Query 024240
Match_columns 270
No_of_seqs 115 out of 431
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 99.7 1.1E-15 3.7E-20 135.0 13.5 170 27-228 33-205 (217)
2 1w94_A MIL, probable BRIX-doma 97.5 0.0019 6.6E-08 53.8 12.5 123 30-190 2-124 (156)
3 2z08_A Universal stress protei 19.4 29 0.00099 25.8 0.6 23 76-98 89-111 (137)
4 1mjh_A Protein (ATP-binding do 17.3 36 0.0012 26.0 0.7 23 76-98 110-132 (162)
5 3hgm_A Universal stress protei 17.0 39 0.0013 25.1 0.8 24 76-99 100-123 (147)
6 3tnj_A Universal stress protei 16.9 42 0.0014 25.2 1.0 23 76-98 99-121 (150)
7 4ffe_X CPXV018 protein; viral 16.3 2.6E+02 0.0089 21.9 5.4 65 138-202 24-98 (151)
8 2gm3_A Unknown protein; AT3G01 16.3 53 0.0018 25.5 1.5 22 76-97 114-135 (175)
9 3dlo_A Universal stress protei 15.4 56 0.0019 25.2 1.4 30 76-105 107-136 (155)
10 2dum_A Hypothetical protein PH 15.3 43 0.0015 25.8 0.7 22 76-97 107-128 (170)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=99.65 E-value=1.1e-15 Score=135.02 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=128.9
Q ss_pred CcEEEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCCcEEEEeeeCCCCCCceEEE
Q 024240 27 GKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIG 106 (270)
Q Consensus 27 ~K~~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~f~s~~KKrp~~L~ig 106 (270)
..++||..+++.|+.++++++||..+. |++.++++.+..+ ..|.+.|..++|+-+++...+++.|++||+.
T Consensus 33 ~pKvLITTSr~pS~r~r~fakeL~~~l-Pns~~i~Rgk~sL--------keL~e~a~~~~~tdlivV~e~rg~p~~L~~~ 103 (217)
T 2cxh_A 33 GYRILVTTSRRPSPRIRSFVKDLSATI-PGAFRFTRGHYSM--------EELAREAIIRGADRIVVVGERRGNPGIIRVY 103 (217)
T ss_dssp CCEEEEEESSSCCHHHHHHHHHHHTTS-TTEEECCCTTCCH--------HHHHHHHHHTTEEEEEEEEEETTEEEEEEEE
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHC-CCCEEeecCCcCH--------HHHHHHHHhCCCCEEEEEEecCCCCcEEEEE
Confidence 567899999999999999999999998 9998887644323 7888899999997665555556679999999
Q ss_pred EccCCceee-eEEEEeeceeecccccCCC-CCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCC-C
Q 024240 107 RTYDHHIYD-LVEVGVENFKPLNSFIYDK-KLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG-L 183 (270)
Q Consensus 107 R~~~g~~LD-m~ef~V~n~~~~~~~~~~~-~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~-i 183 (270)
..|+|.... ++.|.|.|+++++|++..+ | ..+++|.|+ ++ |++. +..++++||+++|+.|..+.-+..| .
T Consensus 104 hlP~G~~~P~Ta~F~I~nv~l~~ei~~~g~~---~~~~rP~L~-~n--F~t~-~g~~i~~~f~~lFp~P~~~~~~~~~~~ 176 (217)
T 2cxh_A 104 AVEGPERPDNIVSFIVKGVSLSRERRWGLPS---LRGGEVLVA-RP--LDSG-VAVEFADAFVIAFHARLKPPEAAGYVE 176 (217)
T ss_dssp ECCSSSCCEEEEEEEEEEEECHHHHTCCCCC---CCSCCEEEE-EE--SSSS-THHHHHHHHHHHHCCBSSCCSSSCEEE
T ss_pred ECCCCCCCCcEEEEEEeeEEehhhhccCCCc---cCCCCceEE-ee--ecCc-hHHHHHHHHHHHcCCCCCChhhhcccc
Confidence 999992221 6899999999999999764 5 789999999 55 9886 7899999999999987763222221 2
Q ss_pred cEEEEEEEecCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeEE
Q 024240 184 DHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFV 228 (270)
Q Consensus 184 d~vi~ft~~d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl~ 228 (270)
|-++.| ++....+.-| + ....+||.+-..
T Consensus 177 d~~~~i---~~~~~~v~f~-----~--------~~~~~Gp~i~i~ 205 (217)
T 2cxh_A 177 AVIESL---DARTVAVTFR-----Y--------GGAPVGPMLRLG 205 (217)
T ss_dssp EEEEEE---ETTEEEEEEE-----C--------SSSEEEEEEEEE
T ss_pred cEEEEE---cCCcEEEEEe-----c--------CCCccCcEEEEc
Confidence 666666 3442333333 1 346789987554
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=97.46 E-value=0.0019 Score=53.77 Aligned_cols=123 Identities=14% Similarity=0.001 Sum_probs=84.3
Q ss_pred EEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCCcEEEEeeeCCCCCCceEEEEcc
Q 024240 30 TLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTY 109 (270)
Q Consensus 30 ~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~f~s~~KKrp~~L~igR~~ 109 (270)
++|=-|++.|+.+++..++|.... ++..+++.+ .+|+++++.....++++.++++ .|+.|.+.-.|
T Consensus 2 ilITTSr~Ps~~l~~fakeLa~~l--n~~~v~Rgk-----------~sl~~L~~~~~~~~iVV~e~rg-~P~~l~i~hlp 67 (156)
T 1w94_A 2 MLLTTSRKPSQRTRSFSQRLSRIM--GWRYINRGK-----------MSLRDVLIEARGPVAVVSERHG-NPARITFLDER 67 (156)
T ss_dssp CEEEECSSCCHHHHHHHHHHHHHH--TCEECCCTT-----------CCHHHHHHHHSSCEEEEEEETT-EEEEEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh--CCEEEeeCC-----------cCHHHHHHhcCCCEEEEEcCCC-CCCeEEEEeCC
Confidence 467778999999999999999886 777776654 4667776655556888888754 59999999999
Q ss_pred CCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCCCcEEEEE
Q 024240 110 DHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVC 189 (270)
Q Consensus 110 ~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~id~vi~f 189 (270)
+||+ +.|.+ |...-+|....+ ... +++.++ .+.+ +.|.++|+-+.+.. . -+.|+.|
T Consensus 68 ~gpt---~~f~~-nv~l~~~~~~~~-------~~~-v~~~~~----~~~~----~~l~~~~~~~~~~~---~-~~~~~~i 123 (156)
T 1w94_A 68 GGER---GYILF-NPSFEMKKPELA-------DKA-VRVSSC----PPGS----EGLCNLMGLEVDES---S-SRDAWSI 123 (156)
T ss_dssp SCEE---EEEEE-EEEECSSCCCCS-------SCC-CEESCC----CTTC----HHHHHHHTCEECCS---C-CTTEEEE
T ss_pred CCCE---EEEEE-ceEEcccCcccC-------Cce-EEEecC----ChhH----HHHHHHHCCCccCC---C-CceEEEE
Confidence 9998 57777 877777765322 111 444442 2334 56667776544321 1 1567777
Q ss_pred E
Q 024240 190 T 190 (270)
Q Consensus 190 t 190 (270)
.
T Consensus 124 ~ 124 (156)
T 1w94_A 124 R 124 (156)
T ss_dssp E
T ss_pred E
Confidence 5
No 3
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=19.36 E-value=29 Score=25.82 Aligned_cols=23 Identities=4% Similarity=0.115 Sum_probs=20.0
Q ss_pred chhhhhhccCCCcEEEEeeeCCC
Q 024240 76 TSLEFFSLKTDCSIFIYGSTSKK 98 (270)
Q Consensus 76 ~~le~la~k~dcslf~f~s~~KK 98 (270)
..|.++|+..+|+++++|++.+.
T Consensus 89 ~~I~~~a~~~~~dliV~G~~~~~ 111 (137)
T 2z08_A 89 EAILQAARAEKADLIVMGTRGLG 111 (137)
T ss_dssp HHHHHHHHHTTCSEEEEESSCTT
T ss_pred HHHHHHHHHcCCCEEEECCCCCc
Confidence 68888999999999999998544
No 4
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=17.26 E-value=36 Score=26.01 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.9
Q ss_pred chhhhhhccCCCcEEEEeeeCCC
Q 024240 76 TSLEFFSLKTDCSIFIYGSTSKK 98 (270)
Q Consensus 76 ~~le~la~k~dcslf~f~s~~KK 98 (270)
..|..+|+..+|+++++|++.+.
T Consensus 110 ~~I~~~a~~~~~dlIV~G~~g~~ 132 (162)
T 1mjh_A 110 EEIVKIAEDEGVDIIIMGSHGKT 132 (162)
T ss_dssp HHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHcCCCEEEEcCCCCC
Confidence 67888999999999999998543
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=16.98 E-value=39 Score=25.13 Aligned_cols=24 Identities=17% Similarity=0.499 Sum_probs=20.5
Q ss_pred chhhhhhccCCCcEEEEeeeCCCC
Q 024240 76 TSLEFFSLKTDCSIFIYGSTSKKR 99 (270)
Q Consensus 76 ~~le~la~k~dcslf~f~s~~KKr 99 (270)
..|-..|+.++|+++++|++.+..
T Consensus 100 ~~I~~~a~~~~~dliV~G~~~~~~ 123 (147)
T 3hgm_A 100 RTIVRFARKRECDLVVIGAQGTNG 123 (147)
T ss_dssp HHHHHHHHHTTCSEEEECSSCTTC
T ss_pred HHHHHHHHHhCCCEEEEeCCCCcc
Confidence 678889999999999999986443
No 6
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=16.93 E-value=42 Score=25.17 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=18.5
Q ss_pred chhhhhhccCCCcEEEEeeeCCC
Q 024240 76 TSLEFFSLKTDCSIFIYGSTSKK 98 (270)
Q Consensus 76 ~~le~la~k~dcslf~f~s~~KK 98 (270)
..|..+|+.++|+++++|++.+.
T Consensus 99 ~~I~~~a~~~~~dliV~G~~~~~ 121 (150)
T 3tnj_A 99 EEIIRIAEQENVDLIVVGSHGRH 121 (150)
T ss_dssp HHHHHHHHHTTCSEEEEEEC---
T ss_pred HHHHHHHHHcCCCEEEEecCCCC
Confidence 68888999999999999997543
No 7
>4ffe_X CPXV018 protein; viral immune evasion proteins, structural genomics, NKG2D DE ligand, niaid, national institute of allergy and infectious diseases; 2.25A {Cowpox virus}
Probab=16.32 E-value=2.6e+02 Score=21.85 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=41.8
Q ss_pred CCCCCccEEEEeCCCC--------CChHHHHHHHHHHHhhCCCCCCCccc--cCCCcEEEEEEEecCCeEEEEEE
Q 024240 138 PRVGSKPFICFVGEGF--------ESVEELKHLKEVLVDLLRGEVIENLN--LAGLDHAYVCTAVSSNRVFFTHC 202 (270)
Q Consensus 138 ~~~gskPllvF~g~~F--------~~~~~l~~lK~ll~d~F~~~~~~~i~--l~~id~vi~ft~~d~~~I~~R~Y 202 (270)
+....-|++.|+|-.- +..--|-..||+|..||+--.--+++ -+.+.+-.++.|.|++.-.=.+|
T Consensus 24 i~ld~~~i~tfdgkdi~psi~fmig~~~fl~~yknif~eff~lfrrv~~ss~ye~l~y~y~cdyt~n~~t~~q~y 98 (151)
T 4ffe_X 24 VYLDDSQIITFDGKDIRPTIPFMIGDEIFLPFYKNVFSEFFSLFRRVPTSTPYEDLTYFYECDYTDNKSTFDQFY 98 (151)
T ss_dssp EEETTEEEEEECSSCEEECSGGGTTCSSHHHHHHHHHHHHHHTCCCCCCSSSEEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEecCCceEEecCcccccccceeeCCeeehHHHHHHHHHHHHHHhhCCCCCcccceeEEEeccccCCccchhhee
Confidence 3667789999998422 11235677889988888654333333 34688888999999873333344
No 8
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=16.26 E-value=53 Score=25.48 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=19.3
Q ss_pred chhhhhhccCCCcEEEEeeeCC
Q 024240 76 TSLEFFSLKTDCSIFIYGSTSK 97 (270)
Q Consensus 76 ~~le~la~k~dcslf~f~s~~K 97 (270)
..|..+|+..+|+++++|++.+
T Consensus 114 ~~I~~~a~~~~~DLIVmG~~g~ 135 (175)
T 2gm3_A 114 DVICQEVKRVRPDFLVVGSRGL 135 (175)
T ss_dssp HHHHHHHHHHCCSEEEEEECCC
T ss_pred HHHHHHHHHhCCCEEEEeCCCC
Confidence 6788889999999999999853
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=15.37 E-value=56 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=23.0
Q ss_pred chhhhhhccCCCcEEEEeeeCCCCCCceEE
Q 024240 76 TSLEFFSLKTDCSIFIYGSTSKKRPDNLVI 105 (270)
Q Consensus 76 ~~le~la~k~dcslf~f~s~~KKrp~~L~i 105 (270)
..|-.+|+..+++++++|++.+..-..+++
T Consensus 107 ~~I~~~a~~~~~DLIV~G~~g~~~~~~~~l 136 (155)
T 3dlo_A 107 DDIVDFADEVDAIAIVIGIRKRSPTGKLIF 136 (155)
T ss_dssp HHHHHHHHHTTCSEEEEECCEECTTSCEEC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCEEe
Confidence 688889999999999999986544333443
No 10
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=15.32 E-value=43 Score=25.84 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.3
Q ss_pred chhhhhhccCCCcEEEEeeeCC
Q 024240 76 TSLEFFSLKTDCSIFIYGSTSK 97 (270)
Q Consensus 76 ~~le~la~k~dcslf~f~s~~K 97 (270)
..|.++|+.++|+++++|++.+
T Consensus 107 ~~I~~~a~~~~~DlIV~G~~g~ 128 (170)
T 2dum_A 107 DEIVKVAEEENVSLIILPSRGK 128 (170)
T ss_dssp HHHHHHHHHTTCSEEEEESCCC
T ss_pred HHHHHHHHHcCCCEEEECCCCC
Confidence 6788899999999999999743
Done!