Query 024242
Match_columns 270
No_of_seqs 243 out of 785
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12428 DUF3675: Protein of u 100.0 1.6E-41 3.6E-46 279.5 6.9 116 114-230 1-118 (118)
2 KOG1609 Protein involved in mR 99.8 1.4E-19 3.1E-24 164.6 2.1 188 52-240 70-267 (323)
3 PHA02825 LAP/PHD finger-like p 99.8 5.7E-19 1.2E-23 152.0 4.9 58 57-116 5-62 (162)
4 PHA02862 5L protein; Provision 99.7 1.8E-17 3.9E-22 141.0 3.8 53 60-114 2-54 (156)
5 smart00744 RINGv The RING-vari 99.7 2.4E-17 5.3E-22 116.6 3.0 48 62-109 1-49 (49)
6 PF12906 RINGv: RING-variant d 99.6 4.6E-17 9.9E-22 114.3 1.3 46 63-108 1-47 (47)
7 COG5183 SSM4 Protein involved 99.6 1.8E-15 3.9E-20 155.0 4.9 63 60-122 12-77 (1175)
8 KOG3053 Uncharacterized conser 99.5 2.7E-14 5.8E-19 131.3 4.0 65 57-121 17-90 (293)
9 PF13639 zf-RING_2: Ring finge 97.5 3.2E-05 6.9E-10 52.5 0.6 41 62-109 2-44 (44)
10 KOG4628 Predicted E3 ubiquitin 97.2 0.00039 8.5E-09 67.2 4.4 48 61-114 230-279 (348)
11 COG5540 RING-finger-containing 97.1 0.0004 8.7E-09 66.3 3.4 49 58-113 321-372 (374)
12 PLN03208 E3 ubiquitin-protein 96.9 0.00086 1.9E-08 60.2 4.0 50 58-113 16-79 (193)
13 cd00162 RING RING-finger (Real 96.9 0.00074 1.6E-08 43.7 2.6 44 62-111 1-44 (45)
14 PHA02929 N1R/p28-like protein; 96.9 0.00069 1.5E-08 62.4 3.1 48 59-113 173-227 (238)
15 COG5243 HRD1 HRD ubiquitin lig 96.4 0.0041 8.8E-08 61.0 5.0 48 58-112 285-344 (491)
16 PF12678 zf-rbx1: RING-H2 zinc 96.3 0.0023 5E-08 48.5 2.0 42 61-109 20-73 (73)
17 PF00097 zf-C3HC4: Zinc finger 96.2 0.0026 5.7E-08 42.0 1.7 41 63-108 1-41 (41)
18 smart00184 RING Ring finger. E 96.2 0.0047 1E-07 38.4 2.6 39 63-108 1-39 (39)
19 PF13920 zf-C3HC4_3: Zinc fing 96.1 0.0032 7E-08 43.8 1.6 45 61-113 3-48 (50)
20 KOG0317 Predicted E3 ubiquitin 96.0 0.015 3.3E-07 55.0 6.4 55 53-115 232-286 (293)
21 PF11793 FANCL_C: FANCL C-term 95.9 0.0029 6.2E-08 47.7 0.7 52 60-114 2-67 (70)
22 PF12861 zf-Apc11: Anaphase-pr 95.8 0.0072 1.6E-07 47.9 2.5 51 60-114 21-83 (85)
23 KOG0802 E3 ubiquitin ligase [P 95.6 0.0087 1.9E-07 60.5 2.9 47 59-112 290-340 (543)
24 PHA02926 zinc finger-like prot 95.4 0.014 3E-07 53.9 3.4 60 57-123 167-238 (242)
25 PF13923 zf-C3HC4_2: Zinc fing 94.1 0.022 4.8E-07 37.7 0.9 38 63-108 1-39 (39)
26 KOG0828 Predicted E3 ubiquitin 94.0 0.044 9.5E-07 55.6 3.3 55 53-113 564-634 (636)
27 smart00504 Ubox Modified RING 94.0 0.064 1.4E-06 38.1 3.2 45 61-113 2-46 (63)
28 COG5219 Uncharacterized conser 93.3 0.024 5.2E-07 61.2 -0.0 53 58-113 1467-1523(1525)
29 KOG0823 Predicted E3 ubiquitin 91.2 0.29 6.3E-06 45.2 4.3 51 56-112 43-94 (230)
30 PF14634 zf-RING_5: zinc-RING 91.1 0.16 3.5E-06 34.5 2.0 42 62-110 1-44 (44)
31 KOG0827 Predicted E3 ubiquitin 90.6 0.21 4.5E-06 49.6 3.0 45 60-109 4-52 (465)
32 KOG1493 Anaphase-promoting com 90.5 0.09 1.9E-06 41.3 0.3 49 62-114 22-82 (84)
33 TIGR00599 rad18 DNA repair pro 90.3 0.2 4.4E-06 49.5 2.6 49 58-114 24-72 (397)
34 COG5194 APC11 Component of SCF 89.0 0.24 5.1E-06 39.3 1.7 27 86-114 56-82 (88)
35 KOG0804 Cytoplasmic Zn-finger 87.0 0.22 4.7E-06 50.1 0.4 48 57-113 172-222 (493)
36 PF05883 Baculo_RING: Baculovi 86.2 0.3 6.6E-06 41.7 0.8 43 58-100 24-69 (134)
37 PLN02189 cellulose synthase 84.6 0.64 1.4E-05 50.9 2.5 51 59-113 33-87 (1040)
38 KOG1785 Tyrosine kinase negati 84.4 0.38 8.2E-06 48.1 0.7 48 60-113 369-416 (563)
39 PF05290 Baculo_IE-1: Baculovi 83.8 0.82 1.8E-05 39.3 2.3 55 59-114 79-133 (140)
40 PLN02436 cellulose synthase A 81.7 0.98 2.1E-05 49.7 2.5 51 59-113 35-89 (1094)
41 KOG0825 PHD Zn-finger protein 81.2 1.5 3.3E-05 47.2 3.6 31 76-113 141-171 (1134)
42 KOG4265 Predicted E3 ubiquitin 81.0 2.2 4.7E-05 41.8 4.4 50 57-113 287-336 (349)
43 PF14570 zf-RING_4: RING/Ubox 80.6 1.3 2.9E-05 31.6 2.1 45 63-113 1-48 (48)
44 KOG2930 SCF ubiquitin ligase, 78.2 1.5 3.2E-05 36.3 2.0 26 86-113 83-108 (114)
45 PF06210 DUF1003: Protein of u 76.8 15 0.00032 30.2 7.4 48 179-226 5-55 (108)
46 PF15227 zf-C3HC4_4: zinc fing 73.7 1.6 3.5E-05 29.7 0.9 40 63-108 1-42 (42)
47 PF13445 zf-RING_UBOX: RING-ty 70.4 2.2 4.8E-05 29.4 1.0 39 63-106 1-43 (43)
48 KOG4445 Uncharacterized conser 69.5 2.5 5.5E-05 40.9 1.5 50 60-114 115-187 (368)
49 PLN02638 cellulose synthase A 69.0 5.6 0.00012 44.1 4.1 52 59-113 16-70 (1079)
50 PF04564 U-box: U-box domain; 67.9 2.9 6.3E-05 31.3 1.3 47 61-114 5-51 (73)
51 KOG2177 Predicted E3 ubiquitin 67.5 2.6 5.6E-05 36.1 1.0 45 58-110 11-55 (386)
52 KOG1645 RING-finger-containing 65.1 5.2 0.00011 40.1 2.7 49 60-112 4-55 (463)
53 TIGR00570 cdk7 CDK-activating 65.0 6.4 0.00014 38.0 3.2 49 61-115 4-56 (309)
54 KOG1734 Predicted RING-contain 62.5 2.9 6.2E-05 40.0 0.4 51 58-113 222-281 (328)
55 COG5432 RAD18 RING-finger-cont 62.1 3.6 7.7E-05 39.9 1.0 47 59-113 24-70 (391)
56 PLN02195 cellulose synthase A 60.7 7.6 0.00016 42.7 3.2 52 59-113 5-59 (977)
57 PLN02400 cellulose synthase 57.9 7.8 0.00017 43.0 2.7 52 59-113 35-89 (1085)
58 COG4420 Predicted membrane pro 57.8 29 0.00063 31.5 5.9 48 179-226 59-110 (191)
59 KOG1002 Nucleotide excision re 57.7 6.9 0.00015 40.7 2.1 56 58-119 534-592 (791)
60 PF14569 zf-UDP: Zinc-binding 56.6 12 0.00027 29.5 2.9 53 59-114 8-63 (80)
61 PF10367 Vps39_2: Vacuolar sor 55.8 4.1 8.9E-05 31.4 0.2 31 60-95 78-109 (109)
62 PF08746 zf-RING-like: RING-li 54.2 7.1 0.00015 26.8 1.1 22 87-108 22-43 (43)
63 PF12273 RCR: Chitin synthesis 54.0 12 0.00026 30.9 2.7 22 218-239 8-29 (130)
64 KOG0287 Postreplication repair 53.1 5.1 0.00011 39.6 0.4 47 59-113 22-68 (442)
65 KOG0320 Predicted E3 ubiquitin 53.1 21 0.00045 32.2 4.2 51 55-112 126-177 (187)
66 PLN02915 cellulose synthase A 52.1 14 0.0003 41.0 3.5 53 58-113 13-68 (1044)
67 PF10272 Tmpp129: Putative tra 51.7 16 0.00034 36.0 3.4 36 75-113 305-351 (358)
68 KOG3970 Predicted E3 ubiquitin 45.2 41 0.00089 31.7 4.9 50 58-112 48-104 (299)
69 KOG1039 Predicted E3 ubiquitin 44.5 17 0.00036 35.6 2.4 50 58-112 159-220 (344)
70 PF05191 ADK_lid: Adenylate ki 42.7 11 0.00023 25.2 0.5 19 103-121 2-20 (36)
71 KOG2164 Predicted E3 ubiquitin 42.1 22 0.00048 36.5 3.0 49 60-114 186-237 (513)
72 KOG1941 Acetylcholine receptor 42.0 12 0.00027 37.6 1.1 47 59-110 364-413 (518)
73 KOG1952 Transcription factor N 41.8 22 0.00048 38.8 3.0 53 57-113 188-247 (950)
74 COG5574 PEX10 RING-finger-cont 41.1 30 0.00065 32.9 3.4 51 57-114 212-263 (271)
75 KOG2927 Membrane component of 40.7 59 0.0013 32.2 5.5 41 153-196 168-209 (372)
76 smart00249 PHD PHD zinc finger 40.2 8.8 0.00019 24.6 -0.1 29 63-94 2-30 (47)
77 KOG1428 Inhibitor of type V ad 35.3 36 0.00079 39.9 3.4 55 56-113 3482-3544(3738)
78 PF05568 ASFV_J13L: African sw 34.1 1E+02 0.0022 27.3 5.4 28 211-238 31-58 (189)
79 PF09788 Tmemb_55A: Transmembr 33.2 41 0.00089 31.8 3.0 64 167-230 184-249 (256)
80 cd00730 rubredoxin Rubredoxin; 32.3 31 0.00068 24.6 1.6 15 103-117 2-16 (50)
81 COG4846 CcdC Membrane protein 32.1 61 0.0013 28.3 3.6 43 181-224 97-140 (163)
82 COG2322 Predicted membrane pro 31.5 1.1E+02 0.0024 27.4 5.3 55 178-232 83-144 (177)
83 COG5175 MOT2 Transcriptional r 31.4 44 0.00096 33.3 3.0 48 60-113 14-64 (480)
84 PF06679 DUF1180: Protein of u 31.4 49 0.0011 29.2 3.0 14 220-233 108-121 (163)
85 KOG3899 Uncharacterized conser 31.3 31 0.00068 33.6 1.9 27 87-113 328-365 (381)
86 PF11874 DUF3394: Domain of un 30.8 33 0.00071 30.8 1.9 21 219-239 162-182 (183)
87 PF13894 zf-C2H2_4: C2H2-type 29.8 21 0.00045 19.7 0.3 11 104-114 2-12 (24)
88 KOG0956 PHD finger protein AF1 29.7 26 0.00057 37.6 1.2 56 58-113 115-182 (900)
89 KOG0824 Predicted E3 ubiquitin 28.1 61 0.0013 31.6 3.3 50 58-116 5-56 (324)
90 PF10571 UPF0547: Uncharacteri 27.8 29 0.00063 21.6 0.8 13 101-113 13-25 (26)
91 PF04532 DUF587: Protein of un 27.2 21 0.00046 32.7 0.1 26 66-91 93-121 (215)
92 PF07800 DUF1644: Protein of u 27.0 79 0.0017 28.0 3.5 39 60-100 2-49 (162)
93 COG5416 Uncharacterized integr 26.3 3.7E+02 0.0079 22.1 7.4 61 174-236 26-89 (98)
94 PRK13718 conjugal transfer pro 24.9 1.4E+02 0.003 23.8 4.1 19 215-233 53-71 (84)
95 KOG0802 E3 ubiquitin ligase [P 24.8 44 0.00094 34.1 1.8 45 58-114 477-521 (543)
96 PF00096 zf-C2H2: Zinc finger, 24.0 29 0.00062 19.7 0.2 11 104-114 2-12 (23)
97 PF04423 Rad50_zn_hook: Rad50 23.8 53 0.0012 23.0 1.6 23 92-114 8-32 (54)
98 PRK10263 DNA translocase FtsK; 23.5 1.6E+02 0.0034 34.1 5.8 23 211-233 77-99 (1355)
99 PRK10747 putative protoheme IX 23.3 2.3E+02 0.005 27.3 6.3 9 222-230 55-63 (398)
100 COG5236 Uncharacterized conser 22.4 1.2E+02 0.0027 30.3 4.3 51 58-114 59-109 (493)
101 PHA03375 hypothetical protein; 22.4 30 0.00064 37.2 0.1 26 66-91 99-127 (844)
102 PF05210 Sprouty: Sprouty prot 22.2 62 0.0013 26.8 1.9 19 76-99 59-77 (108)
103 PF04641 Rtf2: Rtf2 RING-finge 22.1 82 0.0018 29.1 2.9 49 58-114 111-162 (260)
104 PF03854 zf-P11: P-11 zinc fin 21.3 42 0.00091 24.3 0.6 27 85-113 20-46 (50)
105 KOG1607 Protein transporter of 20.2 6.2E+02 0.013 24.7 8.5 34 203-236 256-289 (318)
No 1
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=100.00 E-value=1.6e-41 Score=279.45 Aligned_cols=116 Identities=57% Similarity=1.090 Sum_probs=113.1
Q ss_pred ccccCCCCccccccccccccCCcccccccccCCceE-EEeccccccCCCccchhhccCCcchhHHHHHHHHHHHHHHHHh
Q 024242 114 PGYTAPPPLFQFGNIPMNFRGNWEISRRELNNPRII-MVAADHSFLQSPTYEEYSASNTRSMICCRSIALIFVFLLILRH 192 (270)
Q Consensus 114 ~~yt~p~~~~~~~~~~i~~r~~~~i~~~dl~~~~~~-~~~a~~~~~~~~~y~~~~~~~~~~~~~CR~~aiif~~lLllrh 192 (270)
|+||+|+|+++.++++++||++|+++++|+++++++ |++++++++++ +|++|+.+|.+|++|||++|||||+||||||
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~~d~~~~~~~a~~~ae~~~l~~-~y~e~~~~~~~~a~~CRsvAli~m~LLllRh 79 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISRRDLRDPRFLAMAAAERQFLES-EYDEYAASNTRGAACCRSVALIFMVLLLLRH 79 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCccccccCccchhhhhhhhhhhhcccc-ccccccccCCCceeHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999 99999999999 4999999999999999999999999999999
Q ss_pred hhceeecCCCCCchHHHH-HHHHHhhhhHHHHHHHHHHH
Q 024242 193 TLPVILSRTNDYSFPIFL-LFLRTAGIVLPIYVMVKAVT 230 (270)
Q Consensus 193 ~l~l~~~~~~~~s~~lf~-~~Lr~agillP~yi~~~a~~ 230 (270)
+++++++|+++|+|++|| ++||+||||||||||+|+++
T Consensus 80 al~l~~~~~~~~s~~lftl~~LRaaGilLP~Yim~rais 118 (118)
T PF12428_consen 80 ALALVTGGAEDYSFTLFTLLLLRAAGILLPCYIMARAIS 118 (118)
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999 99999999999999999974
No 2
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.76 E-value=1.4e-19 Score=164.61 Aligned_cols=188 Identities=26% Similarity=0.373 Sum_probs=136.2
Q ss_pred CCCCCCCCCCeeeEeccCCCCC---CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccccCCCCccccccc
Q 024242 52 GDISTPRKLVECRICQDEDADS---NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPLFQFGNI 128 (270)
Q Consensus 52 ~~~~~~~~~~~CRIC~e~~~~~---~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~yt~p~~~~~~~~~ 128 (270)
+..+.+.....||||+++.++. .++.||.|+|+++|||+.|+++|+..|++..||+|++.|.+.++.+.+...+...
T Consensus 70 ~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~ 149 (323)
T KOG1609|consen 70 SLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKV 149 (323)
T ss_pred ccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhh
Confidence 3445556679999999986533 6999999999999999999999999999999999999999998888887766665
Q ss_pred cccccCCcccccc-cccCCceE-EEeccccccCCCccchhhccCCcchhHHHHHH-HHHHHHHHHHhhhceeec--C-CC
Q 024242 129 PMNFRGNWEISRR-ELNNPRII-MVAADHSFLQSPTYEEYSASNTRSMICCRSIA-LIFVFLLILRHTLPVILS--R-TN 202 (270)
Q Consensus 129 ~i~~r~~~~i~~~-dl~~~~~~-~~~a~~~~~~~~~y~~~~~~~~~~~~~CR~~a-iif~~lLllrh~l~l~~~--~-~~ 202 (270)
+....+.|..... .+.....+ +..+.+.++.. .++++.......+..+++.. ..+.++.+.++.+..... + ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (323)
T KOG1609|consen 150 RSGALSERTLSGMILLKVALLVAIIVSVLPLLLG-LLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIF 228 (323)
T ss_pred hhHhhhheeeehhhhhhhhhhheeeEEeehhhhh-hhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHH
Confidence 5544444544432 34444444 44455656555 36666666666667778777 777778788887776432 1 12
Q ss_pred CCchHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q 024242 203 DYSFPIFL-LFLRTAGIVLPIYVMVKAVTALQRHRYQQV 240 (270)
Q Consensus 203 ~~s~~lf~-~~Lr~agillP~yi~~~a~~~~q~~r~~~~ 240 (270)
.+....+. .++|+.++.++.+++++++-..|.++.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (323)
T KOG1609|consen 229 ILKSLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLV 267 (323)
T ss_pred HHHHHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcce
Confidence 33334444 889999999999999866777777776653
No 3
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.75 E-value=5.7e-19 Score=152.03 Aligned_cols=58 Identities=28% Similarity=0.642 Sum_probs=52.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccc
Q 024242 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGY 116 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~y 116 (270)
+...+.||||+++++ .+.+||+|+||+||||++||++|++.+++..||+|+++|....
T Consensus 5 s~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 456789999998864 4679999999999999999999999999999999999998663
No 4
>PHA02862 5L protein; Provisional
Probab=99.68 E-value=1.8e-17 Score=141.02 Aligned_cols=53 Identities=26% Similarity=0.679 Sum_probs=48.4
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 60 ~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
...||||++++++. .+||+|+||+||||++||++|++.+++..||+|+++|..
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 35899999997544 699999999999999999999999999999999999964
No 5
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.67 E-value=2.4e-17 Score=116.59 Aligned_cols=48 Identities=58% Similarity=1.318 Sum_probs=43.9
Q ss_pred eeeEeccC-CCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccc
Q 024242 62 ECRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQ 109 (270)
Q Consensus 62 ~CRIC~e~-~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk 109 (270)
+||||+++ +++++++.||+|+|+++|||++||++|++++++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 59999984 3456899999999999999999999999999999999996
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.64 E-value=4.6e-17 Score=114.27 Aligned_cols=46 Identities=50% Similarity=1.279 Sum_probs=37.7
Q ss_pred eeEeccCCCC-CCcccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 024242 63 CRICQDEDAD-SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 108 (270)
Q Consensus 63 CRIC~e~~~~-~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEIC 108 (270)
||||++++++ ++|++||.|+||++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 8999998754 469999999999999999999999999999999998
No 7
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.56 E-value=1.8e-15 Score=155.00 Aligned_cols=63 Identities=40% Similarity=0.950 Sum_probs=57.3
Q ss_pred CCeeeEeccCC-CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc--cccccCCCCc
Q 024242 60 LVECRICQDED-ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF--KPGYTAPPPL 122 (270)
Q Consensus 60 ~~~CRIC~e~~-~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y--~~~yt~p~~~ 122 (270)
...||||+.++ .+++|.+||+|+||+||+|++||..|...+++.+|+|||++| +.+|+..+|.
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~ 77 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQ 77 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCc
Confidence 37899999887 678999999999999999999999999999999999999986 5778887773
No 8
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2.7e-14 Score=131.30 Aligned_cols=65 Identities=31% Similarity=0.725 Sum_probs=55.8
Q ss_pred CCCCCeeeEeccCCCCC---CcccccccCCCCccccHHHHHHHHHHhC------CcccccccccccccccCCCC
Q 024242 57 PRKLVECRICQDEDADS---NMETPCSCCGSLKYAHRRCVQRWCNEKG------NTTCEICQQQFKPGYTAPPP 121 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~---~L~~PC~C~GSlk~vH~~CL~rWi~~kg------~~~CEICk~~y~~~yt~p~~ 121 (270)
.+.++.||||+..++|+ .+++||.|+|+.||||+.||.+|+.+|. ...|..|+.+|...|+..-|
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~ 90 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGP 90 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccCh
Confidence 34568999999998875 4899999999999999999999999974 57999999999987765433
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.49 E-value=3.2e-05 Score=52.49 Aligned_cols=41 Identities=32% Similarity=0.970 Sum_probs=31.7
Q ss_pred eeeEeccCCC--CCCcccccccCCCCccccHHHHHHHHHHhCCccccccc
Q 024242 62 ECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQ 109 (270)
Q Consensus 62 ~CRIC~e~~~--~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk 109 (270)
.|-||+++.. +.....||. +..|.+|+++|++.++ +|++|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhCC--cCCccC
Confidence 6899999853 334566653 8999999999998864 999995
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00039 Score=67.19 Aligned_cols=48 Identities=25% Similarity=0.708 Sum_probs=40.2
Q ss_pred CeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 61 VECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 61 ~~CRIC~e~~~~~--~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
..|-||+|+..++ --+.||+ +..|..|+..|+... ...|++||+.-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 7999999997544 3479998 789999999999987 4679999997543
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0004 Score=66.30 Aligned_cols=49 Identities=31% Similarity=0.657 Sum_probs=40.2
Q ss_pred CCCCeeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHH-HhCCccccccccccc
Q 024242 58 RKLVECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCN-EKGNTTCEICQQQFK 113 (270)
Q Consensus 58 ~~~~~CRIC~e~~--~~~~L~~PC~C~GSlk~vH~~CL~rWi~-~kg~~~CEICk~~y~ 113 (270)
...++|-||.+.. .+..++.||+ +-.|..|+.+|+. .|. .|+.|+.+..
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~~--~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYSN--KCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhcc--cCCccCCCCC
Confidence 4459999998875 3446899998 7899999999998 555 8999998764
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.94 E-value=0.00086 Score=60.17 Aligned_cols=50 Identities=20% Similarity=0.611 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--------------hCCccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--------------KGNTTCEICQQQFK 113 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--------------kg~~~CEICk~~y~ 113 (270)
++...|-||++... .+.+++|. +.....||.+|+.. ++...|++|+..+.
T Consensus 16 ~~~~~CpICld~~~-dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVR-DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCC-CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 45689999998764 46778876 78999999999863 23568999999874
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.92 E-value=0.00074 Score=43.69 Aligned_cols=44 Identities=32% Similarity=0.882 Sum_probs=33.4
Q ss_pred eeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccc
Q 024242 62 ECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQ 111 (270)
Q Consensus 62 ~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~ 111 (270)
.|-||++...+.....||. +.+|..|+.+|++. +...|++|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4789988764333455675 57999999999987 56789999875
No 14
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.90 E-value=0.00069 Score=62.44 Aligned_cols=48 Identities=31% Similarity=0.726 Sum_probs=36.8
Q ss_pred CCCeeeEeccCCCCCC-------cccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDEDADSN-------METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~-------L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
...+|-||++...+.+ ...||. +..|..|+.+|+..+ .+|++|+.+|.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~--~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK--NTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC--CCCCCCCCEee
Confidence 4579999999743321 345665 789999999999754 48999999885
No 15
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0041 Score=61.05 Aligned_cols=48 Identities=31% Similarity=0.783 Sum_probs=38.1
Q ss_pred CCCCeeeEeccCC--CC----------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024242 58 RKLVECRICQDED--AD----------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (270)
Q Consensus 58 ~~~~~CRIC~e~~--~~----------~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (270)
+....|-||.++. .+ .|-..||. +..|..||+.|+..++ +|+||+.+.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCcc
Confidence 4567999999883 11 13467887 7899999999998876 899999884
No 16
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.31 E-value=0.0023 Score=48.46 Aligned_cols=42 Identities=29% Similarity=0.846 Sum_probs=29.6
Q ss_pred CeeeEeccCCCC-----------CC-cccccccCCCCccccHHHHHHHHHHhCCccccccc
Q 024242 61 VECRICQDEDAD-----------SN-METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQ 109 (270)
Q Consensus 61 ~~CRIC~e~~~~-----------~~-L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk 109 (270)
..|-||++...+ -+ ...+|+ +..|..||.+|++.+. .|++|+
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 359999887521 11 234554 7899999999997665 999996
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.21 E-value=0.0026 Score=42.03 Aligned_cols=41 Identities=29% Similarity=0.873 Sum_probs=34.7
Q ss_pred eeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 024242 63 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 108 (270)
Q Consensus 63 CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEIC 108 (270)
|.||++...+.....||. +.+...|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 778988776544589987 78999999999998888899987
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.17 E-value=0.0047 Score=38.37 Aligned_cols=39 Identities=38% Similarity=0.997 Sum_probs=30.1
Q ss_pred eeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 024242 63 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 108 (270)
Q Consensus 63 CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEIC 108 (270)
|.||++.. ......||. +..|..|+.+|++ ++...|++|
T Consensus 1 C~iC~~~~-~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC-CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67888773 356678876 5689999999998 556678876
No 19
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.06 E-value=0.0032 Score=43.75 Aligned_cols=45 Identities=27% Similarity=0.666 Sum_probs=35.7
Q ss_pred CeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCccccccccccc
Q 024242 61 VECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 61 ~~CRIC~e~~~~~~L~~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
..|.||++... .....||. +. +-..|+.+|.+ +...|++|+++++
T Consensus 3 ~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPR-DVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBS-SEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred CCCccCCccCC-ceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 57999998754 36788997 45 89999999999 6679999998875
No 20
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.015 Score=55.02 Aligned_cols=55 Identities=29% Similarity=0.839 Sum_probs=45.0
Q ss_pred CCCCCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024242 53 DISTPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (270)
Q Consensus 53 ~~~~~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (270)
+.+.+.....|-+|++.-. ++-.+||. +..=-.|++.|+++|. .|++|+.+|+|.
T Consensus 232 ~~~i~~a~~kC~LCLe~~~-~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~ps 286 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRS-NPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQPS 286 (293)
T ss_pred CccCCCCCCceEEEecCCC-CCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCCc
Confidence 4455677799999998864 36789998 6777899999999987 499999999763
No 21
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.88 E-value=0.0029 Score=47.74 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=25.1
Q ss_pred CCeeeEeccCCC-C-CC---cccccccCCCCccccHHHHHHHHHHhC---------Ccccccccccccc
Q 024242 60 LVECRICQDEDA-D-SN---METPCSCCGSLKYAHRRCVQRWCNEKG---------NTTCEICQQQFKP 114 (270)
Q Consensus 60 ~~~CRIC~e~~~-~-~~---L~~PC~C~GSlk~vH~~CL~rWi~~kg---------~~~CEICk~~y~~ 114 (270)
...|.||++... + .. +-....|. +..|..||.+|+.... .-.|+.|+.+.+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 458999987642 2 11 23335674 7899999999998631 1369999988764
No 22
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.76 E-value=0.0072 Score=47.86 Aligned_cols=51 Identities=24% Similarity=0.553 Sum_probs=35.9
Q ss_pred CCeeeEeccCCC-----------CCCcccccccCCCCccccHHHHHHHHHHh-CCcccccccccccc
Q 024242 60 LVECRICQDEDA-----------DSNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEICQQQFKP 114 (270)
Q Consensus 60 ~~~CRIC~e~~~-----------~~~L~~PC~C~GSlk~vH~~CL~rWi~~k-g~~~CEICk~~y~~ 114 (270)
...|-||+...+ +-+++ =+.|+ +.+|..||.+|++.. .+..|++|+++|+.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 346777776542 11221 24563 789999999999974 46799999999864
No 23
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0087 Score=60.52 Aligned_cols=47 Identities=26% Similarity=0.656 Sum_probs=39.0
Q ss_pred CCCeeeEeccCCCCC----CcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024242 59 KLVECRICQDEDADS----NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~----~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (270)
....|.||.|+.... +-..||. +..|..||++|++.+. +|++|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~q--tCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQQ--TCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHhC--cCCcchhhh
Confidence 467999999986443 6678887 7999999999999855 999999954
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=95.43 E-value=0.014 Score=53.86 Aligned_cols=60 Identities=22% Similarity=0.582 Sum_probs=43.0
Q ss_pred CCCCCeeeEeccCCC------CC--CcccccccCCCCccccHHHHHHHHHHh----CCcccccccccccccccCCCCcc
Q 024242 57 PRKLVECRICQDEDA------DS--NMETPCSCCGSLKYAHRRCVQRWCNEK----GNTTCEICQQQFKPGYTAPPPLF 123 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~------~~--~L~~PC~C~GSlk~vH~~CL~rWi~~k----g~~~CEICk~~y~~~yt~p~~~~ 123 (270)
.+...+|-||+|.-- +. .+..+|. +.....|+.+|.+.+ ....|++|+..|. +..|.+.|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pSrf~ 238 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMSKFY 238 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccccce
Confidence 355689999998732 11 3566776 789999999999864 2467999999986 33454443
No 25
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=94.10 E-value=0.022 Score=37.68 Aligned_cols=38 Identities=34% Similarity=0.922 Sum_probs=29.1
Q ss_pred eeEeccCCCCCC-cccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 024242 63 CRICQDEDADSN-METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 108 (270)
Q Consensus 63 CRIC~e~~~~~~-L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEIC 108 (270)
|-||++...+ + ...||. +...++|+++|++. +.+|++|
T Consensus 1 C~iC~~~~~~-~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-EEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC-cCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 6789877655 5 578887 78999999999988 3689887
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.044 Score=55.60 Aligned_cols=55 Identities=25% Similarity=0.593 Sum_probs=40.4
Q ss_pred CCCCCCCCCeeeEeccCCC----------------CCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 53 DISTPRKLVECRICQDEDA----------------DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 53 ~~~~~~~~~~CRIC~e~~~----------------~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
++..-+....|-||...-+ .+.+.+||. +..|+.||++|.+.-+ ..|+.|+.+..
T Consensus 564 ~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk-l~CPvCR~pLP 634 (636)
T KOG0828|consen 564 LEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK-LICPVCRCPLP 634 (636)
T ss_pred ccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc-ccCCccCCCCC
Confidence 3334466789999976521 135778998 7999999999998422 68999997764
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=93.96 E-value=0.064 Score=38.07 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=36.3
Q ss_pred CeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 61 VECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 61 ~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
-.|.||.+-..+ +...||. +.+-+.|+.+|++. +..|++|+.++.
T Consensus 2 ~~Cpi~~~~~~~-Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD-PVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC-CEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 368899887654 7788874 78999999999987 458999998874
No 28
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.27 E-value=0.024 Score=61.21 Aligned_cols=53 Identities=25% Similarity=0.717 Sum_probs=37.7
Q ss_pred CCCCeeeEeccCCC--CCCc-cccc-ccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 58 RKLVECRICQDEDA--DSNM-ETPC-SCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 58 ~~~~~CRIC~e~~~--~~~L-~~PC-~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
+...+|-||..--. +..+ -.-| -|+ .-.|-.||-+|++.+++..|++|+.++.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45689999975421 2222 1222 232 4689999999999999999999997764
No 29
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=0.29 Score=45.23 Aligned_cols=51 Identities=22% Similarity=0.640 Sum_probs=41.6
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh-CCcccccccccc
Q 024242 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEICQQQF 112 (270)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~k-g~~~CEICk~~y 112 (270)
.+...-.|-||++...| +.+++|. +..==.||-+|+..+ +...|++||.+-
T Consensus 43 ~~~~~FdCNICLd~akd-PVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD-PVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred CCCCceeeeeeccccCC-CEEeecc-----cceehHHHHHHHhhcCCCeeCCcccccc
Confidence 45677899999998765 8999997 566678999999886 466789999875
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=91.09 E-value=0.16 Score=34.49 Aligned_cols=42 Identities=21% Similarity=0.610 Sum_probs=34.4
Q ss_pred eeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccc
Q 024242 62 ECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQ 110 (270)
Q Consensus 62 ~CRIC~e~~--~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~ 110 (270)
.|-||++.. +..+++.+|. +.+..+|+.++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 377898886 3356899997 889999999999 66789999984
No 31
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.21 Score=49.56 Aligned_cols=45 Identities=31% Similarity=0.827 Sum_probs=32.3
Q ss_pred CCeeeEeccCCC-CCCc--ccccccCCCCccccHHHHHHHHHHhCC-ccccccc
Q 024242 60 LVECRICQDEDA-DSNM--ETPCSCCGSLKYAHRRCVQRWCNEKGN-TTCEICQ 109 (270)
Q Consensus 60 ~~~CRIC~e~~~-~~~L--~~PC~C~GSlk~vH~~CL~rWi~~kg~-~~CEICk 109 (270)
..+|.||-+..+ +.++ +.-|. +.+|..||++|+..-.. +.|+||+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 568999944332 2233 33343 68999999999988654 7999999
No 32
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.52 E-value=0.09 Score=41.29 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=35.8
Q ss_pred eeeEeccCCC-----------CCCcccccccCCCCccccHHHHHHHHHHhC-Ccccccccccccc
Q 024242 62 ECRICQDEDA-----------DSNMETPCSCCGSLKYAHRRCVQRWCNEKG-NTTCEICQQQFKP 114 (270)
Q Consensus 62 ~CRIC~e~~~-----------~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg-~~~CEICk~~y~~ 114 (270)
.|-||+.+.+ +=||+-- .| .+.+|.-|+.+|++.+. ...|+.|+++|+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C---~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YC---LHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HH---HHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 7788876632 2245433 45 37899999999999864 4799999999864
No 33
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.25 E-value=0.2 Score=49.49 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=39.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.....|.||++... .+.+.||. +.+...|+.+|+..++ .|++|+..+..
T Consensus 24 e~~l~C~IC~d~~~-~PvitpCg-----H~FCs~CI~~~l~~~~--~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFD-VPVLTSCS-----HTFCSLCIRRCLSNQP--KCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhh-CccCCCCC-----CchhHHHHHHHHhCCC--CCCCCCCcccc
Confidence 45679999988764 46678887 7888999999997643 89999998753
No 34
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=89.05 E-value=0.24 Score=39.27 Aligned_cols=27 Identities=30% Similarity=0.728 Sum_probs=24.3
Q ss_pred ccccHHHHHHHHHHhCCcccccccccccc
Q 024242 86 KYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 86 k~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+..|..|+.+|++.+| .|++++++|+.
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~ 82 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVL 82 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEE
Confidence 6799999999999977 89999999863
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.99 E-value=0.22 Score=50.08 Aligned_cols=48 Identities=19% Similarity=0.605 Sum_probs=35.3
Q ss_pred CCCCCeeeEeccCCCC---CCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 57 PRKLVECRICQDEDAD---SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~---~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
..+.+.|-+|+|..++ +.+-.+|. +-.|-.||++|-.. +|++|++--.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 3577999999998543 34556665 68999999999665 6777765443
No 36
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=86.20 E-value=0.3 Score=41.73 Aligned_cols=43 Identities=30% Similarity=0.474 Sum_probs=29.3
Q ss_pred CCCCeeeEeccCCCC--CCcccccccCCCC-ccccHHHHHHHHHHh
Q 024242 58 RKLVECRICQDEDAD--SNMETPCSCCGSL-KYAHRRCVQRWCNEK 100 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~--~~L~~PC~C~GSl-k~vH~~CL~rWi~~k 100 (270)
....+|+||++.-.+ +...-+|.-.-.+ |..|..|++||-+++
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 346899999988533 5555555433222 569999999997554
No 37
>PLN02189 cellulose synthase
Probab=84.63 E-value=0.64 Score=50.93 Aligned_cols=51 Identities=27% Similarity=0.664 Sum_probs=38.8
Q ss_pred CCCeeeEeccCC---CCCCcccccc-cCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDED---ADSNMETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~---~~~~L~~PC~-C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
...+|+||-++- .++...-.|+ |. --|=+.|. ..-++.|+..|+.||++|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 446999998873 4567778888 62 33888998 4445568899999999997
No 38
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=84.42 E-value=0.38 Score=48.08 Aligned_cols=48 Identities=27% Similarity=0.750 Sum_probs=39.2
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 60 ~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
-..|.||-+.+.+ .-+-||. +..-..||-.|..+.+...|+.|+.+.+
T Consensus 369 FeLCKICaendKd-vkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAENDKD-VKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccCCC-ccccccc-----chHHHHHHHhhcccCCCCCCCceeeEec
Confidence 4689999777654 4578987 5677899999999988899999998875
No 39
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.81 E-value=0.82 Score=39.32 Aligned_cols=55 Identities=29% Similarity=0.694 Sum_probs=45.5
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
..-+|-||+|...|+.+..|=.|-|. +.---=|.+-|--.+-.-.|++||+.|+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 56799999999888889999999883 34455567888888888899999999974
No 40
>PLN02436 cellulose synthase A
Probab=81.66 E-value=0.98 Score=49.73 Aligned_cols=51 Identities=29% Similarity=0.701 Sum_probs=38.9
Q ss_pred CCCeeeEeccC---CCCCCcccccc-cCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDE---DADSNMETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~---~~~~~L~~PC~-C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
...+|+||-++ ..++.+.-.|+ |. --|=+.|. ..-++.|+..|+.||++|+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 44699999887 34677778888 62 33888998 4445568899999999997
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.20 E-value=1.5 Score=47.15 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=25.8
Q ss_pred ccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 76 ETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 76 ~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
..+|.| |+|..|+..|.+.-+ +|++|+.+|-
T Consensus 141 ~k~c~H-----~FC~~Ci~sWsR~aq--TCPiDR~EF~ 171 (1134)
T KOG0825|consen 141 EKHTAH-----YFCEECVGSWSRCAQ--TCPVDRGEFG 171 (1134)
T ss_pred cccccc-----ccHHHHhhhhhhhcc--cCchhhhhhh
Confidence 345665 999999999998766 8999999994
No 42
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.99 E-value=2.2 Score=41.76 Aligned_cols=50 Identities=26% Similarity=0.551 Sum_probs=33.2
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
++..++|=||+.+..+ -++.||+= -..=..|.+...- ....|+||++.+.
T Consensus 287 ~~~gkeCVIClse~rd-t~vLPCRH----LCLCs~Ca~~Lr~--q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 287 SESGKECVICLSESRD-TVVLPCRH----LCLCSGCAKSLRY--QTNNCPICRQPIE 336 (349)
T ss_pred ccCCCeeEEEecCCcc-eEEecchh----hehhHhHHHHHHH--hhcCCCccccchH
Confidence 3567899999988754 56777761 1233456655542 2348999999875
No 43
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=80.58 E-value=1.3 Score=31.60 Aligned_cols=45 Identities=22% Similarity=0.598 Sum_probs=19.8
Q ss_pred eeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHHh--CCccccccccccc
Q 024242 63 CRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEICQQQFK 113 (270)
Q Consensus 63 CRIC~e~~~-~~~L~~PC~C~GSlk~vH~~CL~rWi~~k--g~~~CEICk~~y~ 113 (270)
|.+|-++.+ ...-..||.|. ++-|+.=|.+-+ ++-.|+-|+.+|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 456655542 23457999994 455666666554 4789999999984
No 44
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=78.21 E-value=1.5 Score=36.34 Aligned_cols=26 Identities=19% Similarity=0.666 Sum_probs=23.4
Q ss_pred ccccHHHHHHHHHHhCCccccccccccc
Q 024242 86 KYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 86 k~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
+-.|.-|+.||++.++ .|++|.+++.
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~ 108 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWV 108 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCccee
Confidence 6799999999999877 8999999875
No 45
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=76.84 E-value=15 Score=30.20 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhhceee---cCCCCCchHHHHHHHHHhhhhHHHHHHH
Q 024242 179 SIALIFVFLLILRHTLPVIL---SRTNDYSFPIFLLFLRTAGIVLPIYVMV 226 (270)
Q Consensus 179 ~~aiif~~lLllrh~l~l~~---~~~~~~s~~lf~~~Lr~agillP~yi~~ 226 (270)
...++|+++++++.++.+.. ..-|-|+|.+++++|-...+++--.||+
T Consensus 5 ~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Ilm 55 (108)
T PF06210_consen 5 TFIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILM 55 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777776643 2458899999996666544444344444
No 46
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=73.66 E-value=1.6 Score=29.65 Aligned_cols=40 Identities=30% Similarity=0.687 Sum_probs=26.6
Q ss_pred eeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCC--cccccc
Q 024242 63 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGN--TTCEIC 108 (270)
Q Consensus 63 CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~--~~CEIC 108 (270)
|-||++-.. ++...+|. +-+=+.||.+|.++.+. ..|++|
T Consensus 1 CpiC~~~~~-~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 667876654 47778886 56778999999987654 588887
No 47
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=70.37 E-value=2.2 Score=29.45 Aligned_cols=39 Identities=23% Similarity=0.670 Sum_probs=20.9
Q ss_pred eeEeccCCC-C-CCcccccccCCCCccccHHHHHHHHHHh--CCcccc
Q 024242 63 CRICQDEDA-D-SNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCE 106 (270)
Q Consensus 63 CRIC~e~~~-~-~~L~~PC~C~GSlk~vH~~CL~rWi~~k--g~~~CE 106 (270)
|-||++-.+ + .++..||. +-+=++||++|.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 567777322 2 26889976 678999999999975 456663
No 48
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=69.55 E-value=2.5 Score=40.93 Aligned_cols=50 Identities=30% Similarity=0.579 Sum_probs=35.0
Q ss_pred CCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHHh---------------------CCcccccccccccc
Q 024242 60 LVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEK---------------------GNTTCEICQQQFKP 114 (270)
Q Consensus 60 ~~~CRIC~e~~~~~--~L~~PC~C~GSlk~vH~~CL~rWi~~k---------------------g~~~CEICk~~y~~ 114 (270)
...|-||+-...++ -.+++|- +|.|-.||.|.+++- -...|++|..+.+.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 34666666554333 4578887 899999999998641 14579999987643
No 49
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=68.96 E-value=5.6 Score=44.05 Aligned_cols=52 Identities=27% Similarity=0.607 Sum_probs=34.7
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~---~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
+..+|+||-++- .++.+.--|+=.| --|=+.|.+- =+..|+..|+.||++|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~--FPVCrpCYEY-Er~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA--FPVCRPCYEY-ERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC--Cccccchhhh-hhhcCCccCCccCCchh
Confidence 446999998873 3455554554221 2377788743 33358899999999997
No 50
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=67.90 E-value=2.9 Score=31.26 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=31.0
Q ss_pred CeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 61 VECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 61 ~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
-.|-|+.+-..+ +.+.||. +..=+.|+++|++. +...|++|+.....
T Consensus 5 f~CpIt~~lM~d-PVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 5 FLCPITGELMRD-PVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GB-TTTSSB-SS-EEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred cCCcCcCcHhhC-ceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 356676555543 6777754 68999999999998 55699999877653
No 51
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.47 E-value=2.6 Score=36.05 Aligned_cols=45 Identities=24% Similarity=0.654 Sum_probs=37.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQ 110 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~ 110 (270)
.+...|.||++...+. .+.||. +.+=+.|+..|.. ....|+.|+.
T Consensus 11 ~~~~~C~iC~~~~~~p-~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP-VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC-cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 4678999999987653 788887 6777899999998 7789999994
No 52
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.13 E-value=5.2 Score=40.15 Aligned_cols=49 Identities=20% Similarity=0.610 Sum_probs=36.5
Q ss_pred CCeeeEeccCCC---CCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024242 60 LVECRICQDEDA---DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (270)
Q Consensus 60 ~~~CRIC~e~~~---~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (270)
...|-||+++-. +..++.| .| -+.....|+++|+-.+-...|++|+.+-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl-~c---ghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSL-QC---GHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeee-cc---cccccHHHHHHHHhhhhhhhCcccCChh
Confidence 458999999842 3346655 33 2678899999999766678999998763
No 53
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.97 E-value=6.4 Score=38.00 Aligned_cols=49 Identities=18% Similarity=0.459 Sum_probs=35.3
Q ss_pred CeeeEeccCCCCC----CcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024242 61 VECRICQDEDADS----NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (270)
Q Consensus 61 ~~CRIC~e~~~~~----~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (270)
..|-+|....-.+ -++++|. +-+=..|+.+.+.. +...|+.|+..+...
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccchh
Confidence 4799999874222 2677775 56777999997643 566999999887643
No 54
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.54 E-value=2.9 Score=40.02 Aligned_cols=51 Identities=20% Similarity=0.622 Sum_probs=37.3
Q ss_pred CCCCeeeEeccCC-----CCC----CcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 58 RKLVECRICQDED-----ADS----NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 58 ~~~~~CRIC~e~~-----~~~----~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
.+...|-+|-..- +++ .-..-|+ +-.|+-|+.-|+---++.+|+-||.+-.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4556899996542 222 2234454 7899999999999888889999998764
No 55
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=62.09 E-value=3.6 Score=39.86 Aligned_cols=47 Identities=23% Similarity=0.561 Sum_probs=36.0
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
....||||.+--. -++++||. +-+-.-|+.+.++... .|++|..++.
T Consensus 24 s~lrC~IC~~~i~-ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRIS-IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheee-cceecccc-----cchhHHHHHHHhcCCC--CCccccccHH
Confidence 4678999977653 47889987 4556678888887655 8999998874
No 56
>PLN02195 cellulose synthase A
Probab=60.67 E-value=7.6 Score=42.70 Aligned_cols=52 Identities=17% Similarity=0.452 Sum_probs=34.1
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~---~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
....|+||-++- .++.+.--|+=.| --|=+.|.+- =+..|+..|+.||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~--~pvCrpCyey-er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS--YPLCKACLEY-EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC--Cccccchhhh-hhhcCCccCCccCCccc
Confidence 345899998763 3445444444221 2377888743 33458899999999998
No 57
>PLN02400 cellulose synthase
Probab=57.94 E-value=7.8 Score=43.04 Aligned_cols=52 Identities=21% Similarity=0.576 Sum_probs=33.8
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~---~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
...+|+||-++- .++.+.--|+=.| --|=|.|.+- =+..|+..|+.||++|+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa--FPVCRpCYEY-ERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA--FPVCRPCYEY-ERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC--Cccccchhhe-ecccCCccCcccCCccc
Confidence 446999998873 3455544444221 2266778632 23347899999999997
No 58
>COG4420 Predicted membrane protein [Function unknown]
Probab=57.80 E-value=29 Score=31.49 Aligned_cols=48 Identities=29% Similarity=0.457 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhhceee---cCCCCCchHHHH-HHHHHhhhhHHHHHHH
Q 024242 179 SIALIFVFLLILRHTLPVIL---SRTNDYSFPIFL-LFLRTAGIVLPIYVMV 226 (270)
Q Consensus 179 ~~aiif~~lLllrh~l~l~~---~~~~~~s~~lf~-~~Lr~agillP~yi~~ 226 (270)
.+.+.|.++|+++..+.+.+ ..-+.|+|.++. ++.-.|.|--|+..|.
T Consensus 59 ~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~AaiqAp~IlmS 110 (191)
T COG4420 59 AFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQAPLILMS 110 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 56778888889999888843 334788988888 4444577777765554
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=57.68 E-value=6.9 Score=40.74 Aligned_cols=56 Identities=27% Similarity=0.700 Sum_probs=43.8
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccccccccCC
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKPGYTAP 119 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~---kg~~~CEICk~~y~~~yt~p 119 (270)
.+..+|-+|++..++ .+++-|. +-.-+.|+..++.. +.+.+|+.|.-.....-+.|
T Consensus 534 k~~~~C~lc~d~aed-~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED-YIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred cCceeecccCChhhh-hHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 457899999988764 7788877 45678999998875 45799999998887665555
No 60
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=56.56 E-value=12 Score=29.46 Aligned_cols=53 Identities=26% Similarity=0.578 Sum_probs=22.7
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~---~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+..+|.||-++- .++.+..-|.=-+ --+=+.|.+-=.++ |+..|..||.+|+-
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~--fPvCr~CyEYErke-g~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECA--FPVCRPCYEYERKE-GNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-------HHHHHHHHHT-S-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccC--CccchhHHHHHhhc-CcccccccCCCccc
Confidence 457999998773 3455555554222 34778887765554 77899999999974
No 61
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=55.84 E-value=4.1 Score=31.36 Aligned_cols=31 Identities=26% Similarity=0.689 Sum_probs=23.1
Q ss_pred CCeeeEeccCCCCCC-cccccccCCCCccccHHHHHH
Q 024242 60 LVECRICQDEDADSN-METPCSCCGSLKYAHRRCVQR 95 (270)
Q Consensus 60 ~~~CRIC~e~~~~~~-L~~PC~C~GSlk~vH~~CL~r 95 (270)
...|.+|...-..+. .+.||. +.+|..|+.|
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 457999988865444 467875 6899999864
No 62
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=54.19 E-value=7.1 Score=26.81 Aligned_cols=22 Identities=23% Similarity=0.742 Sum_probs=15.9
Q ss_pred cccHHHHHHHHHHhCCcccccc
Q 024242 87 YAHRRCVQRWCNEKGNTTCEIC 108 (270)
Q Consensus 87 ~vH~~CL~rWi~~kg~~~CEIC 108 (270)
-.|..|++++++.+.+..|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 4999999999999887789877
No 63
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=53.99 E-value=12 Score=30.88 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 024242 218 IVLPIYVMVKAVTALQRHRYQQ 239 (270)
Q Consensus 218 illP~yi~~~a~~~~q~~r~~~ 239 (270)
||+.++|++-.+..+-|||+|.
T Consensus 8 ii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 8 IIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333443433333444443
No 64
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=53.12 E-value=5.1 Score=39.56 Aligned_cols=47 Identities=28% Similarity=0.565 Sum_probs=36.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
..-.|-||++=.. -+++.||. +-.-.-|+...++++. .|+.|..+|.
T Consensus 22 ~lLRC~IC~eyf~-ip~itpCs-----HtfCSlCIR~~L~~~p--~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMITPCS-----HTFCSLCIRKFLSYKP--QCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc-Cceecccc-----chHHHHHHHHHhccCC--CCCceecccc
Confidence 3468999987664 48999976 4556778888888765 8999998875
No 65
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.06 E-value=21 Score=32.23 Aligned_cols=51 Identities=18% Similarity=0.513 Sum_probs=34.5
Q ss_pred CCCCCCCeeeEeccCCCCC-CcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024242 55 STPRKLVECRICQDEDADS-NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (270)
Q Consensus 55 ~~~~~~~~CRIC~e~~~~~-~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (270)
...+...-|-||++...+. +.-+-|. +.+=.+|++.-++. ..+|++|+.+.
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkI 177 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKI 177 (187)
T ss_pred cccccccCCCceecchhhccccccccc-----hhHHHHHHHHHHHh--CCCCCCccccc
Confidence 3445558899999987553 3334444 55667887776654 56999999754
No 66
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=52.09 E-value=14 Score=41.00 Aligned_cols=53 Identities=28% Similarity=0.701 Sum_probs=35.1
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 58 RKLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 58 ~~~~~CRIC~e~~---~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
-...+|.||-++- .++.+.--|+=.| --|=+.|.+ .=...|+..|+.||++|+
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~--fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCG--FPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCC--Cccccchhh-hhhhcCCccCCccCCchh
Confidence 3567999998773 3455544444221 236778873 334458899999999997
No 67
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=51.68 E-value=16 Score=36.04 Aligned_cols=36 Identities=22% Similarity=0.671 Sum_probs=27.5
Q ss_pred cccccccCCCCccccHHHHHHHHHHh-----------CCccccccccccc
Q 024242 75 METPCSCCGSLKYAHRRCVQRWCNEK-----------GNTTCEICQQQFK 113 (270)
Q Consensus 75 L~~PC~C~GSlk~vH~~CL~rWi~~k-----------g~~~CEICk~~y~ 113 (270)
--.+|.|+ ---=.+|+-||+..+ |+-.|+.|+.+|=
T Consensus 305 ~C~~C~CR---PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 305 PCQQCYCR---PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred CCcccccc---chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 35678885 234579999999875 4679999999984
No 68
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.25 E-value=41 Score=31.72 Aligned_cols=50 Identities=20% Similarity=0.516 Sum_probs=34.8
Q ss_pred CCCCeeeEeccCCCCCC-cccccccCCCCccccHHHHHHHHHHh------CCcccccccccc
Q 024242 58 RKLVECRICQDEDADSN-METPCSCCGSLKYAHRRCVQRWCNEK------GNTTCEICQQQF 112 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~-L~~PC~C~GSlk~vH~~CL~rWi~~k------g~~~CEICk~~y 112 (270)
.....||.|.....++. ...-| .+..|-+||..|-..= ....|+-|.++.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvC-----yhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVC-----YHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCcceeehh-----hhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 35678999976643332 22223 3789999999998652 357999999875
No 69
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.54 E-value=17 Score=35.64 Aligned_cols=50 Identities=18% Similarity=0.555 Sum_probs=35.7
Q ss_pred CCCCeeeEeccCCCCCC-------cccccccCCCCccccHHHHHHHHHHhC-----Ccccccccccc
Q 024242 58 RKLVECRICQDEDADSN-------METPCSCCGSLKYAHRRCVQRWCNEKG-----NTTCEICQQQF 112 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~-------L~~PC~C~GSlk~vH~~CL~rWi~~kg-----~~~CEICk~~y 112 (270)
.....|-||.+...+.. ...+|+ +..=.+|+.+|-..+. ...|++|+..-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45789999998854322 123465 4566789999997766 68999998653
No 70
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=42.73 E-value=11 Score=25.22 Aligned_cols=19 Identities=16% Similarity=0.555 Sum_probs=14.3
Q ss_pred cccccccccccccccCCCC
Q 024242 103 TTCEICQQQFKPGYTAPPP 121 (270)
Q Consensus 103 ~~CEICk~~y~~~yt~p~~ 121 (270)
+.|+-|+..|...|.+|..
T Consensus 2 r~C~~Cg~~Yh~~~~pP~~ 20 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPKV 20 (36)
T ss_dssp EEETTTTEEEETTTB--SS
T ss_pred cCcCCCCCccccccCCCCC
Confidence 4799999999988877654
No 71
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.15 E-value=22 Score=36.54 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=35.4
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh---CCcccccccccccc
Q 024242 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK---GNTTCEICQQQFKP 114 (270)
Q Consensus 60 ~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~k---g~~~CEICk~~y~~ 114 (270)
...|-||+++..-..+ +-|. +..=-.||.+.++.+ +-..|+||...+.+
T Consensus 186 ~~~CPICL~~~~~p~~-t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR-TNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccc-cccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6899999998754333 3354 556678888877654 67899999887754
No 72
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=42.04 E-value=12 Score=37.58 Aligned_cols=47 Identities=26% Similarity=0.690 Sum_probs=37.6
Q ss_pred CCCeeeEeccCC--CCCCc-ccccccCCCCccccHHHHHHHHHHhCCcccccccc
Q 024242 59 KLVECRICQDED--ADSNM-ETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQ 110 (270)
Q Consensus 59 ~~~~CRIC~e~~--~~~~L-~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~ 110 (270)
.+-.|-.|-+.- .++.| ..||+ +..|..|++..+..++++.|+-|+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 456788997663 22333 68998 7999999999999999999999993
No 73
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=41.83 E-value=22 Score=38.81 Aligned_cols=53 Identities=25% Similarity=0.579 Sum_probs=39.1
Q ss_pred CCCCCeeeEeccCCC--CCCcccccccCCCCccccHHHHHHHHHHh-----CCccccccccccc
Q 024242 57 PRKLVECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWCNEK-----GNTTCEICQQQFK 113 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~--~~~L~~PC~C~GSlk~vH~~CL~rWi~~k-----g~~~CEICk~~y~ 113 (270)
.+...+|-||.+.-. ...| +|+.=.+.+|..|+++|-+.+ ..|.|+-|+..++
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 356689999998853 2233 233335789999999999764 3689999997765
No 74
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.07 E-value=30 Score=32.93 Aligned_cols=51 Identities=25% Similarity=0.612 Sum_probs=38.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHH-HHHHhCCcccccccccccc
Q 024242 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQR-WCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~r-Wi~~kg~~~CEICk~~y~~ 114 (270)
+.....|-||.+... .+.-+||. +..=-.||.. |...+- ..|++|+..-.|
T Consensus 212 p~~d~kC~lC~e~~~-~ps~t~Cg-----HlFC~~Cl~~~~t~~k~-~~CplCRak~~p 263 (271)
T COG5574 212 PLADYKCFLCLEEPE-VPSCTPCG-----HLFCLSCLLISWTKKKY-EFCPLCRAKVYP 263 (271)
T ss_pred cccccceeeeecccC-Cccccccc-----chhhHHHHHHHHHhhcc-ccCchhhhhccc
Confidence 345678999988764 47788887 6777889998 887643 479999987544
No 75
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.67 E-value=59 Score=32.23 Aligned_cols=41 Identities=20% Similarity=0.446 Sum_probs=22.2
Q ss_pred ccccccCCCccchhhccC-CcchhHHHHHHHHHHHHHHHHhhhce
Q 024242 153 ADHSFLQSPTYEEYSASN-TRSMICCRSIALIFVFLLILRHTLPV 196 (270)
Q Consensus 153 a~~~~~~~~~y~~~~~~~-~~~~~~CR~~aiif~~lLllrh~l~l 196 (270)
.++.|.+.| ..|.|.- +++..+ .++.++|.++.|.--.+|+
T Consensus 168 ~dQ~F~d~d--e~YVW~yep~~~~~-~vl~~~fvl~tlaivLFPL 209 (372)
T KOG2927|consen 168 DDQAFQDGD--EHYVWIYEPRPLMW-QVLGVLFVLVTLAIVLFPL 209 (372)
T ss_pred cchhhcccC--ceEEEeccCCchhH-HHHHHHHHHHHHHHHhccc
Confidence 677788853 4566654 444333 4555555444444444555
No 76
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=35.29 E-value=36 Score=39.95 Aligned_cols=55 Identities=22% Similarity=0.450 Sum_probs=39.8
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh--------CCccccccccccc
Q 024242 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK--------GNTTCEICQQQFK 113 (270)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~k--------g~~~CEICk~~y~ 113 (270)
.......|-||+.+.-. ..||---|--+..|..|..+-+..+ +...|+||+.+..
T Consensus 3482 kQD~DDmCmICFTE~L~---AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALS---AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhC---CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 34456899999987532 3566544445899999997766543 5679999998875
No 78
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=34.12 E-value=1e+02 Score=27.29 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=17.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 024242 211 LFLRTAGIVLPIYVMVKAVTALQRHRYQ 238 (270)
Q Consensus 211 ~~Lr~agillP~yi~~~a~~~~q~~r~~ 238 (270)
+..-.+||++|+.++..-++.+-+|.+.
T Consensus 31 m~tILiaIvVliiiiivli~lcssRKkK 58 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCSSRKKK 58 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4444567777776666666666555444
No 79
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=33.23 E-value=41 Score=31.80 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=35.7
Q ss_pred hccCCcchhHHHHHHHHHHHHHHHHhhhcee-ecCCCCCchHHHH-HHHHHhhhhHHHHHHHHHHH
Q 024242 167 SASNTRSMICCRSIALIFVFLLILRHTLPVI-LSRTNDYSFPIFL-LFLRTAGIVLPIYVMVKAVT 230 (270)
Q Consensus 167 ~~~~~~~~~~CR~~aiif~~lLllrh~l~l~-~~~~~~~s~~lf~-~~Lr~agillP~yi~~~a~~ 230 (270)
.-.+..|..|.|.=+++|.+|-++-.++.+. .-|+-.|+...-. +++=+.+||+=++.++|+++
T Consensus 184 rKvSSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~y 249 (256)
T PF09788_consen 184 RKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIY 249 (256)
T ss_pred ceeccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhhe
Confidence 3344556678888888887666666665553 2344333322211 33334445566677777764
No 80
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=32.27 E-value=31 Score=24.62 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=12.1
Q ss_pred ccccccccccccccc
Q 024242 103 TTCEICQQQFKPGYT 117 (270)
Q Consensus 103 ~~CEICk~~y~~~yt 117 (270)
..|.+|++.|.+..-
T Consensus 2 y~C~~CgyiYd~~~G 16 (50)
T cd00730 2 YECRICGYIYDPAEG 16 (50)
T ss_pred cCCCCCCeEECCCCC
Confidence 579999999987543
No 81
>COG4846 CcdC Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=32.13 E-value=61 Score=28.27 Aligned_cols=43 Identities=23% Similarity=0.433 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhhceeecCCCCCchHHHH-HHHHHhhhhHHHHH
Q 024242 181 ALIFVFLLILRHTLPVILSRTNDYSFPIFL-LFLRTAGIVLPIYV 224 (270)
Q Consensus 181 aiif~~lLllrh~l~l~~~~~~~~s~~lf~-~~Lr~agillP~yi 224 (270)
..|++.||++|..+-..+|+.-|+. .|-. |++-+.|.++|-=+
T Consensus 97 ~~ILigLLiiRi~~K~~is~sid~g-eLsGMF~ilAf~MIvPWRi 140 (163)
T COG4846 97 PVILIGLLIIRIVMKYIISGSIDVG-ELSGMFWILAFGMIVPWRI 140 (163)
T ss_pred hhHHHHHHHHHHHHHHHHcCCccHH-HhhhHHHHHHHHhhhHHHH
Confidence 4588999999999999888876654 3434 78888888888644
No 82
>COG2322 Predicted membrane protein [Function unknown]
Probab=31.50 E-value=1.1e+02 Score=27.43 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhhceee--cCCCC----CchHHHH-HHHHHhhhhHHHHHHHHHHHHH
Q 024242 178 RSIALIFVFLLILRHTLPVIL--SRTND----YSFPIFL-LFLRTAGIVLPIYVMVKAVTAL 232 (270)
Q Consensus 178 R~~aiif~~lLllrh~l~l~~--~~~~~----~s~~lf~-~~Lr~agillP~yi~~~a~~~~ 232 (270)
-+.+++|.++-+.||-+.--. ++++. |-+-|++ ..|-++++-|-.|.++++++-.
T Consensus 83 ~~l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~Hi~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 83 FTLALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILITHIILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHHHHHHHHHhhhHHHHHHHHHhcch
Confidence 367788888889999776632 55544 4566677 8899999999999999998644
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=31.45 E-value=44 Score=33.26 Aligned_cols=48 Identities=23% Similarity=0.581 Sum_probs=31.9
Q ss_pred CCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHHh--CCccccccccccc
Q 024242 60 LVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEICQQQFK 113 (270)
Q Consensus 60 ~~~CRIC~e~~~-~~~L~~PC~C~GSlk~vH~~CL~rWi~~k--g~~~CEICk~~y~ 113 (270)
...|-.|.++.+ ...-..||.|. | +-|---|-+.+ -+-+|+-|+..|.
T Consensus 14 ed~cplcie~mditdknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccCcccccccccccCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhcc
Confidence 346999998853 22346899993 3 33444465444 3569999999984
No 84
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.44 E-value=49 Score=29.20 Aligned_cols=14 Identities=7% Similarity=0.309 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q 024242 220 LPIYVMVKAVTALQ 233 (270)
Q Consensus 220 lP~yi~~~a~~~~q 233 (270)
+-.|+++|+++.-.
T Consensus 108 ~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 108 AILYFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHHHHhhcc
Confidence 33899999987543
No 85
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.30 E-value=31 Score=33.60 Aligned_cols=27 Identities=22% Similarity=0.600 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHH-----------hCCccccccccccc
Q 024242 87 YAHRRCVQRWCNE-----------KGNTTCEICQQQFK 113 (270)
Q Consensus 87 ~vH~~CL~rWi~~-----------kg~~~CEICk~~y~ 113 (270)
.--++||.+|+.. .|+-.|+.|+..|-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 4568999999964 36789999999984
No 86
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=30.76 E-value=33 Score=30.84 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 024242 219 VLPIYVMVKAVTALQRHRYQQ 239 (270)
Q Consensus 219 llP~yi~~~a~~~~q~~r~~~ 239 (270)
.+|-.+++-.+..+||||+++
T Consensus 162 yiPAlLLL~lv~~lQrRR~~~ 182 (183)
T PF11874_consen 162 YIPALLLLGLVAWLQRRRRRK 182 (183)
T ss_pred eHHHHHHHHHHHHHhhhhccC
Confidence 566777777778899999775
No 87
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=29.83 E-value=21 Score=19.74 Aligned_cols=11 Identities=36% Similarity=1.129 Sum_probs=7.2
Q ss_pred ccccccccccc
Q 024242 104 TCEICQQQFKP 114 (270)
Q Consensus 104 ~CEICk~~y~~ 114 (270)
.|++|+..|..
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 69999998864
No 88
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=29.69 E-value=26 Score=37.61 Aligned_cols=56 Identities=29% Similarity=0.589 Sum_probs=40.1
Q ss_pred CCCCeeeEeccCCCCCC----cccccccCCCCccccHHHHHHH---HHHh-----CCccccccccccc
Q 024242 58 RKLVECRICQDEDADSN----METPCSCCGSLKYAHRRCVQRW---CNEK-----GNTTCEICQQQFK 113 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~----L~~PC~C~GSlk~vH~~CL~rW---i~~k-----g~~~CEICk~~y~ 113 (270)
...+.|.||.|++.++. -..-|+=.|=-.-+|-.|-|+- |.|- +..+|--|+|.|.
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 45689999999864332 3455665555578999999875 3443 3579999999995
No 89
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.15 E-value=61 Score=31.57 Aligned_cols=50 Identities=24% Similarity=0.475 Sum_probs=30.8
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFKPGY 116 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y~~~y 116 (270)
...++|-||+... .|+-++..-|.-|..---.. .+...|.+|.+++...+
T Consensus 5 ~~~~eC~IC~nt~---------n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 5 TKKKECLICYNTG---------NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred ccCCcceeeeccC---------CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 3567999998764 23334455677774322111 24567999999986443
No 90
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=27.82 E-value=29 Score=21.59 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=10.5
Q ss_pred CCccccccccccc
Q 024242 101 GNTTCEICQQQFK 113 (270)
Q Consensus 101 g~~~CEICk~~y~ 113 (270)
....|+.|++.|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 3468999999985
No 91
>PF04532 DUF587: Protein of unknown function (DUF587); InterPro: IPR007618 This domain is found at the N-termini of some human herpesvirus U58 proteins, and some cytomegalovirus UL87 proteins. This region is always found N-terminal to the UL87 (IPR004285 from INTERPRO), which has no known function.
Probab=27.23 E-value=21 Score=32.73 Aligned_cols=26 Identities=35% Similarity=0.668 Sum_probs=19.6
Q ss_pred eccCCCCC--C-cccccccCCCCccccHH
Q 024242 66 CQDEDADS--N-METPCSCCGSLKYAHRR 91 (270)
Q Consensus 66 C~e~~~~~--~-L~~PC~C~GSlk~vH~~ 91 (270)
|..++.|. . ...|+.|.|.+-|||++
T Consensus 93 CyCdeWd~~eyl~~~~~~C~GP~LYVhr~ 121 (215)
T PF04532_consen 93 CYCDEWDTNEYLAECAYFCRGPLLYVHRK 121 (215)
T ss_pred eeecceehhhHHhhCCcccCCceEEEEcc
Confidence 55555442 2 47999999999999994
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=26.96 E-value=79 Score=28.05 Aligned_cols=39 Identities=23% Similarity=0.555 Sum_probs=26.0
Q ss_pred CCeeeEeccCCCCC---------CcccccccCCCCccccHHHHHHHHHHh
Q 024242 60 LVECRICQDEDADS---------NMETPCSCCGSLKYAHRRCVQRWCNEK 100 (270)
Q Consensus 60 ~~~CRIC~e~~~~~---------~L~~PC~C~GSlk~vH~~CL~rWi~~k 100 (270)
...|-||.|-.-.. .--.|=-|.. .|-|..||.+..+..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCC--ccchhHHHHHHHHHh
Confidence 46899998765221 1233334654 588999999998763
No 93
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=26.32 E-value=3.7e+02 Score=22.09 Aligned_cols=61 Identities=16% Similarity=0.365 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhceee-cCCCCCchHHHH-HHHHH-hhhhHHHHHHHHHHHHHHHHH
Q 024242 174 MICCRSIALIFVFLLILRHTLPVIL-SRTNDYSFPIFL-LFLRT-AGIVLPIYVMVKAVTALQRHR 236 (270)
Q Consensus 174 ~~~CR~~aiif~~lLllrh~l~l~~-~~~~~~s~~lf~-~~Lr~-agillP~yi~~~a~~~~q~~r 236 (270)
+..-+++.+++.+++.+-.+-++-+ --.....++|.. +++-+ .|.|+-++++. .+++|.||
T Consensus 26 vi~~gilillLllifav~Nt~~V~~~~lfg~~~~PLilvil~s~v~G~Li~~~~~~--~Ri~~lrr 89 (98)
T COG5416 26 VIIVGILILLLLLIFAVINTDSVEFNYLFGQWELPLILVILGAAVVGALIAMFAGI--ARILQLRR 89 (98)
T ss_pred HHHHHHHHHHHHHHHHHhccCceEEEeecchhhhhHHHHHHHHHHHHHHHHHHHhH--HHHHHHHH
Confidence 3444455544444445555555522 112236677777 33333 56665444433 34555554
No 94
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=24.88 E-value=1.4e+02 Score=23.81 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=11.6
Q ss_pred HhhhhHHHHHHHHHHHHHH
Q 024242 215 TAGIVLPIYVMVKAVTALQ 233 (270)
Q Consensus 215 ~agillP~yi~~~a~~~~q 233 (270)
.-+.++++|...-+++-+|
T Consensus 53 ~gv~~~~ly~ffs~Ltkl~ 71 (84)
T PRK13718 53 SGVLLFILYFFFSALTKLQ 71 (84)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3344567788777766443
No 95
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.77 E-value=44 Score=34.13 Aligned_cols=45 Identities=33% Similarity=0.736 Sum_probs=34.2
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.....|+||.++. ..-+.||. |..|+.+|...+. .|++|+.....
T Consensus 477 ~~~~~~~~~~~~~--~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEM--SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHH--Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhhc
Confidence 4568999998877 23345655 9999999998765 89999876654
No 96
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=24.00 E-value=29 Score=19.69 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=9.3
Q ss_pred ccccccccccc
Q 024242 104 TCEICQQQFKP 114 (270)
Q Consensus 104 ~CEICk~~y~~ 114 (270)
.|+.|+..|..
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 69999999864
No 97
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.80 E-value=53 Score=23.04 Aligned_cols=23 Identities=17% Similarity=0.576 Sum_probs=12.0
Q ss_pred HHHHHHHH-hC-Ccccccccccccc
Q 024242 92 CVQRWCNE-KG-NTTCEICQQQFKP 114 (270)
Q Consensus 92 CL~rWi~~-kg-~~~CEICk~~y~~ 114 (270)
-+.++++. ++ ...|++|+.+|..
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDE 32 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-H
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCH
Confidence 45666655 22 2399999999853
No 98
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.45 E-value=1.6e+02 Score=34.06 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=16.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q 024242 211 LFLRTAGIVLPIYVMVKAVTALQ 233 (270)
Q Consensus 211 ~~Lr~agillP~yi~~~a~~~~q 233 (270)
+++..++++||+.++.+++.++.
T Consensus 77 ~LFGl~AYLLP~LL~~~a~~l~R 99 (1355)
T PRK10263 77 FIFGVMAYTIPVIIVGGCWFAWR 99 (1355)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHh
Confidence 67778889999877666665443
No 99
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=23.28 E-value=2.3e+02 Score=27.26 Aligned_cols=9 Identities=0% Similarity=0.206 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 024242 222 IYVMVKAVT 230 (270)
Q Consensus 222 ~yi~~~a~~ 230 (270)
+|++.|.++
T Consensus 55 ~~~~~~~~~ 63 (398)
T PRK10747 55 LFAIEWLLR 63 (398)
T ss_pred HHHHHHHHH
Confidence 455555443
No 100
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.42 E-value=1.2e+02 Score=30.32 Aligned_cols=51 Identities=18% Similarity=0.473 Sum_probs=31.2
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
++...|-||-+... -.-+.||.= -.-..|-.|...-=.+..|.+|+.+...
T Consensus 59 Een~~C~ICA~~~T-Ys~~~PC~H-----~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTT-YSARYPCGH-----QICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCce-EEEeccCCc-----hHHHHHHHHHHHHHhccCCCccccccce
Confidence 35678999976642 134688871 2222344444333356789999999853
No 101
>PHA03375 hypothetical protein; Provisional
Probab=22.38 E-value=30 Score=37.20 Aligned_cols=26 Identities=38% Similarity=0.796 Sum_probs=19.7
Q ss_pred eccCCCCC--C-cccccccCCCCccccHH
Q 024242 66 CQDEDADS--N-METPCSCCGSLKYAHRR 91 (270)
Q Consensus 66 C~e~~~~~--~-L~~PC~C~GSlk~vH~~ 91 (270)
|.+++.|. . ...+|.|.|.+-|||++
T Consensus 99 CycdeWd~~eyl~~~~~~C~gP~LYvhr~ 127 (844)
T PHA03375 99 CYCDEWDVNEYLAKTACNCRGPLLYIHRS 127 (844)
T ss_pred ccccchhhhhhhhhcccccCCceEEEEec
Confidence 56665432 2 47999999999999994
No 102
>PF05210 Sprouty: Sprouty protein (Spry); InterPro: IPR007875 Sprouty (Spry) and Spred (Sprouty related EVH1 domain) proteins have been identified as inhibitors of the Ras/mitogen-activated protein kinase (MAPK) cascade, a pathway crucial for developmental processes initiated by activation of various receptor tyrosine kinases [1,2]. These proteins share a conserved, C-terminal cysteine-rich region, the SPR domain. This domain has been defined as a novel cytosol to membrane translocation domain [, , , ]. It has been found to be a PtdIns(4,5)P2-binding domain that targets the proteins to a cellular localization that maximizes their inhibitory potential [, ]. It also mediates homodimer formation of these proteins [, ]. The SPR domain can occur in association with the WH1 domain (see IPR000697 from INTERPRO) (located in the N-terminal part of the proteins) in the Spred proteins.; GO: 0007275 multicellular organismal development, 0009966 regulation of signal transduction, 0016020 membrane
Probab=22.20 E-value=62 Score=26.84 Aligned_cols=19 Identities=42% Similarity=1.050 Sum_probs=15.7
Q ss_pred ccccccCCCCccccHHHHHHHHHH
Q 024242 76 ETPCSCCGSLKYAHRRCVQRWCNE 99 (270)
Q Consensus 76 ~~PC~C~GSlk~vH~~CL~rWi~~ 99 (270)
..||+|.. +..|..||.--
T Consensus 59 d~PCSC~~-----~~~c~~RW~~L 77 (108)
T PF05210_consen 59 DHPCSCDT-----PSRCCARWLAL 77 (108)
T ss_pred CCccccCC-----ccchHHHHHHH
Confidence 46999976 88999999753
No 103
>PF04641 Rtf2: Rtf2 RING-finger
Probab=22.11 E-value=82 Score=29.06 Aligned_cols=49 Identities=18% Similarity=0.480 Sum_probs=33.6
Q ss_pred CCCCeeeEeccCCCCC---CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADS---NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~---~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
...-.|-|...+.... -.+.||.| .+-..+|..- +....|.+|+.+|..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~---k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL---KKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh---cccccccccCCcccc
Confidence 4455666666554321 25789998 6777887776 245679999999973
No 104
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=21.34 E-value=42 Score=24.28 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=18.6
Q ss_pred CccccHHHHHHHHHHhCCccccccccccc
Q 024242 85 LKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 85 lk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
-+|.=..||..-+..+ ..|+||+++.+
T Consensus 20 dHYLCl~CLt~ml~~s--~~C~iC~~~LP 46 (50)
T PF03854_consen 20 DHYLCLNCLTLMLSRS--DRCPICGKPLP 46 (50)
T ss_dssp S-EEEHHHHHHT-SSS--SEETTTTEE--
T ss_pred chhHHHHHHHHHhccc--cCCCcccCcCc
Confidence 4788889988766554 49999998764
No 105
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.17 E-value=6.2e+02 Score=24.75 Aligned_cols=34 Identities=21% Similarity=0.028 Sum_probs=16.4
Q ss_pred CCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 024242 203 DYSFPIFLLFLRTAGIVLPIYVMVKAVTALQRHR 236 (270)
Q Consensus 203 ~~s~~lf~~~Lr~agillP~yi~~~a~~~~q~~r 236 (270)
...+..+.+.|-.+..+|++|=-.-.+++.-|.-
T Consensus 256 ~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~ 289 (318)
T KOG1607|consen 256 PKPSYYFFNCLLLALQLLHIYWFYLILRMAYRVI 289 (318)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333355556666777764333333333333
Done!