BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024243
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17A75|FICD_AEDAE Adenosine monophosphate-protein transferase FICD homolog OS=Aedes
aegypti GN=AAEL005383 PE=3 SV=1
Length = 499
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 172 KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS 228
KA A+ +SP +L+ YG+ + + +D RA+ Y+ QA+ P LA+
Sbjct: 144 KAARLFQHALALSPKHPEILTKYGEFLEHNQQDVVRADHYYYQALTVNPSHSEALAN 200
>sp|B0W429|FICD_CULQU Adenosine monophosphate-protein transferase FICD homolog OS=Culex
quinquefasciatus GN=CPIJ001789 PE=3 SV=1
Length = 500
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
+Q + PR+P +L+ Y FL+ ++ D++ A+ Y +A+ ++P+ L+
Sbjct: 145 FQHAMALSPRHPEILTKYGEFLEHSQQDIVTADHYYYQALTVNPSHSEALA 195
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 172 KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS 228
KA A+ +SP +L+ YG+ + S +D A+ Y+ QA+ P LA+
Sbjct: 140 KALRLFQHAMALSPRHPEILTKYGEFLEHSQQDIVTADHYYYQALTVNPSHSEALAN 196
>sp|Q64112|IFIT2_MOUSE Interferon-induced protein with tetratricopeptide repeats 2 OS=Mus
musculus GN=Ifit2 PE=1 SV=1
Length = 472
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 120 DGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCA- 178
D + W + N + +QK ++ DP+NP S +A + R D A YC
Sbjct: 139 DCEEGWARLKCTKNQNERVKVCFQKALEKDPKNPEFTSGWA--IAFYRLDDWPARNYCID 196
Query: 179 ---RAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHF--- 232
+AI +SP++ V + + H ++A + ++A+K P L A F
Sbjct: 197 SLEQAIQLSPDNTYVKVLLALKLDAVHVHKNQAMALVEEALKKDPSAIDTLLRAARFYCK 256
Query: 233 LWDAD 237
++D D
Sbjct: 257 VYDTD 261
>sp|B3MK83|FICD_DROAN Adenosine monophosphate-protein transferase FICD homolog
OS=Drosophila ananassae GN=GF14521 PE=3 SV=1
Length = 497
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
+Q + PR+P +L Y FL+ ++ +++ A++Y +A+ +SP++ L+
Sbjct: 146 FQHSLALAPRHPTVLLRYGEFLEHSQRNIVLADQYYFQALSISPSNSEALA 196
>sp|Q9V3X5|TMTC2_DROME Transmembrane and TPR repeat-containing protein CG4341
OS=Drosophila melanogaster GN=CG4341 PE=2 SV=1
Length = 938
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 162 FLKEARGDLL-------KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214
L + GD+L +AE + A+ + PN YG + ++ AS AE +F +
Sbjct: 754 ILYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNSSRASEAEMWFKR 813
Query: 215 AVKAAPDDCYVLASHAHFLWDADEDEED---EQVGEEPAPPSYNF 256
A+K AP+ V +A FL E + E AP Y
Sbjct: 814 ALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTL 858
>sp|Q60462|IFIT2_CRIGR Interferon-induced protein with tetratricopeptide repeats 2
OS=Cricetulus griseus GN=IFIT2 PE=2 SV=1
Length = 468
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 120 DGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCA- 178
D + W + N + ++K ++ DP+NP S +A + R D A++
Sbjct: 139 DCEEGWARLKCTRNQNERVKVCFEKALEKDPKNPEFTSGWA--ISNYRLDFWPAQQNAVD 196
Query: 179 ---RAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234
+AI MSPN V + + + ++ + + ++A++ AP + VL S A F +
Sbjct: 197 SLKQAIRMSPNSPYVKVLLALKLEMNQEN--QGKELVEEALREAPGETDVLRSAARFYY 253
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 137 STDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD 196
S + ++ +Q P N + NYA FLK+ +G +A + A+ + P + L+ G
Sbjct: 527 SRESLFRSGVQTLPHNAKVHYNYANFLKD-QGRNKEAIYHYRTALKLYPRHASALNNLGT 585
Query: 197 LIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248
L KD + A+ Y+ +A++ P L + + L ++ EE + +E
Sbjct: 586 LT----KDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKE 633
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,027,166
Number of Sequences: 539616
Number of extensions: 5517160
Number of successful extensions: 48550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 30445
Number of HSP's gapped (non-prelim): 10709
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)