Citrus Sinensis ID: 024239

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN
ccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHccccccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccc
*QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQ*
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MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic Heterodimeric geranyl(geranyl)-diphosphate (GPP) synthase large subunit. In vitro, the large subunit catalyzes mainly the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate while the small subunit alone is inactive. Upon association of the two subunits, the product profile changes and the production of gerany-diphosphate is strongly increased.probableP34802
Farnesyl diphosphate synthase probableO66126
Farnesyl diphosphate synthase probableP54383

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
2.-.-.-Transferases.probable
2.5.-.-Transferring alkyl or aryl groups, other than methyl groups.probable
2.5.1.-5,10-methenyltetrahydromethanopterin hydrogenase.probable
2.5.1.10(2E,6E)-farnesyl diphosphate synthase.probable
2.5.1.1Transferred entry: 2.5.1.18.probable
2.5.1.29Geranylgeranyl diphosphate synthase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2J1P, chain A
Confidence level:very confident
Coverage over the Query: 3-203,220-270
View the alignment between query and template
View the model in PyMOL