BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024242
         (270 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 56  TPRKLVECRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112
           TP     CRIC  E D +S + TPC C GSL + H+ C+Q+W        CE+C+ +F
Sbjct: 11  TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 33.1 bits (74), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 63  CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 108
           C IC +E  +      C C G L+  HR C+  W     NT C+IC
Sbjct: 9   CWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQIC 53


>pdb|4A2R|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.5-5
          Length = 258

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 13/74 (17%)

Query: 1   MGDHFVLLVDRLLTESTLEAAIQESRNRSMQATPLAVDDSKADYS-----------SPNV 49
           +G   VLL+ ++LTE  LE+ ++ +R+  M+   L  D++  D +           S N 
Sbjct: 125 LGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFISIFSMNF 184

Query: 50  EFGDISTP--RKLV 61
           E G+I+    RKL+
Sbjct: 185 ETGEINKENQRKLI 198


>pdb|4A2S|A Chain A, Structure Of The Engineered Retro-aldolase Ra95.5
          Length = 258

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 13/74 (17%)

Query: 1   MGDHFVLLVDRLLTESTLEAAIQESRNRSMQATPLAVDDSKADYS-----------SPNV 49
           +G   VLL+ ++LTE  LE+ ++ +R+  M+   L  D++  D +           S N 
Sbjct: 125 LGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIGIFSMNF 184

Query: 50  EFGDISTP--RKLV 61
           E G+I+    RKL+
Sbjct: 185 ETGEINKENQRKLI 198


>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
           Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
           Northeast Structural Genomics Consortium (Nesg) Target
           Hr4710b
          Length = 91

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 63  CRICQDE--DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114
           C IC  E    D   E PC       Y H+ CV  W  + G  TC +C+  F P
Sbjct: 43  CPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKSG--TCPVCRCMFPP 89


>pdb|4A29|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.0
          Length = 258

 Score = 28.1 bits (61), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 26/43 (60%)

Query: 1   MGDHFVLLVDRLLTESTLEAAIQESRNRSMQATPLAVDDSKAD 43
           +G   VLL+ ++LTE  LE+ ++ +R+  M+   L  D++  D
Sbjct: 125 LGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD 167


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,059,021
Number of Sequences: 62578
Number of extensions: 268618
Number of successful extensions: 614
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 9
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)