RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024239
(270 letters)
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 184 bits (468), Expect = 6e-58
Identities = 117/271 (43%), Positives = 148/271 (54%), Gaps = 4/271 (1%)
Query: 2 QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDL 61
+ E M+Y L GGKR+RP L A+ + G + + A A+E H SLIHDDL
Sbjct: 27 FQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDL 86
Query: 62 PALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVA-AKTVGVSTDRVVRAITELG 120
PA+D+DDLRRG PT H FGE AILAGDAL LAF ++ A VS + I+EL
Sbjct: 87 PAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELA 146
Query: 121 SALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTA-KLLEASVVCGVIIGGGNVIEIE 179
SA G G+ GQ DLD+EGK V L LE IH HKT + A + + G +
Sbjct: 147 SASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALP 206
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
+ YA IGL FQV DDILDV + LGK G D K+TYP L+G+E A+K A +L
Sbjct: 207 VLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDL 266
Query: 240 FSQATKELAYF--EVSKAAPLYHLAKYIVSR 268
A + L + + L LA YI+ R
Sbjct: 267 IDDARQSLKQLAEQSLDTSALEALADYIIQR 297
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 172 bits (437), Expect = 3e-53
Identities = 110/266 (41%), Positives = 153/266 (57%), Gaps = 2/266 (0%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
++ E+M YSL AGGKRIRPVL + + + + + L M A ALEM HT SLIHDDLPA
Sbjct: 26 DTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPA 85
Query: 64 LDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSAL 123
+DNDD RRGK TNHKV+GE TAILAGDALL AFE +++ ++ + ++ + L A
Sbjct: 86 MDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR-LTDEVKIKVLQRLSIAS 144
Query: 124 GAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRN 183
G G++ GQ+ D+ SEG+ + L LE IH KT LL +V+ I + E + +
Sbjct: 145 GHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLES 204
Query: 184 YARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQA 243
Y+ +G++FQ+ DD+LD LGK G DL ++K+TY L+G + A+ A
Sbjct: 205 YSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAA 264
Query: 244 TKELAYF-EVSKAAPLYHLAKYIVSR 268
EL E L + SR
Sbjct: 265 VDELTQIDEQFNTKHLLEIVDLFYSR 290
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 104 bits (259), Expect = 5e-27
Identities = 55/253 (21%), Positives = 98/253 (38%), Gaps = 16/253 (6%)
Query: 2 QHPEKI-HEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
+ ++I E +Y L GK++R L A + E + + EM H SL+ DD
Sbjct: 1 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDD 60
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELG 120
+ DN LRRG P H ++G P+ I + + + L E V + R + EL
Sbjct: 61 IE--DNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELH 118
Query: 121 SALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIER 180
G + + T E EY + + G++ E
Sbjct: 119 QGQGLDIYWRDNYTCPTEE---------EYKAMVLQKTGGLFGLAVGLMQ--LFSDYKED 167
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE--E 238
++ +GL FQ+ DD ++ K+ +DL K ++P + I + + +
Sbjct: 168 LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQN 227
Query: 239 LFSQATKELAYFE 251
+ Q T+ + +
Sbjct: 228 ILRQRTENIDIKK 240
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 101 bits (252), Expect = 3e-26
Identities = 58/260 (22%), Positives = 105/260 (40%), Gaps = 17/260 (6%)
Query: 7 IHEAMRYSLLAGGKRIRPVLCIASCELVGGDES-LVMPMACALEMTHTMSLIHDDLPALD 65
E + L GK +R L I S + G + + ALE+ H SL+HDD+ D
Sbjct: 20 FPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDVI--D 77
Query: 66 NDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGA 125
RRGK T + ++G+ A+ AGD +L AF V + I ++
Sbjct: 78 GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS----- 132
Query: 126 EGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYA 185
+ ++ + S K ++ E I K+ L ++ ++ G E + N
Sbjct: 133 ----EAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGEL---GEDLYNLG 185
Query: 186 RCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245
IG ++Q+ DDI+D + DL + A++P + +E + + ++
Sbjct: 186 VTIGTIYQMFDDIMDFAGMEKIGKDG-FLDLKNGVASFPLVTAMEKFPEARQMFENRDWS 244
Query: 246 ELAYFEVSKAAPLYHLAKYI 265
L F + + L + +
Sbjct: 245 GLMSF-MREKGILKECEETL 263
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 97.4 bits (241), Expect = 4e-24
Identities = 40/259 (15%), Positives = 84/259 (32%), Gaps = 20/259 (7%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDES-------LVMPMACALEMTHTMSL 56
++ E ++Y+ GGK R + +A+ + G + + +E+ L
Sbjct: 37 VARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAFFL 95
Query: 57 IHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHV-----AAKTVGVSTDR 111
+ DD+ D RRG+ +K G + LL + V + V
Sbjct: 96 VADDIM--DQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLE 153
Query: 112 VVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIG 171
+ L+ V+ +D + + ++G
Sbjct: 154 LFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVG 213
Query: 172 GGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIEN 231
+ E E + +G FQ+ DD LD + GK +K ++ + ++
Sbjct: 214 IDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDI-QDNKCSWLVVQCLQR 272
Query: 232 A----KKFAEELFSQATKE 246
++ E+ + + E
Sbjct: 273 VTPEQRQLLEDNYGRKEPE 291
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 28.5 bits (63), Expect = 0.73
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 12 RYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRR 71
R+ +L I+P++CI +L+ D+ + E + + D D L
Sbjct: 32 RFLVLVEANDIQPIICITKMDLI-EDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLAD 90
Query: 72 GKPTNHKVFGEPTAILAGDA 91
F + T + AG +
Sbjct: 91 ----IIPHFQDKTTVFAGQS 106
>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
{Bacillus anthracis [TaxId: 1392]}
Length = 509
Score = 26.8 bits (59), Expect = 3.2
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 90 DALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQV----TDLDSEGKDVS 144
+ L+ E T G ++ + + L A+ G G V T+ D+E
Sbjct: 241 NLLIKYGIERKPDSTKGTLSNWQKQMLDRLNEAVKYTGYTGGDVVNHGTEQDNEEFPEK 299
>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {Human coronavirus 229E
[TaxId: 11137]}
Length = 300
Score = 26.3 bits (58), Expect = 4.6
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 95 LAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSE 139
AF +AAKT GV +R++ AI L + G + +L G + L+ E
Sbjct: 245 DAFSILAAKT-GVCVERLLHAIQVLNNGFGGKQIL-GY-SSLNDE 286
>d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase
(hydroxymethylbilane synthase), C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 88
Score = 24.7 bits (54), Expect = 4.7
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 187 CIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKE 246
IG +++D + + ++G G ++ + + AEEL + +E
Sbjct: 26 PIGSYAELIDGEIWLR---GLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGARE 82
Query: 247 L 247
+
Sbjct: 83 I 83
>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {Transmissible
gastroenteritis virus [TaxId: 11149]}
Length = 299
Score = 25.5 bits (56), Expect = 6.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 95 LAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSE 139
AF +AAKT G S ++++ +I L G +L L E
Sbjct: 245 DAFSMLAAKT-GQSVEKLLDSIVRLNKGFGGRTIL-SY-GSLCDE 286
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.379
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 949,426
Number of extensions: 43121
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 11
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.7 bits)