BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024240
         (270 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
           Dictyostelium Discoideum
          Length = 521

 Score = 33.9 bits (76), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 174 VIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHR 233
           + E + + G+    V T V+ N V+  +    +K SG  VPR      GP  D + +R +
Sbjct: 426 IFEGIKVTGI---AVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPF---GPVFDGIEQRDK 479

Query: 234 LPNESLRKEAMKTAKDQSKK 253
           + NE LRK   K  +D + K
Sbjct: 480 VRNELLRKVDRKPYEDDNTK 499


>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
 pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
          Length = 467

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 188 VCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMK 245
            C+   S R+F+ + A+ L    T++     VE G  +  +++ H+ PN+   KEA K
Sbjct: 79  ACSQAVSERLFY-YIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASK 135


>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
           (Pdp1)
 pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
           (Pdp1)
          Length = 467

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 188 VCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMK 245
            C+   S R+F+ + A+ L    T++     VE G  +  +++ H+ PN+   KEA K
Sbjct: 79  ACSQAVSERLFY-YIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASK 135


>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
          Length = 147

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 40  NTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEF--FSLKTDCSIFIYGSTSK 97
           + L D  TE+ +  K  A       + +R F  GG  S     F+ K +C + + G+   
Sbjct: 62  DALKDYATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGT 121

Query: 98  KRPDNLVIG 106
               +L++G
Sbjct: 122 NGDKSLLLG 130


>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
           Domain
          Length = 168

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 153 FESVEELKHLKEVLVDLLRGEVIENLNLAGLDH------AYVCTAVSSNRVFFTHCALRL 206
           + S + L+ + +   DLL  + IE ++    D       +Y+C   ++ R +  HC L L
Sbjct: 83  WVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRR-WICHCFLAL 141

Query: 207 KKSGTIVPRMELVEVGPCMDFVVRRHR 233
           K SG  +          C++   RR +
Sbjct: 142 KDSGERLSHAVGCAFAACLERKQRREK 168


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,688,237
Number of Sequences: 62578
Number of extensions: 316667
Number of successful extensions: 802
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 7
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)