Query 024241
Match_columns 270
No_of_seqs 183 out of 426
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nee_A EIF-2-beta, probable tr 100.0 4.7E-57 1.6E-61 379.1 1.6 135 115-255 4-138 (138)
2 2d74_B Translation initiation 100.0 3.6E-56 1.2E-60 377.5 5.9 138 115-258 5-143 (148)
3 3cw2_K Translation initiation 100.0 7.7E-57 2.6E-61 378.2 -11.6 136 115-255 4-139 (139)
4 2e9h_A EIF-5, eukaryotic trans 100.0 1.2E-48 4.2E-53 334.1 10.1 126 126-255 10-141 (157)
5 2g2k_A EIF-5, eukaryotic trans 100.0 3.9E-47 1.3E-51 328.3 10.6 120 136-255 9-134 (170)
6 1k8b_A EIF-2-beta, probable tr 99.9 5.1E-23 1.7E-27 146.7 6.1 52 149-202 1-52 (52)
7 1k81_A EIF-2-beta, probable tr 99.6 9.8E-16 3.4E-20 101.4 2.8 36 220-255 1-36 (36)
8 1pft_A TFIIB, PFTFIIBN; N-term 90.4 0.16 5.3E-06 34.5 2.4 37 220-258 6-42 (50)
9 1tfi_A Transcriptional elongat 89.1 0.33 1.1E-05 33.5 3.3 34 219-252 9-49 (50)
10 1qyp_A RNA polymerase II; tran 89.0 0.38 1.3E-05 33.5 3.7 34 219-252 15-55 (57)
11 2fiy_A Protein FDHE homolog; F 88.8 0.23 7.9E-06 46.0 3.1 40 217-256 180-224 (309)
12 2pk7_A Uncharacterized protein 86.7 0.2 7E-06 36.9 1.1 37 214-253 3-39 (69)
13 2ogh_A Eukaryotic translation 86.0 1.8 6.1E-05 34.2 6.4 57 155-216 37-97 (108)
14 1dl6_A Transcription factor II 82.6 0.44 1.5E-05 33.7 1.3 35 220-256 12-46 (58)
15 2js4_A UPF0434 protein BB2007; 81.3 0.33 1.1E-05 35.8 0.2 36 215-253 4-39 (70)
16 1wii_A Hypothetical UPF0222 pr 81.2 1.4 4.6E-05 33.8 3.6 37 216-252 20-59 (85)
17 2hf1_A Tetraacyldisaccharide-1 80.9 0.34 1.2E-05 35.6 0.2 36 215-253 4-39 (68)
18 4bbr_M Transcription initiatio 80.4 0.64 2.2E-05 43.3 1.9 30 220-249 22-51 (345)
19 1pqv_S STP-alpha, transcriptio 80.3 1 3.5E-05 41.5 3.2 33 219-251 268-307 (309)
20 4h62_V Mediator of RNA polymer 78.8 0.55 1.9E-05 29.2 0.6 21 201-221 7-27 (31)
21 2jr6_A UPF0434 protein NMA0874 78.6 0.34 1.2E-05 35.6 -0.5 36 215-253 4-39 (68)
22 2jny_A Uncharacterized BCR; st 76.6 0.57 2E-05 34.3 0.3 38 213-253 4-41 (67)
23 3po3_S Transcription elongatio 74.9 0.77 2.6E-05 39.3 0.7 33 219-251 137-176 (178)
24 3k1f_M Transcription initiatio 74.8 1.3 4.3E-05 38.8 2.0 37 219-255 21-57 (197)
25 3h0g_I DNA-directed RNA polyme 73.4 1.8 6.1E-05 34.2 2.4 32 220-251 73-111 (113)
26 1twf_I B12.6, DNA-directed RNA 72.9 2.6 9E-05 33.6 3.3 35 220-254 73-114 (122)
27 1gh9_A 8.3 kDa protein (gene M 72.3 2.4 8.2E-05 31.4 2.7 32 220-256 5-36 (71)
28 2vut_I AREA, nitrogen regulato 71.8 0.48 1.7E-05 31.9 -1.1 27 221-249 3-31 (43)
29 2lo3_A SAGA-associated factor 71.2 1.2 4E-05 30.3 0.7 30 227-256 1-33 (44)
30 2kpi_A Uncharacterized protein 70.2 1.3 4.5E-05 31.2 0.8 35 214-253 5-41 (56)
31 2xzm_F EIF1; ribosome, transla 69.9 9.3 0.00032 29.8 5.8 56 154-214 29-88 (101)
32 3j20_Y 30S ribosomal protein S 69.5 2.7 9.4E-05 28.9 2.3 29 218-249 18-46 (50)
33 1gnf_A Transcription factor GA 68.6 0.53 1.8E-05 32.2 -1.4 30 220-249 5-34 (46)
34 1nui_A DNA primase/helicase; z 66.6 3.5 0.00012 35.9 3.0 30 219-251 14-44 (255)
35 2if1_A EIF1, SUI1; translation 65.6 5.8 0.0002 32.3 3.9 59 152-215 51-114 (126)
36 3k7a_M Transcription initiatio 63.3 1.5 5.1E-05 40.5 -0.0 37 219-255 21-57 (345)
37 3a43_A HYPD, hydrogenase nicke 62.6 4.7 0.00016 32.9 2.9 24 176-200 42-65 (139)
38 1qxf_A GR2, 30S ribosomal prot 61.8 2.8 9.4E-05 30.9 1.2 31 218-250 6-36 (66)
39 2kae_A GATA-type transcription 61.4 0.93 3.2E-05 33.7 -1.4 28 220-248 9-38 (71)
40 1x0t_A Ribonuclease P protein 61.0 6.7 0.00023 31.3 3.5 37 220-256 66-110 (120)
41 3dfx_A Trans-acting T-cell-spe 59.7 0.73 2.5E-05 33.5 -2.2 40 220-259 8-54 (63)
42 4gat_A Nitrogen regulatory pro 58.8 1.2 4E-05 32.6 -1.3 27 220-248 10-38 (66)
43 2k3r_A Ribonuclease P protein 58.5 6.7 0.00023 31.5 3.1 37 220-256 61-105 (123)
44 1d0q_A DNA primase; zinc-bindi 57.9 6.5 0.00022 30.1 2.8 31 220-252 38-70 (103)
45 3h0g_I DNA-directed RNA polyme 57.8 3.9 0.00013 32.2 1.6 35 220-254 5-40 (113)
46 2e2z_A TIM15; protein import, 57.7 6 0.0002 31.2 2.5 35 219-253 13-51 (100)
47 2qkd_A Zinc finger protein ZPR 57.3 7.4 0.00025 37.4 3.7 33 219-251 220-260 (404)
48 1twf_I B12.6, DNA-directed RNA 55.7 6.4 0.00022 31.3 2.5 34 220-253 5-39 (122)
49 3j20_W 30S ribosomal protein S 55.2 4.1 0.00014 29.7 1.2 29 219-249 15-43 (63)
50 2au3_A DNA primase; zinc ribbo 55.2 5.2 0.00018 37.6 2.2 43 208-252 16-67 (407)
51 2jrp_A Putative cytoplasmic pr 52.4 7.8 0.00027 29.4 2.3 25 220-249 3-27 (81)
52 2apo_B Ribosome biogenesis pro 51.8 6.9 0.00024 28.1 1.9 26 219-253 6-31 (60)
53 3qt1_I DNA-directed RNA polyme 51.6 3.1 0.00011 34.0 0.0 32 220-251 93-131 (133)
54 1x3z_A Peptide: N-glycanase; h 51.0 10 0.00034 35.7 3.4 46 206-251 100-166 (335)
55 3j21_g 50S ribosomal protein L 50.9 4.4 0.00015 28.2 0.7 35 213-255 8-42 (51)
56 2xzm_6 RPS27E; ribosome, trans 50.1 4.8 0.00016 30.7 0.8 29 219-249 32-60 (81)
57 1vq8_Z 50S ribosomal protein L 49.5 7.2 0.00024 29.5 1.7 46 202-252 11-57 (83)
58 3u5c_b RP61, YS20, 40S ribosom 48.6 6.5 0.00022 30.0 1.4 30 219-250 34-63 (82)
59 3o9x_A Uncharacterized HTH-typ 48.6 13 0.00044 28.7 3.2 33 221-253 4-49 (133)
60 1d1r_A Hypothetical 11.4 KD pr 47.1 8.1 0.00028 31.0 1.8 56 155-215 45-100 (116)
61 1vk6_A NADH pyrophosphatase; 1 46.7 6.1 0.00021 35.2 1.1 39 210-251 98-136 (269)
62 3iz6_X 40S ribosomal protein S 44.1 5.6 0.00019 30.6 0.4 30 219-250 36-65 (86)
63 3mhs_E SAGA-associated factor 43.6 6.1 0.00021 31.0 0.6 29 227-255 59-90 (96)
64 3lsg_A Two-component response 42.8 23 0.00078 25.9 3.7 27 162-188 21-47 (103)
65 2kdx_A HYPA, hydrogenase/ureas 42.1 12 0.0004 29.3 2.0 26 173-200 42-68 (119)
66 3mn2_A Probable ARAC family tr 40.9 23 0.00079 26.1 3.5 27 162-188 20-46 (108)
67 2jne_A Hypothetical protein YF 40.6 17 0.00058 28.7 2.7 28 218-250 31-58 (101)
68 3cc2_Z 50S ribosomal protein L 40.4 19 0.00065 29.0 3.0 78 162-250 10-88 (116)
69 3ga8_A HTH-type transcriptiona 40.4 27 0.00091 25.2 3.6 31 221-251 4-47 (78)
70 4a18_A RPL37, ribosomal protei 40.4 4.1 0.00014 31.8 -0.9 26 217-248 14-39 (94)
71 2k5r_A Uncharacterized protein 39.6 4.8 0.00016 31.5 -0.6 39 215-253 4-66 (97)
72 2k9s_A Arabinose operon regula 39.1 27 0.00094 25.7 3.6 27 162-188 22-48 (107)
73 4esj_A Type-2 restriction enzy 39.0 13 0.00043 33.8 1.9 60 201-260 15-76 (257)
74 2aus_D NOP10, ribosome biogene 38.7 13 0.00044 26.7 1.6 24 219-253 5-30 (60)
75 1twf_L ABC10-alpha, DNA-direct 38.7 5 0.00017 29.5 -0.6 31 220-254 29-59 (70)
76 3u50_C Telomerase-associated p 38.4 32 0.0011 29.1 4.2 26 219-249 42-68 (172)
77 3oou_A LIN2118 protein; protei 38.3 28 0.00096 25.7 3.6 28 162-189 23-50 (108)
78 3oio_A Transcriptional regulat 36.4 29 0.001 25.8 3.4 27 162-188 25-51 (113)
79 2j9u_B VPS36, vacuolar protein 36.1 9.1 0.00031 28.8 0.4 32 219-257 17-57 (76)
80 1u8b_A ADA polyprotein; protei 35.8 29 0.001 26.6 3.4 28 161-188 94-121 (133)
81 2con_A RUH-035 protein, NIN on 34.4 14 0.00048 27.8 1.3 6 243-248 33-38 (79)
82 1l8d_A DNA double-strand break 34.0 21 0.00073 27.1 2.3 24 207-230 35-58 (112)
83 4hc9_A Trans-acting T-cell-spe 33.8 5.3 0.00018 31.9 -1.3 29 220-248 6-34 (115)
84 2k2d_A Ring finger and CHY zin 33.6 14 0.00047 27.6 1.1 16 219-234 55-70 (79)
85 4hc9_A Trans-acting T-cell-spe 33.5 5.4 0.00018 31.8 -1.3 30 220-249 60-89 (115)
86 3qt1_I DNA-directed RNA polyme 32.9 12 0.00041 30.5 0.7 35 219-253 24-59 (133)
87 1bl0_A Protein (multiple antib 32.0 36 0.0012 26.0 3.3 47 118-188 9-55 (129)
88 3iz5_m 60S ribosomal protein L 30.8 20 0.00067 27.8 1.5 41 204-249 22-63 (92)
89 2mob_A Protein (methane monoox 29.7 2.3E+02 0.008 23.2 8.6 66 130-202 61-127 (138)
90 3irb_A Uncharacterized protein 29.5 20 0.00068 29.2 1.5 8 242-249 63-70 (145)
91 2k4x_A 30S ribosomal protein S 28.9 45 0.0015 23.1 3.0 30 219-251 18-47 (55)
92 1ltl_A DNA replication initiat 28.9 26 0.00088 31.1 2.3 94 156-250 41-166 (279)
93 2qkd_A Zinc finger protein ZPR 28.9 28 0.00097 33.3 2.7 33 220-252 13-53 (404)
94 2zjr_Z 50S ribosomal protein L 28.8 12 0.00042 26.6 0.1 27 216-250 27-53 (60)
95 2ct7_A Ring finger protein 31; 28.0 13 0.00044 27.5 0.1 31 217-250 23-53 (86)
96 3h0g_L DNA-directed RNA polyme 27.3 18 0.0006 26.2 0.7 33 219-255 21-53 (63)
97 1ryq_A DNA-directed RNA polyme 27.3 23 0.0008 26.0 1.4 35 220-264 12-46 (69)
98 2k16_A Transcription initiatio 26.9 33 0.0011 24.3 2.2 26 218-249 17-42 (75)
99 2kwq_A Protein MCM10 homolog; 26.3 18 0.00061 28.0 0.6 30 217-250 46-75 (92)
100 4e2x_A TCAB9; kijanose, tetron 26.2 36 0.0012 30.9 2.7 32 219-251 12-64 (416)
101 2jox_A Churchill protein; zinc 25.5 55 0.0019 25.9 3.3 35 215-249 22-66 (106)
102 3v2d_5 50S ribosomal protein L 25.4 14 0.00046 26.4 -0.2 25 217-249 28-52 (60)
103 2akl_A PHNA-like protein PA012 24.4 23 0.00077 29.4 0.9 38 212-253 19-57 (138)
104 3iz5_l 60S ribosomal protein L 24.3 24 0.00083 27.5 1.0 26 217-248 14-39 (94)
105 1tc3_C Protein (TC3 transposas 23.6 61 0.0021 19.3 2.7 21 162-182 23-43 (51)
106 2iyb_E Testin, TESS, TES; LIM 22.6 60 0.0021 21.9 2.8 30 220-249 3-41 (65)
107 1xx6_A Thymidine kinase; NESG, 22.6 90 0.0031 26.0 4.4 52 196-247 110-187 (191)
108 3pwf_A Rubrerythrin; non heme 22.6 51 0.0017 27.5 2.8 27 219-251 138-164 (170)
109 2gnr_A Conserved hypothetical 22.5 32 0.0011 28.1 1.5 15 235-249 42-56 (145)
110 2f4m_A Peptide N-glycanase; gl 22.4 44 0.0015 30.7 2.6 52 204-255 60-129 (295)
111 3mkl_A HTH-type transcriptiona 21.2 75 0.0026 23.8 3.3 26 162-188 25-50 (120)
112 1jrm_A MTH0637, conserved hypo 21.2 1.6E+02 0.0054 22.8 5.2 42 174-216 53-99 (104)
113 3p2a_A Thioredoxin 2, putative 20.4 39 0.0013 25.6 1.6 34 219-253 5-38 (148)
114 1nd9_A Translation initiation 20.3 81 0.0028 19.9 2.9 25 162-187 4-28 (49)
115 1d5y_A ROB transcription facto 20.1 59 0.002 27.6 2.8 27 162-188 21-47 (292)
No 1
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=100.00 E-value=4.7e-57 Score=379.13 Aligned_cols=135 Identities=33% Similarity=0.671 Sum_probs=129.3
Q ss_pred CccHHHHHHHHHHHHhhcCCCcccCcceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCC
Q 024241 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ 194 (270)
Q Consensus 115 ~~~YeeLL~R~~~~l~~~np~~~~~~~R~~mP~p~V~~eG~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~~ 194 (270)
.|+|++||+|||++| |+..++.+||+||+|+|.++| +||+|+||.|||++|||+|+||++||++||||+|+|| +
T Consensus 4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~~mp~~~v~~eG-~kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~ 77 (138)
T 1nee_A 4 MDDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-G 77 (138)
T ss_dssp CCSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEET-TEEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-T
T ss_pred ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEEC-CcEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-C
Confidence 689999999999999 554466789999999999999 5799999999999999999999999999999999999 7
Q ss_pred ceEEEEeecChHHHHHHHHHhccceEeeCCCCCCcceEEEcCcEEEeEeccCCCccccccc
Q 024241 195 QRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 195 ~rlii~G~f~~k~ie~~L~~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~i 255 (270)
+||||+|+|++++||++|++||++||+|++|+||||.|++++|+++++|+||||+++|.+|
T Consensus 78 ~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~~i 138 (138)
T 1nee_A 78 GRAILQGKFTHFLINERIEDYVNKFVICHECNRPDTRIIREGRISLLKCEACGAKAPLKNV 138 (138)
T ss_dssp TTEEEESSCSSSHHHHHHHHHHTHHHHHTCCSSCSSCCEEETTTTEEECSTTSCCCCSCCC
T ss_pred CEEEEEeeeCHHHHHHHHHHHHhhEEECCCCCCcCcEEEEcCCeEEEEccCCCCCcccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999886
No 2
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=100.00 E-value=3.6e-56 Score=377.53 Aligned_cols=138 Identities=38% Similarity=0.768 Sum_probs=130.4
Q ss_pred CccHHHHHHHHHHHHhhcCCCcc-cCcceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecC
Q 024241 115 DYEYEELLGRVFNILRENNPELA-GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG 193 (270)
Q Consensus 115 ~~~YeeLL~R~~~~l~~~np~~~-~~~~R~~mP~p~V~~eG~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~ 193 (270)
.|+|++||+|||++| |+.+ ++.+||+||+|+|.++| +||+|+||.|||++|||+|+||++||++||||+|+||
T Consensus 5 ~~~Y~~LL~R~~~~l----p~~~~~~~~RykmP~~~v~~eG-kKTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id- 78 (148)
T 2d74_B 5 YYDYEKLLEKAYQEL----PENVKHHKSRFEVPGALVTIEG-NKTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE- 78 (148)
T ss_dssp TTCHHHHHHTTTSSS----CHHHHSSSCCCCCCCCCEEEET-TEEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-
T ss_pred cccHHHHHHHHHHHC----ccccCCCCCceecCCCeEEEec-CeEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-
Confidence 478999999999999 8876 77789999999999999 7999999999999999999999999999999999999
Q ss_pred CceEEEEeecChHHHHHHHHHhccceEeeCCCCCCcceEEEcCcEEEeEeccCCCcccccccccc
Q 024241 194 QQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAG 258 (270)
Q Consensus 194 ~~rlii~G~f~~k~ie~~L~~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~ik~g 258 (270)
++||||+|+|++++||++|++||++||+|++|+||||.|++++|+++++|+||||+++|.++|..
T Consensus 79 ~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~~k~~ 143 (148)
T 2d74_B 79 GRRVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLLEH 143 (148)
T ss_dssp TTEEEESSCCCHHHHHHHHHHHHHHHSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC----
T ss_pred CCEEEEEeeeCHHHHHHHHHHHHHHEEECCCCCCcCcEEEEeCCEEEEEecCCCCCccccchhhc
Confidence 78999999999999999999999999999999999999999999999999999999999999864
No 3
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=100.00 E-value=7.7e-57 Score=378.19 Aligned_cols=136 Identities=32% Similarity=0.669 Sum_probs=120.7
Q ss_pred CccHHHHHHHHHHHHhhcCCCcccCcceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCC
Q 024241 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ 194 (270)
Q Consensus 115 ~~~YeeLL~R~~~~l~~~np~~~~~~~R~~mP~p~V~~eG~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~~ 194 (270)
+|+|++||+|||++|. +..++.+||+||+|+|.++| +||+|+||.|||++|||+|+||++||++||||+|+||++
T Consensus 4 ~~~Y~~lL~R~~~~l~----~~~~~~~R~kmp~~~v~~eG-~kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~~ 78 (139)
T 3cw2_K 4 EKEYVEMLDRLYSKLP----EKGRKEGTQSLPNMIILNIG-NTTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDK 78 (139)
T ss_dssp SGGGHHHHTTTTTSST----TSSSCSSCCSCCCCCCCCCS-SSCCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSSS
T ss_pred ccCHHHHHHHHHHHcc----cccCCccceecCCCeEEEEC-CeEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECCC
Confidence 6899999999999994 44466789999999999999 579999999999999999999999999999999999988
Q ss_pred ceEEEEeecChHHHHHHHHHhccceEeeCCCCCCcceEEEcCcEEEeEeccCCCccccccc
Q 024241 195 QRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 195 ~rlii~G~f~~k~ie~~L~~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~i 255 (270)
+||||+|+|++++||++|++||++||+|++|+||||.|++++|+++++|+||||+++|.+|
T Consensus 79 ~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~~i 139 (139)
T 3cw2_K 79 GELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPVKPL 139 (139)
T ss_dssp CCCTTTCSCCSCCSCSTTTTTSSCCSSCCSSSSSCCCSCSSCSTTTSSCCC----------
T ss_pred CeEEEEeeeCHHHHHHHHHHHHHHeeECCCCCCcCcEEEEeCCeEEEEecCCCCCCccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999876
No 4
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-48 Score=334.07 Aligned_cols=126 Identities=25% Similarity=0.471 Sum_probs=118.2
Q ss_pred HHHHhhcCCCcccCcceeecCCCeEEEeCc---eeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeec-CCceEEEEe
Q 024241 126 FNILRENNPELAGDRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLD-GQQRLVVKG 201 (270)
Q Consensus 126 ~~~l~~~np~~~~~~~R~~mP~p~V~~eG~---kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid-~~~rlii~G 201 (270)
++++++++|. .+||+||+|+|.+||+ +||+|+||.|||++|||+|+||++||++||||+|+|| +++||||+|
T Consensus 10 ~nI~r~~~d~----~~RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G 85 (157)
T 2e9h_A 10 VNVNRSVSDQ----FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNG 85 (157)
T ss_dssp EESSTTCCCS----CCCCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEB
T ss_pred EeccCCCCCc----ccceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEe
Confidence 5677666554 4699999999999996 7999999999999999999999999999999999999 588999999
Q ss_pred ecChHHHHHHHHHhccceEeeCCCCCCcceEEE--cCcEEEeEeccCCCccccccc
Q 024241 202 RFAPKNFEGILRRYVNEYVICLGCKSPDTILSK--ENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 202 ~f~~k~ie~~L~~YI~eYVlC~~C~sPDT~L~k--e~rl~~l~C~aCGa~~~V~~i 255 (270)
+|++++||++|++||++||+|++|+||||.|++ ++|+++|+|.||||+++|...
T Consensus 86 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V~~~ 141 (157)
T 2e9h_A 86 SHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTH 141 (157)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEECCCC
T ss_pred eeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCCcccch
Confidence 999999999999999999999999999999998 799999999999999999864
No 5
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=100.00 E-value=3.9e-47 Score=328.29 Aligned_cols=120 Identities=25% Similarity=0.470 Sum_probs=114.4
Q ss_pred cccCcceeecCCCeEEEeCc---eeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecC-CceEEEEeecChHHHHHH
Q 024241 136 LAGDRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QQRLVVKGRFAPKNFEGI 211 (270)
Q Consensus 136 ~~~~~~R~~mP~p~V~~eG~---kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~-~~rlii~G~f~~k~ie~~ 211 (270)
.....+||+||+|+|.+||+ +||+|+||.|||++|||+|+||++||++||||+|+||+ ++||||+|+|++++||++
T Consensus 9 ~~D~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG~~~~~~i~~~ 88 (170)
T 2g2k_A 9 VMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDM 88 (170)
T ss_dssp CCSCCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEBCCCHHHHHHH
T ss_pred CCCccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHH
Confidence 34556899999999999995 69999999999999999999999999999999999997 889999999999999999
Q ss_pred HHHhccceEeeCCCCCCcceEEE--cCcEEEeEeccCCCccccccc
Q 024241 212 LRRYVNEYVICLGCKSPDTILSK--ENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 212 L~~YI~eYVlC~~C~sPDT~L~k--e~rl~~l~C~aCGa~~~V~~i 255 (270)
|++||++||+|++|+||||.|++ ++|+++|+|.||||+++|...
T Consensus 89 L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~ 134 (170)
T 2g2k_A 89 LDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTH 134 (170)
T ss_dssp HHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSS
T ss_pred HHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccccccc
Confidence 99999999999999999999999 899999999999999999764
No 6
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=99.87 E-value=5.1e-23 Score=146.67 Aligned_cols=52 Identities=35% Similarity=0.705 Sum_probs=49.7
Q ss_pred eEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEee
Q 024241 149 QVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGR 202 (270)
Q Consensus 149 ~V~~eG~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~~~rlii~G~ 202 (270)
+|.++| +||+|+||.|||++|||+|+||++||++||||+|++| ++||||+|+
T Consensus 1 ~v~~eG-~kTvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~ 52 (52)
T 1k8b_A 1 EILIEG-NRTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-GGRLILQRR 52 (52)
T ss_dssp CEEEET-TEEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-TTEEEEECC
T ss_pred CcEEEc-CeEEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-CCEEEEeCC
Confidence 589999 6799999999999999999999999999999999999 779999996
No 7
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=99.56 E-value=9.8e-16 Score=101.38 Aligned_cols=36 Identities=44% Similarity=0.883 Sum_probs=34.8
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCCccccccc
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~i 255 (270)
|+|++|+||||.|++++|+++++|+|||++++|++|
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v~~i 36 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIRPIRMI 36 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEEEECCC
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCccccccC
Confidence 899999999999999999999999999999999876
No 8
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=90.35 E-value=0.16 Score=34.46 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=26.2
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCCcccccccccc
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAG 258 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~ik~g 258 (270)
+.||.|++++ |+.+...-.|.|..||..-+-..|-.|
T Consensus 6 ~~CP~C~~~~--l~~d~~~gelvC~~CG~v~~e~~id~~ 42 (50)
T 1pft_A 6 KVCPACESAE--LIYDPERGEIVCAKCGYVIEENIIDMG 42 (50)
T ss_dssp CSCTTTSCCC--EEEETTTTEEEESSSCCBCCCCCCCCC
T ss_pred EeCcCCCCcc--eEEcCCCCeEECcccCCcccccccccC
Confidence 5699999964 665433235899999997777666543
No 9
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=89.09 E-value=0.33 Score=33.55 Aligned_cols=34 Identities=24% Similarity=0.572 Sum_probs=26.8
Q ss_pred eEeeCCCCCCcceEEE-------cCcEEEeEeccCCCcccc
Q 024241 219 YVICLGCKSPDTILSK-------ENRLFFLRCEKCGSGRSV 252 (270)
Q Consensus 219 YVlC~~C~sPDT~L~k-------e~rl~~l~C~aCGa~~~V 252 (270)
-+.||.|++.+..... |.-..|..|..||.+..+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~~ 49 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 49 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEEC
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEEe
Confidence 4689999999987654 356789999999987543
No 10
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=89.01 E-value=0.38 Score=33.46 Aligned_cols=34 Identities=24% Similarity=0.556 Sum_probs=25.6
Q ss_pred eEeeCCCCCCcceEEE-------cCcEEEeEeccCCCcccc
Q 024241 219 YVICLGCKSPDTILSK-------ENRLFFLRCEKCGSGRSV 252 (270)
Q Consensus 219 YVlC~~C~sPDT~L~k-------e~rl~~l~C~aCGa~~~V 252 (270)
.|.||.|+..+..... +.-..|..|..||.+...
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 6899999997765432 345789999999987543
No 11
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=88.76 E-value=0.23 Score=46.02 Aligned_cols=40 Identities=28% Similarity=0.570 Sum_probs=30.1
Q ss_pred cceEeeCCCCCCc-ceEEE----cCcEEEeEeccCCCcccccccc
Q 024241 217 NEYVICLGCKSPD-TILSK----ENRLFFLRCEKCGSGRSVAPIK 256 (270)
Q Consensus 217 ~eYVlC~~C~sPD-T~L~k----e~rl~~l~C~aCGa~~~V~~ik 256 (270)
...-.||.|+|+= ..+++ .++.-+|+|.-||+.+.+..++
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~ 224 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIK 224 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTS
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcC
Confidence 3467899999975 34555 3677899999999998876655
No 12
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=86.71 E-value=0.2 Score=36.90 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=24.9
Q ss_pred HhccceEeeCCCCCCcceEEEcCcEEEeEeccCCCccccc
Q 024241 214 RYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 214 ~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~ 253 (270)
..+-+.+.||.|++| |.-+..--.|.|.+||...+|.
T Consensus 3 ~~LLeiL~CP~ck~~---L~~~~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 3 TKLLDILACPICKGP---LKLSADKTELISKGAGLAYPIR 39 (69)
T ss_dssp CCGGGTCCCTTTCCC---CEECTTSSEEEETTTTEEEEEE
T ss_pred hHHHhheeCCCCCCc---CeEeCCCCEEEcCCCCcEecCc
Confidence 344567899999987 3332111257899999887764
No 13
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=86.04 E-value=1.8 Score=34.22 Aligned_cols=57 Identities=11% Similarity=0.165 Sum_probs=47.1
Q ss_pred ceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCC----ceEEEEeecChHHHHHHHHHhc
Q 024241 155 TKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ----QRLVVKGRFAPKNFEGILRRYV 216 (270)
Q Consensus 155 ~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~~----~rlii~G~f~~k~ie~~L~~YI 216 (270)
..-|++.+|.. .-+++-+.+.|.+.+|++|++-.+ ..+.|+|.+...-.+-++..++
T Consensus 37 K~VT~V~Gl~~-----~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~g~ 97 (108)
T 2ogh_A 37 KTLTTVQGVPE-----EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLG 97 (108)
T ss_dssp CCEEEEECCCT-----TSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCc-----chhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHcCC
Confidence 35688999962 448999999999999999999532 3899999999988888887765
No 14
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=82.58 E-value=0.44 Score=33.72 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=24.5
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCCcccccccc
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIK 256 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~ik 256 (270)
..||.|++.+ |+.+..--.+.|..||-.-.-..|-
T Consensus 12 ~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl~e~~iD 46 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAGDMICPECGLVVGDRVID 46 (58)
T ss_dssp CSBTTBSSSC--CEECSSSCCEECTTTCCEECCSCCC
T ss_pred ccCcCCCCCc--eeEeCCCCeEEeCCCCCEEeccccc
Confidence 4799999966 6665433468999999765444443
No 15
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=81.26 E-value=0.33 Score=35.83 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=24.6
Q ss_pred hccceEeeCCCCCCcceEEEcCcEEEeEeccCCCccccc
Q 024241 215 YVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 215 YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~ 253 (270)
.+-+.+.||.|++| |.-+..--.|.|.+||...+|.
T Consensus 4 ~LL~iL~CP~ck~~---L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 4 RLLDILVCPVCKGR---LEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CCCCCCBCTTTCCB---EEEETTTTEEEETTTTEEEEEE
T ss_pred HHhhheECCCCCCc---CEEeCCCCEEEcCCCCceecCC
Confidence 34567899999996 4332111257899999888774
No 16
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=81.19 E-value=1.4 Score=33.81 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=29.5
Q ss_pred ccceEeeCCCCCCcceEEE---cCcEEEeEeccCCCcccc
Q 024241 216 VNEYVICLGCKSPDTILSK---ENRLFFLRCEKCGSGRSV 252 (270)
Q Consensus 216 I~eYVlC~~C~sPDT~L~k---e~rl~~l~C~aCGa~~~V 252 (270)
+..+-.||-|+..++.-++ ..++-.+.|..||.....
T Consensus 20 L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 4567899999999876665 457999999999986543
No 17
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=80.94 E-value=0.34 Score=35.62 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=24.5
Q ss_pred hccceEeeCCCCCCcceEEEcCcEEEeEeccCCCccccc
Q 024241 215 YVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 215 YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~ 253 (270)
.+-+.+.||.|++|=+ +..+.. .|.|.+||...+|.
T Consensus 4 ~LL~iL~CP~ck~~L~-~~~~~~--~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLV-FDKSKD--ELICKGDRLAFPIK 39 (68)
T ss_dssp CCEEECBCTTTCCBCE-EETTTT--EEEETTTTEEEEEE
T ss_pred HHhhheECCCCCCcCe-EeCCCC--EEEcCCCCcEecCC
Confidence 3456789999998622 222222 57899999888764
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=80.39 E-value=0.64 Score=43.29 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=22.7
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCCc
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGSG 249 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa~ 249 (270)
+.||.|+++.|.|+.+-.-=.+.|..||-.
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred CcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 479999996566777543347899999954
No 19
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=80.32 E-value=1 Score=41.48 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=26.4
Q ss_pred eEeeCCCCCCcceEEE-------cCcEEEeEeccCCCccc
Q 024241 219 YVICLGCKSPDTILSK-------ENRLFFLRCEKCGSGRS 251 (270)
Q Consensus 219 YVlC~~C~sPDT~L~k-------e~rl~~l~C~aCGa~~~ 251 (270)
-+.|+.|+..++.+.. +.-.+|..|..||+++.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 4689999999986643 35677999999999864
No 20
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=78.78 E-value=0.55 Score=29.19 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=16.9
Q ss_pred eecChHHHHHHHHHhccceEe
Q 024241 201 GRFAPKNFEGILRRYVNEYVI 221 (270)
Q Consensus 201 G~f~~k~ie~~L~~YI~eYVl 221 (270)
.||..+||+.+|+.-|+.||.
T Consensus 7 trfdekqieelldncietfva 27 (31)
T 4h62_V 7 TRFDEKQIEELLDNCIETFVA 27 (31)
T ss_dssp ---CHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 489999999999999999884
No 21
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=78.56 E-value=0.34 Score=35.59 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=24.4
Q ss_pred hccceEeeCCCCCCcceEEEcCcEEEeEeccCCCccccc
Q 024241 215 YVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 215 YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~ 253 (270)
.+-+.+.||.|++|=+ +..+.. .|.|.+||...+|.
T Consensus 4 ~LL~iL~CP~ck~~L~-~~~~~~--~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLE-YHQDKQ--ELWSRQAKLAYPIK 39 (68)
T ss_dssp SSSCCCBCSSSCCBCE-EETTTT--EEEETTTTEEEEEE
T ss_pred HHhhheECCCCCCcCe-EeCCCC--EEEcCCCCcEecCC
Confidence 3456789999998622 222222 57899999888764
No 22
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=76.60 E-value=0.57 Score=34.35 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=25.8
Q ss_pred HHhccceEeeCCCCCCcceEEEcCcEEEeEeccCCCccccc
Q 024241 213 RRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 213 ~~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~ 253 (270)
+..+-+...||.|++|=+ +..+.+ .|.|.+||...||.
T Consensus 4 d~~LLeiL~CP~ck~~L~-~~~~~g--~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR-YLESEQ--LLVNERLNLAYRID 41 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE-EETTTT--EEEETTTTEEEEEE
T ss_pred CHHHHHHhCCCCCCCcCe-EeCCCC--EEEcCCCCccccCC
Confidence 445667889999999622 222232 46799999887764
No 23
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=74.91 E-value=0.77 Score=39.26 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=25.6
Q ss_pred eEeeCCCCCCcceEEE-------cCcEEEeEeccCCCccc
Q 024241 219 YVICLGCKSPDTILSK-------ENRLFFLRCEKCGSGRS 251 (270)
Q Consensus 219 YVlC~~C~sPDT~L~k-------e~rl~~l~C~aCGa~~~ 251 (270)
-+.||.|+..+..... +.-..|..|..||.++.
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 4789999999976542 34567889999999864
No 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=74.83 E-value=1.3 Score=38.76 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=26.2
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCccccccc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~i 255 (270)
-..||.|++..+.|+.+..-=-+.|..||..=.-..|
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriI 57 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLV 57 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCB
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCcee
Confidence 3579999996677887543347899999986443333
No 25
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=73.43 E-value=1.8 Score=34.20 Aligned_cols=32 Identities=16% Similarity=0.435 Sum_probs=25.7
Q ss_pred EeeCCCCCCcceEEE-------cCcEEEeEeccCCCccc
Q 024241 220 VICLGCKSPDTILSK-------ENRLFFLRCEKCGSGRS 251 (270)
Q Consensus 220 VlC~~C~sPDT~L~k-------e~rl~~l~C~aCGa~~~ 251 (270)
+.||.|++.+..... +.-..|.+|..||.++.
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 899999999877653 35667899999998763
No 26
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=72.86 E-value=2.6 Score=33.65 Aligned_cols=35 Identities=17% Similarity=0.444 Sum_probs=28.0
Q ss_pred EeeCCCCCCcceEEE-------cCcEEEeEeccCCCcccccc
Q 024241 220 VICLGCKSPDTILSK-------ENRLFFLRCEKCGSGRSVAP 254 (270)
Q Consensus 220 VlC~~C~sPDT~L~k-------e~rl~~l~C~aCGa~~~V~~ 254 (270)
+.||.|+..+..... +.-..|-.|..||.++....
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 789999999877654 35677899999999876643
No 27
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=72.31 E-value=2.4 Score=31.38 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=24.1
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCCcccccccc
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIK 256 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~ik 256 (270)
|-|| |+.. .+++. +--...|. ||+.-.+...+
T Consensus 5 v~C~-C~~~--~~~~~-~~kT~~C~-CG~~~~~~k~r 36 (71)
T 1gh9_A 5 FRCD-CGRA--LYSRE-GAKTRKCV-CGRTVNVKDRR 36 (71)
T ss_dssp EEET-TSCC--EEEET-TCSEEEET-TTEEEECCSSS
T ss_pred EECC-CCCE--EEEcC-CCcEEECC-CCCeeeeceEE
Confidence 7899 9998 34443 44478998 99999887766
No 28
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=71.79 E-value=0.48 Score=31.92 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=21.8
Q ss_pred eeCCCCCCcceEEEcC--cEEEeEeccCCCc
Q 024241 221 ICLGCKSPDTILSKEN--RLFFLRCEKCGSG 249 (270)
Q Consensus 221 lC~~C~sPDT~L~ke~--rl~~l~C~aCGa~ 249 (270)
.|..|+..+|-+-+.+ +- .-|+|||-.
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~--~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQ--PLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSC--EECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCC--cccHHHHHH
Confidence 5999999999998853 33 689999954
No 29
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=71.24 E-value=1.2 Score=30.33 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=23.7
Q ss_pred CCcceEEE---cCcEEEeEeccCCCcccccccc
Q 024241 227 SPDTILSK---ENRLFFLRCEKCGSGRSVAPIK 256 (270)
Q Consensus 227 sPDT~L~k---e~rl~~l~C~aCGa~~~V~~ik 256 (270)
+|+|.|+. +..+-+-.|++||..-.+.+|-
T Consensus 1 n~n~~ii~~ple~~~~YRvC~~CgkPi~lsAIv 33 (44)
T 2lo3_A 1 NPNAQLIEDPLDKPIQYRVCEKCGKPLALTAIV 33 (44)
T ss_dssp CCSSCCCCCCCCCCCCEEECTTTCCEEETTTHH
T ss_pred CCccchhhcccCccccchhhcccCCcchHHHHH
Confidence 47888887 5677899999999887777664
No 30
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=70.17 E-value=1.3 Score=31.17 Aligned_cols=35 Identities=29% Similarity=0.589 Sum_probs=25.6
Q ss_pred HhccceEeeCCCCCCcceEEEcCcEEEeEec--cCCCccccc
Q 024241 214 RYVNEYVICLGCKSPDTILSKENRLFFLRCE--KCGSGRSVA 253 (270)
Q Consensus 214 ~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~--aCGa~~~V~ 253 (270)
..+-+...||.|++| |.-+. -.|.|. +||...+|.
T Consensus 5 ~~lL~iL~CP~c~~~---L~~~~--~~L~C~~~~c~~~YPI~ 41 (56)
T 2kpi_A 5 AGLLEILACPACHAP---LEERD--AELICTGQDCGLAYPVR 41 (56)
T ss_dssp CSCTTSCCCSSSCSC---EEEET--TEEEECSSSCCCEEEEE
T ss_pred HHHHhheeCCCCCCc---ceecC--CEEEcCCcCCCcEEeeE
Confidence 445567899999996 44433 357899 999887764
No 31
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=69.93 E-value=9.3 Score=29.80 Aligned_cols=56 Identities=7% Similarity=0.017 Sum_probs=44.2
Q ss_pred CceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeec-CC---ceEEEEeecChHHHHHHHHH
Q 024241 154 GTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLD-GQ---QRLVVKGRFAPKNFEGILRR 214 (270)
Q Consensus 154 G~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid-~~---~rlii~G~f~~k~ie~~L~~ 214 (270)
|..-|+|.+|. -.-++.-|++.|.+.+|+.|++- +. ..+.|+|.+...-.+-++..
T Consensus 29 ~K~VT~V~Gl~-----~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 88 (101)
T 2xzm_F 29 RKCFTTVEGIP-----PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE 88 (101)
T ss_dssp TEEEEEEECCC-----TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CccEEEEecCC-----CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc
Confidence 34568888984 34579999999999999999994 31 28999999988877766665
No 32
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.54 E-value=2.7 Score=28.87 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=19.4
Q ss_pred ceEeeCCCCCCcceEEEcCcEEEeEeccCCCc
Q 024241 218 EYVICLGCKSPDTILSKENRLFFLRCEKCGSG 249 (270)
Q Consensus 218 eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~ 249 (270)
.+-.||.|+++-......+| +.|..||.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R---~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDR---WACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEECSSE---EECSSSCCE
T ss_pred ecccCCCCCCceEEecCCCe---EECCCCCCE
Confidence 35679999997432222334 699999975
No 33
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=68.65 E-value=0.53 Score=32.18 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=22.7
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCCc
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGSG 249 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa~ 249 (270)
..|..|+..+|-+-+.+.-=..-|+|||-.
T Consensus 5 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 34 (46)
T 1gnf_A 5 RECVNCGATATPLWRRDRTGHYLCNACGLY 34 (46)
T ss_dssp CCCTTTCCCCCSSCBCCTTCCCBCSHHHHH
T ss_pred CCCCCcCCCCCCcCccCCCCCccchHHHHH
Confidence 469999999999988532112689999863
No 34
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=66.55 E-value=3.5 Score=35.90 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=21.8
Q ss_pred eEeeCCCCCCcceEEE-cCcEEEeEeccCCCccc
Q 024241 219 YVICLGCKSPDTILSK-ENRLFFLRCEKCGSGRS 251 (270)
Q Consensus 219 YVlC~~C~sPDT~L~k-e~rl~~l~C~aCGa~~~ 251 (270)
...||.|++-|. +.. .++ ...|..||+..+
T Consensus 14 ~~~CP~Cg~~d~-~~~~~dg--~~~C~~Cg~~~~ 44 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLFSDG--HTFCYVCEKWTA 44 (255)
T ss_dssp EECCSSSCCSSC-EEEETTS--CEEETTTCCEEC
T ss_pred CCcCCCCCCCCC-ceEeCCC--CeecccCCCcCC
Confidence 589999998775 443 334 379999998743
No 35
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=65.55 E-value=5.8 Score=32.32 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=46.2
Q ss_pred EeCc-eeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCC----ceEEEEeecChHHHHHHHHHh
Q 024241 152 REGT-KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ----QRLVVKGRFAPKNFEGILRRY 215 (270)
Q Consensus 152 ~eG~-kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~~----~rlii~G~f~~k~ie~~L~~Y 215 (270)
|-|+ .-|+|.+|.. .-+++-|.+.|.+.+|+.|++-.+ ..+.|+|.+...-.+-++..-
T Consensus 51 R~grK~VT~V~GL~~-----~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~G 114 (126)
T 2if1_A 51 RNGRKTLTTVQGIAD-----DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIG 114 (126)
T ss_dssp SSSSCCBCEEBSCCT-----TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHHT
T ss_pred ecCCccEEEEeCCCC-----chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHcC
Confidence 4453 4788999962 447999999999999999999432 489999999988777666663
No 36
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=63.35 E-value=1.5 Score=40.51 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=25.4
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCccccccc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~i 255 (270)
-..||.|++..+.|+.+..-=.+.|..||..-.=..|
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~i 57 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLV 57 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccc
Confidence 3579999997666666533337899999986543333
No 37
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=62.60 E-value=4.7 Score=32.88 Aligned_cols=24 Identities=13% Similarity=0.372 Sum_probs=12.2
Q ss_pred HHHHHHHHhhcCceeecCCceEEEE
Q 024241 176 HVMTFLLAELGTSGSLDGQQRLVVK 200 (270)
Q Consensus 176 hv~kyl~~ELGt~gsid~~~rlii~ 200 (270)
..++|.+..+ +.|++-.+-+|.|.
T Consensus 42 e~l~faf~~~-~~gt~~e~A~L~i~ 65 (139)
T 3a43_A 42 DIVKFAMEQL-FAGTIAEGAEIEFV 65 (139)
T ss_dssp HHHHHHHHHH-HTTSTTTTCEEEEE
T ss_pred HHHHHHHHHH-HcCCcccCCEEEEE
Confidence 3445555555 44554334466664
No 38
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=61.81 E-value=2.8 Score=30.87 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=24.1
Q ss_pred ceEeeCCCCCCcceEEEcCcEEEeEeccCCCcc
Q 024241 218 EYVICLGCKSPDTILSKENRLFFLRCEKCGSGR 250 (270)
Q Consensus 218 eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~ 250 (270)
..|.||.|.+.-|....-.. ...|..||..=
T Consensus 6 m~VKCp~C~niq~VFShA~t--vV~C~~Cg~~L 36 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPST--IVKCIICGRTV 36 (66)
T ss_dssp EEEECTTTCCEEEEESSCSS--CEECSSSCCEE
T ss_pred EEEECCCCCCceEEEecCce--EEEcccCCCEE
Confidence 36999999998877766543 57899999754
No 39
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=61.42 E-value=0.93 Score=33.68 Aligned_cols=28 Identities=21% Similarity=0.505 Sum_probs=22.1
Q ss_pred EeeCCCCCCcceEEEc--CcEEEeEeccCCC
Q 024241 220 VICLGCKSPDTILSKE--NRLFFLRCEKCGS 248 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke--~rl~~l~C~aCGa 248 (270)
..|..|+..+|-+-+. +.- -.-|+|||-
T Consensus 9 ~~C~nC~tt~Tp~WRrg~~~~-g~LCNACGl 38 (71)
T 2kae_A 9 FQCSNCSVTETIRWRNIRSKE-GIQCNACFI 38 (71)
T ss_dssp CCCSSSCCSCCSSCCCCSSSS-CCCSSHHHH
T ss_pred CcCCccCCCCCCccccCCCCC-CccchHHHH
Confidence 5799999999999885 211 178999985
No 40
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=60.99 E-value=6.7 Score=31.28 Aligned_cols=37 Identities=16% Similarity=0.469 Sum_probs=25.3
Q ss_pred EeeCCCCC---Cc-ce-EEEcCc---EEEeEeccCCCcccccccc
Q 024241 220 VICLGCKS---PD-TI-LSKENR---LFFLRCEKCGSGRSVAPIK 256 (270)
Q Consensus 220 VlC~~C~s---PD-T~-L~ke~r---l~~l~C~aCGa~~~V~~ik 256 (270)
-+|..|++ |- |. +...++ .+...|..||...-..-.+
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p~~~ 110 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYPYLR 110 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEECC-
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEccCc
Confidence 38999999 43 22 222333 6899999999988776554
No 41
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=59.66 E-value=0.73 Score=33.50 Aligned_cols=40 Identities=28% Similarity=0.481 Sum_probs=27.5
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCC-------cccccccccce
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGS-------GRSVAPIKAGF 259 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa-------~~~V~~ik~gf 259 (270)
..|..|+..+|-+-+.+.-=-.-|+|||- .||+.--+.++
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~~~i 54 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGI 54 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCCSSC
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCCCcc
Confidence 46999999999998853111268999984 45555444554
No 42
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=58.84 E-value=1.2 Score=32.63 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=21.3
Q ss_pred EeeCCCCCCcceEEEcC--cEEEeEeccCCC
Q 024241 220 VICLGCKSPDTILSKEN--RLFFLRCEKCGS 248 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~--rl~~l~C~aCGa 248 (270)
..|..|+.-+|-+-+.+ +- .-|+|||-
T Consensus 10 ~~C~~C~t~~Tp~WR~gp~G~--~LCNaCGl 38 (66)
T 4gat_A 10 TTCTNCFTQTTPLWRRNPEGQ--PLCNACGL 38 (66)
T ss_dssp CCCTTTCCCCCSSCEEETTTE--EECHHHHH
T ss_pred CCCCCCCCCCCCcCCcCCCCC--CccHHHHH
Confidence 57999999999998743 33 56999964
No 43
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=58.54 E-value=6.7 Score=31.48 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=25.1
Q ss_pred EeeCCCCC---Cc-ce-EEEcCc---EEEeEeccCCCcccccccc
Q 024241 220 VICLGCKS---PD-TI-LSKENR---LFFLRCEKCGSGRSVAPIK 256 (270)
Q Consensus 220 VlC~~C~s---PD-T~-L~ke~r---l~~l~C~aCGa~~~V~~ik 256 (270)
-+|..|++ |- |. +...++ .+...|..||..+-..-.+
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p~~~ 105 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYPYIK 105 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEECCC
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEecCc
Confidence 38999999 43 22 222332 7899999999987665543
No 44
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=57.91 E-value=6.5 Score=30.09 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=19.7
Q ss_pred EeeCCCCCCcceEEE--cCcEEEeEeccCCCcccc
Q 024241 220 VICLGCKSPDTILSK--ENRLFFLRCEKCGSGRSV 252 (270)
Q Consensus 220 VlC~~C~sPDT~L~k--e~rl~~l~C~aCGa~~~V 252 (270)
..||-|.--.-.+.. .++ .-+|-+||+...+
T Consensus 38 ~~CPfh~e~~pSf~V~~~k~--~~~Cf~cg~gGd~ 70 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSVSPEKQ--IFHCFGCGAGGNA 70 (103)
T ss_dssp ECCSSSCCSSCCEEEETTTT--EEEETTTCCEECH
T ss_pred EECCCCCCCCCcEEEEcCCC--EEEECCCCCCCCH
Confidence 479998632224555 334 4689999976554
No 45
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=57.79 E-value=3.9 Score=32.18 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=23.9
Q ss_pred EeeCCCCCCcceEEE-cCcEEEeEeccCCCcccccc
Q 024241 220 VICLGCKSPDTILSK-ENRLFFLRCEKCGSGRSVAP 254 (270)
Q Consensus 220 VlC~~C~sPDT~L~k-e~rl~~l~C~aCGa~~~V~~ 254 (270)
-.||.|+|.=..-.- +++...+.|..||....+..
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 359999998321111 13566789999999887753
No 46
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=57.66 E-value=6 Score=31.24 Aligned_cols=35 Identities=17% Similarity=0.444 Sum_probs=29.3
Q ss_pred eEeeCCCCCCcceEEE----cCcEEEeEeccCCCccccc
Q 024241 219 YVICLGCKSPDTILSK----ENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 219 YVlC~~C~sPDT~L~k----e~rl~~l~C~aCGa~~~V~ 253 (270)
--+|..|....+.++- ++++.+++|..|...--++
T Consensus 13 ~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlIa 51 (100)
T 2e2z_A 13 AFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIA 51 (100)
T ss_dssp EEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEESC
T ss_pred EEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEee
Confidence 3689999998888875 5799999999999886554
No 47
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=57.33 E-value=7.4 Score=37.35 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=23.8
Q ss_pred eEeeCCCCCC-cceEEEc-----C--cEEEeEeccCCCccc
Q 024241 219 YVICLGCKSP-DTILSKE-----N--RLFFLRCEKCGSGRS 251 (270)
Q Consensus 219 YVlC~~C~sP-DT~L~ke-----~--rl~~l~C~aCGa~~~ 251 (270)
-..||.|+.+ .|.+..- + =++...|..||.+..
T Consensus 220 ~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 220 NTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp EECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred cccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 4689999988 4555432 2 355789999999874
No 48
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=55.72 E-value=6.4 Score=31.34 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=24.6
Q ss_pred EeeCCCCCCcceEE-EcCcEEEeEeccCCCccccc
Q 024241 220 VICLGCKSPDTILS-KENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 220 VlC~~C~sPDT~L~-ke~rl~~l~C~aCGa~~~V~ 253 (270)
.-||.|++.=..-. ++.+...+.|..||+..++.
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 56999998643222 22567789999999988765
No 49
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.24 E-value=4.1 Score=29.67 Aligned_cols=29 Identities=28% Similarity=0.665 Sum_probs=22.3
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSG 249 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~ 249 (270)
-|.|+.|.+.-|....-. ....|..||..
T Consensus 15 ~VkCp~C~~~q~VFSha~--t~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPA--TKVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEESSCS--SCEECSSSCCE
T ss_pred EEECCCCCCeeEEEecCC--eEEEccCcCCE
Confidence 599999999877655543 36789999975
No 50
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=55.23 E-value=5.2 Score=37.56 Aligned_cols=43 Identities=16% Similarity=0.437 Sum_probs=25.5
Q ss_pred HHHHHHHhc------cceE-eeCCCCCCcceEEE--cCcEEEeEeccCCCcccc
Q 024241 208 FEGILRRYV------NEYV-ICLGCKSPDTILSK--ENRLFFLRCEKCGSGRSV 252 (270)
Q Consensus 208 ie~~L~~YI------~eYV-lC~~C~sPDT~L~k--e~rl~~l~C~aCGa~~~V 252 (270)
|.++|.+|+ ..|+ +||-|.--.-.+.. +++ +-+|-+||+...+
T Consensus 16 I~dvi~~~v~lkk~G~~~~~~CPfh~ektpSf~V~~~k~--~~~CFgCg~gGd~ 67 (407)
T 2au3_A 16 IVDVISEYLNLEKVGSNYRTNCPFHPDDTPSFYVSPSKQ--IFKCFGCGVGGDA 67 (407)
T ss_dssp HHHHHHHHSCCEEETTEEEECCSSSCCSSCCEEEETTTT--EEEETTTCCEECH
T ss_pred HHHHHHHhcccccCCCeEEeeCcCCCCCCCeEEEECCCC--EEEECCCCCCCCH
Confidence 344455554 2343 89999533223554 344 5689999986554
No 51
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=52.38 E-value=7.8 Score=29.41 Aligned_cols=25 Identities=24% Similarity=0.708 Sum_probs=13.5
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCCc
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGSG 249 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa~ 249 (270)
++||.|.++ |..+++ +-.|.+|++.
T Consensus 3 ~~CP~C~~~---l~~~~~--~~~C~~C~~~ 27 (81)
T 2jrp_A 3 ITCPVCHHA---LERNGD--TAHCETCAKD 27 (81)
T ss_dssp CCCSSSCSC---CEECSS--EEECTTTCCE
T ss_pred CCCCCCCCc---cccCCC--ceECcccccc
Confidence 567777665 334444 2246665553
No 52
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=51.76 E-value=6.9 Score=28.10 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=17.0
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCccccc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~ 253 (270)
-+.|+.|+..- | .-.|..||+...++
T Consensus 6 mr~C~~CgvYT--L-------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 6 MKKCPKCGLYT--L-------KEICPKCGEKTVIP 31 (60)
T ss_dssp CEECTTTCCEE--S-------SSBCSSSCSBCBCC
T ss_pred ceeCCCCCCEe--c-------cccCcCCCCcCCCC
Confidence 46899994322 1 22399999887663
No 53
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=51.55 E-value=3.1 Score=34.03 Aligned_cols=32 Identities=25% Similarity=0.592 Sum_probs=0.0
Q ss_pred EeeCCCCCCcceEEE-------cCcEEEeEeccCCCccc
Q 024241 220 VICLGCKSPDTILSK-------ENRLFFLRCEKCGSGRS 251 (270)
Q Consensus 220 VlC~~C~sPDT~L~k-------e~rl~~l~C~aCGa~~~ 251 (270)
+.||.|+..+..... |.-..|..|..||.++.
T Consensus 93 ~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 93 RECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWK 131 (133)
T ss_dssp ---------------------------------------
T ss_pred CCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence 799999999875532 35677889999998764
No 54
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=50.98 E-value=10 Score=35.69 Aligned_cols=46 Identities=15% Similarity=0.445 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccce---E---eeCCCCCCc--ceEE--------E-----cCcEEEeEeccCCCccc
Q 024241 206 KNFEGILRRYVNEY---V---ICLGCKSPD--TILS--------K-----ENRLFFLRCEKCGSGRS 251 (270)
Q Consensus 206 k~ie~~L~~YI~eY---V---lC~~C~sPD--T~L~--------k-----e~rl~~l~C~aCGa~~~ 251 (270)
--|..+|+=|=.+| | .|+.|+++. |... . -+++..-+|..||+..-
T Consensus 100 ~ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~r 166 (335)
T 1x3z_A 100 YLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITR 166 (335)
T ss_dssp HHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEE
T ss_pred HHHHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccc
Confidence 45677887775543 3 699999986 3441 0 13788899999999654
No 55
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.91 E-value=4.4 Score=28.25 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=23.7
Q ss_pred HHhccceEeeCCCCCCcceEEEcCcEEEeEeccCCCccccccc
Q 024241 213 RRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 213 ~~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~i 255 (270)
..+....-+|+.|++. +..-.-.|..||+. .+.+-
T Consensus 8 e~r~~~k~iCpkC~a~-------~~~gaw~CrKCG~~-~lr~k 42 (51)
T 3j21_g 8 EARIFKKYVCLRCGAT-------NPWGAKKCRKCGYK-RLRPK 42 (51)
T ss_dssp HHHSSSEEECTTTCCE-------ECTTCSSCSSSSSC-CCEEE
T ss_pred HHHHhCCccCCCCCCc-------CCCCceecCCCCCc-ccccc
Confidence 3445566789999986 23335679999998 44443
No 56
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=50.07 E-value=4.8 Score=30.67 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=22.8
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSG 249 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~ 249 (270)
.|.|+.|.+.-|....-. ....|..||..
T Consensus 32 ~VkCp~C~n~q~VFShA~--t~V~C~~Cg~~ 60 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQ--STIICEKCSAI 60 (81)
T ss_dssp EEECSSSCCEEEEETTCS--SCEECSSSCCE
T ss_pred EeECCCCCCeeEEEecCc--cEEEccCCCCE
Confidence 599999999877665543 36789999976
No 57
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=49.51 E-value=7.2 Score=29.53 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=26.2
Q ss_pred ecChHHHHHH-HHHhccceEeeCCCCCCcceEEEcCcEEEeEeccCCCcccc
Q 024241 202 RFAPKNFEGI-LRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSV 252 (270)
Q Consensus 202 ~f~~k~ie~~-L~~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V 252 (270)
..-.+.+..+ +.... -..||.|+.+ +++....-.++|..||..-.-
T Consensus 11 ~~lRk~vk~ie~~q~~--~y~Cp~CG~~---~v~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 11 RVSRRRVAEIESEMNE--DHACPNCGED---RVDRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp HHHHHHHHHHHHHHHS--CEECSSSCCE---EEEEEETTEEEETTTCCEEEC
T ss_pred hHHHHHHHHHHHhccc--cCcCCCCCCc---ceeccCCCeEECCCCCCEecC
Confidence 3334455554 33332 3489999973 333222226799999987443
No 58
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=48.64 E-value=6.5 Score=30.02 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=23.3
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCcc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSGR 250 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~ 250 (270)
-|.|+.|.+.-|....-.- ...|..||..=
T Consensus 34 ~VkCp~C~~~q~VFSha~t--~V~C~~Cg~~L 63 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQT--AVTCESCSTIL 63 (82)
T ss_dssp EEECTTSCSCEEEESBCSS--CCCCSSSCCCC
T ss_pred EEECCCCCCeeEEEecCCe--EEEccccCCEE
Confidence 5999999998877766543 57899999753
No 59
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=48.57 E-value=13 Score=28.65 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=21.6
Q ss_pred eeCCCCCCcceEEE-------cC------cEEEeEeccCCCccccc
Q 024241 221 ICLGCKSPDTILSK-------EN------RLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 221 lC~~C~sPDT~L~k-------e~------rl~~l~C~aCGa~~~V~ 253 (270)
.||.|+...+.... .+ .+-...|..||..-...
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d~ 49 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNK 49 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECCH
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeecH
Confidence 69999987543322 22 23467899999875543
No 60
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=47.11 E-value=8.1 Score=31.02 Aligned_cols=56 Identities=7% Similarity=-0.032 Sum_probs=43.9
Q ss_pred ceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHHHHHHHh
Q 024241 155 TKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY 215 (270)
Q Consensus 155 ~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~~~rlii~G~f~~k~ie~~L~~Y 215 (270)
..-|+|.+|..- .-++.-|.+.|...+|+.|++-+ +.+.|+|.+...-.+-++...
T Consensus 45 K~VT~V~Gl~~~----~~dlk~laK~LKkk~acgGtVk~-~~IeiQGD~r~~i~~~L~~~G 100 (116)
T 1d1r_A 45 KGVCLITGVDLD----DAELTKLAAELKKKCGCGGAVKD-GVIEIQGDKRDLLKSLLEAKG 100 (116)
T ss_dssp CCCEEEECCCSC----HHHHHHHHHHHTTSSSSCCBCCS-SCEEECSCCHHHHHHHHHHHT
T ss_pred CeEEEEeCCcCc----hhhHHHHHHHHHHHhcCCcEEcC-CEEEEeCcHHHHHHHHHHHcC
Confidence 367899998631 12467789999999999999974 599999999888777776663
No 61
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=46.75 E-value=6.1 Score=35.24 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHHhccceEeeCCCCCCcceEEEcCcEEEeEeccCCCccc
Q 024241 210 GILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRS 251 (270)
Q Consensus 210 ~~L~~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~ 251 (270)
..|..|-..+-.|+.|++|-.. .++ -+-..|.+||...-
T Consensus 98 ~~l~~w~~~~~fC~~CG~~~~~--~~~-~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 98 VQLAEFYRSHKYCGYCGHEMYP--SKT-EWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHHHTTSBCTTTCCBEEE--CSS-SSCEEESSSSCEEC
T ss_pred HHHHhhhhcCCccccCCCcCcc--CCC-ceeeeCCCCCCEec
Confidence 3466677778999999998543 233 34779999998644
No 62
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=44.11 E-value=5.6 Score=30.63 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=22.4
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCcc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSGR 250 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~ 250 (270)
-|.|+.|.+.-|....-. ....|..||..=
T Consensus 36 ~VkCp~C~~~~~VFShA~--t~V~C~~CgtvL 65 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQ--TVVVCPGCQTVL 65 (86)
T ss_dssp EEECTTTCCEEEEETTCS--SCCCCSSSCCCC
T ss_pred EEECCCCCCeeEEEecCC--cEEEccCCCCEe
Confidence 499999999876665543 367899999753
No 63
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=43.65 E-value=6.1 Score=30.97 Aligned_cols=29 Identities=28% Similarity=0.655 Sum_probs=19.5
Q ss_pred CCcceEEE---cCcEEEeEeccCCCccccccc
Q 024241 227 SPDTILSK---ENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 227 sPDT~L~k---e~rl~~l~C~aCGa~~~V~~i 255 (270)
+|.|.|+. +..+-|-.|++||..=.+.+|
T Consensus 59 n~nt~ii~~~Ld~~~~YRvCn~CGkPI~l~AI 90 (96)
T 3mhs_E 59 NPNAQLIEDPLDKPIQYRVCEKCGKPLALTAI 90 (96)
T ss_dssp CTTCCCCSSTTSSSCCCEEETTTCCEECGGGT
T ss_pred CCcchhhcccCCCcccchhhhccCCceeHHHH
Confidence 46666665 334667888888877666665
No 64
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=42.77 E-value=23 Score=25.86 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=25.2
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 024241 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (270)
Q Consensus 162 Nf~dI~k~L~R~p~hv~kyl~~ELGt~ 188 (270)
++.+||..++-++.||.+.|..++|++
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~~~g~s 47 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKKNFGIP 47 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 578999999999999999999999985
No 65
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=42.07 E-value=12 Score=29.32 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHhhcCcee-ecCCceEEEE
Q 024241 173 QPDHVMTFLLAELGTSGS-LDGQQRLVVK 200 (270)
Q Consensus 173 ~p~hv~kyl~~ELGt~gs-id~~~rlii~ 200 (270)
.|+. ++|.+..+ +.|+ +-.+-+|.|.
T Consensus 42 ~~e~-l~f~f~~~-~~gt~~~e~a~L~i~ 68 (119)
T 2kdx_A 42 DKSL-FVSAFETF-REESLVCKDAILDIV 68 (119)
T ss_dssp CHHH-HHHHHHHH-GGGCTTTSSCCEEEE
T ss_pred cHHH-HHHHHHHH-HhCChhhcCcEEEEE
Confidence 3444 45555555 5666 5444577774
No 66
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.92 E-value=23 Score=26.07 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=25.1
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 024241 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (270)
Q Consensus 162 Nf~dI~k~L~R~p~hv~kyl~~ELGt~ 188 (270)
++.+||..++-++.||.+.|...+|++
T Consensus 20 ~~~~lA~~~~~s~~~l~r~fk~~~G~s 46 (108)
T 3mn2_A 20 TIEKLTALTGISSRGIFKAFQRSRGYS 46 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhCcC
Confidence 478999999999999999999999984
No 67
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=40.60 E-value=17 Score=28.67 Aligned_cols=28 Identities=29% Similarity=0.581 Sum_probs=19.8
Q ss_pred ceEeeCCCCCCcceEEEcCcEEEeEeccCCCcc
Q 024241 218 EYVICLGCKSPDTILSKENRLFFLRCEKCGSGR 250 (270)
Q Consensus 218 eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~ 250 (270)
.-.+||.|..+ |...++.+ .|.+|+..-
T Consensus 31 M~~~CP~Cq~e---L~~~g~~~--hC~~C~~~f 58 (101)
T 2jne_A 31 MELHCPQCQHV---LDQDNGHA--RCRSCGEFI 58 (101)
T ss_dssp CCCBCSSSCSB---EEEETTEE--EETTTCCEE
T ss_pred ccccCccCCCc---ceecCCEE--ECccccchh
Confidence 33899999987 55666633 588888743
No 68
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=40.41 E-value=19 Score=29.05 Aligned_cols=78 Identities=19% Similarity=0.363 Sum_probs=33.3
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHHHHHHHhccceEeeCCCCCCcceEEEc-CcEEE
Q 024241 162 NFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE-NRLFF 240 (270)
Q Consensus 162 Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~~~rlii~G~f~~k~ie~~L~~YI~eYVlC~~C~sPDT~L~ke-~rl~~ 240 (270)
|+.-+-..|+++.....+- -+-.|..|.+- -|+ |+.-.+.+..+.-.=- .-..||-|+. +.+.+. .++|
T Consensus 10 ~~~~~~~~~~~~~~~Makr-tKkVGi~GkyG--~RY---GaslRK~vkkiE~~q~-akytCPfCGk--~~vKR~avGIW- 79 (116)
T 3cc2_Z 10 NLEGLMWPLGGQQTTMASK-SGKTGSSGRFG--ARY---GRVSRRRVAEIESEMN-EDHACPNCGE--DRVDRQGTGIW- 79 (116)
T ss_dssp -------------------------CGGGGT--TCS---CHHHHHHHHHHHHHHH-SCEECSSSCC--EEEEEEETTEE-
T ss_pred chhhhhhhhhhhHHHHHhc-cCccccccccc--ccc---chHHHHHHHHHHHHhc-cCCcCCCCCC--ceeEecCceeE-
Confidence 5555555666664322211 11245555543 233 6666677766632222 2357999997 346653 5665
Q ss_pred eEeccCCCcc
Q 024241 241 LRCEKCGSGR 250 (270)
Q Consensus 241 l~C~aCGa~~ 250 (270)
+|..||..-
T Consensus 80 -~C~~Cgk~f 88 (116)
T 3cc2_Z 80 -QCSYCDYKF 88 (116)
T ss_dssp -EETTTCCEE
T ss_pred -ECCCCCCEE
Confidence 899999873
No 69
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=40.37 E-value=27 Score=25.22 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=19.7
Q ss_pred eeCCCCCCcce-------EEEcC------cEEEeEeccCCCccc
Q 024241 221 ICLGCKSPDTI-------LSKEN------RLFFLRCEKCGSGRS 251 (270)
Q Consensus 221 lC~~C~sPDT~-------L~ke~------rl~~l~C~aCGa~~~ 251 (270)
.||.|++..+. +...+ .+-...|..||..--
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEEC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEE
Confidence 69999987432 12233 234568999998643
No 70
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=40.36 E-value=4.1 Score=31.85 Aligned_cols=26 Identities=27% Similarity=0.600 Sum_probs=20.5
Q ss_pred cceEeeCCCCCCcceEEEcCcEEEeEeccCCC
Q 024241 217 NEYVICLGCKSPDTILSKENRLFFLRCEKCGS 248 (270)
Q Consensus 217 ~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa 248 (270)
+..++|.-|++---.|.+. .|.+||.
T Consensus 14 KtHtlCrRCG~~syH~qK~------~Ca~CGy 39 (94)
T 4a18_A 14 KTHTLCRRCGKATYHKQKL------RCAACGY 39 (94)
T ss_dssp CCEEECTTTCSEEEETTTT------EESSSCG
T ss_pred CccceecCcCchhhhhccc------cccccCC
Confidence 4578999999876555544 7999998
No 71
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=39.59 E-value=4.8 Score=31.48 Aligned_cols=39 Identities=8% Similarity=0.002 Sum_probs=25.4
Q ss_pred hccceEeeCCCCCCcceEEEc-----------------Cc-------EEEeEeccCCCccccc
Q 024241 215 YVNEYVICLGCKSPDTILSKE-----------------NR-------LFFLRCEKCGSGRSVA 253 (270)
Q Consensus 215 YI~eYVlC~~C~sPDT~L~ke-----------------~r-------l~~l~C~aCGa~~~V~ 253 (270)
.+-+...||.|+.|=+.+... ++ --.|.|..||-..||.
T Consensus 4 ~LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~ 66 (97)
T 2k5r_A 4 KLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIE 66 (97)
T ss_dssp TTCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEE
T ss_pred HHhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCcccc
Confidence 345667899999875443221 00 1268899999888763
No 72
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=39.07 E-value=27 Score=25.67 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=25.3
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 024241 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (270)
Q Consensus 162 Nf~dI~k~L~R~p~hv~kyl~~ELGt~ 188 (270)
++.+||..++-++.|+.+.|..++|++
T Consensus 22 ~~~~lA~~~~~S~~~l~r~fk~~~G~s 48 (107)
T 2k9s_A 22 DIASVAQHVCLSPSRLSHLFRQQLGIS 48 (107)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHCcC
Confidence 588999999999999999999999985
No 73
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=39.01 E-value=13 Score=33.77 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=41.4
Q ss_pred eecChHHHHHHH-HHhccceEeeCCCCCCc-ceEEEcCcEEEeEeccCCCcccccccccceE
Q 024241 201 GRFAPKNFEGIL-RRYVNEYVICLGCKSPD-TILSKENRLFFLRCEKCGSGRSVAPIKAGFQ 260 (270)
Q Consensus 201 G~f~~k~ie~~L-~~YI~eYVlC~~C~sPD-T~L~ke~rl~~l~C~aCGa~~~V~~ik~gf~ 260 (270)
|-.+..|+-.+| ..++.+...||.|++.- +.+.-...+--..|..|+...-+++-+.-|.
T Consensus 15 ~YkS~SQ~aRVLTE~Wv~~n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyELKSk~~~~~ 76 (257)
T 4esj_A 15 TYKSNSQKARILTEDWVYRQSYCPNCGNNPLNHFENNRPVADFYCNHCSEEFELKSKKGNFS 76 (257)
T ss_dssp HTTTCTTHHHHHHHHHHHHHCCCTTTCCSSCEEC----CCCEEECTTTCCEEEEEEEESSCC
T ss_pred hccChhheehhhhHHHHHHCCcCCCCCChhhhhccCCCcccccccCCcchhheeccccCccC
Confidence 344555666665 57899999999999954 3333344677889999999988877764443
No 74
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=38.74 E-value=13 Score=26.71 Aligned_cols=24 Identities=33% Similarity=0.742 Sum_probs=16.5
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeE--eccCCCccccc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLR--CEKCGSGRSVA 253 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~--C~aCGa~~~V~ 253 (270)
-..|+.| ++|.|+ |..||....++
T Consensus 5 mr~C~~C-----------g~YTLk~~CP~CG~~t~~a 30 (60)
T 2aus_D 5 IRKCPKC-----------GRYTLKETCPVCGEKTKVA 30 (60)
T ss_dssp CEECTTT-----------CCEESSSBCTTTCSBCEES
T ss_pred ceECCCC-----------CCEEccccCcCCCCccCCC
Confidence 3579999 344444 99999876653
No 75
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=38.68 E-value=5 Score=29.49 Aligned_cols=31 Identities=26% Similarity=0.556 Sum_probs=20.2
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCCcccccc
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAP 254 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~ 254 (270)
-+|+.|+..-... .. --++|..||++--.+.
T Consensus 29 Y~C~~CG~~~e~~--~~--d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 29 YICAECSSKLSLS--RT--DAVRCKDCGHRILLKA 59 (70)
T ss_dssp EECSSSCCEECCC--TT--STTCCSSSCCCCCBCC
T ss_pred EECCCCCCcceeC--CC--CCccCCCCCceEeEec
Confidence 3699999864333 22 1358999999655443
No 76
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=38.35 E-value=32 Score=29.13 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=19.3
Q ss_pred eEeeCCCCCCcceEE-EcCcEEEeEeccCCCc
Q 024241 219 YVICLGCKSPDTILS-KENRLFFLRCEKCGSG 249 (270)
Q Consensus 219 YVlC~~C~sPDT~L~-ke~rl~~l~C~aCGa~ 249 (270)
|--||.|..- ++ -.++ ..+|+.||..
T Consensus 42 Y~ACp~CnKK---V~~~~~g--~~~CekC~~~ 68 (172)
T 3u50_C 42 YYRCTCQGKS---VLKYHGD--SFFCESCQQF 68 (172)
T ss_dssp EEECTTSCCC---EEEETTT--EEEETTTTEE
T ss_pred ehhchhhCCE---eeeCCCC--eEECCCCCCC
Confidence 9999999763 43 2344 3589999997
No 77
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=38.28 E-value=28 Score=25.65 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=25.7
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCce
Q 024241 162 NFMDLCKTMHRQPDHVMTFLLAELGTSG 189 (270)
Q Consensus 162 Nf~dI~k~L~R~p~hv~kyl~~ELGt~g 189 (270)
++.+||..++-++.||.+.|..++|++-
T Consensus 23 ~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 50 (108)
T 3oou_A 23 SLKTLGNDFHINAVYLGQLFQKEMGEHF 50 (108)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHSSCH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 5789999999999999999999999853
No 78
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=36.40 E-value=29 Score=25.79 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=25.3
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 024241 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (270)
Q Consensus 162 Nf~dI~k~L~R~p~hv~kyl~~ELGt~ 188 (270)
++.+||..++-++.||.+.|..++|++
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 25 STDDIAYYVGVSRRQLERLFKQYLGTV 51 (113)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 578999999999999999999999985
No 79
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=36.12 E-value=9.1 Score=28.83 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=23.6
Q ss_pred eEeeCCCC---------CCcceEEEcCcEEEeEeccCCCccccccccc
Q 024241 219 YVICLGCK---------SPDTILSKENRLFFLRCEKCGSGRSVAPIKA 257 (270)
Q Consensus 219 YVlC~~C~---------sPDT~L~ke~rl~~l~C~aCGa~~~V~~ik~ 257 (270)
--.|+.|. -|+| .-+-.|.+||...+...+..
T Consensus 17 tWVCpICsfsN~v~s~fdp~~-------~~lPpC~aCGIkP~~~~i~~ 57 (76)
T 2j9u_B 17 TWVCPICMVSNETQGEFTKDT-------LPTPICINCGVPADYELTKS 57 (76)
T ss_dssp EEECTTTCCEEEESSCCCTTC-------SSCCBCTTTCCBCCHHHHGG
T ss_pred ceECccccccCcCccccCCCC-------CCCCcccccCccCCHHHHHH
Confidence 35799998 4544 55789999999988655443
No 80
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=35.76 E-value=29 Score=26.64 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=25.8
Q ss_pred EehHHHHHHhCCChHHHHHHHHHhhcCc
Q 024241 161 VNFMDLCKTMHRQPDHVMTFLLAELGTS 188 (270)
Q Consensus 161 ~Nf~dI~k~L~R~p~hv~kyl~~ELGt~ 188 (270)
.++.+||..++-+|.|+.+.|..++|.+
T Consensus 94 ~sl~~lA~~~g~S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 94 VTLEALADQVAMSPFHLHRLFKATTGMT 121 (133)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 4588999999999999999999999985
No 81
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=34.45 E-value=14 Score=27.78 Aligned_cols=6 Identities=50% Similarity=1.680 Sum_probs=3.5
Q ss_pred eccCCC
Q 024241 243 CEKCGS 248 (270)
Q Consensus 243 C~aCGa 248 (270)
|..||.
T Consensus 33 Cp~CGn 38 (79)
T 2con_A 33 CGHCGN 38 (79)
T ss_dssp CSSSCC
T ss_pred ccccCc
Confidence 555555
No 82
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.01 E-value=21 Score=27.08 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=14.4
Q ss_pred HHHHHHHHhccceEeeCCCCCCcc
Q 024241 207 NFEGILRRYVNEYVICLGCKSPDT 230 (270)
Q Consensus 207 ~ie~~L~~YI~eYVlC~~C~sPDT 230 (270)
.++..|..|=..--.||.|++|-+
T Consensus 35 ~l~~~l~~l~~~g~~CPvCgs~l~ 58 (112)
T 1l8d_A 35 DLKTAIEELKKAKGKCPVCGRELT 58 (112)
T ss_dssp HHHHHHHHHTTCSEECTTTCCEEC
T ss_pred HHHHHHHHhhcCCCCCCCCCCcCC
Confidence 444445444332457999999844
No 83
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=33.76 E-value=5.3 Score=31.86 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=21.8
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCC
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGS 248 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa 248 (270)
-.|..|+..+|-+-+.+.--..-|+|||-
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl 34 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGL 34 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHH
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhh
Confidence 36999999999998742111468999995
No 84
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=33.59 E-value=14 Score=27.56 Aligned_cols=16 Identities=25% Similarity=0.303 Sum_probs=13.6
Q ss_pred eEeeCCCCCCcceEEE
Q 024241 219 YVICLGCKSPDTILSK 234 (270)
Q Consensus 219 YVlC~~C~sPDT~L~k 234 (270)
|..|+.|+|.+|.++.
T Consensus 55 g~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 55 GMKCKICESYNTAQAG 70 (79)
T ss_dssp CCCCTTTSCCCEEESC
T ss_pred cccCcCCCCcCeEecC
Confidence 5689999999998764
No 85
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=33.46 E-value=5.4 Score=31.81 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=22.1
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCCc
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGSG 249 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa~ 249 (270)
..|..|+..+|-+-+.+..=..-|+|||-.
T Consensus 60 ~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~ 89 (115)
T 4hc9_A 60 TSCANCQTTTTTLWRRNANGDPVCNACGLY 89 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHH
T ss_pred ccCCCcCCCCcceeEECCCCCCcchHHHHH
Confidence 589999999999987431113559999843
No 86
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=32.87 E-value=12 Score=30.52 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=23.6
Q ss_pred eEeeCCCCCCcceEE-EcCcEEEeEeccCCCccccc
Q 024241 219 YVICLGCKSPDTILS-KENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 219 YVlC~~C~sPDT~L~-ke~rl~~l~C~aCGa~~~V~ 253 (270)
.-.||.|+|.=..-. ++++...+.|..||+...+.
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~ 59 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 59 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCS
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcC
Confidence 456999998531111 12356688999999987654
No 87
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=31.98 E-value=36 Score=26.02 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhcCCCcccCcceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCc
Q 024241 118 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTS 188 (270)
Q Consensus 118 YeeLL~R~~~~l~~~np~~~~~~~R~~mP~p~V~~eG~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~ 188 (270)
...++.++...|..+ +. +. .++.+||..++-++.||.+.|..++|++
T Consensus 9 ~~~~i~~~~~~i~~~-~~-----------------~~------~sl~~lA~~~~~S~~~l~r~fk~~~G~s 55 (129)
T 1bl0_A 9 DAITIHSILDWIEDN-LE-----------------SP------LSLEKVSERSGYSKWHLQRMFKKETGHS 55 (129)
T ss_dssp CHHHHHHHHHHHHTT-TT-----------------SC------CCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHc-cC-----------------CC------CCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 357888888888532 11 00 3578999999999999999999999984
No 88
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=30.80 E-value=20 Score=27.85 Aligned_cols=41 Identities=17% Similarity=0.402 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHhccceEeeCCCCCCcceEEEc-CcEEEeEeccCCCc
Q 024241 204 APKNFEGILRRYVNEYVICLGCKSPDTILSKE-NRLFFLRCEKCGSG 249 (270)
Q Consensus 204 ~~k~ie~~L~~YI~eYVlC~~C~sPDT~L~ke-~rl~~l~C~aCGa~ 249 (270)
-.+++..+--.=-..| .||-|+... +.+. .++ -+|..||..
T Consensus 22 lRK~vkkie~~q~~ky-~CpfCgk~~--vkR~a~GI--W~C~~Cg~~ 63 (92)
T 3iz5_m 22 LRKQIKKMEVSQHSKY-FCEFCGKFA--VKRKAVGI--WGCKDCGKV 63 (92)
T ss_dssp HHHHHHHHHHHHHSCB-CCTTTCSSC--BEEEETTE--EECSSSCCE
T ss_pred HHHHHHHHHHHHhccc-cCcccCCCe--eEecCcce--EEcCCCCCE
Confidence 3445555444444455 799999874 5553 454 479999864
No 89
>2mob_A Protein (methane monooxygenase regulatory protein B); oxidoreductase, methane oxidation; NMR {Methylosinus trichosporium} SCOP: d.137.1.1
Probab=29.74 E-value=2.3e+02 Score=23.24 Aligned_cols=66 Identities=8% Similarity=0.116 Sum_probs=47.4
Q ss_pred hhcCCCcccCcceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecC-CceEEEEee
Q 024241 130 RENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QQRLVVKGR 202 (270)
Q Consensus 130 ~~~np~~~~~~~R~~mP~p~V~~eG~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~-~~rlii~G~ 202 (270)
.+.||+.. ..=.|.-|++++ -..+..+..+|...|.|+=.- ..|...=..+.|.++. +++++|.-.
T Consensus 61 ~~DNP~~~-----V~d~pa~vRIda-~G~L~i~retIeE~LGR~fd~-~eleVnmsS~~GRi~~~DD~f~l~se 127 (138)
T 2mob_A 61 KAKNPSIV-----VEDKAGFWWIKA-DGAIEIDAAEAGELLGKPFSV-YDLLINVSSTVGRAYTLGTKFTITSE 127 (138)
T ss_dssp HHTSSCCE-----EEECSSCEEEEE-SSEEEEECHHHHHHTCSTHHH-HHHHHHGGGCSSCEEEETTEEEEESC
T ss_pred cccCCCeE-----EEecCCEEEEec-CCeEEEEHHHHHHHhCCCCcH-HHeehhheeeeeeEEEeCCEEEEEec
Confidence 67889843 122334566666 456789999999999998554 7777777788999875 568887643
No 90
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=29.45 E-value=20 Score=29.16 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=4.3
Q ss_pred EeccCCCc
Q 024241 242 RCEKCGSG 249 (270)
Q Consensus 242 ~C~aCGa~ 249 (270)
.|..||+.
T Consensus 63 ~Cp~C~s~ 70 (145)
T 3irb_A 63 YCEHCFVK 70 (145)
T ss_dssp EETTTTEE
T ss_pred hCcCCCCC
Confidence 35555554
No 91
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=28.95 E-value=45 Score=23.08 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=19.4
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCccc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSGRS 251 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~ 251 (270)
-..||.|++-- .+.... -.+.|..||.+-.
T Consensus 18 ~~fCPkCG~~~-~ma~~~--dr~~C~kCgyt~~ 47 (55)
T 2k4x_A 18 HRFCPRCGPGV-FLAEHA--DRYSCGRCGYTEF 47 (55)
T ss_dssp SCCCTTTTTTC-CCEECS--SEEECTTTCCCEE
T ss_pred cccCcCCCCce-eEeccC--CEEECCCCCCEEE
Confidence 35699999843 222211 2678999998753
No 92
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=28.92 E-value=26 Score=31.13 Aligned_cols=94 Identities=17% Similarity=0.381 Sum_probs=55.8
Q ss_pred eeEEEEehHH-------HHHHhCCChHHHHHHHHHhhcCceeecC--CceEEEEeecChHHHHHHHHHhccceE------
Q 024241 156 KKTVFVNFMD-------LCKTMHRQPDHVMTFLLAELGTSGSLDG--QQRLVVKGRFAPKNFEGILRRYVNEYV------ 220 (270)
Q Consensus 156 kKTvi~Nf~d-------I~k~L~R~p~hv~kyl~~ELGt~gsid~--~~rlii~G~f~~k~ie~~L~~YI~eYV------ 220 (270)
..++.+||.+ +|..|-..|..++.+|..-+-.--.+.. +=.+.+.|-.....|.++=-.+|...|
T Consensus 41 ~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~vr~~~~~~~~~iR~L~~~~igkLV~v~GiV 120 (279)
T 1ltl_A 41 VRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRKNVDLNIRFSGISNVIPLRELRSKFIGKFVAVDGIV 120 (279)
T ss_dssp CCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTCTTCCCCCCEEEEECCSCBCCGGGCCGGGTTSEEEEEEEE
T ss_pred CeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHhccccCCeeEEEEEECCCCCCCcccCChhhCCCEEEEEEEE
Confidence 6788899886 5678899999999998665432100110 124555665555555555555555554
Q ss_pred ---------------eeCCCCCCcceEEEc-Cc-EEEeEeccCCCcc
Q 024241 221 ---------------ICLGCKSPDTILSKE-NR-LFFLRCEKCGSGR 250 (270)
Q Consensus 221 ---------------lC~~C~sPDT~L~ke-~r-l~~l~C~aCGa~~ 250 (270)
.|..|+.- +.+... ++ ..-..|..|++..
T Consensus 121 ~r~S~V~p~~~~~~f~C~~C~~~-~~v~~~~~~~~~P~~Cp~C~~~~ 166 (279)
T 1ltl_A 121 RKTDEIRPRIVKAVFECRGCMRH-HAVTQSTNMITEPSLCSECGGRS 166 (279)
T ss_dssp EEECCCEEEEEEEEEEETTTCCE-EEEECSSSSCCCCSCCTTTCCCC
T ss_pred EEecceEEEEEEEEEEcCCCCCE-EEEEecCCcccCCCcCCCCCCCC
Confidence 68899842 222222 22 1125788898764
No 93
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=28.90 E-value=28 Score=33.32 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=23.1
Q ss_pred EeeCCCCCC-cceEEEc-----C--cEEEeEeccCCCcccc
Q 024241 220 VICLGCKSP-DTILSKE-----N--RLFFLRCEKCGSGRSV 252 (270)
Q Consensus 220 VlC~~C~sP-DT~L~ke-----~--rl~~l~C~aCGa~~~V 252 (270)
.+|+.|+.. .|.|... + =++...|..||.+.+-
T Consensus 13 s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~e 53 (404)
T 2qkd_A 13 SLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTE 53 (404)
T ss_dssp EECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEE
T ss_pred ccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchhe
Confidence 689999954 4555532 2 3457899999998753
No 94
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=28.78 E-value=12 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=18.8
Q ss_pred ccceEeeCCCCCCcceEEEcCcEEEeEeccCCCcc
Q 024241 216 VNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGR 250 (270)
Q Consensus 216 I~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~ 250 (270)
.-..|.|+.|+.+ .+--..|..||.-+
T Consensus 27 ~p~l~~c~~cG~~--------~~pH~vc~~CG~Y~ 53 (60)
T 2zjr_Z 27 APNLTECPQCHGK--------KLSHHICPNCGYYD 53 (60)
T ss_dssp CCCCEECTTTCCE--------ECTTBCCTTTCBSS
T ss_pred CCCceECCCCCCE--------eCCceEcCCCCcCC
Confidence 3468999999987 12234689999654
No 95
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=28.01 E-value=13 Score=27.52 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=17.9
Q ss_pred cceEeeCCCCCCcceEEEcCcEEEeEeccCCCcc
Q 024241 217 NEYVICLGCKSPDTILSKENRLFFLRCEKCGSGR 250 (270)
Q Consensus 217 ~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~ 250 (270)
..++-||.|... ++.+.....+.|..||..-
T Consensus 23 ~~~~wCP~C~~~---~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 23 PKFLWCAQCSFG---FIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCEECCSSSCCC---EECCCSCSCEECTTTCCEE
T ss_pred CCEeECcCCCch---heecCCCCceEeCCCCCcc
Confidence 345569988763 2222223346788888643
No 96
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.31 E-value=18 Score=26.19 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=23.0
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCccccccc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~i 255 (270)
.-+|..|+.... |.. .--++|.-||++=-.+..
T Consensus 21 ~Y~C~~Cg~~~~-l~~---~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 21 IYLCADCGARNT-IQA---KEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp CCBCSSSCCBCC-CCS---SSCCCCSSSCCCCCBCCC
T ss_pred EEECCCCCCeee-cCC---CCceECCCCCcEEEEEec
Confidence 458999987654 322 236899999998766543
No 97
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=27.28 E-value=23 Score=26.04 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=22.0
Q ss_pred EeeCCCCCCcceEEEcCcEEEeEeccCCCcccccccccceEEEee
Q 024241 220 VICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVG 264 (270)
Q Consensus 220 VlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~ik~gf~a~~~ 264 (270)
.-|..|+. |+. --.|..||+..+.... .||++.+.
T Consensus 12 ~AC~~C~~----~~~-----~~~CPnC~s~~tS~~w-~G~ViI~d 46 (69)
T 1ryq_A 12 KACRHCHY----ITS-----EDRCPVCGSRDLSEEW-FDLVIIVD 46 (69)
T ss_dssp EEETTTCB----EES-----SSSCTTTCCCCEESCE-EEEEEESC
T ss_pred hhHHhCCc----ccc-----CCcCCCccCCccCCcc-ceEEEEeC
Confidence 56888887 442 2359999976533333 47777653
No 98
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=26.91 E-value=33 Score=24.34 Aligned_cols=26 Identities=31% Similarity=0.797 Sum_probs=19.3
Q ss_pred ceEeeCCCCCCcceEEEcCcEEEeEeccCCCc
Q 024241 218 EYVICLGCKSPDTILSKENRLFFLRCEKCGSG 249 (270)
Q Consensus 218 eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~ 249 (270)
+...|+.|+.++. ...++.|..|...
T Consensus 17 ~~~~C~~C~~~~~------~~~mi~CD~C~~w 42 (75)
T 2k16_A 17 QIWICPGCNKPDD------GSPMIGCDDCDDW 42 (75)
T ss_dssp EEECBTTTTBCCS------SCCEEECSSSSSE
T ss_pred CCcCCCCCCCCCC------CCCEEEcCCCCcc
Confidence 4578999999962 3357889999754
No 99
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=26.34 E-value=18 Score=27.98 Aligned_cols=30 Identities=27% Similarity=0.590 Sum_probs=17.7
Q ss_pred cceEeeCCCCCCcceEEEcCcEEEeEeccCCCcc
Q 024241 217 NEYVICLGCKSPDTILSKENRLFFLRCEKCGSGR 250 (270)
Q Consensus 217 ~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~ 250 (270)
+.|-.|+ |+.--|.| .|+=...|..||+..
T Consensus 46 KRFFkC~-C~~Rt~sl---~r~P~~~C~~Cg~~~ 75 (92)
T 2kwq_A 46 KRFFKCP-CGNRTISL---DRLPKKHCSTCGLFK 75 (92)
T ss_dssp CEEEECT-TSCEEEES---SSSCCSCCTTTCSCC
T ss_pred EEEEECC-CCCceeEe---eeCCCCCCCCCCCCc
Confidence 4466665 66665555 355555666666653
No 100
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=26.24 E-value=36 Score=30.89 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=21.8
Q ss_pred eEeeCCCCCCcceEEE-------------------cC--cEEEeEeccCCCccc
Q 024241 219 YVICLGCKSPDTILSK-------------------EN--RLFFLRCEKCGSGRS 251 (270)
Q Consensus 219 YVlC~~C~sPDT~L~k-------------------e~--rl~~l~C~aCGa~~~ 251 (270)
-..|+.|+++ ....- +. .+....|..||....
T Consensus 12 ~~~C~~Cg~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~ 64 (416)
T 4e2x_A 12 PTACRVCGGG-VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQL 64 (416)
T ss_dssp CEECTTTSCE-EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEE
T ss_pred CCcCCCCCCe-eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceee
Confidence 3579999999 54331 11 356788999996543
No 101
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=25.46 E-value=55 Score=25.90 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=26.0
Q ss_pred hccceEeeCCCCCCcceEEE------cC----cEEEeEeccCCCc
Q 024241 215 YVNEYVICLGCKSPDTILSK------EN----RLFFLRCEKCGSG 249 (270)
Q Consensus 215 YI~eYVlC~~C~sPDT~L~k------e~----rl~~l~C~aCGa~ 249 (270)
|+-.|+-|..|++-+-.++- +. =.|...|..|++.
T Consensus 22 yl~Nf~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~nC~Hv 66 (106)
T 2jox_A 22 FLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHV 66 (106)
T ss_dssp CTTTBCCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred eeeechhhhhcCCCceEEEeccccccCCCcEEEEEEEecCCCceE
Confidence 67789999999998855542 11 3567789999875
No 102
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=25.39 E-value=14 Score=26.38 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=16.8
Q ss_pred cceEeeCCCCCCcceEEEcCcEEEeEeccCCCc
Q 024241 217 NEYVICLGCKSPDTILSKENRLFFLRCEKCGSG 249 (270)
Q Consensus 217 ~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~ 249 (270)
-..|.|+.|+.+ ..- -..|..||.-
T Consensus 28 p~l~~c~~cGe~----~~~----H~vc~~CG~Y 52 (60)
T 3v2d_5 28 PTLVPCPECKAM----KPP----HTVCPECGYY 52 (60)
T ss_dssp CCCEECTTTCCE----ECT----TSCCTTTCEE
T ss_pred CceeECCCCCCe----ecc----eEEcCCCCcC
Confidence 457999999984 222 2349999854
No 103
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=24.44 E-value=23 Score=29.37 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=25.2
Q ss_pred HHHhcc-ceEeeCCCCCCcceEEEcCcEEEeEeccCCCccccc
Q 024241 212 LRRYVN-EYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 212 L~~YI~-eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~ 253 (270)
.+.|+- .+--||.|.|.-|.- ++- .+.|.-||..++-.
T Consensus 19 ~~g~~M~~lP~CP~C~seytYe--Dg~--l~vCPeC~hEW~~~ 57 (138)
T 2akl_A 19 FQGHMVSTLPPCPQCNSEYTYE--DGA--LLVCPECAHEWSPN 57 (138)
T ss_dssp ----CCCCSCCCTTTCCCCCEE--CSS--SEEETTTTEEECTT
T ss_pred ccccccccCCCCCCCCCcceEe--cCC--eEECCccccccCCc
Confidence 334444 468899999988753 333 47899999988643
No 104
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=24.34 E-value=24 Score=27.47 Aligned_cols=26 Identities=27% Similarity=0.698 Sum_probs=20.7
Q ss_pred cceEeeCCCCCCcceEEEcCcEEEeEeccCCC
Q 024241 217 NEYVICLGCKSPDTILSKENRLFFLRCEKCGS 248 (270)
Q Consensus 217 ~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa 248 (270)
+..++|.-|++---.|.+. .|.+||.
T Consensus 14 KtHtlCrRCG~~syH~qK~------~Ca~CGy 39 (94)
T 3iz5_l 14 KTHTLCVRCGRRSFHLQKS------TCSSCGY 39 (94)
T ss_dssp CSEEECTTTCSEEEEGGGT------EETTTCS
T ss_pred CccceecCcCchhhhcccc------cccccCC
Confidence 4679999999977555554 7999998
No 105
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.61 E-value=61 Score=19.32 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=18.9
Q ss_pred ehHHHHHHhCCChHHHHHHHH
Q 024241 162 NFMDLCKTMHRQPDHVMTFLL 182 (270)
Q Consensus 162 Nf~dI~k~L~R~p~hv~kyl~ 182 (270)
...+||+.|+.++..|.+|+.
T Consensus 23 s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHh
Confidence 478999999999999999985
No 106
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.63 E-value=60 Score=21.87 Aligned_cols=30 Identities=23% Similarity=0.598 Sum_probs=19.5
Q ss_pred EeeCCCCCC----cceEEEcCcEEE-----eEeccCCCc
Q 024241 220 VICLGCKSP----DTILSKENRLFF-----LRCEKCGSG 249 (270)
Q Consensus 220 VlC~~C~sP----DT~L~ke~rl~~-----l~C~aCGa~ 249 (270)
..|..|+.| +..|.-.++.|- .+|..|+..
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~ 41 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKC 41 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCB
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCc
Confidence 468999875 234445678887 566666543
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=22.58 E-value=90 Score=25.98 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=29.8
Q ss_pred eEEEEee---------cChHHHHHHHHHhccceEeeCCCCCCcceEEE--cC---------------cEEEeEeccCC
Q 024241 196 RLVVKGR---------FAPKNFEGILRRYVNEYVICLGCKSPDTILSK--EN---------------RLFFLRCEKCG 247 (270)
Q Consensus 196 rlii~G~---------f~~k~ie~~L~~YI~eYVlC~~C~sPDT~L~k--e~---------------rl~~l~C~aCG 247 (270)
.+|+.|. -....|-.+-+.-.+---+|+.|+.+-|--.+ ++ -.|.-.|..|=
T Consensus 110 ~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~~iC~~Cg~~a~~~~r~~~g~~~~~~~~~v~igg~~~Y~~~Cr~~~ 187 (191)
T 1xx6_A 110 RVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLINGKPAFYDDPVVLIGAMESYEARCRKCH 187 (191)
T ss_dssp EEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCEECTTTSSEECEEEEEETTEECCTTCCCC-----EEEEEECTTTC
T ss_pred EEEEEecccccccCcCccHHHHHHHcccEEeeeeEccccCCcceEEEEEcCCCccccCCCEEEECCcCcEEEcchHhh
Confidence 6777776 33444444333322333479889887554444 22 23777787774
No 108
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.56 E-value=51 Score=27.49 Aligned_cols=27 Identities=22% Similarity=0.451 Sum_probs=17.8
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCccc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSGRS 251 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~ 251 (270)
+-+|+.|+..-. +. .--.|..||+...
T Consensus 138 ~~~C~~CG~i~~-----~~-~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 138 VYICPICGYTAV-----DE-APEYCPVCGAPKE 164 (170)
T ss_dssp EEECTTTCCEEE-----SC-CCSBCTTTCCBGG
T ss_pred eeEeCCCCCeeC-----CC-CCCCCCCCCCCHH
Confidence 455999998532 11 1239999998654
No 109
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=22.49 E-value=32 Score=28.08 Aligned_cols=15 Identities=33% Similarity=0.793 Sum_probs=8.0
Q ss_pred cCcEEEeEeccCCCc
Q 024241 235 ENRLFFLRCEKCGSG 249 (270)
Q Consensus 235 e~rl~~l~C~aCGa~ 249 (270)
+++|...+|.+||+.
T Consensus 42 ~g~L~~~rC~~CG~~ 56 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRI 56 (145)
T ss_dssp TTCCEEEECTTTCCE
T ss_pred CCEEEEEEECCCCcE
Confidence 345555555555553
No 110
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=22.38 E-value=44 Score=30.66 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHhccc---eE---eeCCCCCCcceEEE------------cCcEEEeEeccCCCccccccc
Q 024241 204 APKNFEGILRRYVNE---YV---ICLGCKSPDTILSK------------ENRLFFLRCEKCGSGRSVAPI 255 (270)
Q Consensus 204 ~~k~ie~~L~~YI~e---YV---lC~~C~sPDT~L~k------------e~rl~~l~C~aCGa~~~V~~i 255 (270)
...-|+.+|+-|=.+ || -|+.|+++.+..-. -.++-.-.|..||+..-...+
T Consensus 60 ~~~~~~~ll~wFk~~fF~~~~~P~c~~C~~~~~~~g~~~~~~~~e~~~~a~~vE~y~c~~c~~~~~~pr~ 129 (295)
T 2f4m_A 60 EDFLLLELLHWFKEEFFRWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRY 129 (295)
T ss_dssp HHHHHHHHHHHHHHTTCEECSSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCEEeCCCCCcccCCcccccCCCCCCChhHhhcccchhheeeccccCceeecCCC
Confidence 455688888888554 55 49999987654210 247888999999987665433
No 111
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=21.23 E-value=75 Score=23.75 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=23.2
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 024241 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (270)
Q Consensus 162 Nf~dI~k~L~R~p~hv~kyl~~ELGt~ 188 (270)
++.+||..++-.+.||.+.|... |++
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk~~-G~s 50 (120)
T 3mkl_A 25 TLARIASELLMSPSLLKKKLREE-ETS 50 (120)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHT-TCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHc-CCC
Confidence 57899999999999999999886 874
No 112
>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
Probab=21.20 E-value=1.6e+02 Score=22.79 Aligned_cols=42 Identities=12% Similarity=0.269 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhhcCceeec-C----CceEEEEeecChHHHHHHHHHhc
Q 024241 174 PDHVMTFLLAELGTSGSLD-G----QQRLVVKGRFAPKNFEGILRRYV 216 (270)
Q Consensus 174 p~hv~kyl~~ELGt~gsid-~----~~rlii~G~f~~k~ie~~L~~YI 216 (270)
=++|.+||...||.+-+|. | +.++.|.| .++.++...|..++
T Consensus 53 N~ali~~LAk~l~s~V~i~~G~tsR~K~v~I~~-~~~~~l~~~L~~~~ 99 (104)
T 1jrm_A 53 NREIIKEFSETFGRDVEIVSGQKSRQKTIRIQG-MGRDLFLKLVSEKF 99 (104)
T ss_dssp HHHHHHHHHHHHSSEEEECSCGGGSEEEEEEES-CCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCCceEEEEcC-CCHHHHHHHHHHHh
Confidence 3699999999999555554 3 24577776 57888999988775
No 113
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=20.41 E-value=39 Score=25.61 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=20.9
Q ss_pred eEeeCCCCCCcceEEEcCcEEEeEeccCCCccccc
Q 024241 219 YVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVA 253 (270)
Q Consensus 219 YVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~ 253 (270)
-|.|+.|+..+ .+-...----..|..||+.-+-.
T Consensus 5 ~~~c~~c~~~n-~~p~~~~~~~~~~~~~~~~~~~~ 38 (148)
T 3p2a_A 5 NTVCTACMATN-RLPEERIDDGAKCGRCGHSLFDG 38 (148)
T ss_dssp EEECTTTCCEE-EEESSCSCSCCBCTTTCCBTTCC
T ss_pred EEECccccccc-CCCCcccccCCcchhcCCccccC
Confidence 47799999974 33332222245688998865543
No 114
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.33 E-value=81 Score=19.87 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=22.0
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcC
Q 024241 162 NFMDLCKTMHRQPDHVMTFLLAELGT 187 (270)
Q Consensus 162 Nf~dI~k~L~R~p~hv~kyl~~ELGt 187 (270)
+..++|+.|+.++..|+.+|. ++|.
T Consensus 4 rv~~lAkel~~~~k~l~~~l~-~~g~ 28 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFA-DAGI 28 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHH-HHTS
T ss_pred cHHHHHHHHCcCHHHHHHHHH-HcCC
Confidence 467999999999999999985 6887
No 115
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=20.10 E-value=59 Score=27.64 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=24.7
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 024241 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (270)
Q Consensus 162 Nf~dI~k~L~R~p~hv~kyl~~ELGt~ 188 (270)
++.++|+.++-++.||.++|..++|.+
T Consensus 21 ~~~~la~~~~~s~~~l~r~f~~~~g~s 47 (292)
T 1d5y_A 21 SLDNVAAKAGYSKWHLQRMFKDVTGHA 47 (292)
T ss_dssp CCHHHHTTTSSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 478999999999999999999999974
Done!