Query 024242
Match_columns 270
No_of_seqs 243 out of 785
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 4.8E-19 1.6E-23 128.5 4.1 55 59-114 5-59 (60)
2 2d8s_A Cellular modulator of i 99.7 4.4E-17 1.5E-21 124.2 5.7 64 58-121 13-77 (80)
3 2kiz_A E3 ubiquitin-protein li 98.1 3.7E-06 1.3E-10 59.9 4.6 50 58-114 12-63 (69)
4 2ep4_A Ring finger protein 24; 98.0 6.7E-06 2.3E-10 59.3 5.5 50 58-114 13-64 (74)
5 2ect_A Ring finger protein 126 97.9 5E-06 1.7E-10 60.6 3.4 52 58-116 13-66 (78)
6 1v87_A Deltex protein 2; ring- 97.9 7.7E-06 2.6E-10 63.7 4.5 50 61-115 26-95 (114)
7 2ecm_A Ring finger and CHY zin 97.8 8.3E-06 2.8E-10 55.3 2.5 48 59-113 4-54 (55)
8 1x4j_A Ring finger protein 38; 97.8 1.1E-05 3.8E-10 58.5 3.3 50 58-114 21-72 (75)
9 2ecl_A Ring-box protein 2; RNF 97.7 1.1E-05 3.9E-10 60.1 1.8 27 86-114 50-76 (81)
10 1chc_A Equine herpes virus-1 r 97.7 3.6E-05 1.2E-09 54.4 4.1 49 59-114 4-52 (68)
11 1iym_A EL5; ring-H2 finger, ub 97.7 1E-05 3.6E-10 55.0 1.2 48 59-113 4-54 (55)
12 2yur_A Retinoblastoma-binding 97.7 3E-05 1E-09 56.4 3.6 50 58-113 13-63 (74)
13 2ct2_A Tripartite motif protei 97.7 4.4E-05 1.5E-09 56.2 4.5 52 58-114 13-68 (88)
14 2ea6_A Ring finger protein 4; 97.6 1.5E-05 5.2E-10 56.0 1.8 50 58-114 13-68 (69)
15 2ysl_A Tripartite motif-contai 97.6 3.6E-05 1.2E-09 55.1 3.7 52 57-114 17-69 (73)
16 2l0b_A E3 ubiquitin-protein li 97.6 2.8E-05 9.7E-10 58.9 3.3 50 58-114 38-89 (91)
17 2d8t_A Dactylidin, ring finger 97.6 1.8E-05 6.2E-10 56.9 1.5 50 58-115 13-62 (71)
18 2ecv_A Tripartite motif-contai 97.6 0.00013 4.4E-09 52.9 6.2 51 58-114 17-71 (85)
19 2ecn_A Ring finger protein 141 97.6 2.1E-05 7.3E-10 56.0 1.9 48 58-114 13-60 (70)
20 2ecw_A Tripartite motif-contai 97.5 0.0001 3.5E-09 53.5 4.9 51 58-114 17-71 (85)
21 2ct0_A Non-SMC element 1 homol 97.5 5E-05 1.7E-09 57.0 3.2 52 58-114 13-64 (74)
22 2ecy_A TNF receptor-associated 97.5 5.6E-05 1.9E-09 53.5 3.1 51 57-114 12-62 (66)
23 2djb_A Polycomb group ring fin 97.5 8.1E-05 2.8E-09 53.6 3.9 50 58-114 13-62 (72)
24 2csy_A Zinc finger protein 183 97.4 0.00014 4.7E-09 53.4 4.8 48 58-113 13-60 (81)
25 2ysj_A Tripartite motif-contai 97.4 0.00017 5.8E-09 50.4 4.6 46 57-108 17-63 (63)
26 3ng2_A RNF4, snurf, ring finge 97.4 3.1E-05 1.1E-09 54.9 0.8 50 58-114 8-63 (71)
27 3ztg_A E3 ubiquitin-protein li 97.4 0.00013 4.3E-09 54.6 3.7 50 58-113 11-61 (92)
28 2xeu_A Ring finger protein 4; 97.3 3.6E-05 1.2E-09 53.3 0.2 49 59-114 2-56 (64)
29 3dpl_R Ring-box protein 1; ubi 97.3 0.0001 3.5E-09 58.4 2.8 47 60-113 37-100 (106)
30 2ecj_A Tripartite motif-contai 97.3 0.0002 6.8E-09 48.7 3.4 45 58-108 13-58 (58)
31 1t1h_A Gspef-atpub14, armadill 97.2 0.00019 6.4E-09 52.1 2.9 50 58-114 6-55 (78)
32 2egp_A Tripartite motif-contai 97.1 0.00011 3.9E-09 53.0 1.1 51 58-114 10-65 (79)
33 4a0k_B E3 ubiquitin-protein li 96.9 0.00014 4.8E-09 58.9 0.3 47 60-113 48-111 (117)
34 3lrq_A E3 ubiquitin-protein li 96.9 0.00032 1.1E-08 53.9 2.2 49 59-114 21-70 (100)
35 1g25_A CDK-activating kinase a 96.8 0.00073 2.5E-08 47.5 3.2 49 60-114 3-55 (65)
36 1e4u_A Transcriptional repress 96.8 0.00096 3.3E-08 49.8 3.8 53 58-114 9-62 (78)
37 1jm7_A BRCA1, breast cancer ty 96.8 0.00081 2.8E-08 51.6 3.4 49 60-114 21-70 (112)
38 3fl2_A E3 ubiquitin-protein li 96.7 0.00087 3E-08 52.9 3.3 49 59-114 51-99 (124)
39 2y43_A E3 ubiquitin-protein li 96.7 0.0005 1.7E-08 52.2 1.8 48 59-114 21-69 (99)
40 2ckl_B Ubiquitin ligase protei 96.6 0.00066 2.3E-08 56.2 2.0 48 59-113 53-101 (165)
41 4ayc_A E3 ubiquitin-protein li 96.6 0.00051 1.8E-08 55.5 1.1 45 61-113 54-98 (138)
42 1z6u_A NP95-like ring finger p 96.4 0.0017 5.6E-08 53.8 2.9 50 59-115 77-126 (150)
43 4ap4_A E3 ubiquitin ligase RNF 96.3 0.0006 2.1E-08 53.1 -0.0 49 59-114 6-60 (133)
44 2ckl_A Polycomb group ring fin 96.3 0.00092 3.1E-08 51.6 0.9 48 59-114 14-62 (108)
45 3hct_A TNF receptor-associated 96.3 0.0021 7.2E-08 50.5 3.0 51 58-115 16-66 (118)
46 3k1l_B Fancl; UBC, ring, RWD, 96.0 0.0026 8.9E-08 60.7 2.7 56 58-116 306-375 (381)
47 2y1n_A E3 ubiquitin-protein li 96.0 0.0033 1.1E-07 60.3 3.1 48 60-114 332-379 (389)
48 1rmd_A RAG1; V(D)J recombinati 95.9 0.0041 1.4E-07 48.4 2.9 50 59-115 22-71 (116)
49 2kr4_A Ubiquitin conjugation f 95.9 0.0081 2.8E-07 45.0 4.3 51 56-114 10-60 (85)
50 4ap4_A E3 ubiquitin ligase RNF 95.5 0.0023 8E-08 49.7 -0.0 50 58-114 70-125 (133)
51 3l11_A E3 ubiquitin-protein li 95.4 0.002 6.7E-08 50.1 -0.7 49 59-114 14-62 (115)
52 2c2l_A CHIP, carboxy terminus 95.1 0.013 4.4E-07 50.9 3.4 49 59-114 207-255 (281)
53 2kre_A Ubiquitin conjugation f 95.0 0.015 5.1E-07 45.1 3.2 51 56-114 25-75 (100)
54 1wgm_A Ubiquitin conjugation f 94.7 0.03 1E-06 43.2 4.2 51 57-114 19-69 (98)
55 1jm7_B BARD1, BRCA1-associated 94.6 0.0082 2.8E-07 47.0 0.7 45 59-113 21-66 (117)
56 3knv_A TNF receptor-associated 94.1 0.009 3.1E-07 48.9 0.1 50 56-112 27-76 (141)
57 2yu4_A E3 SUMO-protein ligase 93.9 0.042 1.4E-06 41.6 3.5 49 57-111 4-59 (94)
58 4ic3_A E3 ubiquitin-protein li 93.9 0.01 3.5E-07 43.1 0.0 44 59-114 23-67 (74)
59 2vje_B MDM4 protein; proto-onc 93.9 0.016 5.4E-07 41.0 0.9 48 59-113 6-55 (63)
60 3hcs_A TNF receptor-associated 93.8 0.03 1E-06 46.2 2.6 51 57-114 15-65 (170)
61 2vje_A E3 ubiquitin-protein li 93.7 0.019 6.5E-07 40.7 1.1 48 59-113 7-56 (64)
62 3nw0_A Non-structural maintena 93.6 0.035 1.2E-06 49.5 3.0 50 59-114 179-229 (238)
63 1bor_A Transcription factor PM 93.5 0.017 5.9E-07 39.7 0.6 45 59-114 5-49 (56)
64 2f42_A STIP1 homology and U-bo 92.7 0.053 1.8E-06 46.7 2.5 50 58-114 104-153 (179)
65 1wim_A KIAA0161 protein; ring 92.2 0.065 2.2E-06 40.2 2.2 49 59-112 4-62 (94)
66 2ecg_A Baculoviral IAP repeat- 91.8 0.091 3.1E-06 37.9 2.5 44 59-114 24-68 (75)
67 2ea5_A Cell growth regulator w 91.6 0.19 6.4E-06 36.1 4.0 44 59-114 14-58 (68)
68 3t6p_A Baculoviral IAP repeat- 84.9 0.13 4.5E-06 48.2 -0.9 45 58-114 293-338 (345)
69 3htk_C E3 SUMO-protein ligase 84.3 0.44 1.5E-05 43.6 2.4 52 57-114 178-232 (267)
70 2lri_C Autoimmune regulator; Z 83.6 0.35 1.2E-05 35.1 1.1 50 57-112 9-60 (66)
71 2bay_A PRE-mRNA splicing facto 83.4 0.51 1.7E-05 33.3 1.9 46 61-114 4-50 (61)
72 2yho_A E3 ubiquitin-protein li 79.6 0.41 1.4E-05 35.2 0.2 43 60-114 18-61 (79)
73 1weu_A Inhibitor of growth fam 77.8 1.1 3.9E-05 34.5 2.3 51 56-112 32-86 (91)
74 1weo_A Cellulose synthase, cat 70.7 5.3 0.00018 31.1 4.5 53 59-114 15-70 (93)
75 1wen_A Inhibitor of growth fam 69.8 1 3.6E-05 32.9 0.3 50 57-112 13-66 (71)
76 2l43_A N-teminal domain from h 69.1 0.77 2.6E-05 34.9 -0.6 53 57-112 22-76 (88)
77 2ku3_A Bromodomain-containing 66.9 0.66 2.3E-05 34.0 -1.3 51 58-111 14-66 (71)
78 2ysm_A Myeloid/lymphoid or mix 59.3 1.4 4.8E-05 34.1 -0.8 39 57-98 4-42 (111)
79 2k16_A Transcription initiatio 58.9 0.94 3.2E-05 32.8 -1.8 53 58-113 16-70 (75)
80 1f62_A Transcription factor WS 56.0 2.2 7.4E-05 28.6 -0.2 46 62-110 2-49 (51)
81 2l5u_A Chromodomain-helicase-D 52.0 3.3 0.00011 29.0 0.2 48 58-111 9-58 (61)
82 2vnf_A ING 4, P29ING4, inhibit 51.6 1 3.5E-05 31.8 -2.6 47 58-110 8-58 (60)
83 2yql_A PHD finger protein 21A; 41.4 1.6 5.6E-05 30.0 -2.8 47 58-110 7-55 (56)
84 2ko5_A Ring finger protein Z; 41.0 9.1 0.00031 30.1 1.2 49 59-116 27-75 (99)
85 1wem_A Death associated transc 40.9 10 0.00036 27.3 1.4 51 60-114 16-73 (76)
86 2e6r_A Jumonji/ARID domain-con 40.4 1.9 6.4E-05 32.9 -2.9 51 58-111 14-66 (92)
87 2vpb_A Hpygo1, pygopus homolog 38.9 10 0.00036 27.0 1.1 34 57-93 5-40 (65)
88 3u5n_A E3 ubiquitin-protein li 38.8 2.3 7.7E-05 36.5 -2.9 49 59-113 6-56 (207)
89 1wev_A Riken cDNA 1110020M19; 38.2 1.8 6E-05 32.8 -3.3 53 59-114 15-75 (88)
90 2jwa_A Receptor tyrosine-prote 36.8 54 0.0018 22.1 4.3 29 211-240 14-42 (44)
91 2lbm_A Transcriptional regulat 35.7 19 0.00065 29.8 2.4 46 58-109 61-115 (142)
92 1wew_A DNA-binding family prot 34.2 41 0.0014 24.4 3.8 54 55-112 11-73 (78)
93 3ql9_A Transcriptional regulat 34.0 26 0.00091 28.4 2.9 46 58-109 55-109 (129)
94 1wep_A PHF8; structural genomi 33.2 35 0.0012 24.7 3.2 52 59-114 11-66 (79)
95 3kv5_D JMJC domain-containing 31.1 5.6 0.00019 38.9 -1.8 53 59-115 36-92 (488)
96 2lv9_A Histone-lysine N-methyl 31.1 8.3 0.00028 29.5 -0.5 49 58-110 26-75 (98)
97 6rxn_A Rubredoxin; electron tr 30.8 24 0.00083 23.8 1.9 26 102-130 4-29 (46)
98 2yt5_A Metal-response element- 30.6 3.2 0.00011 29.1 -2.8 51 58-111 4-61 (66)
99 3o36_A Transcription intermedi 29.8 5.2 0.00018 33.4 -2.1 48 60-113 4-53 (184)
100 2ri7_A Nucleosome-remodeling f 28.5 8.9 0.0003 31.5 -0.8 51 58-112 6-60 (174)
101 2jmi_A Protein YNG1, ING1 homo 27.3 4.6 0.00016 31.0 -2.6 47 58-110 24-75 (90)
102 1x4i_A Inhibitor of growth pro 27.0 8.8 0.0003 27.8 -1.0 51 58-112 4-56 (70)
103 3v43_A Histone acetyltransfera 25.8 28 0.00096 26.8 1.7 34 59-95 4-43 (112)
104 4rxn_A Rubredoxin; electron tr 25.1 33 0.0011 23.9 1.7 15 102-116 3-17 (54)
105 1mm2_A MI2-beta; PHD, zinc fin 25.0 7.9 0.00027 27.1 -1.5 47 59-111 8-56 (61)
106 4gne_A Histone-lysine N-methyl 24.2 12 0.00042 29.4 -0.7 46 58-109 13-60 (107)
107 3c6w_A P28ING5, inhibitor of g 24.2 3.3 0.00011 29.1 -3.6 47 58-110 7-57 (59)
108 1znf_A 31ST zinc finger from X 24.0 26 0.00089 18.1 0.9 12 103-114 2-13 (27)
109 2g6q_A Inhibitor of growth pro 23.8 3.4 0.00012 29.3 -3.6 47 58-110 9-59 (62)
110 1ard_A Yeast transcription fac 22.2 29 0.00099 18.1 0.8 12 103-114 3-14 (29)
111 1xwh_A Autoimmune regulator; P 22.0 5.2 0.00018 28.4 -3.0 48 58-111 6-55 (66)
112 2m0f_A Zinc finger and BTB dom 21.8 27 0.00091 18.2 0.6 12 103-114 3-14 (29)
113 3uon_A Human M2 muscarinic ace 21.5 2.2E+02 0.0077 24.9 7.0 24 209-232 186-209 (467)
114 1p1p_A AA-conotoxin PIVA; neur 21.3 34 0.0012 20.5 1.0 15 74-88 9-23 (26)
115 2rsd_A E3 SUMO-protein ligase 21.1 19 0.00066 25.4 -0.1 48 57-109 7-63 (68)
116 2jny_A Uncharacterized BCR; st 21.0 25 0.00087 25.4 0.5 32 74-115 10-41 (67)
117 2lvu_A Zinc finger and BTB dom 26.1 21 0.00072 18.6 0.0 12 103-114 3-14 (26)
118 2kvh_A Zinc finger and BTB dom 20.6 27 0.00093 18.2 0.5 13 102-114 3-15 (27)
119 1dx8_A Rubredoxin; electron tr 20.5 1.1E+02 0.0037 22.2 3.8 16 101-116 6-21 (70)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=4.8e-19 Score=128.47 Aligned_cols=55 Identities=31% Similarity=0.778 Sum_probs=50.1
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...||||+++.+ ++++.||+|+||+||||+.||++|++++++.+||+|+++|+.
T Consensus 5 ~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4679999998754 468999999999999999999999999999999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.4e-17 Score=124.18 Aligned_cols=64 Identities=34% Similarity=0.809 Sum_probs=55.1
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccccCCCC
Q 024242 58 RKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPP 121 (270)
Q Consensus 58 ~~~~~CRIC~e~~~-~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~yt~p~~ 121 (270)
.+...|+||+++.+ +++++.||+|+|+++++|+.||++|++.+++..|++|+++|....+.+|+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCC
Confidence 34578999998764 45789999999999999999999999999989999999999876655443
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.07 E-value=3.7e-06 Score=59.93 Aligned_cols=50 Identities=24% Similarity=0.614 Sum_probs=39.4
Q ss_pred CCCCeeeEeccCCCC--CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDAD--SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~--~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.....|.||++.... .....||. +.+|..|+.+|++.++ .|++|+.++..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccC
Confidence 456789999987543 34567875 6799999999998765 69999998865
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=6.7e-06 Score=59.31 Aligned_cols=50 Identities=20% Similarity=0.596 Sum_probs=38.4
Q ss_pred CCCCeeeEeccCCCCCC--cccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~--L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.....|.||++...+.. ...||. +.+|..|+.+|++.+. .|++|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 34568999999865432 234764 6899999999998765 89999998864
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.94 E-value=5e-06 Score=60.59 Aligned_cols=52 Identities=21% Similarity=0.673 Sum_probs=39.8
Q ss_pred CCCCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccc
Q 024242 58 RKLVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGY 116 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~--~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~y 116 (270)
.....|.||++...+. ....||. +.+|..|+.+|++.+ ..|++|+.++...-
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCcc
Confidence 4567899999886433 2446765 689999999999754 58999999986543
No 6
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.93 E-value=7.7e-06 Score=63.68 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=38.5
Q ss_pred CeeeEeccCCCCCC--------------c---ccccccCCCCccccHHHHHHHHHH---hCCccccccccccccc
Q 024242 61 VECRICQDEDADSN--------------M---ETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKPG 115 (270)
Q Consensus 61 ~~CRIC~e~~~~~~--------------L---~~PC~C~GSlk~vH~~CL~rWi~~---kg~~~CEICk~~y~~~ 115 (270)
..|-||++...+.. . ..||. +.+|..||.+|+.. ++...|++|+..|...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 58999998753211 1 56776 78999999999976 4567999999999754
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.81 E-value=8.3e-06 Score=55.34 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=38.4
Q ss_pred CCCeeeEeccCCCC---CCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDEDAD---SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~~~---~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
....|.||++...+ .....||. +.+|..|+.+|++.+ ..|++|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 45689999988532 35678875 689999999999987 68999998764
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.81 E-value=1.1e-05 Score=58.50 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=39.2
Q ss_pred CCCCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~--~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.+...|.||++...+. ....||. +.+|..|+.+|++.+ ..|++|++++.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 4567899999886433 2567875 689999999999875 489999988764
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=1.1e-05 Score=60.07 Aligned_cols=27 Identities=26% Similarity=0.753 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHHhCCcccccccccccc
Q 024242 86 KYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 86 k~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+..|..||.+|++.++ .|++|+++|..
T Consensus 50 H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQNN--RCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTCC--BCTTTCCBCCE
T ss_pred CccChHHHHHHHHhCC--CCCCcCCCcch
Confidence 7899999999998764 99999998853
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.67 E-value=3.6e-05 Score=54.41 Aligned_cols=49 Identities=24% Similarity=0.699 Sum_probs=39.4
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
....|.||++...+.....||. +..|..|+.+|++.+ ..|++|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 3468999998876544778876 679999999999765 489999998863
No 11
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.67 E-value=1e-05 Score=54.96 Aligned_cols=48 Identities=31% Similarity=0.693 Sum_probs=36.4
Q ss_pred CCCeeeEeccCCCC--CCcccc-cccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDEDAD--SNMETP-CSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~~~--~~L~~P-C~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
+...|-||++...+ .....| |. +..|..|+.+|++. +..|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 34689999988643 344555 54 68999999999976 458999998764
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.66 E-value=3e-05 Score=56.42 Aligned_cols=50 Identities=26% Similarity=0.502 Sum_probs=41.0
Q ss_pred CCCCeeeEeccCCCCCCcccc-cccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETP-CSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~P-C~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
.+...|.||++...+ +...| |. +..|+.|+.+|++.++...|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTD-AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTT-CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhC-CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 456789999887653 66677 65 7899999999999988889999999753
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=4.4e-05 Score=56.20 Aligned_cols=52 Identities=19% Similarity=0.540 Sum_probs=41.4
Q ss_pred CCCCeeeEeccCCCC---CCcccccccCCCCccccHHHHHHHHHHh-CCcccccccccccc
Q 024242 58 RKLVECRICQDEDAD---SNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~---~~L~~PC~C~GSlk~vH~~CL~rWi~~k-g~~~CEICk~~y~~ 114 (270)
.+...|.||++...+ .+...||. +.+|..|+.+|++.+ +...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456789999988643 25667875 789999999999886 46899999998864
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=1.5e-05 Score=56.02 Aligned_cols=50 Identities=22% Similarity=0.552 Sum_probs=38.4
Q ss_pred CCCCeeeEeccCCCC----C--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDAD----S--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~----~--~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.+...|-||++...+ . ....||. +.+|..|+.+|++. ...|++|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 456789999987422 1 2567775 68999999999987 4589999998753
No 15
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=3.6e-05 Score=55.05 Aligned_cols=52 Identities=19% Similarity=0.445 Sum_probs=40.9
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH-hCCcccccccccccc
Q 024242 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE-KGNTTCEICQQQFKP 114 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~-kg~~~CEICk~~y~~ 114 (270)
..+...|.||++...+ +...||. +.+|..|+.+|++. ++...|++|+.++..
T Consensus 17 ~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSS-EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCC-eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3456799999987653 5556775 67999999999985 457799999998853
No 16
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.63 E-value=2.8e-05 Score=58.90 Aligned_cols=50 Identities=34% Similarity=0.820 Sum_probs=39.2
Q ss_pred CCCCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~--~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+....|-||++...++ ....||. +.+|..|+.+|++.+ ..|++|++++.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 4567999999886433 3457865 689999999999754 499999998864
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=1.8e-05 Score=56.93 Aligned_cols=50 Identities=22% Similarity=0.475 Sum_probs=39.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (270)
.+...|.||++...+ +...||. +.+|..|+.+|+..+ ..|++|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH-PVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS-EEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC-CEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHh
Confidence 455789999987643 5667875 679999999999764 6999999998654
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00013 Score=52.93 Aligned_cols=51 Identities=22% Similarity=0.637 Sum_probs=41.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH----hCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE----KGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~----kg~~~CEICk~~y~~ 114 (270)
.+...|.||++...+ +...||. +.+|..|+.+|++. .+...|++|+..+..
T Consensus 17 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 456789999988654 5556775 67899999999987 357899999999864
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=2.1e-05 Score=56.04 Aligned_cols=48 Identities=31% Similarity=0.808 Sum_probs=39.8
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.+...|.||++...+ ...||. +.+|..|+.+|+. +...|++|++++..
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 456789999998765 778885 6799999999998 56799999998864
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.53 E-value=0.0001 Score=53.50 Aligned_cols=51 Identities=20% Similarity=0.541 Sum_probs=41.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh----CCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK----GNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~k----g~~~CEICk~~y~~ 114 (270)
.+...|.||++...+ +...||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 17 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKE-PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSS-CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCc-ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 446789999887643 5667865 679999999999984 47899999998864
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=5e-05 Score=56.99 Aligned_cols=52 Identities=17% Similarity=0.462 Sum_probs=39.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+....|-||++....+. .-+ .| -.-.|..||.+|++.+++.+|++|++.+..
T Consensus 13 ~~i~~C~IC~~~i~~g~-~C~-~C---~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ-SCE-TC---GIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSE-ECS-SS---CCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCC-ccC-CC---CchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34678999998864332 111 45 367899999999998877899999998864
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=5.6e-05 Score=53.46 Aligned_cols=51 Identities=16% Similarity=0.376 Sum_probs=39.6
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
..+...|.||++...+ +...||. +..|..|+.+|++ ++...|++|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS-PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESS-CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcC-eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 3456889999877643 4556776 6789999999997 456789999998754
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=8.1e-05 Score=53.60 Aligned_cols=50 Identities=20% Similarity=0.427 Sum_probs=38.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.+...|.||++...+.....||. +.+|..|+.+|++. ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHCcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 44678999988775532335876 67899999999976 4699999999864
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=0.00014 Score=53.39 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=39.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
.....|.||++...+ +...||. +.+|..|+.+|++. ...|++|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN-PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS-EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC-eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 456789999888654 6677876 67899999999975 459999999885
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00017 Score=50.36 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=36.1
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh-CCcccccc
Q 024242 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEIC 108 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~k-g~~~CEIC 108 (270)
..+...|.||++...+ +...||. +.+|+.|+.+|++.+ +...|++|
T Consensus 17 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS-CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC-eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456799999987654 5566775 679999999999864 56789988
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.40 E-value=3.1e-05 Score=54.94 Aligned_cols=50 Identities=22% Similarity=0.535 Sum_probs=38.7
Q ss_pred CCCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDAD------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~------~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.+...|-||++...+ .....||. +..|..|+.+|++.+ ..|++|+.++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 456789999987422 12567776 689999999999876 499999998864
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.37 E-value=0.00013 Score=54.64 Aligned_cols=50 Identities=24% Similarity=0.474 Sum_probs=41.5
Q ss_pred CCCCeeeEeccCCCCCCcccc-cccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETP-CSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~P-C~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
.+...|-||++... .+...| |. +..++.||.+|+..++...|++|+..+.
T Consensus 11 ~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS-SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc-CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45689999998765 466778 54 6789999999999888899999999873
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.32 E-value=3.6e-05 Score=53.33 Aligned_cols=49 Identities=22% Similarity=0.580 Sum_probs=37.6
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDAD------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~------~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|.||++...+ .....||. +..|..|+.+|++. +..|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 35689999987422 12567776 68999999999987 4599999998864
No 29
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.31 E-value=0.0001 Score=58.37 Aligned_cols=47 Identities=21% Similarity=0.587 Sum_probs=35.0
Q ss_pred CCeeeEeccCCCCC-----------------CcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 60 LVECRICQDEDADS-----------------NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 60 ~~~CRIC~e~~~~~-----------------~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
...|-||++...+. ....||. +..|..||.+|+.. +..|++|+.+|.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 35688888764322 1335665 78999999999986 458999999975
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.0002 Score=48.75 Aligned_cols=45 Identities=18% Similarity=0.655 Sum_probs=35.5
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH-hCCcccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE-KGNTTCEIC 108 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~-kg~~~CEIC 108 (270)
.+...|.||++...+ +...||. +..|..|+.+|++. ++...|++|
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 456789999988754 5567775 67999999999875 467789988
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.18 E-value=0.00019 Score=52.07 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=39.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.+...|.||++...+ +...||. +..++.|+.+|++. +...|++|+.++..
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC-CEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 456789999887653 6667765 68999999999974 56799999998864
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.12 E-value=0.00011 Score=53.04 Aligned_cols=51 Identities=22% Similarity=0.559 Sum_probs=40.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh-----CCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK-----GNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~k-----g~~~CEICk~~y~~ 114 (270)
.+...|.||++...+ +...||. +.+++.|+.+|++.+ +...|++|+.++..
T Consensus 10 ~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 456789999988654 5566775 678999999999873 47899999999864
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.95 E-value=0.00014 Score=58.87 Aligned_cols=47 Identities=21% Similarity=0.604 Sum_probs=0.4
Q ss_pred CCeeeEeccCCCCC-----------------CcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 60 LVECRICQDEDADS-----------------NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 60 ~~~CRIC~e~~~~~-----------------~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
...|-||++...+. .+..||. +..|..|+.+|++.+ ..|++|+.+|.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeee
Confidence 35799998775321 1123554 789999999999884 48999999975
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.93 E-value=0.00032 Score=53.86 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=40.2
Q ss_pred CCCeeeEeccCCCCCCcc-cccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNME-TPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~-~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|-||++...+ +.. .||. +..|..||.+|++.++ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 45789999988754 555 7876 6899999999999875 699999999854
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.83 E-value=0.00073 Score=47.46 Aligned_cols=49 Identities=18% Similarity=0.438 Sum_probs=36.5
Q ss_pred CCeeeEecc-CCCCC--C-cccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 60 LVECRICQD-EDADS--N-METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 60 ~~~CRIC~e-~~~~~--~-L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
...|-||++ ...+. . +..||. +.++..|+.+|+.. +...|++|+..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 457999998 32221 1 457876 67999999999874 46789999998864
No 36
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.80 E-value=0.00096 Score=49.84 Aligned_cols=53 Identities=26% Similarity=0.570 Sum_probs=41.8
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~-~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
++...|-||++... ......||.|. +.+++.|+.+|.+. +...|++|+..|..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 35578999999764 33567888883 67999999998754 56899999999964
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.79 E-value=0.00081 Score=51.57 Aligned_cols=49 Identities=24% Similarity=0.670 Sum_probs=39.0
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh-CCcccccccccccc
Q 024242 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEICQQQFKP 114 (270)
Q Consensus 60 ~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~k-g~~~CEICk~~y~~ 114 (270)
...|.||++...+ +...||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 21 ~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKE-PVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSS-CCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcC-eEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4589999887643 5567875 688999999999874 45799999998864
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.74 E-value=0.00087 Score=52.95 Aligned_cols=49 Identities=18% Similarity=0.449 Sum_probs=39.1
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|.||++...+ +...||. +..|+.|+.+|+. .+...|++|+..+..
T Consensus 51 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-PITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-cEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 34689999887653 6666875 6789999999998 455699999999864
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.72 E-value=0.0005 Score=52.17 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=37.8
Q ss_pred CCCeeeEeccCCCCCCcc-cccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNME-TPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~-~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|.||++...+ +.. .||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-cCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 35689999988754 433 3776 689999999999854 699999998864
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.63 E-value=0.00066 Score=56.18 Aligned_cols=48 Identities=25% Similarity=0.539 Sum_probs=37.7
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~-PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
....|-||++...+ +... ||. +.+|..|+.+|+.. +...|++|+..+.
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 34689999888654 4443 776 78999999999984 4678999999885
No 41
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.60 E-value=0.00051 Score=55.55 Aligned_cols=45 Identities=24% Similarity=0.724 Sum_probs=36.6
Q ss_pred CeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 61 VECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 61 ~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
..|.||++...+ +...||. +.+|..|+.+|+..+ ..|++|+.++.
T Consensus 54 ~~C~iC~~~~~~-~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCC
T ss_pred CCCcccCcccCC-ceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 479999987654 6667875 689999999999754 58999998875
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=53.83 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=39.7
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (270)
+...|.||++...+ +...||. +.+++.|+.+|+.. +...|++|+..+...
T Consensus 77 ~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC-CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 34689999887643 6667876 67899999999985 456899999998754
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.33 E-value=0.0006 Score=53.12 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=38.3
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDAD------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~------~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|-||++...+ .....||. +..|..|+.+|++.+. .|++|++.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCcc
Confidence 45789999987432 12667876 7899999999997654 99999999864
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.31 E-value=0.00092 Score=51.58 Aligned_cols=48 Identities=21% Similarity=0.487 Sum_probs=38.2
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~-PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|.||++...+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 45689999887654 5544 876 678999999999865 699999998764
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.30 E-value=0.0021 Score=50.46 Aligned_cols=51 Identities=20% Similarity=0.494 Sum_probs=40.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (270)
.+...|.||++...+ +...||. +..+..|+.+|++.++. .|++|+..+...
T Consensus 16 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC-eEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCHH
Confidence 456789999977653 5666765 67999999999987754 899999988653
No 46
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.05 E-value=0.0026 Score=60.74 Aligned_cols=56 Identities=20% Similarity=0.646 Sum_probs=41.1
Q ss_pred CCCCeeeEeccCCCC-CCc-ccccc---cCCCCccccHHHHHHHHHHhCC---------cccccccccccccc
Q 024242 58 RKLVECRICQDEDAD-SNM-ETPCS---CCGSLKYAHRRCVQRWCNEKGN---------TTCEICQQQFKPGY 116 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~-~~L-~~PC~---C~GSlk~vH~~CL~rWi~~kg~---------~~CEICk~~y~~~y 116 (270)
....+|-||++...+ +.+ ...|. |+ +..|..||.+|++..++ ..|+.|+++....|
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 457899999988644 333 34463 53 78999999999987532 58999999876544
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.97 E-value=0.0033 Score=60.29 Aligned_cols=48 Identities=23% Similarity=0.683 Sum_probs=39.0
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 60 ~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
...|.||++... .+...||. +..|..|+.+|+.. +...|++|+.++..
T Consensus 332 ~~~C~ICle~~~-~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK-DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC-CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC-CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 479999988764 36778987 45799999999984 45699999998864
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.93 E-value=0.0041 Score=48.39 Aligned_cols=50 Identities=30% Similarity=0.593 Sum_probs=39.6
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (270)
+...|.||++...+ +...||. +..+..|+.+|++.+ ...|++|+.++...
T Consensus 22 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILAD-PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcC-cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 35689999887653 5667775 678999999999875 35899999998653
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.89 E-value=0.0081 Score=45.01 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=40.2
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
...+...|-||++-..+ +...||. +..-+.|+++|+.. ..+|++|+.++..
T Consensus 10 ~~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTD-PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp TCCTTTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred cCchheECcccCchhcC-CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 34567899999887654 7788864 56789999999985 4689999998864
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.48 E-value=0.0023 Score=49.70 Aligned_cols=50 Identities=22% Similarity=0.551 Sum_probs=37.8
Q ss_pred CCCCeeeEeccCCCC----C--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDAD----S--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~----~--~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.+...|-||++...+ . ....||. +..|..|+.+|++.+. .|++|+..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHCS--BCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcCC--CCCCCCCcCCh
Confidence 456789999887422 1 2455664 7899999999998754 99999998864
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.39 E-value=0.002 Score=50.12 Aligned_cols=49 Identities=18% Similarity=0.552 Sum_probs=38.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|.||++...+ +...||. +..+..|+.+|+.. +...|++|+..+..
T Consensus 14 ~~~~C~iC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE-PVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS-CEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc-eeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 45689999987653 6666876 67999999999964 45799999999863
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.10 E-value=0.013 Score=50.91 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=39.1
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
..-.|-||++-..+ |.+.||. +-.-+.|+.+|+..++.. |++|+.++..
T Consensus 207 ~~~~c~i~~~~~~d-Pv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS-EEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred cccCCcCcCCHhcC-CeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 45789999887654 8888974 567799999999986644 9999998853
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=94.99 E-value=0.015 Score=45.08 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=40.2
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
...+...|-||++-..+ |...||. +..-+.|+.+|+.. ..+|++|+.++..
T Consensus 25 ~~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTD-PVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSS-EEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccC-CeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 34557899999887654 7888864 56889999999984 5699999998864
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=94.68 E-value=0.03 Score=43.23 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=39.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
..+...|-||++-..+ |...||. -+..-+.|+++|+.. ..+|++|+.++..
T Consensus 19 ~p~~~~CpI~~~~m~d-PV~~~cG----~htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD-PVVLPSS----RVTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSS-EEECTTT----CCEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccC-CeECCCC----CeEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 3457899999887654 7778865 145779999999986 4589999998864
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.57 E-value=0.0082 Score=46.96 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=36.5
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~-PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
+...|.||++...+ +... ||. +.+++.|+.+|+. ..|++|+..+.
T Consensus 21 ~~~~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC-ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 45789999887654 5555 875 7889999999987 68999999984
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.15 E-value=0.009 Score=48.94 Aligned_cols=50 Identities=14% Similarity=0.352 Sum_probs=38.7
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024242 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (270)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (270)
...+...|-||++...+ +...||. +..++.|+.+|++. +...|++|+.+.
T Consensus 27 ~l~~~~~C~IC~~~~~~-pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR-PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcC-cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 34566799999887654 5667766 67899999999964 456999999864
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.94 E-value=0.042 Score=41.61 Aligned_cols=49 Identities=14% Similarity=0.358 Sum_probs=38.2
Q ss_pred CCCCCeeeEeccCCCCCCcccc-cccCCCCccccHHHHHHHHHHh----CCccccc--cccc
Q 024242 57 PRKLVECRICQDEDADSNMETP-CSCCGSLKYAHRRCVQRWCNEK----GNTTCEI--CQQQ 111 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~P-C~C~GSlk~vH~~CL~rWi~~k----g~~~CEI--Ck~~ 111 (270)
......|-||++-..+ |...| |. +-.-+.|+.+|+... +..+|++ |...
T Consensus 4 ~~~~~~CPI~~~~~~d-PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK-PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSS-EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcC-CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3456789999877654 77775 75 567899999999875 4679999 8866
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=93.92 E-value=0.01 Score=43.11 Aligned_cols=44 Identities=20% Similarity=0.581 Sum_probs=35.3
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|.||++...+ +...||. +. ....|+.+| ..|++|+..+..
T Consensus 23 ~~~~C~iC~~~~~~-~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA-IVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC-EEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC-EEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 34689999987643 6667986 56 899999999 799999998853
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=93.86 E-value=0.016 Score=41.04 Aligned_cols=48 Identities=21% Similarity=0.580 Sum_probs=35.7
Q ss_pred CCCeeeEeccCCCCCC-cccccccCCCCcc-ccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDEDADSN-METPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~-L~~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
....|.||++...+.. +..||. +. +=..|+.+|.+.+ ..|++|+.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 4568999998765432 235987 44 6789999998654 69999999875
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=93.76 E-value=0.03 Score=46.19 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=39.8
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
..+.-.|-||++...+ +...||. +.+.+.|+.+|++.++. .|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcC-cEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcch
Confidence 3456789999887654 5666664 67899999999987653 99999998865
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=93.67 E-value=0.019 Score=40.71 Aligned_cols=48 Identities=21% Similarity=0.535 Sum_probs=34.6
Q ss_pred CCCeeeEeccCCCCCCc-ccccccCCCCcc-ccHHHHHHHHHHhCCccccccccccc
Q 024242 59 KLVECRICQDEDADSNM-ETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L-~~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (270)
+...|.||++...+..+ ..||. +. +=..|+.+|.+. +..|++|+.++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 34589999988754322 23986 34 348999999974 358999999875
No 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.63 E-value=0.035 Score=49.46 Aligned_cols=50 Identities=20% Similarity=0.570 Sum_probs=38.7
Q ss_pred CCCeeeEeccCCCCCCcccccc-cCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~-C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
....|-||.+--..+ .-|. |. ...|..|+.+|++.+++..|+.|+..+..
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 478999998765432 2232 53 58999999999998888999999998753
No 63
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.54 E-value=0.017 Score=39.67 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=34.5
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|.||++...+ +...||. +..+..|+.+| ...|++|++++..
T Consensus 5 ~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKC-PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBC-CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCC-eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 45679999887653 6778875 56789998773 5689999988753
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=92.66 E-value=0.053 Score=46.66 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=40.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.....|-||++-..+ |...||. +..=+.|+.+|+...+. +|++|+.++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 356789999887654 7778874 56789999999988665 79999998864
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.21 E-value=0.065 Score=40.17 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=37.3
Q ss_pred CCCeeeEeccCCCCCCcc--cccccCCCCccccHHHHHHHHHHh---C---Cccccc--ccccc
Q 024242 59 KLVECRICQDEDADSNME--TPCSCCGSLKYAHRRCVQRWCNEK---G---NTTCEI--CQQQF 112 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~--~PC~C~GSlk~vH~~CL~rWi~~k---g---~~~CEI--Ck~~y 112 (270)
+...|-||++......+. .||. +..-+.|+.+++..+ | ...|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 456899999886544443 4787 589999999999864 3 479999 99884
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.75 E-value=0.091 Score=37.88 Aligned_cols=44 Identities=20% Similarity=0.591 Sum_probs=33.4
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|.||++... ++...||. +. +...|+.+. ..|++|+.++..
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCC-----CHHHHHHHhhCC------CCCccCCceecC
Confidence 3468999988764 36678986 45 789998642 699999998854
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.61 E-value=0.19 Score=36.06 Aligned_cols=44 Identities=23% Similarity=0.575 Sum_probs=33.3
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
+...|.||++... .....||. +. +-..|+++ ...|++|+.++..
T Consensus 14 ~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTV-NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCC-CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCC-CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhc
Confidence 4578999988764 36778997 33 66788873 3699999998864
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=84.86 E-value=0.13 Score=48.20 Aligned_cols=45 Identities=24% Similarity=0.669 Sum_probs=35.8
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
.+...|.||++... ++...||. +. +...|+.+| ..|++|+..+..
T Consensus 293 ~~~~~C~IC~~~~~-~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEV-SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBC-CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCC-ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 34579999998764 36667987 45 889999998 689999998864
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=84.34 E-value=0.44 Score=43.58 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=39.7
Q ss_pred CCCCCeeeEeccCCCCCCcc-cccccCCCCccccHHHHHHHHHHhCCccccc--ccccccc
Q 024242 57 PRKLVECRICQDEDADSNME-TPCSCCGSLKYAHRRCVQRWCNEKGNTTCEI--CQQQFKP 114 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~-~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEI--Ck~~y~~ 114 (270)
......|-||++-..+ |.. ..|. +..=+.|+.+|+..++...|++ |++.+..
T Consensus 178 ~~~el~CPIcl~~f~D-PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEA-PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSS-EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccC-CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3566789999876643 444 2554 5678999999999878899999 9998754
No 70
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=83.61 E-value=0.35 Score=35.08 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=35.3
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccccc
Q 024242 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQF 112 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y 112 (270)
+.....|.||.+.+ .|+. |.+=-+..|..||.-.+.. ++.+.|..|...-
T Consensus 9 ~~~~~~C~vC~~~~---~ll~---Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDGT---DVLR---CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCCT---TCEE---CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCCC---eEEE---CCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 44557899997543 2332 3444589999999877765 5789999998653
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=83.37 E-value=0.51 Score=33.27 Aligned_cols=46 Identities=9% Similarity=0.207 Sum_probs=33.4
Q ss_pred CeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 61 VECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 61 ~~CRIC~e~~~~~~L~~-PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
..|.||++-..+ +.+. +|. .-.=+.|+++|++..+ +|+++++++..
T Consensus 4 ~~CpIs~~~m~d-PV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR-PVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS-EEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCCC-CEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 467788766543 5555 433 4678999999999776 59999988753
No 72
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=79.59 E-value=0.41 Score=35.16 Aligned_cols=43 Identities=19% Similarity=0.658 Sum_probs=32.6
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 024242 60 LVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 60 ~~~CRIC~e~~~~~~L~~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
...|.||++... .....||. +. +=..|+.+| ..|++|+.++..
T Consensus 18 ~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI-NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC-CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCE
T ss_pred CCEeEEeCcccC-cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhC
Confidence 358999988764 36678987 33 557898877 399999998864
No 73
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.84 E-value=1.1 Score=34.49 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=33.9
Q ss_pred CCCCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHH--hCCcccccccccc
Q 024242 56 TPRKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQF 112 (270)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~L~~--PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y 112 (270)
.+.+...| ||..... +.|+. =|.|. ..|.|..|+. +.. ++++.|+.|...-
T Consensus 32 d~~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34566788 9987653 34542 33353 2699999987 333 4789999997654
No 74
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=70.74 E-value=5.3 Score=31.13 Aligned_cols=53 Identities=26% Similarity=0.593 Sum_probs=36.7
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024242 59 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~---~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (270)
...+|.||-++- .++.+..-|+=-+ --|=+.|++.=.+ .++..|+.||.+|+-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~--FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG--FPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC--CCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC--ChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 457999998773 3455555554221 3477899876554 478899999999973
No 75
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.78 E-value=1 Score=32.93 Aligned_cols=50 Identities=24% Similarity=0.570 Sum_probs=32.8
Q ss_pred CCCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHH--hCCcccccccccc
Q 024242 57 PRKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQF 112 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~--PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y 112 (270)
+.+...| ||..... +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|...-
T Consensus 13 ~~~~~~C-~C~~~~~-g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSC-SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCC-CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3566788 8977653 45553 22243 2699999987 443 4789999997543
No 76
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=69.05 E-value=0.77 Score=34.91 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=34.3
Q ss_pred CCCCCeeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024242 57 PRKLVECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (270)
Q Consensus 57 ~~~~~~CRIC~e~~--~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (270)
..+...|.||...+ +++.|+ - |.+=-..+|..|+.-=..-+|.+.|..|...-
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll-~--CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVIL-F--CDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEE-E--CSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEE-E--CCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 34567899998775 223333 2 23334678999986433345789999997653
No 77
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=66.94 E-value=0.66 Score=34.03 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=33.2
Q ss_pred CCCCeeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccc
Q 024242 58 RKLVECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQ 111 (270)
Q Consensus 58 ~~~~~CRIC~e~~--~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~ 111 (270)
.+...|.||...+ +++.|+ - |++=-+.+|..|+.-=..-+|.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll-~--CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVIL-F--CDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEE-E--CSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEE-E--CCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4567899998775 333443 2 2333468999998633334578999998753
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=59.28 E-value=1.4 Score=34.10 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=26.6
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH
Q 024242 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN 98 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~ 98 (270)
..+...|.||.+.++.++|+ - |.+=-+..|..||.-...
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll-~--C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQF-F--CTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSE-E--CSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCe-E--CCCCCCCcChHHhCCccc
Confidence 34677999998877544444 2 234357899999976654
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=58.93 E-value=0.94 Score=32.80 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=34.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFK 113 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y~ 113 (270)
.+...|.||...++...|+. |.+=-.+.|..|+.--... .+.+.|+.|.....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567999987765444543 3444589999998643332 26789999976653
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=56.01 E-value=2.2 Score=28.59 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=29.5
Q ss_pred eeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 024242 62 ECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 110 (270)
Q Consensus 62 ~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~ 110 (270)
.|.||...++++.|+. |.+=-+..|..||.-=+.+ ++.+.|..|..
T Consensus 2 ~C~vC~~~~~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888887765444442 3344578999998532222 46788888864
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=52.04 E-value=3.3 Score=29.05 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=32.3
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQ 111 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~ 111 (270)
.....|.+|...+ .|+. |.+=-+..|..||.-=+.+ ++.+.|..|..+
T Consensus 9 ~~~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3457899998643 3332 3444579999998764432 578999999753
No 82
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=51.61 E-value=1 Score=31.80 Aligned_cols=47 Identities=23% Similarity=0.560 Sum_probs=29.8
Q ss_pred CCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 024242 58 RKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 110 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~--PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~ 110 (270)
++...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|..
T Consensus 8 ~e~~~C-~C~~~~~-g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC-CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 455677 8977653 44542 23342 2689999987 443 37888888864
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.36 E-value=1.6 Score=30.03 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=26.8
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 110 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~ 110 (270)
.+...|.+|...+ .|+. |.+=-+..|..||.-=+.. ++.+.|..|..
T Consensus 7 ~~~~~C~vC~~~g---~ll~---Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG---QLLM---CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS---CCEE---CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCC---eEEE---cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456799997653 2321 3344477888886532222 35666666643
No 84
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=40.97 E-value=9.1 Score=30.14 Aligned_cols=49 Identities=18% Similarity=0.429 Sum_probs=35.5
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGY 116 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~y 116 (270)
..-.|+.|+-+.. .|+ -|+ -+|.=..||..-+..++ .|+||+++.....
T Consensus 27 G~~nCKsCWf~~k--~LV-~C~----dHYLCl~CLtlmL~~Sd--rCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLV-ECN----NHYLCLNCLTLLLSVSN--RCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCS--SEE-ECS----SCEEEHHHHHHTCSSSS--EETTTTEECCCCS
T ss_pred CcccChhhccccC--Cee-eec----chhhHHHHHHHHHhhcc--CCcccCCcCCcce
Confidence 4567999987764 444 233 48999999887776655 9999999886544
No 85
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=40.89 E-value=10 Score=27.28 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=33.6
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH-------HhCCcccccccccccc
Q 024242 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN-------EKGNTTCEICQQQFKP 114 (270)
Q Consensus 60 ~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~-------~kg~~~CEICk~~y~~ 114 (270)
...| ||........|+.==.| -.|.|..|+.-=.. ......|+.|.....+
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C---~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRC---EEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSS---CCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCCCEEEeCCC---CCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 5677 88777654566542245 38999999843221 2468999999876543
No 86
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.40 E-value=1.9 Score=32.95 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH--HhCCccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN--EKGNTTCEICQQQ 111 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~--~kg~~~CEICk~~ 111 (270)
.+...|.||....+++.|+ - |.+=-+..|..||.-=+. -++.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll-~--CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLL-F--CDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCE-E--CTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEE-E--cCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456799998776433333 1 233346899999752222 2478899999754
No 87
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=38.87 E-value=10 Score=27.04 Aligned_cols=34 Identities=35% Similarity=0.752 Sum_probs=20.1
Q ss_pred CCCCCeeeEeccCCCCCCccccc--ccCCCCccccHHHH
Q 024242 57 PRKLVECRICQDEDADSNMETPC--SCCGSLKYAHRRCV 93 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC--~C~GSlk~vH~~CL 93 (270)
+.....|-+|.....++..---| .| .+|.|..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C---~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASC---QKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTT---CCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCc---cccCchhcc
Confidence 34556899998875433222233 34 489999997
No 88
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=38.77 E-value=2.3 Score=36.46 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=34.4
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFK 113 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y~ 113 (270)
....|.+|..+++ ++ - |.|--+..|..||.-.+.. +|.+.|..|...-+
T Consensus 6 ~~~~C~~C~~~g~---ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGGD---LL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCEE---EE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCc---eE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3467999976542 32 1 5555689999998655543 57899999987654
No 89
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.22 E-value=1.8 Score=32.78 Aligned_cols=53 Identities=17% Similarity=0.392 Sum_probs=36.6
Q ss_pred CCCeeeEeccCCC--CCCcccccccCCCCccccHHHHHHHHH------HhCCcccccccccccc
Q 024242 59 KLVECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWCN------EKGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~--~~~L~~PC~C~GSlk~vH~~CL~rWi~------~kg~~~CEICk~~y~~ 114 (270)
....|.+|...+. ++.|+. |.+=-+..|+.|+.-=+. -++.+.|..|....+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4578999987754 244443 333347889999875543 3578999999877653
No 90
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=36.83 E-value=54 Score=22.12 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=17.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q 024242 211 LFLRTAGIVLPIYVMVKAVTALQRHRYQQV 240 (270)
Q Consensus 211 ~~Lr~agillP~yi~~~a~~~~q~~r~~~~ 240 (270)
....+.| +|-+.|++-.+-.+-|||++++
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred hHHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence 3455566 3435566666667777777663
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=35.73 E-value=19 Score=29.76 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=33.1
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH---------HhCCccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN---------EKGNTTCEICQ 109 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~---------~kg~~~CEICk 109 (270)
+....|++|.++++ |+ .|.+=.+-.|..||..=+. ..+.+.|..|.
T Consensus 61 g~~d~C~vC~~GG~---Ll---cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 61 GMDEQCRWCAEGGN---LI---CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp SCBCSCSSSCCCSS---EE---ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCeecccCCCCc---EE---eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 45679999987763 22 1233357899999997652 46899999996
No 92
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=34.18 E-value=41 Score=24.37 Aligned_cols=54 Identities=24% Similarity=0.411 Sum_probs=33.5
Q ss_pred CCCCCCCeeeEeccCCCCCCccccc--ccCCCCccccHHHHHHHHHH-------hCCcccccccccc
Q 024242 55 STPRKLVECRICQDEDADSNMETPC--SCCGSLKYAHRRCVQRWCNE-------KGNTTCEICQQQF 112 (270)
Q Consensus 55 ~~~~~~~~CRIC~e~~~~~~L~~PC--~C~GSlk~vH~~CL~rWi~~-------kg~~~CEICk~~y 112 (270)
..+.....| ||...++++.|+.== .|. .|.|-.|+.-=-.. .....|+.|+..-
T Consensus 11 ~~~~~~~~C-iC~~~~~~g~MI~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLETDSMIQCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp SSCCCCCCC-SSCCCCCCSCEEECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred cCCCCCEEe-ECCCcCCCCCEEEECCccCC---ccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 334567888 898875555665311 354 59999997432111 1468898887643
No 93
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=33.95 E-value=26 Score=28.45 Aligned_cols=46 Identities=22% Similarity=0.446 Sum_probs=32.6
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHH------H---HhCCccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWC------N---EKGNTTCEICQ 109 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi------~---~kg~~~CEICk 109 (270)
+....|++|.++++ |+ -|++-.+-.|.+||.+=+ + .++.+.|-.|.
T Consensus 55 g~~~~C~vC~dGG~---Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 55 GMDEQCRWCAEGGN---LI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp SCBSSCTTTCCCSE---EE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCcCeecCCCCe---eE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 45678999987643 22 234556899999999752 2 36889999994
No 94
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.24 E-value=35 Score=24.71 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=34.1
Q ss_pred CCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccccc
Q 024242 59 KLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKP 114 (270)
Q Consensus 59 ~~~~CRIC~e~~~-~~~L~~PC~C~GSlk~vH~~CL~rWi~~---kg~~~CEICk~~y~~ 114 (270)
+...| ||....+ +..|+.==.| -.|.|..|+.-=-.. .....|+.|.....+
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLC---QDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTT---CCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCCC---CCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 45667 8877653 4566543345 389999998643322 257899999877643
No 95
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=31.14 E-value=5.6 Score=38.85 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=33.9
Q ss_pred CCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHHh---CCccccccccccccc
Q 024242 59 KLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEK---GNTTCEICQQQFKPG 115 (270)
Q Consensus 59 ~~~~CRIC~e~~~-~~~L~~PC~C~GSlk~vH~~CL~rWi~~k---g~~~CEICk~~y~~~ 115 (270)
+...| ||....+ ++.|+.=-.|. .|.|..|+.-=-... +...|+.|.....+.
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 92 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSS 92 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSC
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCcCcc
Confidence 34555 8876643 55676644564 899999985322221 468999999765443
No 96
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=31.08 E-value=8.3 Score=29.50 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=31.1
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH-HhCCcccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN-EKGNTTCEICQQ 110 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~-~kg~~~CEICk~ 110 (270)
.+.+.| ||....+++.|+. |.+=-++.|..|+.-=.. ..+.+.|+.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~---Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMIC---CDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEE---BTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEE---cCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345677 8876666666664 333358999999753111 124689999963
No 97
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=30.79 E-value=24 Score=23.82 Aligned_cols=26 Identities=19% Similarity=0.635 Sum_probs=17.0
Q ss_pred CcccccccccccccccCCCCccccccccc
Q 024242 102 NTTCEICQQQFKPGYTAPPPLFQFGNIPM 130 (270)
Q Consensus 102 ~~~CEICk~~y~~~yt~p~~~~~~~~~~i 130 (270)
...|.+|++.|.+..-.| ..+.++|-
T Consensus 4 ~y~C~vCGyvyd~~~Gd~---t~f~~lP~ 29 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN---VPFDQLPD 29 (46)
T ss_dssp CEEETTTCCEECGGGGTT---CCGGGSCT
T ss_pred EEECCCCCeEEeCCcCCC---cchhhCCC
Confidence 468999999998654444 23455554
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=30.63 E-value=3.2 Score=29.11 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=33.0
Q ss_pred CCCCeeeEeccCCC--CCCcccccccCCCCccccHHHHHHHH-----HHhCCccccccccc
Q 024242 58 RKLVECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWC-----NEKGNTTCEICQQQ 111 (270)
Q Consensus 58 ~~~~~CRIC~e~~~--~~~L~~PC~C~GSlk~vH~~CL~rWi-----~~kg~~~CEICk~~ 111 (270)
.+...|.+|..... ++.|+. |.+=-+.+|..|+.-=+ ..++.+.|..|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999987642 234432 33444788999986433 23578899888654
No 99
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=29.83 E-value=5.2 Score=33.41 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=33.1
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccccc
Q 024242 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFK 113 (270)
Q Consensus 60 ~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y~ 113 (270)
...|.+|..+++ ++ .|.+--+..|..|+.--+.. +|.+.|..|...=+
T Consensus 4 ~~~C~~C~~~g~---ll---~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNGGE---LL---CCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCCSS---CE---ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCCCe---ee---ecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 457999986543 32 24455688999998655543 57899999986543
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=28.49 E-value=8.9 Score=31.49 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=33.8
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccc
Q 024242 58 RKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQF 112 (270)
Q Consensus 58 ~~~~~CRIC~e~~~-~~~L~~PC~C~GSlk~vH~~CL~rWi~~---kg~~~CEICk~~y 112 (270)
.+...| +|....+ .+.|+.=-.| -.|.|..|+.---.. .+...|+.|...-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 356788 9987653 4456543344 489999998532222 4689999998654
No 101
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=27.31 E-value=4.6 Score=31.01 Aligned_cols=47 Identities=26% Similarity=0.601 Sum_probs=31.1
Q ss_pred CCCCeeeEeccCCCCCCcc--cccccCCCCccccHHHHHHHHHH--hCCccccc-ccc
Q 024242 58 RKLVECRICQDEDADSNME--TPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEI-CQQ 110 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~--~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEI-Ck~ 110 (270)
.+...| ||...+. +.|+ .=|.|. ..|.|..|+. +.. ++.+.|+. |..
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~--~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACP--FEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCS--CSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCc--cccCcCccCC--CCcCCCCCccCChhhcc
Confidence 456788 8976543 3454 334454 3799999986 332 47899999 874
No 102
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.97 E-value=8.8 Score=27.80 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=30.9
Q ss_pred CCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024242 58 RKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~--PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (270)
++...| ||...+. +.|+. =|.|. ..+.|..|+.-=-...+.+.|+.|....
T Consensus 4 ~~~~yC-~C~~~~~-g~MI~CD~cdC~--~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 4 GSSGYC-ICNQVSY-GEMVGCDNQDCP--IEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp SCCCCS-TTSCCCC-SSEECCSCTTCS--CCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCeEE-EcCCCCC-CCEeEeCCCCCC--ccCCcccccccCcCCCCCEECCCCCccc
Confidence 455667 4766543 35542 33342 4799999986211124678999997654
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=25.76 E-value=28 Score=26.84 Aligned_cols=34 Identities=18% Similarity=0.460 Sum_probs=21.7
Q ss_pred CCCeeeEeccCCC------CCCcccccccCCCCccccHHHHHH
Q 024242 59 KLVECRICQDEDA------DSNMETPCSCCGSLKYAHRRCVQR 95 (270)
Q Consensus 59 ~~~~CRIC~e~~~------~~~L~~PC~C~GSlk~vH~~CL~r 95 (270)
....|.+|+..+. .++|+ .|.+=-+..|..||.-
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll---~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI---SCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE---ECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhce---EhhhcCCCCCCchhcC
Confidence 3468999987642 12454 2344457899999963
No 104
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.10 E-value=33 Score=23.93 Aligned_cols=15 Identities=27% Similarity=0.720 Sum_probs=12.1
Q ss_pred Ccccccccccccccc
Q 024242 102 NTTCEICQQQFKPGY 116 (270)
Q Consensus 102 ~~~CEICk~~y~~~y 116 (270)
...|.+|++.|.+..
T Consensus 3 ~y~C~vCGyvYd~~~ 17 (54)
T 4rxn_A 3 KYTCTVCGYIYDPED 17 (54)
T ss_dssp CEEETTTCCEECTTT
T ss_pred ceECCCCCeEECCCc
Confidence 468999999997654
No 105
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=24.97 E-value=7.9 Score=27.06 Aligned_cols=47 Identities=23% Similarity=0.500 Sum_probs=29.3
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccc
Q 024242 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQ 111 (270)
Q Consensus 59 ~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~ 111 (270)
+...|.+|...+ .|+ .|.+=-+..|..||.-=+.+ ++.+.|..|..+
T Consensus 8 ~~~~C~vC~~~g---~ll---~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGG---ELL---CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCS---SCB---CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCCC---CEE---EcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456799997643 222 13333467899997643332 467888888643
No 106
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=24.24 E-value=12 Score=29.41 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=28.2
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQ 109 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk 109 (270)
.+...|.+|.+.+ . ..-|..++-.+..|..||. +.. +|++.|+-|.
T Consensus 13 ~~~~~C~~C~~~G---~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCGDGG---E-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTCCCS---E-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCcCCCCC---c-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 4556899997432 2 3345422335799999997 443 4666666443
No 107
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.20 E-value=3.3 Score=29.07 Aligned_cols=47 Identities=26% Similarity=0.542 Sum_probs=29.2
Q ss_pred CCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 024242 58 RKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 110 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~--PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~ 110 (270)
++...| ||...+. +.|+. -|.|. ..+.|.+|+. +.. ++++.|+.|..
T Consensus 7 ~e~~yC-~C~~~~~-g~mi~CD~~~C~--~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-GEMIGCDNPDCP--IEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-CCeeEeeCCCCC--CCCEecccCC--cccCCCCCEECcCccC
Confidence 345677 8877543 44542 23342 2699999987 433 36788888864
No 108
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.04 E-value=26 Score=18.10 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.4
Q ss_pred cccccccccccc
Q 024242 103 TTCEICQQQFKP 114 (270)
Q Consensus 103 ~~CEICk~~y~~ 114 (270)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999998863
No 109
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.84 E-value=3.4 Score=29.32 Aligned_cols=47 Identities=23% Similarity=0.516 Sum_probs=29.3
Q ss_pred CCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 024242 58 RKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 110 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~--PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~ 110 (270)
++...| ||...+. +.|+. -|.|. ..+.|.+|+. +.. ++.+.|+.|..
T Consensus 9 ~e~~yC-~C~~~~~-g~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY-GEMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCC-CCeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 455677 8877543 34543 23353 3799999987 332 46788888864
No 110
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.18 E-value=29 Score=18.11 Aligned_cols=12 Identities=33% Similarity=0.957 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 024242 103 TTCEICQQQFKP 114 (270)
Q Consensus 103 ~~CEICk~~y~~ 114 (270)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 579999998863
No 111
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=22.00 E-value=5.2 Score=28.39 Aligned_cols=48 Identities=27% Similarity=0.580 Sum_probs=30.5
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccc
Q 024242 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQ 111 (270)
Q Consensus 58 ~~~~~CRIC~e~~~~~~L~~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~ 111 (270)
.+...|.+|...+ .|+ .|.+=-+..|..||.-=+.. ++.+.|..|...
T Consensus 6 ~~~~~C~vC~~~g---~ll---~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGG---ELI---CCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCS---SCE---ECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCC---CEE---EcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3567899998653 232 13344578899997643322 467888888643
No 112
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.76 E-value=27 Score=18.18 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=9.4
Q ss_pred cccccccccccc
Q 024242 103 TTCEICQQQFKP 114 (270)
Q Consensus 103 ~~CEICk~~y~~ 114 (270)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 579999988853
No 113
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=21.55 E-value=2.2e+02 Score=24.92 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Q 024242 209 FLLFLRTAGIVLPIYVMVKAVTAL 232 (270)
Q Consensus 209 f~~~Lr~agillP~yi~~~a~~~~ 232 (270)
+.+++-..++++|+.+|+-.-..+
T Consensus 186 ~~~~~~~~~~~~p~~ii~~~y~~I 209 (467)
T 3uon_A 186 VTFGTAIAAFYLPVIIMTVLYWHI 209 (467)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555678889988887773333
No 114
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=21.31 E-value=34 Score=20.51 Aligned_cols=15 Identities=33% Similarity=0.704 Sum_probs=11.5
Q ss_pred CcccccccCCCCccc
Q 024242 74 NMETPCSCCGSLKYA 88 (270)
Q Consensus 74 ~L~~PC~C~GSlk~v 88 (270)
.-..||.|+|-..|-
T Consensus 9 aachpc~c~~rp~yc 23 (26)
T 1p1p_A 9 AACHPCSCKDRPSYC 23 (26)
T ss_dssp SSCCTTTSTTCCGGG
T ss_pred ccccccccCCCCCcc
Confidence 457899999876664
No 115
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=21.11 E-value=19 Score=25.45 Aligned_cols=48 Identities=29% Similarity=0.631 Sum_probs=28.3
Q ss_pred CCCCCeeeEeccCCCCCCccccc---ccCCCCccccHHHHHHHHHHh------CCccccccc
Q 024242 57 PRKLVECRICQDEDADSNMETPC---SCCGSLKYAHRRCVQRWCNEK------GNTTCEICQ 109 (270)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~L~~PC---~C~GSlk~vH~~CL~rWi~~k------g~~~CEICk 109 (270)
+++.+.| ||....+++.|+. | .|+ .|.|-.|+.-=-... ....|+.|+
T Consensus 7 ~e~~v~C-~C~~~~~~g~mI~-CD~~~C~---~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 7 PEAKVRC-ICSSTMVNDSMIQ-CEDQRCQ---VWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp SSCEECC-TTCCCSCCSCEEE-CSCTTTC---EEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred CCCCEEe-ECCCCcCCCCEEE-ECCCCCC---CeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 3455677 8876655556653 4 464 699999963110111 246788776
No 116
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.97 E-value=25 Score=25.45 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=23.5
Q ss_pred CcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024242 74 NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (270)
Q Consensus 74 ~L~~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (270)
.|..| .|+|.+.|.- .+|...|+-|+..|.+.
T Consensus 10 iL~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 10 VLACP-KDKGPLRYLE---------SEQLLVNERLNLAYRID 41 (67)
T ss_dssp CCBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEE
T ss_pred HhCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCC
Confidence 45666 7888877642 35778999999999754
No 117
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.13 E-value=21 Score=18.55 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 024242 103 TTCEICQQQFKP 114 (270)
Q Consensus 103 ~~CEICk~~y~~ 114 (270)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 479999998864
No 118
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.58 E-value=27 Score=18.24 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=10.1
Q ss_pred Ccccccccccccc
Q 024242 102 NTTCEICQQQFKP 114 (270)
Q Consensus 102 ~~~CEICk~~y~~ 114 (270)
...|+.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 3579999998863
No 119
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.49 E-value=1.1e+02 Score=22.22 Aligned_cols=16 Identities=31% Similarity=0.783 Sum_probs=12.7
Q ss_pred CCcccccccccccccc
Q 024242 101 GNTTCEICQQQFKPGY 116 (270)
Q Consensus 101 g~~~CEICk~~y~~~y 116 (270)
....|.+|++.|.+.-
T Consensus 6 ~~y~C~vCGyiYd~~~ 21 (70)
T 1dx8_A 6 GKYECEACGYIYEPEK 21 (70)
T ss_dssp SCEEETTTCCEECTTT
T ss_pred ceEEeCCCCEEEcCCC
Confidence 3578999999997654
Done!