 99999999999975 3789999999999996
No 8
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=6.4e-71 Score=493.92 Aligned_cols=267 Identities=41% Similarity=0.600 Sum_probs=237.3
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcCh
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGE 82 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~ 82 (270)
.|+.+.++++|.+..||||+||.+++++++++|++.+.++++|++||+||+||||||||||||+|++|||+||+|.+||+
T Consensus 26 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~ 105 (301)
T 1rtr_A 26 MDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGE 105 (301)
T ss_dssp SCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCH
Confidence 35679999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHH
Q 024239 83 PTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 83 ~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~ 162 (270)
++|||+||+|++.||+++++.. ..+++...+++..+++++|..+++.||.+|+.+..+.+++++|..|+++|||+||++
T Consensus 106 ~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~ 184 (301)
T 1rtr_A 106 WTAILAGDALLTKAFELISSDD-RLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTF 184 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHH
Confidence 9999999999999999999852 345567778889999988878899999999998766689999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHH
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQ 242 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~ 242 (270)
||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++++++++.++++.++
T Consensus 185 ~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~ 264 (301)
T 1rtr_A 185 AVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDA 264 (301)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCC-CChHHHHHHHHHHHhccC
Q 024239 243 ATKELAYFEV-SKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 243 a~~~L~~l~~-~~~~~L~~l~~~~~~R~~ 270 (270)
|++.|+.|++ ..++.|.++++|+++|++
T Consensus 265 A~~~L~~l~~~~~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 265 AVDELTQIDEQFNTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp HHHHHHTSCTTSCCHHHHHHHHHHHCC--
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhhc
Confidence 9999999974 457899999999999974
No 9
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=8.3e-71 Score=498.68 Aligned_cols=267 Identities=41% Similarity=0.623 Sum_probs=233.1
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcCh
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGE 82 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~ 82 (270)
.|+.+.++++|.+..||||+||.+++++++++|++.+.++++|++||+||++||||||||+||+|++|||+||+|.+||+
T Consensus 69 ~~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~ 148 (335)
T 2h8o_A 69 RPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDE 148 (335)
T ss_dssp CCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcCh
Confidence 46789999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHH
Q 024239 83 PTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 83 ~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~ 162 (270)
++|||+||+|++.||+++++...+.+++...+++..+++++|..+++.||.+|+.+..+.+++++|.+|+++|||+||++
T Consensus 149 ~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~ 228 (335)
T 2h8o_A 149 ATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRF 228 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHH
Confidence 99999999999999999998633456667778899999998877899999999988655689999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHH
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQ 242 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~ 242 (270)
||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++++++++.++++.++
T Consensus 229 a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~ 308 (335)
T 2h8o_A 229 ACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAE 308 (335)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHhccC
Q 024239 243 ATKELAYFEVSKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 243 a~~~L~~l~~~~~~~L~~l~~~~~~R~~ 270 (270)
|++.|+.|++ .++.|.++++|+++|++
T Consensus 309 A~~~L~~l~~-~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 309 ASELLAPYGE-KAAILIAAARFIAERKS 335 (335)
T ss_dssp HHHHTGGGGG-GGHHHHHHHHHHHC---
T ss_pred HHHHHHhCch-hHHHHHHHHHHHHhccC
Confidence 9999999975 67899999999999974
No 10
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=1.4e-70 Score=491.81 Aligned_cols=267 Identities=45% Similarity=0.665 Sum_probs=250.9
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
|+.+.++++|.+..||||+||.+++++++++|++.+.+.++|++||+||++|||||||||||+|++|||+||+|.+||++
T Consensus 29 ~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~ 108 (299)
T 1rqj_A 29 NTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEA 108 (299)
T ss_dssp TSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChH
Confidence 67899999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCc-CCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKT-VGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~ 162 (270)
+|||+||+|++.||+++++.. .+.+++...+++..+++++|..+++.||.+|+.+..+.+++++|..|+++|||+||++
T Consensus 109 ~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~ 188 (299)
T 1rqj_A 109 NAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRA 188 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999842 2456667788899999888777899999999998766689999999999999999999
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHH
Q 024239 163 SVVCGVII-GGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS 241 (270)
Q Consensus 163 ~~~~ga~l-a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~ 241 (270)
||++|+++ +|++++..+.+++||.++|++|||+||++|++++++.+||+.|+|+++||+|||++++++++++.++++.+
T Consensus 189 ~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~ 268 (299)
T 1rqj_A 189 AVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCC-C-ChHHHHHHHHHHHhccC
Q 024239 242 QATKELAYFEV-S-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 242 ~a~~~L~~l~~-~-~~~~L~~l~~~~~~R~~ 270 (270)
+|++.|+.|+. + .++.|.++++|+++|++
T Consensus 269 ~A~~~L~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 269 DARQSLKQLAEQSLDTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhccC
Confidence 99999999954 3 57899999999999974
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=3.3e-71 Score=495.56 Aligned_cols=265 Identities=38% Similarity=0.567 Sum_probs=236.3
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcC
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLV--MPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFG 81 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~--~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G 81 (270)
|+.+.++++|.+..||||+||.+++++++++|++.+.+ .++|++|||||++|||||||||||+|++|||+||+|++||
T Consensus 33 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G 112 (309)
T 3pde_A 33 DAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFG 112 (309)
T ss_dssp CHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHC
T ss_pred cHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHhHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcC
Confidence 67899999999999999999999999999999998888 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHH
Q 024239 82 EPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLE 161 (270)
Q Consensus 82 ~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~ 161 (270)
+++|||+||+|++.||+.+++. +.+++...+++..+++++|..+++.||.+|+.+....+++++|.+|+++|||+||+
T Consensus 113 ~~~AIlaGD~Ll~~Af~~l~~~--~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~ 190 (309)
T 3pde_A 113 AGMATLAGDGLLTLAFQWLTAT--DLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLH 190 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSS--SCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHH
Confidence 9999999999999999999974 34566777888999998877789999999999987678999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHH
Q 024239 162 ASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS 241 (270)
Q Consensus 162 ~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~ 241 (270)
+||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++++.+++.++++++
T Consensus 191 ~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~ 270 (309)
T 3pde_A 191 YAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIH 270 (309)
T ss_dssp HHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCC-ChHHHHHHHHHHHhccC
Q 024239 242 QATKELAYFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 242 ~a~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
+|.+.|+.++.. ..+.|.++++|+++|++
T Consensus 271 ~a~~~l~~~~~~~~~~~L~~l~~~~~~r~~ 300 (309)
T 3pde_A 271 SGQAALQGLPTSTQRDDLAAFFSYFDTERV 300 (309)
T ss_dssp HHHHHHHTSCCCHHHHHHHGGGGGSCTTTT
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHhhc
Confidence 999999995332 11229999999999974
No 12
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=8e-71 Score=491.58 Aligned_cols=261 Identities=39% Similarity=0.628 Sum_probs=222.4
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
|+.+.++++|. ..||||+||.+++++++++|++.+.+.++|++|||||++||||||||+||+|++|||+||+|++||++
T Consensus 27 ~~~l~~~~~y~-~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~ 105 (297)
T 3m0g_A 27 AGDLRDAMAYA-AQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDA 105 (297)
T ss_dssp CSHHHHHHHHH-HSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH
T ss_pred cHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChH
Confidence 67899999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcC--CCCCCHHHHHHHHhhchHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSE--GKDVSLSELEYIHVHKTAKLLE 161 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~--~~~~~~~~~~~i~~~KTg~lf~ 161 (270)
+|||+||+|++.||+.+++.... +++...+++..+++++|..+++.||.+|+.+. ...+++++|..|+++|||+||+
T Consensus 106 ~AIlaGD~Ll~~a~~~l~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~ 184 (297)
T 3m0g_A 106 TAVLAGDALQTLAFELCTDPVLG-SAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALIS 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGC-CHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHH
Confidence 99999999999999999985322 45667788899999888788999999999987 4458999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHH
Q 024239 162 ASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS 241 (270)
Q Consensus 162 ~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~ 241 (270)
+||++|++++|++++ .+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++++++|++.++++.+
T Consensus 185 ~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~ 261 (297)
T 3m0g_A 185 FAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVA 261 (297)
T ss_dssp HHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhccC
Q 024239 242 QATKELAYFEVSKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 242 ~a~~~L~~l~~~~~~~L~~l~~~~~~R~~ 270 (270)
+|++.|+.|+++ .+.|.++++|+++|++
T Consensus 262 ~A~~~L~~~~~~-~~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 262 EAEAALAPYGEA-ASTLRACARYVIERDK 289 (297)
T ss_dssp HHHHHTGGGGGG-GHHHHHHHHHHTC---
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHhcc
Confidence 999999999754 4899999999999974
No 13
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=4e-69 Score=483.15 Aligned_cols=263 Identities=34% Similarity=0.511 Sum_probs=231.5
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCCh------hhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccch
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDE------SLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTN 76 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~------~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~ 76 (270)
.|+.+.++++|.+..||||+||.+++++++++|++. +.+.++|++|||||++||||||||+||+|++|||+||+
T Consensus 32 ~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~ 111 (311)
T 3llw_A 32 FHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTL 111 (311)
T ss_dssp SCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECH
T ss_pred CcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHHHHHCCccccCCCcccCCCCch
Confidence 367899999999999999999999999999999988 88999999999999999999999999999999999999
Q ss_pred hhhcChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhch
Q 024239 77 HKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKT 156 (270)
Q Consensus 77 ~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KT 156 (270)
|++||+.+|||+||+|++.||+.+++. ..+++...+++..++++.|..+++.||.+|+.+.+..+++++|..|+++||
T Consensus 112 h~~~G~~~AIlaGD~Ll~~Af~~l~~~--~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KT 189 (311)
T 3llw_A 112 HAKYDETTAVLIGDALNTYSFELLSNA--LLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKT 189 (311)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHS--CSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCHHHHHHHHHHhH
Confidence 999999999999999999999999982 335667788889999987668899999999998866689999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHH
Q 024239 157 AKLLEASVVCGVIIGGGNVIEI-ERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKF 235 (270)
Q Consensus 157 g~lf~~~~~~ga~la~~~~~~~-~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~ 235 (270)
|+||++||++|++++|++++.+ +.+++||.++|+||||+||++|++++++.+||+.++ ++||+|||++++++.+++.
T Consensus 190 g~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~T~p~l~~l~~a~~~ 267 (311)
T 3llw_A 190 AKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKNSFVNLLGLERANNY 267 (311)
T ss_dssp HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCSCHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcchHHHHHHHHHHHHH
Confidence 9999999999999999998888 899999999999999999999999999999999776 9999999999999999999
Q ss_pred HHHHHHHHHHHhhccCC--CC-hHHHHHHHHHHHhcc
Q 024239 236 AEELFSQATKELAYFEV--SK-AAPLYHLAKYIVSRQ 269 (270)
Q Consensus 236 ~~~~~~~a~~~L~~l~~--~~-~~~L~~l~~~~~~R~ 269 (270)
+++++++|.+.|+.|+. .. .+.|+++++|+++|.
T Consensus 268 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 268 AQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFKGE 304 (311)
T ss_dssp HHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHhcc
Confidence 99999999999999542 23 578999999999996
No 14
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=8e-68 Score=470.71 Aligned_cols=260 Identities=37% Similarity=0.508 Sum_probs=226.4
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCC-hhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcCh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGD-ESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGE 82 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~-~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~ 82 (270)
++.+.++++|.+..||||+||.+++++++++|++ .+.+.++|++|||||+||||||||||||+|++|||+||+|++||+
T Consensus 24 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~ 103 (291)
T 3npk_A 24 HPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDE 103 (291)
T ss_dssp CSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCH
T ss_pred cHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCH
Confidence 5689999999999999999999999999999987 578999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHH
Q 024239 83 PTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 83 ~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~ 162 (270)
++|||+||+|++.||+.+++. ..+++...+++..++++.|..+++.||.+|+.+....++.++|.+|+++|||+||++
T Consensus 104 ~~AIlaGD~Ll~~A~~~l~~~--~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~ 181 (291)
T 3npk_A 104 TTAILVGDALNTEAFLVLSHA--HLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAA 181 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS--SSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHH
Confidence 999999999999999999874 335666778888888886668999999999998766689999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHH
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQ 242 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~ 242 (270)
||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.+.| +||+|||++++++.+++.+++++++
T Consensus 182 a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p~l~~l~~a~~~~~~~~~~ 259 (291)
T 3npk_A 182 ALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFVNLLGLEQAIKTKENLLNE 259 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999776 9999999999999999999999999
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHh
Q 024239 243 ATKELAYFEVSKAAPLYHLAKYIVS 267 (270)
Q Consensus 243 a~~~L~~l~~~~~~~L~~l~~~~~~ 267 (270)
|.+.|+.|+.+..+.|+++++|-.+
T Consensus 260 a~~~l~~~~~~~~~~l~~la~~~~~ 284 (291)
T 3npk_A 260 CEQDLEKLNEKLAQMIQNLIIQYLE 284 (291)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHh
Confidence 9999999975437889999988654
No 15
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-67 Score=468.75 Aligned_cols=252 Identities=32% Similarity=0.493 Sum_probs=223.3
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcCh
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGE 82 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~ 82 (270)
.|+.+.++++|.+..||||+||.+++++++++|++++.+.++|++||+||+||||||||||||+|++|||+||+|.+||+
T Consensus 30 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~ 109 (284)
T 2ftz_A 30 WDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGE 109 (284)
T ss_dssp SCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCH
T ss_pred CCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCH
Confidence 36789999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC--CCCHHHHHHHHhhchHHHH
Q 024239 83 PTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK--DVSLSELEYIHVHKTAKLL 160 (270)
Q Consensus 83 ~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~--~~~~~~~~~i~~~KTg~lf 160 (270)
++|||+||+|++.|++.+++.. +. +++..+++++ .+++.||.+|+.+..+ .+++++|..|+++|||+||
T Consensus 110 ~~AIl~GD~Ll~~a~~~l~~~~----~~---~~~~~l~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~ 180 (284)
T 2ftz_A 110 DIALLAGDGLFFLAFSQISXIG----NS---XIFEEFSETA--YXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALF 180 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----CH---HHHHHHHHHH--HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC----hH---HHHHHHHHHH--HHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHH
Confidence 9999999999999999999852 22 4556666666 7899999999988654 5899999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHH
Q 024239 161 EASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF 240 (270)
Q Consensus 161 ~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~ 240 (270)
++||++|++++|++++ .+++||.++|+||||+||++|++++++.+||+.|+|++ |+|||++++++++++.++++.
T Consensus 181 ~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~~l~~a~~~a~~~~ 255 (284)
T 2ftz_A 181 AFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXVGIQXAREMADXYY 255 (284)
T ss_dssp HHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHHHHHHHHHHHHHHH
Confidence 9999999999998776 89999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhccCCCChHH-HHHHHHHHHhc
Q 024239 241 SQATKELAYFEVSKAAP-LYHLAKYIVSR 268 (270)
Q Consensus 241 ~~a~~~L~~l~~~~~~~-L~~l~~~~~~R 268 (270)
++|++.|+.|++..++. |.++++++++|
T Consensus 256 ~~A~~~L~~l~~~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 256 EEVLXGIESEGLFRTLFLLXELXQMVEER 284 (284)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHcC
Confidence 99999999997534677 99999999987
No 16
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=5e-66 Score=469.41 Aligned_cols=255 Identities=34% Similarity=0.514 Sum_probs=207.6
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|.+..||||+||++|+++++++|++.+.++++|++|||||++||||||| ||+|++|||+||+|.+||++
T Consensus 50 ~~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~ 127 (345)
T 3oyr_A 50 VAIIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDV--VDGSQLRRGKVAAHLIWGGA 127 (345)
T ss_dssp STHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTT--C---------CCCSCCTTHH
T ss_pred ChhHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcc--cCCCCCCCCCccHHHhhCHH
Confidence 5678999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~~ 162 (270)
+|||+||||++.||+.+++... . +++..+++++ ..++.||.+|+.+..+ .+++++|..|+.+|||+||++
T Consensus 128 ~AIl~GD~Ll~~a~~~l~~~~~----~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~ 198 (345)
T 3oyr_A 128 QSVLVGDFLFARAFELMVETNS----M---KALEILARAS--RVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAA 198 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC----H---HHHHHHHHHH--HHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCc----H---HHHHHHHHHH--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHH
Confidence 9999999999999999998531 2 3445566666 6799999999998754 389999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhH-------------
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGI------------- 229 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l------------- 229 (270)
||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++++
T Consensus 199 ~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~ 278 (345)
T 3oyr_A 199 ASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWER 278 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHHSCSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhcc
Q 024239 230 -------------------------ENAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQ 269 (270)
Q Consensus 230 -------------------------~~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~ 269 (270)
+++++.++++.++|++.|+.||++ .++.|.++++|+++|+
T Consensus 279 ~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 279 AIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREALEELADFAVSRR 344 (345)
T ss_dssp HCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHHHHHHHHHHHHC-
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Confidence 668889999999999999999765 4689999999999996
No 17
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=3.3e-65 Score=455.57 Aligned_cols=254 Identities=70% Similarity=1.088 Sum_probs=231.7
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcCh
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGE 82 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~ 82 (270)
.|+.+.++++|.+..||||+||.+++++++++|++.+.++++|++||+||+|||||||||+||+|++|||+||+|.+||+
T Consensus 36 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~ 115 (293)
T 2j1p_A 36 EPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGE 115 (293)
T ss_dssp SSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCH
Confidence 35679999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcCC-CCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC---CCCHHHHHHHHhhchHH
Q 024239 83 PTAILAGDALLALAFEHVAAKTVG-VSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK---DVSLSELEYIHVHKTAK 158 (270)
Q Consensus 83 ~~Ail~Gd~L~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~---~~~~~~~~~i~~~KTg~ 158 (270)
++|||+||+|++.|++.+++.... .++..+.+++..+++++|..+++.||.+|+.+... .+++++|.+|+++|||+
T Consensus 116 ~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~ 195 (293)
T 2j1p_A 116 DVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAA 195 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHH
Confidence 999999999999999999985322 45677888888998887767899999999988654 26788999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHH
Q 024239 159 LLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEE 238 (270)
Q Consensus 159 lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~ 238 (270)
||++||++|++++|++++..+.+++||.++|+||||+||++|+++++ |.|+|++++++++++.+++
T Consensus 196 L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--------------K~T~p~l~gle~a~~~a~~ 261 (293)
T 2j1p_A 196 LLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS--------------KLTYPKLMGLEKSREFAEK 261 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------------cccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999764 8999999999999999999
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHhccC
Q 024239 239 LFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 239 ~~~~a~~~L~~l~~~~~~~L~~l~~~~~~R~~ 270 (270)
+.++|++.|+.|+++.++.|.++++++++|++
T Consensus 262 ~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 262 LNTEARDQLLGFDSDKVAPLLALANYIANRQN 293 (293)
T ss_dssp HHHHHHHHTTTSCTTTTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhhcC
Confidence 99999999999976567899999999999975
No 18
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=3e-65 Score=464.16 Aligned_cols=256 Identities=31% Similarity=0.466 Sum_probs=220.7
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|.+..||||+||.+++++++++|++.+.+.++|++||+||+|||||||| ||+|++|||+||+|.+||++
T Consensus 38 ~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI--~D~s~~RRG~pt~h~~~G~~ 115 (341)
T 3mzv_A 38 APRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDV--VDESRQRRGRPTANLLWDNK 115 (341)
T ss_dssp CTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC--------CTTSCCHHHHSCHH
T ss_pred ChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCc--cCCCCCcCCCccHHHhcChH
Confidence 5789999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~~ 162 (270)
.|||+||||+++||+.+++... . +++..+++++ ..++.||.+|+.+..+ .+++++|..|+++|||+||++
T Consensus 116 ~AIl~GD~L~~~a~~~l~~~~~----~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~ 186 (341)
T 3mzv_A 116 SSVLVGDYLFARSFQLMTDTGN----M---RVMEILANAS--AVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSA 186 (341)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCC----H---HHHHHHHHHH--HHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCc----H---HHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHH
Confidence 9999999999999999998531 2 3445556666 6799999999998754 388999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhh--------------
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMG-------------- 228 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~-------------- 228 (270)
||++|++++|++++..+.++.||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++
T Consensus 187 ~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~ 266 (341)
T 3mzv_A 187 ATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKR 266 (341)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ------------------------HHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhccC
Q 024239 229 ------------------------IENAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 229 ------------------------l~~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
++++++.++++.++|++.|+.||++ .++.|.++++|+++|++
T Consensus 267 ~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 267 VIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQMLDDLADYVVERVR 333 (341)
T ss_dssp HTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTGGGC
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccc
Confidence 4678888999999999999999754 46899999999999974
No 19
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=9e-66 Score=469.02 Aligned_cols=261 Identities=38% Similarity=0.552 Sum_probs=242.0
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|++..||||+||.+++++++++|++.+.+.++|++|||||+|||||||| ||+|++|||+||+|.+||++
T Consensus 31 ~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~ 108 (342)
T 1wy0_A 31 PRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDDI--MDMDETRRGKPTVHRIWGVN 108 (342)
T ss_dssp SHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHHHHHH--HHTCCCSTTSCCHHHHHCHH
T ss_pred cHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCc--ccCCCCCCCCCccccccChh
Confidence 6789999999999999999999999999999998888999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~~ 162 (270)
+|||+||+|++.||+.+++.. .+++...+++..+++++ .+++.||.+|+.+..+ ..++++|..|+++|||+||.+
T Consensus 109 ~AIl~GD~L~~~a~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~ 184 (342)
T 1wy0_A 109 MAILAGDLLFSKAFEAVARAE--IPPEKKARVLEVIVKAS--NELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEA 184 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--SCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcc--cCcccHHHHHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999853 45556667888888887 8899999999998765 489999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHH------------
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIE------------ 230 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~------------ 230 (270)
||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++++
T Consensus 185 ~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~ 264 (342)
T 1wy0_A 185 SAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLK 264 (342)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhccC
Q 024239 231 -------------------------------------NAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 231 -------------------------------------~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
++++.++++.++|++.|+.++++ .++.|.++++++++|++
T Consensus 265 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 265 IFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSKARMDLELLAKFIVEREY 342 (342)
T ss_dssp TSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCHHHHHHHHHHHHTTTCC-
T ss_pred HHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccC
Confidence 56778889999999999999754 46899999999999974
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-65 Score=461.86 Aligned_cols=255 Identities=29% Similarity=0.383 Sum_probs=214.4
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|.+..||||+||.+++++++++|++.+.+.++|++||+||+|||||||| ||+|++|||+||+|.+||++
T Consensus 32 ~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI--~D~s~~RRG~pt~h~~~G~~ 109 (334)
T 3rmg_A 32 NALLDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDV--VDESTERRGQLSVNAIFNNK 109 (334)
T ss_dssp CHHHHHHHHHTCC----CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH--HC---------CHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHcCc--cCCCCCcCCCccHHHhcChH
Confidence 6789999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC-CCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKD-VSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~-~~~~~~~~i~~~KTg~lf~~ 162 (270)
.|||+||||++.|++.+++.. ... ++..+++++ ..++.||.+|+.+..+. +++++|..|+++|||+||++
T Consensus 110 ~AIl~GD~L~~~a~~~l~~~~----~~~---~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~ 180 (334)
T 3rmg_A 110 VSVLAGDYLLATSLVHAEQTN----NYE---IIRLVSSLG--QKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAA 180 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CHH---HHHHHHHHH--HHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC----cHH---HHHHHHHHH--HHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHH
Confidence 999999999999999998742 123 344455555 67999999999987653 89999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHh---------------
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLM--------------- 227 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~--------------- 227 (270)
||++|++++|++++..+.++.||.++|+||||+||++|++ +++.+||+.|+|+++||+|||+++
T Consensus 181 ~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~ 259 (334)
T 3rmg_A 181 CAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAF 259 (334)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHH
Confidence 9999999999999999999999999999999999999999 578899999999999999999998
Q ss_pred -----------------------hHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhccC
Q 024239 228 -----------------------GIENAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 228 -----------------------~l~~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
+++++++.++++.++|++.|+.||++ .++.|.++++|+++|.+
T Consensus 260 ~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 260 KVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALRTYLDYVVAREK 326 (334)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC-
T ss_pred HHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Confidence 35667888999999999999999755 46899999999999974
No 21
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=5.1e-65 Score=465.45 Aligned_cols=255 Identities=30% Similarity=0.451 Sum_probs=227.5
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
|+.+.++++|.+..||||+||.+++++++++|++.+.++++|++|||||+|||||||| ||+|++|||+||+|.+||++
T Consensus 30 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI--~D~s~~RRG~pt~h~~~G~~ 107 (358)
T 4dhd_A 30 AEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDI--IDRGDVRRGLPTVRKAFGDN 107 (358)
T ss_dssp CHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHH--HTTCCEETTEECHHHHHCHH
T ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcc--ccCCCCcCCCccHHHhcCHH
Confidence 6789999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcC-----------CC--CCCHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSE-----------GK--DVSLSELEY 150 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~-----------~~--~~~~~~~~~ 150 (270)
+|||+||+|++.|++.+.... ...+++..+++++ ..++.||.+|+.+. .+ .+++++|..
T Consensus 108 ~AIl~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~ 179 (358)
T 4dhd_A 108 AAILVGIWYREAIEEAVLDTP------KPTLFAKEVAEVI--KAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIK 179 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHTSS------SHHHHHHHHHHHH--HHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHH--HHHHHHHHHHHHccccccccccccccCCCCCCHHHHHH
Confidence 999999999999999996531 2334556666666 68999999999986 22 478999999
Q ss_pred HHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCC-cHHHHhhH
Q 024239 151 IHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKA-TYPKLMGI 229 (270)
Q Consensus 151 i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~-T~p~i~~l 229 (270)
|+++|||+||++||++|++++|++++.++.++.||.++|+||||+||++|++++++.+||+.|+|+++||+ |||+++++
T Consensus 180 ~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al 259 (358)
T 4dhd_A 180 MVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVAL 259 (358)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999866
Q ss_pred HH--------------------------------------HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHhccC
Q 024239 230 EN--------------------------------------AKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 230 ~~--------------------------------------a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~~~R~~ 270 (270)
+. +++.++++.++|++.|+.+|+++ .|.++++++++|++
T Consensus 260 ~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~~--~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 260 SHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNNG--TLKELLDFIVAREY 336 (358)
T ss_dssp HHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSCH--HHHHHHHHHTTTTT
T ss_pred HhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHhccc
Confidence 53 67889999999999999997543 99999999999974
No 22
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=5.3e-65 Score=464.43 Aligned_cols=255 Identities=27% Similarity=0.409 Sum_probs=217.6
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhC-CChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcCh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVG-GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGE 82 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g-~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~ 82 (270)
++.+.++++|.+..||||+||.+++++++++| ++.+.++++|++|||||+|||||||| ||+|++|||+||+|.+||+
T Consensus 59 ~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~~~~~~~~~~~~A~avEliH~asLIHDDI--mD~s~~RRG~pt~h~~~G~ 136 (360)
T 3lmd_A 59 EDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLYHDDV--MDEASMRRGVPSANARWDN 136 (360)
T ss_dssp CHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHH--HC-----------CHHHHH
T ss_pred cHHHHHHHHHHHHCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCC--cCCCCCCCCCCcHHhhcCh
Confidence 56899999999999999999999999999998 77888999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHH
Q 024239 83 PTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 83 ~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~ 162 (270)
+.|||+||||++.|++.++++. + +++..+++++ ..++.||++|+.+..+.+++++|..|+++|||+||++
T Consensus 137 ~~AIlaGD~Ll~~A~~~l~~~~----~----~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~ 206 (360)
T 3lmd_A 137 SVAILAGDILLAHASGLMSQLG----T----DTVAHFAETF--GELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIAS 206 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----H----HHHHHHHHHH--HHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC----H----HHHHHHHHHH--HHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999852 2 4455666666 6799999999998765588999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhh--------------
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMG-------------- 228 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~-------------- 228 (270)
||++|++++|++++..+.++.||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++
T Consensus 207 a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~ 286 (360)
T 3lmd_A 207 AGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDI 286 (360)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHcCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHhccC
Q 024239 229 -----------------------IENAKKFAEELFSQATKELAYFEVSK-AAPLYHLAKYIVSRQN 270 (270)
Q Consensus 229 -----------------------l~~a~~~~~~~~~~a~~~L~~l~~~~-~~~L~~l~~~~~~R~~ 270 (270)
++++++.++++.++|++.|+.||+++ ++.|.++++|+++|++
T Consensus 287 l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 287 LTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVKRVG 352 (360)
T ss_dssp CSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcc
Confidence 57788999999999999999997654 6899999999999974
No 23
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1.7e-64 Score=458.25 Aligned_cols=256 Identities=28% Similarity=0.411 Sum_probs=233.0
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCC--ChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcC
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGG--DESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFG 81 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~--~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G 81 (270)
++.+.++++|.+..||||+||.+++++++ +|+ +.+.+.++|++|||||+|||||||| ||+|++|||+||+|.+||
T Consensus 40 ~~~l~~~~~~~~~~gGKrlRp~l~l~~~~-~g~~~~~~~~~~~A~aiEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G 116 (334)
T 3pko_A 40 NQPIHHKILALLKSGGKLLRPGYFYLFST-FGNAATPAQLQAGAAAIEILHVGTLIHDDV--IDDSPTRRGVRTIQMTYG 116 (334)
T ss_dssp CHHHHHHHHHHHHHCCCCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECHHHHHC
T ss_pred ChHHHHHHHHHHhCCCCcHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHhCcc--CCCCCCcCCCccHHHHcC
Confidence 56899999999999999999999999999 675 7788999999999999999999999 999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHH
Q 024239 82 EPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLL 160 (270)
Q Consensus 82 ~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf 160 (270)
+++|||+||+|++.|++.+++... ++ . ++..+++++ ..++.||.+|+.+..+ .+++++|..++++|||+||
T Consensus 117 ~~~AIl~GD~L~~~a~~~l~~~~~--~~-~---~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~ 188 (334)
T 3pko_A 117 QRNAIYAGDFMFTVYFDQVLKSTT--DR-S---LIQNHIDAM--HRILQGELHQMDLNYREDITLDAYLNEIAGKTAELF 188 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC--CH-H---HHHHHHHHH--HHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcCC--CH-H---HHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHH
Confidence 999999999999999999998532 22 2 344555566 6899999999988654 4889999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHH----------
Q 024239 161 EASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIE---------- 230 (270)
Q Consensus 161 ~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~---------- 230 (270)
++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++++
T Consensus 189 ~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l 268 (334)
T 3pko_A 189 ALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLL 268 (334)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred -------------------------HHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhccC
Q 024239 231 -------------------------NAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 231 -------------------------~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
++++.++++.++|++.|+.+|.+ .++.|.++++++++|++
T Consensus 269 ~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 269 KKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp TTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHTTCC-
T ss_pred hcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccC
Confidence 68889999999999999999764 46899999999999974
No 24
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=3.5e-64 Score=458.69 Aligned_cols=258 Identities=31% Similarity=0.466 Sum_probs=233.0
Q ss_pred chHHHHHHHHhh-----------hCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcC
Q 024239 4 PEKIHEAMRYSL-----------LAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRG 72 (270)
Q Consensus 4 ~~~l~~~~~y~~-----------~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg 72 (270)
++.+.++..|.+ ..||||+||++++++++++|++.+.++++|++|||||++||||||| ||+|++|||
T Consensus 28 ~~~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI--~D~s~~RRG 105 (352)
T 3nf2_A 28 APPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRH 105 (352)
T ss_dssp CTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHH--HHTCCEETT
T ss_pred ChHHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCCC
Confidence 557889999988 6899999999999999999999999999999999999999999999 999999999
Q ss_pred ccchhhhcChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHH
Q 024239 73 KPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYI 151 (270)
Q Consensus 73 ~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i 151 (270)
+||+|.+||+++|||+||||++.|++.++++.. + ...+++..+++++ ..++.||++|+.+..+ .+++++|..|
T Consensus 106 ~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~---~-~~~~~~~~~~~~~--~~l~~GQ~~dl~~~~~~~~t~~~y~~~ 179 (352)
T 3nf2_A 106 RDTVWKVHGPAQAILVGDALFALANEVLLELGT---V-EAGRATRRLTKAS--RSLIDGQAQDISYEHRDRVSVEECLEM 179 (352)
T ss_dssp EECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCS---H-HHHHHHHHHHHHH--HHHHHHHHHHHHHTTCSCCCHHHHHHH
T ss_pred CccHHHhcChHHHHHHHHHHHHHHHHHHHhCCC---c-hHHHHHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHH
Confidence 999999999999999999999999999998632 2 2345666777777 7899999999998765 4899999999
Q ss_pred HhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHH-
Q 024239 152 HVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIE- 230 (270)
Q Consensus 152 ~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~- 230 (270)
+.+|||+||++||++|++++|++++.++.++.||.++|+||||+||++|++++++.+||+.|+||++||+|||++++++
T Consensus 180 i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~ 259 (352)
T 3nf2_A 180 EGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAA 259 (352)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988543
Q ss_pred -------------------------------------------HHHHHHHHHHHHHHHHhhccCC-C-ChHHHHHHHHHH
Q 024239 231 -------------------------------------------NAKKFAEELFSQATKELAYFEV-S-KAAPLYHLAKYI 265 (270)
Q Consensus 231 -------------------------------------------~a~~~~~~~~~~a~~~L~~l~~-~-~~~~L~~l~~~~ 265 (270)
++++.++++.++|++.|+.+|+ + .++.|.+|++++
T Consensus 260 ~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~r~~L~~la~~~ 339 (352)
T 3nf2_A 260 GGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADFV 339 (352)
T ss_dssp CSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 3455578899999999999965 3 468999999999
Q ss_pred Hhcc
Q 024239 266 VSRQ 269 (270)
Q Consensus 266 ~~R~ 269 (270)
++|.
T Consensus 340 ~~R~ 343 (352)
T 3nf2_A 340 VVRK 343 (352)
T ss_dssp CC--
T ss_pred Hhcc
Confidence 9986
No 25
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=5.4e-64 Score=454.24 Aligned_cols=256 Identities=29% Similarity=0.434 Sum_probs=233.4
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|.+..||||+||.+++++++++|++.+.+.++|++||++|+|||||||| ||+|++|||+||+|.+||++
T Consensus 29 ~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~ 106 (325)
T 3aqb_B 29 SETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDY--IDNSDMRRGNTSVHIAFDKD 106 (325)
T ss_dssp SHHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECHHHHTCHH
T ss_pred chHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCcc--ccCCCCCCCCCCcccccChH
Confidence 5679999999999999999999999999999988888999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~~ 162 (270)
.|||+||+|++.|++.+++.. .. +++..+++++ .+++.||.+|+.+..+ .+++++|..|+.+|||+||++
T Consensus 107 ~AIl~GD~L~~~a~~~l~~~~----~~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~ 177 (325)
T 3aqb_B 107 TAIRTGHFLLARALQNIATIN----NS---KFHQIFSKTI--LEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEA 177 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTTCC----CH---HHHHHHHHHH--HHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC----hH---HHHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHH
Confidence 999999999999999998852 12 3445556666 6899999999998765 489999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHH----------
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENA---------- 232 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a---------- 232 (270)
||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++++.+
T Consensus 178 ~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~ 257 (325)
T 3aqb_B 178 SCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEA 257 (325)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred -----------------------------HHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHhccC
Q 024239 233 -----------------------------KKFAEELFSQATKELAYFEVSK-AAPLYHLAKYIVSRQN 270 (270)
Q Consensus 233 -----------------------------~~~~~~~~~~a~~~L~~l~~~~-~~~L~~l~~~~~~R~~ 270 (270)
++.++++.++|++.|+.+|.++ ++.|.++++++++|++
T Consensus 258 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 258 VVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp HHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 4556788999999999997654 6799999999999974
No 26
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=5.8e-64 Score=458.09 Aligned_cols=256 Identities=29% Similarity=0.395 Sum_probs=204.3
Q ss_pred chHHHHHHHHhhhCC--CCChHHHHHHHHHHHhCCCh-----------------hhHHHHHHHHHHHHHHHHHHhCCCCC
Q 024239 4 PEKIHEAMRYSLLAG--GKRIRPVLCIASCELVGGDE-----------------SLVMPMACALEMTHTMSLIHDDLPAL 64 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~--GK~lRp~l~l~~~~~~g~~~-----------------~~~~~lA~avElih~asLihDDI~~~ 64 (270)
++.+.++++|.+..| |||+||.+++++++++|++. +.++++|++|||||+|||||||| |
T Consensus 33 ~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi--~ 110 (348)
T 3apz_A 33 VPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDV--L 110 (348)
T ss_dssp CC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhccc--c
Confidence 456899999999877 99999999999999998642 24688999999999999999999 9
Q ss_pred CCCCCCcCccchhhhcChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CC
Q 024239 65 DNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DV 143 (270)
Q Consensus 65 D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~ 143 (270)
|+|++|||+||+|.+||++.|||+||||++.|++.++++. .. +++..+++++ ..++.||.+|+.+... .+
T Consensus 111 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~ 181 (348)
T 3apz_A 111 DDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALK----NT---EVVALLATAV--EHLVTGETMEITSSTEQRY 181 (348)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHHHHTT----CH---HHHHHHHHHH--HHHHHHHHHHHTCCHHHHT
T ss_pred CCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCC----CH---HHHHHHHHHH--HHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999852 12 3445555565 7899999999987642 37
Q ss_pred CHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcH
Q 024239 144 SLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223 (270)
Q Consensus 144 ~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~ 223 (270)
++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+||
T Consensus 182 ~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tl 261 (348)
T 3apz_A 182 SMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITA 261 (348)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCH
T ss_pred CHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh---------------------------------hHHHHHHHHHHHHHHHHHHhhccCCC-------ChHHHHHHHH
Q 024239 224 PKLM---------------------------------GIENAKKFAEELFSQATKELAYFEVS-------KAAPLYHLAK 263 (270)
Q Consensus 224 p~i~---------------------------------~l~~a~~~~~~~~~~a~~~L~~l~~~-------~~~~L~~l~~ 263 (270)
|+++ +++++++.++++.++|++.|+.++.+ .++.|.++++
T Consensus 262 p~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~L~~l~~ 341 (348)
T 3apz_A 262 PILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTH 341 (348)
T ss_dssp HHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHH
Confidence 9998 67889999999999999999999764 3689999999
Q ss_pred HHHhccC
Q 024239 264 YIVSRQN 270 (270)
Q Consensus 264 ~~~~R~~ 270 (270)
++++|++
T Consensus 342 ~~~~R~~ 348 (348)
T 3apz_A 342 RVITRNK 348 (348)
T ss_dssp HHHHCCC
T ss_pred HHHhCcC
Confidence 9999974
No 27
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=5.8e-64 Score=446.93 Aligned_cols=248 Identities=28% Similarity=0.444 Sum_probs=217.1
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|.+..||||+||.+++++++++|++.+.+.++|++||+||+|||||||| ||+|++|||+||+|++||++
T Consensus 27 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi--~D~s~~RRG~pt~h~~~G~~ 104 (295)
T 3ipi_A 27 DPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDL--LDQGLVRRNLPSAPEKFGPS 104 (295)
T ss_dssp SHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHH--HHHHTSCTTSCCCCCSSCHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcC--cCCCCCCCCCccHHHhcCcc
Confidence 4679999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEAS 163 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~ 163 (270)
+|||+||+|++.||+.+++.. . +++..+++++ ..++.||.+|+.+....+++++|..++++|||+||++|
T Consensus 105 ~AIlaGD~Ll~~a~~ll~~~~-----~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a 174 (295)
T 3ipi_A 105 GALLCGDYLIAKSIAFISPYG-----E---KVIQDFGKAG--MDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAIS 174 (295)
T ss_dssp HHHHHHHHHHHHHHHHHGGGC-----H---HHHHHHHHHH--HHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHch-----H---HHHHHHHHHH--HHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999998742 2 3445556665 67899999999987666889999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhh--------HHHHHHH
Q 024239 164 VVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMG--------IENAKKF 235 (270)
Q Consensus 164 ~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~--------l~~a~~~ 235 (270)
|++|++++|++++.++.+++||.++|+||||+||++|++++++ | +|+.+||+|||++++ +++|++.
T Consensus 175 ~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--g----kd~~~gk~Tlp~l~al~~~~~~~le~a~~~ 248 (295)
T 3ipi_A 175 ASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--G----KESKFTSETLPHIYMKSTSKEEALKKSIDC 248 (295)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--C----CCcccCcccHHHHHHHhcCchhHHHHHHHH
Confidence 9999999999999999999999999999999999999998763 4 467899999999998 9999999
Q ss_pred HHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhcc
Q 024239 236 AEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQ 269 (270)
Q Consensus 236 ~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~ 269 (270)
++++.++|++.|+.||++ .++.|.++++|++.|.
T Consensus 249 a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 249 VKLHVAAAKETLETFRECPARDKLFQITDYITVDM 283 (295)
T ss_dssp HHHHHHHHHHHHTTSCCSHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 999999999999999764 4689999999998874
No 28
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=3e-63 Score=450.19 Aligned_cols=257 Identities=26% Similarity=0.293 Sum_probs=229.2
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|++..||||+||.+++++++++|++.+.++++|++|||||++||||||| ||+|++|||+||+|.+||++
T Consensus 24 ~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi--~D~s~~RRG~pt~h~~~G~~ 101 (330)
T 1wmw_A 24 DPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDI--EDGSEERRGRPALHRLHPMP 101 (330)
T ss_dssp SHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECHHHHSCHH
T ss_pred cHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccc--ccCCCCCCCCCccccccCch
Confidence 5679999999999999999999999999999999889999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcC-CCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhc-CCC--CCCHHHHHHHHhhchHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTV-GVSTDRVVRAITELGSALGAEGLLKGQVTDLDS-EGK--DVSLSELEYIHVHKTAKL 159 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~-~~~--~~~~~~~~~i~~~KTg~l 159 (270)
.|||+||+|++.|++.+++... +.++. +++..+++++ .+++.||.+|+.+ ..+ .+++++|..|+++|||+|
T Consensus 102 ~AIl~GD~L~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~L 176 (330)
T 1wmw_A 102 LALNAGDAMHAEMWGLLAEGLARGLFPP---EVLLEFHEVV--RRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYY 176 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCH---HHHHHHHHHH--HHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHH---HHHHHHHHHH--HHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHH
Confidence 9999999999999999998531 22223 4455566666 7899999999998 654 489999999999999999
Q ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHH--------
Q 024239 160 -LEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIE-------- 230 (270)
Q Consensus 160 -f~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~-------- 230 (270)
|++||++|++++|++++.. +++||.++|+||||+||++|++++++ +||+.|+|+++||+|||++++++
T Consensus 177 s~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~ 253 (330)
T 1wmw_A 177 TAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTLILLRFLEEAPPEERA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCHHHHHHHHhCCHHHHH
Confidence 9999999999999887766 99999999999999999999999999 99999999999999999998653
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHhh----ccCCC-ChHHHHHHHHHHHhccC
Q 024239 231 --------------------------------NAKKFAEELFSQATKELA----YFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 231 --------------------------------~a~~~~~~~~~~a~~~L~----~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
++++.+++|.++|++.|+ .+|.+ .++.|.++++++++|++
T Consensus 254 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 254 RALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALVERRA 330 (330)
T ss_dssp HHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccC
Confidence 345668888999999999 88654 36889999999999974
No 29
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=2.2e-62 Score=450.64 Aligned_cols=258 Identities=30% Similarity=0.435 Sum_probs=216.9
Q ss_pred HHHHHHHHhhhCCCCChHHHHHHHHHHHhCCC------hhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhh
Q 024239 6 KIHEAMRYSLLAGGKRIRPVLCIASCELVGGD------ESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKV 79 (270)
Q Consensus 6 ~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~------~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~ 79 (270)
.+.+++.|++..||||+||++|+++++++|++ .+.++++|++|||||++||||||| ||+|++|||+||+|++
T Consensus 49 ~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~AaaiEliH~asLIHDDI--mD~s~~RRG~pt~h~~ 126 (380)
T 3lk5_A 49 DAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDI--IDSSDTRRGAPTVHRA 126 (380)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHH--HTC-------------
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHHHHCCC--cCCCCCCCCCcchhHH
Confidence 46788888888999999999999999999874 678999999999999999999999 9999999999999997
Q ss_pred ----------------cChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC-
Q 024239 80 ----------------FGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKD- 142 (270)
Q Consensus 80 ----------------~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~- 142 (270)
||++.|||+||+|+++|++++++. +.+++...+++..++.+. ..++.||++|+.+..+.
T Consensus 127 f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~--~~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~ 202 (380)
T 3lk5_A 127 VEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDS--GLSAEALARTRDAWRGMR--TEVIGGQLLDIYLESHAN 202 (380)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCC
Confidence 599999999999999999999985 335555566666666555 67899999999886543
Q ss_pred CCHHHHHHHHhhchHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCC
Q 024239 143 VSLSELEYIHVHKTAKL-LEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKA 221 (270)
Q Consensus 143 ~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~ 221 (270)
+++++|..|+++|||+| |++||++|++++|++++.++.++.||.++|+||||+||++|++++++.+|||.|+||++||+
T Consensus 203 ~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~ 282 (380)
T 3lk5_A 203 ESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKR 282 (380)
T ss_dssp CCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCC
T ss_pred CCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCc
Confidence 78999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhH----------------------------------------HHHHHHHHHHHHHHHHHhhccCC--CChHHHH
Q 024239 222 TYPKLMGI----------------------------------------ENAKKFAEELFSQATKELAYFEV--SKAAPLY 259 (270)
Q Consensus 222 T~p~i~~l----------------------------------------~~a~~~~~~~~~~a~~~L~~l~~--~~~~~L~ 259 (270)
|||+++++ +++++.++++.++|++.|+.+|. ..++.|.
T Consensus 283 T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~~r~~L~ 362 (380)
T 3lk5_A 283 TVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDEVRAQLR 362 (380)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHH
T ss_pred hHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 99999854 34566688999999999999974 3468999
Q ss_pred HHHHHHHhcc
Q 024239 260 HLAKYIVSRQ 269 (270)
Q Consensus 260 ~l~~~~~~R~ 269 (270)
+|++++..|+
T Consensus 363 ~La~~~~~~~ 372 (380)
T 3lk5_A 363 ALAIRSTERR 372 (380)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhh
Confidence 9999999886
No 30
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=2.5e-62 Score=438.44 Aligned_cols=250 Identities=24% Similarity=0.283 Sum_probs=217.4
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|++..||||+||.+++++++++|++.+.+.++|++||+||+|||||||| ||+|++|||+||+|.+||++
T Consensus 10 ~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~ 87 (301)
T 2q80_A 10 QRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDNSKLRRGFPVAHSIYGIP 87 (301)
T ss_dssp HHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECHHHHHCHH
T ss_pred cHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCCCCcchhhccCcH
Confidence 4678899999999999999999999999999998888999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC--CCCHHHHHHHHhhchHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK--DVSLSELEYIHVHKTAKLLE 161 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~--~~~~~~~~~i~~~KTg~lf~ 161 (270)
.|||+||+|++.|++.+++... + ... ..+++++ ..++.||.+|+.+..+ .+++++|..|+++|||+||+
T Consensus 88 ~AIl~GD~l~~~a~~~l~~~~~---~-~~~---~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~ 158 (301)
T 2q80_A 88 SVINSANYVYFLGLEKVLTLDH---P-DAV---KLFTRQL--LELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFG 158 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC---T-THH---HHHHHHH--HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC---H-HHH---HHHHHHH--HHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHH
Confidence 9999999999999999998632 1 223 3344455 6789999999987433 47899999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHH-----------
Q 024239 162 ASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIE----------- 230 (270)
Q Consensus 162 ~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~----------- 230 (270)
+||++|+++++.++ .+.+||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++++
T Consensus 159 ~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~ 234 (301)
T 2q80_A 159 LAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNI 234 (301)
T ss_dssp HHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHH
Confidence 99999999999763 589999999999999999999999999999999999999999999998543
Q ss_pred -------------------------HHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHhccC
Q 024239 231 -------------------------NAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 231 -------------------------~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~~~R~~ 270 (270)
++++.++++.++|++.|+.++.++ .|+.+++++.+|.+
T Consensus 235 l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~--~L~~l~~~l~~~~~ 297 (301)
T 2q80_A 235 LRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP--ELVALVKHLSKMFK 297 (301)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCC
T ss_pred HhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhc
Confidence 567778899999999999997543 49999999988864
No 31
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=6.1e-62 Score=442.93 Aligned_cols=222 Identities=21% Similarity=0.268 Sum_probs=193.3
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|++..||||+||.+++++++++|++.+.+.++|++||+||+|||||||| ||+|++|||+||+|.+||++
T Consensus 25 ~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDI--~D~s~~RRG~pt~h~~~G~~ 102 (340)
T 2e8v_A 25 ESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDI--EDNAPLRRGQTTSHLIFGVP 102 (340)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECHHHHTCHH
T ss_pred hHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCcc--ccCCCCCCCCcchhhccCch
Confidence 4578999999999999999999999999999998888999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC----CCCHHHHHHHHhhchHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK----DVSLSELEYIHVHKTAKL 159 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~----~~~~~~~~~i~~~KTg~l 159 (270)
.|||+||+|++.|++.++++.. +.+...+++..+++++ ..++.||++|+.+..+ .+++++|..|+++|||+|
T Consensus 103 ~AIl~GD~L~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L 178 (340)
T 2e8v_A 103 STINTANYMYFRAMQLVSQLTT--KEPLYHNLITIFNEEL--INLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGL 178 (340)
T ss_dssp HHHHHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCC--chhhHHHHHHHHHHHH--HHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHH
Confidence 9999999999999999998632 3445556677777777 7899999999987532 368999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHH
Q 024239 160 LEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENA 232 (270)
Q Consensus 160 f~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a 232 (270)
|++||++|++++|+++ ..+.+..||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++++.+
T Consensus 179 ~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 250 (340)
T 2e8v_A 179 FRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFT 250 (340)
T ss_dssp HHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhC
Confidence 9999999999999877 57889999999999999999999999999999999999999999999999876543
No 32
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=6.3e-61 Score=428.85 Aligned_cols=209 Identities=27% Similarity=0.347 Sum_probs=192.4
Q ss_pred HHHHHhhhCCCCChHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHH
Q 024239 9 EAMRYSLLAGGKRIRPVLCIASCELVGG-DESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAIL 87 (270)
Q Consensus 9 ~~~~y~~~~~GK~lRp~l~l~~~~~~g~-~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail 87 (270)
++++|.+..||||+||.+++++++++|+ +.+.+.++|++||++|+|||||||| ||+|++|||+||+|.+||+++|||
T Consensus 30 ~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~A~avEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl 107 (299)
T 1v4e_A 30 EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDV--IDGARFRRGKETINFMYGDKAAVA 107 (299)
T ss_dssp HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECHHHHHCHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCCC--CCCCCCCCCCCchhhhcCHHHHHH
Confidence 8899999999999999999999999998 7788899999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHH
Q 024239 88 AGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCG 167 (270)
Q Consensus 88 ~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~g 167 (270)
+||+|++.|++.+++... . +++..+++++ .+++.||.+|+.+..+.+++++|..|+.+|||+||++||++|
T Consensus 108 ~GD~L~~~a~~~l~~~~~----~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~g 178 (299)
T 1v4e_A 108 AGDLVLVSAFHTVEEIGN----N---KLRRAFLNVI--GKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178 (299)
T ss_dssp HHHHHHHHHHHHHHHHCC----H---HHHHHHHHHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCh----H---HHHHHHHHHH--HHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999998521 2 3445556666 789999999999876558999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHH
Q 024239 168 VIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENA 232 (270)
Q Consensus 168 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a 232 (270)
++++|+++ +.++.||.++|+||||+||++|++++ +.+||+.|+|+++||+|||++++++.+
T Consensus 179 a~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~~~ 239 (299)
T 1v4e_A 179 ALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAMEKF 239 (299)
T ss_dssp HHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHHHC
T ss_pred HHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHHhC
Confidence 99999876 78999999999999999999999999 999999999999999999999876543
No 33
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=8.8e-61 Score=440.00 Aligned_cols=259 Identities=19% Similarity=0.242 Sum_probs=223.6
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCCh----h---hHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccch
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDE----S---LVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTN 76 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~----~---~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~ 76 (270)
++.+.++++|.+ .||||+||++|+++++++|++. + .+.++|++|||||++||||||| ||+|++|||+||+
T Consensus 63 ~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~~~A~avEliH~asLIHDDI--mD~s~~RRG~pt~ 139 (374)
T 2qis_A 63 IARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI--MDSSLTRRGQICW 139 (374)
T ss_dssp HHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCEETTEECG
T ss_pred HHHHHHHHHhhc-CCCcchHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCCCCccH
Confidence 457889999987 8999999999999999998742 2 4678999999999999999999 9999999999999
Q ss_pred hhhcChh-HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC------CCCHHHHH
Q 024239 77 HKVFGEP-TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK------DVSLSELE 149 (270)
Q Consensus 77 ~~~~G~~-~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~------~~~~~~~~ 149 (270)
|++||++ +||++||++++.+|+++++.....+ ...+++..+++++ ..++.||.+|+.+... .+++++|.
T Consensus 140 h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~ 215 (374)
T 2qis_A 140 YQKPGVGLDAINDANLLEACIYRLLKLYCREQP--YYLNLIELFLQSS--YQTEIGQTLDLLTAPQGNVDLVRFTEKRYK 215 (374)
T ss_dssp GGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHH--HHHHHHHHHHHHHSCTTCCCGGGCCHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHH--HHHHHHHHHHHHcccccccccccCCHHHHH
Confidence 9999999 9999999999999999987532211 2234445555555 6789999999988653 26899999
Q ss_pred HHHhhchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHh
Q 024239 150 YIHVHKTAKL-LEASVVCGVIIGG-GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLM 227 (270)
Q Consensus 150 ~i~~~KTg~l-f~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 227 (270)
.|+++|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| .|+|+++||+|||+++
T Consensus 216 ~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T~p~l~ 294 (374)
T 2qis_A 216 SIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQ 294 (374)
T ss_dssp HHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCCHHHHH
T ss_pred HHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCccHHHHH
Confidence 9999999999 9999999999999 99999999999999999999999999999999999999 8999999999999999
Q ss_pred hHHH------------------------------------HHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhccC
Q 024239 228 GIEN------------------------------------AKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 228 ~l~~------------------------------------a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
+++. +++.++++.++|++.|+.+|++ .++.|..+++++++|++
T Consensus 295 al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 295 CLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 374 (374)
T ss_dssp HHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHC----
T ss_pred HHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHcCcC
Confidence 6543 2444677889999999999654 57899999999999974
No 34
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=7.3e-61 Score=430.82 Aligned_cols=240 Identities=24% Similarity=0.314 Sum_probs=196.9
Q ss_pred HHhhhCCCCChHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHH
Q 024239 12 RYSLLAGGKRIRPVLCIASCELVGGDE--SLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAG 89 (270)
Q Consensus 12 ~y~~~~~GK~lRp~l~l~~~~~~g~~~--~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~G 89 (270)
.|.+..||||+||.+++++++..+... +.+.++|++|||||+|||||||| ||+|++|||+||+|.+||+++|||+|
T Consensus 28 ~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~G 105 (315)
T 3tc1_A 28 LFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDV--IDKATMRRKLPSINALFGNFNAVMLG 105 (315)
T ss_dssp HHTTCCCCCCHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT--C----------------CCSHHHHHH
T ss_pred HHHhcCCcccHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHcCC--CCCCCCcCCCccHHHHhCchHHHHHH
Confidence 577889999999999999988433322 56779999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHHHHHHHHH
Q 024239 90 DALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASVVCGV 168 (270)
Q Consensus 90 d~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~~~~~~ga 168 (270)
|+|++.|++.++++. . +++..+++++ ..++.||.+|+.+..+ .+++++|..|+++|||+||++||++|+
T Consensus 106 D~L~~~a~~~l~~~~-----~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga 175 (315)
T 3tc1_A 106 DVFYSKAFFELSKMG-----E---LIAQALSNAV--LRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMA 175 (315)
T ss_dssp HHHHHHHHHHHTTSC-----H---HHHHHHHHHH--HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-----H---HHHHHHHHHH--HHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999752 2 3445556666 7899999999998754 389999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHh---------------------
Q 024239 169 IIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLM--------------------- 227 (270)
Q Consensus 169 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~--------------------- 227 (270)
+++|++ .+.++.||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 176 ~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~ 252 (315)
T 3tc1_A 176 ILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQDS 252 (315)
T ss_dssp HHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHHTTTCCC
T ss_pred HHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHHHHcCCC
Confidence 999987 67899999999999999999999999999999999999999999999997
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHH
Q 024239 228 ---------------GIENAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIV 266 (270)
Q Consensus 228 ---------------~l~~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~ 266 (270)
+++++++.++++.++|++.|+.||++ .++.|.++++|+.
T Consensus 253 ~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 253 HEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDVISRTF 307 (315)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 45677888999999999999999764 4688999888763
No 35
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=1.3e-60 Score=438.12 Aligned_cols=258 Identities=20% Similarity=0.229 Sum_probs=225.0
Q ss_pred hHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCC----hhh---HHH----HHHHHHHHHHHHHHHhCCCCCCCCCCCcCc
Q 024239 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGD----ESL---VMP----MACALEMTHTMSLIHDDLPALDNDDLRRGK 73 (270)
Q Consensus 5 ~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~----~~~---~~~----lA~avElih~asLihDDI~~~D~~~~RRg~ 73 (270)
+.+.++++|.+ .||||+||.+++++++++|++ ++. +++ +|++|||||+|||||||| ||+|++|||+
T Consensus 34 ~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a~~~a~avEliH~asLiHDDI--~D~s~~RRG~ 110 (362)
T 1yhl_A 34 RYLRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDI--MDGSVMRRGK 110 (362)
T ss_dssp HHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTE
T ss_pred HHHHHHHHhhc-CCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCCCCCC
Confidence 46888899987 799999999999999999875 222 344 789999999999999999 9999999999
Q ss_pred cchhhhcCh--hHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcC-----------C
Q 024239 74 PTNHKVFGE--PTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSE-----------G 140 (270)
Q Consensus 74 pt~~~~~G~--~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~-----------~ 140 (270)
||+|.+||+ ++|||+||+|++.|++.+++.... ++...+++..+++++ ..++.||++|+.+. .
T Consensus 111 pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~~~ 186 (362)
T 1yhl_A 111 PCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFAD--RPFLKDLLCLFQKVD--YATAVGQMYDVTSMCDSNKLDPEVAQ 186 (362)
T ss_dssp ECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHH--HHHHHHHHHHHTTTBCGGGCCTTSCC
T ss_pred ccHHhccCccHhHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHH--HHHHHHHHHHHHcccccccccccccc
Confidence 999999999 589999999999999999985321 122344556666666 78999999999887 2
Q ss_pred --C----CCCHHHHHHHHhhchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCc
Q 024239 141 --K----DVSLSELEYIHVHKTAKL-LEASVVCGVIIGG-GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTA 212 (270)
Q Consensus 141 --~----~~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~ 212 (270)
. .+++++|..|+++|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| .
T Consensus 187 ~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~ 265 (362)
T 1yhl_A 187 PMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-V 265 (362)
T ss_dssp CBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-C
T ss_pred ccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC-C
Confidence 2 368999999999999999 9999999999999 88888899999999999999999999999999999999 8
Q ss_pred cchhhhCCCcHHHHhhH------------------------------------HHHHHHHHHHHHHHHHHhhccCCC-Ch
Q 024239 213 GKDLVSDKATYPKLMGI------------------------------------ENAKKFAEELFSQATKELAYFEVS-KA 255 (270)
Q Consensus 213 ~~Dl~~gk~T~p~i~~l------------------------------------~~a~~~~~~~~~~a~~~L~~l~~~-~~ 255 (270)
|+|+++||+|||+++++ +++++.++++.++|++.|+.+|.+ .+
T Consensus 266 g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~ 345 (362)
T 1yhl_A 266 GTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPT 345 (362)
T ss_dssp CCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred hhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 99999999999999843 345677888999999999999754 46
Q ss_pred --HHHHHHHHHHHhccC
Q 024239 256 --APLYHLAKYIVSRQN 270 (270)
Q Consensus 256 --~~L~~l~~~~~~R~~ 270 (270)
+.|..+++++++|++
T Consensus 346 ~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 346 FAESVAVVWEKTHKRKK 362 (362)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 889999999999974
No 36
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=2.9e-60 Score=435.51 Aligned_cols=259 Identities=20% Similarity=0.242 Sum_probs=226.9
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCC----hh---hHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccch
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGD----ES---LVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTN 76 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~----~~---~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~ 76 (270)
++++.++++|.+ .||||+||++|+++++++|++ .+ .+.++|++|||||++||||||| ||+|++|||+||+
T Consensus 56 ~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDI--mD~s~~RRG~pt~ 132 (367)
T 1uby_A 56 VARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDI--MDQSLTRRGQLCW 132 (367)
T ss_dssp HHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECG
T ss_pred HHHHHHHHhhhc-CCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHHHHHHHHHHHHhCcc--cCCCCCCCCCCCh
Confidence 358899999998 799999999999999999873 22 4789999999999999999999 9999999999999
Q ss_pred hhhcChh-HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC------CCCHHHHH
Q 024239 77 HKVFGEP-TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK------DVSLSELE 149 (270)
Q Consensus 77 ~~~~G~~-~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~------~~~~~~~~ 149 (270)
|++||++ ++|+.||++++.+|+++++.....+ ...+++..+++++ ..++.||.+|+.+... .+++++|.
T Consensus 133 h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~ 208 (367)
T 1uby_A 133 YKKEGVGLDAINDSFLLESSVYRVLKKYCRQRP--YYVHLLELFLQTA--YQTELGQMLDLITAPVSKVDLSHFSEERYK 208 (367)
T ss_dssp GGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHH--HHHHHHHHHHHHHSCTTSCCCTTCCHHHHH
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHH--HHHHHHHHHHHhcccccccccccCCHHHHH
Confidence 9999999 9999999999999999998532211 2234445555555 6789999999988642 37899999
Q ss_pred HHHhhchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHh
Q 024239 150 YIHVHKTAKL-LEASVVCGVIIGG-GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLM 227 (270)
Q Consensus 150 ~i~~~KTg~l-f~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 227 (270)
.|+++|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| .|+|+++||+|||+++
T Consensus 209 ~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~ 287 (367)
T 1uby_A 209 AIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQ 287 (367)
T ss_dssp HHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCchHHHHH
Confidence 9999999999 9999999999999 89999999999999999999999999999999999999 8999999999999999
Q ss_pred hHHHH------------------------------------HHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhccC
Q 024239 228 GIENA------------------------------------KKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 228 ~l~~a------------------------------------~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
+++.+ ++.++++.++|++.|+.+|++ .++.|..+++++.+|++
T Consensus 288 al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 288 CLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHHHHHHHHHCCCCC
T ss_pred HHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 76542 245778899999999999654 57999999999999975
No 37
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=4.2e-60 Score=437.25 Aligned_cols=257 Identities=21% Similarity=0.261 Sum_probs=212.0
Q ss_pred hHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCC------hhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhh
Q 024239 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGD------ESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHK 78 (270)
Q Consensus 5 ~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~------~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~ 78 (270)
+++.++++|.+ .||||+||++|+++++++|++ .+.+.++|++|||||+|||||||| ||+|++|||+||||+
T Consensus 66 ~~~~~~~~Y~~-~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~lA~aiEliH~asLIHDDI--mD~s~~RRG~pt~h~ 142 (395)
T 2ihi_A 66 KYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDI--MDKGEMRRNKYCWYL 142 (395)
T ss_dssp HHHHHHHHHHH-SSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECGGG
T ss_pred HHHHHHHHhhc-cCcccHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCCCCCCCccc
Confidence 56778999998 999999999999999999875 256789999999999999999999 999999999999999
Q ss_pred hcChhH--HHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHh-hc-----------------
Q 024239 79 VFGEPT--AILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDL-DS----------------- 138 (270)
Q Consensus 79 ~~G~~~--Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~-~~----------------- 138 (270)
+||++. |||+||+|++.+++++++.... .+...+++..+++++ ..++.||.+|+ .|
T Consensus 143 ~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~--~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~ 218 (395)
T 2ihi_A 143 LKDVETKNAVNDVLLLYNSIYKLIEIYLRN--ESCYVDVIATFRDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNIN 218 (395)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH--HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHH--HHHHHhHHHHHHhhhhccccccccccccccc
Confidence 999998 9999999999999999874221 112345556666666 78899999999 22
Q ss_pred ---CCC----CCCHHHHHHHHhhchHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 024239 139 ---EGK----DVSLSELEYIHVHKTAKL-LEASVVCGVIIGGGNVIE--IERVRNYARCIGLLFQVVDDILDVTKSSTVL 208 (270)
Q Consensus 139 ---~~~----~~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~ 208 (270)
.+. .+++++|..|+.+|||+| |.+||++|++++|++++. .+.++.||.++|+||||+||++|++++++.+
T Consensus 219 ~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~ 298 (395)
T 2ihi_A 219 VPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKT 298 (395)
T ss_dssp CC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred ccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHh
Confidence 111 368999999999999999 999999999999998887 8899999999999999999999999999999
Q ss_pred CCCccchhhhCCCcHHHHhh------------------------------------HHHHHHHHHHHHHHHHHHhhccCC
Q 024239 209 GKTAGKDLVSDKATYPKLMG------------------------------------IENAKKFAEELFSQATKELAYFEV 252 (270)
Q Consensus 209 gK~~~~Dl~~gk~T~p~i~~------------------------------------l~~a~~~~~~~~~~a~~~L~~l~~ 252 (270)
|| .|+|+++||+|||++++ ++++++.++++.++|++.|+.+|+
T Consensus 299 GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~ 377 (395)
T 2ihi_A 299 GK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHH 377 (395)
T ss_dssp -----CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99 99999999999999984 455677889999999999999976
Q ss_pred -CChHHHHHHHHHHHhcc
Q 024239 253 -SKAAPLYHLAKYIVSRQ 269 (270)
Q Consensus 253 -~~~~~L~~l~~~~~~R~ 269 (270)
..++.|..+++++.+|.
T Consensus 378 ~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 378 EGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred chHHHHHHHHHHHHhccC
Confidence 45689999999999983
No 38
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=5.9e-60 Score=420.23 Aligned_cols=239 Identities=20% Similarity=0.245 Sum_probs=218.2
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|.+. ||||+||.+++++++++|++++.+.++|+++|+||++||||||| ||+|++|||+||+|.+||++
T Consensus 35 ~~~l~~~~~y~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi--~D~s~~RRG~pt~h~~~G~~ 111 (289)
T 2azj_A 35 DWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDI--VDLDATRRGDKAAWVVYGNR 111 (289)
T ss_dssp CTTHHHHHHHHHS-CCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHH--HTTCCBSSSSBCHHHHHHHH
T ss_pred hHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCCCCCCccHHHhcChH
Confidence 4569999999998 99999999999999999998888999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHV-AAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~ 162 (270)
+|||+||+|++.||+.+ ++.. + +++..+++++ .+++.||.+|+.+ +++|.+++++|||+||++
T Consensus 112 ~AIlaGD~Ll~~a~~~l~~~~~----~----~~~~~~~~~~--~~~~~GQ~~dl~~------~~~y~~~i~~KTa~L~~~ 175 (289)
T 2azj_A 112 KVIFITNYLIPTALRIIQTSYG----D----DALNTSIELW--KDTSVGALRDMYD------NSDYIRTIELKTGSLFKL 175 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----H----HHHHHHHHHH--HHHHHHHHHTTTT------TSCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCc----H----HHHHHHHHHH--HHHHHHHHHHHhh------HHHHHHHHHcchHHHHHH
Confidence 99999999999999999 8752 2 2455666666 7899999999975 567888999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHh---hHHHH-HHHHHH
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLM---GIENA-KKFAEE 238 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~---~l~~a-~~~~~~ 238 (270)
||++|++++ ++++..+.+++||.++|+||||+||++|++++ ||+ |+++||+|||+++ +.+.+ +..+++
T Consensus 176 a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp~l~~~~g~~~a~~~~a~~ 247 (289)
T 2azj_A 176 STVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLFKYYREGKLEEYVRSVYLE 247 (289)
T ss_dssp HHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHHHHHHcCCHHHHHHHHHHH
Confidence 999999999 88888999999999999999999999999985 454 8999999999999 88888 788999
Q ss_pred HHHHHHHHhhccCC-C-ChHHHHHHHHHHHhcc
Q 024239 239 LFSQATKELAYFEV-S-KAAPLYHLAKYIVSRQ 269 (270)
Q Consensus 239 ~~~~a~~~L~~l~~-~-~~~~L~~l~~~~~~R~ 269 (270)
+.++|++.|+.||. + .++.|.++++++++|.
T Consensus 248 ~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 248 YKQKYDELISNIPFQSKYLSEIRSLPEFLANGL 280 (289)
T ss_dssp HHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 99999999999965 3 4789999999999985
No 39
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=5.7e-60 Score=436.27 Aligned_cols=258 Identities=22% Similarity=0.239 Sum_probs=221.2
Q ss_pred hHHHHHHHHhhhCCCCChHHHHHHHHHHHhCC-------------ChhhHHHHHH----HHHHHHHHHHHHhCCCCCCCC
Q 024239 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGG-------------DESLVMPMAC----ALEMTHTMSLIHDDLPALDND 67 (270)
Q Consensus 5 ~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~-------------~~~~~~~lA~----avElih~asLihDDI~~~D~~ 67 (270)
+++.++++|.+ .||||+||++|+++++++|+ +.+.++++|+ +|||||+|||||||| ||+|
T Consensus 56 ~~l~~~m~Y~~-~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDI--mD~s 132 (390)
T 3dyh_A 56 RYLRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDI--MDNS 132 (390)
T ss_dssp HHHHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTC
T ss_pred HHHHHHHHhhc-CCccchhHHHHHHHHHHhCCccccccccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCC--cCCC
Confidence 57899999999 99999999999999999886 2345666665 799999999999999 9999
Q ss_pred CCCcCccchhhhcChhHHHHHHHHHHHH--HHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcC------
Q 024239 68 DLRRGKPTNHKVFGEPTAILAGDALLAL--AFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSE------ 139 (270)
Q Consensus 68 ~~RRg~pt~~~~~G~~~Ail~Gd~L~~~--a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~------ 139 (270)
++|||+||||+.||+++||++||+++.. +++++++...+.+ ...+++..+++++ ..++.||.+|+.+.
T Consensus 133 ~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~--~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~e~~~~ 208 (390)
T 3dyh_A 133 VTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRP--FLQDLLCRFNRVD--YTTAVGQLYDVTSMFDSNKL 208 (390)
T ss_dssp CEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCT--THHHHHHHHHHHH--HHHHHHHHHHHTTTSCGGGC
T ss_pred CCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCch--hHHHHHHHHHHHH--HHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999865 4788876422111 1234445555555 67899999999872
Q ss_pred -----C------CCCCHHHHHHHHhhchHHH-HHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 024239 140 -----G------KDVSLSELEYIHVHKTAKL-LEASVVCGVIIGGGNVIE-IERVRNYARCIGLLFQVVDDILDVTKSST 206 (270)
Q Consensus 140 -----~------~~~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~~~~~~-~~~l~~~g~~lG~afQi~DD~ld~~~~~~ 206 (270)
. ..+++++|..|+++|||+| |++||++|++++|++++. .+.++.||.++|+||||+||++|++++++
T Consensus 209 d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~ 288 (390)
T 3dyh_A 209 DPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPE 288 (390)
T ss_dssp CTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred ccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 1 1378999999999999999 999999999999988775 78899999999999999999999999999
Q ss_pred ccCCCccchhhhCCCcHHHHhh------------------------------------HHHHHHHHHHHHHHHHHHhhcc
Q 024239 207 VLGKTAGKDLVSDKATYPKLMG------------------------------------IENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 207 ~~gK~~~~Dl~~gk~T~p~i~~------------------------------------l~~a~~~~~~~~~~a~~~L~~l 250 (270)
.+|| .|+|+++||+|||++++ ++++++.++++.++|++.|+.+
T Consensus 289 ~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l 367 (390)
T 3dyh_A 289 RLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKL 367 (390)
T ss_dssp HHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999 99999999999999984 4556777889999999999999
Q ss_pred CCCC---hHHHHHHHHHHHhccC
Q 024239 251 EVSK---AAPLYHLAKYIVSRQN 270 (270)
Q Consensus 251 ~~~~---~~~L~~l~~~~~~R~~ 270 (270)
|... ++.|..|++++++|++
T Consensus 368 ~~~~~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 368 RLCSPGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHCHHHHHHHHHHHHTTTTCCC
T ss_pred CCCchHHHHHHHHHHHHHHcCCC
Confidence 6544 6899999999999975
No 40
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=7e-59 Score=430.75 Aligned_cols=252 Identities=22% Similarity=0.306 Sum_probs=200.6
Q ss_pred HHHHHHHHhhhCCCCChHHHHHHHHHHHhCCC------hhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhh
Q 024239 6 KIHEAMRYSLLAGGKRIRPVLCIASCELVGGD------ESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKV 79 (270)
Q Consensus 6 ~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~------~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~ 79 (270)
++..++.|.+ .||||+||++|+++++++|+. .+.++++|++|||||+|||||||| ||+|++|||+||+|.+
T Consensus 67 ~~~~~~~Y~~-~GGKRlRP~l~l~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDI--mD~s~~RRG~pt~h~~ 143 (395)
T 3mav_A 67 YYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDI--MDKGEMRRNKYCWYLL 143 (395)
T ss_dssp HHHHHHHHHH-SSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECGGGS
T ss_pred HHHHHHhcCC-CCchhhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhHH--hcCCCCCCCchhhhhc
Confidence 3445567777 799999999999999999763 256889999999999999999999 9999999999999999
Q ss_pred cChhHHHHHHHHHH--HHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC----------------
Q 024239 80 FGEPTAILAGDALL--ALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK---------------- 141 (270)
Q Consensus 80 ~G~~~Ail~Gd~L~--~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~---------------- 141 (270)
||+++||++||+++ +.++.++..... +.....+++..++++. ..++.||.+|+.+...
T Consensus 144 ~g~~~Ail~GD~ll~~~~~~~ll~~~~~--~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~ 219 (395)
T 3mav_A 144 KDVETKNAVNDVLLLYNSIYKLIEIYLR--NESCYVDVIATFRDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNINV 219 (395)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHT--TSTTHHHHHHHHHHHH--HHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSS
T ss_pred cchHHHHHhhhHHHHHHHHHHHHHHhcc--ChhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccchhHHHHhhhccccc
Confidence 99999999999876 456777766422 1223445666666666 7899999999975321
Q ss_pred ---------CCCHHHHHHHHhhchHHH-HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC
Q 024239 142 ---------DVSLSELEYIHVHKTAKL-LEASVVCGVIIGGGN--VIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLG 209 (270)
Q Consensus 142 ---------~~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~~~--~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~g 209 (270)
.+++++|..|+++|||+| |.+||.+|++++|++ ++.++.++.||.++|+||||+||++|++++++.+|
T Consensus 220 ~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~G 299 (395)
T 3mav_A 220 PEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTG 299 (395)
T ss_dssp CCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred chhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhc
Confidence 157899999999999999 999999999999874 34578899999999999999999999999999999
Q ss_pred CCccchhhhCCCcHHHHhhHH------------------------------------HHHHHHHHHHHHHHHHhhccCCC
Q 024239 210 KTAGKDLVSDKATYPKLMGIE------------------------------------NAKKFAEELFSQATKELAYFEVS 253 (270)
Q Consensus 210 K~~~~Dl~~gk~T~p~i~~l~------------------------------------~a~~~~~~~~~~a~~~L~~l~~~ 253 (270)
| .|+||++||+|||++++++ ++++.++++.++|.+.|+.++.
T Consensus 300 K-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~- 377 (395)
T 3mav_A 300 K-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHH- 377 (395)
T ss_dssp --CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCC-
T ss_pred c-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCc-
Confidence 9 5999999999999998553 3456677888899999998864
Q ss_pred ChHHHHHHHHHHHhc
Q 024239 254 KAAPLYHLAKYIVSR 268 (270)
Q Consensus 254 ~~~~L~~l~~~~~~R 268 (270)
+.++.+.+++++|
T Consensus 378 --~~l~~ll~~lle~ 390 (395)
T 3mav_A 378 --EGIEYVLKYLLEI 390 (395)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3455555555554
No 41
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=1.9e-59 Score=430.48 Aligned_cols=255 Identities=18% Similarity=0.209 Sum_probs=215.4
Q ss_pred hHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCC----hhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhc
Q 024239 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGD----ESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVF 80 (270)
Q Consensus 5 ~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~----~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~ 80 (270)
+++.++++|.+ +||||+||++++++++++++. .+.++++||+|||||+|||||||| ||+|++|||+||+|++|
T Consensus 58 ~~~~~~l~Y~~-~GGKrlRp~l~~~~~~~~~~~~~~~~e~~~~la~aiEliH~asLiHDDi--mD~s~~RRG~pt~h~~~ 134 (368)
T 2q58_A 58 EYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDI--MDSGKFRRGAPCWYIVH 134 (368)
T ss_dssp HHHHHHHHHHT-TCSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCEETTEECHHHHT
T ss_pred HHHHHHHhcCC-CCccchhHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCCCCccccCc
Confidence 46889999998 899999999999999999863 467889999999999999999999 99999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC---CCCHHHHHHHHhhchH
Q 024239 81 GEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK---DVSLSELEYIHVHKTA 157 (270)
Q Consensus 81 G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~---~~~~~~~~~i~~~KTg 157 (270)
|+++|||+||+|++.|++++.++....+.+...+++..+++++ ..++.||.+|+.+... +.++++|..|+.+|||
T Consensus 135 G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa 212 (368)
T 2q58_A 135 GQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTS 212 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTH
T ss_pred chhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHH--HHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhc
Confidence 9999999999999999999987644344556677888888877 7889999999987542 2568889999999999
Q ss_pred HH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHH---
Q 024239 158 KL-LEASVVCGVIIGG--GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIEN--- 231 (270)
Q Consensus 158 ~l-f~~~~~~ga~la~--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~--- 231 (270)
.| |.+||.+|++++| ++++..+.++.||.++|+||||+||++|+++ ||+.|+|+++||+|||++++++.
T Consensus 213 ~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~ 287 (368)
T 2q58_A 213 RYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADE 287 (368)
T ss_dssp HHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCH
T ss_pred cccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCH
Confidence 98 8999999999998 5667788899999999999999999999975 89999999999999999985432
Q ss_pred -----------------------------HHHHHHHHHHHHHHHhhccCCCC-h----HHHHHHHHHHHhcc
Q 024239 232 -----------------------------AKKFAEELFSQATKELAYFEVSK-A----APLYHLAKYIVSRQ 269 (270)
Q Consensus 232 -----------------------------a~~~~~~~~~~a~~~L~~l~~~~-~----~~L~~l~~~~~~R~ 269 (270)
+.+.+++.++++.+.++.++... + ..|.++++++++|+
T Consensus 288 ~~r~~L~~~~~~~~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 288 EMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh
Confidence 23445667778888888885432 2 34667777777765
No 42
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=2.6e-59 Score=427.38 Aligned_cols=251 Identities=19% Similarity=0.191 Sum_probs=220.7
Q ss_pred hHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCC----hhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhc
Q 024239 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGD----ESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVF 80 (270)
Q Consensus 5 ~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~----~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~ 80 (270)
+++.++++|.. .||||+||++|+++++++|+. .+.+.++|++|||+|++||||||| ||+|++|||+||||++|
T Consensus 58 ~~~~~~~~y~~-~GGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~A~avEllH~asLIHDDI--mD~s~~RRG~pt~h~~~ 134 (368)
T 2her_A 58 EYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDI--MDSGKFRRGAPCWYIVH 134 (368)
T ss_dssp HHHHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCEETTEECHHHHT
T ss_pred HHHHHHHHHhh-CCCCccchHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHccc--ccCCCCCCCCccHHhcC
Confidence 66778888887 999999999999999999863 468899999999999999999999 99999999999999999
Q ss_pred ChhHHHHHHHHHH---HHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC--CCCH-HHHHHHHhh
Q 024239 81 GEPTAILAGDALL---ALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK--DVSL-SELEYIHVH 154 (270)
Q Consensus 81 G~~~Ail~Gd~L~---~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~--~~~~-~~~~~i~~~ 154 (270)
|+.+|||+||+|+ +.+++++++... .....+++..+++++ ..++.||.+|+.+... ..+. ++|..|+++
T Consensus 135 G~~~AIl~GD~L~~~a~~a~~ll~~~~~---~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~ 209 (368)
T 2her_A 135 GQSNAINDIFFLKMLSLSLIFELSSVFG---NDIVMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEM 209 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHC---HHHHHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcC---cChHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCCCChHHHHHHHHHc
Confidence 9999999999999 888888876311 111456777777777 7899999999988652 2444 899999999
Q ss_pred chHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhh---
Q 024239 155 KTAKL-LEASVVCGVIIGGGNVIE--IERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMG--- 228 (270)
Q Consensus 155 KTg~l-f~~~~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~--- 228 (270)
|||+| |++||++|++++|++++. .+.++.||.++|+||||+||++|++ .+|| .|+||++||+|||++++
T Consensus 210 KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~pvi~al~~ 284 (368)
T 2her_A 210 KTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTWPLQKSFEI 284 (368)
T ss_dssp HTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCHHHHSSTTT
T ss_pred cchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccHHHHHHHHh
Confidence 99999 999999999999998887 8899999999999999999999998 7899 89999999999999973
Q ss_pred -----------------------------HHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhc
Q 024239 229 -----------------------------IENAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSR 268 (270)
Q Consensus 229 -----------------------------l~~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R 268 (270)
++++++.++++.++|++.|+.+|.+ .++.|..+++++.++
T Consensus 285 a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 285 ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISEL 354 (368)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999764 468999999999876
No 43
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=3e-56 Score=393.87 Aligned_cols=232 Identities=28% Similarity=0.465 Sum_probs=206.1
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcCh
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGE 82 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~ 82 (270)
.|..+.++++|++..||||+||.+|+++++++|++.+.+.++|++||+||+||||||||||+|++ .|||+||+|++||+
T Consensus 24 ~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~dD~d-~RRG~pt~h~~~G~ 102 (274)
T 3kra_B 24 PPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLTDGS-RPVSKPAIQHKYGP 102 (274)
T ss_dssp SSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCSSSS-SCCCSSCCCCSSCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCc-cCCCCCCchhhcCh
Confidence 45569999999999999999999999999999999999999999999999999999999655665 69999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcCC---CCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHH
Q 024239 83 PTAILAGDALLALAFEHVAAKTVG---VSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKL 159 (270)
Q Consensus 83 ~~Ail~Gd~L~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~l 159 (270)
++|||+||+|++.||+.+++.... .++..+.+++..+++++|..+++.||.+|+.+..+.+++++|.+|+++|||+|
T Consensus 103 ~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L 182 (274)
T 3kra_B 103 NVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEM 182 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999986432 22456788889999988878899999999998766689999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHH
Q 024239 160 LEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239 (270)
Q Consensus 160 f~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~ 239 (270)
|++||++|++++|++++.++.+++||.++|++|||+||.. . || +.+.+.++++
T Consensus 183 ~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~~--~------~~-------------------~~~~~~~~~~ 235 (274)
T 3kra_B 183 HACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKN--S------HQ-------------------LIDENIIGKL 235 (274)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTT--T------SC-------------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhc--c------cc-------------------HHHHHHHHHH
Confidence 9999999999999999999999999999999999999981 1 22 4457789999
Q ss_pred HHHHHHHhhccCCCChHHHHHHH
Q 024239 240 FSQATKELAYFEVSKAAPLYHLA 262 (270)
Q Consensus 240 ~~~a~~~L~~l~~~~~~~L~~l~ 262 (270)
.++|++.|+.|+.+...+|..|+
T Consensus 236 ~~~A~~~L~~~~~~~~~pl~~~~ 258 (274)
T 3kra_B 236 KELALEELGGFHGKNAELMSSLV 258 (274)
T ss_dssp HHHHHHHHTTSCSSHHHHTGGGG
T ss_pred HHHHHHHHHcCCchhhhhHHHHH
Confidence 99999999999876556666554
No 44
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=5.8e-54 Score=379.24 Aligned_cols=229 Identities=28% Similarity=0.443 Sum_probs=203.9
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcCh
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGE 82 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~ 82 (270)
.|..+.++++|.+..||||+||.+|+++++++|++.+.+.++|++|||||+|||||||| +|+|+ |||+||+|++||+
T Consensus 29 ~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI--~D~d~-RRG~pt~h~~~G~ 105 (273)
T 3qkc_B 29 APESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYTHENL--PLTDG-PMSKSEIQHKFDP 105 (273)
T ss_dssp CSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHHHHHSC--CBTTB-CSSSSCCCCSSCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCc--ccCcc-CCCCCCchhhcCH
Confidence 45669999999999999999999999999999999999999999999999999999999 78777 9999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcCC--CCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHH
Q 024239 83 PTAILAGDALLALAFEHVAAKTVG--VSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLL 160 (270)
Q Consensus 83 ~~Ail~Gd~L~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf 160 (270)
++|||+||+|++.||+.+++.... .++..+.+++..+++++|..+++.||.+|+.+. ...+.++++.|+++|||+||
T Consensus 106 ~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~-~~~~~eyl~~I~~~KTa~L~ 184 (273)
T 3qkc_B 106 NIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLN-QLNDLELIEYVCKKKEGTLH 184 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCC-SSCCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcC-CCCCHHHHHHHHHhhHHHHH
Confidence 999999999999999999986431 245677888999998888788999999999884 34677777788899999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHH
Q 024239 161 EASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF 240 (270)
Q Consensus 161 ~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~ 240 (270)
++||++|++++|++++.++.+++||.++|++|||+||+.+- . .+.++++.
T Consensus 185 ~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~~---~---------------------------~~~~~~~~ 234 (273)
T 3qkc_B 185 ACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSG---F---------------------------EGRIKELK 234 (273)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCST---T---------------------------HHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc---h---------------------------HHHHHHHH
Confidence 99999999999999999999999999999999999999631 0 16889999
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHH
Q 024239 241 SQATKELAYFEVSKAAPLYHLAKYI 265 (270)
Q Consensus 241 ~~a~~~L~~l~~~~~~~L~~l~~~~ 265 (270)
++|++.|+.|+.+...+|.+++++-
T Consensus 235 ~~a~~~l~~~~~~~~~~l~~~~~~~ 259 (273)
T 3qkc_B 235 ELAVKELESFGGEKIELIRGVFELE 259 (273)
T ss_dssp HHHHHHHTTCCSSHHHHHHHHTTC-
T ss_pred HHHHHHHHccCchhhhHHHHHHHHH
Confidence 9999999999765568888888764
No 45
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=4.3e-55 Score=386.35 Aligned_cols=194 Identities=28% Similarity=0.402 Sum_probs=169.0
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCC---ChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhc
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGG---DESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVF 80 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~---~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~ 80 (270)
|+.+.++++|.+..||||+||.+++++++++|+ +.+.+.++|++||+||+|||||||| ||+|++|||+||+|.+|
T Consensus 30 ~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~~~~~~~~~~~~A~aiEliH~aSLIHDDI--mD~s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 30 PISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLHVVSLLQDDV--MDQHDQRRGIKTPRAMY 107 (285)
T ss_dssp SHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHHH--HTTCSBSSSSBCHHHHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCcHHHhc
Confidence 678999999999999999999999999999998 7788999999999999999999999 99999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHH
Q 024239 81 GEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLL 160 (270)
Q Consensus 81 G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf 160 (270)
|++.|||+||+|++.|++.++++. + +++..+++++ .+++.||.+|+.+..+ . |+++|||+||
T Consensus 108 G~~~AIlaGD~Ll~~A~~~l~~~~----~----~~~~~ls~~~--~~~~~GQ~lDl~~~~~-----~---~i~~KTg~Lf 169 (285)
T 4fp4_A 108 GDGRAIVASDWLIAESIKMAVNLG----A----DVVTYLADVA--QRLSVGQALDLEGERD-----K---AAEFKTAPLI 169 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC----H----HHHHHHHHHH--HHHHHHHHHHHTTCHH-----H---HHHHHTHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhh----H----HHHHHHHHHH--HHHHHhHHHHHhcccc-----c---hhhcCcHHHH
Confidence 999999999999999999999852 2 4556666666 6899999999988641 1 8899999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhC
Q 024239 161 EASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSD 219 (270)
Q Consensus 161 ~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~g 219 (270)
++||++|++++|++ +.++.+++||.++|+||||+||++|++++++ .||+.++||+++
T Consensus 170 ~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 170 EAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp HHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 99999999999998 8888999999999999999999999999765 688889999877
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=96.46 E-value=0.19 Score=43.94 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=70.1
Q ss_pred hhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024239 126 EGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSS 205 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 205 (270)
..++.|...|+.... ..|.++++.-+.+-.|....+.+. +++..+++ ...++.++|.|+|+.|=+.|+-.|-
T Consensus 107 ~~li~g~~~Dl~~~~-~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv~eD~ 178 (294)
T 4hd1_A 107 LRLIEANRRDQRKHT-YDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDIDRDL 178 (294)
T ss_dssp HHHHHHHHHHHHCSB-CCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhccccCC-CCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhchhhh
Confidence 356788888886543 257777666554444444444443 34444443 4467889999999999888874331
Q ss_pred cccCCCc------------cchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCC
Q 024239 206 TVLGKTA------------GKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSK 254 (270)
Q Consensus 206 ~~~gK~~------------~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l~~~~ 254 (270)
..|.-. -.|+..++.|-.+.-.++.-...++.++++|...+..+|+..
T Consensus 179 -~~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~ 238 (294)
T 4hd1_A 179 -ALGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRL 238 (294)
T ss_dssp -HTTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHH
T ss_pred -ccCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 112110 223333333333333445555667788888888888776543
No 47
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=95.43 E-value=0.23 Score=43.27 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=74.0
Q ss_pred hhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024239 126 EGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSS 205 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 205 (270)
..++.|...|+.... -.|.++++.-+.+-.|....+.+.+ ++..+. ......+.++|.|+|+.|=+.|+
T Consensus 111 ~~li~g~~~Dl~~~~-~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~---~~~~~~A~~lG~AlQltNilRDv---- 179 (293)
T 3acx_A 111 YNLIDTVYKDQHFTM-FETDAELFGYCYGVAGTVGEVLTPI---LSDHET---HQTYDVARRLGESLQLINILRDV---- 179 (293)
T ss_dssp HHHHHHHHHHTTCCC-CSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCC---HHHHHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCc---HHHHHHHHHHHHHHHHHHHHHHH----
Confidence 356678888886432 2577877766655555555555543 233331 23567999999999999977777
Q ss_pred cccCCCccchhhhCCCcHHHH----------------------hhHHHHHHHHHHHHHHHHHHhhccCCCChH
Q 024239 206 TVLGKTAGKDLVSDKATYPKL----------------------MGIENAKKFAEELFSQATKELAYFEVSKAA 256 (270)
Q Consensus 206 ~~~gK~~~~Dl~~gk~T~p~i----------------------~~l~~a~~~~~~~~~~a~~~L~~l~~~~~~ 256 (270)
+.|...|++-||.- -.+..-...++.++.+|...+..+|...+.
T Consensus 180 -------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r~ 245 (293)
T 3acx_A 180 -------GEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQP 245 (293)
T ss_dssp -------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHHH
T ss_pred -------HHHHhCCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHH
Confidence 55666677766641 233444556788888888888888765443
No 48
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=95.38 E-value=0.51 Score=42.14 Aligned_cols=111 Identities=14% Similarity=0.027 Sum_probs=71.4
Q ss_pred hHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 024239 128 LLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTV 207 (270)
Q Consensus 128 ~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~ 207 (270)
+..|-..|+.. .-.|.++++.-+.+-.|....+.+.+-..-...++. .......+.++|.|+|+.|=+.|+
T Consensus 123 m~~gm~~dl~~--~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQltNilRDv------ 193 (343)
T 3vj8_A 123 MGIGMAEFLDK--HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKTNIIRDY------ 193 (343)
T ss_dssp HHHHHHHGGGC--CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHHHHHHTH------
T ss_pred HHHHHHHhccC--CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHHHHHHHh------
Confidence 45566667652 225788877766566666666666654433222222 334678899999999999988887
Q ss_pred cCCCccchhhhCCCcHHH----------------------HhhHHHHHHHHHHHHHHHHHHhhccCC
Q 024239 208 LGKTAGKDLVSDKATYPK----------------------LMGIENAKKFAEELFSQATKELAYFEV 252 (270)
Q Consensus 208 ~gK~~~~Dl~~gk~T~p~----------------------i~~l~~a~~~~~~~~~~a~~~L~~l~~ 252 (270)
+.|+..|++-||. .-.+..-...++.++.+|...+..+++
T Consensus 194 -----~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~ 255 (343)
T 3vj8_A 194 -----LEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRN 255 (343)
T ss_dssp -----HHHHHTTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC
T ss_pred -----HHHHhCCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3444445554443 334555566678888888888888865
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=94.86 E-value=0.35 Score=43.71 Aligned_cols=111 Identities=10% Similarity=-0.021 Sum_probs=62.2
Q ss_pred hhhHHHHHHHhhcC--CCCCCHHHHHHHHhhchHHHHHH-HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHhhhh
Q 024239 126 EGLLKGQVTDLDSE--GKDVSLSELEYIHVHKTAKLLEA-SVVCGVIIGGGNVIEI--ERVRNYARCIGLLFQVVDDILD 200 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~--~~~~~~~~~~~i~~~KTg~lf~~-~~~~ga~la~~~~~~~--~~l~~~g~~lG~afQi~DD~ld 200 (270)
..++.+-..+..|. +..++.++|..+.+.-+|..+.+ .+..+.- -..+++.. ..+.++-...+...-+.||+..
T Consensus 187 ~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S 265 (382)
T 3kb9_A 187 HTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSG-CELPDAVRKHPAYRRAALLSQEFAAWYNDLCS 265 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 34555665565553 22378999988864444443222 2222211 12334333 2466778888999999999999
Q ss_pred hcccccccCCCccchhhhCCC-cHHHHh------hHHHHHHHHHHHHHHHHHHhh
Q 024239 201 VTKSSTVLGKTAGKDLVSDKA-TYPKLM------GIENAKKFAEELFSQATKELA 248 (270)
Q Consensus 201 ~~~~~~~~gK~~~~Dl~~gk~-T~p~i~------~l~~a~~~~~~~~~~a~~~L~ 248 (270)
|..+. .+|.. +...++ ..|.|.+.+.+.++++.+.++
T Consensus 266 ~~kE~-----------~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~ 309 (382)
T 3kb9_A 266 LPKEI-----------AGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFL 309 (382)
T ss_dssp HHHHH-----------HTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----------hcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 85432 22332 444444 456666666666665555444
No 50
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=92.98 E-value=4 Score=35.59 Aligned_cols=112 Identities=7% Similarity=-0.005 Sum_probs=62.3
Q ss_pred hhhHHHHHHHhhcCCCC--C-CHHHHHHHHhhchHHHHHHH-HHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHHhhh
Q 024239 126 EGLLKGQVTDLDSEGKD--V-SLSELEYIHVHKTAKLLEAS-VVCGVIIGGGNVIEIE--RVRNYARCIGLLFQVVDDIL 199 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~~~--~-~~~~~~~i~~~KTg~lf~~~-~~~ga~la~~~~~~~~--~l~~~g~~lG~afQi~DD~l 199 (270)
...+.+-..+..|.... + |.++|..+.+.-.|..+.++ +.++.- -..+++..+ .+.++-...+...-+.||+.
T Consensus 144 ~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~ 222 (337)
T 1ps1_A 144 RNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGR-FEVPHRVFDSAVMSAMLQIAVDVNLLLNDIA 222 (337)
T ss_dssp HHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666664433 7 89999887644444433222 222211 112333322 45678888889999999999
Q ss_pred hhcccccccCCCccchhhhCC-CcHHHHh------hHHHHHHHHHHHHHHHHHHhhc
Q 024239 200 DVTKSSTVLGKTAGKDLVSDK-ATYPKLM------GIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 200 d~~~~~~~~gK~~~~Dl~~gk-~T~p~i~------~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
.+..+. .+|. .+...++ ..+.|.+.+.+.++++.+.++.
T Consensus 223 S~~kE~-----------~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~ 268 (337)
T 1ps1_A 223 SLEKEE-----------ARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYLL 268 (337)
T ss_dssp THHHHH-----------HTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-----------hcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 985332 2333 3554444 4566777777776666665543
No 51
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=89.94 E-value=2 Score=37.24 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhccC
Q 024239 174 NVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFE 251 (270)
Q Consensus 174 ~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l~ 251 (270)
+.+....+...-+-+=.+.-|.||+.| .+|++.|++|+-..++...|.-...-++..|.+.+..++
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD------------~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~ 131 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMD------------QHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG 131 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445566677788889999999966 457788999999999988887777888888888888764
No 52
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=88.73 E-value=5.3 Score=35.97 Aligned_cols=128 Identities=14% Similarity=0.009 Sum_probs=59.8
Q ss_pred hhCCCCChHHHHH---HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhc--ChhHHHHHH
Q 024239 15 LLAGGKRIRPVLC---IASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVF--GEPTAILAG 89 (270)
Q Consensus 15 ~~~~GK~lRp~l~---l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~--G~~~Ail~G 89 (270)
+...+|++.|.+- .++++.+-.-+...+.++ =...++..+.||+ .|++. ......+..+ |... +
T Consensus 56 l~~~~~~l~~~~~t~~~laar~YP~a~~e~l~li---ad~~~~~F~lDD~--~d~~~--~~l~~~~~~ll~G~~~----~ 124 (374)
T 1yyq_A 56 LKVDPKRLQASLQTIVGMVVYSWAKVSKECMADL---SIHYTYTLVLDDS--KDDPY--PTMVNYFDDLQAGREQ----A 124 (374)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHSTTSCHHHHHHH---HHHHHHHHHHTTC--CSCSH--HHHTTHHHHHHHTCCC----S
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH---HHHHHHHHhhccc--ccCcH--HHHHHHHHHHhcCCCC----C
Confidence 4456678777553 244554433222233222 2567788889999 78753 1112222221 1110 1
Q ss_pred HHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHH
Q 024239 90 DALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKL 159 (270)
Q Consensus 90 d~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~l 159 (270)
+-++..-..++.++....++.-..+++..+ .....|..++..+.+..++...|..+.+.+||..
T Consensus 125 ~Pl~~al~dl~~rl~~~~~p~~~~rf~~s~------~~~~~a~~~Ea~n~~~~p~~~~Y~~~rR~~sG~~ 188 (374)
T 1yyq_A 125 HPWWALVNEHFPNVLRHFGPFCSLNLIRST------LDFFEGCWIEQYNFGGFPGSHDYPQFLRRMNGLG 188 (374)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHHH------HHHHHHHHHHTTCCCCCTTCTTHHHHHHHHHHCH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHHHHHHHHHHhccCCCCCHHHHHHHHHhhccHH
Confidence 111121222333333334443333333322 3344566566443222256777777678899964
No 53
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=87.31 E-value=5 Score=35.50 Aligned_cols=68 Identities=9% Similarity=-0.025 Sum_probs=43.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhcc
Q 024239 171 GGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 171 a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
.|.+.+....+...-+-+=.++-|.||+.| .+|++.|++|+-..++...|.-.-.-++..|.+.+...
T Consensus 62 ~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 129 (334)
T 3rmg_A 62 YGAVTPATLHAAVSLELLHTASLVHDDVVD------------ESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQT 129 (334)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555566677888889999999976 46788999999999887777666666677777766654
No 54
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=87.25 E-value=4.3 Score=36.02 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=50.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245 (270)
Q Consensus 166 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~ 245 (270)
+++.+.|.+.+....+...-+-+=.++-|.||+.| .+|++.|++|+-..++...|.-...-++..|.+
T Consensus 63 ~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 130 (341)
T 3mzv_A 63 AAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVD------------ESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQ 130 (341)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHH
Confidence 34444454445555667777788889999999976 467888999999998887777777777788888
Q ss_pred HhhccC
Q 024239 246 ELAYFE 251 (270)
Q Consensus 246 ~L~~l~ 251 (270)
.+...+
T Consensus 131 ~l~~~~ 136 (341)
T 3mzv_A 131 LMTDTG 136 (341)
T ss_dssp HHGGGC
T ss_pred HHHhCC
Confidence 777653
No 55
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=86.32 E-value=6.1 Score=34.36 Aligned_cols=73 Identities=18% Similarity=0.038 Sum_probs=56.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGGGNVIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQA 243 (270)
Q Consensus 166 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a 243 (270)
+.+.+.|.+++....+...-+-+=.++-|.||+ .| .+|++.|++|+-..++...|.-.-.-++..|
T Consensus 51 ~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a 118 (297)
T 3m0g_A 51 ESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMD------------NDDLRRGLPTVHKKWDDATAVLAGDALQTLA 118 (297)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccC------------CCCccCCCCCchhhcChHHHHHHHHHHHHHH
Confidence 344445666666666777778888899999999 55 4578899999999999888877777888889
Q ss_pred HHHhhcc
Q 024239 244 TKELAYF 250 (270)
Q Consensus 244 ~~~L~~l 250 (270)
.+.|...
T Consensus 119 ~~~l~~~ 125 (297)
T 3m0g_A 119 FELCTDP 125 (297)
T ss_dssp HHHTTCG
T ss_pred HHHHHHh
Confidence 8888875
No 56
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=86.30 E-value=5.8 Score=34.25 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=53.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 024239 171 GGGNVIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELA 248 (270)
Q Consensus 171 a~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~ 248 (270)
.|.+++....+...-+-+=.+.-|.||+ .| .+|++.|++|+-..++...|.-.-.-++..|.+.+.
T Consensus 61 ~g~~~~~~~~~A~avEliH~asLIHDDIP~~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~ 128 (284)
T 2ftz_A 61 LGVEEEXLLDVAVAVELFHTASLIHDDLPPID------------NADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQIS 128 (284)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHhCCchhcC------------CCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666777777888999999 87 457788999999999888887777778888888888
Q ss_pred ccC
Q 024239 249 YFE 251 (270)
Q Consensus 249 ~l~ 251 (270)
..+
T Consensus 129 ~~~ 131 (284)
T 2ftz_A 129 XIG 131 (284)
T ss_dssp TTC
T ss_pred hCC
Confidence 763
No 57
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=85.90 E-value=3.2 Score=37.09 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=57.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHH
Q 024239 165 VCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQAT 244 (270)
Q Consensus 165 ~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~ 244 (270)
.+++.+.|.+.+....+...-+-+=.++-|.||+.| .+|++.|++|+-..++...|.-...-++..|.
T Consensus 63 ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~ 130 (352)
T 3nf2_A 63 VLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMD------------GDEQRRHRDTVWKVHGPAQAILVGDALFALAN 130 (352)
T ss_dssp HHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC------------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHH
Confidence 344455555555555667777788889999999977 35678899999999988877777777888888
Q ss_pred HHhhccCC
Q 024239 245 KELAYFEV 252 (270)
Q Consensus 245 ~~L~~l~~ 252 (270)
+.|..++.
T Consensus 131 ~~l~~~~~ 138 (352)
T 3nf2_A 131 EVLLELGT 138 (352)
T ss_dssp HHHHTTCS
T ss_pred HHHHhCCC
Confidence 88887643
No 58
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=85.50 E-value=16 Score=31.00 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=57.7
Q ss_pred CCHHHHHHHHhhchHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhh-hC-
Q 024239 143 VSLSELEYIHVHKTAKLLEAS-VVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLV-SD- 219 (270)
Q Consensus 143 ~~~~~~~~i~~~KTg~lf~~~-~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~-~g- 219 (270)
+|.++|..+.+.-+|..+.+. +..+. --..+++..+.+.++-...+...-+.||+..|..+... |+. .. +|
T Consensus 152 Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~-g~~----~h~~~~ 225 (300)
T 1di1_A 152 HELGHYLEYREKDVGKALLSALMRFSM-GLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEEEA-SRT----GHKEGA 225 (300)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCC--------------
T ss_pred CCHHHHHHHHhhhccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hcc----cccccc
Confidence 789999988655555443322 22222 11246677777888999999999999999998643221 210 00 00
Q ss_pred -CCcHHHHh------hHHHHHHHHHHHHHHHHHHhh
Q 024239 220 -KATYPKLM------GIENAKKFAEELFSQATKELA 248 (270)
Q Consensus 220 -k~T~p~i~------~l~~a~~~~~~~~~~a~~~L~ 248 (270)
..+...++ ..+.|.+.+.+.++++.+.++
T Consensus 226 ~~~n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~ 261 (300)
T 1di1_A 226 FLCSAVKVLAEESKLGIPATKRVLWSMTREWETVHD 261 (300)
T ss_dssp -CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22444444 356666666666665554443
No 59
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=85.42 E-value=7.3 Score=34.20 Aligned_cols=67 Identities=18% Similarity=0.084 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 024239 172 GGNVIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 172 ~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
|.+.+....+...-+-+=.+.-|.||+ .| .+|++.|++|+-..++...|.-.-.-++..|.+.|..
T Consensus 61 g~~~~~~~~~A~avEliH~aSLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~ 128 (317)
T 4f62_A 61 GDISSLTDASAAALESIHAYSLIHDDLPAMD------------NDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSN 128 (317)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSTTSC------------C-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 444455556677777788889999999 55 4678899999999998888777777788889888887
Q ss_pred c
Q 024239 250 F 250 (270)
Q Consensus 250 l 250 (270)
.
T Consensus 129 ~ 129 (317)
T 4f62_A 129 P 129 (317)
T ss_dssp T
T ss_pred c
Confidence 6
No 60
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=84.84 E-value=3.8 Score=36.75 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=42.5
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGG-GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQAT 244 (270)
Q Consensus 166 ~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~ 244 (270)
+++.+.+ .+.+.+..+...-+-+=.+.-|.||+.| .+|++.|++|+-..++...|.-.-.-++..|.
T Consensus 84 l~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 151 (360)
T 3lmd_A 84 LASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMD------------EASMRRGVPSANARWDNSVAILAGDILLAHAS 151 (360)
T ss_dssp HHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcC------------CCCCCCCCCcHHhhcChHHHHHHHHHHHHHHH
Confidence 3444455 4445555566677778889999999976 35678888898888877666655666666666
Q ss_pred HHhhccC
Q 024239 245 KELAYFE 251 (270)
Q Consensus 245 ~~L~~l~ 251 (270)
+.+..++
T Consensus 152 ~~l~~~~ 158 (360)
T 3lmd_A 152 GLMSQLG 158 (360)
T ss_dssp HHHHHHC
T ss_pred HHHHHCC
Confidence 6666553
No 61
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=84.80 E-value=7 Score=34.52 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=53.4
Q ss_pred HhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHh
Q 024239 169 IIGG-GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKEL 247 (270)
Q Consensus 169 ~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L 247 (270)
.+++ .+.+....+...-+-+=.++=|.||+.| .+|++.|++|+-..++...|.-...-++..|.+.+
T Consensus 68 ~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 135 (334)
T 3pko_A 68 TFGNAATPAQLQAGAAAIEILHVGTLIHDDVID------------DSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQV 135 (334)
T ss_dssp TTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC------------CCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 3444 4666666677777888889999999976 45678899999988888777777777777777777
Q ss_pred hcc
Q 024239 248 AYF 250 (270)
Q Consensus 248 ~~l 250 (270)
...
T Consensus 136 ~~~ 138 (334)
T 3pko_A 136 LKS 138 (334)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 62
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=84.62 E-value=9 Score=33.26 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhccC
Q 024239 172 GGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFE 251 (270)
Q Consensus 172 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l~ 251 (270)
+.+++....+...-+-+=.+.-|.||+.| .+|++.|++|+-..++...|.-...-++..|.+.+...+
T Consensus 41 ~~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~ 108 (301)
T 2q80_A 41 KVPEDKLQIIIEVTEMLHNASLLIDDIED------------NSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLD 108 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccC------------CCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 44555555667777778888899999976 457788999999999888777777777788888887763
No 63
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=84.59 E-value=6 Score=34.76 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=53.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245 (270)
Q Consensus 166 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~ 245 (270)
+++.+.|.+++....+...-+-+=.+.-|.||+.| .+|++.|++|+-..++...|.-...-++..|.+
T Consensus 54 ~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 121 (325)
T 3aqb_B 54 LSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID------------NSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQ 121 (325)
T ss_dssp HHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCCCcccccChHHHHHHHHHHHHHHHH
Confidence 34444444444444566667777788899999977 356788899999988888777777778888888
Q ss_pred Hhhcc
Q 024239 246 ELAYF 250 (270)
Q Consensus 246 ~L~~l 250 (270)
.+...
T Consensus 122 ~l~~~ 126 (325)
T 3aqb_B 122 NIATI 126 (325)
T ss_dssp HTTTC
T ss_pred HHHhC
Confidence 88765
No 64
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=83.90 E-value=6.1 Score=34.17 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=51.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHH
Q 024239 167 GVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKE 246 (270)
Q Consensus 167 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~ 246 (270)
++.+.|.+++....+...-+-+=.++=|.||+.| .+|++.|++|+-..++...|.-.-.-++..|.+.
T Consensus 60 ~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~ 127 (289)
T 2azj_A 60 FTVALGGDIKDSYGGALAIEILHSASLALCDIVD------------LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRI 127 (289)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC------------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3344444544444566666777788889999966 4577889999998888877777777777777777
Q ss_pred h-hccC
Q 024239 247 L-AYFE 251 (270)
Q Consensus 247 L-~~l~ 251 (270)
+ ...+
T Consensus 128 l~~~~~ 133 (289)
T 2azj_A 128 IQTSYG 133 (289)
T ss_dssp HHHHHC
T ss_pred HHhcCc
Confidence 7 6553
No 65
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=83.87 E-value=9.3 Score=33.57 Aligned_cols=73 Identities=15% Similarity=0.065 Sum_probs=52.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245 (270)
Q Consensus 166 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~ 245 (270)
+++.+.+.+++....+...-+-+=.++=|.||+.| .+|++.|++|+-..++...|.-...-++..|.+
T Consensus 49 ~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 116 (330)
T 1wmw_A 49 YSALAHGAPLEAGLEAATALELFQNWVLVHDDIED------------GSEERRGRPALHRLHPMPLALNAGDAMHAEMWG 116 (330)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccccc------------CCCCCCCCCccccccCchHHHHHHHHHHHHHHH
Confidence 33444455555555667777777888999999976 356788899998888877776666667777777
Q ss_pred Hhhcc
Q 024239 246 ELAYF 250 (270)
Q Consensus 246 ~L~~l 250 (270)
.+..+
T Consensus 117 ~l~~~ 121 (330)
T 1wmw_A 117 LLAEG 121 (330)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 66
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=83.77 E-value=4 Score=35.56 Aligned_cols=73 Identities=21% Similarity=0.171 Sum_probs=50.7
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCcCccchhhhcChhHHHHHHHHHHHHHH
Q 024239 30 SCELVGGDESLVMPMACALEMTHTMSLIHDDLPALD------------NDDLRRGKPTNHKVFGEPTAILAGDALLALAF 97 (270)
Q Consensus 30 ~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D------------~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~ 97 (270)
++.+.|.+++....+...-+.+=.++=|.||+ +| .++.+.|++|+-..+|...|--...-+...|.
T Consensus 189 ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDi--lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~ 266 (301)
T 1rtr_A 189 AADIANVDDTTKEHLESYSYHLGMMFQIKDDL--LDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAV 266 (301)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666777777888899999999 76 57788899999999988888777788888888
Q ss_pred HHHHcCc
Q 024239 98 EHVAAKT 104 (270)
Q Consensus 98 ~~l~~~~ 104 (270)
+.|..+.
T Consensus 267 ~~L~~l~ 273 (301)
T 1rtr_A 267 DELTQID 273 (301)
T ss_dssp HHHHTSC
T ss_pred HHHHhCC
Confidence 8888764
No 67
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=82.73 E-value=8 Score=33.56 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhcc
Q 024239 176 IEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 176 ~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
+....+...-+-+=.+.=|.||+.| .+|++.|++|+-..++...|.-.-.-++..|.+.+...
T Consensus 61 ~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 123 (299)
T 1v4e_A 61 EDAISSLAALELVHLASLLHDDVID------------GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEI 123 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCC------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 4344566666777778889999977 45678899999888887776666666677777777655
No 68
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=82.33 E-value=12 Score=33.08 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhccC
Q 024239 172 GGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFE 251 (270)
Q Consensus 172 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l~ 251 (270)
+.+++....+...-+-+=.+.=|.||+.| .+|++.|++|+-..++...|.-...-++..|.+.+..+.
T Consensus 56 ~~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 123 (340)
T 2e8v_A 56 NLPKDQLAIVSQIVELLHNSSLLIDDIED------------NAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLT 123 (340)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcC
Confidence 44555555566677777788889999976 457888999999999888887777888888888888774
Q ss_pred C
Q 024239 252 V 252 (270)
Q Consensus 252 ~ 252 (270)
.
T Consensus 124 ~ 124 (340)
T 2e8v_A 124 T 124 (340)
T ss_dssp C
T ss_pred C
Confidence 3
No 69
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=81.72 E-value=5.8 Score=35.09 Aligned_cols=70 Identities=24% Similarity=0.188 Sum_probs=52.9
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 024239 169 IIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELA 248 (270)
Q Consensus 169 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~ 248 (270)
.+.|.+++....+...-+-+=.++-|.||+.| .+|++.|++|+-..++...|.-...-++..|.+.+.
T Consensus 59 ~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 126 (342)
T 1wy0_A 59 EAVGGDPLRAIYPAVAIELIHNYSLVHDDIMD------------MDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVA 126 (342)
T ss_dssp TTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHCCccc------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHH
Confidence 33344444444566667777788899999977 457788999999999888887777788888888888
Q ss_pred cc
Q 024239 249 YF 250 (270)
Q Consensus 249 ~l 250 (270)
.+
T Consensus 127 ~~ 128 (342)
T 1wy0_A 127 RA 128 (342)
T ss_dssp TC
T ss_pred Hc
Confidence 76
No 70
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=81.25 E-value=17 Score=31.48 Aligned_cols=73 Identities=21% Similarity=0.149 Sum_probs=53.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGGGNVIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQA 243 (270)
Q Consensus 166 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a 243 (270)
+++.+.|.+++....+...-+-+=.+.=|.||+ .| .+|++.|++|+-..++...|.-.-.-++..|
T Consensus 54 ~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D------------~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a 121 (299)
T 1rqj_A 54 ATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD------------DDDLRRGLPTCHVKFGEANAILAGDALQTLA 121 (299)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCCEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhc------------CCCCCCCCCChhhhcChHHHHHHHHHHHHHH
Confidence 344444556555555666667777788899999 87 4577889999999998877776677777888
Q ss_pred HHHhhcc
Q 024239 244 TKELAYF 250 (270)
Q Consensus 244 ~~~L~~l 250 (270)
.+.|...
T Consensus 122 ~~~l~~~ 128 (299)
T 1rqj_A 122 FSILSDA 128 (299)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 8888764
No 71
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=80.65 E-value=21 Score=33.78 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=66.5
Q ss_pred hhhHHHHHHHhhcCC--CCCCHHHHHHHHhhchHHHH-HHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhh
Q 024239 126 EGLLKGQVTDLDSEG--KDVSLSELEYIHVHKTAKLL-EASVVCGVIIGG-GNVIEIERV---RNYARCIGLLFQVVDDI 198 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~lf-~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~afQi~DD~ 198 (270)
..++.+-..+..|.. ..+|.++|.....--+|..+ ...+.+|+ +. .+++..+-+ .++-+..+...-+.||+
T Consensus 376 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI 453 (554)
T 3g4d_A 376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGM--GDIVTPETFKWAASDPKIIQASTIICRFMDDV 453 (554)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTS--CTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhc--CCCCCHHHHHhccccHHHHHHHHHHHHHhccc
Confidence 344555555555532 23899999888644444432 22222221 22 355555443 46788899999999999
Q ss_pred hhhcccccccCCCccchhhhCCC-cHHHHh------hHHHHHHHHHHHHHHHHHHhhc
Q 024239 199 LDVTKSSTVLGKTAGKDLVSDKA-TYPKLM------GIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 199 ld~~~~~~~~gK~~~~Dl~~gk~-T~p~i~------~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
..+-.+. .+|.. +....+ ..|.|.+.+++.++.+.+.|+.
T Consensus 454 ~S~k~E~-----------~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 500 (554)
T 3g4d_A 454 AEHKFKH-----------RREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQ 500 (554)
T ss_dssp HHHCC-----------------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhh-----------ccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9985432 12332 444433 4678888899999999887764
No 72
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=80.33 E-value=10 Score=33.07 Aligned_cols=74 Identities=22% Similarity=0.095 Sum_probs=55.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGGGNVIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQA 243 (270)
Q Consensus 166 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a 243 (270)
+.+.+.|.+++....+...-+-+=.++=|.||+ .| .+|++.|++|+-..++...|.-.-.-++..|
T Consensus 54 ~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a 121 (304)
T 3lsn_A 54 AACEALGGKPEQANGAACAVELIHAYSLVHDDLPAMD------------DDDLRRGQPTTHKAFDEACAILAGDGLQSLA 121 (304)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCccCCCCchHhhcCHHHHHHHHHHHHHHH
Confidence 334444555555556666777788889999999 55 4578899999999998888777777788888
Q ss_pred HHHhhccC
Q 024239 244 TKELAYFE 251 (270)
Q Consensus 244 ~~~L~~l~ 251 (270)
.+.|...+
T Consensus 122 ~~~l~~~~ 129 (304)
T 3lsn_A 122 FSALLDPA 129 (304)
T ss_dssp HHHHHCTT
T ss_pred HHHHHHhc
Confidence 88888763
No 73
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=80.21 E-value=26 Score=33.11 Aligned_cols=110 Identities=10% Similarity=0.007 Sum_probs=66.5
Q ss_pred hhHHHHHHHhhcCC--CCCCHHHHHHHHhhchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 024239 127 GLLKGQVTDLDSEG--KDVSLSELEYIHVHKTAKL-LEASVVCGVIIGG-GNVIEIERV---RNYARCIGLLFQVVDDIL 199 (270)
Q Consensus 127 ~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~afQi~DD~l 199 (270)
.++.+-..+..|.. ..+|.++|.....--+|.. +...+.+++ +. .+++..+-+ -++-+..+...-+.||+.
T Consensus 375 ~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~ 452 (555)
T 3n0f_A 375 DLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPSHIFRLCNDLA 452 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHHHHHHHhccch
Confidence 34444445555532 2389999988764444433 222222222 32 455554433 467788889999999999
Q ss_pred hhcccccccCCCccchhhhCCC-cHHHHh------hHHHHHHHHHHHHHHHHHHhhc
Q 024239 200 DVTKSSTVLGKTAGKDLVSDKA-TYPKLM------GIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 200 d~~~~~~~~gK~~~~Dl~~gk~-T~p~i~------~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
.+-.+. .+|.. +....+ ..|.|.+.+++.++.+.+.|+.
T Consensus 453 S~~~E~-----------~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 498 (555)
T 3n0f_A 453 SASAEI-----------ARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNK 498 (555)
T ss_dssp HHHHHH-----------TTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhh-----------hcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 885322 23333 444433 4678888889999999887764
No 74
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=79.94 E-value=35 Score=32.28 Aligned_cols=110 Identities=13% Similarity=0.055 Sum_probs=66.7
Q ss_pred hhHHHHHHHhhcC--CCCCCHHHHHHHHhhchHHHHH-HHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHHHHhhhh
Q 024239 127 GLLKGQVTDLDSE--GKDVSLSELEYIHVHKTAKLLE-ASVVCGVIIGGGNVIEIER---VRNYARCIGLLFQVVDDILD 200 (270)
Q Consensus 127 ~~~~GQ~~d~~~~--~~~~~~~~~~~i~~~KTg~lf~-~~~~~ga~la~~~~~~~~~---l~~~g~~lG~afQi~DD~ld 200 (270)
.++.+-..+..|. +.-+|.++|.....--+|..+. ..+.+|. -..+.+..+- ..++-+..+...-+.||+..
T Consensus 373 ~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~--~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S 450 (550)
T 3m00_A 373 EIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM--KSATEQDFEWLSKNPKILEASVIICRVIDDTAT 450 (550)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC--TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC--CCCcHHHHHhhcccHHHHHHHhhhheeeccchh
Confidence 3444555555553 2238999998886444444322 2222221 1245555443 24677888999999999998
Q ss_pred hcccccccCCCccchhhhCCC-cHHHHh------hHHHHHHHHHHHHHHHHHHhhc
Q 024239 201 VTKSSTVLGKTAGKDLVSDKA-TYPKLM------GIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 201 ~~~~~~~~gK~~~~Dl~~gk~-T~p~i~------~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
+..+ ..+|.. +....+ ..|.|.+.+++.++.+.+.++.
T Consensus 451 ~k~E-----------~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 495 (550)
T 3m00_A 451 YEVE-----------KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINE 495 (550)
T ss_dssp HHHH-----------HHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------HhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7432 233443 444433 4678888889999999887763
No 75
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=79.80 E-value=7.9 Score=34.08 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=50.5
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCcCccchhhhcChhHHHHHHHHHHHHHH
Q 024239 30 SCELVGGDESLVMPMACALEMTHTMSLIHDDLPALD------------NDDLRRGKPTNHKVFGEPTAILAGDALLALAF 97 (270)
Q Consensus 30 ~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D------------~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~ 97 (270)
++.+.|.+++....+...-+.+=.++=|.||+ +| .++.|.|++|+-..+|...|--...-+...|.
T Consensus 222 Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDi--LD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~ 299 (324)
T 3uca_A 222 GAVLAEASEGDIKKLEGFGYKLGLAFQIKDDI--LDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECI 299 (324)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556665666777777888899999999 55 35678899999999999988888888899999
Q ss_pred HHHHcCc
Q 024239 98 EHVAAKT 104 (270)
Q Consensus 98 ~~l~~~~ 104 (270)
+.|..+.
T Consensus 300 ~~L~~l~ 306 (324)
T 3uca_A 300 EILSSIK 306 (324)
T ss_dssp HHHHTSS
T ss_pred HHHHhCC
Confidence 9998874
No 76
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=79.31 E-value=4.9 Score=35.05 Aligned_cols=72 Identities=22% Similarity=0.080 Sum_probs=48.7
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCcCccchhhhcChhHHHHHHHHHHHHHH
Q 024239 30 SCELVGGDESLVMPMACALEMTHTMSLIHDDLPALD------------NDDLRRGKPTNHKVFGEPTAILAGDALLALAF 97 (270)
Q Consensus 30 ~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D------------~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~ 97 (270)
++.+.|.+++....+...-+.+=.++=|.||+ +| .++.+.|++|+-..+|...|--...-+...|.
T Consensus 197 ga~laga~~~~~~~l~~~g~~lGlaFQI~DDi--lD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~ 274 (302)
T 3p8l_A 197 GGVLANQTEEVIGLLTQFAHHYGLAFQIRDDL--LDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGS 274 (302)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666777777888899999999 55 35678888999999988888877777788888
Q ss_pred HHHHcC
Q 024239 98 EHVAAK 103 (270)
Q Consensus 98 ~~l~~~ 103 (270)
+.|..+
T Consensus 275 ~~L~~~ 280 (302)
T 3p8l_A 275 AVLEKI 280 (302)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888776
No 77
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=79.22 E-value=15 Score=32.01 Aligned_cols=73 Identities=14% Similarity=0.040 Sum_probs=53.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGGGNVIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQA 243 (270)
Q Consensus 166 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a 243 (270)
+.+.+.|.+.+....+...-+-+=.+.-|.||+ .| .+|++.|++|+-..++...|.-.-.-++..|
T Consensus 60 ~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD------------~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a 127 (313)
T 3lom_A 60 LAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMD------------NDDLRRGKPSCHKAFDEATAILVGDGMQALA 127 (313)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCccccc------------CCCccCCCCCchhhcChHHHHHHHHHHHHHH
Confidence 344455666666666777778888889999999 55 4577889999998888777766666677777
Q ss_pred HHHhhcc
Q 024239 244 TKELAYF 250 (270)
Q Consensus 244 ~~~L~~l 250 (270)
.+.|...
T Consensus 128 ~~~l~~~ 134 (313)
T 3lom_A 128 IEVLLMR 134 (313)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
No 78
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=78.99 E-value=9.3 Score=33.64 Aligned_cols=71 Identities=21% Similarity=0.083 Sum_probs=53.9
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHH
Q 024239 169 IIGGGNVIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKE 246 (270)
Q Consensus 169 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~ 246 (270)
.+.|.+.+....+...-+-+=.+.-|.||+ .| .+|++.|++|+-..++...|.-.-.-++..|.+.
T Consensus 63 ~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD------------~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~ 130 (324)
T 3ts7_A 63 QTIGVAADLLDGPACAVEFIHVYSLIHDDLPAMD------------DDDLRRGKPTCHKAYDEATAILAGDGLQALAFHV 130 (324)
T ss_dssp HHHTCCGGGTHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhhcCccccc------------CCCccCCCCchhhhcChHHHHHHHHHHHHHHHHH
Confidence 333445555556666777788889999999 55 4678899999999998888777777788888888
Q ss_pred hhccC
Q 024239 247 LAYFE 251 (270)
Q Consensus 247 L~~l~ 251 (270)
|...+
T Consensus 131 l~~~~ 135 (324)
T 3ts7_A 131 LAQDP 135 (324)
T ss_dssp HHHCT
T ss_pred HHhcc
Confidence 87663
No 79
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=78.06 E-value=7.6 Score=34.64 Aligned_cols=63 Identities=16% Similarity=0.023 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 024239 174 NVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELA 248 (270)
Q Consensus 174 ~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~ 248 (270)
+.+....+...-+-+=.++-|.||+.| .+|++.|++|+-..++...|.-...-++..|.+.|.
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 125 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIID------------RGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVL 125 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcccc------------CCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 344444566677778889999999976 456788999999999988888777778888888874
No 80
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=77.78 E-value=22 Score=30.61 Aligned_cols=71 Identities=25% Similarity=0.216 Sum_probs=49.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHH
Q 024239 168 VIIGGGNVIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245 (270)
Q Consensus 168 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~ 245 (270)
+.+.|.+++....+...-+-+=.+.-|.||+ .| .+|++.|++|+-..++...|.-.-.-++..|.+
T Consensus 64 ~~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~ 131 (293)
T 2j1p_A 64 CELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMD------------NDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFE 131 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHH
Confidence 3334555555445666666777788899998 65 457788999999888877766666666777777
Q ss_pred Hhhcc
Q 024239 246 ELAYF 250 (270)
Q Consensus 246 ~L~~l 250 (270)
.+...
T Consensus 132 ~l~~~ 136 (293)
T 2j1p_A 132 HLASA 136 (293)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 81
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=77.78 E-value=15 Score=31.96 Aligned_cols=60 Identities=18% Similarity=0.086 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhcc
Q 024239 179 ERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 179 ~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
..+...-+-+=.+.-|.||+ .| .+|++.|++|+-..++...|.-...-++..|.+.|...
T Consensus 73 ~~~A~aiEliH~aSLIHDDiP~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~ 134 (309)
T 3pde_A 73 WRPVMALELLHTYSLIHDDLPAMD------------NDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTAT 134 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777889999999 77 46788999999999998888877788888899888875
No 82
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=76.97 E-value=2.9 Score=36.39 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 024239 174 NVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 174 ~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
+++....+...-+-+=.+.-|.||+.|= +|++.|++|+-..++...|.-.-.-++..|.+.+..
T Consensus 60 ~~~~~~~~A~avEliH~asLIHDDi~D~------------s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~ 123 (295)
T 3ipi_A 60 SYSRSLNAALAVEMMHSASLIHDDLLDQ------------GLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISP 123 (295)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHHH------------HTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcCcCC------------CCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 3344445666677788899999999762 456667777655555444444444444555554443
No 83
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=76.55 E-value=35 Score=29.14 Aligned_cols=61 Identities=21% Similarity=0.138 Sum_probs=42.2
Q ss_pred CCHHHHHHHHhhchHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024239 143 VSLSELEYIHVHKTAKLLEAS-VVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKS 204 (270)
Q Consensus 143 ~~~~~~~~i~~~KTg~lf~~~-~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 204 (270)
+|.++|..+.+.-+|..+.+. +..+. =-..+++..+...++-...+...-+.||+..|..+
T Consensus 166 Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 166 MGLGGYLEYRERDVGKELLAALMRFSM-GLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp CCHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhhcccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 789999988765566443322 22221 11246677677888999999999999999999643
No 84
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=75.32 E-value=30 Score=30.49 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=53.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHH
Q 024239 167 GVIIGGGNVIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQAT 244 (270)
Q Consensus 167 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~ 244 (270)
++.+.|.+++....+...-+-+=.+.-|.||+ .| .+|++.|++|+-..++...|.-.-.-++..|.
T Consensus 96 ~~~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 163 (335)
T 2h8o_A 96 SVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMD------------DDDLRRGQPTVHRKFDEATAILAGDSLLTLAF 163 (335)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCcCCCCCcHhhhcChHHHHHHHHHHHHHHH
Confidence 34444556555445666677777788899999 76 45778899999999988877777777788888
Q ss_pred HHhhcc
Q 024239 245 KELAYF 250 (270)
Q Consensus 245 ~~L~~l 250 (270)
+.|...
T Consensus 164 ~~l~~~ 169 (335)
T 2h8o_A 164 DIIASD 169 (335)
T ss_dssp HHHHST
T ss_pred HHHHHh
Confidence 888765
No 85
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=74.12 E-value=23 Score=30.90 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 024239 176 IEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 176 ~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
+....+...-+-+=.++-|.||+ .| .+|++.|++|+-..++-..|.-.-.-++..|.+.|..
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~ 137 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMD------------NAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSN 137 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccC------------CCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555666777788999999 66 4578889999998888777766666677777777765
No 86
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=74.11 E-value=13 Score=34.03 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=43.6
Q ss_pred hhHHHHHHHhhcC--CCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcC-CCHHHHH--HHHHHHHHHHHHHHHHHhhhhh
Q 024239 127 GLLKGQVTDLDSE--GKDVSLSELEYIHVHKTAKLLEASVVCGVIIGG-GNVIEIE--RVRNYARCIGLLFQVVDDILDV 201 (270)
Q Consensus 127 ~~~~GQ~~d~~~~--~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~-~~~~~~~--~l~~~g~~lG~afQi~DD~ld~ 201 (270)
..+.+-..+..|. +..+|.++|..+. ..||....+.+ +....+. ..++..+ .+.++-+..+...-+.||+..|
T Consensus 266 ~~~~a~l~EA~W~~~g~vPsleEYl~~R-~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~Sy 343 (433)
T 3v1v_A 266 RLHLGYLAEGAWAQTGHVPEVWEYLAMR-QFNNFRPCPTI-TDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYSY 343 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHH-HHSSSTTTGGG-HHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHhHHHHHHH-HHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHHH
Confidence 3445555555443 2237899998875 45654311111 1111221 2344332 4667788888899999999998
Q ss_pred ccc
Q 024239 202 TKS 204 (270)
Q Consensus 202 ~~~ 204 (270)
..+
T Consensus 344 ~kE 346 (433)
T 3v1v_A 344 TKE 346 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 87
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=73.96 E-value=31 Score=29.75 Aligned_cols=64 Identities=19% Similarity=0.085 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhcc
Q 024239 175 VIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 175 ~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
.+....+...-+-+=.++-|.||+ .| .+|++.|++|+-..++...|.-.-.-++..|.+.|...
T Consensus 59 ~~~~~~~A~aiEliH~aSLIHDDIp~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 124 (291)
T 3npk_A 59 LNQALDVALALEFIHTYSLIHDDLPAMD------------NADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA 124 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666777788899999999 55 45778899999999888777767777778888877654
No 88
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=72.70 E-value=6.1 Score=35.14 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245 (270)
Q Consensus 166 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~ 245 (270)
+++.+.|.+.+....+...-+-+=.++-|.||+.| .+|++.|++|+-..++...|.-.-.-++..|.+
T Consensus 75 l~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~ 142 (345)
T 3oyr_A 75 AAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD------------GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFE 142 (345)
T ss_dssp HHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC---------------------CCCSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC------------CCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHH
Confidence 34444454444455666777788889999999966 346677777776666655555555555666666
Q ss_pred Hhhcc
Q 024239 246 ELAYF 250 (270)
Q Consensus 246 ~L~~l 250 (270)
.+...
T Consensus 143 ~l~~~ 147 (345)
T 3oyr_A 143 LMVET 147 (345)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 66544
No 89
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=71.39 E-value=8.4 Score=33.52 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCcCccchhhhcChhHHHHHHHHHHHHHHHHHHcCc
Q 024239 37 DESLVMPMACALEMTHTMSLIHDDLPALD------------NDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKT 104 (270)
Q Consensus 37 ~~~~~~~lA~avElih~asLihDDI~~~D------------~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~ 104 (270)
+++....+...-+.+=.++=|.||+ +| .++.+.|++|+-..+|...|--...-+...|.+.|..+.
T Consensus 207 ~~~~~~~l~~~g~~lG~aFQI~DDi--lD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 284 (302)
T 3p8r_A 207 GRAMLPHLDRYAEAVGLAFQVQDDI--LDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIP 284 (302)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHH--HHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444455666677788889999999 65 346788999999999998888888888999999998864
No 90
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=69.97 E-value=11 Score=32.25 Aligned_cols=74 Identities=9% Similarity=-0.046 Sum_probs=50.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHH
Q 024239 167 GVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKE 246 (270)
Q Consensus 167 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~ 246 (270)
++.+.|.+.+....+...-+-+=.+.-|.||+..- -+|.+.|++|+-..++...|.-.-.-++..|.+.
T Consensus 51 ~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~d-----------D~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 119 (274)
T 3kra_B 51 ACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLT-----------DGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFEL 119 (274)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCS-----------SSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCccc-----------CCccCCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 34444555555556677777888899999999721 1234567777777777776666667777788887
Q ss_pred hhccC
Q 024239 247 LAYFE 251 (270)
Q Consensus 247 L~~l~ 251 (270)
|....
T Consensus 120 l~~~~ 124 (274)
T 3kra_B 120 LAGSV 124 (274)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 77653
No 91
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=69.71 E-value=17 Score=32.44 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhcc
Q 024239 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 181 l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
+...-+-+=.++=|.||+.| .+|+|.|++|+-..++...|.-...-+...|.+.+..+
T Consensus 100 la~aiEliH~asLiHDDimD------------~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~ 157 (368)
T 2q58_A 100 LGWVVEAIQALILIADDIMD------------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFEL 157 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhhccc------------CCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 44444566677788999976 46789999999888876666555555555565555443
No 92
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=66.89 E-value=26 Score=31.42 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHh----------------hHHHHHHHHHH
Q 024239 175 VIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLM----------------GIENAKKFAEE 238 (270)
Q Consensus 175 ~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~----------------~l~~a~~~~~~ 238 (270)
.+.+-.+...-+-+=.+.=|.||+.| .+|++.|++|+-..+ +...|.-.-.-
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD------------~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~ 154 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIID------------SSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDM 154 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------------C-----------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcC------------CCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHH
Confidence 45555566667777788899999976 457788888888764 65555555566
Q ss_pred HHHHHHHHhhcc
Q 024239 239 LFSQATKELAYF 250 (270)
Q Consensus 239 ~~~~a~~~L~~l 250 (270)
++..|.+.+...
T Consensus 155 Ll~~A~~~l~~~ 166 (380)
T 3lk5_A 155 ALVWAEDMLQDS 166 (380)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHc
Confidence 667777777664
No 93
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=66.03 E-value=88 Score=29.34 Aligned_cols=109 Identities=10% Similarity=0.065 Sum_probs=63.7
Q ss_pred hHHHHHHHhhcCC--CCCCHHHHHHHHhhchHHH-HHHHHHHHHHhcC-CCHHHHHH---HHHHHHHHHHHHHHHHhhhh
Q 024239 128 LLKGQVTDLDSEG--KDVSLSELEYIHVHKTAKL-LEASVVCGVIIGG-GNVIEIER---VRNYARCIGLLFQVVDDILD 200 (270)
Q Consensus 128 ~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~-~~~~~~~~---l~~~g~~lG~afQi~DD~ld 200 (270)
++.+-..+..|.. ..+|.++|......-+|.. +......+ ++. .+++..+- ..++-+..+...-+.||+..
T Consensus 367 l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~--~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S 444 (543)
T 2ong_A 367 LADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFR--VTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGT 444 (543)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHH--HSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH--cCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccch
Confidence 3344444444432 2378999988764333332 22222222 233 44554433 24577777888889999988
Q ss_pred hcccccccCCCccchhhhCCC-cHHHHh------hHHHHHHHHHHHHHHHHHHhhc
Q 024239 201 VTKSSTVLGKTAGKDLVSDKA-TYPKLM------GIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 201 ~~~~~~~~gK~~~~Dl~~gk~-T~p~i~------~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
+-.+ ...|.. +...++ ..+.|.+.+++.++.+.+.+++
T Consensus 445 ~~~E-----------~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~ 489 (543)
T 2ong_A 445 SVEE-----------VSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNA 489 (543)
T ss_dssp SHHH-----------HHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhc-----------cccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7432 233333 444443 4677888888899999988886
No 94
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=65.89 E-value=20 Score=31.27 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhccC
Q 024239 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFE 251 (270)
Q Consensus 180 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l~ 251 (270)
.+...-+-+=.++-|.||+.| .+|++.|++|+-..++...|.-...-++..|.+.+..++
T Consensus 61 ~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 120 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVID------------KATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG 120 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----------------------------CCSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCC------------CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc
Confidence 455556667778899999966 356778888888777666666566666666666666553
No 95
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=63.57 E-value=41 Score=29.57 Aligned_cols=58 Identities=22% Similarity=0.238 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhcc
Q 024239 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 181 l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
+...-+-+=.++-|.||+.| .+|++.|++|+-..++...|.-.-.-++..|.+.+..+
T Consensus 92 ~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 149 (348)
T 3apz_A 92 IAEITEMIHVASLLHDDVLD------------DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAAL 149 (348)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccC------------CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhC
Confidence 44455566667789999976 35678888888888877766666666677777766655
No 96
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=60.17 E-value=22 Score=30.28 Aligned_cols=72 Identities=6% Similarity=-0.020 Sum_probs=43.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245 (270)
Q Consensus 166 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~ 245 (270)
+++.+.|.+.+....+...-+-+=.+.-|.||+.|- +. + .|++|+-..++...|.-.-.-++..|.+
T Consensus 55 ~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~D~--d~-R----------RG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 121 (273)
T 3qkc_B 55 AACELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLT--DG-P----------MSKSEIQHKFDPNIELLTGDGIIPFGLE 121 (273)
T ss_dssp HHHHHTTCCGGGTHHHHHHHHHHHHHHHHHHSCCBT--TB-C----------SSSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccC--cc-C----------CCCCCchhhcCHHHHHHHHHHHHHHHHH
Confidence 344444556555556777778888899999999874 21 3 3444554445555554444555556666
Q ss_pred Hhhcc
Q 024239 246 ELAYF 250 (270)
Q Consensus 246 ~L~~l 250 (270)
.|...
T Consensus 122 ~l~~~ 126 (273)
T 3qkc_B 122 LMARS 126 (273)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66544
No 97
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=59.96 E-value=32 Score=32.50 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=52.6
Q ss_pred CCHHHHHHHHhhchHHH-HHHHHHHHHHhcC-CCHHH-HHH---HHHHHHHHHHHHHHHHhhhhhcccccccCCCccchh
Q 024239 143 VSLSELEYIHVHKTAKL-LEASVVCGVIIGG-GNVIE-IER---VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDL 216 (270)
Q Consensus 143 ~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~-~~~~~-~~~---l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl 216 (270)
+|.++|......-+|.. +......| ++. .+++. .+- ..++-+..+...-+.||+..+-.+.
T Consensus 390 Pt~eEYl~~~~vS~g~~~l~~~~~~~--~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~----------- 456 (549)
T 1n1b_A 390 PSLDEYLNIAKISVASPAIISPTYFT--FANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFEL----------- 456 (549)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHTT--STTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC-----------------
T ss_pred CCHHHHHHhcccchhHHHHHHHHHHH--cCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhh-----------
Confidence 78999988764333332 21211111 122 23343 332 3467778888899999998875332
Q ss_pred hhCCC-cHHHHh------hHHHHHHHHHHHHHHHHHHhhc
Q 024239 217 VSDKA-TYPKLM------GIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 217 ~~gk~-T~p~i~------~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
..|.. +...++ ..|.|.+.+++.++++.+.++.
T Consensus 457 ~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 496 (549)
T 1n1b_A 457 ARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNT 496 (549)
T ss_dssp ---CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23333 444444 4678888889999999887764
No 98
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=54.19 E-value=48 Score=29.82 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHH--HHHHHHHHHHHHHHHhhc
Q 024239 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIEN--AKKFAEELFSQATKELAY 249 (270)
Q Consensus 181 l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~--a~~~~~~~~~~a~~~L~~ 249 (270)
+...-+-+=.++=|.||+.| .+|++.|++|+-..++... |.-...-+...|...|..
T Consensus 110 lA~aiEliH~asLIHDDImD------------~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~ 168 (395)
T 2ihi_A 110 LAWCIEILQAAFLVADDIMD------------KGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEI 168 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------------TCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc------------CCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666678899999966 3567778888765554443 333333344455555554
No 99
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=54.17 E-value=81 Score=29.83 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=54.2
Q ss_pred hHHHHHHHhhcC--CCCCCHHHHHHHHhhchHHH-HHHHHHHHHHhcC-CCHHHHHH---HHHHHHHHHHHHHHHHhhhh
Q 024239 128 LLKGQVTDLDSE--GKDVSLSELEYIHVHKTAKL-LEASVVCGVIIGG-GNVIEIER---VRNYARCIGLLFQVVDDILD 200 (270)
Q Consensus 128 ~~~GQ~~d~~~~--~~~~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~-~~~~~~~~---l~~~g~~lG~afQi~DD~ld 200 (270)
++.+-..+..|. +..+|.++|......-+|.. +......+ ++. .+++..+- ..++-+..+...-+.||+..
T Consensus 394 l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~--~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S 471 (569)
T 2j5c_A 394 LIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFR--LTDSIEEEAAESMHKYHDIVRASCTILRLADDMGT 471 (569)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHH--SCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH--cCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccch
Confidence 334444444443 22378999988763333322 22222222 222 34444433 24577777888889999988
Q ss_pred hcccccccCCCccchhhhCCC-cHHHHh------hHHHHHHHHHHHHHHHHHHhh
Q 024239 201 VTKSSTVLGKTAGKDLVSDKA-TYPKLM------GIENAKKFAEELFSQATKELA 248 (270)
Q Consensus 201 ~~~~~~~~gK~~~~Dl~~gk~-T~p~i~------~l~~a~~~~~~~~~~a~~~L~ 248 (270)
+-.+. ..|.. +...++ ..|.|.+.+++.++.+.+.|+
T Consensus 472 ~~~E~-----------~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln 515 (569)
T 2j5c_A 472 SLDEV-----------ERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMN 515 (569)
T ss_dssp ---------------------CCHHHHC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhc-----------ccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 85432 12222 233333 346677777777777777655
No 100
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=51.89 E-value=32 Score=30.71 Aligned_cols=61 Identities=21% Similarity=0.109 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHH---HHHHHHhh
Q 024239 176 IEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF---SQATKELA 248 (270)
Q Consensus 176 ~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~---~~a~~~L~ 248 (270)
+....+...-+-+=.++=|.||+.| .+|++.|++|+-..++...|.-...-+. ..|.+.|.
T Consensus 95 ~~~~~~A~avEllH~asLIHDDImD------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~ 158 (368)
T 2her_A 95 DSIYLLGWVVEAIQALILIADDIMD------------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELS 158 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc------------CCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666777788999999976 4577888999888777665554444444 45554444
No 101
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=51.37 E-value=68 Score=31.81 Aligned_cols=109 Identities=16% Similarity=0.083 Sum_probs=61.9
Q ss_pred hHHHHHHHhhcC--CCCCCHHHHHHHHhhchHHHH--HHHHHHHHHhcC-CCHHHHHHHH-----HHHHHHHHHHHHHHh
Q 024239 128 LLKGQVTDLDSE--GKDVSLSELEYIHVHKTAKLL--EASVVCGVIIGG-GNVIEIERVR-----NYARCIGLLFQVVDD 197 (270)
Q Consensus 128 ~~~GQ~~d~~~~--~~~~~~~~~~~i~~~KTg~lf--~~~~~~ga~la~-~~~~~~~~l~-----~~g~~lG~afQi~DD 197 (270)
++.+-..+..|. +..+|.++|.....--+|... ..++..+ ++. .+++..+-.. ++-+..+...-+.||
T Consensus 637 l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~ND 714 (817)
T 3sdr_A 637 YLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTELNSLISRLADD 714 (817)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHHHHHHHHHHhcc
Confidence 344444444443 223799999887643333322 2222222 222 3555555443 677888899999999
Q ss_pred hhhhcccccccCCCccchhhhCCC-cHHHHh-------hHHHHHHHHHHHHHHHHHHhhc
Q 024239 198 ILDVTKSSTVLGKTAGKDLVSDKA-TYPKLM-------GIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 198 ~ld~~~~~~~~gK~~~~Dl~~gk~-T~p~i~-------~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
+..+..+. .+|.. +....| ..|.|.+.+++.++.+.+.|++
T Consensus 715 i~S~k~E~-----------~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~ 763 (817)
T 3sdr_A 715 TKTYKAEK-----------ARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTR 763 (817)
T ss_dssp HHSSCC-----------------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHH-----------hcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99885432 22222 333333 3567788888888888887764
No 102
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=50.97 E-value=75 Score=31.36 Aligned_cols=109 Identities=13% Similarity=0.027 Sum_probs=61.5
Q ss_pred hHHHHHHHhhcC--CCCCCHHHHHHHHhhchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q 024239 128 LLKGQVTDLDSE--GKDVSLSELEYIHVHKTAKL-LEASVVCGVIIGG-GNVIEIERV---RNYARCIGLLFQVVDDILD 200 (270)
Q Consensus 128 ~~~GQ~~d~~~~--~~~~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~afQi~DD~ld 200 (270)
.+.+-..+..|. +.-+|.++|.....--+|.. +...+..+ ++. .+++..+-. .++-+..+...-+.||+..
T Consensus 609 l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S 686 (785)
T 3s9v_A 609 QLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALF--TGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKT 686 (785)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTC--SSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHH--cCCCCCHHHHhcccccHHHHHHHHHHHHHhcccch
Confidence 344444444443 22379999988764333332 22222222 122 345544433 4677788888899999998
Q ss_pred hcccccccCCCccchhhhCCC-cHHHHh-------hHHHHHHHHHHHHHHHHHHhhc
Q 024239 201 VTKSSTVLGKTAGKDLVSDKA-TYPKLM-------GIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 201 ~~~~~~~~gK~~~~Dl~~gk~-T~p~i~-------~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
+..+. .+|.. +....| ..|.|.+.+++.++.+.+.|++
T Consensus 687 ~k~E~-----------~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~ 732 (785)
T 3s9v_A 687 YQAER-----------GQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNR 732 (785)
T ss_dssp HHHHH-----------HHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHH-----------hcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 85332 23333 333333 3567777788888888887764
No 103
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=50.26 E-value=1e+02 Score=30.31 Aligned_cols=109 Identities=14% Similarity=0.067 Sum_probs=63.3
Q ss_pred hHHHHHHHhhcC--CCCCCHHHHHHHHhhchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q 024239 128 LLKGQVTDLDSE--GKDVSLSELEYIHVHKTAKL-LEASVVCGVIIGG-GNVIEIERV---RNYARCIGLLFQVVDDILD 200 (270)
Q Consensus 128 ~~~GQ~~d~~~~--~~~~~~~~~~~i~~~KTg~l-f~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~afQi~DD~ld 200 (270)
++.+-..+..|. +..+|.++|.....--+|.. +..++..+ ++. .+++..+-. .++-+..+...-+.||+..
T Consensus 578 l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S 655 (764)
T 3p5p_A 578 YFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKT 655 (764)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccc
Confidence 344444444442 22379999988764334432 22222222 222 344444443 4678888899999999998
Q ss_pred hcccccccCCCccchhhhCCC-cHHHHh-------hHHHHHHHHHHHHHHHHHHhhc
Q 024239 201 VTKSSTVLGKTAGKDLVSDKA-TYPKLM-------GIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 201 ~~~~~~~~gK~~~~Dl~~gk~-T~p~i~-------~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
+..+. .+|.. +....| ..|.|.+.+++.++.+.+.|++
T Consensus 656 ~k~E~-----------~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~ 701 (764)
T 3p5p_A 656 YQAEK-----------ARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASF 701 (764)
T ss_dssp HHHHH-----------TTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH-----------hcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 85332 22332 333333 3567788888888888887764
No 104
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=37.31 E-value=59 Score=24.82 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHh
Q 024239 85 AILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSAL 123 (270)
Q Consensus 85 Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (270)
-||+||++-+.-+.+|+.... ...+..+++++
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~-------~~~i~~lS~aI 103 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFY-------QHDFLVLTDCV 103 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBC-------HHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHcChhh-------HHHHHHHHHHH
Confidence 469999999999999997432 23445555554
No 105
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=36.59 E-value=99 Score=27.43 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 024239 181 VRNYARCIGLLFQVVDDILD 200 (270)
Q Consensus 181 l~~~g~~lG~afQi~DD~ld 200 (270)
+...-+-+=.++-|.||+.|
T Consensus 109 ~A~avEliH~asLIHDDImD 128 (374)
T 2qis_A 109 VGWCVELLQAFFLVADDIMD 128 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccccC
Confidence 33455566677889999965
No 106
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=36.57 E-value=1.2e+02 Score=26.67 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhH--HHHHHHHHHHHHHHHHHhhcc
Q 024239 183 NYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGI--ENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 183 ~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l--~~a~~~~~~~~~~a~~~L~~l 250 (270)
..-+-+=.++=|.||+.| .+|++.|++|+-..++. ..|.-...-++..|.+.+..+
T Consensus 85 ~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~ 142 (362)
T 1yhl_A 85 WMIEFLQAHYLVEDDIMD------------GSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHY 142 (362)
T ss_dssp HHHHHHHHHHHHHHHHHH------------TCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccC------------CCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHh
Confidence 345556667789999977 34567777777766665 344444555566677766654
No 107
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=33.61 E-value=1.5e+02 Score=26.17 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024239 180 RVRNYARCIGLLFQVVDDILD 200 (270)
Q Consensus 180 ~l~~~g~~lG~afQi~DD~ld 200 (270)
.+...-+-+=.++=|.||+.|
T Consensus 101 ~~A~aiEliH~asLiHDDImD 121 (367)
T 1uby_A 101 AVGWCIELFQAASLVADDIMD 121 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccC
Confidence 344555566677889999976
No 108
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=22.72 E-value=3.4e+02 Score=24.04 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=29.4
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHH
Q 024239 175 VIEIERVRNYA---RCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENA 232 (270)
Q Consensus 175 ~~~~~~l~~~g---~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a 232 (270)
.+..+.+...+ +-+=.++=|.||+.| .+|+|.|++|+-..++...|
T Consensus 101 ~~~~~~~~~~A~aiEliH~asLiHDDImD------------~s~~RRG~pt~h~~~g~~~A 149 (395)
T 3mav_A 101 SSEWEKAACLAWCIEILQAAFLVADDIMD------------KGEMRRNKYCWYLLKDVETK 149 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECGGGSTTTHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHhc------------CCCCCCCchhhhhccchHHH
Confidence 44444443333 445566778999976 46778888888777665444
Done!