Query 024243
Match_columns 270
No_of_seqs 202 out of 2000
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:08:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10370 formate-dependent nit 99.6 2.5E-14 5.4E-19 124.7 14.6 123 132-255 52-177 (198)
2 PRK15359 type III secretion sy 99.6 3E-14 6.4E-19 118.0 12.6 105 130-236 35-139 (144)
3 KOG4626 O-linked N-acetylgluco 99.5 4.7E-14 1E-18 138.3 11.9 129 128-258 295-423 (966)
4 COG3063 PilF Tfp pilus assembl 99.5 9E-14 1.9E-18 122.7 10.5 126 129-256 45-172 (250)
5 KOG0553 TPR repeat-containing 99.5 1.4E-13 3E-18 125.4 11.5 107 132-240 94-200 (304)
6 PRK15359 type III secretion sy 99.5 1.1E-13 2.4E-18 114.5 9.9 113 138-255 12-124 (144)
7 KOG4626 O-linked N-acetylgluco 99.5 8E-14 1.7E-18 136.7 8.9 127 131-259 366-492 (966)
8 PRK12370 invasion protein regu 99.5 8.1E-13 1.8E-17 131.2 14.0 116 131-248 316-431 (553)
9 TIGR00990 3a0801s09 mitochondr 99.4 7.4E-13 1.6E-17 132.6 13.1 119 127-247 339-457 (615)
10 COG3063 PilF Tfp pilus assembl 99.4 7.4E-13 1.6E-17 117.0 10.3 119 127-248 77-198 (250)
11 TIGR00990 3a0801s09 mitochondr 99.4 1.6E-12 3.5E-17 130.2 13.8 119 128-248 374-492 (615)
12 TIGR02552 LcrH_SycD type III s 99.4 1.5E-12 3.2E-17 104.6 10.8 107 140-248 4-110 (135)
13 PRK11189 lipoprotein NlpI; Pro 99.4 2.8E-12 6E-17 117.9 13.7 116 128-246 73-188 (296)
14 PRK12370 invasion protein regu 99.4 3E-12 6.6E-17 127.2 13.7 120 128-249 347-467 (553)
15 PLN03088 SGT1, suppressor of 99.4 7.1E-12 1.5E-16 118.4 14.1 105 131-237 14-118 (356)
16 PRK09782 bacteriophage N4 rece 99.4 7.3E-12 1.6E-16 131.7 14.8 120 133-255 590-709 (987)
17 KOG1126 DNA-binding cell divis 99.4 4.6E-13 1E-17 131.9 5.1 122 125-248 427-548 (638)
18 PRK10370 formate-dependent nit 99.4 9.3E-12 2E-16 108.5 12.5 98 127-225 81-180 (198)
19 TIGR02552 LcrH_SycD type III s 99.3 1.9E-11 4.1E-16 98.1 12.6 100 127-228 25-124 (135)
20 TIGR02521 type_IV_pilW type IV 99.3 1.5E-11 3.3E-16 103.9 12.6 119 127-247 39-159 (234)
21 KOG1126 DNA-binding cell divis 99.3 1.4E-12 3.1E-17 128.5 6.8 123 130-254 466-588 (638)
22 TIGR02521 type_IV_pilW type IV 99.3 3E-11 6.5E-16 102.0 13.9 120 127-248 73-194 (234)
23 PF13429 TPR_15: Tetratricopep 99.3 2.8E-12 6.1E-17 116.0 7.6 121 125-247 152-272 (280)
24 PRK15174 Vi polysaccharide exp 99.3 1.7E-11 3.7E-16 124.3 13.0 120 127-248 220-343 (656)
25 PRK11189 lipoprotein NlpI; Pro 99.3 3.5E-11 7.5E-16 110.7 13.2 114 133-248 40-157 (296)
26 TIGR02917 PEP_TPR_lipo putativ 99.3 5.1E-11 1.1E-15 119.6 13.5 113 130-245 781-893 (899)
27 KOG1155 Anaphase-promoting com 99.3 3.8E-11 8.2E-16 114.8 11.8 117 127-245 338-454 (559)
28 PRK15179 Vi polysaccharide bio 99.3 8.1E-11 1.8E-15 119.8 14.8 113 131-245 98-210 (694)
29 PRK15363 pathogenicity island 99.3 1.1E-10 2.5E-15 98.1 13.2 86 132-219 48-133 (157)
30 PRK15174 Vi polysaccharide exp 99.2 6.7E-11 1.5E-15 120.0 12.8 119 128-248 255-377 (656)
31 PRK09782 bacteriophage N4 rece 99.2 8.6E-11 1.9E-15 123.7 12.7 116 127-244 617-732 (987)
32 PRK11447 cellulose synthase su 99.2 1.4E-10 3E-15 124.3 14.0 119 129-248 361-520 (1157)
33 PF13414 TPR_11: TPR repeat; P 99.2 9.9E-11 2.1E-15 83.8 8.6 68 151-220 1-69 (69)
34 PRK11447 cellulose synthase su 99.2 1.4E-10 3E-15 124.2 13.1 120 127-248 277-410 (1157)
35 PRK15363 pathogenicity island 99.2 2.5E-10 5.3E-15 96.1 11.6 99 145-245 26-125 (157)
36 COG5010 TadD Flp pilus assembl 99.2 3.5E-10 7.6E-15 101.5 13.2 114 130-245 111-224 (257)
37 TIGR02795 tol_pal_ybgF tol-pal 99.2 4.7E-10 1E-14 86.9 12.0 99 128-228 11-115 (119)
38 TIGR02917 PEP_TPR_lipo putativ 99.2 2.9E-10 6.2E-15 114.1 12.9 120 127-248 133-252 (899)
39 TIGR03302 OM_YfiO outer membra 99.2 3.5E-10 7.6E-15 99.2 11.5 117 128-245 79-225 (235)
40 PRK10049 pgaA outer membrane p 99.1 6.9E-10 1.5E-14 114.4 15.0 119 127-248 57-175 (765)
41 cd00189 TPR Tetratricopeptide 99.1 3.5E-10 7.5E-15 80.7 9.0 89 130-220 11-99 (100)
42 TIGR03302 OM_YfiO outer membra 99.1 7.5E-10 1.6E-14 97.1 12.7 120 128-248 42-191 (235)
43 PRK11788 tetratricopeptide rep 99.1 9.1E-10 2E-14 102.9 12.7 117 129-248 190-307 (389)
44 COG4235 Cytochrome c biogenesi 99.1 1.3E-09 2.9E-14 99.6 13.3 123 133-256 136-261 (287)
45 PRK11788 tetratricopeptide rep 99.1 6E-10 1.3E-14 104.1 11.2 117 128-246 116-237 (389)
46 PF13432 TPR_16: Tetratricopep 99.1 5.1E-10 1.1E-14 79.4 7.6 64 158-223 2-65 (65)
47 KOG1125 TPR repeat-containing 99.1 3.2E-10 7E-15 110.7 8.7 114 126-241 437-560 (579)
48 PLN02789 farnesyltranstransfer 99.1 3.2E-09 6.9E-14 99.2 14.1 111 132-244 50-163 (320)
49 KOG1155 Anaphase-promoting com 99.1 1.7E-09 3.6E-14 103.7 12.3 117 127-245 372-488 (559)
50 KOG0548 Molecular co-chaperone 99.0 1.4E-09 3E-14 105.6 11.0 107 128-236 367-473 (539)
51 PF12895 Apc3: Anaphase-promot 99.0 7.5E-10 1.6E-14 82.8 6.8 81 132-215 2-84 (84)
52 PF13429 TPR_15: Tetratricopep 99.0 1.1E-09 2.4E-14 99.1 9.1 120 127-248 118-239 (280)
53 COG4783 Putative Zn-dependent 99.0 4.8E-09 1E-13 101.0 13.5 114 130-245 317-430 (484)
54 CHL00033 ycf3 photosystem I as 99.0 6.4E-09 1.4E-13 87.4 12.7 68 131-199 47-117 (168)
55 PRK02603 photosystem I assembl 99.0 6E-09 1.3E-13 88.1 12.5 91 130-222 46-153 (172)
56 cd00189 TPR Tetratricopeptide 99.0 3E-09 6.5E-14 75.8 9.2 91 155-247 2-92 (100)
57 PRK10049 pgaA outer membrane p 99.0 5.3E-09 1.1E-13 107.9 14.3 114 132-248 28-141 (765)
58 PLN03088 SGT1, suppressor of 99.0 2.5E-09 5.5E-14 101.1 11.0 90 157-248 6-95 (356)
59 KOG0547 Translocase of outer m 99.0 1.2E-09 2.7E-14 105.2 8.4 113 131-245 372-484 (606)
60 KOG0547 Translocase of outer m 99.0 2.4E-09 5.3E-14 103.2 10.4 117 127-245 334-450 (606)
61 COG5010 TadD Flp pilus assembl 99.0 3.6E-09 7.7E-14 95.0 10.7 114 132-247 79-192 (257)
62 PRK15179 Vi polysaccharide bio 99.0 4.5E-09 9.7E-14 107.2 12.5 122 135-258 68-189 (694)
63 KOG2076 RNA polymerase III tra 99.0 7E-09 1.5E-13 105.5 13.4 120 133-254 153-273 (895)
64 PRK11906 transcriptional regul 99.0 6.7E-09 1.5E-13 100.2 12.3 120 134-254 273-403 (458)
65 KOG0543 FKBP-type peptidyl-pro 98.9 6.8E-09 1.5E-13 98.2 11.6 116 126-243 215-345 (397)
66 PLN02789 farnesyltranstransfer 98.9 1.6E-08 3.5E-13 94.5 13.7 101 134-236 87-189 (320)
67 KOG1125 TPR repeat-containing 98.9 3.6E-09 7.7E-14 103.5 9.0 110 134-245 409-520 (579)
68 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.6E-08 3.5E-13 78.2 11.0 94 153-248 2-101 (119)
69 PRK14574 hmsH outer membrane p 98.9 1.6E-08 3.5E-13 104.9 13.9 124 130-255 45-168 (822)
70 PF14559 TPR_19: Tetratricopep 98.9 6E-09 1.3E-13 74.2 6.9 64 167-231 4-67 (68)
71 CHL00033 ycf3 photosystem I as 98.9 4.1E-08 9E-13 82.4 12.4 109 133-243 13-133 (168)
72 PF13432 TPR_16: Tetratricopep 98.9 3.1E-09 6.7E-14 75.3 4.7 60 128-188 6-65 (65)
73 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 7.2E-08 1.6E-12 92.5 14.5 110 132-246 182-291 (395)
74 COG4235 Cytochrome c biogenesi 98.8 3.9E-08 8.5E-13 90.0 12.1 97 127-224 164-262 (287)
75 PRK10803 tol-pal system protei 98.8 9.6E-08 2.1E-12 87.0 14.6 95 131-227 155-255 (263)
76 PF12895 Apc3: Anaphase-promot 98.8 4.1E-09 8.9E-14 78.7 4.6 78 167-246 2-81 (84)
77 TIGR00540 hemY_coli hemY prote 98.8 4.3E-08 9.3E-13 93.9 12.6 116 128-245 272-392 (409)
78 KOG3060 Uncharacterized conser 98.8 4.1E-08 9E-13 88.2 11.3 112 127-240 94-205 (289)
79 PF13414 TPR_11: TPR repeat; P 98.8 5.8E-09 1.2E-13 74.6 4.8 58 127-185 11-69 (69)
80 PF14559 TPR_19: Tetratricopep 98.8 1.3E-08 2.9E-13 72.3 6.2 65 131-196 3-67 (68)
81 PRK10153 DNA-binding transcrip 98.8 5.9E-08 1.3E-12 96.2 12.7 114 133-248 356-478 (517)
82 cd05804 StaR_like StaR_like; a 98.8 5E-08 1.1E-12 90.2 11.4 112 135-248 96-211 (355)
83 PF13371 TPR_9: Tetratricopept 98.8 5.7E-08 1.2E-12 70.0 9.2 64 166-230 7-70 (73)
84 PRK02603 photosystem I assembl 98.8 4.2E-08 9.2E-13 82.9 9.6 88 150-239 32-122 (172)
85 KOG0553 TPR repeat-containing 98.8 5.1E-08 1.1E-12 89.3 10.1 86 158-245 86-171 (304)
86 PF09976 TPR_21: Tetratricopep 98.7 3.4E-07 7.4E-12 75.3 13.9 111 132-245 24-140 (145)
87 cd05804 StaR_like StaR_like; a 98.7 1.1E-07 2.4E-12 87.9 12.1 116 131-248 55-173 (355)
88 KOG2003 TPR repeat-containing 98.7 7.9E-08 1.7E-12 92.4 10.8 114 130-245 501-614 (840)
89 PRK15331 chaperone protein Sic 98.7 1.3E-07 2.8E-12 80.2 10.9 100 132-234 50-149 (165)
90 PF13371 TPR_9: Tetratricopept 98.7 7.3E-08 1.6E-12 69.4 7.8 67 128-195 4-70 (73)
91 KOG4162 Predicted calmodulin-b 98.7 1.6E-07 3.4E-12 94.6 11.9 113 131-245 662-776 (799)
92 PRK14574 hmsH outer membrane p 98.7 2E-07 4.3E-12 96.9 13.0 118 127-247 110-227 (822)
93 PF06552 TOM20_plant: Plant sp 98.7 2.7E-07 5.9E-12 79.2 11.5 98 135-232 7-123 (186)
94 TIGR00540 hemY_coli hemY prote 98.7 5.9E-07 1.3E-11 86.1 15.0 115 132-248 97-212 (409)
95 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.4E-07 3E-12 91.1 10.0 70 148-219 70-142 (453)
96 KOG3060 Uncharacterized conser 98.6 3.3E-07 7.1E-12 82.5 11.4 114 133-248 66-179 (289)
97 KOG1173 Anaphase-promoting com 98.6 1E-07 2.2E-12 93.3 8.5 115 132-248 393-514 (611)
98 PRK11906 transcriptional regul 98.6 5.8E-07 1.3E-11 86.9 13.1 109 133-243 318-427 (458)
99 KOG4234 TPR repeat-containing 98.6 4.8E-07 1E-11 79.3 11.0 111 130-242 106-221 (271)
100 KOG2002 TPR-containing nuclear 98.6 7.3E-08 1.6E-12 98.9 6.8 115 132-248 625-741 (1018)
101 PRK10803 tol-pal system protei 98.6 5.3E-07 1.1E-11 82.1 11.8 96 152-248 141-242 (263)
102 PRK10747 putative protoheme IX 98.6 7.7E-07 1.7E-11 85.1 13.4 113 127-245 271-383 (398)
103 PF12688 TPR_5: Tetratrico pep 98.6 1E-06 2.2E-11 71.2 12.0 87 155-243 3-95 (120)
104 KOG1128 Uncharacterized conser 98.6 2.1E-07 4.5E-12 93.4 9.2 112 131-244 497-608 (777)
105 PRK10747 putative protoheme IX 98.6 1.1E-06 2.4E-11 84.0 13.3 117 130-248 129-288 (398)
106 KOG1840 Kinesin light chain [C 98.5 3.5E-07 7.6E-12 90.2 9.7 119 125-245 247-389 (508)
107 KOG0548 Molecular co-chaperone 98.5 4.9E-07 1.1E-11 88.1 10.5 102 130-233 13-114 (539)
108 KOG4648 Uncharacterized conser 98.5 2.7E-07 5.8E-12 86.3 8.1 106 126-233 104-209 (536)
109 PRK15331 chaperone protein Sic 98.5 4.7E-07 1E-11 76.8 8.9 96 148-245 32-127 (165)
110 COG2956 Predicted N-acetylgluc 98.5 1.1E-06 2.3E-11 81.6 11.3 118 127-246 149-272 (389)
111 KOG1129 TPR repeat-containing 98.5 2.1E-07 4.7E-12 86.5 6.5 122 126-248 297-454 (478)
112 KOG2003 TPR repeat-containing 98.4 3.8E-07 8.2E-12 87.8 7.0 111 133-245 470-580 (840)
113 KOG0550 Molecular chaperone (D 98.4 6.8E-07 1.5E-11 85.1 8.2 112 131-244 215-342 (486)
114 KOG2002 TPR-containing nuclear 98.4 1.2E-06 2.5E-11 90.3 10.3 109 127-237 315-428 (1018)
115 PRK14720 transcript cleavage f 98.4 2.1E-06 4.6E-11 89.4 11.7 110 130-244 42-170 (906)
116 KOG2076 RNA polymerase III tra 98.4 2.3E-06 5E-11 87.5 11.6 121 126-248 180-305 (895)
117 KOG4162 Predicted calmodulin-b 98.4 1.1E-06 2.5E-11 88.6 9.3 95 127-223 692-788 (799)
118 KOG1173 Anaphase-promoting com 98.4 1.1E-06 2.5E-11 86.1 9.0 116 128-245 321-436 (611)
119 PRK10153 DNA-binding transcrip 98.4 3.5E-06 7.5E-11 83.6 11.9 88 134-224 399-488 (517)
120 PF13424 TPR_12: Tetratricopep 98.3 7.3E-07 1.6E-11 65.2 4.9 68 150-219 2-76 (78)
121 COG4783 Putative Zn-dependent 98.3 5.3E-06 1.1E-10 80.3 11.9 107 149-257 302-408 (484)
122 KOG1129 TPR repeat-containing 98.3 1.2E-06 2.5E-11 81.7 6.8 114 128-243 265-378 (478)
123 PF09976 TPR_21: Tetratricopep 98.3 3.2E-06 7E-11 69.5 8.7 83 131-216 60-145 (145)
124 KOG1840 Kinesin light chain [C 98.3 2.8E-06 6.1E-11 83.9 9.5 117 127-245 207-347 (508)
125 KOG0550 Molecular chaperone (D 98.3 2.6E-06 5.6E-11 81.2 8.4 99 131-232 261-363 (486)
126 KOG1128 Uncharacterized conser 98.3 1.4E-06 3.1E-11 87.5 7.0 115 128-245 433-575 (777)
127 KOG1174 Anaphase-promoting com 98.3 6.3E-06 1.4E-10 78.8 10.8 100 134-236 419-518 (564)
128 PF12688 TPR_5: Tetratrico pep 98.3 2.9E-05 6.2E-10 62.8 12.9 88 129-218 11-104 (120)
129 KOG1156 N-terminal acetyltrans 98.3 5.1E-06 1.1E-10 82.7 9.9 113 133-247 55-167 (700)
130 KOG0624 dsRNA-activated protei 98.2 2.2E-06 4.9E-11 80.2 6.7 94 149-244 34-127 (504)
131 KOG1156 N-terminal acetyltrans 98.2 4.8E-06 1E-10 82.9 9.3 110 133-244 21-130 (700)
132 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 2.1E-06 4.6E-11 83.0 6.4 73 183-256 70-146 (453)
133 PRK14720 transcript cleavage f 98.2 1.1E-05 2.3E-10 84.3 11.6 107 127-235 124-269 (906)
134 PF13512 TPR_18: Tetratricopep 98.2 2.8E-05 6.2E-10 64.5 11.7 93 132-226 23-136 (142)
135 KOG4642 Chaperone-dependent E3 98.2 6.5E-06 1.4E-10 73.7 8.4 90 127-218 18-107 (284)
136 KOG0543 FKBP-type peptidyl-pro 98.2 9.8E-06 2.1E-10 77.0 9.6 89 131-220 269-357 (397)
137 KOG0624 dsRNA-activated protei 98.2 7.2E-06 1.6E-10 76.9 8.6 91 132-224 51-141 (504)
138 PF04733 Coatomer_E: Coatomer 98.2 4E-06 8.6E-11 77.4 6.6 125 128-254 140-267 (290)
139 KOG1174 Anaphase-promoting com 98.1 1.4E-05 3.1E-10 76.4 9.9 115 127-243 240-388 (564)
140 PRK10866 outer membrane biogen 98.1 5.4E-05 1.2E-09 68.1 13.1 113 131-245 44-197 (243)
141 PF13428 TPR_14: Tetratricopep 98.1 7.4E-06 1.6E-10 54.1 5.4 41 154-195 2-42 (44)
142 KOG0376 Serine-threonine phosp 98.1 3.8E-06 8.2E-11 81.3 5.5 105 132-238 17-121 (476)
143 COG4785 NlpI Lipoprotein NlpI, 98.1 1.3E-05 2.9E-10 71.1 8.4 101 127-229 73-173 (297)
144 PF13525 YfiO: Outer membrane 98.1 4.1E-05 8.9E-10 66.7 11.4 112 131-243 17-161 (203)
145 KOG0495 HAT repeat protein [RN 98.1 3.2E-05 7E-10 77.5 11.8 111 132-244 664-774 (913)
146 PF13431 TPR_17: Tetratricopep 98.1 3.6E-06 7.7E-11 52.9 3.3 31 177-208 2-32 (34)
147 COG1729 Uncharacterized protei 98.1 8.7E-05 1.9E-09 67.5 13.3 94 132-227 154-253 (262)
148 KOG1127 TPR repeat-containing 98.1 6.8E-06 1.5E-10 85.0 6.8 118 127-245 500-652 (1238)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 2.9E-05 6.3E-10 74.6 10.1 83 132-216 213-295 (395)
150 PF04733 Coatomer_E: Coatomer 98.0 1.5E-05 3.2E-10 73.7 7.5 93 134-228 182-275 (290)
151 PF13428 TPR_14: Tetratricopep 98.0 1.7E-05 3.6E-10 52.3 5.4 43 188-231 1-43 (44)
152 KOG1127 TPR repeat-containing 98.0 2.9E-05 6.4E-10 80.5 9.5 93 131-223 14-108 (1238)
153 PF13431 TPR_17: Tetratricopep 98.0 8.4E-06 1.8E-10 51.2 3.3 34 141-175 1-34 (34)
154 PF12569 NARP1: NMDA receptor- 98.0 9.5E-05 2.1E-09 73.5 12.3 91 154-246 195-285 (517)
155 COG2956 Predicted N-acetylgluc 98.0 0.00012 2.6E-09 68.2 12.0 105 132-238 193-298 (389)
156 PRK10866 outer membrane biogen 97.9 0.00017 3.6E-09 65.0 12.2 84 152-237 31-120 (243)
157 KOG0495 HAT repeat protein [RN 97.9 0.00014 3.1E-09 72.9 12.4 42 202-243 664-705 (913)
158 COG4700 Uncharacterized protei 97.9 0.00029 6.4E-09 61.4 12.3 107 133-242 103-212 (251)
159 COG3071 HemY Uncharacterized e 97.9 0.00014 3E-09 69.1 11.1 113 130-248 274-386 (400)
160 PF05843 Suf: Suppressor of fo 97.9 5.9E-05 1.3E-09 69.1 8.4 111 132-243 14-127 (280)
161 PF12569 NARP1: NMDA receptor- 97.8 0.0002 4.4E-09 71.1 12.6 114 129-244 204-326 (517)
162 KOG4555 TPR repeat-containing 97.8 0.00023 4.9E-09 58.8 10.3 87 134-222 58-148 (175)
163 KOG4555 TPR repeat-containing 97.8 0.00038 8.2E-09 57.6 11.5 85 159-245 49-137 (175)
164 PF14938 SNAP: Soluble NSF att 97.8 3.9E-05 8.5E-10 70.1 6.5 130 127-259 83-232 (282)
165 COG1729 Uncharacterized protei 97.8 0.00016 3.5E-09 65.7 10.2 91 156-248 144-240 (262)
166 COG0457 NrfG FOG: TPR repeat [ 97.8 0.0011 2.3E-08 52.9 13.8 115 128-244 139-257 (291)
167 PF13525 YfiO: Outer membrane 97.8 0.00056 1.2E-08 59.5 12.7 114 129-243 52-198 (203)
168 PF07719 TPR_2: Tetratricopept 97.7 8.9E-05 1.9E-09 45.3 5.1 33 154-187 2-34 (34)
169 KOG0551 Hsp90 co-chaperone CNS 97.7 0.0001 2.2E-09 68.9 7.6 94 125-220 87-184 (390)
170 PF00515 TPR_1: Tetratricopept 97.7 6.9E-05 1.5E-09 46.1 4.5 32 154-186 2-33 (34)
171 PLN03077 Protein ECB2; Provisi 97.7 0.0004 8.7E-09 72.5 12.6 111 131-245 601-713 (857)
172 PF07719 TPR_2: Tetratricopept 97.7 0.00013 2.8E-09 44.6 5.3 34 188-222 1-34 (34)
173 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0012 2.5E-08 52.7 12.0 114 130-245 106-224 (291)
174 PF05843 Suf: Suppressor of fo 97.6 0.00038 8.3E-09 63.7 10.2 94 154-248 2-95 (280)
175 KOG0545 Aryl-hydrocarbon recep 97.6 0.00047 1E-08 62.3 10.3 99 124-225 184-300 (329)
176 PF13424 TPR_12: Tetratricopep 97.6 4.2E-05 9.2E-10 55.7 3.1 57 127-184 13-76 (78)
177 COG4700 Uncharacterized protei 97.6 0.00043 9.4E-09 60.4 9.7 113 133-248 70-185 (251)
178 PF13512 TPR_18: Tetratricopep 97.6 0.001 2.2E-08 55.3 11.4 84 153-238 10-99 (142)
179 PF00515 TPR_1: Tetratricopept 97.6 0.00015 3.3E-09 44.6 4.6 34 188-222 1-34 (34)
180 PF14938 SNAP: Soluble NSF att 97.6 0.00015 3.3E-09 66.2 6.3 120 124-246 40-178 (282)
181 PLN03081 pentatricopeptide (PP 97.5 0.00059 1.3E-08 69.7 10.8 76 167-245 475-550 (697)
182 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00019 4.1E-09 63.9 6.1 93 152-246 64-156 (297)
183 KOG2396 HAT (Half-A-TPR) repea 97.5 0.0015 3.2E-08 64.0 12.6 95 136-231 88-182 (568)
184 KOG4648 Uncharacterized conser 97.5 0.00024 5.3E-09 66.9 6.6 90 156-247 100-189 (536)
185 PLN03218 maturation of RBCL 1; 97.5 0.0027 5.9E-08 68.2 15.1 108 133-243 593-704 (1060)
186 KOG1070 rRNA processing protei 97.4 0.0011 2.4E-08 71.2 11.5 116 128-245 1539-1656(1710)
187 PF03704 BTAD: Bacterial trans 97.4 0.0026 5.7E-08 51.7 11.5 84 133-218 20-125 (146)
188 PF04184 ST7: ST7 protein; In 97.4 0.0015 3.2E-08 64.1 11.4 111 133-247 182-319 (539)
189 KOG4234 TPR repeat-containing 97.4 0.00032 7E-09 61.8 6.1 107 158-266 100-215 (271)
190 PF06552 TOM20_plant: Plant sp 97.4 0.00062 1.3E-08 58.7 7.4 68 170-238 7-84 (186)
191 PF10300 DUF3808: Protein of u 97.4 0.0023 5E-08 62.9 12.4 105 133-239 247-356 (468)
192 PLN03077 Protein ECB2; Provisi 97.3 0.0022 4.9E-08 67.0 12.1 115 128-249 533-651 (857)
193 KOG3824 Huntingtin interacting 97.3 0.00074 1.6E-08 62.9 7.4 67 166-233 128-194 (472)
194 PLN03218 maturation of RBCL 1; 97.3 0.0058 1.2E-07 65.7 15.2 82 132-216 485-569 (1060)
195 KOG2376 Signal recognition par 97.2 0.0026 5.6E-08 63.3 10.3 108 131-244 24-131 (652)
196 PLN03081 pentatricopeptide (PP 97.2 0.0047 1E-07 63.2 12.5 113 129-247 269-384 (697)
197 COG4105 ComL DNA uptake lipopr 97.2 0.0094 2E-07 54.0 12.9 97 125-222 34-149 (254)
198 KOG4642 Chaperone-dependent E3 97.1 0.0012 2.7E-08 59.4 6.8 79 167-246 23-101 (284)
199 COG3071 HemY Uncharacterized e 97.1 0.01 2.2E-07 56.6 13.3 111 132-244 97-208 (400)
200 KOG0376 Serine-threonine phosp 97.1 0.0002 4.2E-09 69.6 1.7 81 167-248 17-97 (476)
201 KOG2053 Mitochondrial inherita 97.1 0.005 1.1E-07 63.7 11.8 109 133-244 23-131 (932)
202 KOG2796 Uncharacterized conser 97.1 0.0025 5.5E-08 58.3 8.6 119 133-253 191-317 (366)
203 KOG1308 Hsp70-interacting prot 97.1 0.00015 3.3E-09 67.9 0.8 88 132-221 127-214 (377)
204 KOG3081 Vesicle coat complex C 97.1 0.0057 1.2E-07 55.9 10.9 109 132-243 150-261 (299)
205 PRK04841 transcriptional regul 97.1 0.0055 1.2E-07 63.9 11.8 118 129-248 462-598 (903)
206 KOG4340 Uncharacterized conser 97.0 0.0063 1.4E-07 56.7 10.7 68 132-200 23-90 (459)
207 KOG1130 Predicted G-alpha GTPa 97.0 0.0018 3.8E-08 62.5 6.9 117 126-244 202-336 (639)
208 KOG3785 Uncharacterized conser 97.0 0.0043 9.3E-08 58.9 9.3 109 128-238 66-234 (557)
209 PF13181 TPR_8: Tetratricopept 97.0 0.0016 3.6E-08 39.7 4.4 30 155-185 3-32 (34)
210 KOG2610 Uncharacterized conser 97.0 0.0068 1.5E-07 57.2 10.2 112 133-246 117-232 (491)
211 KOG1915 Cell cycle control pro 97.0 0.01 2.2E-07 58.2 11.7 109 133-244 380-492 (677)
212 PF13181 TPR_8: Tetratricopept 97.0 0.0017 3.6E-08 39.7 4.3 33 189-222 2-34 (34)
213 KOG2376 Signal recognition par 96.9 0.011 2.3E-07 59.1 11.8 108 132-244 92-245 (652)
214 KOG3824 Huntingtin interacting 96.9 0.0014 3.1E-08 61.0 5.5 65 132-197 129-193 (472)
215 PRK04841 transcriptional regul 96.9 0.011 2.4E-07 61.7 12.1 115 129-245 501-634 (903)
216 KOG4507 Uncharacterized conser 96.9 0.0063 1.4E-07 60.8 9.6 104 129-234 617-721 (886)
217 KOG3081 Vesicle coat complex C 96.9 0.013 2.7E-07 53.7 10.8 91 133-225 187-278 (299)
218 KOG1915 Cell cycle control pro 96.8 0.0096 2.1E-07 58.3 10.5 117 125-244 79-195 (677)
219 COG5191 Uncharacterized conser 96.8 0.0019 4.1E-08 60.2 5.5 92 139-231 93-184 (435)
220 KOG1586 Protein required for f 96.7 0.012 2.6E-07 53.0 9.5 133 125-259 80-231 (288)
221 COG3118 Thioredoxin domain-con 96.7 0.014 3.1E-07 53.9 10.1 110 132-245 147-258 (304)
222 KOG0545 Aryl-hydrocarbon recep 96.7 0.0061 1.3E-07 55.3 7.3 101 153-255 178-296 (329)
223 KOG2796 Uncharacterized conser 96.7 0.0089 1.9E-07 54.8 8.4 101 131-233 224-333 (366)
224 KOG2610 Uncharacterized conser 96.6 0.015 3.2E-07 55.0 9.3 113 130-244 148-268 (491)
225 PF08424 NRDE-2: NRDE-2, neces 96.6 0.066 1.4E-06 50.0 13.8 96 139-235 5-111 (321)
226 KOG0530 Protein farnesyltransf 96.5 0.039 8.5E-07 50.5 11.5 110 133-243 57-167 (318)
227 PF13174 TPR_6: Tetratricopept 96.5 0.0062 1.4E-07 36.5 4.2 31 190-221 2-32 (33)
228 KOG1070 rRNA processing protei 96.4 0.029 6.4E-07 60.7 11.6 82 166-248 1542-1625(1710)
229 KOG3785 Uncharacterized conser 96.4 0.025 5.3E-07 53.9 9.8 102 132-239 35-137 (557)
230 PRK10941 hypothetical protein; 96.4 0.047 1E-06 50.1 11.4 67 166-233 193-259 (269)
231 KOG1310 WD40 repeat protein [G 96.3 0.013 2.9E-07 58.0 7.8 88 134-222 389-478 (758)
232 KOG1585 Protein required for f 96.3 0.041 8.8E-07 50.0 10.1 121 122-244 34-171 (308)
233 PF14561 TPR_20: Tetratricopep 96.3 0.026 5.7E-07 43.1 7.6 50 137-187 6-55 (90)
234 PF13281 DUF4071: Domain of un 96.2 0.039 8.4E-07 52.9 10.3 114 129-243 151-279 (374)
235 KOG1308 Hsp70-interacting prot 96.2 0.0014 3.1E-08 61.5 0.5 78 166-244 126-203 (377)
236 COG4105 ComL DNA uptake lipopr 96.2 0.04 8.6E-07 50.0 9.6 82 153-236 34-121 (254)
237 PF14561 TPR_20: Tetratricopep 96.2 0.051 1.1E-06 41.6 8.9 67 173-240 7-75 (90)
238 PF09613 HrpB1_HrpK: Bacterial 96.1 0.098 2.1E-06 44.4 11.2 103 132-238 23-125 (160)
239 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.033 7.1E-07 38.6 6.6 40 155-195 3-42 (53)
240 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.035 7.5E-07 38.5 6.7 44 189-233 2-45 (53)
241 PF13176 TPR_7: Tetratricopept 96.1 0.012 2.6E-07 36.9 4.1 25 156-181 2-26 (36)
242 PF03704 BTAD: Bacterial trans 96.0 0.094 2E-06 42.5 10.4 77 167-244 19-117 (146)
243 PF13174 TPR_6: Tetratricopept 95.9 0.018 3.9E-07 34.4 4.4 33 154-187 1-33 (33)
244 smart00028 TPR Tetratricopepti 95.9 0.013 2.8E-07 33.0 3.6 31 155-186 3-33 (34)
245 smart00028 TPR Tetratricopepti 95.9 0.016 3.6E-07 32.6 4.0 33 189-222 2-34 (34)
246 PF09986 DUF2225: Uncharacteri 95.9 0.2 4.2E-06 44.4 12.5 102 132-235 90-212 (214)
247 COG3914 Spy Predicted O-linked 95.9 0.12 2.5E-06 51.9 12.0 107 131-238 79-191 (620)
248 KOG3364 Membrane protein invol 95.8 0.16 3.5E-06 42.2 10.6 82 153-235 32-117 (149)
249 PF13176 TPR_7: Tetratricopept 95.8 0.02 4.3E-07 35.9 4.2 28 190-218 1-28 (36)
250 COG4976 Predicted methyltransf 95.6 0.02 4.3E-07 51.5 5.2 63 132-195 8-71 (287)
251 COG3898 Uncharacterized membra 95.6 0.15 3.3E-06 49.2 11.0 116 131-247 166-287 (531)
252 PF13281 DUF4071: Domain of un 95.5 0.2 4.3E-06 48.1 11.7 123 132-256 195-339 (374)
253 COG4976 Predicted methyltransf 95.4 0.019 4.1E-07 51.7 4.3 56 167-223 8-63 (287)
254 KOG1941 Acetylcholine receptor 95.4 0.067 1.4E-06 51.1 8.0 109 132-242 135-265 (518)
255 KOG0551 Hsp90 co-chaperone CNS 95.4 0.05 1.1E-06 51.2 7.0 94 147-242 74-172 (390)
256 PF04184 ST7: ST7 protein; In 95.2 0.19 4.1E-06 49.7 10.8 98 131-229 271-386 (539)
257 KOG2047 mRNA splicing factor [ 95.2 0.18 3.8E-06 51.3 10.6 121 125-248 393-536 (835)
258 PF08424 NRDE-2: NRDE-2, neces 95.2 0.51 1.1E-05 44.1 13.3 110 134-244 46-175 (321)
259 COG0790 FOG: TPR repeat, SEL1 95.2 0.49 1.1E-05 42.7 12.8 97 134-237 128-236 (292)
260 KOG2053 Mitochondrial inherita 95.1 0.2 4.3E-06 52.4 11.0 102 131-235 55-156 (932)
261 KOG2471 TPR repeat-containing 95.1 0.027 5.8E-07 55.5 4.6 106 131-238 252-384 (696)
262 COG2976 Uncharacterized protei 95.1 0.26 5.7E-06 43.2 10.2 104 137-244 70-180 (207)
263 PF09613 HrpB1_HrpK: Bacterial 95.1 1.9 4.1E-05 36.6 15.1 73 166-239 22-94 (160)
264 PRK10941 hypothetical protein; 95.0 0.13 2.9E-06 47.1 8.7 66 131-197 193-258 (269)
265 KOG4507 Uncharacterized conser 95.0 0.059 1.3E-06 54.2 6.5 120 136-257 196-317 (886)
266 KOG4340 Uncharacterized conser 94.9 0.17 3.6E-06 47.5 8.8 76 167-243 23-98 (459)
267 KOG2396 HAT (Half-A-TPR) repea 94.8 0.49 1.1E-05 46.9 12.3 67 133-199 119-185 (568)
268 COG0790 FOG: TPR repeat, SEL1 94.8 0.53 1.2E-05 42.5 12.1 97 133-235 91-199 (292)
269 KOG0529 Protein geranylgeranyl 94.8 0.36 7.8E-06 46.6 11.2 103 132-235 88-195 (421)
270 KOG2047 mRNA splicing factor [ 94.8 0.2 4.4E-06 50.9 9.8 90 130-220 488-581 (835)
271 PF10300 DUF3808: Protein of u 94.7 0.12 2.5E-06 51.0 7.9 93 125-218 273-376 (468)
272 PF02259 FAT: FAT domain; Int 94.6 0.67 1.5E-05 42.5 12.2 106 131-238 158-307 (352)
273 PF10373 EST1_DNA_bind: Est1 D 94.5 0.14 3E-06 45.7 7.3 62 173-235 1-62 (278)
274 KOG1130 Predicted G-alpha GTPa 94.4 0.37 7.9E-06 47.0 10.1 113 127-241 243-373 (639)
275 PF11207 DUF2989: Protein of u 94.1 1 2.3E-05 39.6 11.7 74 167-243 119-198 (203)
276 TIGR02561 HrpB1_HrpK type III 94.1 0.66 1.4E-05 39.0 10.0 70 168-238 24-93 (153)
277 KOG1550 Extracellular protein 94.1 0.46 1E-05 47.7 10.8 99 132-234 262-371 (552)
278 KOG1310 WD40 repeat protein [G 94.0 0.1 2.2E-06 52.0 5.6 88 167-254 387-476 (758)
279 COG3914 Spy Predicted O-linked 94.0 0.24 5.3E-06 49.7 8.3 114 134-248 46-167 (620)
280 PF13374 TPR_10: Tetratricopep 93.9 0.14 3.1E-06 31.8 4.6 28 155-183 4-31 (42)
281 PF13374 TPR_10: Tetratricopep 93.9 0.16 3.6E-06 31.6 4.8 31 188-219 2-32 (42)
282 KOG2471 TPR repeat-containing 93.9 0.093 2E-06 51.8 5.1 117 127-245 214-357 (696)
283 COG2976 Uncharacterized protei 93.8 1.2 2.6E-05 39.2 11.4 86 132-221 102-191 (207)
284 PF04781 DUF627: Protein of un 93.8 0.35 7.6E-06 38.6 7.4 86 131-217 8-106 (111)
285 COG2912 Uncharacterized conser 93.7 0.38 8.3E-06 44.1 8.5 68 165-233 192-259 (269)
286 KOG1941 Acetylcholine receptor 93.2 0.2 4.3E-06 48.0 5.8 90 127-218 170-275 (518)
287 KOG1258 mRNA processing protei 93.1 1.6 3.5E-05 43.9 12.4 112 130-243 308-420 (577)
288 PF08631 SPO22: Meiosis protei 93.0 2.4 5.1E-05 38.6 12.8 114 131-246 5-144 (278)
289 KOG1550 Extracellular protein 92.9 1.5 3.2E-05 44.1 12.2 103 134-242 308-416 (552)
290 KOG1258 mRNA processing protei 92.9 1.7 3.7E-05 43.8 12.2 114 127-241 374-493 (577)
291 PF10373 EST1_DNA_bind: Est1 D 92.8 0.45 9.7E-06 42.4 7.6 62 138-200 1-62 (278)
292 PF04781 DUF627: Protein of un 92.8 0.55 1.2E-05 37.5 7.1 83 160-243 3-98 (111)
293 smart00386 HAT HAT (Half-A-TPR 92.8 0.3 6.5E-06 28.5 4.5 27 169-195 2-28 (33)
294 KOG0530 Protein farnesyltransf 92.8 0.8 1.7E-05 42.1 9.0 82 133-216 92-174 (318)
295 PF07079 DUF1347: Protein of u 92.8 2 4.3E-05 42.3 12.2 113 134-254 395-523 (549)
296 KOG1586 Protein required for f 92.3 0.59 1.3E-05 42.4 7.4 118 125-244 40-175 (288)
297 COG3898 Uncharacterized membra 92.2 2.1 4.6E-05 41.5 11.4 107 133-244 243-350 (531)
298 KOG2300 Uncharacterized conser 92.0 2.5 5.4E-05 42.0 11.8 114 134-247 24-151 (629)
299 KOG3364 Membrane protein invol 91.9 0.77 1.7E-05 38.2 7.1 63 132-195 48-112 (149)
300 KOG1914 mRNA cleavage and poly 91.9 0.83 1.8E-05 45.8 8.6 73 143-218 10-82 (656)
301 KOG3617 WD40 and TPR repeat-co 91.4 1.1 2.3E-05 47.2 9.0 89 153-243 858-987 (1416)
302 TIGR02561 HrpB1_HrpK type III 91.3 1.6 3.4E-05 36.8 8.4 86 132-220 23-108 (153)
303 PF04910 Tcf25: Transcriptiona 91.2 3 6.4E-05 39.8 11.4 109 130-239 51-194 (360)
304 PF11207 DUF2989: Protein of u 91.1 1.5 3.3E-05 38.6 8.6 57 151-210 139-199 (203)
305 PF12862 Apc5: Anaphase-promot 91.0 2.3 4.9E-05 32.3 8.6 53 167-220 11-72 (94)
306 PF07720 TPR_3: Tetratricopept 90.8 0.88 1.9E-05 28.8 5.1 32 155-187 3-36 (36)
307 KOG0529 Protein geranylgeranyl 90.6 3.5 7.6E-05 40.0 11.2 103 136-238 46-160 (421)
308 COG5191 Uncharacterized conser 90.5 0.23 5.1E-06 46.7 3.1 66 132-197 120-185 (435)
309 smart00386 HAT HAT (Half-A-TPR 90.5 0.87 1.9E-05 26.4 4.7 31 203-233 1-31 (33)
310 KOG3617 WD40 and TPR repeat-co 90.3 2.5 5.5E-05 44.5 10.5 118 125-243 918-1100(1416)
311 PF10602 RPN7: 26S proteasome 89.5 5.7 0.00012 33.9 10.8 91 153-245 36-135 (177)
312 PF02259 FAT: FAT domain; Int 89.3 4.7 0.0001 36.8 10.9 67 154-221 253-341 (352)
313 KOG1914 mRNA cleavage and poly 88.6 8.1 0.00018 39.0 12.2 110 134-244 346-456 (656)
314 PF12862 Apc5: Anaphase-promot 88.5 1.8 3.8E-05 32.9 6.2 53 132-185 11-72 (94)
315 PF07720 TPR_3: Tetratricopept 88.3 1.9 4.1E-05 27.3 5.2 33 189-222 2-36 (36)
316 KOG1585 Protein required for f 88.2 9.7 0.00021 35.0 11.5 111 133-245 85-212 (308)
317 COG3629 DnrI DNA-binding trans 88.2 2.8 6E-05 38.8 8.3 79 135-217 137-215 (280)
318 PF10602 RPN7: 26S proteasome 87.9 2.7 5.9E-05 35.9 7.6 93 127-220 44-144 (177)
319 PLN03138 Protein TOC75; Provis 87.5 1.2 2.5E-05 46.8 5.9 16 172-187 165-180 (796)
320 PF10516 SHNi-TPR: SHNi-TPR; 87.3 1.1 2.4E-05 28.8 3.7 29 189-218 2-30 (38)
321 PF04910 Tcf25: Transcriptiona 86.5 4.8 0.0001 38.4 9.2 89 132-221 116-225 (360)
322 PF07079 DUF1347: Protein of u 86.5 2.9 6.3E-05 41.2 7.7 78 153-234 460-539 (549)
323 PF09986 DUF2225: Uncharacteri 86.4 3.6 7.8E-05 36.3 7.8 66 134-200 140-212 (214)
324 COG4649 Uncharacterized protei 85.9 9.7 0.00021 33.3 9.8 109 133-244 72-188 (221)
325 KOG4814 Uncharacterized conser 85.7 5.8 0.00012 40.8 9.5 90 153-245 355-450 (872)
326 PRK13184 pknD serine/threonine 85.5 7.4 0.00016 41.8 10.8 96 132-229 488-592 (932)
327 PF12968 DUF3856: Domain of Un 85.5 19 0.00041 29.6 10.9 84 133-218 23-129 (144)
328 COG3118 Thioredoxin domain-con 85.4 4.8 0.0001 37.5 8.3 78 136-218 120-197 (304)
329 KOG4814 Uncharacterized conser 84.8 7.4 0.00016 40.0 9.8 84 133-218 368-457 (872)
330 PF07721 TPR_4: Tetratricopept 84.4 1.4 2.9E-05 25.5 2.8 21 156-177 4-24 (26)
331 COG3947 Response regulator con 84.4 4.7 0.0001 37.8 7.7 47 167-214 292-338 (361)
332 PF07721 TPR_4: Tetratricopept 83.9 1.5 3.3E-05 25.2 2.9 25 189-214 2-26 (26)
333 KOG2422 Uncharacterized conser 83.4 12 0.00026 38.0 10.5 87 133-220 356-450 (665)
334 KOG0546 HSP90 co-chaperone CPR 83.3 1.3 2.9E-05 42.1 3.7 111 131-243 234-363 (372)
335 KOG0276 Vesicle coat complex C 82.9 5.7 0.00012 40.6 8.1 114 141-265 629-764 (794)
336 PF11846 DUF3366: Domain of un 82.3 7.8 0.00017 33.0 8.0 51 170-222 127-177 (193)
337 COG2912 Uncharacterized conser 81.8 4.2 9.1E-05 37.4 6.3 63 133-196 195-257 (269)
338 COG4455 ImpE Protein of avirul 81.0 30 0.00065 31.4 11.1 62 133-195 15-76 (273)
339 PF10579 Rapsyn_N: Rapsyn N-te 80.8 11 0.00023 28.4 7.1 56 162-218 15-72 (80)
340 COG4907 Predicted membrane pro 80.6 0.94 2E-05 44.4 1.7 10 19-28 502-511 (595)
341 PF10345 Cohesin_load: Cohesin 79.8 25 0.00055 35.7 11.9 85 135-221 37-131 (608)
342 KOG3807 Predicted membrane pro 79.3 27 0.00058 33.6 10.8 100 134-237 199-325 (556)
343 PF10579 Rapsyn_N: Rapsyn N-te 79.1 6.1 0.00013 29.7 5.3 56 125-182 13-71 (80)
344 PF13226 DUF4034: Domain of un 78.3 29 0.00063 32.1 10.6 108 132-239 13-149 (277)
345 PF08631 SPO22: Meiosis protei 78.1 16 0.00034 33.2 8.9 78 166-244 5-105 (278)
346 PF02184 HAT: HAT (Half-A-TPR) 77.4 5.1 0.00011 24.9 3.7 27 204-231 2-28 (32)
347 PF10516 SHNi-TPR: SHNi-TPR; 76.9 5.2 0.00011 25.7 3.9 30 154-184 2-31 (38)
348 COG2909 MalT ATP-dependent tra 76.6 47 0.001 35.4 12.7 108 132-241 428-555 (894)
349 PRK15180 Vi polysaccharide bio 76.2 12 0.00026 37.5 7.9 47 133-180 303-349 (831)
350 PF08311 Mad3_BUB1_I: Mad3/BUB 75.4 27 0.00059 28.1 8.7 44 172-216 81-126 (126)
351 COG3629 DnrI DNA-binding trans 74.3 8.4 0.00018 35.6 6.0 51 132-183 166-216 (280)
352 COG3947 Response regulator con 74.2 4.7 0.0001 37.8 4.3 55 125-180 285-339 (361)
353 PF10345 Cohesin_load: Cohesin 73.5 40 0.00086 34.2 11.3 116 127-244 68-200 (608)
354 KOG1839 Uncharacterized protei 72.9 7.3 0.00016 42.7 5.9 112 135-248 954-1082(1236)
355 KOG2300 Uncharacterized conser 72.4 47 0.001 33.4 10.8 109 133-246 337-468 (629)
356 cd02682 MIT_AAA_Arch MIT: doma 72.2 19 0.00042 26.7 6.4 13 211-223 35-47 (75)
357 smart00101 14_3_3 14-3-3 homol 72.0 41 0.00088 30.5 9.8 49 170-218 144-200 (244)
358 KOG3973 Uncharacterized conser 72.0 3.6 7.9E-05 39.1 3.1 37 92-129 349-385 (465)
359 PF00244 14-3-3: 14-3-3 protei 71.6 7.9 0.00017 34.7 5.1 46 136-181 143-196 (236)
360 PF14863 Alkyl_sulf_dimr: Alky 70.2 18 0.00039 30.0 6.5 59 140-200 58-116 (141)
361 COG5107 RNA14 Pre-mRNA 3'-end 70.0 17 0.00038 36.1 7.3 80 139-220 28-107 (660)
362 cd02680 MIT_calpain7_2 MIT: do 69.8 8.9 0.00019 28.4 4.2 17 167-183 19-35 (75)
363 KOG4279 Serine/threonine prote 69.4 15 0.00032 38.7 6.9 104 130-235 298-412 (1226)
364 PF14863 Alkyl_sulf_dimr: Alky 69.4 19 0.00041 29.9 6.5 52 186-238 68-119 (141)
365 PF11846 DUF3366: Domain of un 68.6 23 0.00049 30.1 7.2 52 134-187 126-177 (193)
366 PF04053 Coatomer_WDAD: Coatom 68.5 29 0.00064 34.1 8.7 31 185-216 344-374 (443)
367 smart00101 14_3_3 14-3-3 homol 68.2 21 0.00045 32.3 7.1 48 135-182 144-199 (244)
368 PLN03138 Protein TOC75; Provis 68.0 11 0.00025 39.6 6.0 15 138-152 166-180 (796)
369 KOG4014 Uncharacterized conser 68.0 21 0.00045 31.5 6.7 97 133-234 49-155 (248)
370 PF09205 DUF1955: Domain of un 67.9 53 0.0012 27.5 8.7 52 167-219 99-150 (161)
371 PF02184 HAT: HAT (Half-A-TPR) 67.2 12 0.00026 23.2 3.7 26 134-160 2-27 (32)
372 COG4649 Uncharacterized protei 67.1 88 0.0019 27.5 10.2 103 131-236 106-213 (221)
373 KOG3783 Uncharacterized conser 66.6 26 0.00056 35.3 7.8 100 134-235 248-350 (546)
374 cd02680 MIT_calpain7_2 MIT: do 66.4 14 0.00029 27.4 4.5 14 171-184 4-17 (75)
375 COG5107 RNA14 Pre-mRNA 3'-end 66.4 90 0.002 31.3 11.3 91 130-222 443-535 (660)
376 PRK15490 Vi polysaccharide bio 65.9 41 0.00088 34.3 9.2 77 133-213 22-98 (578)
377 PF12968 DUF3856: Domain of Un 65.5 76 0.0016 26.1 10.9 77 167-244 22-121 (144)
378 cd02681 MIT_calpain7_1 MIT: do 65.3 16 0.00034 27.1 4.8 17 166-182 18-34 (76)
379 smart00671 SEL1 Sel1-like repe 64.7 11 0.00025 22.3 3.4 14 204-217 20-33 (36)
380 KOG4014 Uncharacterized conser 63.5 28 0.0006 30.8 6.6 89 150-241 31-123 (248)
381 COG4455 ImpE Protein of avirul 63.3 40 0.00086 30.6 7.7 57 167-224 14-70 (273)
382 PF15015 NYD-SP12_N: Spermatog 63.2 32 0.00069 34.0 7.6 42 167-209 241-282 (569)
383 cd02681 MIT_calpain7_1 MIT: do 62.2 15 0.00033 27.2 4.2 15 171-185 4-18 (76)
384 cd02679 MIT_spastin MIT: domai 60.8 18 0.00038 27.1 4.3 18 168-185 3-20 (79)
385 PF09670 Cas_Cas02710: CRISPR- 60.8 1.2E+02 0.0026 29.0 11.2 51 132-183 144-198 (379)
386 PF13226 DUF4034: Domain of un 59.4 60 0.0013 30.0 8.4 68 137-205 61-149 (277)
387 cd02682 MIT_AAA_Arch MIT: doma 59.4 21 0.00047 26.4 4.5 21 170-190 29-49 (75)
388 PF00244 14-3-3: 14-3-3 protei 59.2 38 0.00083 30.2 7.0 48 171-218 143-198 (236)
389 PF15015 NYD-SP12_N: Spermatog 59.0 90 0.0019 31.0 9.8 102 136-243 170-282 (569)
390 KOG0546 HSP90 co-chaperone CPR 58.8 13 0.00027 35.6 4.0 62 137-199 293-354 (372)
391 TIGR03504 FimV_Cterm FimV C-te 58.7 22 0.00047 23.5 4.0 25 192-217 3-27 (44)
392 PF11817 Foie-gras_1: Foie gra 58.7 76 0.0016 28.3 8.9 48 135-183 154-207 (247)
393 TIGR02996 rpt_mate_G_obs repea 58.3 27 0.00058 23.1 4.3 32 176-208 4-35 (42)
394 COG4941 Predicted RNA polymera 58.1 97 0.0021 29.8 9.6 95 133-231 310-407 (415)
395 cd02677 MIT_SNX15 MIT: domain 57.9 16 0.00035 26.8 3.7 17 166-182 18-34 (75)
396 PF04212 MIT: MIT (microtubule 57.2 27 0.00059 24.6 4.7 16 167-182 18-33 (69)
397 cd02678 MIT_VPS4 MIT: domain c 57.0 28 0.00061 25.2 4.9 13 136-148 4-16 (75)
398 PRK13184 pknD serine/threonine 56.6 59 0.0013 35.1 8.9 87 134-222 534-624 (932)
399 PF01239 PPTA: Protein prenylt 56.4 34 0.00073 20.2 4.3 25 173-197 2-26 (31)
400 KOG0890 Protein kinase of the 55.7 1.1E+02 0.0023 36.3 10.9 81 135-219 1645-1732(2382)
401 smart00745 MIT Microtubule Int 55.4 25 0.00053 25.3 4.3 16 167-182 21-36 (77)
402 KOG0128 RNA-binding protein SA 54.2 1.9E+02 0.0042 30.8 11.8 104 134-239 94-199 (881)
403 PF09205 DUF1955: Domain of un 54.2 56 0.0012 27.4 6.5 52 132-184 99-150 (161)
404 KOG2581 26S proteasome regulat 54.1 98 0.0021 30.5 9.1 58 166-224 221-282 (493)
405 PF09797 NatB_MDM20: N-acetylt 53.7 98 0.0021 29.1 9.2 46 168-214 197-242 (365)
406 PF04190 DUF410: Protein of un 53.6 1.5E+02 0.0032 26.8 10.0 67 151-218 88-170 (260)
407 PHA02537 M terminase endonucle 53.4 26 0.00055 31.5 4.9 93 127-221 91-210 (230)
408 cd02656 MIT MIT: domain contai 53.3 28 0.00061 25.0 4.3 16 167-182 19-34 (75)
409 smart00745 MIT Microtubule Int 52.6 37 0.00081 24.4 4.9 44 134-186 4-47 (77)
410 KOG0985 Vesicle coat protein c 52.4 82 0.0018 34.6 8.9 88 150-245 1101-1188(1666)
411 cd02683 MIT_1 MIT: domain cont 51.7 71 0.0015 23.5 6.3 11 137-147 5-15 (77)
412 COG3107 LppC Putative lipoprot 51.7 1.4E+02 0.003 30.4 10.0 98 134-232 43-143 (604)
413 COG2909 MalT ATP-dependent tra 51.4 2E+02 0.0044 30.8 11.6 110 132-243 471-597 (894)
414 PF09797 NatB_MDM20: N-acetylt 51.3 77 0.0017 29.8 8.1 47 133-180 197-243 (365)
415 KOG0890 Protein kinase of the 51.3 82 0.0018 37.1 9.3 103 130-236 1681-1802(2382)
416 KOG4279 Serine/threonine prote 51.0 6.3 0.00014 41.2 0.7 110 130-241 212-338 (1226)
417 PF11817 Foie-gras_1: Foie gra 49.9 79 0.0017 28.2 7.6 72 171-243 155-238 (247)
418 KOG2758 Translation initiation 49.8 63 0.0014 30.9 6.9 80 136-218 112-196 (432)
419 KOG3783 Uncharacterized conser 49.4 1.1E+02 0.0023 31.0 8.9 72 149-221 444-523 (546)
420 COG1747 Uncharacterized N-term 49.3 2E+02 0.0043 29.4 10.5 100 134-235 113-251 (711)
421 PF13041 PPR_2: PPR repeat fam 49.1 70 0.0015 20.6 6.2 18 167-184 16-33 (50)
422 KOG3616 Selective LIM binding 49.1 79 0.0017 33.6 8.0 110 125-244 667-786 (1636)
423 PRK15180 Vi polysaccharide bio 48.8 70 0.0015 32.3 7.4 77 167-244 302-378 (831)
424 cd02684 MIT_2 MIT: domain cont 48.7 46 0.00099 24.4 4.8 14 135-148 3-16 (75)
425 cd02679 MIT_spastin MIT: domai 48.7 40 0.00086 25.2 4.5 18 134-151 4-21 (79)
426 PF05053 Menin: Menin; InterP 48.5 70 0.0015 32.6 7.4 66 151-218 275-347 (618)
427 KOG0128 RNA-binding protein SA 48.3 1.4E+02 0.003 31.8 9.8 87 132-219 126-220 (881)
428 PF05918 API5: Apoptosis inhib 48.2 6 0.00013 40.0 0.0 12 8-19 455-466 (556)
429 PF12854 PPR_1: PPR repeat 48.0 46 0.001 20.2 4.1 12 202-213 20-31 (34)
430 COG1747 Uncharacterized N-term 47.9 1.5E+02 0.0033 30.2 9.5 83 132-219 79-161 (711)
431 cd02656 MIT MIT: domain contai 47.9 36 0.00079 24.4 4.2 43 135-186 3-45 (75)
432 PF04090 RNA_pol_I_TF: RNA pol 47.6 1.8E+02 0.0038 25.6 9.1 28 168-195 55-82 (199)
433 smart00299 CLH Clathrin heavy 47.5 1.4E+02 0.003 23.5 8.3 45 132-178 20-64 (140)
434 KOG2422 Uncharacterized conser 46.2 2.2E+02 0.0047 29.4 10.4 75 162-238 351-431 (665)
435 KOG0985 Vesicle coat protein c 45.1 2.1E+02 0.0046 31.7 10.5 93 133-244 1062-1154(1666)
436 PF13041 PPR_2: PPR repeat fam 44.1 86 0.0019 20.2 5.8 43 187-230 2-45 (50)
437 cd02683 MIT_1 MIT: domain cont 43.9 51 0.0011 24.3 4.5 13 208-220 32-44 (77)
438 PF07219 HemY_N: HemY protein 43.9 1.3E+02 0.0027 23.3 7.0 37 202-238 72-108 (108)
439 cd02678 MIT_VPS4 MIT: domain c 43.6 1.1E+02 0.0024 22.0 6.2 15 167-181 19-33 (75)
440 PF01239 PPTA: Protein prenylt 43.1 69 0.0015 18.8 4.6 29 208-236 2-30 (31)
441 PF08238 Sel1: Sel1 repeat; I 43.1 72 0.0016 19.0 5.0 13 170-182 24-36 (39)
442 cd02684 MIT_2 MIT: domain cont 42.2 71 0.0015 23.3 5.0 15 170-184 3-17 (75)
443 PF01535 PPR: PPR repeat; Int 42.1 43 0.00093 18.7 3.2 15 167-181 13-27 (31)
444 COG5536 BET4 Protein prenyltra 41.9 70 0.0015 29.9 5.9 104 134-239 89-203 (328)
445 TIGR02996 rpt_mate_G_obs repea 41.6 68 0.0015 21.2 4.2 34 140-174 3-36 (42)
446 PF04212 MIT: MIT (microtubule 40.3 78 0.0017 22.2 4.9 16 170-185 2-17 (69)
447 TIGR03504 FimV_Cterm FimV C-te 40.1 56 0.0012 21.5 3.7 25 157-182 3-27 (44)
448 PF09670 Cas_Cas02710: CRISPR- 39.5 1.7E+02 0.0036 28.1 8.4 59 158-218 136-198 (379)
449 cd02677 MIT_SNX15 MIT: domain 38.2 1.6E+02 0.0034 21.5 7.1 43 135-186 3-45 (75)
450 COG5536 BET4 Protein prenyltra 36.5 1.3E+02 0.0028 28.3 6.7 98 136-233 49-154 (328)
451 KOG3807 Predicted membrane pro 36.4 1.5E+02 0.0032 28.7 7.2 73 157-231 279-354 (556)
452 PF04053 Coatomer_WDAD: Coatom 36.3 1.9E+02 0.004 28.5 8.3 58 150-217 344-401 (443)
453 KOG0921 Dosage compensation co 36.2 36 0.00078 36.7 3.4 12 36-47 1127-1138(1282)
454 PF10255 Paf67: RNA polymerase 36.0 74 0.0016 31.0 5.4 90 131-221 134-231 (404)
455 KOG3074 Transcriptional regula 35.4 26 0.00056 31.7 2.0 17 225-241 157-173 (263)
456 TIGR00756 PPR pentatricopeptid 34.9 87 0.0019 17.6 4.0 15 202-216 13-27 (35)
457 PF08260 Kinin: Insect kinin p 34.1 18 0.0004 15.5 0.4 6 9-14 2-7 (8)
458 PF12753 Nro1: Nuclear pore co 34.1 54 0.0012 31.9 4.1 46 170-218 334-391 (404)
459 KOG4151 Myosin assembly protei 33.2 87 0.0019 32.9 5.6 99 132-231 66-169 (748)
460 cd00280 TRFH Telomeric Repeat 32.6 3.5E+02 0.0075 23.8 8.7 64 134-198 84-154 (200)
461 smart00299 CLH Clathrin heavy 32.5 2.4E+02 0.0053 22.0 7.8 75 167-244 20-103 (140)
462 KOG2997 F-box protein FBX9 [Ge 31.1 65 0.0014 30.6 3.9 42 129-186 10-51 (366)
463 KOG0739 AAA+-type ATPase [Post 31.0 2.9E+02 0.0063 26.4 8.2 60 141-218 6-71 (439)
464 COG4259 Uncharacterized protei 30.2 2.6E+02 0.0056 22.3 6.5 49 175-224 58-107 (121)
465 KOG2908 26S proteasome regulat 29.7 4.6E+02 0.01 25.3 9.3 91 152-243 73-177 (380)
466 PF12583 TPPII_N: Tripeptidyl 29.3 2E+02 0.0043 23.9 6.0 31 167-197 89-119 (139)
467 KOG2908 26S proteasome regulat 29.3 3.4E+02 0.0075 26.1 8.4 85 132-217 88-185 (380)
468 PF13812 PPR_3: Pentatricopept 29.2 1.2E+02 0.0025 17.3 4.4 16 202-217 14-29 (34)
469 PTZ00009 heat shock 70 kDa pro 29.1 44 0.00095 34.4 2.7 14 99-112 614-627 (653)
470 PF12583 TPPII_N: Tripeptidyl 29.0 1.3E+02 0.0029 24.9 4.9 36 198-233 85-120 (139)
471 KOG2581 26S proteasome regulat 28.7 52 0.0011 32.3 3.0 57 132-189 222-282 (493)
472 PF07219 HemY_N: HemY protein 28.6 2.7E+02 0.006 21.4 6.9 30 166-195 71-100 (108)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 28.6 3E+02 0.0066 21.9 10.0 108 136-245 2-121 (126)
474 PRK15490 Vi polysaccharide bio 28.1 2E+02 0.0043 29.5 7.1 75 167-244 21-95 (578)
475 PF10952 DUF2753: Protein of u 27.4 3.6E+02 0.0077 22.3 7.1 49 167-216 14-77 (140)
476 PRK11619 lytic murein transgly 27.2 5.5E+02 0.012 26.6 10.3 74 170-245 295-368 (644)
477 PF04348 LppC: LppC putative l 27.1 21 0.00045 35.9 0.0 108 136-244 6-119 (536)
478 PF02064 MAS20: MAS20 protein 27.0 1.5E+02 0.0032 24.0 4.9 30 193-223 68-97 (121)
479 PF04190 DUF410: Protein of un 26.1 3.7E+02 0.008 24.2 8.0 95 144-238 131-243 (260)
480 TIGR02710 CRISPR-associated pr 26.1 2.7E+02 0.0059 27.0 7.3 50 162-213 139-195 (380)
481 PF15469 Sec5: Exocyst complex 25.9 3.9E+02 0.0085 22.3 7.9 82 131-229 98-179 (182)
482 KOG1920 IkappaB kinase complex 25.5 1.3E+02 0.0029 33.2 5.5 19 227-245 1003-1021(1265)
483 KOG3262 H/ACA small nucleolar 24.3 1E+02 0.0022 27.0 3.7 14 99-112 6-19 (215)
484 PF02064 MAS20: MAS20 protein 23.5 1.9E+02 0.004 23.4 4.9 34 158-192 68-101 (121)
485 KOG2041 WD40 repeat protein [G 23.3 2.3E+02 0.005 30.1 6.5 76 154-243 797-872 (1189)
486 KOG1464 COP9 signalosome, subu 23.0 2.4E+02 0.0051 26.6 6.0 49 133-182 41-93 (440)
487 PF14852 Fis1_TPR_N: Fis1 N-te 22.8 1.2E+02 0.0027 18.9 3.0 11 190-200 3-13 (35)
488 KOG0276 Vesicle coat complex C 22.8 3.4E+02 0.0075 28.2 7.5 66 149-215 662-747 (794)
489 smart00777 Mad3_BUB1_I Mad3/BU 22.6 4.2E+02 0.009 21.4 7.8 41 173-214 82-124 (125)
490 PF12753 Nro1: Nuclear pore co 22.5 1.4E+02 0.003 29.1 4.6 34 133-169 332-365 (404)
491 PF10255 Paf67: RNA polymerase 22.5 2.4E+02 0.0052 27.6 6.3 50 167-217 135-192 (404)
492 PF15297 CKAP2_C: Cytoskeleton 22.3 2.3E+02 0.0051 27.1 6.0 63 171-234 120-186 (353)
493 PRK15326 type III secretion sy 22.0 3.5E+02 0.0076 20.3 7.0 29 167-195 20-48 (80)
494 KOG4563 Cell cycle-regulated h 22.0 1.6E+02 0.0034 28.6 4.7 28 156-184 44-71 (400)
495 KOG2114 Vacuolar assembly/sort 21.5 3.5E+02 0.0077 29.0 7.5 82 153-241 368-449 (933)
496 PF04090 RNA_pol_I_TF: RNA pol 21.4 4.3E+02 0.0093 23.2 7.1 102 152-254 40-173 (199)
497 KOG1497 COP9 signalosome, subu 21.3 5E+02 0.011 24.9 7.8 88 129-218 113-213 (399)
498 KOG1839 Uncharacterized protei 21.0 1.5E+02 0.0031 33.1 4.8 89 129-219 983-1087(1236)
499 KOG0739 AAA+-type ATPase [Post 20.9 5.7E+02 0.012 24.6 8.1 71 135-214 7-77 (439)
500 PF15297 CKAP2_C: Cytoskeleton 20.3 6.1E+02 0.013 24.3 8.3 71 136-208 120-193 (353)
No 1
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.60 E-value=2.5e-14 Score=124.67 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=111.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD--ASRAE 209 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~--~e~A~ 209 (270)
.++.++++..|+++++.+|++..+|..+|..+. ..|++++|++.|++|++++|+++.++..+|.+++...|+ +++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 568899999999999999999999999996666 589999999999999999999999999999876554777 59999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCCCC
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPSYN 255 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~p~ 255 (270)
.+++++++.+|++..++..+|.+++..|++++|....+. +...||.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999987666 5555553
No 2
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=3e-14 Score=117.96 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=82.5
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
.+.|++++|+.+|++++.++|++..++..+|.++. ..|++++|+..|++|++++|+++.+++++|.++.. .|++++|+
T Consensus 35 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi 112 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAR 112 (144)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence 34567888888888888888888888888885555 46888888888888888888888888888866665 88888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~ 236 (270)
..|+++++++|+++..+.+++.+...+
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 888888888888888888877776543
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.53 E-value=4.7e-14 Score=138.29 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=114.0
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|..+|..+-|+..|+++|++.|+.+.+++++|+++.+ .|+..+|+.+|.+|+.+.|++++++.++|+++-+ ++.+++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~~~e~ 372 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QGKIEE 372 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hccchH
Confidence 44556899999999999999999999999999999997 6999999999999999999999999999977766 899999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCC
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQ 258 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~ 258 (270)
|..+|.+|++++|....+..++|.+|.++|+.++|..+-++.-.+.|.|-+
T Consensus 373 A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 373 ATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred HHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 999999999999999999999999999999999998765666666676644
No 4
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=9e-14 Score=122.74 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=108.9
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
|-++|++..|..-+++||+.||++..+|..+| .+++..|+.+.|.+.|++|+.++|++.+++.+||+.+.. +|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A-~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHH
Confidence 45568999999999999999999999999999 777789999999999999999999999999999988888 8999999
Q ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCC
Q 024243 209 ESYFDQAVKA--APDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNF 256 (270)
Q Consensus 209 ~~~~ekAL~~--~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f 256 (270)
..+|++|+.. .+.....+.+++.+..++|+.+.++...+.....+|.|
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 9999999974 34578899999999999999999987655533334444
No 5
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=125.39 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=100.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
+++|.+|+..|.+||+++|+|+.++.+.|.++. .+|.++.|++.|+.||.+||++..+|.+|+.+++. +|++++|++.
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~a 171 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIEA 171 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHHH
Confidence 479999999999999999999999999997777 58999999999999999999999999999966666 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADEDE 240 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~e 240 (270)
|+|||+++|++..+..++..+-..+++..
T Consensus 172 ykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 172 YKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999888888766
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=1.1e-13 Score=114.53 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024243 138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217 (270)
Q Consensus 138 A~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~ 217 (270)
-..+|+++++++|++ +..+|..+.. .|++++|+.+|++++.++|.+..++..+|.++.. .|++++|+..|+++++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQ-EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence 357899999999996 4567867774 7999999999999999999999999999977777 9999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243 218 AAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN 255 (270)
Q Consensus 218 ~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~ 255 (270)
++|+++.+++++|.++...|+.++|....+..-...|.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999765553333343
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.48 E-value=8e-14 Score=136.71 Aligned_cols=127 Identities=19% Similarity=0.168 Sum_probs=73.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
.++.+++|..+|.++++.+|+.+.+++++|.++. .+|++++|+.+|+.||.++|+.++++.++|+.+-. +|+...|+.
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k-qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke-~g~v~~A~q 443 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK-QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE-MGDVSAAIQ 443 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH-hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH-hhhHHHHHH
Confidence 3455556666666666666666666666663333 35666666666666666666666666666655554 566666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCCC
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQR 259 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~~ 259 (270)
+|.+|+.++|..+++..++|.+|.+.|+..+|.+.-+....+.|.|+++
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 6666666666666666666666666666666554333333345555554
No 8
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=8.1e-13 Score=131.24 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=101.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
..+++++|+.+++++++++|+++.++..+|.++. ..|++++|+++|++|++++|+++.+++.+|.++.. .|++++|+.
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence 3457899999999999999999999999996665 57999999999999999999999999999977777 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|+++++++|.++.+...++.+++..|++++|....+.
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999888777777778888998888765444
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=7.4e-13 Score=132.65 Aligned_cols=119 Identities=15% Similarity=0.118 Sum_probs=83.5
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
.+|...|++++|+..|+++++++|++..++..+|.++. ..|++++|+.+|+++++++|+++.+++.+|.+++. .|+++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~ 416 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFA 416 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence 34455667777777777777777777777777775555 36777777777777777777777777777766665 77777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
+|+.+|+++++++|++..++..+|.++..+|+++++....+
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777777777777777777777777777777665433
No 10
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=7.4e-13 Score=116.97 Aligned_cols=119 Identities=23% Similarity=0.276 Sum_probs=109.3
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHK 203 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~g 203 (270)
.+|+..|+.+.|.+.|++|+.++|++..+++|||.+|+. +|++++|.+.|++|++ +|. -...+.+++.+.++ +|
T Consensus 77 ~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~-~g 153 (250)
T COG3063 77 HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALK-AG 153 (250)
T ss_pred HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhh-cC
Confidence 567888999999999999999999999999999999995 8999999999999998 664 55789999966666 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+++.|..+|+++|+++|+++.....++..++..|++..|....+.
T Consensus 154 q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 154 QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 999999999999999999999999999999999999999876554
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.42 E-value=1.6e-12 Score=130.18 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=110.0
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|+++.+++.+|.+++ ..|++++|+++|+++++++|++..++..+|.+++. +|++++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~e 451 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIAS 451 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHHH
Confidence 3456789999999999999999999999999997766 58999999999999999999999999999977777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|+.+|+++++.+|+++.++..+|.++..+|+++++....+.
T Consensus 452 A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999865444
No 12
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.42 E-value=1.5e-12 Score=104.57 Aligned_cols=107 Identities=15% Similarity=0.042 Sum_probs=96.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243 140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (270)
Q Consensus 140 ~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~ 219 (270)
+.|+++++.+|++..+...+|..++ ..|++++|.++++++++++|+++.++..+|.+++. ++++++|+.+|+++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999996666 47999999999999999999999999999977777 899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 220 PDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 220 P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|+++.+++.+|.+++..|+.+++....+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDL 110 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999866554
No 13
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=2.8e-12 Score=117.95 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=98.4
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...|++++|+..|+++++++|+++.+++.+|.++. ..|++++|++.|++|++++|++..++.++|.+++. .|++++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~e 150 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYEL 150 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHH
Confidence 4456689999999999999999999999999996666 58999999999999999999999999999977777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
|+..|+++++.+|+++.....+ .+....++.+++....
T Consensus 151 A~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 151 AQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHH
Confidence 9999999999999998532222 2344556677777554
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=3e-12 Score=127.16 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=107.3
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.+...+++++|+.+|+++++++|+++.+++.+|.++. ..|++++|+++|++|++++|.++.++..++.+++. .|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHH
Confidence 4455789999999999999999999999999997776 48999999999999999999999887777767777 899999
Q ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHhccCCC
Q 024243 208 AESYFDQAVKAA-PDDCYVLASHAHFLWDADEDEEDEQVGEEP 249 (270)
Q Consensus 208 A~~~~ekAL~~~-P~~~~~~~~la~il~~~Ge~eea~~~~e~~ 249 (270)
|+.+++++++.+ |+++.++..++.++..+|+.++|.......
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 999999999885 789999999999999999999999765543
No 15
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.38 E-value=7.1e-12 Score=118.41 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=97.7
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
..+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++||+++|+++.+++.+|.+++. +|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHH
Confidence 4579999999999999999999999999997777 58999999999999999999999999999977777 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDAD 237 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~G 237 (270)
+|+++++++|++..+...++.+...+.
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988876663
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.37 E-value=7.3e-12 Score=131.71 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=109.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
|++++|+..|+++++++|+ +.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++.. .|++++|+.+|
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 8999999999999999997 999999996666 58999999999999999999999999999977777 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243 213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN 255 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~ 255 (270)
+++++++|+++.+++++|.++...|+.+++....+..-...|.
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999876664344444
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=4.6e-13 Score=131.87 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=96.3
Q ss_pred cccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
-|++|..+++.+.|+++|++|+++||+.+.++..+|.-+. .+.++++|..+|++||..||.+..+|+.+|.++.+ +++
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek 504 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEK 504 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cch
Confidence 5678888889999999999999988888888888874444 46788888888888888888888888888866666 788
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++.|+-+|++|++++|.+-.++..++.++.+.|+.++|-...+.
T Consensus 505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 88888888888888887777777788888777777777765544
No 18
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.36 E-value=9.3e-12 Score=108.48 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=88.3
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD--LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd--~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
+.|...+++++|+..|+++++++|+++.++..+|.+++...|+ +++|.+.++++++++|++..+++.+|..+++ +|+
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~ 159 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QAD 159 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCC
Confidence 4556778999999999999999999999999999877555677 5999999999999999999999999987887 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHH
Q 024243 205 ASRAESYFDQAVKAAPDDCYV 225 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~ 225 (270)
+++|+.+|+++++.+|.+..-
T Consensus 160 ~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 160 YAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHHHHhhCCCCccH
Confidence 999999999999999875543
No 19
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.34 E-value=1.9e-11 Score=98.09 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=90.3
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+..|+++++.+|+++.++..+|.+++. .|++++|+.+|+++++++|.++..++.+|.+++. .|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHH
Confidence 344567899999999999999999999999999977774 7999999999999999999999999999987777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH
Q 024243 207 RAESYFDQAVKAAPDDCYVLAS 228 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~ 228 (270)
+|+.+|+++++.+|++......
T Consensus 103 ~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 103 SALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred HHHHHHHHHHHhccccchHHHH
Confidence 9999999999999988764433
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.5e-11 Score=103.88 Aligned_cols=119 Identities=24% Similarity=0.322 Sum_probs=90.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+..++++++.+|++..++..+|.++. ..|++++|+++|+++++++|++..++.+++.++.. +|+++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~ 116 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYE 116 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHH
Confidence 33455688999999999999999999999888886555 47999999999999999999888888888866665 77777
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 207 RAESYFDQAVKAA--PDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 207 ~A~~~~ekAL~~~--P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
+|+.+|++++... +.....+..++.+++..|+.+++....+
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777643 3445566667777777777666665433
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.4e-12 Score=128.46 Aligned_cols=123 Identities=18% Similarity=0.161 Sum_probs=112.4
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
..+.++|.|..+|++||..+|.+..+|+.+|.++. ++++++.|+-+|++|+++||.+..++..++.++.+ .|+.++|+
T Consensus 466 ~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL 543 (638)
T KOG1126|consen 466 IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKAL 543 (638)
T ss_pred hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHH
Confidence 44679999999999999999999999999996555 68999999999999999999999999999966666 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCC
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSY 254 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p 254 (270)
.+|++|+.++|.++...+..+.+++..+++++|-.++|+++.+-|
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999988888655544
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=3e-11 Score=102.03 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=106.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~ 204 (270)
..|...+++++|+.+|+++++.+|.+..++.++|.++. ..|++++|+++|++++... +.....+..++.+++. .|+
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 150 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGD 150 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCC
Confidence 45566789999999999999999999999999997776 4799999999999999864 5667888999977777 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+++|..+|+++++.+|++..++..++.++...|+++++....+.
T Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999866544
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.33 E-value=2.8e-12 Score=115.97 Aligned_cols=121 Identities=22% Similarity=0.241 Sum_probs=91.0
Q ss_pred cccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
-+.+|.+.|+.++|+.+|+++++++|+++.++..++.++. ..|++++|.+.+....+..|.++..+..+|.++.. .|+
T Consensus 152 ~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~ 229 (280)
T PF13429_consen 152 LAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGR 229 (280)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-ccc
Confidence 3456677889999999999999999999999999986665 47899998888888888888888899999977776 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
+++|+.+|+++++.+|+|+.++..+|.++...|+.++|.....
T Consensus 230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999986543
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.31 E-value=1.7e-11 Score=124.26 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=100.5
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLK----AEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~e----A~e~~ekAIeldP~n~~al~~lA~ll~~~~ 202 (270)
..+...|++++|+..|+++++.+|+++.++.++|..+.. .|++++ |+.+|+++++++|++..++..+|.++.. .
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~ 297 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-T 297 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-C
Confidence 344556788899999999999999998888888866664 788875 7888999999999988899899877777 8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|++++|+.+++++++++|+++.++..++.++...|+++++....+.
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8999999999999999998888888899999888988888866544
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=3.5e-11 Score=110.67 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=101.6
Q ss_pred CChHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 133 HGNNSTDLYYQKMIQADP---R-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP---~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
...+.++..+.++|...| . .+.+|+.+|..+. ..|++++|+..|++|++++|+++.+|..+|.++.. .|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 467899999999997444 3 3788999995555 58999999999999999999999999999976666 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+..|+++++++|++..++.++|.+++..|+++++....+.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999876555
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.27 E-value=5.1e-11 Score=119.56 Aligned_cols=113 Identities=23% Similarity=0.316 Sum_probs=62.6
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
...|++++|+.+|+++++.+|+++.++.+++..+. ..|+ .+|++++++++++.|+++.++..+|.+++. .|++++|+
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~ 857 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRAL 857 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence 33455555555555555555555555555553333 2455 555555555555555555555555544444 56666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.+|+++++.+|.++.++.+++.+++..|+.+++...
T Consensus 858 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 858 PLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666665566666666666666665555543
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.8e-11 Score=114.84 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=108.6
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
++|...++.++|+.+|++|+++||....+|..+|.-+.+ ..+...|++.|++||+++|.|..+|+.+|..+.. ++-..
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~ 415 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHF 415 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchH
Confidence 577777899999999999999999999999999977775 6999999999999999999999999999976666 89999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
=|+-+|++|++..|+|..+|..+|.+|.++++.++|...
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999999999999999999999999865
No 28
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.26 E-value=8.1e-11 Score=119.84 Aligned_cols=113 Identities=10% Similarity=0.013 Sum_probs=106.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
+.|.+++|...++.+++.+|++..++.+++.++.+ ++++++|+..+++++..+|+++.++..+|.++.+ +|++++|++
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHH
Confidence 35899999999999999999999999999988885 7999999999999999999999999999965555 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+|++++..+|+++.++..+|.++...|+.++|...
T Consensus 176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999998854
No 29
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=1.1e-10 Score=98.11 Aligned_cols=86 Identities=9% Similarity=-0.047 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.|++++|+..|+-+..+||.+...|++||.++ +.+|+|.+|+..|.+|+.++|+|+.++.++|.+++. .|+.+.|+..
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A~~a 125 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYAIKA 125 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHHH
Confidence 47899999999999999999999999999444 467999999999999999999999999999966666 9999999999
Q ss_pred HHHHHHhC
Q 024243 212 FDQAVKAA 219 (270)
Q Consensus 212 ~ekAL~~~ 219 (270)
|+.|+...
T Consensus 126 F~~Ai~~~ 133 (157)
T PRK15363 126 LKAVVRIC 133 (157)
T ss_pred HHHHHHHh
Confidence 99998876
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.24 E-value=6.7e-11 Score=119.95 Aligned_cols=119 Identities=19% Similarity=0.117 Sum_probs=107.0
Q ss_pred ccccCCChHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024243 128 WDPNNHGNNS----TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK 203 (270)
Q Consensus 128 ~Ye~~gd~~e----A~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g 203 (270)
.|...|++++ |+.+|+++++++|+++.++..+|.++. ..|++++|+.+|+++++++|+++.++..++.++.. .|
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G 332 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VG 332 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC
Confidence 3445677775 899999999999999999999997777 48999999999999999999999999999977777 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++++|+..|+++++.+|++..++..++.++...|+.+++....+.
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999988888889999999999999876444
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.22 E-value=8.6e-11 Score=123.72 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=107.3
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..+.+.|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|++|++++|+++.+++++|.++.. +|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHH
Confidence 445667999999999999999999999999999977775 7999999999999999999999999999977777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+|+.+|+++++++|++..+...++.++....+.+.+-+
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887777765
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.21 E-value=1.4e-10 Score=124.32 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=105.1
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW--------- 199 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~--------- 199 (270)
+...+++++|+.+|+++++++|+++.++..+|.++. .+|++++|+++|+++++++|++..++..++.++.
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 345689999999999999999999999999997766 5899999999999999999999988876664421
Q ss_pred --------------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 200 --------------------------------QSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 200 --------------------------------~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
...|++++|+.+|+++++++|+++.+++.++.+|+..|+.+++....+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 137999999999999999999999999999999999999999997655
Q ss_pred C
Q 024243 248 E 248 (270)
Q Consensus 248 ~ 248 (270)
.
T Consensus 520 ~ 520 (1157)
T PRK11447 520 R 520 (1157)
T ss_pred H
Confidence 5
No 33
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=9.9e-11 Score=83.84 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 024243 151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-DASRAESYFDQAVKAAP 220 (270)
Q Consensus 151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-~~e~A~~~~ekAL~~~P 220 (270)
.++.+|..+|..++. .|++++|+++|++||+++|+++.+++++|.+++. +| ++++|+.+|+++++++|
T Consensus 1 e~a~~~~~~g~~~~~-~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQ-QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 367899999977774 8999999999999999999999999999977777 88 79999999999999998
No 34
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.19 E-value=1.4e-10 Score=124.22 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=104.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH--------------HH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV--------------LS 192 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a--------------l~ 192 (270)
..+...|++++|+.+|+++++++|+++.++..+|.++. .+|++++|+++|+++++++|++... +.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 44566789999999999999999999999999997776 5899999999999999999987532 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
..+.++.. .|++++|+.+|+++++++|++..++..+|.++...|++++|....+.
T Consensus 356 ~~g~~~~~-~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 356 QQGDAALK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555666 89999999999999999999999999999999999999999976555
No 35
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.19 E-value=2.5e-10 Score=96.10 Aligned_cols=99 Identities=15% Similarity=0.032 Sum_probs=90.0
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243 145 MIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC 223 (270)
Q Consensus 145 ALeld-P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~ 223 (270)
+..++ ++.-..++.+|..++. .|++++|+.+|+-+..+||.+...|++|| ++.+.+|++++|+..|.+|+.++|+++
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~-~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG-~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLME-VKEFAGAARLFQLLTIYDAWSFDYWFRLG-ECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44567 7888899999977775 89999999999999999999999999999 555559999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHhc
Q 024243 224 YVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 224 ~~~~~la~il~~~Ge~eea~~~ 245 (270)
..++++|.+++..|+.+.+...
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~a 125 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKA 125 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999853
No 36
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.19 E-value=3.5e-10 Score=101.46 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=106.5
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
..+|++.+|+..++++.+++|+|..+|..+|.+|- ..|++++|...|.+|+++.|+++.++.|++..++. .|++++|+
T Consensus 111 ~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~ 188 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAE 188 (257)
T ss_pred HHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHH
Confidence 45789999999999999999999999999995555 58999999999999999999999999999977777 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.++.++...-+.+..+..+++.+...+|+.+++++-
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999888999999999999999999999864
No 37
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.18 E-value=4.7e-10 Score=86.94 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=85.8
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQS 201 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~ 201 (270)
.+..++++++|+..|+++++.+|++ +.+++.+|.++.. .|++++|+++|++++..+|++ ..++..+|.++..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~- 88 (119)
T TIGR02795 11 LVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE- 88 (119)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-
Confidence 4556789999999999999999987 5788889977774 799999999999999999885 6789999977776
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243 202 HKDASRAESYFDQAVKAAPDDCYVLAS 228 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~ 228 (270)
.+++++|+.+++++++..|++..+...
T Consensus 89 ~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred hCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 999999999999999999998776543
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.16 E-value=2.9e-10 Score=114.15 Aligned_cols=120 Identities=20% Similarity=0.215 Sum_probs=108.2
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+..|+++++.+|++..++..+|..+. ..|++++|++.++++++.+|.+..++..++.+++. .|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 210 (899)
T TIGR02917 133 LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNIE 210 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCHH
Confidence 44556789999999999999999999999999997776 47999999999999999999999999999977777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|+.+|+++++.+|++..++..++.++...|+++++....+.
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 252 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADA 252 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999866544
No 39
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.15 E-value=3.5e-10 Score=99.23 Aligned_cols=117 Identities=13% Similarity=0.005 Sum_probs=71.7
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-------hCCHHHHHHHHHHHHHhCCCCHHHH------
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPL---LLSNYARFLKEA-------RGDLLKAEEYCARAILMSPNDGNVL------ 191 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~---al~~lA~~l~~~-------~Gd~~eA~e~~ekAIeldP~n~~al------ 191 (270)
.|...+++++|+..|+++++.+|+++. +++.+|.+++.. .|++++|++.|+++++.+|++..++
T Consensus 79 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 79 AYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158 (235)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence 334456677777777777777666654 456666554431 1566667777777777777665432
Q ss_pred -----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHhc
Q 024243 192 -----------SMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 192 -----------~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~~~la~il~~~Ge~eea~~~ 245 (270)
..+|.+++. .|++.+|+..|+++++..|++ +.+++.++.++..+|+++++...
T Consensus 159 ~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 159 DYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233444444 677777777777777765543 45667777777777776666654
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.14 E-value=6.9e-10 Score=114.37 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=107.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+.+|+++++++|+++.++..++.++. ..|++++|+.+++++++.+|+++. +..+|.++.. .|+++
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~ 133 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHW 133 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHH
Confidence 34566789999999999999999999999999997676 479999999999999999999999 9999977776 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|+..|+++++.+|++..++..++.++...++.++|....+.
T Consensus 134 ~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 134 DELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 999999999999999999999999999998888877765554
No 41
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.14 E-value=3.5e-10 Score=80.69 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=63.6
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
...+++++|+.+++++++..|.+..++..+|.++.. .+++++|+++|++++...|.+..++..++.++.. .+++++|.
T Consensus 11 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~ 88 (100)
T cd00189 11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEAL 88 (100)
T ss_pred HHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHH
Confidence 345677777777777777777777777777755553 5777777777777777777777777777765555 67777777
Q ss_pred HHHHHHHHhCC
Q 024243 210 SYFDQAVKAAP 220 (270)
Q Consensus 210 ~~~ekAL~~~P 220 (270)
.++.++++.+|
T Consensus 89 ~~~~~~~~~~~ 99 (100)
T cd00189 89 EAYEKALELDP 99 (100)
T ss_pred HHHHHHHccCC
Confidence 77777777665
No 42
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.13 E-value=7.5e-10 Score=97.15 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=101.3
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQS 201 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---al~~lA~ll~~~ 201 (270)
.|...+++++|+..|+++++.+|+++ .+++.+|.++. ..|++++|+..|+++++.+|+++. +++.++.+++..
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence 34557899999999999999999986 57799997777 489999999999999999998887 688889777762
Q ss_pred -------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcHHHHhccCC
Q 024243 202 -------HKDASRAESYFDQAVKAAPDDCYVL-----------------ASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 202 -------~g~~e~A~~~~ekAL~~~P~~~~~~-----------------~~la~il~~~Ge~eea~~~~e~ 248 (270)
.+++++|+..|+++++.+|++..+. ..++.+++..|++.++....+.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 121 IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 2789999999999999999986543 3568889999999999865444
No 43
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.10 E-value=9.1e-10 Score=102.92 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=100.5
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-GNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-~~al~~lA~ll~~~~g~~e~ 207 (270)
|...+++++|+.+|+++++.+|++..++..+|..+. ..|++++|+++|+++++.+|.+ ..++..++.++.. .|++++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~ 267 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDEAE 267 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHHH
Confidence 345689999999999999999999999999996666 4799999999999999999876 4567788877776 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|+.+++++++.+|+...+ ..++.++...|+.++|....+.
T Consensus 268 A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 268 GLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999977544 8899999999999999876554
No 44
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.3e-09 Score=99.59 Aligned_cols=123 Identities=12% Similarity=0.084 Sum_probs=109.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD--ASRAES 210 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~--~e~A~~ 210 (270)
.+.+..+.-++.-|+.||+|..-|..||.++. .+|+++.|...|.+|+++.|+|++++..+|.+++...+. ..++..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 46889999999999999999999999997777 589999999999999999999999999999998775443 458999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCCCCC
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPSYNF 256 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~p~f 256 (270)
.|+++++.+|.|..+++.++..++.+|++.++...-+. +...||+-
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999977555 66666653
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.10 E-value=6e-10 Score=104.14 Aligned_cols=117 Identities=9% Similarity=0.009 Sum_probs=75.0
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHc
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-----VLSMYGDLIWQSH 202 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~-----al~~lA~ll~~~~ 202 (270)
.|...|++++|+.+|+++++.+|.+..++..++.++. ..|++++|++.++++++.+|.+.. .+..++.++.. .
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~ 193 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA-R 193 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-C
Confidence 3445567777777777777777776666666665444 357777777777777666665422 34455544444 6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+++++|+.+|+++++.+|++..++..++.++...|+.++|....
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 237 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEAL 237 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 67777777777777666666666666777777777666666543
No 46
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.08 E-value=5.1e-10 Score=79.40 Aligned_cols=64 Identities=23% Similarity=0.422 Sum_probs=55.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC 223 (270)
Q Consensus 158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~ 223 (270)
.+|..++. .|++++|+++|+++++.+|+++++++.+|.+++. +|++++|+.+|+++++++|+++
T Consensus 2 ~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQ-QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHH-CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence 56766664 7999999999999999999999999999988887 9999999999999999999875
No 47
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=3.2e-10 Score=110.67 Aligned_cols=114 Identities=13% Similarity=0.057 Sum_probs=84.7
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
|..|-..++|++|+.+|+.||+.+|+|...|+.||..+. .-.+..+|++.|+||+++.|++..+++++| +.+.++|.|
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlg-IS~mNlG~y 514 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLG-ISCMNLGAY 514 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhh-hhhhhhhhH
Confidence 356666778888888888888888888888888885555 346778888888888888888888888888 444448888
Q ss_pred HHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCcHH
Q 024243 206 SRAESYFDQAVKAAPD----------DCYVLASHAHFLWDADEDEE 241 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~----------~~~~~~~la~il~~~Ge~ee 241 (270)
.+|+.+|-.||.+.+. +..+|..+-.++...++.|-
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 8888888888877654 12577777777777777663
No 48
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=3.2e-09 Score=99.23 Aligned_cols=111 Identities=9% Similarity=0.043 Sum_probs=78.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA--SRA 208 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G-d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~--e~A 208 (270)
.+..++|+..+.++|+++|++..+|...+.++.. ++ ++++|+.+++++|+.+|++..+|...+.++.. .++. +++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHH
Confidence 3466777777777777777777777777755553 45 56777777777777777777777777755544 5543 566
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+.+++++++.+|++..+|...+.++...++++++.+
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHH
Confidence 777777777777777777777777777777666654
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.7e-09 Score=103.71 Aligned_cols=117 Identities=14% Similarity=0.136 Sum_probs=107.6
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
+=|-..++...|+..|++|++++|.+-.+|+.+|+.+. ..+-..-|+-+|++|++..|+|...|..+|.++-. .++.+
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~ 449 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LNRLE 449 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHH
Confidence 44556689999999999999999999999999996665 57999999999999999999999999999987765 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+|+.+|.+|+...-.+..++..+|.+|.++++.++|...
T Consensus 450 eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 450 EAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999988999999999999999999999853
No 50
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-09 Score=105.61 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=98.5
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
-+...++|..|+.+|.+||+.+|+++.++.|.|.++. .++++..|++.++++|++||++..+|..-|.++.. +.+|++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~ydk 444 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEYDK 444 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHH
Confidence 3455689999999999999999999999999996666 68999999999999999999999999999966666 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~ 236 (270)
|++.|+++++.+|++..+...+..++..+
T Consensus 445 Aleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 445 ALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999998864
No 51
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.02 E-value=7.5e-10 Score=82.77 Aligned_cols=81 Identities=19% Similarity=0.318 Sum_probs=66.9
Q ss_pred CCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
+++++.|+.+|+++++.+|. +..+++.+|.+++. .|+|++|++++++ ++.+|.+....+.+|.+++. +|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 56889999999999999985 46677778988885 7999999999988 88888888888888888887 99999999
Q ss_pred HHHHHH
Q 024243 210 SYFDQA 215 (270)
Q Consensus 210 ~~~ekA 215 (270)
.+|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998875
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.02 E-value=1.1e-09 Score=99.07 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=98.2
Q ss_pred cccccCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQAD--PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeld--P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
..|...++++++...++++.+.. +.++.+|..+|.++. ..|+.++|+++|++|++++|+|..++..+++++.. .|+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~ 195 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGD 195 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCC
Confidence 34556789999999999988765 778999999996666 58999999999999999999999999999988877 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++++...+....+..|+++.++..+|.++..+|+.++|....+.
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 99999999999999899999999999999999999999865444
No 53
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=4.8e-09 Score=101.03 Aligned_cols=114 Identities=17% Similarity=0.114 Sum_probs=105.9
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
...+++++|+..++..+...|+|+.++-..+..+.+ .++..+|.+.+++++.++|+.+..+.+||..++. .|++.+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHH
Confidence 345799999999999999999999999999977764 7999999999999999999999999999988888 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.++++.+..+|+++..|..++..|-.+|+..++...
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 999999999999999999999999999998777643
No 54
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.01 E-value=6.4e-09 Score=87.41 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=34.5
Q ss_pred cCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~ 199 (270)
.++++++|+..|++++.+.|+. +.++.++|.++. ..|++++|+++|++|++++|.+...+.+++.++.
T Consensus 47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3445555555555555554432 234555553333 3455555555555555555555555555554444
No 55
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.01 E-value=6e-09 Score=88.10 Aligned_cols=91 Identities=19% Similarity=0.332 Sum_probs=49.7
Q ss_pred ccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD-- 204 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~-- 204 (270)
...+++++|+.+|+++++++|+. ..++.++|.++. ..|++++|+++|+++++++|++..++..++.++.. .++
T Consensus 46 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~ 123 (172)
T PRK02603 46 QADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RGEKA 123 (172)
T ss_pred HHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChH
Confidence 34456666666666666554442 345555553333 35666666666666666666666666556544443 444
Q ss_pred ------------HHHHHHHHHHHHHhCCCC
Q 024243 205 ------------ASRAESYFDQAVKAAPDD 222 (270)
Q Consensus 205 ------------~e~A~~~~ekAL~~~P~~ 222 (270)
+++|++++++++..+|++
T Consensus 124 ~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 124 EEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred hHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 345555555555555554
No 56
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.01 E-value=3e-09 Score=75.76 Aligned_cols=91 Identities=18% Similarity=0.243 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
+++.+|..+.. .|++++|+..++++++..|++..++..+|.++.. .+++++|+.+|+++++..|.+..++..++.++.
T Consensus 2 ~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYK-LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 46778866664 7999999999999999999999999999987777 899999999999999999999999999999999
Q ss_pred HcCCcHHHHhccC
Q 024243 235 DADEDEEDEQVGE 247 (270)
Q Consensus 235 ~~Ge~eea~~~~e 247 (270)
..|+.+++....+
T Consensus 80 ~~~~~~~a~~~~~ 92 (100)
T cd00189 80 KLGKYEEALEAYE 92 (100)
T ss_pred HHHhHHHHHHHHH
Confidence 9999888876543
No 57
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.00 E-value=5.3e-09 Score=107.86 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=106.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.|+.++|+..|++++..+|....++..+|.++. ..|++++|+++|+++++++|+++.++..++.++.. .|++++|+.+
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~g~~~eA~~~ 105 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-AGQYDEALVK 105 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 479999999999999999999999999996666 58999999999999999999999999999977776 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++++++.+|++.. +..++.++...|+.+++....+.
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999 99999999999999999877665
No 58
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.00 E-value=2.5e-09 Score=101.06 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243 157 SNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 157 ~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~ 236 (270)
...|..++ ..|+|++|+++|++||+++|++..++.++|.++.. +|++++|+.++++|++++|+++.+++.+|.+++.+
T Consensus 6 ~~~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 34565666 47999999999999999999999999999977777 99999999999999999999999999999999999
Q ss_pred CCcHHHHhccCC
Q 024243 237 DEDEEDEQVGEE 248 (270)
Q Consensus 237 Ge~eea~~~~e~ 248 (270)
|++++|....+.
T Consensus 84 g~~~eA~~~~~~ 95 (356)
T PLN03088 84 EEYQTAKAALEK 95 (356)
T ss_pred CCHHHHHHHHHH
Confidence 999999876554
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.2e-09 Score=105.17 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=82.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
+..+..+-.+.|.+|..+||.|+.+++..|++.+ ..++|++|+.-|++|+.++|++.-++..++-+.|+ ++++++++.
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~ 449 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAESMK 449 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHHHHH
Confidence 3355666667777777777777777777776555 36777777777777777777777777777766666 667777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.|+.+.+..|+.+.++...|.++-++++++.|.+.
T Consensus 450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 77777777777777777777777777777777643
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.4e-09 Score=103.19 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=107.6
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
.||...|+.-.|...++++|+++|.+...+..+|..+. .+.+..+-.+.|.+|..+||+|+++|+..|.+.+. .++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~-d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-L~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA-DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL-LQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHh-hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH-HHHHH
Confidence 56777788899999999999999999998888885555 47999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+|+..|++++.++|++...+..++.+++++++.++....
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~ 450 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKT 450 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888754
No 61
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.98 E-value=3.6e-09 Score=95.02 Aligned_cols=114 Identities=19% Similarity=0.172 Sum_probs=103.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.|+-+.+..+..+.+..+|.+..++..+|..... .|+|.+|+..+++|..++|+|.++|..+|.+|.+ .|+++.|...
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~a 156 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRA 156 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHHH-hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHH
Confidence 3566778888889899999999999889977774 8999999999999999999999999999955555 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
|.+++++.|+++.+..+++..++-.|+.+.++..+.
T Consensus 157 y~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 157 YRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred HHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999986543
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.97 E-value=4.5e-09 Score=107.22 Aligned_cols=122 Identities=9% Similarity=0.016 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
..+++.-+....+..|+++.++.+||.+.. .+|.+++|+..++++++++|++..++.+++.++.+ ++++++|+..+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~ 145 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIEL 145 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 344444455555678999999999996666 58999999999999999999999999999988888 9999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCC
Q 024243 215 AVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQ 258 (270)
Q Consensus 215 AL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~ 258 (270)
++..+|+++.++..+|.++.++|++++|...-+.+-..+|.|..
T Consensus 146 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 146 YFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFEN 189 (694)
T ss_pred HhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999999999999999765553334555443
No 63
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.97 E-value=7e-09 Score=105.50 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=108.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
|++++|...+.++|+++|.++.+|+.|| .+++.+||.++|..+.-.|-.++|+|.+.|..++.+..+ +|++++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~-~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLG-EIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHH-HHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHHH
Confidence 8999999999999999999999999999 555568999999999999999999999999999977766 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCCC
Q 024243 213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPSY 254 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~p 254 (270)
.+|++.+|.+....+..+.+|.++|+...|.+.-.. .+..||
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999999888865333 444444
No 64
>PRK11906 transcriptional regulator; Provisional
Probab=98.96 E-value=6.7e-09 Score=100.16 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=105.5
Q ss_pred ChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh--------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243 134 GNNSTDLYYQKMI---QADPRNPLLLSNYARFLKEA--------RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (270)
Q Consensus 134 d~~eA~~~y~kAL---eldP~n~~al~~lA~~l~~~--------~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~ 202 (270)
+.+.|..+|.+++ +++|+.+.++..+|.+.... ..+..+|.++.++|+++||+|+.++..+|.+++. .
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-S 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-h
Confidence 5678899999999 99999999999999766543 2356789999999999999999999999988888 8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCC
Q 024243 203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSY 254 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p 254 (270)
++++.|...|++|+.++|+.+.+++..|.++...|+.+++...++..-.++|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 8899999999999999999999999999999999999999987766333333
No 65
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=6.8e-09 Score=98.23 Aligned_cols=116 Identities=18% Similarity=0.143 Sum_probs=99.1
Q ss_pred ccccccCCChHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADP----RN-----------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV 190 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP----~n-----------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a 190 (270)
|..|.+.++|..|...|++++..=. .+ ..++.|+|.++. ..++|.+|++.|.++|+++|+|..+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhH
Confidence 4456667899999999999887532 11 256778995555 6899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
++..|.++.. +++|+.|+..|++|++++|+|..+...+..+..+..++.+.+
T Consensus 294 LyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 294 LYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888 999999999999999999999999999998888877766665
No 66
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=1.6e-08 Score=94.46 Aligned_cols=101 Identities=8% Similarity=0.044 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDL--LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~--~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
++++++.+++++++.+|++..+|+..+.++. ..++. ++++++++++|++||+|..+|...++++.. .+++++|+++
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHH
Confidence 6899999999999999999999999995555 46763 788999999999999999999999987777 8999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~ 236 (270)
++++|+.+|++..+|..++.++...
T Consensus 165 ~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 165 CHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999999999999999998876
No 67
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.6e-09 Score=103.48 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=100.0
Q ss_pred ChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADP--RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 134 d~~eA~~~y~kALeldP--~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.+..-.++|-.|...+| .++++...|| +||...|+|++|+.+|+.||..+|+|.-.|..||-.+.. -.+.++|+..
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG-VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLG-VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhH-HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence 56777888888999999 7999999999 555568999999999999999999999999999955554 8889999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
|.+||++.|....+++++|..++.+|.++||.+.
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999864
No 68
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=1.6e-08 Score=78.19 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVL 226 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~ 226 (270)
+..++.+|..+.. .|++++|+++|+++++.+|++ ..+++.+|.+++. .+++++|+.+|++++..+|++ +.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLK-AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 4567888867764 799999999999999999987 5788999988777 999999999999999999985 6789
Q ss_pred HHHHHHHHHcCCcHHHHhccCC
Q 024243 227 ASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 227 ~~la~il~~~Ge~eea~~~~e~ 248 (270)
+.++.++...++.+++....+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHH
Confidence 9999999999999999876554
No 69
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.91 E-value=1.6e-08 Score=104.93 Aligned_cols=124 Identities=12% Similarity=0.025 Sum_probs=100.1
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
-++|+++.|+..|+++++.+|+++.++..++.++. ..|++++|+.+|++++.-+|.....+..+|.++.. +|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-EKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence 44689999999999999999999755447774555 47999999999999993333444444444645555 89999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN 255 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~ 255 (270)
++|+++++.+|+++.++..++.++.+.++.+++....+.+....|.
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 9999999999999999999999999999999998876665555554
No 70
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.89 E-value=6e-09 Score=74.18 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=46.0
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
.|++++|+++|+++++.+|++.+++..+|.+++. .|++++|..++++++..+|+++.++..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 5777777777777777777777777777766666 777777777777777777776666665554
No 71
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.86 E-value=4.1e-08 Score=82.44 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=91.1
Q ss_pred CChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRN--PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n--~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~ 207 (270)
+.+..+...+.+.++.++.+ ..+++.+|..+. ..|++++|+..|++|+.+.|+. +.++.++|.++.. .|++++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~e 90 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTK 90 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHH
Confidence 45778888887777777776 677788995555 5799999999999999998763 4589999966666 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCcHHHH
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLW-------DADEDEEDE 243 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~-------~~Ge~eea~ 243 (270)
|+.+|++++.++|.....+.+++.++. .+|+.+++.
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence 999999999999999999999999999 666766553
No 72
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.86 E-value=3.1e-09 Score=75.31 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=53.5
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG 188 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~ 188 (270)
.|...|++++|+..|+++++.+|+++.+++.+|.+++ .+|++++|+++|+++++++|+++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 3456789999999999999999999999999997777 58999999999999999999985
No 73
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.84 E-value=7.2e-08 Score=92.47 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=99.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.+.++.|+..|++..+.+|+ +...+++++.. .++-.+|+++++++|+.+|++.+.+...|..+.. .++++.|+.+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~i 256 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLL-MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEI 256 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 47899999999999999986 44457766664 6899999999999999999999999999988887 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
.++|++..|++...|+.++.+|..+|++++|-..+
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999997543
No 74
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.9e-08 Score=90.02 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=87.6
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
+.|-.+++++.|...|++++++.|+|+.++..||.+++...| .-.+|.+++++|+.+||+|..+++.||..+++ .|+
T Consensus 164 ~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~ 242 (287)
T COG4235 164 RAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGD 242 (287)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-ccc
Confidence 445678999999999999999999999999999999987554 56889999999999999999999999988888 999
Q ss_pred HHHHHHHHHHHHHhCCCCHH
Q 024243 205 ASRAESYFDQAVKAAPDDCY 224 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~ 224 (270)
|.+|+..+++.++..|.+..
T Consensus 243 ~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 243 YAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999886543
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.83 E-value=9.6e-08 Score=87.00 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=82.2
Q ss_pred cCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCC
Q 024243 131 NNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~g~ 204 (270)
..+++++|+..|+++++.+|++ +.+++.+|.+++ ..|++++|+..|+++++..|+ .+++++.+|.++.. +|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~ 232 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGD 232 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCC
Confidence 3589999999999999999998 579999997777 589999999999999998887 57888888966666 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLA 227 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~ 227 (270)
+++|+.+|+++++..|+...+..
T Consensus 233 ~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 233 TAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHH
Confidence 99999999999999998875543
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.83 E-value=4.1e-09 Score=78.73 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=69.7
Q ss_pred hCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 167 RGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+|++++|+.+|+++++.+|. +..+++.+|.++++ .|++++|+.++++ ++.++.+....+.+|.+++.+|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999999999999995 56778889999998 9999999999999 88999999999999999999999999987
Q ss_pred cc
Q 024243 245 VG 246 (270)
Q Consensus 245 ~~ 246 (270)
.+
T Consensus 80 ~l 81 (84)
T PF12895_consen 80 AL 81 (84)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 77
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.82 E-value=4.3e-08 Score=93.93 Aligned_cols=116 Identities=15% Similarity=0.059 Sum_probs=96.2
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCC
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLS-NYARFLKEARGDLLKAEEYCARAILMSPNDG--NVLSMYGDLIWQSHKD 204 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~-~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~--~al~~lA~ll~~~~g~ 204 (270)
.+...|++++|...++++++.+|++....+ .+-.......++..++.+.++++++.+|+|+ .++..+|+++++ +|+
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~~ 350 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HGE 350 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-ccc
Confidence 445678999999999999999999985310 1111222224889999999999999999999 999999999998 999
Q ss_pred HHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 205 ASRAESYFD--QAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 205 ~e~A~~~~e--kAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+++|.++|+ ++++.+|++.. +..++.+++..|+.+++...
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 999999999 68889996655 66999999999999999864
No 78
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=4.1e-08 Score=88.22 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=93.7
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
-.++..+.+++|+.+|+..++-||.|..++-..-.++. .+|+--+|++.+..-++..++|.++|..++.+++. .++|+
T Consensus 94 m~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~ 171 (289)
T KOG3060|consen 94 MLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFE 171 (289)
T ss_pred HHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHH
Confidence 34566789999999999999999998877765442444 57888899999999999999999999999988887 89999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDE 240 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~e 240 (270)
+|.-+++..+-++|-++..+..++.+++.+|-.+
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999888887633
No 79
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.81 E-value=5.8e-09 Score=74.57 Aligned_cols=58 Identities=22% Similarity=0.240 Sum_probs=52.5
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHhCC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSP 185 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G-d~~eA~e~~ekAIeldP 185 (270)
..|...+++++|+.+|+++++++|+++.+++++|.++.. .| ++++|+++|++||+++|
T Consensus 11 ~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 11 QIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 345567899999999999999999999999999977764 78 79999999999999998
No 80
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.80 E-value=1.3e-08 Score=72.33 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=59.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD 196 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ 196 (270)
.+|++++|+..|+++++.+|++..++..+|.++.. .|++++|.+.+++++..+|+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 35799999999999999999999999999988885 899999999999999999999988887774
No 81
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.79 E-value=5.9e-08 Score=96.15 Aligned_cols=114 Identities=5% Similarity=-0.043 Sum_probs=95.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcC
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-------GDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHK 203 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~-------Gd~~eA~e~~ekAIel--dP~n~~al~~lA~ll~~~~g 203 (270)
++..+|+.+|++|+++||+++.++..++.++.... .+..+|.+..++++.+ +|.++.++..+|.+... .|
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g 434 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KG 434 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cC
Confidence 45889999999999999999999998885544321 2356777778887775 78888999999955555 89
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++++|..+|++|++++| +..++..+|.++...|+.++|.+..+.
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999 588999999999999999999976555
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=5e-08 Score=90.18 Aligned_cols=112 Identities=14% Similarity=0.101 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
...+...++.....+|....++..+|.++. .+|++++|++.|+++++++|++..++..++.++++ .|++++|+.++++
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~ 173 (355)
T cd05804 96 RDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMES 173 (355)
T ss_pred chhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHh
Confidence 344455555555567777777777775555 47899999999999999999988888888888887 8999999999999
Q ss_pred HHHhCCCCH----HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 215 AVKAAPDDC----YVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 215 AL~~~P~~~----~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+++..|.++ ..+..++.++...|+.+++....+.
T Consensus 174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 988876433 3456788888899998888765444
No 83
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.78 E-value=5.7e-08 Score=70.01 Aligned_cols=64 Identities=23% Similarity=0.253 Sum_probs=45.6
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHA 230 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la 230 (270)
..+++++|+++++++++++|+++..+..+|.+++. +|++++|+..|+++++..|++..+....+
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 46777777777777777777777777777766665 77777777777777777777666655544
No 84
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.77 E-value=4.2e-08 Score=82.87 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL 226 (270)
Q Consensus 150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~ 226 (270)
+....+++.+|..+. ..|++++|+.+|+++++++|+. ..++..+|.++.. .|++++|+.+|+++++.+|++...+
T Consensus 32 ~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 32 AKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHH
Confidence 355777889996665 5799999999999999988764 4689999977776 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCc
Q 024243 227 ASHAHFLWDADED 239 (270)
Q Consensus 227 ~~la~il~~~Ge~ 239 (270)
..++.++...++.
T Consensus 110 ~~lg~~~~~~g~~ 122 (172)
T PRK02603 110 NNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHcCCh
Confidence 9999999998873
No 85
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=5.1e-08 Score=89.25 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=78.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD 237 (270)
Q Consensus 158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~G 237 (270)
+-|+-++. .++|.+|+..|.+||+++|+|+-.|-+.|-++.+ +|+++.|+...+.||.+||....+|.++|.+|..+|
T Consensus 86 ~eGN~~m~-~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 86 NEGNKLMK-NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHH-hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44555564 6999999999999999999999999999977776 999999999999999999999999999999999999
Q ss_pred CcHHHHhc
Q 024243 238 EDEEDEQV 245 (270)
Q Consensus 238 e~eea~~~ 245 (270)
++++|.+.
T Consensus 164 k~~~A~~a 171 (304)
T KOG0553|consen 164 KYEEAIEA 171 (304)
T ss_pred cHHHHHHH
Confidence 99999865
No 86
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.74 E-value=3.4e-07 Score=75.28 Aligned_cols=111 Identities=12% Similarity=0.115 Sum_probs=94.6
Q ss_pred CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 024243 132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~ 205 (270)
.++...+...+++.++.+|+. ..+...+|..++. .|++++|++.|++++...|++ ..+...+|.+++. .|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCH
Confidence 568889999999999999999 5677778877775 799999999999999988765 3578889988887 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
++|+..++. +...+-.+.++..+|.++...|+.++|...
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999977 344455788999999999999999999854
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=1.1e-07 Score=87.87 Aligned_cols=116 Identities=17% Similarity=0.054 Sum_probs=93.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~---~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
..+++++|..+++++++.+|++..++.. +..+.. ..+....+.+.+......+|....++..++.++.. +|++++
T Consensus 55 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~-~G~~~~ 132 (355)
T cd05804 55 IAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE-AGQYDR 132 (355)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH-cCCHHH
Confidence 3568999999999999999999977764 322221 12445555555555446777788888888877776 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|+..++++++++|+++.++..++.+++..|+.+++....+.
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999987665
No 88
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=7.9e-08 Score=92.43 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=102.7
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
..+|++++|...|+++|..|..+..+++++| ..++.+|++++|+++|-+.-.+--++.++++.+|.++-. +.+..+|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHHHH
Confidence 4578999999999999999999999999999 666678999999999999888888999999999977766 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
++|-++..+-|+++.++..++.+|-+.|+...+-++
T Consensus 579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 999999999999999999999999888887666543
No 89
>PRK15331 chaperone protein SicA; Provisional
Probab=98.72 E-value=1.3e-07 Score=80.21 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=86.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
+|++++|..+|+-+...||.|+.+|..||.++. .+++|++|+..|..|..++++|+...+..|.+++. +|+.+.|+.+
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~~~~~A~~~ 127 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MRKAAKARQC 127 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hCCHHHHHHH
Confidence 479999999999999999999999999995554 68999999999999999999999999999977777 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~ 234 (270)
|+.+++ .|.+..+.......+-
T Consensus 128 f~~a~~-~~~~~~l~~~A~~~L~ 149 (165)
T PRK15331 128 FELVNE-RTEDESLRAKALVYLE 149 (165)
T ss_pred HHHHHh-CcchHHHHHHHHHHHH
Confidence 999999 5766655554444443
No 90
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.70 E-value=7.3e-08 Score=69.43 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=61.4
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.|..++++++|+.+++++++++|+++.++..+|.++. ..|++.+|++.|+++++.+|++..+....+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4667889999999999999999999999999997777 489999999999999999999998887665
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.68 E-value=1.6e-07 Score=94.59 Aligned_cols=113 Identities=12% Similarity=0.177 Sum_probs=103.5
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
..++-++|..++.++-.++|..+..++..|..+. ++|++.+|.+.|..|+.+||+++..+..+|.++.+ .|+..-|..
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~ 739 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEK 739 (799)
T ss_pred hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHH
Confidence 3457789999999999999999999999995554 68999999999999999999999999999988888 898888887
Q ss_pred --HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 211 --YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 211 --~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.+..|++++|.++.+|+.+|.++...|+.+.|.+.
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 99999999999999999999999999999888864
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.68 E-value=2e-07 Score=96.88 Aligned_cols=118 Identities=19% Similarity=0.092 Sum_probs=100.7
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+..|+++++.+|+++.++..++..+. ..++.++|++.+++++..+|.+... ..++.++.. +++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchHH
Confidence 45667799999999999999999999999998875555 5799999999999999999987666 556655544 77787
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
+|+..|+++++.+|++..++..+..++.+.|-...+.+..+
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 79999999999999999999999999999998888775533
No 93
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.68 E-value=2.7e-07 Score=79.22 Aligned_cols=98 Identities=18% Similarity=0.162 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--h-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----
Q 024243 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEA--R-------GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---- 201 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~--~-------Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~---- 201 (270)
|+.|.+.++..+..||.+++.+++.|-+|.+. . .-+++|+.-|+.||.++|+..++++++|+.+...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999887752 1 2357788999999999999999999999876541
Q ss_pred ------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 202 ------HKDASRAESYFDQAVKAAPDDCYVLASHAHF 232 (270)
Q Consensus 202 ------~g~~e~A~~~~ekAL~~~P~~~~~~~~la~i 232 (270)
...|++|..+|++|++.+|++....-.+...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1347899999999999999998877777655
No 94
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.67 E-value=5.9e-07 Score=86.10 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=102.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-~al~~lA~ll~~~~g~~e~A~~ 210 (270)
.|+++.|.+.+.++.+..|+....+...|.+.. .+|++++|.++++++.+..|++. .+...++.++.. .|++++|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~-~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ-QRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHHH
Confidence 589999999999999999988888777776666 47999999999999999999886 566667877777 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.+++.++..|+++.++..++.++...|+++++....+.
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999988865443
No 95
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.65 E-value=1.4e-07 Score=91.06 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=63.6
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243 148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV---LSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (270)
Q Consensus 148 ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a---l~~lA~ll~~~~g~~e~A~~~~ekAL~~~ 219 (270)
.+|+++.+++++|..++. .|+|++|+..|++||+++|++.++ |+++|.++.. +|++++|+.+|++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence 689999999999977774 899999999999999999999965 9999955555 999999999999999983
No 96
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=3.3e-07 Score=82.51 Aligned_cols=114 Identities=16% Similarity=0.086 Sum_probs=103.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
+..+-|..++.+.....|+...+....| .+++..|++++|+++|+..|+-||.|..++-..- .+...+|+.-+|+..+
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lka-m~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl-Ailka~GK~l~aIk~l 143 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKA-MLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL-AILKAQGKNLEAIKEL 143 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHH-HHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH-HHHHHcCCcHHHHHHH
Confidence 5778899999999999999999999999 6666789999999999999999999988887665 4455599999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
...++.+++|.++|..++.+|...|+++.|.-+.|+
T Consensus 144 n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 144 NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999999999999999999999999988877
No 97
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1e-07 Score=93.29 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=92.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHHcCC
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP----N---DGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP----~---n~~al~~lA~ll~~~~g~ 204 (270)
.+++.-|..+|.+|+.+.|.+|.++..+|.+.+ ..+.|.+|..+|+++++.-+ . =...+.++|.++-. ++.
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay-~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~ 470 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY-TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNK 470 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheee-hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-Hhh
Confidence 468889999999999999999999999995555 46889999999988883322 1 12347888855544 899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+++|+.+|+++|...|.++.++..+|.+|..+|+.+.|.+..-+
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999999999999998875433
No 98
>PRK11906 transcriptional regulator; Provisional
Probab=98.61 E-value=5.8e-07 Score=86.92 Aligned_cols=109 Identities=6% Similarity=0.037 Sum_probs=90.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
.+..+|...-++|+++||+|+.++..+|..+.. .++++.|...|++|+.++|+.+.+|+.+|++++. .|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGL-SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 478999999999999999999999999977764 6889999999999999999999999999988887 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH-HHHcCCcHHHH
Q 024243 213 DQAVKAAPDDCYVLASHAHF-LWDADEDEEDE 243 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~i-l~~~Ge~eea~ 243 (270)
++|++++|....+-...-++ .+...-.+++.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNI 427 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCchhhhH
Confidence 99999999754443333333 33333344443
No 99
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=4.8e-07 Score=79.26 Aligned_cols=111 Identities=19% Similarity=0.202 Sum_probs=92.5
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNP-----LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~-----~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
..+|+|.+|..-|+.||+.-|..+ ..+.+.|.++. .++.++.|++.|.+||+++|.+..++...|.+|-. +.+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhh
Confidence 457899999999999999999874 45557775555 58999999999999999999999999999966665 899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHH
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEED 242 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea 242 (270)
|++|+..|.+.++.+|..-.+....+++--...+..++
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999998887777777665555444443
No 100
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.60 E-value=7.3e-08 Score=98.92 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=105.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.+.+++|++.|.++|+.+|.|..+-+.+|.++.. .|++.+|...|.++.+.--++..+|.++|+++.. +|+|-.|++.
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~-kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e-~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE-KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE-QGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh-ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH-HHHHHHHHHH
Confidence 4688999999999999999999999999988885 7999999999999999888899999999999999 9999999999
Q ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 212 FDQAVKAAP--DDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 212 ~ekAL~~~P--~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|+.+++..- ++..++..+|.++++.|.+.++...+..
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999997653 6799999999999999999998866444
No 101
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.59 E-value=5.3e-07 Score=82.15 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 024243 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD---DCYV 225 (270)
Q Consensus 152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~---~~~~ 225 (270)
+...++..|..+....|+|++|+..|++.|+..|++ +.+++.+|.+++. .|++++|+.+|+++++.+|+ .+++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 456666676555444699999999999999999988 5899999988888 99999999999999999887 4889
Q ss_pred HHHHHHHHHHcCCcHHHHhccCC
Q 024243 226 LASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 226 ~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++.+|.++..+|+.+++....+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999876444
No 102
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.59 E-value=7.7e-07 Score=85.13 Aligned_cols=113 Identities=18% Similarity=0.121 Sum_probs=96.5
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
+.+...|+.++|...++++++. |.++.....++ .+. .++.++|++.+++.++.+|+|+..+..+|.++.. .++++
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~-~l~--~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~ 345 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLKR-QYDERLVLLIP-RLK--TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQ 345 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHh-hcc--CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHH
Confidence 3445568999999999999995 55666655666 222 4999999999999999999999999999998888 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+|..+|+++++..|++. .+..++.++...|+.+++...
T Consensus 346 ~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 346 EASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred HHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999754 566899999999999999865
No 103
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.59 E-value=1e-06 Score=71.24 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD---DCYVLAS 228 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~---~~~~~~~ 228 (270)
+++.+| ..+...|+.++|+.+|++|++..... ..+++.+|..+.. +|++++|+..+++++...|+ +..+...
T Consensus 3 ~~~~~A-~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELA-WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 445555 22334555555666665555554332 3355555533333 55555665555555555555 4555555
Q ss_pred HHHHHHHcCCcHHHH
Q 024243 229 HAHFLWDADEDEEDE 243 (270)
Q Consensus 229 la~il~~~Ge~eea~ 243 (270)
++.+++..|+.+++-
T Consensus 81 ~Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 81 LALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHHCCCHHHHH
Confidence 555555555555554
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=2.1e-07 Score=93.41 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=102.8
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
.+++|+++...++..++++|-....|+.+| +++...+++..|.++|.+++.++|++.++|.+++..+.+ +++-.+|..
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G-~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~~ 574 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLG-CAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAFR 574 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhcc-HHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHHH
Confidence 368999999999999999999999999999 444468999999999999999999999999999977776 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
.+..|++.+-.+..+|.|+-.+..+.|+.+++..
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 9999999999999999999999999999998874
No 105
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.55 E-value=1.1e-06 Score=84.03 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=85.8
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNY-ARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~l-A~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
.+.|+++.|..+|+++.+.+|++..+...+ + .++...|++++|.+.++++++.+|+++.++..++.++.. .|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a-~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRV-RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-TGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhHHHH
Confidence 456788888888888888888886554333 4 333457888888888888888888888888888877666 7888888
Q ss_pred HHHHHHHHH------------------------------------------hCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 209 ESYFDQAVK------------------------------------------AAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 209 ~~~~ekAL~------------------------------------------~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+..+.+..+ ..|+++.+...++..+...|+.+++...+
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 755554442 23446667777788888888888888766
Q ss_pred CC
Q 024243 247 EE 248 (270)
Q Consensus 247 e~ 248 (270)
++
T Consensus 287 ~~ 288 (398)
T PRK10747 287 LD 288 (398)
T ss_pred HH
Confidence 55
No 106
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.54 E-value=3.5e-07 Score=90.20 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=95.7
Q ss_pred cccccccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC-----CCH---
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP-----NDG--- 188 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP-----~n~--- 188 (270)
-+.+|-..+++.+|+..|++|+.+ +|.-+.++.+||..++ ..|++++|..+|++|+++-- +.+
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 346677789999999999999986 4556788899995555 68999999999999998862 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAA--------PDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~--------P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
..+.+++ +.+..++++++|+.++++++++. +.-+.++.++|.+|+.+|+++++++.
T Consensus 326 ~~l~~~~-~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~ 389 (508)
T KOG1840|consen 326 AQLSELA-AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEEL 389 (508)
T ss_pred HHHHHHH-HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3455555 34455999999999999999873 23477899999999999999999864
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=4.9e-07 Score=88.11 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=94.4
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
.+.|+|+.|+.+|.++|.++|.|...+.+...++. .+|+|++|.+--.+.++++|.=+..|..+|..++- +|+|++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHHH
Confidence 34679999999999999999999988888886666 58999999999999999999999999999966666 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il 233 (270)
..|.+.|+.+|++...+..++.++
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999988
No 108
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.53 E-value=2.7e-07 Score=86.33 Aligned_cols=106 Identities=18% Similarity=0.094 Sum_probs=93.7
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
|+-|..+|.|++|+.+|.+++..+|.|+..+.+.|.+++ .+..|..|+.-|+.||.+|-.+..+|...+..-.. +|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhH
Confidence 456788899999999999999999999999999996666 58999999999999999999999999999977777 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
.+|...++.+|++.|++-...-.++.+-
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 9999999999999999766555555443
No 109
>PRK15331 chaperone protein SicA; Provisional
Probab=98.53 E-value=4.7e-07 Score=76.80 Aligned_cols=96 Identities=13% Similarity=-0.007 Sum_probs=86.5
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243 148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLA 227 (270)
Q Consensus 148 ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~ 227 (270)
+.++.-..++.+|..++. .|++++|+.+|+-....||.|++.|..||- +++.+++|++|+..|..|..++++|+...+
T Consensus 32 is~~~le~iY~~Ay~~y~-~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa-~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYN-QGRLDEAETFFRFLCIYDFYNPDYTMGLAA-VCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 455566778888977785 799999999999999999999999999995 444599999999999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHhc
Q 024243 228 SHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 228 ~la~il~~~Ge~eea~~~ 245 (270)
..|.++..+|+.+.|...
T Consensus 110 ~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQC 127 (165)
T ss_pred hHHHHHHHhCCHHHHHHH
Confidence 999999999999999865
No 110
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=1.1e-06 Score=81.61 Aligned_cols=118 Identities=10% Similarity=0.058 Sum_probs=103.4
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN-----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n-----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~ 201 (270)
..|+...++++|+..-++..++.+.. +.+++.||..... ..++++|.+.+.+|++.||++..+-+.+|.+...
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~- 226 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-SSDVDRARELLKKALQADKKCVRASIILGRVELA- 226 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-
Confidence 35677789999999999999998876 4667777755553 6899999999999999999999999999998888
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 202 HKDASRAESYFDQAVKAAPDD-CYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P~~-~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
.|+|++|++.++.+++.||+. +.+...+..+|..+|+.++....+
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999974 779999999999999999888543
No 111
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=2.1e-07 Score=86.49 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=84.6
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ----- 200 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~----- 200 (270)
.+.|+..+++++|.++|+.+++++|.|.+++..+|.-++. -++.+-|+.+|++.+++.-.+++.+.++|.+++-
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence 3566777888888888888888888777666555533332 4566666666666666665555555555544322
Q ss_pred -------------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 201 -------------------------------SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 201 -------------------------------~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
..|++.-|..+|+-||..+|+|..++.+++.+-.+.|+.+++...+.-
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 156777778888888888888888888888888888888888765433
No 112
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=3.8e-07 Score=87.84 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
+++..|..|-..++.+|..|+.++.+.|+..+ ..|++++|.++|+.|+..|....+++++.+ +.+..+|+.++|+++|
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f-~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAF-ANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCF 547 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceee-ecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHH
Confidence 58899999999999999999999999998887 589999999999999999999999999999 5566699999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
-+.-.+--++..+++.++++|-.+++...+.+.
T Consensus 548 ~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 548 LKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 999999999999999999999999998888754
No 113
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.8e-07 Score=85.06 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=84.1
Q ss_pred cCCChHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNP------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMY 194 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----~al~~l 194 (270)
-+.+.+.|+..|+++|.++|++. ..+-.-|+.++ ..|+|.+|.++|..||.+||++. ..|.+.
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f-k~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF-KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh-hccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 34577888888888888888775 33444565566 36888888888888888888643 456677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
|.+..+ +|+..+|+...+.|++++|.-..++...|.++..+++++++-+
T Consensus 294 a~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 294 ALVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred Hhhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666 8888888888888888888888888888888888888777753
No 114
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.42 E-value=1.2e-06 Score=90.30 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=83.0
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-- 203 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-- 203 (270)
+.|..+|+|++|..+|.++++.+|++ ...++.+|+.+. ..|++..|+.+|++.++.+|++.+++..+|-++.. .+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~-~~~~ 392 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH-SAKK 392 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh-hhhh
Confidence 44566788888888888888888888 777778886555 47888888888888888888888888888854443 32
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243 204 --DASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD 237 (270)
Q Consensus 204 --~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~G 237 (270)
..++|..++.++++..|.+..+|..++.++....
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence 5577888888888888888888888887765443
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=2.1e-06 Score=89.43 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=93.2
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-------------------HH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-------------------NV 190 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-------------------~a 190 (270)
...+++++|+..++.+++.+|+...+++.+|. ++...+++.+|... +++.+.+.+. .+
T Consensus 42 ~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~A 118 (906)
T PRK14720 42 KSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLA 118 (906)
T ss_pred HhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHH
Confidence 34679999999999999999999999999996 55556777666555 5555555555 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
++.+| .+|.++|+.++|...|+++++.+|+|+.++.++|..|... +.++|..
T Consensus 119 l~~LA-~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 119 LRTLA-EAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHH-HHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 99999 5555599999999999999999999999999999999998 8888874
No 116
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.40 E-value=2.3e-06 Score=87.54 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=98.7
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
+..|++.|+..++..+.-.|-.++|.+...|..++.... .+|++.+|.-+|.+||+.+|.+....+..+.++.+ +|+.
T Consensus 180 ~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~-~G~~ 257 (895)
T KOG2076|consen 180 GEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLYQK-TGDL 257 (895)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hChH
Confidence 456788999999999999999999999999999995554 68999999999999999999999999999955555 9999
Q ss_pred HHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 206 SRAESYFDQAVKAAPDD-----CYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~-----~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.+|...|.+++...|.. ....+..+..+...++.+.+.+.++.
T Consensus 258 ~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 258 KRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999932 22233345566666666555554443
No 117
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.40 E-value=1.1e-06 Score=88.57 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=85.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEE--YCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e--~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
..++..+...+|...|..++.+||+++.....+|.++.+ .|+-.-|+. ++..|+++||.|.++|+.+|.++-. +|+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd 769 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGD 769 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccc
Confidence 445667899999999999999999999999999977775 798888888 9999999999999999999966665 999
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 024243 205 ASRAESYFDQAVKAAPDDC 223 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~ 223 (270)
.++|.++|+-|+++.+.+|
T Consensus 770 ~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 770 SKQAAECFQAALQLEESNP 788 (799)
T ss_pred hHHHHHHHHHHHhhccCCC
Confidence 9999999999999988765
No 118
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.1e-06 Score=86.13 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=104.0
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
+|--.+++++|..+|.|+..+||....+|..+|..+. ..+..++|+.+|.+|-++-|........+|.-+.+ .++++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hccHHH
Confidence 4455589999999999999999999999999997776 47999999999999999999988888888844444 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
|..+|.+|+.+.|+|+.++..+|.+.+..+++.+|...
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHH
Confidence 99999999999999999999999999999999999853
No 119
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.37 E-value=3.5e-06 Score=83.65 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQA--DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 134 d~~eA~~~y~kALel--dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
+.+++....++++.+ +|.++.++..+|.... ..|++++|..++++|++++| +..+|..+|.++.. .|++++|++.
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~ 475 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADA 475 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 345666667776664 8888888888884444 57999999999999999999 58899999988877 9999999999
Q ss_pred HHHHHHhCCCCHH
Q 024243 212 FDQAVKAAPDDCY 224 (270)
Q Consensus 212 ~ekAL~~~P~~~~ 224 (270)
|++|+.++|.++.
T Consensus 476 ~~~A~~L~P~~pt 488 (517)
T PRK10153 476 YSTAFNLRPGENT 488 (517)
T ss_pred HHHHHhcCCCCch
Confidence 9999999998775
No 120
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.34 E-value=7.3e-07 Score=65.18 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-------PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (270)
Q Consensus 150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-------P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~ 219 (270)
|+-..++.++|.++. .+|++++|+.+|++|+++. |.-..++.++|.++.. +|++++|+.++++++++.
T Consensus 2 ~~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 445678899997777 5899999999999999773 2235678899977776 999999999999999863
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=5.3e-06 Score=80.32 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS 228 (270)
Q Consensus 149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~ 228 (270)
+|.-..+++..|...++ .|++++|+..++..|...|+|+..+...+.+++. .++.++|.+.+++++..+|+.+....+
T Consensus 302 ~~~~~aa~YG~A~~~~~-~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~~~l~~~ 379 (484)
T COG4783 302 KRGGLAAQYGRALQTYL-AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNSPLLQLN 379 (484)
T ss_pred CccchHHHHHHHHHHHH-hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCccHHHHH
Confidence 46777888888877775 6999999999999999999999999999998888 999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHhccCCCCCCCCCCC
Q 024243 229 HAHFLWDADEDEEDEQVGEEPAPPSYNFQ 257 (270)
Q Consensus 229 la~il~~~Ge~eea~~~~e~~~~~~p~f~ 257 (270)
+|..|.+.|+..++...+......+|++.
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 99999999999999988766555555543
No 122
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=1.2e-06 Score=81.71 Aligned_cols=114 Identities=10% Similarity=0.012 Sum_probs=97.5
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|+..++...|+..|.+.++..|.+...+...|++.- ..+++++|.++|+.+++++|.|.++....|.-++- -++.+-
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e-am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~ 342 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE-AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEM 342 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH-HHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHH
Confidence 3445577788888888888888999998888995555 57999999999999999999999999888877777 899999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
|+.+|++.|.+.-.+++.+.++|.+.+..+++|-.-
T Consensus 343 AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 999999999999999999999999888888877654
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=3.2e-06 Score=69.46 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=71.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
..|++++|+..|++++...|+. +.+...+|.++. ..|++++|+..++. +.-.+-.+.++..+|+++.. +|++++
T Consensus 60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~~~ 136 (145)
T PF09976_consen 60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDYDE 136 (145)
T ss_pred HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCHHH
Confidence 4589999999999999998776 467788997777 48999999999966 45556677889999988888 999999
Q ss_pred HHHHHHHHH
Q 024243 208 AESYFDQAV 216 (270)
Q Consensus 208 A~~~~ekAL 216 (270)
|+..|++||
T Consensus 137 A~~~y~~Al 145 (145)
T PF09976_consen 137 ARAAYQKAL 145 (145)
T ss_pred HHHHHHHhC
Confidence 999999985
No 124
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.30 E-value=2.8e-06 Score=83.85 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=97.4
Q ss_pred cccccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CCCHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNV 190 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~n~~a 190 (270)
.-|..+|++++|+..+++++++ .|.-...+..+|.++. .++++.+|+.+|++|+.+- |.-+.+
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3456679999999999999999 7777788878995554 6899999999999999875 445678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKAA--------PDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~--------P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+.+||.+++. .|+|++|..++++|+++. |+-...+.+++.++..+++++++...
T Consensus 286 l~nLa~ly~~-~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 286 LNNLAVLYYK-QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred HHHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 9999977776 999999999999999873 33456777888899999999999854
No 125
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.6e-06 Score=81.18 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=84.6
Q ss_pred cCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
.+|++..|.+.|.++|.++|+| +..+.+.|.+.. .+|+..+|+.-|+.|+.+||....++...|.++.. .++++
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~-le~~e 338 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLA-LEKWE 338 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH-HHHHH
Confidence 4689999999999999999997 456677775665 58999999999999999999999999999988777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHF 232 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~i 232 (270)
.|+++|++|++..-+ +.....+..+
T Consensus 339 ~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred HHHHHHHHHHhhccc-cchHHHHHHH
Confidence 999999999998775 4444444443
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=1.4e-06 Score=87.48 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=92.0
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------HHHhhCCHHHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARF----------------------------LKEARGDLLKAEEYCAR 179 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~----------------------------l~~~~Gd~~eA~e~~ek 179 (270)
+|...|+..+|..+.++-++ .|.++..|..+|.+ ++ ..++|++|.+++++
T Consensus 433 CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~-~~~~fs~~~~hle~ 510 (777)
T KOG1128|consen 433 CYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLIL-SNKDFSEADKHLER 510 (777)
T ss_pred HHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccc-cchhHHHHHHHHHH
Confidence 34444555566666666666 44444444444433 33 35899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 180 AILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 180 AIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+++++|-....|+.++.+.++ .++++.|..+|.+++..+|++...|.+++..|...++..++--.
T Consensus 511 sl~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 511 SLEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred HhhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 999999999999999977787 99999999999999999999999999999999999998888743
No 127
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=6.3e-06 Score=78.78 Aligned_cols=100 Identities=15% Similarity=0.233 Sum_probs=87.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD 213 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~e 213 (270)
--++|.++|+++|+++|+...+...+| -++.+.|.+..++.++++++...| |...+..+|+++.. .+.+++|+.+|.
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~A-EL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A-~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIA-ELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRA-QNEPQKAMEYYY 495 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHH-HHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHH-hhhHHHHHHHHH
Confidence 348999999999999999999999999 555578999999999999999888 56778899987776 899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHc
Q 024243 214 QAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 214 kAL~~~P~~~~~~~~la~il~~~ 236 (270)
+||.++|++...+..+-..-...
T Consensus 496 ~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHhcCccchHHHHHHHHHHhcc
Confidence 99999999998888777654433
No 128
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.26 E-value=2.9e-05 Score=62.76 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=75.3
Q ss_pred cccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHc
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSH 202 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~ 202 (270)
|...|+.++|+.+|+++++..... ..++..+|..+. ..|++++|+..+++++...|+ +..+...++.+++. .
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~ 88 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-L 88 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-C
Confidence 345689999999999999986555 568888996666 589999999999999999898 88888888966666 9
Q ss_pred CCHHHHHHHHHHHHHh
Q 024243 203 KDASRAESYFDQAVKA 218 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~ 218 (270)
|+.++|+..+-.++.-
T Consensus 89 gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 89 GRPKEALEWLLEALAE 104 (120)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998863
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.25 E-value=5.1e-06 Score=82.69 Aligned_cols=113 Identities=12% Similarity=0.009 Sum_probs=98.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
|+-++|..+.+.+++.|+.....|.-+| .+++...+|++|+++|+.|+.++|+|-.+|..++.+-.+ +++++-....-
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~g-l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLG-LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHH-HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHHHHH
Confidence 5778999999999999999999999999 666667899999999999999999999999999955555 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
.+.++..|.+-..|..++..+...|++..+...++
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888876543
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.24 E-value=2.2e-06 Score=80.25 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS 228 (270)
Q Consensus 149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~ 228 (270)
+|.+..-+..+|..++ ..|++..|+..|..||+.||++..+++..|.+++. +|+-.-|+..+.++|++.|+..-+...
T Consensus 34 ~~advekhlElGk~ll-a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA-mGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELL-ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA-MGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hcCCccchhhHHHHHhcCccHHHHHHH
Confidence 3445555556665555 35666666666666666666666666666655555 666666666666666666666666666
Q ss_pred HHHHHHHcCCcHHHHh
Q 024243 229 HAHFLWDADEDEEDEQ 244 (270)
Q Consensus 229 la~il~~~Ge~eea~~ 244 (270)
.|.++.++|+.++|+.
T Consensus 112 Rg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEA 127 (504)
T ss_pred hchhhhhcccHHHHHH
Confidence 6666666666666653
No 131
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.23 E-value=4.8e-06 Score=82.90 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=101.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
++|.+.++..+..|+..|.+.+.+...|-.+. ..|+-++|.++++.++..|+...-.|..+| ++++..++|++|+.+|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~g-l~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLG-LLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHH-HHHhhhhhHHHHHHHH
Confidence 58999999999999999999999999997776 479999999999999999999999999999 7777799999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
..|+.+.|+|..++..++.+..++++++-..+
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999998766553
No 132
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.22 E-value=2.1e-06 Score=83.01 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=63.2
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCcHHHHhccCC-CCCCCCCC
Q 024243 183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYV---LASHAHFLWDADEDEEDEQVGEE-PAPPSYNF 256 (270)
Q Consensus 183 ldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~---~~~la~il~~~Ge~eea~~~~e~-~~~~~p~f 256 (270)
.+|+++++++++|..++. +|+|++|+..|++||+++|++..+ ++++|.+|..+|+.++|..+++. +...++.|
T Consensus 70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 589999999999988887 999999999999999999999854 99999999999999999977655 43334444
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=1.1e-05 Score=84.34 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=84.6
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------------------CC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------------------PN 186 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------------------P~ 186 (270)
.+|.+.|+.++|...|+++|++||+|+.++++||..+.+ . ++++|++++.+|++.. |.
T Consensus 124 ~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 124 EAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcc
Confidence 466677999999999999999999999999999966665 4 9999999999888764 44
Q ss_pred CHHHHHHHHH-------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 187 DGNVLSMYGD-------------------LIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 187 n~~al~~lA~-------------------ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
+.+.+..+-. -+|...+++++++.+++.+|+.+|+|..+...++.+|..
T Consensus 202 d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 202 DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 4433211111 134447789999999999999999999999999988863
No 134
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.19 E-value=2.8e-05 Score=64.54 Aligned_cols=93 Identities=19% Similarity=0.183 Sum_probs=75.2
Q ss_pred CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCC-
Q 024243 132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQSHKD- 204 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---al~~lA~ll~~~~g~- 204 (270)
.|+|++|++.|+.+....|.. ..+...++.+++. .+++++|+..+++.|+++|+++. +++..|...+. +..
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~-~~~~ 100 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE-QDEG 100 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH-Hhhh
Confidence 579999999999999998876 4677788877774 79999999999999999997664 67777755555 444
Q ss_pred --------------HHHHHHHHHHHHHhCCCCHHHH
Q 024243 205 --------------ASRAESYFDQAVKAAPDDCYVL 226 (270)
Q Consensus 205 --------------~e~A~~~~ekAL~~~P~~~~~~ 226 (270)
..+|...|++.|+..|++..+-
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 6789999999999999887653
No 135
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.5e-06 Score=73.70 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=81.2
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
.-|...+.|..|+..|.++|.++|..+.++.+.|.+++. ..+++.+.+-|++|++++||...+++.++....+ ...|.
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hcccc
Confidence 344556799999999999999999999999999977765 7999999999999999999999999999977777 89999
Q ss_pred HHHHHHHHHHHh
Q 024243 207 RAESYFDQAVKA 218 (270)
Q Consensus 207 ~A~~~~ekAL~~ 218 (270)
.|+..+++|..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999999654
No 136
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=9.8e-06 Score=77.04 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=76.1
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
..++|.+|+....++|+++|+|..+++..|.++.. .++|+.|...|++|++++|+|..+...+..+.-+.....++...
T Consensus 269 Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 269 KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999988885 79999999999999999999999999999555553344445678
Q ss_pred HHHHHHHhCC
Q 024243 211 YFDQAVKAAP 220 (270)
Q Consensus 211 ~~ekAL~~~P 220 (270)
.|.+++..-+
T Consensus 348 ~y~~mF~k~~ 357 (397)
T KOG0543|consen 348 MYANMFAKLA 357 (397)
T ss_pred HHHHHhhccc
Confidence 8888876654
No 137
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.17 E-value=7.2e-06 Score=76.90 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=84.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.+++..|+..|..|++.||++..+++..|.++. ..|+-.-|+.-+.+.|++.|+...+....|.+++. +|++++|+..
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~~D 128 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAEAD 128 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHHHH
Confidence 478999999999999999999999999996666 58999999999999999999999999999988887 9999999999
Q ss_pred HHHHHHhCCCCHH
Q 024243 212 FDQAVKAAPDDCY 224 (270)
Q Consensus 212 ~ekAL~~~P~~~~ 224 (270)
|.++|+.+|++..
T Consensus 129 F~~vl~~~~s~~~ 141 (504)
T KOG0624|consen 129 FDQVLQHEPSNGL 141 (504)
T ss_pred HHHHHhcCCCcch
Confidence 9999999996543
No 138
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.15 E-value=4e-06 Score=77.40 Aligned_cols=125 Identities=15% Similarity=-0.000 Sum_probs=95.4
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
.|-..++++.|.+.++++-+.+.+.......-|.+.. ..| ++.+|.-+|+...+..+.++..+..+|.+... +|++
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~ 217 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHY 217 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-H
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCH
Confidence 3445689999999999999998887766666664444 345 69999999999888888999999999966666 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-HHHHhccCCCCCCCC
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADED-EEDEQVGEEPAPPSY 254 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~-eea~~~~e~~~~~~p 254 (270)
++|...+++|++.+|+++.++.+++.+...+|+. +..+..+..+....|
T Consensus 218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 218 EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999997 444444444443333
No 139
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.4e-05 Score=76.38 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=86.3
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC----------------------------------CHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG----------------------------------DLLK 172 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G----------------------------------d~~e 172 (270)
.+|.-+|++++|+..|+++..+||.+....-.||..+. ..| ++..
T Consensus 240 k~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 240 KCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG-QEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred hhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH-hccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence 45556789999999999999999998877777773322 234 4456
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 173 AEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 173 A~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
|+.+-+|+|+.||++.+++...|.++.. +++.++|+-.|+.|..+.|-+-..|..+-..|...+...||.
T Consensus 319 AL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 319 ALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred HHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 7777777777777777777777766665 777777777777777777777777777777777777777775
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.13 E-value=5.4e-05 Score=68.09 Aligned_cols=113 Identities=19% Similarity=0.113 Sum_probs=86.9
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC-
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLL---SNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHK- 203 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al---~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~~lA~ll~~~~g- 203 (270)
.+|++++|+..|++++...|+.+.+. +.+|.+++. .+++++|+..|++.|+.+|+++ .+++.+|.+.+. .+
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~-~~~ 121 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA-LDD 121 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh-cch
Confidence 35899999999999999999997665 788877774 8999999999999999999765 467777744322 21
Q ss_pred --------------C---HHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcHHHHhc
Q 024243 204 --------------D---ASRAESYFDQAVKAAPDDCYVL-----------------ASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 204 --------------~---~e~A~~~~ekAL~~~P~~~~~~-----------------~~la~il~~~Ge~eea~~~ 245 (270)
| ..+|+..|++.++..|+...+- +..+.+|++.|.+..+...
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r 197 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNR 197 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 1 3478899999999999874432 2336677888887766644
No 141
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.11 E-value=7.4e-06 Score=54.06 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.++..+|..+. ..|++++|++.|+++|+.+|+|+.+|..+|
T Consensus 2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 45667775555 367777777777777777777777777766
No 142
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.11 E-value=3.8e-06 Score=81.27 Aligned_cols=105 Identities=17% Similarity=0.083 Sum_probs=93.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.++|+.|+..|.+||+++|+++.++.+.+.++. +.++|..|+.-+.+||+++|....+|+..|..+.. .+++.+|...
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHHH
Confidence 368999999999999999999999999984444 67999999999999999999999999999966666 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
|++...+.|+++.+...+..+-...-+
T Consensus 95 l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 95 LEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999998888776655444
No 143
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=1.3e-05 Score=71.09 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=88.7
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
.+|-+.|-++-|..-|.+++.+.|+-+.+++.+|..+.+ .|+|+.|.+.|.-.+++||.+.-+..+.|..++- -|++.
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~ 150 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYK 150 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchH
Confidence 466677788999999999999999999999999966664 7999999999999999999999999999966666 89999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Q 024243 207 RAESYFDQAVKAAPDDCYVLASH 229 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~l 229 (270)
-|.+.+.+-.+.+|+||.--..+
T Consensus 151 LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred hhHHHHHHHHhcCCCChHHHHHH
Confidence 99999999999999998644433
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.10 E-value=4.1e-05 Score=66.68 Aligned_cols=112 Identities=20% Similarity=0.235 Sum_probs=82.7
Q ss_pred cCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc--
Q 024243 131 NNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSH-- 202 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~~lA~ll~~~~-- 202 (270)
+.|++.+|+..|++++...|+. +.+.+.+|.+++. .|++++|+..|++.|+..|+++ .+++.+|.+.+...
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence 4689999999999999999886 5788889977774 7999999999999999999765 57888886655422
Q ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcHHHH
Q 024243 203 --------KDASRAESYFDQAVKAAPDDCYVL-----------------ASHAHFLWDADEDEEDE 243 (270)
Q Consensus 203 --------g~~e~A~~~~ekAL~~~P~~~~~~-----------------~~la~il~~~Ge~eea~ 243 (270)
....+|+..|+..++..|+...+- +..|.+|++.|.+..|.
T Consensus 96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 234589999999999999875543 23366677777766665
No 145
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.09 E-value=3.2e-05 Score=77.45 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=99.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
+++.++|+.+++++|+..|+...+|..+|+++. ..++.+.|.+.|..-++.-|+.+..|..++.+--. .|+..+|..+
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-DGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-hcchhhHHHH
Confidence 478899999999999999999999999995555 57999999999999999999999999999976665 8899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
++++.-.+|++...|......-.+.|+.+.++.
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999888874
No 146
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.09 E-value=3.6e-06 Score=52.95 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=14.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 177 CARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 177 ~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
|++||+++|+|+.+|.+||.++.. .|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhh
Confidence 444555555555555555543333 4444444
No 147
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=8.7e-05 Score=67.46 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=65.8
Q ss_pred CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCH
Q 024243 132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~g~~ 205 (270)
.|+|..|...|++.++..|+. +.+++-||..++. +|+|+.|...|.++++-.|+ -+++++.+|.++.. +++.
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~~~ 231 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LGNT 231 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hcCH
Confidence 466777777777777777765 4566667766663 67777777777777777764 44667777755555 7777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 024243 206 SRAESYFDQAVKAAPDDCYVLA 227 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~ 227 (270)
++|-..|+++++..|+...+..
T Consensus 232 d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 232 DEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHHCCCCHHHHH
Confidence 7777777777777776655443
No 148
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.07 E-value=6.8e-06 Score=85.05 Aligned_cols=118 Identities=16% Similarity=0.061 Sum_probs=81.7
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------------------------HHhhCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFL-----------------------------------KEARGDLL 171 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l-----------------------------------~~~~Gd~~ 171 (270)
.+|....|...|..+|++|.++|+.+..++...+..+ +...+++.
T Consensus 500 ~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h 579 (1238)
T KOG1127|consen 500 QIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLH 579 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchh
Confidence 4555555777788888888888877776655444321 11234556
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 172 KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 172 eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+|+..|+.|++.+|+|.+.|..++..|.. .|.+..|+..|.||..++|.+....+..+.+....|++.++-+.
T Consensus 580 ~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 580 GAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 67777777777777777777777766666 77777777777777777777777777777777777777776544
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=2.9e-05 Score=74.63 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=76.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.++..+|+..+.++++.+|.+...+...|.++.. +++++.|+++.++|+++.|++...|+.||.+|.. +|+++.|+..
T Consensus 213 ~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALla 290 (395)
T PF09295_consen 213 MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFENALLA 290 (395)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 4678899999999999999999999999988885 7999999999999999999999999999988887 9999999987
Q ss_pred HHHHH
Q 024243 212 FDQAV 216 (270)
Q Consensus 212 ~ekAL 216 (270)
+..+-
T Consensus 291 LNs~P 295 (395)
T PF09295_consen 291 LNSCP 295 (395)
T ss_pred HhcCc
Confidence 77443
No 150
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.02 E-value=1.5e-05 Score=73.67 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA-SRAESYF 212 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~-e~A~~~~ 212 (270)
.+.+|..+|++..+..+.++..++.+|.+.. .+|+|++|++.+++|++.+|++++++.+++.+... .|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHHHH
Confidence 6889999999988888899999999996665 58999999999999999999999999999955555 7877 6788899
Q ss_pred HHHHHhCCCCHHHHHH
Q 024243 213 DQAVKAAPDDCYVLAS 228 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~ 228 (270)
.+....+|+|+.+...
T Consensus 260 ~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 260 SQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHCHHHTTTSHHHHHH
T ss_pred HHHHHhCCCChHHHHH
Confidence 9999999999876543
No 151
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.99 E-value=1.7e-05 Score=52.32 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
++++..+|.++.. +|++++|+.+|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999988887 999999999999999999999999999875
No 152
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.98 E-value=2.9e-05 Score=80.52 Aligned_cols=93 Identities=22% Similarity=0.155 Sum_probs=81.6
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ--SHKDASRA 208 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~--~~g~~e~A 208 (270)
.+++|++|++..+++++.||+|..++.-+|.++....++.++|.+.|..|.+++|++.-+|-.+++++-. ..-+++++
T Consensus 14 ~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~ 93 (1238)
T KOG1127|consen 14 RNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRA 93 (1238)
T ss_pred hhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHh
Confidence 3689999999999999999999999999998888643459999999999999999999999999966544 35678899
Q ss_pred HHHHHHHHHhCCCCH
Q 024243 209 ESYFDQAVKAAPDDC 223 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~ 223 (270)
-.+|++++.+.++..
T Consensus 94 ~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 94 AKCYQRAVLILENQS 108 (1238)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999999888654
No 153
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.96 E-value=8.4e-06 Score=51.23 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q 024243 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEE 175 (270)
Q Consensus 141 ~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e 175 (270)
+|+++|+++|+|+.+|++||.++. ..|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhcC
Confidence 489999999999999999997777 4899999974
No 154
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.95 E-value=9.5e-05 Score=73.45 Aligned_cols=91 Identities=25% Similarity=0.261 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
++++.+|..+ ...|++++|++++++||+..|..++.++..|.++-. .|++.+|..+++.|-.+|+.|-.+-...+..+
T Consensus 195 w~~~~lAqhy-d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 195 WTLYFLAQHY-DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 4556778444 458999999999999999999999999999988877 99999999999999999999999999999999
Q ss_pred HHcCCcHHHHhcc
Q 024243 234 WDADEDEEDEQVG 246 (270)
Q Consensus 234 ~~~Ge~eea~~~~ 246 (270)
.+.|+.++|++..
T Consensus 273 LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 273 LRAGRIEEAEKTA 285 (517)
T ss_pred HHCCCHHHHHHHH
Confidence 9999999998654
No 155
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.00012 Score=68.22 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=86.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-~al~~lA~ll~~~~g~~e~A~~ 210 (270)
..+.+.|+..+.+|++.||++..+-..+|++... .|+|++|++.++++++-||... +++..+..+| ...|+.++.+.
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y-~~lg~~~~~~~ 270 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECY-AQLGKPAEGLN 270 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHhCCHHHHHH
Confidence 3689999999999999999999999999988875 8999999999999999999765 5777777444 45999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
.+.++++.++.....+...-.+....|.
T Consensus 271 fL~~~~~~~~g~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 271 FLRRAMETNTGADAELMLADLIELQEGI 298 (389)
T ss_pred HHHHHHHccCCccHHHHHHHHHHHhhCh
Confidence 9999999999655444444444444444
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.92 E-value=0.00017 Score=64.96 Aligned_cols=84 Identities=15% Similarity=0.035 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 024243 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL---SMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYV 225 (270)
Q Consensus 152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al---~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~ 225 (270)
.+..++..|...+. .|+|++|++.|++++...|..+.+. +.+|.++++ .+++++|+.+|++.++.+|++ +.+
T Consensus 31 ~~~~~Y~~A~~~~~-~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQ-DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 45556677755664 7999999999999999999887665 788988888 999999999999999999976 567
Q ss_pred HHHHHHHHHHcC
Q 024243 226 LASHAHFLWDAD 237 (270)
Q Consensus 226 ~~~la~il~~~G 237 (270)
++.+|.++...+
T Consensus 109 ~Y~~g~~~~~~~ 120 (243)
T PRK10866 109 LYMRGLTNMALD 120 (243)
T ss_pred HHHHHHhhhhcc
Confidence 788887765543
No 157
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.90 E-value=0.00014 Score=72.92 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
+++.++|+.+++.+|+..|+....|..+|.++-.+++.+.+.
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH
Confidence 455555555555566666655555555666655555555554
No 158
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.87 E-value=0.00029 Score=61.40 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHH
Q 024243 133 HGNNSTDLYYQKMIQ-ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 133 gd~~eA~~~y~kALe-ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
|++.+|...|++++. +.-+++..+..+++..+. .+++..|...+++..+.+|. .++.+..+|..+.. .|++++|+
T Consensus 103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Ae 180 (251)
T COG4700 103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAE 180 (251)
T ss_pred hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHH
Confidence 455555555555543 344455555555555553 45555555555555555552 33444444544444 55555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHH
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEED 242 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea 242 (270)
..|+.++...| .+.....++..+..+|+.+++
T Consensus 181 safe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 181 SAFEVAISYYP-GPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHH
Confidence 55555555555 344555555555555544443
No 159
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.86 E-value=0.00014 Score=69.08 Aligned_cols=113 Identities=22% Similarity=0.162 Sum_probs=96.9
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
..-|+.++|....+++++..-+.. ....++ .+ ..++..+=++..++.++..|+++..+..+|.+++. ++.+.+|.
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~-~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA~ 348 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPR-LCRLIP-RL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKAS 348 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChh-HHHHHh-hc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHHH
Confidence 345799999999999999976655 222333 33 35899999999999999999999999999998888 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.+|+.|++..| +...+..+|.++-++|+..++++...+
T Consensus 349 ~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 349 EALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999988 677889999999999999999976555
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=5.9e-05 Score=69.07 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.+..+.|..+|.+|++..+-...+|..+|..-+...++.+.|...|+++++..|.+...|..|.+.+.. .++.+.|..+
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~l 92 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHH
Confidence 345789999999999666667888888885556434666779999999999999999999999988877 8999999999
Q ss_pred HHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHH
Q 024243 212 FDQAVKAAPDDC---YVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 212 ~ekAL~~~P~~~---~~~~~la~il~~~Ge~eea~ 243 (270)
|++++..-|.+. .+|..+..+-...|+.+...
T Consensus 93 fer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 93 FERAISSLPKEKQSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp HHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998877654 57777777777777655444
No 161
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.85 E-value=0.0002 Score=71.14 Aligned_cols=114 Identities=18% Similarity=0.100 Sum_probs=96.1
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
|...|++++|+.+++++|+.+|+.++.+...|+++. +.|++.+|.+.++.|-++|+.|..+-...+..+++ .|++++|
T Consensus 204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e~A 281 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIEEA 281 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHHHH
Confidence 445689999999999999999999999999998888 58999999999999999999999888888877777 9999999
Q ss_pred HHHHHHHHHhC--CCC-------HHHHHHHHHHHHHcCCcHHHHh
Q 024243 209 ESYFDQAVKAA--PDD-------CYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 209 ~~~~ekAL~~~--P~~-------~~~~~~la~il~~~Ge~eea~~ 244 (270)
+..+..-.+.+ |.. ..+...-|..|.+.|++..|-.
T Consensus 282 ~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 282 EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99998876654 211 3344556888889898887763
No 162
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.83 E-value=0.00023 Score=58.85 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND----GNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n----~~al~~lA~ll~~~~g~~e~A~ 209 (270)
+.+.|++.|.++|.+-|.++.++++.|..+. .+|+.++|+.-+++|+++--.- -.++...| ++|+.+|+-++|.
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg-~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRG-LLYRLLGNDDAAR 135 (175)
T ss_pred chHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH-HHHHHhCchHHHH
Confidence 6788888888888888888888888886665 4788888888888888876432 23455666 5566688888888
Q ss_pred HHHHHHHHhCCCC
Q 024243 210 SYFDQAVKAAPDD 222 (270)
Q Consensus 210 ~~~ekAL~~~P~~ 222 (270)
..|+.|-++....
T Consensus 136 ~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 136 ADFEAAAQLGSKF 148 (175)
T ss_pred HhHHHHHHhCCHH
Confidence 8888777665543
No 163
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.82 E-value=0.00038 Score=57.56 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=73.6
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Q 024243 159 YARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD----DCYVLASHAHFLW 234 (270)
Q Consensus 159 lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~----~~~~~~~la~il~ 234 (270)
-|..+.+ .|+.+.|++.|.+||.+-|.++.+|.+.|..+-. +|+.++|++.+++|+++.-+ -+.++...|.+|.
T Consensus 49 ~~valaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 4545555 6999999999999999999999999999966555 99999999999999999654 3778889999999
Q ss_pred HcCCcHHHHhc
Q 024243 235 DADEDEEDEQV 245 (270)
Q Consensus 235 ~~Ge~eea~~~ 245 (270)
.+|+++.+...
T Consensus 127 l~g~dd~AR~D 137 (175)
T KOG4555|consen 127 LLGNDDAARAD 137 (175)
T ss_pred HhCchHHHHHh
Confidence 99999888743
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.81 E-value=3.9e-05 Score=70.05 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=83.0
Q ss_pred cccccCCChHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHhCC--CC----HHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQAD--PRN----PLLLSNYARFLKEAR-GDLLKAEEYCARAILMSP--ND----GNVLSM 193 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeld--P~n----~~al~~lA~~l~~~~-Gd~~eA~e~~ekAIeldP--~n----~~al~~ 193 (270)
..|... ++++|+.+|++++++. -++ ..++..+|.++ +.. +++++|+++|++|+++.. +. ..++..
T Consensus 83 ~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~y-e~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 83 NCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIY-EEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 334444 7888888888888762 222 45666777444 345 788999999988888743 11 345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCCC
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVKAAPDD-------CYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQR 259 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~~-------~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~~ 259 (270)
+|.++.. .++|++|+.+|+++....-++ ...++....++...|+...+....+......|.|...
T Consensus 161 ~A~l~~~-l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 161 AADLYAR-LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 7766666 888999999998887753221 1344566667778888877777666655566777654
No 165
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.81 E-value=0.00016 Score=65.71 Aligned_cols=91 Identities=24% Similarity=0.201 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 024243 156 LSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVLASH 229 (270)
Q Consensus 156 l~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~~~l 229 (270)
.++.|.-++. .|+|..|+..|..-|+..|+. +++++.||.++|. +|++++|..+|..+++..|++ ++.++.+
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4455545554 699999999999999999975 5789999999998 999999999999999998875 7899999
Q ss_pred HHHHHHcCCcHHHHhccCC
Q 024243 230 AHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 230 a~il~~~Ge~eea~~~~e~ 248 (270)
|.++.++|+.++|...++.
T Consensus 222 g~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 9999999999999865433
No 166
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.80 E-value=0.0011 Score=52.91 Aligned_cols=115 Identities=23% Similarity=0.259 Sum_probs=74.8
Q ss_pred ccccCCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADP---RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHK 203 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP---~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-n~~al~~lA~ll~~~~g 203 (270)
.|...++++.|...|++++..+| .....+..++..+. ..+++++|+..+.+++...+. ....+..++..+.. .+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence 34556677777777777777666 23444444443333 357777777777777777777 57777777755555 67
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
++++|..++.+++...|+....+..++..+...++.+++..
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 77777777777777777766666666666665554555543
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.77 E-value=0.00056 Score=59.53 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=84.0
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhh----------CCHHHHHHHHHHHHHhCCCCHHHH----
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEAR----------GDLLKAEEYCARAILMSPNDGNVL---- 191 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~---~al~~lA~~l~~~~----------Gd~~eA~e~~ekAIeldP~n~~al---- 191 (270)
|...+++++|+..|++.++..|+++ .+++.+|.+.+... ....+|...|+..|+..|+...+-
T Consensus 52 ~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~ 131 (203)
T PF13525_consen 52 YYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKK 131 (203)
T ss_dssp HHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHH
Confidence 3456899999999999999999985 57777776654321 234689999999999999876542
Q ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHH
Q 024243 192 -------------SMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 192 -------------~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~~~la~il~~~Ge~eea~ 243 (270)
+..|..+++ .+.+..|+..++.+++..|+. ..++..+...+..+|..+.++
T Consensus 132 ~l~~l~~~la~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 132 RLAELRNRLAEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 223433555 899999999999999999986 457888899999999988554
No 168
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.73 E-value=8.9e-05 Score=45.29 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 024243 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPND 187 (270)
Q Consensus 154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n 187 (270)
.+++.+|.+++ ..|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 45556664444 3566666666666666666654
No 169
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0001 Score=68.88 Aligned_cols=94 Identities=12% Similarity=0.101 Sum_probs=79.2
Q ss_pred cccccccCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQADPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeldP~n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~ 200 (270)
-|+.|...++|..|+..|.+.|+..-.+ +..+.|.|.+-+. .|+|..|+.-|.+|+.++|.+..+++.=|.++++
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 4566677789999999999999985444 4566688866664 7999999999999999999999999999988888
Q ss_pred HcCCHHHHHHHHHHHHHhCC
Q 024243 201 SHKDASRAESYFDQAVKAAP 220 (270)
Q Consensus 201 ~~g~~e~A~~~~ekAL~~~P 220 (270)
++++++|+.+.+..+.++-
T Consensus 166 -Le~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 166 -LERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred -HHHHHHHHHHHhhhhhhhH
Confidence 9998888888887776654
No 170
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.71 E-value=6.9e-05 Score=46.14 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 024243 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (270)
Q Consensus 154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~ 186 (270)
.+|+++|.++. .+|++++|+++|++||+++|+
T Consensus 2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence 45666664444 356666666666666666665
No 171
>PLN03077 Protein ECB2; Provisional
Probab=97.70 E-value=0.0004 Score=72.48 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=82.3
Q ss_pred cCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
..|.+++|..+|+.+.+..+- +...+..+...+. ..|++++|.+++++. .+.| +..+|..+-..+.. .++.+.|
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~-~~~~e~~ 676 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITP-DPAVWGALLNACRI-HRHVELG 676 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-cCChHHH
Confidence 346777788888777754322 2345555665555 468888888887764 3556 46666666655544 8888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+...+++++++|++...+..++++|...|+++++...
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 8889999999999999999999999999999999854
No 172
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.68 E-value=0.00013 Score=44.57 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243 188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (270)
Q Consensus 188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~ 222 (270)
+.+++.+|.+++. +|++++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 4688999988888 999999999999999999986
No 173
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.66 E-value=0.0012 Score=52.66 Aligned_cols=114 Identities=21% Similarity=0.182 Sum_probs=85.7
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhhCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYAR-FLKEARGDLLKAEEYCARAILMSP---NDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~-~l~~~~Gd~~eA~e~~ekAIeldP---~n~~al~~lA~ll~~~~g~~ 205 (270)
...+++..++..+.+++..++.+......... .+. ..+++++|..+|++++..+| .....+..++..+.. .+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 183 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDPDLAEALLALGALY-ELGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRY 183 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCH
Confidence 34566888888999888888777555544553 344 47999999999999988777 345555555544444 7889
Q ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 206 SRAESYFDQAVKAAPD-DCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~-~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+.|+..+.++++..+. ....+..++..+...++.+.+...
T Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHH
Confidence 9999999999999988 688888888888888877777654
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.64 E-value=0.00038 Score=63.73 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
.+|..|.+++.+ .+..+.|-..|.+|++..+-..++|..+|.+-+...++.+.|..+|+.+++..|.+..+|..+..++
T Consensus 2 ~v~i~~m~~~~r-~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRR-TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 578888888876 5669999999999997666788999999977677567777799999999999999999999999999
Q ss_pred HHcCCcHHHHhccCC
Q 024243 234 WDADEDEEDEQVGEE 248 (270)
Q Consensus 234 ~~~Ge~eea~~~~e~ 248 (270)
...++.+.+....|.
T Consensus 81 ~~~~d~~~aR~lfer 95 (280)
T PF05843_consen 81 IKLNDINNARALFER 95 (280)
T ss_dssp HHTT-HHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHH
Confidence 999999888865444
No 175
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00047 Score=62.34 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=81.1
Q ss_pred ccccccccCCChHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 024243 124 RWGSWDPNNHGNNSTDLYYQKMIQA--------DPRN----------PLLLSNYARFLKEARGDLLKAEEYCARAILMSP 185 (270)
Q Consensus 124 ~gg~~Ye~~gd~~eA~~~y~kALel--------dP~n----------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP 185 (270)
.|.++|.. ++|.+|...|+.|+.. .|.+ ...+.||.+++. ..|+|-++++.|...|..+|
T Consensus 184 ~GN~lfk~-~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 184 EGNRLFKL-GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred hhhhhhhh-ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCC
Confidence 45566654 6999999999988642 4544 356678887777 47999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024243 186 NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYV 225 (270)
Q Consensus 186 ~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~ 225 (270)
.|..+|+..|..... .=+.++|.+.|.++|+++|.-..+
T Consensus 262 ~nvKA~frRakAhaa-~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAA-VWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred chHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999988776 677899999999999999965443
No 176
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.64 E-value=4.2e-05 Score=55.71 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=45.6
Q ss_pred cccccCCChHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQA---D----PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALel---d----P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld 184 (270)
..|..+|++++|+.+|++++++ . |.-..+++++|.++. ..|++++|++++++|+++.
T Consensus 13 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 13 RVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhh
Confidence 4566789999999999999976 2 223577889996666 5899999999999999863
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.64 E-value=0.00043 Score=60.36 Aligned_cols=113 Identities=13% Similarity=0.033 Sum_probs=97.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL-MSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe-ldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
=|.+.......+.+++.|....-+ .+|..+.+ .|++.+|+.+|++++. +...|+..+..+|...+. .+++..|...
T Consensus 70 ldP~R~~Rea~~~~~~ApTvqnr~-rLa~al~e-lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~t 146 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQNRY-RLANALAE-LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQT 146 (251)
T ss_pred cChhHHHHHHHHHHhhchhHHHHH-HHHHHHHH-hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHH
Confidence 366777777788888889876654 78888886 7999999999999986 456899999999999998 9999999999
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 212 FDQAVKAAPD--DCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 212 ~ekAL~~~P~--~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+++..+.+|. .++....+++.|...|.+.+++.+.+.
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~ 185 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV 185 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH
Confidence 9999999985 688889999999999999988876555
No 178
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.62 E-value=0.001 Score=55.34 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVL 226 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~ 226 (270)
+..++.-|...+. .|+|.+|++.|+......|. -..+...++.+++. .+++++|+..+++-++++|.| +.++
T Consensus 10 ~~~ly~~a~~~l~-~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEALQ-KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 5666777766664 79999999999999999985 44688899999998 999999999999999999987 5678
Q ss_pred HHHHHHHHHcCC
Q 024243 227 ASHAHFLWDADE 238 (270)
Q Consensus 227 ~~la~il~~~Ge 238 (270)
+..|.+++.+.+
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 888888887754
No 179
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.58 E-value=0.00015 Score=44.56 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243 188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (270)
Q Consensus 188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~ 222 (270)
+.+|+++|.+++. ++++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence 4689999977777 999999999999999999974
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.00015 Score=66.19 Aligned_cols=120 Identities=15% Similarity=0.091 Sum_probs=86.1
Q ss_pred ccccccccCCChHHHHHHHHHHHHhCC-----CC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC--C----CHHHH
Q 024243 124 RWGSWDPNNHGNNSTDLYYQKMIQADP-----RN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSP--N----DGNVL 191 (270)
Q Consensus 124 ~gg~~Ye~~gd~~eA~~~y~kALeldP-----~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP--~----n~~al 191 (270)
.++..|...+++++|..+|.++.+..- .. ...+...+ .++. ..++++|+++|++|+++.- + -+.++
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa-~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAA-NCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 356677778999999999999977632 22 34444555 4443 4699999999999999852 2 24577
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 192 SMYGDLIWQSH-KDASRAESYFDQAVKAAPD--D----CYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 192 ~~lA~ll~~~~-g~~e~A~~~~ekAL~~~P~--~----~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
..+|.++.. . +++++|+.+|++|+++.-. . ...+..++.++...+++++|.+..
T Consensus 118 ~~lA~~ye~-~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~ 178 (282)
T PF14938_consen 118 KELAEIYEE-QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIY 178 (282)
T ss_dssp HHHHHHHCC-TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 888866665 6 8999999999999988432 1 456778899999999999998643
No 181
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.54 E-value=0.00059 Score=69.70 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=57.8
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.|++++|.+++++. ...| +..+|..+...+.. .|+++.|...+++++++.|++...+..+.++|...|+.+++.+.
T Consensus 475 ~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 475 EGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRI-HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 46666666665543 1233 45566666655555 88999999999999999999988999999999999999999864
No 182
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.52 E-value=0.00019 Score=63.88 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
-+..++..| +++...|-+.-|.--|.+++.++|.-++++..+| +++...|+|+.|.+.|+-.++++|....+..+.|.
T Consensus 64 RA~l~fERG-vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG-~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 64 RAQLLFERG-VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG-IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHhc-chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHH-HHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 367778888 7888889999999999999999999999999888 66666999999999999999999999999999999
Q ss_pred HHHHcCCcHHHHhcc
Q 024243 232 FLWDADEDEEDEQVG 246 (270)
Q Consensus 232 il~~~Ge~eea~~~~ 246 (270)
.++.-|++.-|.++.
T Consensus 142 ~~YY~gR~~LAq~d~ 156 (297)
T COG4785 142 ALYYGGRYKLAQDDL 156 (297)
T ss_pred eeeecCchHhhHHHH
Confidence 999999999888654
No 183
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0015 Score=64.02 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA 215 (270)
..-...|+.|+...+.+...|.++..+.. ..+.+.+-...|.+++.+.|++++.|..-|.-.+..+-+++.|.++|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 56688999999999999999999995555 46779999999999999999999999999977787566699999999999
Q ss_pred HHhCCCCHHHHHHHHH
Q 024243 216 VKAAPDDCYVLASHAH 231 (270)
Q Consensus 216 L~~~P~~~~~~~~la~ 231 (270)
|+.+|+.+..|..+-+
T Consensus 167 LR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhcCCCChHHHHHHHH
Confidence 9999999988876644
No 184
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.49 E-value=0.00024 Score=66.88 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 156 l~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
+-..|+-++ .+|.|++|+.+|.++|.++|.|+-.+.+.|..|++ ++.|..|+.....|+.++.....+|...+.+-..
T Consensus 100 iKE~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345676666 58999999999999999999999999999977777 9999999999999999999889999999999999
Q ss_pred cCCcHHHHhccC
Q 024243 236 ADEDEEDEQVGE 247 (270)
Q Consensus 236 ~Ge~eea~~~~e 247 (270)
+|...||.+.-|
T Consensus 178 Lg~~~EAKkD~E 189 (536)
T KOG4648|consen 178 LGNNMEAKKDCE 189 (536)
T ss_pred HhhHHHHHHhHH
Confidence 998888775433
No 185
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.47 E-value=0.0027 Score=68.15 Aligned_cols=108 Identities=15% Similarity=0.032 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 133 HGNNSTDLYYQKMIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 133 gd~~eA~~~y~kALeld-P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel--dP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
|++++|..+|+++.+.+ +.+...|+.+...+. ..|++++|.++|++..+. .| |...|..+...+.. .|++++|.
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k-~G~~eeA~ 669 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGH-AGDLDKAF 669 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-CCCHHHHH
Confidence 44444444444444443 223333333333333 234444444444444433 12 23333333333333 44444444
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 210 SYFDQAVKAA-PDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 210 ~~~ekAL~~~-P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
.+|+++.+.. +.+..++..+...|.+.|+.++|.
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4444444332 123444444444444444444444
No 186
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.44 E-value=0.0011 Score=71.18 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=103.8
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~g~~ 205 (270)
.|+....+++|.++|+.+++..-....+|..||.+++. +.+-++|..++.+|++--|. +.+.....|.+.|. .|+.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDa 1616 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDA 1616 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCc
Confidence 46667789999999999999999889999999988884 68889999999999999997 88899999988898 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+++..+|+-.|..+|...++|.-|...-...++.+..+..
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999999999999888888887777653
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.0026 Score=51.75 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRN----------------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV 190 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n----------------------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a 190 (270)
++...++..+++++.+..++ ..++..++..+. ..|++++|+.++++++.++|.+..+
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~ 98 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALL-EAGDYEEALRLLQRALALDPYDEEA 98 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHH
Confidence 45667777777777664222 133344554444 4799999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
+..+-.++.. +|+..+|+.+|+++.+.
T Consensus 99 ~~~lm~~~~~-~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 99 YRLLMRALAA-QGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 9988877777 99999999999887543
No 188
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.43 E-value=0.0015 Score=64.11 Aligned_cols=111 Identities=11% Similarity=0.046 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---------------------C----
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---------------------D---- 187 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---------------------n---- 187 (270)
.+..+-+++-++||+++|+++.++..+|.- ...-..+|+++|++|++.... +
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 578889999999999999999999888721 134577888888887765411 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
..+...+|.++++ +|+.++|++.++..++.+|. +-.+.+++...+..++.+.+.+..+.
T Consensus 259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2234567866666 99999999999999998875 57799999999999999999986543
No 189
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00032 Score=61.76 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=81.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 158 NYARFLKEARGDLLKAEEYCARAILMSPNDG-----NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHF 232 (270)
Q Consensus 158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-----~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~i 232 (270)
.-|+-++ +.|+|++|..-|..||++-|... -.|.+.|-+++. ++..+.|+....+|++++|....++...|.+
T Consensus 100 ~EGN~~F-~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 100 KEGNELF-KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHhh-hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3455566 57999999999999999999654 346666744444 9999999999999999999999999999999
Q ss_pred HHHcCCcHHHHhccCCCCCCCCCC---CCC-CCCChhh
Q 024243 233 LWDADEDEEDEQVGEEPAPPSYNF---QQR-PPLPPHL 266 (270)
Q Consensus 233 l~~~Ge~eea~~~~e~~~~~~p~f---~~~-~~~~~~i 266 (270)
|-++..++++-+..+...-.+|.- +++ ..+|++|
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 999998999886544433334432 223 5566644
No 190
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.39 E-value=0.00062 Score=58.71 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 170 LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH----------KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 170 ~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~----------g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
|+.|.+.++.....||.|++++++.|..+.+ + .-+++|+.-|+.||.++|+...+++++|++|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999987665 3 235688999999999999999999999999987764
No 191
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.38 E-value=0.0023 Score=62.89 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~----n~~al~~lA~ll~~~~g~~e~A 208 (270)
.+.+.|...++...+..|+....++..|+... ..|+.++|++.|++++..... ..-.++.+++++.. +.++++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence 48899999999999999999999999997776 589999999999999964432 23456788877776 8999999
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCc
Q 024243 209 ESYFDQAVKAAPD-DCYVLASHAHFLWDADED 239 (270)
Q Consensus 209 ~~~~ekAL~~~P~-~~~~~~~la~il~~~Ge~ 239 (270)
..+|.+.++.+.- .....+..|.++...++.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999987653 677778888899999988
No 192
>PLN03077 Protein ECB2; Provisional
Probab=97.31 E-value=0.0022 Score=66.96 Aligned_cols=115 Identities=12% Similarity=0.005 Sum_probs=85.3
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel--dP~n~~al~~lA~ll~~~~g~~ 205 (270)
.|.+.|++++|...|+++ +.+...|+.+...+. ..|+.++|+++|++.++. .|+.......+. .+.. .|++
T Consensus 533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~-a~~~-~g~v 605 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTFISLLC-ACSR-SGMV 605 (857)
T ss_pred HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH-HHhh-cChH
Confidence 355568889998888876 567778888886666 479999999999988874 465444433333 4555 8999
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHhccCCC
Q 024243 206 SRAESYFDQAVKAAP--DDCYVLASHAHFLWDADEDEEDEQVGEEP 249 (270)
Q Consensus 206 e~A~~~~ekAL~~~P--~~~~~~~~la~il~~~Ge~eea~~~~e~~ 249 (270)
++|..+|+...+..+ .+...+..+..+|.+.|+.++|.+..++.
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999998884432 25678888899999999999998776553
No 193
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.31 E-value=0.00074 Score=62.88 Aligned_cols=67 Identities=21% Similarity=0.334 Sum_probs=54.4
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
..|+.++|..+|+.|++++|.+++++..+|.+.-. .++.-+|-.+|-+||.+.|.+..++.+.++..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 36888888888888888888888888888855555 78888888888888888888888888877643
No 194
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.30 E-value=0.0058 Score=65.73 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e~A 208 (270)
.|++++|..+|+++.+.... |...|+.+...+. ..|++++|.++|++..+.. | |..+|..+...+.+ .|++++|
T Consensus 485 ~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~-k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k-~G~~deA 561 (1060)
T PLN03218 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA-RAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQ-SGAVDRA 561 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH-CCCHHHH
Confidence 34455555555555443321 3344444443333 2344444444444443322 2 23333333333333 4444444
Q ss_pred HHHHHHHH
Q 024243 209 ESYFDQAV 216 (270)
Q Consensus 209 ~~~~ekAL 216 (270)
.++|++..
T Consensus 562 ~~lf~eM~ 569 (1060)
T PLN03218 562 FDVLAEMK 569 (1060)
T ss_pred HHHHHHHH
Confidence 44444443
No 195
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.0026 Score=63.32 Aligned_cols=108 Identities=10% Similarity=-0.008 Sum_probs=82.9
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
.+++|++|.....+.+...|++..++...-.++.+ .++|++|.++.++-....-.+. ..+..|.+.|+ ++..++|+.
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr-lnk~Dealk 100 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-LDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR-LNKLDEALK 100 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-hhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH-cccHHHHHH
Confidence 46899999999999999999999998877656664 6899988844433322222222 22678888888 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
.++ -.++.+...+...|.+++++|+++++-+
T Consensus 101 ~~~---~~~~~~~~ll~L~AQvlYrl~~ydeald 131 (652)
T KOG2376|consen 101 TLK---GLDRLDDKLLELRAQVLYRLERYDEALD 131 (652)
T ss_pred HHh---cccccchHHHHHHHHHHHHHhhHHHHHH
Confidence 998 5567677788888999999999888863
No 196
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.18 E-value=0.0047 Score=63.15 Aligned_cols=113 Identities=9% Similarity=-0.042 Sum_probs=82.0
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e 206 (270)
|-+.|++++|...|+++. +.+...|+.+...+.. .|++++|.++|++..+.. | |...+..+...+.. .|+++
T Consensus 269 y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~-~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~-~g~~~ 342 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYAL-HGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSR-LALLE 342 (697)
T ss_pred HHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-ccchH
Confidence 455688888888888763 4567778887766664 789999999888887643 4 45566666656666 78888
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 207 RAESYFDQAVKAA-PDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 207 ~A~~~~ekAL~~~-P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
+|..++..+++.. +.+..++..+...|.+.|+.++|....+
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888887775 4466777777778888888777775533
No 197
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.18 E-value=0.0094 Score=54.01 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=67.0
Q ss_pred ccccccc------CCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 024243 125 WGSWDPN------NHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLS 192 (270)
Q Consensus 125 gg~~Ye~------~gd~~eA~~~y~kALeldP~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---al~ 192 (270)
...||.+ .|++++|+..|+++...+|..+ .+...++.+.+ ..+++++|+...++-|.+.|++++ +++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 4556643 4899999999999999998875 66777886777 479999999999999999997664 344
Q ss_pred HHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCC
Q 024243 193 MYGDLIWQSHKD-------ASRAESYFDQAVKAAPDD 222 (270)
Q Consensus 193 ~lA~ll~~~~g~-------~e~A~~~~ekAL~~~P~~ 222 (270)
..+...+....+ ..+|...|+..|+..|+.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 444332221111 124555555566665554
No 198
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0012 Score=59.37 Aligned_cols=79 Identities=15% Similarity=0.069 Sum_probs=73.8
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
...|+.|+..|.+||.++|..+.++.+.|.++++ .++++.+.....+|++++|+.....+.++..+.....++++...+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 5789999999999999999999999999966676 999999999999999999999999999999999999999998654
No 199
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.13 E-value=0.01 Score=56.60 Aligned_cols=111 Identities=16% Similarity=0.083 Sum_probs=91.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
.|+|.+|++...++-+..+.-... +.+|.-.....||++.|-.+..+|-+.-++ .-.+....+.++.. .+++..|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~-~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLA-YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-RRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHH-HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-CCCchhHHH
Confidence 379999999999976665554444 455545555679999999999999998543 44567778877777 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
-+.++++..|.++.++.....+|+..|++.+-..
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999888764
No 200
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.12 E-value=0.0002 Score=69.60 Aligned_cols=81 Identities=12% Similarity=-0.035 Sum_probs=74.1
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
..+|+.|+.+|.+||+++|+++..+.+.+..+.. .++|-.|+..+.+|++.+|.....++..|.+....+++.++-...
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 5899999999999999999999999999955555 999999999999999999999999999999999999999988654
Q ss_pred CC
Q 024243 247 EE 248 (270)
Q Consensus 247 e~ 248 (270)
+.
T Consensus 96 ~~ 97 (476)
T KOG0376|consen 96 EK 97 (476)
T ss_pred HH
Confidence 44
No 201
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.12 E-value=0.005 Score=63.75 Aligned_cols=109 Identities=11% Similarity=-0.000 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
+++.+|.+...+.++..|+-..+...-|-.+. +.|+.++|..+++..-...++|...+..+-.++-. ++++++|..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHHH
Confidence 58999999999999999999999988886666 58999999977777777777888888888855555 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
++++..+|. ...++.+=++|.+.+.+.+..+
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 8888999999999888777664
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.0025 Score=58.29 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHHcCCH
Q 024243 133 HGNNSTDLYYQKMIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAIL----MS--PNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 133 gd~~eA~~~y~kALeld-P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe----ld--P~n~~al~~lA~ll~~~~g~~ 205 (270)
++|.-....|.++++.+ |.++.....++++-.+ .||.+-|..+|++.-+ ++ .++..++.+.+.++.- .+++
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~ 268 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNF 268 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccch
Confidence 46677788888888888 6678888888877775 6999999888884433 33 3455566677744444 8888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCC
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPS 253 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~ 253 (270)
..|...|.+++..||.++.+-.+.|.++..+|+..+|.+.++- .+..|
T Consensus 269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 8899999999999999999889999999889988888877666 44333
No 203
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.11 E-value=0.00015 Score=67.92 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=76.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
+|.+++|+..|..+|+++|..+.++...+.++. .+++...|+.-|..||++||+...-+-..+... +.+|++++|..+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~-rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE-RLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHH-HHhhchHHHHHH
Confidence 478999999999999999999999999997777 489999999999999999998887776666333 348999999999
Q ss_pred HHHHHHhCCC
Q 024243 212 FDQAVKAAPD 221 (270)
Q Consensus 212 ~ekAL~~~P~ 221 (270)
|..+++++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 9999998764
No 204
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0057 Score=55.87 Aligned_cols=109 Identities=19% Similarity=0.076 Sum_probs=86.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hh--hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLK-EA--RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~-~~--~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
...++-|+..++++.+++-+.... .||..+. .. .+.+..|.-+|+..-+..|-.+..+...|.+... ++++++|
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLt--QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeA 226 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLT--QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEA 226 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHH--HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHH
Confidence 368899999999999887765433 2332221 11 2468888889999988788888999999977776 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
...++.||..+++++.++.++-.+-...|.+.+.-
T Consensus 227 e~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 227 ESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 99999999999999999999999999999886655
No 205
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.05 E-value=0.0055 Score=63.89 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=88.4
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNP-----LLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGDL 197 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~-----~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA~l 197 (270)
+...|++++|..+++++++..|... .++..+|..+. ..|++++|..+++++++..... ..++..+|.+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 4457899999999999998655432 34566775555 5899999999999999764421 2355677877
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 198 IWQSHKDASRAESYFDQAVKAAPD--------DCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 198 l~~~~g~~e~A~~~~ekAL~~~P~--------~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++. .|++++|..++++++++... ....+..++.+++..|+.+++....+.
T Consensus 541 ~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 541 LFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHH-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 777 99999999999999986321 234456778899999999999865433
No 206
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0063 Score=56.69 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=50.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~ 200 (270)
..+|+.|+.++.--.+.+|.+...+..+|.++|. ..+|..|..+|++.-.+.|.........|..+|+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 3577888888888888888888888888877764 6788888888888877777766665555554444
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.01 E-value=0.0018 Score=62.47 Aligned_cols=117 Identities=11% Similarity=-0.030 Sum_probs=90.2
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh----CCCCHH--HHHH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILM----SPNDGN--VLSM 193 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel----dP~n~~--al~~ 193 (270)
|+-|-..|+|++|+.+-+.-|++.... -.++.++|+++.. .|+++.|+++|++++.+ ...-.+ ..+.
T Consensus 202 GNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-lg~fe~A~ehYK~tl~LAielg~r~vEAQscYS 280 (639)
T KOG1130|consen 202 GNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS 280 (639)
T ss_pred CceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 345667799999999998888775432 3677889988875 79999999999886544 344444 4556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVKAAP------DDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~~~P------~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+|+.+.. ..++++|+.|+++-|.+.- -...+++.+|+.+-.+|+.+.|-.
T Consensus 281 LgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 281 LGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 7777777 8999999999998776643 246789999999999999888763
No 208
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.0043 Score=58.91 Aligned_cols=109 Identities=12% Similarity=-0.007 Sum_probs=68.3
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC--------------------------------------
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD-------------------------------------- 169 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd-------------------------------------- 169 (270)
+|...|+|++|...|+.+.+.+--+..++.++|-+.+ -.|.
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh 144 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFH 144 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4455678899998888887766556666666663222 2333
Q ss_pred ----------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243 170 ----------------------LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLA 227 (270)
Q Consensus 170 ----------------------~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~ 227 (270)
|.+|++.|.+.+.-+|+....-..+|.+++. +.-++-+.+.+.-.+...|+.+.+..
T Consensus 145 ~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-lDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 145 SSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-LDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred HHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-cchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 4556666666666666665555556644444 66666666666666666666666666
Q ss_pred HHHHHHHHcCC
Q 024243 228 SHAHFLWDADE 238 (270)
Q Consensus 228 ~la~il~~~Ge 238 (270)
..+..++++=+
T Consensus 224 Lkacn~fRl~n 234 (557)
T KOG3785|consen 224 LKACNLFRLIN 234 (557)
T ss_pred HHHHHHhhhhc
Confidence 66666665533
No 209
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.98 E-value=0.0016 Score=39.69 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAILMSP 185 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP 185 (270)
+|+.+|.++. .+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYE-QLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHH-HTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 4455553333 35555555555555555555
No 210
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0068 Score=57.22 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPND---GNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel-dP~n---~~al~~lA~ll~~~~g~~e~A 208 (270)
|+..+|-...++.|+..|.+..++..-=..++ ..|+.+.-...+++.|-. ||+- ..+.-+||..+.+ .|-|++|
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhH
Confidence 57788888899999999999888765544444 468888888899999887 7765 4455566644555 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+...+++++++|.|+.+.-..+.++...++..++.+.+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 99999999999999999999999999999988887654
No 211
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=0.01 Score=58.21 Aligned_cols=109 Identities=19% Similarity=0.285 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
.|.+.+...|+..|++=|.- +.+|..+|.+... +-+...|.+.+..||-+-|.+--.- .|-.+-.+ ++++++.
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR-q~~l~~ARkiLG~AIG~cPK~KlFk-~YIelElq-L~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR-QLNLTGARKILGNAIGKCPKDKLFK-GYIELELQ-LREFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH-HcccHHHHHHHHHHhccCCchhHHH-HHHHHHHH-HhhHHHH
Confidence 68999999999999998875 6888889977774 7899999999999999999765433 44445555 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
..+|++-|+..|.++.+|..+|.+-..+|+.+.+..
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999999999999999888773
No 212
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.96 E-value=0.0017 Score=39.67 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (270)
Q Consensus 189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~ 222 (270)
.+|+.+|.++.. +|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence 578999977777 999999999999999999954
No 213
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.011 Score=59.13 Aligned_cols=108 Identities=12% Similarity=0.041 Sum_probs=81.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC---------------------------
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------------------------- 184 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------------------------- 184 (270)
.+..++|+..++ -.++.+..++...|.++|. +++|++|...|+..++-+
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 457888888888 5677777788889988885 899999999999885443
Q ss_pred ---CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-------HHHHHHHHHHHHHcCCcHHHHh
Q 024243 185 ---PN-DGNVLSMYGDLIWQSHKDASRAESYFDQAVKA--------APDD-------CYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 185 ---P~-n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~--------~P~~-------~~~~~~la~il~~~Ge~eea~~ 244 (270)
|. ..+.+++.|-++.. .|+|.+|++.+++|+++ +-++ ..+...++.++..+|+.+++-.
T Consensus 168 ~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred cCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22 45667888855555 99999999999999444 1111 2356677889999999888875
No 214
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.93 E-value=0.0014 Score=61.01 Aligned_cols=65 Identities=15% Similarity=0.351 Sum_probs=59.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~l 197 (270)
.|+.++|..+|+.|+.++|+++.++..+|.+.- ...+.-+|-++|-+|+.++|.|.+++.+.+..
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 478899999999999999999999999996665 56999999999999999999999999888754
No 215
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.86 E-value=0.011 Score=61.69 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=86.8
Q ss_pred cccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--------CHHHHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--------DGNVLSMY 194 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--------n~~al~~l 194 (270)
+...|++++|..+++++++..... ..++..+|..++ ..|++++|.+++++++++-.. ...++..+
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 345689999999999999764321 245567786666 489999999999999986321 23345567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPD-----DCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~-----~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
|.+++. .|++++|..++++++..... ....+..++.++...|+.+++...
T Consensus 580 a~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 634 (903)
T PRK04841 580 AQLLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRY 634 (903)
T ss_pred HHHHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 877777 89999999999999886432 355666788899999999888754
No 216
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.86 E-value=0.0063 Score=60.84 Aligned_cols=104 Identities=18% Similarity=0.077 Sum_probs=89.3
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPL-LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~-al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
...+|+...|++++..|+-..|.... .+.++|+++.. -+-...|..++.+++.++-..+-.++.+|++++. +.+.++
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~~ 694 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNISG 694 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhHH
Confidence 34567889999999999999998643 35588977774 6888999999999999998888889999988887 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
|++.|.+|++.+|+++.....+-.|-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999988877766655
No 217
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.013 Score=53.66 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=50.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA-ESY 211 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A-~~~ 211 (270)
..+..|..+|+++-+..|-.+..++..|.+.. .+++|++|+..++.|+..++++++++.++-.+... .|.-.++ .++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHH
Confidence 34555566666665555555556555553333 35666666666666666666666666666633333 4444333 345
Q ss_pred HHHHHHhCCCCHHH
Q 024243 212 FDQAVKAAPDDCYV 225 (270)
Q Consensus 212 ~ekAL~~~P~~~~~ 225 (270)
+.+....+|+++.+
T Consensus 265 l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 265 LSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhcCCcchHH
Confidence 55555556655543
No 218
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.0096 Score=58.34 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=96.1
Q ss_pred cccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
.+.|-+++++++.|...+++||..+-.+...|..|+.+-. ...+...|...+.+|+.+-|.--..|+.|..+-- .+|+
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE-~LgN 156 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE-MLGN 156 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH-Hhcc
Confidence 3456778899999999999999999999999999997766 4688899999999999999988888888884444 4888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
..-|.++|++=++-.| +.++|..+..+-.+..+.+.+..
T Consensus 157 i~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 157 IAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred cHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888888888 56777777777777777666664
No 219
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.84 E-value=0.0019 Score=60.21 Aligned_cols=92 Identities=8% Similarity=0.051 Sum_probs=77.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 139 DLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 139 ~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
+-.|.++....|+++..|..++.... ..+-|.+-...|.+++++.|.|.+.|..-+..-+...++++.+...|.++++.
T Consensus 93 ~f~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 93 IFELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred eEeeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 34566677778999999999994444 67999999999999999999999999875544444499999999999999999
Q ss_pred CCCCHHHHHHHHH
Q 024243 219 APDDCYVLASHAH 231 (270)
Q Consensus 219 ~P~~~~~~~~la~ 231 (270)
+|+++.+|+.+-+
T Consensus 172 N~~~p~iw~eyfr 184 (435)
T COG5191 172 NSRSPRIWIEYFR 184 (435)
T ss_pred CCCCchHHHHHHH
Confidence 9999998877644
No 220
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.012 Score=52.97 Aligned_cols=133 Identities=11% Similarity=0.008 Sum_probs=87.9
Q ss_pred cccccccCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH------HHHH
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPL------LLSNYARFLKEARGDLLKAEEYCARAILMSPNDG------NVLS 192 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeldP~n~~------al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~------~al~ 192 (270)
+..+|... +..+|+.++++++++..+-.. .+..+|..+-....++++|+.+|++|-+-...+. ..+.
T Consensus 80 A~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 80 AANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred HHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 44555554 788888888888888655432 2335663333233789999999999987665322 2233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-------HHHHHHHHcCCcHHHHhccCCCCCCCCCCCCC
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLA-------SHAHFLWDADEDEEDEQVGEEPAPPSYNFQQR 259 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~-------~la~il~~~Ge~eea~~~~e~~~~~~p~f~~~ 259 (270)
--|....+ .++|.+|+..|++.....-++....+ ..+.+++...+.-.+...+++.+-+.|+|.+.
T Consensus 159 KvA~yaa~-leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 159 KVAQYAAQ-LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 34433334 89999999999999988777655444 44555555455555556677778889999775
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.014 Score=53.92 Aligned_cols=110 Identities=19% Similarity=0.150 Sum_probs=74.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHcCCHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD--LIWQSHKDASRAE 209 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~--ll~~~~g~~e~A~ 209 (270)
.+++.+|...|..+++.+|++..+...|+.++.. .|+.+.|..++...=.-.. +.......+. ++.+ .....+ .
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~q-aa~~~~-~ 222 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQ-AAATPE-I 222 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHH-HhcCCC-H
Confidence 4688888999999999999998888888877775 6888888777665322111 1111111121 2222 222111 2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
..+++.+..+|+|..+.+.++..+...|+.++|-+.
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456677788899999999999999999998888764
No 222
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0061 Score=55.29 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PN----------DGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~----------n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
..++..-|+-++ +.|+|.+|...|+.||..- |. ....+.+|+.+++. .++|-++++....
T Consensus 178 v~~l~q~GN~lf-k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~se 255 (329)
T KOG0545|consen 178 VPVLHQEGNRLF-KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSE 255 (329)
T ss_pred hHHHHHhhhhhh-hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHH
Confidence 356677888888 4899999999999886431 33 44567888877776 9999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243 215 AVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN 255 (270)
Q Consensus 215 AL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~ 255 (270)
.|..+|.+..+++..|.+....=+.++|.........++|+
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 99999999999999999998887877777654443334443
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0089 Score=54.79 Aligned_cols=101 Identities=15% Similarity=0.198 Sum_probs=80.2
Q ss_pred cCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 131 NNHGNNSTDLYYQKMIQAD------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeld------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
+-||.+.|..+++++-+.+ .++-.++.+.+ +++...+++..|...|.+.+..||.++.+..+.|.++.- .|+
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a-~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY-lg~ 301 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA-FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY-LGK 301 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh-hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH-HHH
Confidence 3468899999999554332 34456666777 555567899999999999999999999999999955555 899
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 024243 205 ASRAESYFDQAVKAAPDD---CYVLASHAHFL 233 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~---~~~~~~la~il 233 (270)
..+|+...++++++.|.. ..+.+++..+|
T Consensus 302 l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 999999999999999963 45666666655
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.015 Score=54.98 Aligned_cols=113 Identities=15% Similarity=0.058 Sum_probs=87.9
Q ss_pred ccCCChHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 130 PNNHGNNSTDLYYQKMIQA-DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALel-dP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
.-+|+...-...+++.+-. ||+- ..+...|+..+.+ +|-|++|++..++|+++|+.|..+....+.++-. .+++
T Consensus 148 fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~r~ 225 (491)
T KOG2610|consen 148 FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-NGRH 225 (491)
T ss_pred HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cchh
Confidence 3456777778888998888 7777 5666678855664 8999999999999999999999999999988877 9999
Q ss_pred HHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcHHHHh
Q 024243 206 SRAESYFDQAVKAAPD----DCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~----~~~~~~~la~il~~~Ge~eea~~ 244 (270)
.++++..++--..-.. ...-|...+.++..-++++.+.+
T Consensus 226 Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 226 KEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999988765432221 23456667778877778877763
No 225
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.56 E-value=0.066 Score=50.02 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=78.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 139 DLYYQKMIQADPRNPLLLSNYARFLKEAR-----------GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 139 ~~~y~kALeldP~n~~al~~lA~~l~~~~-----------Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
...|.+.++.+|.|..+|..|..+--... .-.+.-+.+|++||+.+|++...+..|-.++.+ .-+.++
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~ 83 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEK 83 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Confidence 46788999999999999999985432211 114677889999999999999999888877766 778889
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
...-+++++..+|++...|..+-.....
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999988888766554
No 226
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.039 Score=50.50 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS-RAESY 211 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e-~A~~~ 211 (270)
..-..|.++-+.+|.++|.|-.+|...-.++.....+..+-++++...++-+|.|.++|...-.+.-. .|+.. +-++.
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~rELef 135 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFRELEF 135 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccchHHH
Confidence 35577888888889999999999977666666556789999999999999999999999888855444 89988 88999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
...++..+.++-.+|.....++..-+.++.+-
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999998888876665
No 227
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.45 E-value=0.0062 Score=36.50 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024243 190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (270)
Q Consensus 190 al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~ 221 (270)
+++.+|.++.. .|++++|+.+|+++++..|+
T Consensus 2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 34445544443 45555555555555555554
No 228
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.43 E-value=0.029 Score=60.75 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=65.8
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHH
Q 024243 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~~~~la~il~~~Ge~eea~ 243 (270)
....+++|.++|++-++..-+-..+|..|+..+++ +++.+.|..++.+||+.-|. |..+....|.+.++.|+.+..+
T Consensus 1542 k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGR 1620 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGR 1620 (1710)
T ss_pred HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhH
Confidence 45677888888888888888788888888877777 78888888888888888887 7778888888888888887776
Q ss_pred hccCC
Q 024243 244 QVGEE 248 (270)
Q Consensus 244 ~~~e~ 248 (270)
..-|.
T Consensus 1621 tlfEg 1625 (1710)
T KOG1070|consen 1621 TLFEG 1625 (1710)
T ss_pred HHHHH
Confidence 55444
No 229
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.025 Score=53.91 Aligned_cols=102 Identities=12% Similarity=0.012 Sum_probs=74.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~-~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
+.||..|+.+++-.+..+.... ..-.-+|.+.+ +.|||++|...|.-+.+.+--+.+.+.++|-+.+- .|.|.+|..
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHH
Confidence 4799999999998887765544 23233564555 68999999999999999888899999999966666 999999988
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADED 239 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~ 239 (270)
+-.+| |+++--...+-++..+.+++
T Consensus 113 ~~~ka----~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 113 IAEKA----PKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHhhC----CCChHHHHHHHHHHHHhCcH
Confidence 77765 55544433333333444443
No 230
>PRK10941 hypothetical protein; Provisional
Probab=96.39 E-value=0.047 Score=50.09 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=60.2
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
..+++++|..+.++.+.++|+++.-+...|.++.+ ++.+..|...++..++..|+++.+......+.
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 57999999999999999999999999999966666 99999999999999999999998877666554
No 231
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.33 E-value=0.013 Score=58.03 Aligned_cols=88 Identities=22% Similarity=0.128 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
....|+..|.++++..|.....+.++|.++..+. |+.-.|+.-|..|+++||....+++.|+..+.+ .+++.+|+.+
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~ 467 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhh
Confidence 6778899999999999999999999997776432 677889999999999999999999999988888 9999999998
Q ss_pred HHHHHHhCCCC
Q 024243 212 FDQAVKAAPDD 222 (270)
Q Consensus 212 ~ekAL~~~P~~ 222 (270)
...+...+|.+
T Consensus 468 ~~alq~~~Ptd 478 (758)
T KOG1310|consen 468 HWALQMSFPTD 478 (758)
T ss_pred HHHHhhcCchh
Confidence 88887777743
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.041 Score=50.01 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=86.3
Q ss_pred CCccccccccCCChHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHhhCCHHHHHHHHHHHHHhC-----CCCHHH
Q 024243 122 DGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLL------SNYARFLKEARGDLLKAEEYCARAILMS-----PNDGNV 190 (270)
Q Consensus 122 ~~~gg~~Ye~~gd~~eA~~~y~kALeldP~n~~al------~~lA~~l~~~~Gd~~eA~e~~ekAIeld-----P~n~~a 190 (270)
+..+...|...+++++|...+.+|.+-..+|...| -..+ .+......+.+++.+|++|+.+. |+-+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaa-mLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAA-MLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 44566677778999999999999997766664333 2333 44445689999999999999887 443333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHh
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~ 244 (270)
-...|.-..+ .-+.++|+.+|++++.+--.+ ...+...+++|.+...+.|+..
T Consensus 113 aleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 113 ALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 3334434555 789999999999999875433 2344556778888888888874
No 233
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.25 E-value=0.026 Score=43.14 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 024243 137 STDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND 187 (270)
Q Consensus 137 eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n 187 (270)
..+..+++.++.+|+|..+.+.+|..+. ..|++++|++.+..+++.++++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence 3467788888888888888888886666 4788888888888888888754
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.23 E-value=0.039 Score=52.86 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=88.1
Q ss_pred cccCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHh--hCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHH--
Q 024243 129 DPNNHGNNSTDLYYQKMIQA----DPRNPLLLSNYARFLKEA--RGDLLKAEEYCARA-ILMSPNDGNVLSMYGDLIW-- 199 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALel----dP~n~~al~~lA~~l~~~--~Gd~~eA~e~~ekA-IeldP~n~~al~~lA~ll~-- 199 (270)
|...++|+.-+.+.+.+-.+ -++.+.+.+.||.++.+. .|+.++|.+.+..+ ...++.+++++-.+|.++-
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 34567999999999887776 566788888899666631 59999999999994 5555689999988887743
Q ss_pred -HH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 200 -QS-----HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 200 -~~-----~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
.. ....++|+.+|.++.+++| +.+.=.|++.++...|...+..
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccch
Confidence 21 2347799999999999996 6778889999998888754443
No 235
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.22 E-value=0.0014 Score=61.54 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=71.0
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
..|++++|++.|-+||+++|.....+...+.++.. +++...|+..+..|++++|+...-+-..+.+...+|+++++..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 46999999999999999999999999999988887 9999999999999999999988888888888888888887764
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.19 E-value=0.04 Score=50.01 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVL 226 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~ 226 (270)
+..|++-|...+. .|++++|+..|++.....|..+ .++..++...++ .+++++|+.++++-+.++|.+ ..++
T Consensus 34 ~~~LY~~g~~~L~-~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 34 ASELYNEGLTELQ-KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 4445555545554 6999999999999999998654 678888888888 999999999999999999876 4566
Q ss_pred HHHHHHHHHc
Q 024243 227 ASHAHFLWDA 236 (270)
Q Consensus 227 ~~la~il~~~ 236 (270)
+..|..++..
T Consensus 112 YlkgLs~~~~ 121 (254)
T COG4105 112 YLKGLSYFFQ 121 (254)
T ss_pred HHHHHHHhcc
Confidence 6677766554
No 237
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.19 E-value=0.051 Score=41.55 Aligned_cols=67 Identities=12% Similarity=0.002 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcH
Q 024243 173 AEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD--CYVLASHAHFLWDADEDE 240 (270)
Q Consensus 173 A~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~--~~~~~~la~il~~~Ge~e 240 (270)
.+..++++++.+|+|.++.+.+|..+.. .|++++|++.+..+++.+++. ..+.-.+-.++-.+|..+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4567899999999999999999977777 999999999999999998754 677777777777777643
No 238
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.14 E-value=0.098 Score=44.38 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=77.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.++.+++...+..+--+.|+.+.+-..-| .++.++|+|.+|+.+++.+.+..|..+.+-..++.+++. +++.. =..+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~-~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~-Wr~~ 99 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDG-WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS-WRRY 99 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHH-HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH-HHHH
Confidence 46888999999999999999999988888 555568999999999999999889999988889966665 77654 2234
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
-+.+++..+ ++.+......++-..+.
T Consensus 100 A~evle~~~-d~~a~~Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 100 ADEVLESGA-DPDARALVRALLARADL 125 (160)
T ss_pred HHHHHhcCC-ChHHHHHHHHHHHhccc
Confidence 555666655 56666666555544433
No 239
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.07 E-value=0.033 Score=38.58 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.++.+|...+ ..|+|++|.++++++|+++|+|.++.....
T Consensus 3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3455554455 367777777777777777777777665444
No 240
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.06 E-value=0.035 Score=38.46 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
+.++.+|..+++ +|+|++|..+.+.+|++.|++.++......+-
T Consensus 2 d~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 456778866777 99999999999999999999999887766554
No 241
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.05 E-value=0.012 Score=36.90 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 024243 156 LSNYARFLKEARGDLLKAEEYCARAI 181 (270)
Q Consensus 156 l~~lA~~l~~~~Gd~~eA~e~~ekAI 181 (270)
+.++|.++. ..|++++|+++|+++|
T Consensus 2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYR-QQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 455664444 3566666666666643
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.03 E-value=0.094 Score=42.49 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=55.8
Q ss_pred hCCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024243 167 RGDLLKAEEYCARAILMSPN----------------------DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCY 224 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~----------------------n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~ 224 (270)
.++...+++.+++|+.+-.. ...++..++..+.. .|++++|+.++++++..+|-+..
T Consensus 19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~E~ 97 (146)
T PF03704_consen 19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE-AGDYEEALRLLQRALALDPYDEE 97 (146)
T ss_dssp TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-HH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHH
Confidence 46777777777777766521 12234445544555 89999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcHHHHh
Q 024243 225 VLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 225 ~~~~la~il~~~Ge~eea~~ 244 (270)
++..+-.+|...|+..++..
T Consensus 98 ~~~~lm~~~~~~g~~~~A~~ 117 (146)
T PF03704_consen 98 AYRLLMRALAAQGRRAEALR 117 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999988874
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.93 E-value=0.018 Score=34.42 Aligned_cols=33 Identities=33% Similarity=0.316 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 024243 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPND 187 (270)
Q Consensus 154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n 187 (270)
++++.+|.++.. .|++++|++.|+++++..|++
T Consensus 1 ~a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence 367889977764 799999999999999999974
No 244
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.93 E-value=0.013 Score=33.04 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~ 186 (270)
++..+|..+.. .+++++|+..|+++++++|+
T Consensus 3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLK-LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence 34455544442 45555555555555555553
No 245
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.91 E-value=0.016 Score=32.59 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (270)
Q Consensus 189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~ 222 (270)
.++..+|.+++. ++++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCC
Confidence 467889977777 999999999999999998863
No 246
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.89 E-value=0.2 Score=44.40 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHhhCC-------HHHHHHHHHHHHHhCCC------CHHHH
Q 024243 132 NHGNNSTDLYYQKMIQA----DPRN---PLLLSNYARFLKEARGD-------LLKAEEYCARAILMSPN------DGNVL 191 (270)
Q Consensus 132 ~gd~~eA~~~y~kALel----dP~n---~~al~~lA~~l~~~~Gd-------~~eA~e~~ekAIeldP~------n~~al 191 (270)
...+++|++.|.-|+-. ..++ +..+..+| ++++..++ +.+|.+.|++|++.... ...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlA-WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLA-WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 45889999999887753 2222 45555667 66666677 45678888888876632 24677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 024243 192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDD-CYVLASHAHFLWD 235 (270)
Q Consensus 192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~-~~~~~~la~il~~ 235 (270)
+.+|.+..+ .|++++|+.+|.+++...-.. +..+..+|+=.|+
T Consensus 169 YLigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 169 YLIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 788877777 999999999999999764432 3466666665554
No 247
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.12 Score=51.87 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=86.7
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCC
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY------GDLIWQSHKD 204 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~l------A~ll~~~~g~ 204 (270)
..++...+....+.++..||++..++.+++..+-.....+.-+....+.+.+..|+|.+++..+ +.+.-. +++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 157 (620)
T COG3914 79 PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGR 157 (620)
T ss_pred ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hcc
Confidence 3456678888999999999999999999998777655566777778888999999999988777 644444 889
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
..++..++++++++.|+++.+...+.......-.
T Consensus 158 ~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 158 TAEAELALERAVDLLPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence 9999999999999999998887777666444333
No 248
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.79 E-value=0.16 Score=42.15 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhh--CCHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243 153 PLLLSNYARFLKEAR--GDLLKAEEYCARAIL-MSP-NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS 228 (270)
Q Consensus 153 ~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIe-ldP-~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~ 228 (270)
....++||.++-... .|..+.+.+++..++ -.| ...+.++.+|.-+++ .++|++++.|++..++..|++.++...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 455668886665432 477889999999997 455 455788888866787 999999999999999999999998877
Q ss_pred HHHHHHH
Q 024243 229 HAHFLWD 235 (270)
Q Consensus 229 la~il~~ 235 (270)
.-.+.-+
T Consensus 111 k~~ied~ 117 (149)
T KOG3364|consen 111 KETIEDK 117 (149)
T ss_pred HHHHHHH
Confidence 6666544
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.77 E-value=0.02 Score=35.88 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 190 VLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 190 al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
+|.++|.++.. +|++++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQ-QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 47889977777 99999999999996644
No 250
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.65 E-value=0.02 Score=51.51 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-VLSMYG 195 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~-al~~lA 195 (270)
.+|.+.+.+.|.+++++.|.....|+.+| .+.++.|+++.|.+.|++.+++||.+.. +-..++
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g-~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa 71 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLG-EYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLA 71 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcc-hhhhhcccHHHHHHHHHHHHcCCcccccchhhhHH
Confidence 46889999999999999999999999999 6666789999999999999999996643 333444
No 251
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.58 E-value=0.15 Score=49.18 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=84.5
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh---CCCCHH---HHHHHHHHHHHHcCC
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM---SPNDGN---VLSMYGDLIWQSHKD 204 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel---dP~n~~---al~~lA~ll~~~~g~ 204 (270)
..|+.+.|+.|-+++.+..|.-++++...-...+. .||++.|+++.+...+. .++-.+ +...-+...-...-+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 35788999999999999999999888766656664 69999999987655433 332221 111111112222567
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
...|...-.+++++.|+....-...+..|++.|+..++...+|
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 7889999999999999998888889999999999888876544
No 252
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.50 E-value=0.2 Score=48.05 Aligned_cols=123 Identities=14% Similarity=0.045 Sum_probs=84.9
Q ss_pred CCChHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhh--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243 132 NHGNNSTDLYYQK-MIQADPRNPLLLSNYARFLKEAR--------GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (270)
Q Consensus 132 ~gd~~eA~~~y~k-ALeldP~n~~al~~lA~~l~~~~--------Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~ 202 (270)
.|+.++|+..+.. +....+.+++.+..+|+++...- ...++|++.|+++.+++| +...-.|++.++.. .
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~-~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLML-A 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHH-c
Confidence 4789999999999 55567788999999998775421 246899999999999996 55556688866665 5
Q ss_pred CCHHHHHHHHHHHH--------Hh----CCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCCCCC
Q 024243 203 KDASRAESYFDQAV--------KA----APDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPSYNF 256 (270)
Q Consensus 203 g~~e~A~~~~ekAL--------~~----~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~p~f 256 (270)
|+..+....+++.. +. .-.+-.....+..+..-.++.+++.+..+. ....||.|
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 54332221111111 11 224556667777788888999999887776 55556665
No 253
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.44 E-value=0.019 Score=51.66 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=51.3
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC 223 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~ 223 (270)
.+|.+-|.++|.+|+++-|+....|+.++. +-++.|+++.|...|++.++++|++.
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~-~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGE-YTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcch-hhhhcccHHHHHHHHHHHHcCCcccc
Confidence 699999999999999999999999999995 44449999999999999999999764
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.40 E-value=0.067 Score=51.14 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=82.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC----------HHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSPND----------GNVLSMYG 195 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n----------~~al~~lA 195 (270)
.+.+++++.+|++|++..-++. .+...++.++. ...|+++|.-+..+|.++--+. ..+++.++
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 4689999999999999854432 56667885554 5799999999999998876432 24567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCcHHH
Q 024243 196 DLIWQSHKDASRAESYFDQAVKAA------PDDCYVLASHAHFLWDADEDEED 242 (270)
Q Consensus 196 ~ll~~~~g~~e~A~~~~ekAL~~~------P~~~~~~~~la~il~~~Ge~eea 242 (270)
+.++.+|..-+|.++.+.|.++. +-+..-+.-+|.||...|+.+.+
T Consensus 214 -ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 214 -VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA 265 (518)
T ss_pred -HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence 66677999999999999988763 23455667788899999886654
No 255
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.05 Score=51.24 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=74.4
Q ss_pred HhCCCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024243 147 QADPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (270)
Q Consensus 147 eldP~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~ 221 (270)
+-+|+. +.-+-.=|+.++. ..+|..|++.|.+.|+.+-.|+ -.|.+.|-+-+. .|+|-.|+....+|+.++|.
T Consensus 74 E~ep~E~Aen~KeeGN~~fK-~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~ 151 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFK-EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPT 151 (390)
T ss_pred cCChHHHHHHHHHHhHHHHH-hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcc
Confidence 334443 3334456777774 6899999999999999886544 457777756566 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCcHHH
Q 024243 222 DCYVLASHAHFLWDADEDEED 242 (270)
Q Consensus 222 ~~~~~~~la~il~~~Ge~eea 242 (270)
+..+++.-+.+++.+.+.+++
T Consensus 152 h~Ka~~R~Akc~~eLe~~~~a 172 (390)
T KOG0551|consen 152 HLKAYIRGAKCLLELERFAEA 172 (390)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999984444
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.24 E-value=0.19 Score=49.71 Aligned_cols=98 Identities=14% Similarity=0.047 Sum_probs=70.3
Q ss_pred cCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCH--
Q 024243 131 NNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPNDGNVLSMYGDLIWQSHKDA-- 205 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel-dP~n~~al~~lA~ll~~~~g~~-- 205 (270)
+.|+.++|++.++.+++.+|. +..++.++..++.+ .+.|.++..++.|-=++ -|+.+...+.-|-+.++..++.
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs 349 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFS 349 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccC
Confidence 347889999999999988776 45677788878886 68999998888874322 2666777777775444433331
Q ss_pred -------------HHHHHHHHHHHHhCCCCHHHHHHH
Q 024243 206 -------------SRAESYFDQAVKAAPDDCYVLASH 229 (270)
Q Consensus 206 -------------e~A~~~~ekAL~~~P~~~~~~~~l 229 (270)
..|++.+.+|++.||-.+..+..+
T Consensus 350 ~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 350 PEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred chhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 246788999999999777666554
No 257
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.21 E-value=0.18 Score=51.33 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=97.1
Q ss_pred cccccccCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------------
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------------- 187 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeldP~----n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------------- 187 (270)
-+.+|+.+++.+.|...|+++++.+=. -+.+|.+.|..-. ...+++.|.++.++|... |.+
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl-rh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL-RHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHH
Confidence 357999999999999999999987532 3788999995555 468999999999999864 433
Q ss_pred ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 188 ------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 188 ------~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
..+|..|+++.-. .|-++.-...|++.+++---.|++-.++|.++.....++++=+.-|.
T Consensus 471 ~rlhrSlkiWs~y~DleEs-~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEES-LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHHHhHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3467888865555 89999999999999999988999999999999776666666554343
No 258
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.19 E-value=0.51 Score=44.09 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH--KDASRAESY 211 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~--g~~e~A~~~ 211 (270)
-.+.-+.+|++||+.+|++...+..|-.... ...+.++..+.+++++..+|++...|..|-....... -.+.+....
T Consensus 46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3567789999999999999999988885555 4578899999999999999999999988885544322 246678888
Q ss_pred HHHHHHhCCC------------------CHHHHHHHHHHHHHcCCcHHHHh
Q 024243 212 FDQAVKAAPD------------------DCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 212 ~ekAL~~~P~------------------~~~~~~~la~il~~~Ge~eea~~ 244 (270)
|.++++.-.. -..++..+..++.+.|..+.|-.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 8887765221 13466777888889999888763
No 259
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.17 E-value=0.49 Score=42.73 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 024243 134 GNNSTDLYYQKMIQADPRN-PLLLSNYARFLKEARG--------DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--- 201 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n-~~al~~lA~~l~~~~G--------d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~--- 201 (270)
|..+|..+|+++.+..-.. ..+...++..+. .| +..+|...|.+|-... +..+...++.++..-
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 7788888888888773333 344556663333 23 3347888888887765 777888888555432
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243 202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD 237 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~G 237 (270)
..++.+|..+|.+|.+... ...++.++ +++..|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2377888888888888766 77777777 666666
No 260
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.13 E-value=0.2 Score=52.38 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=78.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
+.|..++|..+++..-..-+++...+.-+-.++- ..+++++|..+|++++..+|+ .+.++.+=..+.+ .+.|.+-..
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~qQk 131 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKKQQK 131 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHHHHH
Confidence 3467789998888888888888888777774544 589999999999999999998 7766666645555 777776666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
.--+..+..|++++.++....+++.
T Consensus 132 aa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 132 AALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHhCCcccchHHHHHHHHHH
Confidence 6666667889988877776666554
No 261
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.12 E-value=0.027 Score=55.46 Aligned_cols=106 Identities=12% Similarity=0.018 Sum_probs=80.7
Q ss_pred cCCChHHHHHHHHH-HHHhCCC--------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-h--------C--------
Q 024243 131 NNHGNNSTDLYYQK-MIQADPR--------NPLLLSNYARFLKEARGDLLKAEEYCARAIL-M--------S-------- 184 (270)
Q Consensus 131 ~~gd~~eA~~~y~k-ALeldP~--------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe-l--------d-------- 184 (270)
..|++.+|.+.+.. -+...|. .-.+|+++| +++...+.|.-+..+|.+|++ . .
T Consensus 252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG-cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG-CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HhcchHHHHHHHHhcccccccCccccchhhhheeecCcc-eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 34777777777644 2344454 235678999 555567999999999999996 1 1
Q ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 185 -PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 185 -P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
-...+++++.|..++. .|+.-.|.++|.+++...-.+|..|..++.+.+..-+
T Consensus 331 ~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 331 QNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred cccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 2356788999955555 9999999999999999999999999999987766543
No 262
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=0.26 Score=43.22 Aligned_cols=104 Identities=19% Similarity=0.147 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHH
Q 024243 137 STDLYYQKMIQADPRNPL---LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN----VLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 137 eA~~~y~kALeldP~n~~---al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~----al~~lA~ll~~~~g~~e~A~ 209 (270)
+.....++....++.+.. +...+|....+ .+++++|+..++.++. .|.|.. +-.++|.+.++ ++++++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve-~~~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q-~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVE-ANNLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQ-QKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHH-hhhHHHHH
Confidence 667777777777766643 33456766665 6888888888888875 333332 33566767777 78888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
..++......- ...+....|.++...|+.+++..
T Consensus 147 ~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 147 KTLDTIKEESW-AAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred HHHhccccccH-HHHHHHHhhhHHHHcCchHHHHH
Confidence 77766543211 24456667888888888777764
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.06 E-value=1.9 Score=36.65 Aligned_cols=73 Identities=21% Similarity=0.098 Sum_probs=67.8
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADED 239 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ 239 (270)
..++.+.+..++...-.+.|+.+++-..-++++.. .|++.+|+.+|+.+.+..|..+.+...++.+++.+++.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 35899999999999999999999999999988887 99999999999999999999999999999999999874
No 264
>PRK10941 hypothetical protein; Provisional
Probab=95.02 E-value=0.13 Score=47.08 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=58.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~l 197 (270)
+.++++.|.++.+.++.++|+++.-+...| .++...|.+..|..-++..|+..|+++.+-.....+
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRG-ll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRG-LIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 458999999999999999999999999999 444468999999999999999999999887655533
No 265
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.98 E-value=0.059 Score=54.20 Aligned_cols=120 Identities=14% Similarity=0.092 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG--NVLSMYGDLIWQSHKDASRAESYFD 213 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~--~al~~lA~ll~~~~g~~e~A~~~~e 213 (270)
+..-...-.+++.+|.+..++ +++.++.+.+|+..+|..++..|+..-|... .++..+|.++.+ .|...+|--++.
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-aG~sadA~iILh 273 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHR-AGFSADAAVILH 273 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHH-cccccchhheee
Confidence 445566778889999988776 5566898889999999999999999887544 367788988888 999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCC
Q 024243 214 QAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQ 257 (270)
Q Consensus 214 kAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~ 257 (270)
.|+...|....-++.++.++..+++++..-..-+..+...|.|.
T Consensus 274 AA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 274 AALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred hhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 99999998777799999999999987754433223344455553
No 266
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.17 Score=47.46 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=69.6
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
..+|..|++++.--.+.+|.+...+..+|.++|. ..+|..|.++|++...+.|......+..+.-+++.+.+.++-
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 5789999999999999999999999999999998 899999999999999999998888888888888888777665
No 267
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.85 E-value=0.49 Score=46.89 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~ 199 (270)
+.+.+-...|.+++..+|+++.+|..-|...++..-+++.|..++.++|+.+|+++..|..+=.+-.
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence 4477888999999999999999999999899986556999999999999999999999977765533
No 268
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.85 E-value=0.53 Score=42.47 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=73.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcC-----
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA---RGDLLKAEEYCARAILMSPND-GNVLSMYGDLIWQSHK----- 203 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~---~Gd~~eA~e~~ekAIeldP~n-~~al~~lA~ll~~~~g----- 203 (270)
.+..+|..+|+ ...+..++.+.++||..+..- ..|+.+|..+|++|.+..-.. ..+.+.++.++.. +
T Consensus 91 ~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~--g~~~~~ 166 (292)
T COG0790 91 RDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS--GLQALA 166 (292)
T ss_pred ccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc--Chhhhc
Confidence 46899999999 566778889999999666531 238999999999999865433 3447788855443 4
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 204 ---DASRAESYFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 204 ---~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
+...|..+|.++.... +..+++.++.+|..
T Consensus 167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 3347999999998876 78888999977754
No 269
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.36 Score=46.62 Aligned_cols=103 Identities=9% Similarity=0.100 Sum_probs=85.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD---AS 206 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~---~e 206 (270)
+.-.++-+.+...+++.+|+...+|+-...++.. .+ ++.+-+++|+++++.||.|-.+|...-.++-+.... ..
T Consensus 88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 3467888999999999999999999999966653 43 589999999999999999999997777665553444 56
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
+-+++..+++..++.|-.+|-....++..
T Consensus 167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred hHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 77889999999999999998888877763
No 270
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.79 E-value=0.2 Score=50.87 Aligned_cols=90 Identities=24% Similarity=0.339 Sum_probs=75.6
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH--cCCH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQS--HKDA 205 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~--~g~~ 205 (270)
+.-|=++...+.|++++++.=-.|....|||.+|-+ ..-+++|-+.|+|-|.+. |+-.++|..|-...... -.+.
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 334788999999999999999999999999966664 688999999999999998 57778888877554432 3468
Q ss_pred HHHHHHHHHHHHhCC
Q 024243 206 SRAESYFDQAVKAAP 220 (270)
Q Consensus 206 e~A~~~~ekAL~~~P 220 (270)
++|..+|++||+..|
T Consensus 567 EraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 567 ERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHhcCC
Confidence 899999999999988
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.70 E-value=0.12 Score=50.96 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=69.1
Q ss_pred cccccccCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeldP~----n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~ 200 (270)
.++.+...|+.++|+..|++++..... ....++.++.++. .+.+|++|.+++.+.++.+.-....|..++.+++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 345556679999999999998853222 2455667885555 58999999999999999887655555555556665
Q ss_pred HcCCH-------HHHHHHHHHHHHh
Q 024243 201 SHKDA-------SRAESYFDQAVKA 218 (270)
Q Consensus 201 ~~g~~-------e~A~~~~ekAL~~ 218 (270)
..++. ++|..+|.++-..
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHH
Confidence 58888 8888888877654
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.56 E-value=0.67 Score=42.45 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=82.2
Q ss_pred cCCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-CC-------------------
Q 024243 131 NNHGNNSTDLYYQKMIQADP----RNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-PN------------------- 186 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP----~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-P~------------------- 186 (270)
..|.++.|..++.++...++ ..+.+....+..+.. .|+..+|+..++..++.. ..
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 45799999999999988763 257788889988885 799999999999888821 11
Q ss_pred --------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 187 --------------DGNVLSMYGDLIWQSH------KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 187 --------------n~~al~~lA~ll~~~~------g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
-+.++..+|..... . ++++++...|.+|++.+|+...+++.+|.++...=+
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 12344455544444 4 888999999999999999999999999998877644
No 273
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.46 E-value=0.14 Score=45.65 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 173 AEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 173 A~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
|+.+|.+|+.+.|+++..+..+|.+... .++.-.|+-+|-|++-..-..+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4556666666666666666666633333 5666666666666664443345566666665555
No 274
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.37 E-value=0.37 Score=46.97 Aligned_cols=113 Identities=6% Similarity=0.035 Sum_probs=82.7
Q ss_pred cccccCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC------CCHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQAD------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP------NDGNVLSMY 194 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeld------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP------~n~~al~~l 194 (270)
++|--.++++.|+++|++.+.+. .-.+...+.+|+.++. ..++.+|+.|+++-+.+-. ....+++.+
T Consensus 243 N~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL 321 (639)
T KOG1130|consen 243 NCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSL 321 (639)
T ss_pred hhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44445689999999999976552 2235667789988885 7999999999988776653 345577788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCcHH
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAA-----PD-DCYVLASHAHFLWDADEDEE 241 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~-----P~-~~~~~~~la~il~~~Ge~ee 241 (270)
|+.+-. .|..++|+.+.++.+++. +. .-.+..++......+|..+-
T Consensus 322 gna~~a-lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 322 GNAFNA-LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHh-hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 855554 999999999888877652 22 34466777888888887544
No 275
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.14 E-value=1 Score=39.62 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=58.2
Q ss_pred hCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcH
Q 024243 167 RGDLLKAEEYCARAILMSP--NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD----DCYVLASHAHFLWDADEDE 240 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP--~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~----~~~~~~~la~il~~~Ge~e 240 (270)
+-.-++|...|.++-. .| ++++..+.+| .+|. ..+.++|+.++.++|++... |+.++..++.+++.+++++
T Consensus 119 r~~d~~A~~~fL~~E~-~~~l~t~elq~aLA-tyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEG-TPELETAELQYALA-TYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred ccCcHHHHHHHHHHcC-CCCCCCHHHHHHHH-HHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3344566666655433 33 7899999999 5665 79999999999999998654 5999999999999999988
Q ss_pred HHH
Q 024243 241 EDE 243 (270)
Q Consensus 241 ea~ 243 (270)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 276
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.13 E-value=0.66 Score=39.01 Aligned_cols=70 Identities=17% Similarity=0.103 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 168 Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
.+.++++.++...--+.|+.+++-..-++++.. .|++.+|+.+|+...+..+..+.....++.+++.+|+
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 455555555555555555555555555544444 5555555555555555555445555555555555554
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.10 E-value=0.46 Score=47.73 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHh---hC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243 132 NHGNNSTDLYYQKMIQ-----ADPRNPLLLSNYARFLKEA---RG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (270)
Q Consensus 132 ~gd~~eA~~~y~kALe-----ldP~n~~al~~lA~~l~~~---~G-d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~ 202 (270)
..|.+.|+.+|+.+.+ ..-.++.+.+.+|.++..- .. |+.+|..+|.+|-+.. ++++.+.+|.++....
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence 4688999999988877 1122555667777555531 12 6777888888887644 4556666775444423
Q ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 203 --KDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 203 --g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
.++.+|..+|..|.+. .+..+++.++.+|.
T Consensus 340 ~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKA--GHILAIYRLALCYE 371 (552)
T ss_pred ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence 3466788888877664 35666666766553
No 278
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.99 E-value=0.1 Score=51.96 Aligned_cols=88 Identities=15% Similarity=-0.047 Sum_probs=75.8
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~--~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
.+.+..|+..|.++++.-|.....+-++|.++.+. .++.-.|+.....|++++|-...+++.++.++..++++.++.+
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 36678899999999999999999999999766542 3566688888899999999999999999999999999999998
Q ss_pred ccCCCCCCCC
Q 024243 245 VGEEPAPPSY 254 (270)
Q Consensus 245 ~~e~~~~~~p 254 (270)
....++..+|
T Consensus 467 ~~~alq~~~P 476 (758)
T KOG1310|consen 467 CHWALQMSFP 476 (758)
T ss_pred hHHHHhhcCc
Confidence 7666777776
No 279
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.24 Score=49.68 Aligned_cols=114 Identities=15% Similarity=0.004 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNY--ARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~l--A~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.-.-++..|..-+..+|.++.++... . .+....++...|......++..||++..+..+++..+-.....+.-+..+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~ls-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLS-ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHH-hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33446666777777899998885443 4 33334688889999999999999999999999997766634444455556
Q ss_pred HHHHHHhCCCCHHHHHHH------HHHHHHcCCcHHHHhccCC
Q 024243 212 FDQAVKAAPDDCYVLASH------AHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~l------a~il~~~Ge~eea~~~~e~ 248 (270)
.+.+....|++..+...+ +..+..+++..+++..++.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 167 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALER 167 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 666999999999988888 7777777877777765444
No 280
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.95 E-value=0.14 Score=31.84 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAILM 183 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIel 183 (270)
++.++|.++.. +|++++|++++++++++
T Consensus 4 ~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 34445533332 45555555555555443
No 281
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.92 E-value=0.16 Score=31.57 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243 188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (270)
Q Consensus 188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~ 219 (270)
..++.++|.++.. +|++++|+.++++++++.
T Consensus 2 a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRA-QGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hhhcchhhHHHHHHHHHH
Confidence 3578899977776 999999999999999873
No 282
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.86 E-value=0.093 Score=51.81 Aligned_cols=117 Identities=9% Similarity=0.010 Sum_probs=91.3
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA-ILMSPN--------DGNVLSMYGDL 197 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA-IeldP~--------n~~al~~lA~l 197 (270)
++|-+..+...+....+.+..+..+.+.++...+++.|. .|++.+|++++... |...|. ....|.++|-+
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~-~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYA-HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH-hcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 444455566666777777777778889999999988885 79999999988665 666665 23346788866
Q ss_pred HHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 198 IWQSHKDASRAESYFDQAVKA------------------APDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 198 l~~~~g~~e~A~~~~ekAL~~------------------~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.++ ++.|+-+..+|.+|++. ..+...++|+.|..|...|+.-+|-++
T Consensus 293 h~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC 357 (696)
T KOG2471|consen 293 HYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC 357 (696)
T ss_pred eee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence 677 99999999999999961 224678999999999999998888765
No 283
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.81 E-value=1.2 Score=39.15 Aligned_cols=86 Identities=12% Similarity=0.146 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-n~~al~~lA~ll~~~~g~~e~ 207 (270)
.+++++|+..++.++...-+. ..+-.++|+++.+ +|.+++|+..+..... ++ .+......|+++.. .|+-++
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~-kg~k~~ 177 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKE--ESWAAIVAELRGDILLA-KGDKQE 177 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHH-cCchHH
Confidence 468888888888888664443 3445577877775 6888888887765443 22 22344566766666 888888
Q ss_pred HHHHHHHHHHhCCC
Q 024243 208 AESYFDQAVKAAPD 221 (270)
Q Consensus 208 A~~~~ekAL~~~P~ 221 (270)
|...|+++++.+++
T Consensus 178 Ar~ay~kAl~~~~s 191 (207)
T COG2976 178 ARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHccCC
Confidence 88888888888753
No 284
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.79 E-value=0.35 Score=38.60 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=40.8
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhh---CC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPL---LLSNYARFLKEAR---GD-------LLKAEEYCARAILMSPNDGNVLSMYGDL 197 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~---al~~lA~~l~~~~---Gd-------~~eA~e~~ekAIeldP~n~~al~~lA~l 197 (270)
..|+.-+|++..+.++..++++.. .+..-|.+++... .| .--|++.|.+++.+.|+.+..++.+|.-
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 345666677777776666666553 2222232221110 11 1235555555655555555555555533
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 024243 198 IWQSHKDASRAESYFDQAVK 217 (270)
Q Consensus 198 l~~~~g~~e~A~~~~ekAL~ 217 (270)
+-. ...|++++...+++|.
T Consensus 88 l~s-~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 88 LGS-VKYYKKAVKKAKRGLS 106 (111)
T ss_pred hhh-HHHHHHHHHHHHHHhc
Confidence 222 3334444444444443
No 285
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=0.38 Score=44.09 Aligned_cols=68 Identities=19% Similarity=0.054 Sum_probs=59.6
Q ss_pred HhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 165 EARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 165 ~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
...++++.|....++.+.++|+++.-+...|.+|.+ ++.+.-|++.++..++..|+++.+......+.
T Consensus 192 ~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 192 LRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 357899999999999999999999999999966666 99999999999999999999887766655544
No 286
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.15 E-value=0.2 Score=48.02 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=67.2
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC------CCCHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN----------PLLLSNYARFLKEARGDLLKAEEYCARAILMS------PNDGNV 190 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n----------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld------P~n~~a 190 (270)
.+|-+.+|+++|..+..+|+++.... ..+++.++..+. .+|....|.++|+.|.++. |-....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc 248 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQARC 248 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHH
Confidence 34455689999999999999885332 355666774444 6899999999999997765 234445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
+..+|+++-. .|+.+.|-.-|++|...
T Consensus 249 ~~~~aDIyR~-~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 249 LLCFADIYRS-RGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHh-cccHhHHHHHHHHHHHH
Confidence 6677765555 99999999999988765
No 287
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.12 E-value=1.6 Score=43.92 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=94.6
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-PNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-P~n~~al~~lA~ll~~~~g~~e~A 208 (270)
...|+++.....|++.+.---....+|..|++.+.. .|+.+-|...+.++.++- |.-+.+....|.+. ..+|+++.|
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~-~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~-e~~~n~~~A 385 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES-SGDVSLANNVLARACKIHVKKTPIIHLLEARFE-ESNGNFDDA 385 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH-cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH-HhhccHHHH
Confidence 345899999999999999989999999999988875 699999999998888876 66777777777444 448999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
..++++.....|....+-........+.|+.+.+.
T Consensus 386 ~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 386 KVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 99999999888998888888888888888876665
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.05 E-value=2.4 Score=38.62 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=80.0
Q ss_pred cCCChHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHh----C---CCCH------
Q 024243 131 NNHGNNSTDLYYQKMIQAD----PRN----PLLLSNYARFLKEARG-DLLKAEEYCARAILM----S---PNDG------ 188 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeld----P~n----~~al~~lA~~l~~~~G-d~~eA~e~~ekAIel----d---P~n~------ 188 (270)
.+|+++.|..+|.|+-... |+. ...+++.|..++. .+ +++.|...+++|+++ . ...+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3579999999999986654 433 3566677766664 68 999999999999988 2 1211
Q ss_pred -HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 189 -NVLSMYGDLIWQSHKD---ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 189 -~al~~lA~ll~~~~g~---~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
.++..++.+++. .+. +++|..+++.+-...|+.+.++...-.++...++.++.++.+
T Consensus 84 ~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L 144 (278)
T PF08631_consen 84 LSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEIL 144 (278)
T ss_pred HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHH
Confidence 235556655555 444 447788888888888988888866666766667766666554
No 289
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.90 E-value=1.5 Score=44.09 Aligned_cols=103 Identities=11% Similarity=0.012 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---HKDASRA 208 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~---~g~~e~A 208 (270)
++..|..+|.++-+....+ +.+.+|.++..-. .|+.+|.++|.+|.+ -.+..+++.+|.++..- ..+..+|
T Consensus 308 d~~~A~~~~~~aA~~g~~~--a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPD--AQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcCCch--HHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 7899999999988875544 4556774443222 357899999999987 56888999999444321 2378899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHH
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLWDA-DEDEED 242 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~~~-Ge~eea 242 (270)
..+|.++.+.+ ++.+.+.++.++..- +..+.+
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~ 416 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA 416 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence 99999999988 466566665554333 444444
No 290
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.88 E-value=1.7 Score=43.81 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=88.4
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHH---HHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAE---EYCARAILMSPN---DGNVLSMYGDLIWQ 200 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~---e~~ekAIeldP~---n~~al~~lA~ll~~ 200 (270)
++=+.+|+++.|...|++..+.-|+...+-...+.+.++ +|+.+.+. +++...+.--.+ ..-.+..++.+.+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r-~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERR-KGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHH-hcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 344667899999999999999889999888888877775 79998888 444444332222 22345677777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Q 024243 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241 (270)
Q Consensus 201 ~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ee 241 (270)
..++.+.|...+.+++++.|++...+..+-++....+-..+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchh
Confidence 78999999999999999999999999999988887774333
No 291
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.84 E-value=0.45 Score=42.39 Aligned_cols=62 Identities=24% Similarity=0.251 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (270)
Q Consensus 138 A~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~ 200 (270)
|+.+|.+|+.+.|++...++.+| +++...++.-.|+-+|-|++...--.+.+..++..++-.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLA-vl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLA-VLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHH-HHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchh-hhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999 665568999999999999987765568888888855444
No 292
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.83 E-value=0.55 Score=37.48 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=58.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH---cCCH-------HHHHHHHHHHHHhCCCCHHHH
Q 024243 160 ARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQS---HKDA-------SRAESYFDQAVKAAPDDCYVL 226 (270)
Q Consensus 160 A~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---al~~lA~ll~~~---~g~~-------e~A~~~~ekAL~~~P~~~~~~ 226 (270)
|..++. +||+-+|+++.+..|...+++.. .+..-|.+++.. ..+. --+++.|.+++.+.|+.+..+
T Consensus 3 A~~~~~-rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 3 AKDYFA-RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 334553 79999999999999999998774 444455554432 2222 258999999999999998888
Q ss_pred HHHHHHHHHcCCcHHHH
Q 024243 227 ASHAHFLWDADEDEEDE 243 (270)
Q Consensus 227 ~~la~il~~~Ge~eea~ 243 (270)
+.+|.-+--.-.+++.-
T Consensus 82 ~~la~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAV 98 (111)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 88887644333344443
No 293
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.81 E-value=0.3 Score=28.52 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 169 DLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 169 d~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
++++|...|++++...|.+..+|..++
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 455566666666666666666665555
No 294
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.8 Score=42.14 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLL-KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~-eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
.+..+-..++.+.++.+|+|-.+|.-.- ++.+..|+.. .-+++++++|..|..|..+|...-+++.. -+.+++-+.+
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr-~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~-F~~~~~EL~y 169 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRR-VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRF-FKDYEDELAY 169 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHH-HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHH-HhhHHHHHHH
Confidence 5788899999999999999999998776 5555689888 88999999999999999999887766543 4444444333
Q ss_pred HHHHH
Q 024243 212 FDQAV 216 (270)
Q Consensus 212 ~ekAL 216 (270)
..+.|
T Consensus 170 ~~~Ll 174 (318)
T KOG0530|consen 170 ADELL 174 (318)
T ss_pred HHHHH
Confidence 33333
No 295
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.77 E-value=2 Score=42.34 Aligned_cols=113 Identities=10% Similarity=0.023 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHH--HHHHHHhC------------CCCHHHHHHHHHH--
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEY--CARAILMS------------PNDGNVLSMYGDL-- 197 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~--~ekAIeld------------P~n~~al~~lA~l-- 197 (270)
.-++|+..++.+++-.|.+...-+..= ++ ....|.+|... +-+.+.+. -.+.+.-..+++.
T Consensus 395 ~dekalnLLk~il~ft~yD~ec~n~v~--~f-vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 395 CDEKALNLLKLILQFTNYDIECENIVF--LF-VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHHH--HH-HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 458999999999999999986654332 22 23445555442 33333322 2456666666654
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCC
Q 024243 198 IWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSY 254 (270)
Q Consensus 198 l~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p 254 (270)
++. +|+|.++..+-.=..+++| .+.++..+|.+++...+++||=+. ++.+||
T Consensus 472 Lys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~---l~~LP~ 523 (549)
T PF07079_consen 472 LYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEY---LQKLPP 523 (549)
T ss_pred HHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH---HHhCCC
Confidence 455 8999999999999999999 899999999999999999999877 444455
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.33 E-value=0.59 Score=42.40 Aligned_cols=118 Identities=11% Similarity=0.030 Sum_probs=73.6
Q ss_pred cccccccCCChHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH------HH
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQAD-----PRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV------LS 192 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeld-----P~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a------l~ 192 (270)
+++-|...++++.|-..|-++-+.. .++ ...+...++ .+ +..+..+|+.++++||++.-+-... +.
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~ 117 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHI 117 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-Hh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Confidence 3344445566666666666665442 122 223333332 33 3579999999999999998754443 34
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCcHHHHh
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCY------VLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~------~~~~la~il~~~Ge~eea~~ 244 (270)
.+|.++-....++++|+.+|++|-+-...+.. .+...+..-...+++.++..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~ 175 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAID 175 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77876666568999999999999887653321 23333444455567777664
No 297
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.16 E-value=2.1 Score=41.51 Aligned_cols=107 Identities=16% Similarity=0.037 Sum_probs=72.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA-ESY 211 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A-~~~ 211 (270)
-+...|...-.+++++.|+..-+...-++.|+. .|+..|+-.+++.+.+.+| +++++..|- ..+ .|+.... ++-
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~eP-HP~ia~lY~--~ar-~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEP-HPDIALLYV--RAR-SGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCC-ChHHHHHHH--Hhc-CCCcHHHHHHH
Confidence 467788888889999999988777777777774 7999999999999999888 555554333 223 3333221 223
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
..+...+.||+.......+..-...|++..+..
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 334445567777777777776666666655553
No 298
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=2.5 Score=42.05 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHHHcC
Q 024243 134 GNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS---PNDG----NVLSMYGDLIWQSHK 203 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld---P~n~----~al~~lA~ll~~~~g 203 (270)
++..++++++..+.-.|.+ +..+..+|..++....+++.|...+++|..+- |+.. ++...++.++.+...
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence 7889999999999887775 45666889888888899999999999998776 5543 456777877777555
Q ss_pred CHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 204 DASRAESYFDQAVKAAPDD----CYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~----~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
.+..|...+.+|+++.-.. +..++.++.++.-..++.-+-+.+.
T Consensus 104 s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 104 SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 8899999999999997654 5567778888877777777765543
No 299
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.94 E-value=0.77 Score=38.18 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=51.5
Q ss_pred CCChHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQ-ADPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 132 ~gd~~eA~~~y~kALe-ldP~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
..+..+.+..++..++ .+|.. -..++.+|...+ +.++|++|..|++..|+.+|+|.++....-
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4588999999999997 55654 466677776666 479999999999999999999999885544
No 300
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.92 E-value=0.83 Score=45.75 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=60.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 143 QKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 143 ~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
++.++.||.|...|+.|-+- ++. .-+++..+.|++.+...|..+.+|..+....+. .++|+..+.+|.++|.-
T Consensus 10 ~~rie~nP~di~sw~~lire-~qt-~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIRE-AQT-QPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHH-Hcc-CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Confidence 77788899999999888743 333 488999999999999999999999888877776 78899888888888854
No 301
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.43 E-value=1.1 Score=47.17 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARA----------ILMSPN----------DGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekA----------IeldP~----------n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
-..+++||..|- ..+|.+.|+++|+++ |.-+|. +...|.-.| .|++..|+.+.|+.+|
T Consensus 858 r~Tyy~yA~~Le-ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWg-qYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 858 RNTYYNYAKYLE-ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWG-QYLESVGEMDAALSFY 935 (1416)
T ss_pred hhhHHHHHHHHH-hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHH-HHHhcccchHHHHHHH
Confidence 356778896666 479999999999975 333343 334444445 4666689999999888
Q ss_pred HHHHHh---------------------CCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 213 DQAVKA---------------------APDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 213 ekAL~~---------------------~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
..|-+. ...|..+.|.+|+.|-..|+..+|-
T Consensus 936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHH
Confidence 865432 3456677888888888877777665
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.27 E-value=1.6 Score=36.80 Aligned_cols=86 Identities=12% Similarity=-0.002 Sum_probs=67.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
..+.+++...+..+--+.|+.+.+-..-| .++.+.|+|.+|+.+++...+-.+..+.....++.+++. ++|.+ =..+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg-~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~-Wr~~ 99 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDG-WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAE-WHVH 99 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHH-HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChH-HHHH
Confidence 35889999999999999999999987777 555578999999999999999888889888888966666 77754 1233
Q ss_pred HHHHHHhCC
Q 024243 212 FDQAVKAAP 220 (270)
Q Consensus 212 ~ekAL~~~P 220 (270)
-+.+++..+
T Consensus 100 A~~~le~~~ 108 (153)
T TIGR02561 100 ADEVLARDA 108 (153)
T ss_pred HHHHHHhCC
Confidence 444555544
No 303
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.17 E-value=3 Score=39.81 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=77.1
Q ss_pred ccCCChHHHHHHHHHHHHh--------------C------------CCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQA--------------D------------PRNP---LLLSNYARFLKEARGDLLKAEEYCARA 180 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALel--------------d------------P~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekA 180 (270)
..+|+.+.|..++++||=. + +.|- .+++.+...+. .+|-+..|.++|+-.
T Consensus 51 ~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~-~RG~~rTAlE~~KlL 129 (360)
T PF04910_consen 51 RQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG-RRGCWRTALEWCKLL 129 (360)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 4467888888887777521 1 2232 34445554555 479999999999999
Q ss_pred HHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCc
Q 024243 181 ILMSPN-DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD-----DCYVLASHAHFLWDADED 239 (270)
Q Consensus 181 IeldP~-n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~-----~~~~~~~la~il~~~Ge~ 239 (270)
+.+||. |+-....+-+.+..+.++++=-+..++........ -|...+..+.+++..++.
T Consensus 130 lsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 130 LSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred HhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 999998 88766666666666589998777777776552221 346778888999999887
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.09 E-value=1.5 Score=38.56 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~----n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
+++...+.+| .+|. ..|.++|+.++.+++++... |++++..||.+++. +++++.|--
T Consensus 139 ~t~elq~aLA-tyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AYi 199 (203)
T PF11207_consen 139 ETAELQYALA-TYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAYI 199 (203)
T ss_pred CCHHHHHHHH-HHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhhh
Confidence 4688888999 5553 69999999999999999864 58999999977777 999998853
No 305
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.97 E-value=2.3 Score=32.26 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=38.4
Q ss_pred hCCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024243 167 RGDLLKAEEYCARAILMSPN----D-----GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP 220 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~----n-----~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P 220 (270)
.+||.+|.+.+.+....-.. . ..++.++|.+... .|++++|+..++.|+++..
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAR 72 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 58898887777766655431 1 3566777766666 8999999999999987754
No 306
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.78 E-value=0.88 Score=28.83 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHH--HHHHHHhCCCC
Q 024243 155 LLSNYARFLKEARGDLLKAEEY--CARAILMSPND 187 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~--~ekAIeldP~n 187 (270)
.+..+|..++ ..|++++|+++ |+-+..+++.|
T Consensus 3 ~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence 4555664444 35666666666 33666666543
No 307
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=3.5 Score=39.98 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEA-----------RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK- 203 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~-----------~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g- 203 (270)
.+++..=.+.++.+|+...+|+-.--++... +.-+++-+.+.+.+|+.+|+...+|+...+++.++--
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 5667777888899999988886533232221 1245667888999999999999999999998886322
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
++..-+.+.+++++.+|.+...|...-.++-....
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 37889999999999999988877766666655443
No 308
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.52 E-value=0.23 Score=46.65 Aligned_cols=66 Identities=9% Similarity=0.076 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~l 197 (270)
.+.+.+-...|.++++.+|.|.+.|...+.+-+...++++-+...|.++|..||+++.+|..+-.+
T Consensus 120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 356777778888999999999999987555666668999999999999999999999999777654
No 309
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.47 E-value=0.87 Score=26.43 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 203 KDASRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
+++++|..+|++++...|.++.+|..+..+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5688999999999999999999999888654
No 310
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.28 E-value=2.5 Score=44.53 Aligned_cols=118 Identities=18% Similarity=0.270 Sum_probs=75.5
Q ss_pred cccccccCCChHHHHHHHHHHH---------------------HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMI---------------------QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL- 182 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kAL---------------------eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe- 182 (270)
+|.+.++.|+++.|+.+|..|- .....|..+-+.+|+.+ +..|++.+|+.+|.||-.
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHH
Confidence 5667788899999999998763 33466777788888554 468999999999887643
Q ss_pred -----hCC--CCHHHHHHHHHH-----------HHHHcC-CHHHHHHHHHH------HHH-----------------hCC
Q 024243 183 -----MSP--NDGNVLSMYGDL-----------IWQSHK-DASRAESYFDQ------AVK-----------------AAP 220 (270)
Q Consensus 183 -----ldP--~n~~al~~lA~l-----------l~~~~g-~~e~A~~~~ek------AL~-----------------~~P 220 (270)
+-. +..+-+.++|.+ ||+..| ++.+|+.+|.| ||+ ++|
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~ 1076 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA 1076 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC
Confidence 322 222334444422 333344 55666655543 222 245
Q ss_pred C-CHHHHHHHHHHHHHcCCcHHHH
Q 024243 221 D-DCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 221 ~-~~~~~~~la~il~~~Ge~eea~ 243 (270)
. |+..+..-+.++....++++|-
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHH
Confidence 3 6777777777777777777664
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.50 E-value=5.7 Score=33.89 Aligned_cols=91 Identities=18% Similarity=0.097 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH--
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYV-- 225 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~-- 225 (270)
-.++..+|.+++. .||+++|++.|.++.+..-... +.+.++-.+.+. .+++.....++.+|-..-.. +...
T Consensus 36 r~~~~~l~~~~~~-~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 36 RMALEDLADHYCK-IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3677799977774 7999999999999888765433 334445545566 79999999999998766432 3332
Q ss_pred --HHHHHHHHHHcCCcHHHHhc
Q 024243 226 --LASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 226 --~~~la~il~~~Ge~eea~~~ 245 (270)
....|..+...+++.++...
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~ 135 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAEL 135 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHH
Confidence 23345566777889988865
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.33 E-value=4.7 Score=36.83 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 024243 154 LLLSNYARFLKEAR------GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK----------------DASRAESY 211 (270)
Q Consensus 154 ~al~~lA~~l~~~~------Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g----------------~~e~A~~~ 211 (270)
.++..+|.+... . ++.+++.+.|++|++++|+...+|+.+|..+..... -...|+..
T Consensus 253 ~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 331 (352)
T PF02259_consen 253 KAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG 331 (352)
T ss_pred HHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 556667765554 4 889999999999999999999999999976443211 11358888
Q ss_pred HHHHHHhCCC
Q 024243 212 FDQAVKAAPD 221 (270)
Q Consensus 212 ~ekAL~~~P~ 221 (270)
|-+++...++
T Consensus 332 y~~al~~~~~ 341 (352)
T PF02259_consen 332 YLKALSLGSK 341 (352)
T ss_pred HHHHHhhCCC
Confidence 9999998887
No 313
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.59 E-value=8.1 Score=38.98 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 134 d~~eA~~~y~kALeld-P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
+++..-.+|.+++.+. -+-..++.++-+++.. ..=...|...|.+|-+.--.-.+++..-|.+-+...++.+-|..+|
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR-~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR-AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIF 424 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHH-hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHH
Confidence 3555666666666653 2334455566655554 3556677777777776443334666666656555578888888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+-.|+..++.+..-..+..++..++++..+..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHH
Confidence 88888888888888888888888888777763
No 314
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.50 E-value=1.8 Score=32.89 Aligned_cols=53 Identities=13% Similarity=0.052 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 024243 132 NHGNNSTDLYYQKMIQADPR---------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSP 185 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~---------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP 185 (270)
.+++.+|...+.+.+..... ...++.++|.+.. ..|++++|++.++.||++-.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence 57999998888887765322 2466677885555 58999999999999998775
No 315
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.32 E-value=1.9 Score=27.31 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 024243 189 NVLSMYGDLIWQSHKDASRAESYFD--QAVKAAPDD 222 (270)
Q Consensus 189 ~al~~lA~ll~~~~g~~e~A~~~~e--kAL~~~P~~ 222 (270)
+.++.+|..+++ +|++++|+.+|+ -+..+++.|
T Consensus 2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence 567788877777 999999999955 888887754
No 316
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.21 E-value=9.7 Score=34.97 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHH---HHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQA-----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLS---MYGDLIWQS 201 (270)
Q Consensus 133 gd~~eA~~~y~kALel-----dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~---~lA~ll~~~ 201 (270)
..+.++..+|++|..+ .|+-+..-...|.-+.+ .-+.++|+++|++++.+-.++. .++- ..+.++.+
T Consensus 85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr- 162 (308)
T KOG1585|consen 85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR- 162 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh-
Confidence 4677778888888776 34444333344433443 5789999999999988765433 3333 33334555
Q ss_pred cCCHHHHHHHHHHHH----Hh--CCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 202 HKDASRAESYFDQAV----KA--APDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL----~~--~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.++|.+|-..+.|-. +. .+..+..+.....++....++..++..
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc 212 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKC 212 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 788888877777633 22 344444555555555566677777754
No 317
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.17 E-value=2.8 Score=38.77 Aligned_cols=79 Identities=19% Similarity=0.049 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
+..=+...++.++. ....++..++..+. ..++++.+++.+++.|+.+|.+..+|..+-..+++ .|+...|+..|++
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHH
Confidence 44444444444443 23456666775555 57999999999999999999999999888877887 9999999999998
Q ss_pred HHH
Q 024243 215 AVK 217 (270)
Q Consensus 215 AL~ 217 (270)
.-+
T Consensus 213 l~~ 215 (280)
T COG3629 213 LKK 215 (280)
T ss_pred HHH
Confidence 766
No 318
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.87 E-value=2.7 Score=35.92 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=64.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC--CCHHHH---HHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSP--NDGNVL---SMYGDLI 198 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP--~n~~al---~~lA~ll 198 (270)
.+|.+.|++++|++.|.++.+..... ...+.++-++... .+|+.....+..+|-.+-. .+.+.. ..+..++
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~ 122 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA 122 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 56777899999999999988875443 2444455545553 6999999999988865543 333332 2223344
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC
Q 024243 199 WQSHKDASRAESYFDQAVKAAP 220 (270)
Q Consensus 199 ~~~~g~~e~A~~~~ekAL~~~P 220 (270)
....++|.+|-..|-.++....
T Consensus 123 ~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 123 NLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHhchHHHHHHHHHccCcCCC
Confidence 4558999999999988775543
No 319
>PLN03138 Protein TOC75; Provisional
Probab=87.45 E-value=1.2 Score=46.78 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhCCCC
Q 024243 172 KAEEYCARAILMSPND 187 (270)
Q Consensus 172 eA~e~~ekAIeldP~n 187 (270)
..++.+.++|.+.|..
T Consensus 165 ~~e~~l~~~i~~kpG~ 180 (796)
T PLN03138 165 GTEDSFFEMVTLRPGG 180 (796)
T ss_pred chHHHHHHHHhcCCCC
Confidence 3556677777777753
No 320
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.28 E-value=1.1 Score=28.81 Aligned_cols=29 Identities=14% Similarity=0.406 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
+++..+|.+... .++|++|+..|+++|++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 466777777777 78888888888888775
No 321
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.46 E-value=4.8 Score=38.39 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHcCCH
Q 024243 132 NHGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-----DGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-----n~~al~~lA~ll~~~~g~~ 205 (270)
.|-+..|.++.+-.+.+||. ||.....+-..+..+.++|+--+++++........ -+...+..|..++. .++-
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~-l~~~ 194 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR-LEKE 194 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-hcCc
Confidence 36899999999999999999 88888777778877779999888888876653221 12334455534555 5665
Q ss_pred ---------------HHHHHHHHHHHHhCCC
Q 024243 206 ---------------SRAESYFDQAVKAAPD 221 (270)
Q Consensus 206 ---------------e~A~~~~ekAL~~~P~ 221 (270)
++|...+.+|+...|.
T Consensus 195 ~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 195 ESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8999999999998773
No 322
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.45 E-value=2.9 Score=41.22 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=55.5
Q ss_pred HHHHHHHHH--HHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 153 PLLLSNYAR--FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHA 230 (270)
Q Consensus 153 ~~al~~lA~--~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la 230 (270)
.+..+.++. +++ .+|+|.++.-+..-..+++| .+.++..+|.+++. .++|++|-.++.+.-- +.+-.+.....|
T Consensus 460 ~eian~LaDAEyLy-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~LP~-n~~~~dskvqKA 535 (549)
T PF07079_consen 460 EEIANFLADAEYLY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQKLPP-NERMRDSKVQKA 535 (549)
T ss_pred HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHhCCC-chhhHHHHHHHH
Confidence 344444443 355 47999999999999999999 99999999977777 9999999999876522 222233444444
Q ss_pred HHHH
Q 024243 231 HFLW 234 (270)
Q Consensus 231 ~il~ 234 (270)
.+++
T Consensus 536 l~lC 539 (549)
T PF07079_consen 536 LALC 539 (549)
T ss_pred HHHH
Confidence 4443
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.35 E-value=3.6 Score=36.34 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPR--N----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIWQ 200 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~--n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-~al~~lA~ll~~ 200 (270)
=+..|...|+++++.... . ..+++.+| .|....|++++|.+.|.++|..--... ..+..+|.-.|+
T Consensus 140 fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLig-eL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 140 FLRKALEFYEEAYENEDFPIEGMDEATLLYLIG-ELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 356677777777766433 2 46777788 555568999999999999998443222 366676655543
No 324
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.88 E-value=9.7 Score=33.30 Aligned_cols=109 Identities=9% Similarity=0.018 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHH-----HHHHHHHcCCH
Q 024243 133 HGNNSTDLYYQKMIQADPRN--PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY-----GDLIWQSHKDA 205 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n--~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~l-----A~ll~~~~g~~ 205 (270)
+..++|+..|..+-+-.-.+ ..+....|.++. ..|+-..|+.+|..+-...| -|.+...+ +.++.. +|.|
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a-~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD-~gsy 148 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLA-QKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVD-NGSY 148 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhc-cccH
Confidence 56788888887765554443 244445564444 47999999999998876554 34443333 333444 8999
Q ss_pred HHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 206 SRAESYFDQAV-KAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 206 e~A~~~~ekAL-~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
++-....+..- +-+|-...+...++..-|+.|++..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~ 188 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKS 188 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHH
Confidence 98877777643 5566667788889999999999988874
No 325
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=5.8 Score=40.78 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN------VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL 226 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~------al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~ 226 (270)
...|+.-+ -+++ ..+|..+++.|...+..-|.|.. ...+++ ++|....+.++|+++++.|-+.+|.++...
T Consensus 355 ~iLWn~A~-~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~-~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 355 TLLWNTAK-KLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQ-VCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHhhH-HHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 34454444 5554 58999999999999998886543 445666 456569999999999999999999999988
Q ss_pred HHHHHHHHHcCCcHHHHhc
Q 024243 227 ASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 227 ~~la~il~~~Ge~eea~~~ 245 (270)
...-.+....+.-++|-..
T Consensus 432 ~~~~~~~~~E~~Se~AL~~ 450 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTC 450 (872)
T ss_pred HHHHHHHHHhcchHHHHHH
Confidence 8888888888888877643
No 326
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=85.53 E-value=7.4 Score=41.78 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=72.7
Q ss_pred CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh---C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243 132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEAR---G---DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~---G---d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~ 202 (270)
.+.|++|+..|++.-.-.|+- -++.+..|..+.+.. + .+++|+.-|++.-. -|.-+-=|...|.+ |+.+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~ 565 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV-YQRL 565 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH-HHHh
Confidence 478999999999999999886 467777886666532 3 46777777777543 46666667777844 4559
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243 203 KDASRAESYFDQAVKAAPDDCYVLASH 229 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~~P~~~~~~~~l 229 (270)
+++++-+..|.-|++..|.+|.+-...
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (932)
T PRK13184 566 GEYNEEIKSLLLALKRYSQHPEISRLR 592 (932)
T ss_pred hhHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 999999999999999999987654333
No 327
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=85.46 E-value=19 Score=29.57 Aligned_cols=84 Identities=11% Similarity=0.083 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhhCCHHHHHHHHHHHH-------HhCCCCHHHHH-
Q 024243 133 HGNNSTDLYYQKMIQADPRN------------PLLLSNYARFLKEARGDLLKAEEYCARAI-------LMSPNDGNVLS- 192 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n------------~~al~~lA~~l~~~~Gd~~eA~e~~ekAI-------eldP~n~~al~- 192 (270)
+.|++|...++++.+...+- +..+..|+..+.. +|+|++++...++|| +++.+....|+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 57899999999999874332 3455567766664 799987665555554 56666665553
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 193 ---MYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 193 ---~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
..| +.+...|+.++|+..|+++.++
T Consensus 102 aVfsra-~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRA-VALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHH-HHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHhcCChHHHHHHHHHHHHH
Confidence 344 3455589999999999998875
No 328
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=4.8 Score=37.50 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA 215 (270)
+.-...+++.+.. .......-+.-+.. .+++.+|...|..+++.+|++.++...|+.++.. .|+.+.|..++...
T Consensus 120 sqlr~~ld~~~~~---~~e~~~~~~~~~~~-~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~l 194 (304)
T COG3118 120 SQLRQFLDKVLPA---EEEEALAEAKELIE-AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHHHhcCh---HHHHHHHHhhhhhh-ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhC
Confidence 3455555665555 22233334435554 6999999999999999999999999999988888 99999999988775
Q ss_pred HHh
Q 024243 216 VKA 218 (270)
Q Consensus 216 L~~ 218 (270)
=..
T Consensus 195 P~~ 197 (304)
T COG3118 195 PLQ 197 (304)
T ss_pred ccc
Confidence 433
No 329
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.80 E-value=7.4 Score=40.01 Aligned_cols=84 Identities=7% Similarity=-0.041 Sum_probs=66.3
Q ss_pred CChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 133 HGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
.+|..+++.|...+.--|.+ +....+++ +.|....+.++|.++++.|-+.||.++-....+-..... .++-+
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~-~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~Se 445 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQ-VCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcchH
Confidence 68999999999998876665 45556677 444457899999999999999999998877666644444 78889
Q ss_pred HHHHHHHHHHHh
Q 024243 207 RAESYFDQAVKA 218 (270)
Q Consensus 207 ~A~~~~ekAL~~ 218 (270)
+|+.+..+....
T Consensus 446 ~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 446 EALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhh
Confidence 999888876654
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.44 E-value=1.4 Score=25.45 Aligned_cols=21 Identities=33% Similarity=0.235 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHH
Q 024243 156 LSNYARFLKEARGDLLKAEEYC 177 (270)
Q Consensus 156 l~~lA~~l~~~~Gd~~eA~e~~ 177 (270)
...+|..+.. +|++++|...+
T Consensus 4 ~~~la~~~~~-~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLA-QGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHH-cCCHHHHHHHH
Confidence 3444444442 45555554444
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.41 E-value=4.7 Score=37.76 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=29.1
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
.|.+.+|++++++++.+||-+...+..+-.++.. +|+--.|...|++
T Consensus 292 ~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyer 338 (361)
T COG3947 292 AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYER 338 (361)
T ss_pred cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHH
Confidence 5677777777777777777666666555544444 6665555555544
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.90 E-value=1.5 Score=25.21 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 189 NVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 189 ~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
.++..+|.+++. .|++++|+..+++
T Consensus 2 ~a~~~la~~~~~-~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLA-QGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHhC
Confidence 467889988888 9999999998863
No 333
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.38 E-value=12 Score=38.04 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHHcC--C
Q 024243 133 HGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARA-----ILMSPNDGNVLSMYGDLIWQSHK--D 204 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekA-----IeldP~n~~al~~lA~ll~~~~g--~ 204 (270)
|-+..|.++.+-.++++|. ||.+...+-..+.....+|.==+++++.+ |..-|+.+..+ .+|..+...+. .
T Consensus 356 GC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-AlA~f~l~~~~~~~ 434 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-ALARFFLRKNEEDD 434 (665)
T ss_pred CChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-HHHHHHHhcCChhh
Confidence 6677777777777778877 77776666656665556666666665555 33346555443 45544554333 2
Q ss_pred HHHHHHHHHHHHHhCC
Q 024243 205 ASRAESYFDQAVKAAP 220 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P 220 (270)
.+.|...+.+|++..|
T Consensus 435 rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 435 RQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 5567777777777776
No 334
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=83.32 E-value=1.3 Score=42.10 Aligned_cols=111 Identities=12% Similarity=-0.008 Sum_probs=84.0
Q ss_pred cCCChHHHHHHHHHHHHh-C----------CC--------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQA-D----------PR--------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALel-d----------P~--------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al 191 (270)
.+++++.|..-|.++++. + ++ --....+++.+.. ..+++..|...+..+++.++....++
T Consensus 234 kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~tka~ 312 (372)
T KOG0546|consen 234 KKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGL-KVKGRGGARFRTNEALRDERSKTKAH 312 (372)
T ss_pred hhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcc-cccCCCcceeccccccccChhhCcHH
Confidence 346788888888777653 1 11 0123334554444 46899999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
+..+..+.. ..++++|++.+..+....|++..+...+..+-....++.+..
T Consensus 313 ~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~ 363 (372)
T KOG0546|consen 313 YRRGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQ 363 (372)
T ss_pred HHHHhHHHh-hhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHH
Confidence 999955555 999999999999999999999999888887776666655443
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.94 E-value=5.7 Score=40.56 Aligned_cols=114 Identities=16% Similarity=0.054 Sum_probs=71.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 024243 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA-- 218 (270)
Q Consensus 141 ~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~-- 218 (270)
+.++||++.++...- +.++ ...|+++.|.++.. +.++..-|..||.+... .+++..|.++|.+|-..
T Consensus 629 ~~e~AL~~s~D~d~r-Fela----l~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a~d~~~ 697 (794)
T KOG0276|consen 629 MKEQALELSTDPDQR-FELA----LKLGRLDIAFDLAV-----EANSEVKWRQLGDAALS-AGELPLASECFLRARDLGS 697 (794)
T ss_pred chHhhhhcCCChhhh-hhhh----hhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhh-cccchhHHHHHHhhcchhh
Confidence 445555555443322 2332 23466666655432 35677888999987777 99999999999987554
Q ss_pred ------CCCCHHHHHHHH-------------HHHHHcCCcHHHHhccCCCCCCCCC-CCCCCCCChh
Q 024243 219 ------APDDCYVLASHA-------------HFLWDADEDEEDEQVGEEPAPPSYN-FQQRPPLPPH 265 (270)
Q Consensus 219 ------~P~~~~~~~~la-------------~il~~~Ge~eea~~~~e~~~~~~p~-f~~~~~~~~~ 265 (270)
.-.+...+..++ .+|+..|+.++..+.+...+.+|-+ |.....+|++
T Consensus 698 LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~ 764 (794)
T KOG0276|consen 698 LLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQ 764 (794)
T ss_pred hhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHH
Confidence 223444333333 2567788888888777777777765 6655666654
No 336
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.26 E-value=7.8 Score=33.03 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243 170 LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (270)
Q Consensus 170 ~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~ 222 (270)
.+..++..++.++..| ++.++.+++.++.. +|+.++|..+.+++....|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcH
Confidence 4555667788888889 88888899966776 999999999999999999943
No 337
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=81.84 E-value=4.2 Score=37.35 Aligned_cols=63 Identities=11% Similarity=0.069 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD 196 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ 196 (270)
++++.|..+-++.+.++|.++.-+...|-++. ..|.+.-|++-++..++.-|+++.+-...+.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 78999999999999999999999999994554 5899999999999999999999888755553
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.01 E-value=30 Score=31.37 Aligned_cols=62 Identities=21% Similarity=0.127 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
+..++++...+.-++.+|.+......|=..++ +.|+|++|...++-+-++.|++..-...|-
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 57899999999999999999887777765666 579999999999999999998765444444
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.82 E-value=11 Score=28.42 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=36.7
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Q 024243 162 FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLI--WQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 162 ~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll--~~~~g~~e~A~~~~ekAL~~ 218 (270)
-+|. ..+..+|+..+++|++..++..+.+..+|.++ +...|+|.+++.+..+=+++
T Consensus 15 kLY~-~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 15 KLYH-QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHhc-cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3453 57778888888888888887777777776442 22367777777665554443
No 340
>COG4907 Predicted membrane protein [Function unknown]
Probab=80.60 E-value=0.94 Score=44.42 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=6.1
Q ss_pred CCCCCccccc
Q 024243 19 KDSSPVPFTL 28 (270)
Q Consensus 19 ~~~~~~~~~~ 28 (270)
||-+||.|.+
T Consensus 502 ke~~pesI~~ 511 (595)
T COG4907 502 KEAKPESIHL 511 (595)
T ss_pred hhCCCcceeh
Confidence 4567777544
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.83 E-value=25 Score=35.66 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHHcCC
Q 024243 135 NNSTDLYYQKMIQAD-PR---NPLLLSNYARFLKEARGDLLKAEEYCARAILMSP--NDGNV----LSMYGDLIWQSHKD 204 (270)
Q Consensus 135 ~~eA~~~y~kALeld-P~---n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP--~n~~a----l~~lA~ll~~~~g~ 204 (270)
+..|+.+++-+++.. +. .+.+...||..+++...++++|+.+++|++.+.. +..+. ...++.++.+ .+.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~ 115 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNP 115 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCH
Confidence 456777887777422 11 3577888999999888999999999999988884 33333 2344544554 444
Q ss_pred HHHHHHHHHHHHHhCCC
Q 024243 205 ASRAESYFDQAVKAAPD 221 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~ 221 (270)
.. |..+++++++..-.
T Consensus 116 ~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSET 131 (608)
T ss_pred HH-HHHHHHHHHHHHhc
Confidence 44 99999999977655
No 342
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.31 E-value=27 Score=33.61 Aligned_cols=100 Identities=9% Similarity=-0.031 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC-----------------------CCHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP-----------------------NDGNV 190 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP-----------------------~n~~a 190 (270)
+..+-++.-..||++||.++.++..+|.-- .--..+|++++++|++.-. .+..+
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAEEE---a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~ 275 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAEEE---ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLV 275 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhh
Confidence 556778888899999999999998887322 2346778888888776431 11111
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 024243 191 --LSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYVLASHAHFLWDAD 237 (270)
Q Consensus 191 --l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~~~~la~il~~~G 237 (270)
-..+| ++.+++|+..+|+..++...+..|- -..++.++-..+....
T Consensus 276 YIKRRLA-MCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~Q 325 (556)
T KOG3807|consen 276 YIKRRLA-MCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQ 325 (556)
T ss_pred HHHHHHH-HHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 23456 5666699999999999999888872 1234444444444433
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.06 E-value=6.1 Score=29.70 Aligned_cols=56 Identities=9% Similarity=0.031 Sum_probs=40.3
Q ss_pred cccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHH
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA---RGDLLKAEEYCARAIL 182 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~---~Gd~~eA~e~~ekAIe 182 (270)
|-+.|.++ +.++|+..++++++..++.+.-+..+| +++.. -|+|.+++++..+=++
T Consensus 13 GlkLY~~~-~~~~Al~~W~~aL~k~~~~~~rf~~lG-~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 13 GLKLYHQN-ETQQALQKWRKALEKITDREDRFRVLG-YLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHhccc-hHHHHHHHHHHHHhhcCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567554 789999999999999999887777666 43332 4788877776544443
No 344
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=78.28 E-value=29 Score=32.06 Aligned_cols=108 Identities=10% Similarity=0.033 Sum_probs=68.7
Q ss_pred CCChHHHHHHHHHHHHhCCC----CHHHHHHHH-HHHHHhhCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 024243 132 NHGNNSTDLYYQKMIQADPR----NPLLLSNYA-RFLKEARGDL---LKAEEYCARAILMSPNDGNVLSMYGDLIWQS-- 201 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~----n~~al~~lA-~~l~~~~Gd~---~eA~e~~ekAIeldP~n~~al~~lA~ll~~~-- 201 (270)
.++|++-.+.|.+..+...+ ...+..... ..++...... ..-.+.++.-++..|+...++..+|..+...
T Consensus 13 ~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw 92 (277)
T PF13226_consen 13 ARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVHRAW 92 (277)
T ss_pred hCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 46888888888888765433 222111111 0011110111 1356677888999999999998888654331
Q ss_pred -------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243 202 -------------------HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADED 239 (270)
Q Consensus 202 -------------------~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ 239 (270)
..-.++|+.++.+|++++|+...+...+-++-...|+.
T Consensus 93 ~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 93 DIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 11356889999999999999888888887766666653
No 345
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.07 E-value=16 Score=33.19 Aligned_cols=78 Identities=19% Similarity=0.162 Sum_probs=55.4
Q ss_pred hhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH-------HHHHcC-CHHHHHHHHHHHHHh----CC---C-------C
Q 024243 166 ARGDLLKAEEYCARAILMS-PNDGNVLSMYGDL-------IWQSHK-DASRAESYFDQAVKA----AP---D-------D 222 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeld-P~n~~al~~lA~l-------l~~~~g-~~e~A~~~~ekAL~~----~P---~-------~ 222 (270)
.+||++.|..++.|+-.+. .-++.....++.+ ++. .+ +++.|..++++|+++ .. . .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3699999999999996655 4444444444444 444 67 999999999999988 22 1 1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHh
Q 024243 223 CYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 223 ~~~~~~la~il~~~Ge~eea~~ 244 (270)
..++..++.+|...+..+..+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH
Confidence 3467778888888887665543
No 346
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=77.40 E-value=5.1 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
++++|..+|++.+...| ++..|..+|.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 46777777777777776 4556665554
No 347
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=76.91 E-value=5.2 Score=25.65 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC
Q 024243 154 LLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (270)
Q Consensus 154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld 184 (270)
.++..+|.+-.+ ..+|++|++-|++++++.
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 456678866665 699999999999999874
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.65 E-value=47 Score=35.36 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=73.1
Q ss_pred CCChHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPR--N-------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-----VLSMYGDL 197 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~--n-------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~-----al~~lA~l 197 (270)
+..+++|..+..++...-|. . +.+....|.+.. .++++++|+++.+.++..-|.+.. ++...+.+
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 46888888888887665443 1 122223343333 479999999999999999886543 45556644
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC----CCHH--HHHHHHHHHHHcCCcHH
Q 024243 198 IWQSHKDASRAESYFDQAVKAAP----DDCY--VLASHAHFLWDADEDEE 241 (270)
Q Consensus 198 l~~~~g~~e~A~~~~ekAL~~~P----~~~~--~~~~la~il~~~Ge~ee 241 (270)
... .|++++|..+..++.++.- -+-. +....+.++..+|+..-
T Consensus 507 ~~~-~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~ 555 (894)
T COG2909 507 AHI-RGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVAR 555 (894)
T ss_pred HHH-hchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444 8999999999999998843 2222 33344677888884333
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.20 E-value=12 Score=37.47 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA 180 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA 180 (270)
||...|-..+..+|+..|.+|......+ .+....|+|+.|.+.+.-+
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~-~i~~~lg~ye~~~~~~s~~ 349 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRS-VIFSHLGYYEQAYQDISDV 349 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHH-HHHHHhhhHHHHHHHhhch
Confidence 6778888888889999999998887777 5555688888887776443
No 350
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.45 E-value=27 Score=28.06 Aligned_cols=44 Identities=5% Similarity=0.089 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024243 172 KAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDASRAESYFDQAV 216 (270)
Q Consensus 172 eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL 216 (270)
.+.+.|....... -+.+..|...|.++.. .|++++|.++|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhhC
Confidence 6777776666544 4677777777755555 788888888887764
No 351
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=74.30 E-value=8.4 Score=35.61 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM 183 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel 183 (270)
.++++.++..+++.+..+|.+..+|..+-..++ +.|+...|+..|++.-..
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred cccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence 378999999999999999999999998886777 479999999999988764
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.15 E-value=4.7 Score=37.75 Aligned_cols=55 Identities=16% Similarity=0.014 Sum_probs=47.0
Q ss_pred cccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA 180 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA 180 (270)
-.+||...|.+.+|+.+.++++.+||-+...+..+-+.+. ..||--.|++.|++-
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la-~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HhccchhhhhHHHHH
Confidence 4567788899999999999999999999999988886777 479988888877654
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.52 E-value=40 Score=34.25 Aligned_cols=116 Identities=17% Similarity=0.043 Sum_probs=70.0
Q ss_pred cccccCCChHHHHHHHHHHHHhCCC--CHHH----HHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPR--NPLL----LSNYARFLKEARGDLLKAEEYCARAILMSPNDGN----VLSMYGD 196 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~--n~~a----l~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~----al~~lA~ 196 (270)
.+++...+++.|+.++++++.+... ..+. .+.++.++.. .+...|...++++|+.--+... ..+.+-.
T Consensus 68 iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~--~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~ 145 (608)
T PF10345_consen 68 ILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK--TNPKAALKNLDKAIEDSETYGHSAWYYAFRLLK 145 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 4455667999999999999888643 3332 2234544443 3444499999999997765222 2222221
Q ss_pred H-HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH--H--HHHHHHcCCcHHHHh
Q 024243 197 L-IWQSHKDASRAESYFDQAVKAA--PDDCYVLAS--H--AHFLWDADEDEEDEQ 244 (270)
Q Consensus 197 l-l~~~~g~~e~A~~~~ekAL~~~--P~~~~~~~~--l--a~il~~~Ge~eea~~ 244 (270)
+ +....+++..|.+.++...... ..++.+... + +.++...+..++..+
T Consensus 146 ~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~ 200 (608)
T PF10345_consen 146 IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLE 200 (608)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 2 2221379999999999988776 355443332 2 444555554444443
No 354
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=72.88 E-value=7.3 Score=42.69 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=84.7
Q ss_pred hHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCH
Q 024243 135 NNSTDLYYQ-KMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 135 ~~eA~~~y~-kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~n~~al~~lA~ll~~~~g~~ 205 (270)
..+++.++. ..-.+.|.....+..+++..+ ..+++++|+.+.++|.-+. |+....+.+++...+. .++.
T Consensus 954 ~~~slnl~~~v~~~~h~~~~~~~~~La~l~~-~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~ 1031 (1236)
T KOG1839|consen 954 LPESLNLLNNVMGVLHPEVASKYRSLAKLSN-RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNL 1031 (1236)
T ss_pred hhhhhhHHHHhhhhcchhHHHHHHHHHHHHh-hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCc
Confidence 455666777 556679999999999996666 5899999999988876554 5677788888855565 7788
Q ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 206 SRAESYFDQAVKA--------APDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 206 e~A~~~~ekAL~~--------~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
..|+..+.++.+. .|.-.....++..++...++.+.+...++.
T Consensus 1032 ~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1032 SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 8898888888776 455555667778787777888877765444
No 355
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.41 E-value=47 Score=33.40 Aligned_cols=109 Identities=12% Similarity=-0.022 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC-CCHHH--HHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQA---DPR-------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSP-NDGNV--LSMYGDLIW 199 (270)
Q Consensus 133 gd~~eA~~~y~kALel---dP~-------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP-~n~~a--l~~lA~ll~ 199 (270)
+++.+|+.....+.+. .|. .+..+..+|.... ..+.++.|+..|..|.++-. .+-.+ -.++|..|.
T Consensus 337 ~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~-sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 337 GDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH-SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred CCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh-hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 4777777777666553 455 3456666673333 46888999999988887654 23332 345564444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 200 QSHKDASRAESYFDQAVKAAPDD----------CYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 200 ~~~g~~e~A~~~~ekAL~~~P~~----------~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+ +++ +..+|+-.-.+.|.| ..+++-+|.+.+.+++..|+....
T Consensus 416 ~-~~~---~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l 468 (629)
T KOG2300|consen 416 R-IGD---AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFL 468 (629)
T ss_pred H-hcc---HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4 554 444444444555652 456777788888888888887543
No 356
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=72.18 E-value=19 Score=26.65 Aligned_cols=13 Identities=38% Similarity=0.439 Sum_probs=5.1
Q ss_pred HHHHHHHhCCCCH
Q 024243 211 YFDQAVKAAPDDC 223 (270)
Q Consensus 211 ~~ekAL~~~P~~~ 223 (270)
.+.+++...||+.
T Consensus 35 ~L~q~~~~~pD~~ 47 (75)
T cd02682 35 VLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHhCCChH
Confidence 3333344444433
No 357
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=72.01 E-value=41 Score=30.46 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 170 LLKAEEYCARAILM-----SPNDGNV---LSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 170 ~~eA~e~~ekAIel-----dP~n~~a---l~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
.++|.+.|+.|+++ .|.+|-. ..+++.+++..+++.++|..+.++|++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46889999999864 3777753 4567767888899999988777666543
No 358
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=71.96 E-value=3.6 Score=39.08 Aligned_cols=37 Identities=41% Similarity=0.658 Sum_probs=20.4
Q ss_pred ccceeeeccccCCCCCCCCCCCCCCCCCCCCCcccccc
Q 024243 92 CEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWD 129 (270)
Q Consensus 92 ~~~~~~~g~g~~g~gg~~~gg~~~~~g~~~~~~gg~~Y 129 (270)
...|+--||+-+|.||.+.|.++|+|| .|.|+|+.|+
T Consensus 349 ~~~~~eqgg~Rgg~Gg~~gGrGgGRGg-gG~GGGggyq 385 (465)
T KOG3973|consen 349 EEQVLEQGGSRGGSGGNWGGRGGGRGG-GGRGGGGGYQ 385 (465)
T ss_pred ccchhhccCCCCCCCCCCCCCCCCCCC-CCCCCCCCCc
Confidence 345666677666666666665555543 2334444454
No 359
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.62 E-value=7.9 Score=34.68 Aligned_cols=46 Identities=28% Similarity=0.344 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQA-----DPRNPLL---LSNYARFLKEARGDLLKAEEYCARAI 181 (270)
Q Consensus 136 ~eA~~~y~kALel-----dP~n~~a---l~~lA~~l~~~~Gd~~eA~e~~ekAI 181 (270)
+.|...|++|+++ .|.+|.. ..+++.++++..++.++|+++.++|+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4455555555432 4444422 22445455555555555555555544
No 360
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.20 E-value=18 Score=29.98 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (270)
Q Consensus 140 ~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~ 200 (270)
..-++.+++-- ....+...+...+. .|++.-|.+++..++..||+|.++....+.++-+
T Consensus 58 ~~A~~~v~l~G-G~d~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 58 EEAKRYVELAG-GADKVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQ 116 (141)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33344455543 34455566666664 7999999999999999999999999888876554
No 361
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=70.03 E-value=17 Score=36.10 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 139 DLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 139 ~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
.--++.-++.||+|...|+.+- .+++.++.+++-.+.|++...-.|-.+.+|..+-.--+. .++|...+.+|.++|.-
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLi-q~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA-~~df~svE~lf~rCL~k 105 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLI-QYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA-RKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHH-HHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhh-hhhHHHHHHHHHHHHhh
Confidence 3478888999999999999998 445578999999999999998888777777555422222 47888888888888865
Q ss_pred CC
Q 024243 219 AP 220 (270)
Q Consensus 219 ~P 220 (270)
.-
T Consensus 106 ~l 107 (660)
T COG5107 106 SL 107 (660)
T ss_pred hc
Confidence 43
No 362
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.76 E-value=8.9 Score=28.42 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=11.5
Q ss_pred hCCHHHHHHHHHHHHHh
Q 024243 167 RGDLLKAEEYCARAILM 183 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIel 183 (270)
.|+|++|+++|..||+.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46777777777777654
No 363
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.40 E-value=15 Score=38.71 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=71.5
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC-----CCHH---HHHHHHHH---H
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP-----NDGN---VLSMYGDL---I 198 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP-----~n~~---al~~lA~l---l 198 (270)
+..+..+.|+..|+++.+..|...... |+|..+...-..|+...++-+-.+.++- .+.+ .|+.-|.. .
T Consensus 298 tDa~s~~~a~~WyrkaFeveP~~~sGI-N~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~as 376 (1226)
T KOG4279|consen 298 TDAESLNHAIEWYRKAFEVEPLEYSGI-NLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEAS 376 (1226)
T ss_pred cchhhHHHHHHHHHHHhccCchhhccc-cHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhh
Confidence 344678999999999999999876665 6664444333466777777776776662 2222 22233311 1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 199 WQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 199 ~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
.. .+++.+|+...++.+++.|...+....+.+++..
T Consensus 377 VL-And~~kaiqAae~mfKLk~P~WYLkS~meni~l~ 412 (1226)
T KOG4279|consen 377 VL-ANDYQKAIQAAEMMFKLKPPVWYLKSTMENILLI 412 (1226)
T ss_pred hh-ccCHHHHHHHHHHHhccCCceehHHHHHHHHHHH
Confidence 22 6899999999999999999888877777776654
No 364
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.40 E-value=19 Score=29.86 Aligned_cols=52 Identities=17% Similarity=0.060 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 186 NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 186 ~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
...+.....|.-.+. .|++.-|..+.+.++..+|+|..+....+.+|..+|.
T Consensus 68 GG~d~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 345555666656666 8999999999999999999999999999999987764
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.56 E-value=23 Score=30.13 Aligned_cols=52 Identities=25% Similarity=0.350 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND 187 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n 187 (270)
..+..+...++.++..| ++.++.+++..+. ..|+.++|....+++..+.|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcH
Confidence 55667777788888888 4777778886666 4899999999999999999933
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.49 E-value=29 Score=34.07 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024243 185 PNDGNVLSMYGDLIWQSHKDASRAESYFDQAV 216 (270)
Q Consensus 185 P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL 216 (270)
-++...|..+|..... +|+++-|+.+|+++-
T Consensus 344 ~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALR-QGNIELAEECYQKAK 374 (443)
T ss_dssp CSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT
T ss_pred cCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhc
Confidence 4688899999988888 999999999998753
No 367
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=68.21 E-value=21 Score=32.32 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHhhCCHHHHHHHHHHHHH
Q 024243 135 NNSTDLYYQKMIQA-----DPRNPLLL---SNYARFLKEARGDLLKAEEYCARAIL 182 (270)
Q Consensus 135 ~~eA~~~y~kALel-----dP~n~~al---~~lA~~l~~~~Gd~~eA~e~~ekAIe 182 (270)
.+.|...|++|+++ .|.+|..+ .+++.++|+..++.++|.++.++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999874 47887543 57888999988999999988777765
No 368
>PLN03138 Protein TOC75; Provisional
Probab=68.05 E-value=11 Score=39.63 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhCCCC
Q 024243 138 TDLYYQKMIQADPRN 152 (270)
Q Consensus 138 A~~~y~kALeldP~n 152 (270)
.+..+.+++.+.|..
T Consensus 166 ~e~~l~~~i~~kpG~ 180 (796)
T PLN03138 166 TEDSFFEMVTLRPGG 180 (796)
T ss_pred hHHHHHHHHhcCCCC
Confidence 444455555555553
No 369
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=67.97 E-value=21 Score=31.53 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CC
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH----KD 204 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~----~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~----g~ 204 (270)
++|++|.+.|+.--+.+. .+..-+.||.....- .++...|++.|+.|.. .+++.+-.+++.++|... .+
T Consensus 49 knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKAD 125 (248)
T ss_pred HHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCC
Confidence 455555555554433332 355556777433321 2467889999988886 567777778886665421 22
Q ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 205 --ASRAESYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 205 --~e~A~~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
..+|++++.++.+ -++..+.+.+...++
T Consensus 126 pd~~Ka~~y~traCd--l~~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 126 PDSEKAERYMTRACD--LEDGEACFLLSTMYM 155 (248)
T ss_pred CCcHHHHHHHHHhcc--CCCchHHHHHHHHHh
Confidence 5588888888865 578888888876654
No 370
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.92 E-value=53 Score=27.53 Aligned_cols=52 Identities=8% Similarity=0.051 Sum_probs=29.9
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~ 219 (270)
+|+-++-.+.++...+-+..+++.+..+|..|-. .|+..+|.+++.+|.+..
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANELLKEACEKG 150 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHHHHHHHHhc
Confidence 5666666667776666555677777777744444 777777777777776643
No 371
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=67.22 E-value=12 Score=23.21 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=13.0
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYA 160 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA 160 (270)
+++.|...|++.+...|+ +..|..+|
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 345555555555555544 44444444
No 372
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.07 E-value=88 Score=27.47 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=67.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHH----HHHHHhhCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYA----RFLKEARGDLLKAEEYCARA-ILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA----~~l~~~~Gd~~eA~e~~ekA-IeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
+.|+-+.|+.+|.++-...| .|.....++ .++..-.|-|+.=....+.. -..+|--..+.-.|+...|+ .|++
T Consensus 106 ~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k-agd~ 183 (221)
T COG4649 106 QKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK-AGDF 183 (221)
T ss_pred hcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh-ccch
Confidence 35899999999998665544 343333333 23443457787655544432 33345455566777866777 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~ 236 (270)
.+|..+|.+... +...+....+.+.++.++
T Consensus 184 a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 184 AKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 999999999887 555566666666666543
No 373
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.60 E-value=26 Score=35.25 Aligned_cols=100 Identities=17% Similarity=0.116 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
+...+.+.+.....+.|+++..+...++.+.. .|+.+.|+..++..+...-. ..-.++.+|+++.- +.+|.+|-.+
T Consensus 248 d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~-~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~ 325 (546)
T KOG3783|consen 248 DGEECEKALKKYRKRYPKGALWLLMEARILSI-KGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVG-QHQYSRAADS 325 (546)
T ss_pred cHHHHHHHhHHHHHhCCCCccHHHHHHHHHHH-cccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhH
Confidence 33777788888888999999999999977775 68888899999999882211 12234566755555 7889999999
Q ss_pred HHHHHHhCC-CCHHHHHHHHHHHHH
Q 024243 212 FDQAVKAAP-DDCYVLASHAHFLWD 235 (270)
Q Consensus 212 ~ekAL~~~P-~~~~~~~~la~il~~ 235 (270)
+....+... .++...+..|.++..
T Consensus 326 ~~~L~desdWS~a~Y~Yfa~cc~l~ 350 (546)
T KOG3783|consen 326 FDLLRDESDWSHAFYTYFAGCCLLQ 350 (546)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 999987654 455555556566543
No 374
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.40 E-value=14 Score=27.43 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhC
Q 024243 171 LKAEEYCARAILMS 184 (270)
Q Consensus 171 ~eA~e~~ekAIeld 184 (270)
++|+.+..+|++.|
T Consensus 4 ~kai~Lv~~A~~eD 17 (75)
T cd02680 4 ERAHFLVTQAFDED 17 (75)
T ss_pred HHHHHHHHHHHHhh
Confidence 44455555554433
No 375
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=66.39 E-value=90 Score=31.29 Aligned_cols=91 Identities=10% Similarity=0.035 Sum_probs=71.7
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND--GNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n--~~al~~lA~ll~~~~g~~e~ 207 (270)
...+++.-|-..|+-.+...|+.+.....+-.++.. .++-..|..+|+++++.-..+ ..+|..+-. +-.+-|+...
T Consensus 443 ~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~-inde~naraLFetsv~r~~~~q~k~iy~kmi~-YEs~~G~lN~ 520 (660)
T COG5107 443 YATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR-INDEENARALFETSVERLEKTQLKRIYDKMIE-YESMVGSLNN 520 (660)
T ss_pred HhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHH-HHHhhcchHH
Confidence 345789999999999999999999999988877774 799999999999998766555 344444442 3333788988
Q ss_pred HHHHHHHHHHhCCCC
Q 024243 208 AESYFDQAVKAAPDD 222 (270)
Q Consensus 208 A~~~~ekAL~~~P~~ 222 (270)
+..+=++..++.|..
T Consensus 521 v~sLe~rf~e~~pQe 535 (660)
T COG5107 521 VYSLEERFRELVPQE 535 (660)
T ss_pred HHhHHHHHHHHcCcH
Confidence 988888888888854
No 376
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=65.89 E-value=41 Score=34.31 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
+..+++.+..+.-+--....+..+...|.++.. .++.++|-++|++.+..+|+ +.++.+|.-+++ .|-..+|...+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~ 97 (578)
T PRK15490 22 KKLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLIL 97 (578)
T ss_pred hhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHH
Confidence 455566655555444444555666677767775 58999999999999999987 677788877777 88888888877
Q ss_pred H
Q 024243 213 D 213 (270)
Q Consensus 213 e 213 (270)
.
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 7
No 377
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=65.52 E-value=76 Score=26.12 Aligned_cols=77 Identities=18% Similarity=0.118 Sum_probs=51.8
Q ss_pred hCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHH---
Q 024243 167 RGDLLKAEEYCARAILMSPN------------DGNVLSMYGDLIWQSHKDASRAESYFDQAV-------KAAPDDCY--- 224 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~------------n~~al~~lA~ll~~~~g~~e~A~~~~ekAL-------~~~P~~~~--- 224 (270)
-|-|++|.+-|++|++..-. |+-++..|+..+.. +|+|++++.-.+++| +++-+...
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 48999999999999987621 33455666655666 999997666555555 44555544
Q ss_pred -HHHHHHHHHHHcCCcHHHHh
Q 024243 225 -VLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 225 -~~~~la~il~~~Ge~eea~~ 244 (270)
+-++.+..+..+|+.+++..
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~ 121 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALK 121 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHH
Confidence 34567888899999988874
No 378
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.32 E-value=16 Score=27.06 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=10.9
Q ss_pred hhCCHHHHHHHHHHHHH
Q 024243 166 ARGDLLKAEEYCARAIL 182 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIe 182 (270)
..|+|++|+.+|..||+
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45666666666666665
No 379
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=64.68 E-value=11 Score=22.27 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHH
Q 024243 204 DASRAESYFDQAVK 217 (270)
Q Consensus 204 ~~e~A~~~~ekAL~ 217 (270)
+..+|..+|++|.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 44555555555543
No 380
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=63.54 E-value=28 Score=30.80 Aligned_cols=89 Identities=11% Similarity=0.114 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHH
Q 024243 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS----HKDASRAESYFDQAVKAAPDDCYV 225 (270)
Q Consensus 150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~----~g~~e~A~~~~ekAL~~~P~~~~~ 225 (270)
...|+.-..|+..+-..+.+|++|.+.|..-..-+. .+..-+.|+.-++.- .++...|+++|..+.+ -+++.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 345666677777776667899999999988776444 666667787433321 3467889999999887 567888
Q ss_pred HHHHHHHHHHcCCcHH
Q 024243 226 LASHAHFLWDADEDEE 241 (270)
Q Consensus 226 ~~~la~il~~~Ge~ee 241 (270)
..+++.++|.-....+
T Consensus 108 C~~~gLl~~~g~~~r~ 123 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRK 123 (248)
T ss_pred HhhhhhhhccCcCCcc
Confidence 8889988887544333
No 381
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.33 E-value=40 Score=30.58 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=50.6
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCY 224 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~ 224 (270)
.+...+|+...+.-++.+|.+......|=.++.. .|++++|..-++-+-++.|++..
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccch
Confidence 5899999999999999999999888888877777 99999999999999999997543
No 382
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=63.21 E-value=32 Score=33.96 Aligned_cols=42 Identities=14% Similarity=-0.015 Sum_probs=20.7
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
.++.+-|+....+.|.+||.+..-+..-| .+++.+.+|.+|.
T Consensus 241 ~rkpdlALnh~hrsI~lnP~~frnHLrqA-avfR~LeRy~eAa 282 (569)
T PF15015_consen 241 MRKPDLALNHSHRSINLNPSYFRNHLRQA-AVFRRLERYSEAA 282 (569)
T ss_pred cCCCchHHHHHhhhhhcCcchhhHHHHHH-HHHHHHHHHHHHH
Confidence 35555555555555555555555444444 3333344554443
No 383
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.20 E-value=15 Score=27.17 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhCC
Q 024243 171 LKAEEYCARAILMSP 185 (270)
Q Consensus 171 ~eA~e~~ekAIeldP 185 (270)
..|+++..+|++.|-
T Consensus 4 ~~Ai~~a~~Ave~D~ 18 (76)
T cd02681 4 RDAVQFARLAVQRDQ 18 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777653
No 384
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=60.83 E-value=18 Score=27.09 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 024243 168 GDLLKAEEYCARAILMSP 185 (270)
Q Consensus 168 Gd~~eA~e~~ekAIeldP 185 (270)
+.|++|.++..+||..|.
T Consensus 3 ~~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 3 GYYKQAFEEISKALRADE 20 (79)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 345555555555555543
No 385
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.81 E-value=1.2e+02 Score=29.02 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHH--HHHHHHH--HHHHhhCCHHHHHHHHHHHHHh
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPL--LLSNYAR--FLKEARGDLLKAEEYCARAILM 183 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~--al~~lA~--~l~~~~Gd~~eA~e~~ekAIel 183 (270)
.++|..|...++...+.-|.+.. .+..+.. .... .-++.+|.+++++.+..
T Consensus 144 ~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 144 RYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred cCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 47888888888888876344333 2223322 2232 46788888888876653
No 386
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=59.40 E-value=60 Score=30.00 Aligned_cols=68 Identities=12% Similarity=-0.000 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----C-----------------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 137 STDLYYQKMIQADPRNPLLLSNYARFLKEAR----G-----------------DLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 137 eA~~~y~kALeldP~n~~al~~lA~~l~~~~----G-----------------d~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.-...++.=++..|+...++..+|.++...- | -.++|+.++.+||+++|....++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4566777778899999999988886554321 1 137899999999999999999988887
Q ss_pred HHHHHHcCCH
Q 024243 196 DLIWQSHKDA 205 (270)
Q Consensus 196 ~ll~~~~g~~ 205 (270)
++.-. .|+.
T Consensus 141 ~~s~~-fgeP 149 (277)
T PF13226_consen 141 NISAY-FGEP 149 (277)
T ss_pred HHHhh-cCCc
Confidence 66554 5554
No 387
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=59.35 E-value=21 Score=26.40 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHH
Q 024243 170 LLKAEEYCARAILMSPNDGNV 190 (270)
Q Consensus 170 ~~eA~e~~ekAIeldP~n~~a 190 (270)
|.+|++.+.+++...|++...
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHH
Confidence 445556666666667776653
No 388
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=59.23 E-value=38 Score=30.25 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 171 LKAEEYCARAILM-----SPNDGN---VLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 171 ~eA~e~~ekAIel-----dP~n~~---al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
++|.+.|++|+++ .|.++- ...+++.+++..+++.++|..+.++|++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6788888888764 577775 44677767788899999998888877754
No 389
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=58.96 E-value=90 Score=30.96 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC------CCHH-----HHHHHHHHHHHHcCC
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP------NDGN-----VLSMYGDLIWQSHKD 204 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP------~n~~-----al~~lA~ll~~~~g~ 204 (270)
.+-.+.++-||+........- .|| ...|+|..|+++|.+.-.+.. +|.. +-..+..+|+. +++
T Consensus 170 PqiDkwl~vAL~das~~yrqk-~ya----~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~-~rk 243 (569)
T PF15015_consen 170 PQIDKWLQVALKDASSCYRQK-KYA----VAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR-MRK 243 (569)
T ss_pred hhHHHHHHHHHHHHHHHHhhH-HHH----HHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh-cCC
Confidence 444556666666554444432 344 234889999999988766552 2221 23446644555 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
.+.|+....+.+..+|-.+.-+...|.++..+.++.+|.
T Consensus 244 pdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAa 282 (569)
T PF15015_consen 244 PDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAA 282 (569)
T ss_pred CchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888999998999988886
No 390
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=58.85 E-value=13 Score=35.62 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 137 STDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199 (270)
Q Consensus 137 eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~ 199 (270)
.|+..-..+++.++..+.+++..+.... ...++++|.+.++.|.+.+|++..+...+..+-.
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~-~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYK-LLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHH-hhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 3344444556688888999999996666 4799999999999999999999998877775543
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.73 E-value=22 Score=23.50 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024243 192 SMYGDLIWQSHKDASRAESYFDQAVK 217 (270)
Q Consensus 192 ~~lA~ll~~~~g~~e~A~~~~ekAL~ 217 (270)
+.+|..|+. +|+++.|...++.++.
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHH
Confidence 456666666 7777777777777774
No 392
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.70 E-value=76 Score=28.29 Aligned_cols=48 Identities=17% Similarity=-0.030 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 024243 135 NNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILM 183 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel 183 (270)
-...+.++.+|++..... ..+...+|..++. .|++++|.++|+.+...
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~-~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR-LGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 345566666666553221 2333456655553 57777777777766443
No 393
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=58.27 E-value=27 Score=23.05 Aligned_cols=32 Identities=38% Similarity=0.518 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 176 YCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 176 ~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
.|.+||..+|++......||.-+-. +|+..+|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e-~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDE-HGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHH
Confidence 3455555556555555555554444 5555443
No 394
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.07 E-value=97 Score=29.80 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP---NDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP---~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
-++..-..+|+....+.|.-. +-.|.+..+... --...++...+...+ +| .+-.++...|+++.+ .|+.++|.
T Consensus 310 tDW~~I~aLYdaL~~~apSPv-V~LNRAVAla~~-~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~r-Lgr~~eAr 385 (415)
T COG4941 310 TDWPAIDALYDALEQAAPSPV-VTLNRAVALAMR-EGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLAR-LGRVEEAR 385 (415)
T ss_pred CChHHHHHHHHHHHHhCCCCe-EeehHHHHHHHh-hhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHH-hCChHHHH
Confidence 366666666666666655533 333455444432 223444444444443 33 344566677777777 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH
Q 024243 210 SYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~ 231 (270)
..|++|+.+.++.....+....
T Consensus 386 ~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 386 AAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHHHHhcCChHHHHHHHHH
Confidence 9999999999987766555544
No 395
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=57.88 E-value=16 Score=26.84 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=10.8
Q ss_pred hhCCHHHHHHHHHHHHH
Q 024243 166 ARGDLLKAEEYCARAIL 182 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIe 182 (270)
..|+|++|..+|..+|+
T Consensus 18 ~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 18 EEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 34667776666666665
No 396
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=57.23 E-value=27 Score=24.63 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=8.4
Q ss_pred hCCHHHHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAIL 182 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIe 182 (270)
.|++++|+++|.+|++
T Consensus 18 ~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 18 AGNYEEALELYKEAIE 33 (69)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555555555543
No 397
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=57.03 E-value=28 Score=25.23 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHh
Q 024243 136 NSTDLYYQKMIQA 148 (270)
Q Consensus 136 ~eA~~~y~kALel 148 (270)
+.|+.++++|++.
T Consensus 4 ~~A~~l~~~Av~~ 16 (75)
T cd02678 4 QKAIELVKKAIEE 16 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666544
No 398
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=56.64 E-value=59 Score=35.11 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CCHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH----KDASRAE 209 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~----g~~e~A~ 209 (270)
.+++|+..|++ |.-.|.-|.=+...| ..|+..|+|++-++.|.-|++..|+++++-...-.+.++.. .+...|.
T Consensus 534 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 534 DFTQALSEFSY-LHGGVGAPLEYLGKA-LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHH-hcCCCCCchHHHhHH-HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655555 334566666666677 45667899999999999999999999987665555555521 2233455
Q ss_pred HHHHHHHHhCCCC
Q 024243 210 SYFDQAVKAAPDD 222 (270)
Q Consensus 210 ~~~ekAL~~~P~~ 222 (270)
...--++.+.|..
T Consensus 612 ~~~~~~~~~~~~~ 624 (932)
T PRK13184 612 VFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHHhCccc
Confidence 5555666666654
No 399
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=56.37 E-value=34 Score=20.18 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 173 AEEYCARAILMSPNDGNVLSMYGDL 197 (270)
Q Consensus 173 A~e~~ekAIeldP~n~~al~~lA~l 197 (270)
.+++..++|..+|.|..+|...-.+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~l 26 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWL 26 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHH
Confidence 3455666666667666666555543
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.72 E-value=1.1e+02 Score=36.34 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHH-Hh--C----CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 135 NNSTDLYYQKMI-QA--D----PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 135 ~~eA~~~y~kAL-el--d----P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
..+-+-.+++++ .. + ..-...|.++|++.. ..|+++.|..+.-+|.+.. -++++...|.++|. .|+-..
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-LAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHH
Confidence 444455555543 22 3 334789999995555 5799999999999999987 57888999999999 999999
Q ss_pred HHHHHHHHHHhC
Q 024243 208 AESYFDQAVKAA 219 (270)
Q Consensus 208 A~~~~ekAL~~~ 219 (270)
|+.++++.+..+
T Consensus 1721 Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1721 ALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhh
Confidence 999999999554
No 401
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=55.45 E-value=25 Score=25.34 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=8.4
Q ss_pred hCCHHHHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAIL 182 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIe 182 (270)
.|++++|+.+|.+|++
T Consensus 21 ~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 21 AGDYEEALELYKKAIE 36 (77)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555555555543
No 402
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=54.18 E-value=1.9e+02 Score=30.80 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW--QSHKDASRAESY 211 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~--~~~g~~e~A~~~ 211 (270)
..++-+.-++.-+.+++.+...+..|-..+. ..|++++-...-+++-++.|.++..|.....-.. ...++...++..
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llr-k~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLR-KLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3455677778888888888877777774555 5799999999999999999999999987775432 224677788999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADED 239 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~ 239 (270)
|++||.. -+...+|..++.++...+..
T Consensus 173 ~ekal~d-y~~v~iw~e~~~y~~~~~~~ 199 (881)
T KOG0128|consen 173 FEKALGD-YNSVPIWEEVVNYLVGFGNV 199 (881)
T ss_pred HHHHhcc-cccchHHHHHHHHHHhcccc
Confidence 9999864 45677888888888777664
No 403
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=54.15 E-value=56 Score=27.41 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld 184 (270)
++.-++-...++...+-+..+|.++..+|.++. ..|+..+|.+++.+|.+.-
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~-klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYK-KLGNTREANELLKEACEKG 150 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-HhcchhhHHHHHHHHHHhc
Confidence 456777788888888777788999999997777 5899999999999998753
No 404
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=54.06 E-value=98 Score=30.48 Aligned_cols=58 Identities=22% Similarity=0.254 Sum_probs=39.9
Q ss_pred hhCCHHHHHHHHHHHHH--hCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024243 166 ARGDLLKAEEYCARAIL--MSPNDGN--VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCY 224 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIe--ldP~n~~--al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~ 224 (270)
..+.|+.|..+..++.- ..-++.. .++.+|.+-.. +.+|..|..+|-+|+...|.+..
T Consensus 221 ~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-qldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 221 HNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-QLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred hhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-hcchhHHHHHHHHHHHhCcchhh
Confidence 46788888888877762 1223333 34455544444 89999999999999999997543
No 405
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=53.71 E-value=98 Score=29.12 Aligned_cols=46 Identities=20% Similarity=0.106 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 168 Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
..+-+|+-+++.++..+|.|......+..+|.. .|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHh
Confidence 356778889999999999999999888877766 8999998888763
No 406
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.64 E-value=1.5e+02 Score=26.79 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHHH----------------HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 151 RNPLLLSNYARFLKEARGDLLKAEEYCA----------------RAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~e----------------kAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
.++..+..+|..++. .+++.+|+.+|- ...+-+|...+.+...|.+-+...++...|...++.
T Consensus 88 Gdp~LH~~~a~~~~~-e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 88 GDPELHHLLAEKLWK-EGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp --HHHHHHHHHHHHH-TT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-hccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 568888888877774 688877766552 223445788888888887767668999999987777
Q ss_pred HHHh
Q 024243 215 AVKA 218 (270)
Q Consensus 215 AL~~ 218 (270)
.++.
T Consensus 167 f~~~ 170 (260)
T PF04190_consen 167 FTSK 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 407
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=53.35 E-value=26 Score=31.54 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=49.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHhhCCHHHHHHHHHHHHHh--C---CCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLL------------SNYARFLKEARGDLLKAEEYCARAILM--S---PNDGN 189 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al------------~~lA~~l~~~~Gd~~eA~e~~ekAIel--d---P~n~~ 189 (270)
.|...-|+|+.|+...+.||+.+-.-|.-+ ...+...+. .|+.-+. .+.+....+ + |+...
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~-ag~~~e~-~~~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAAS-AGESVEP-YFLRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHH-cCCCCCh-HHHHHHHHHHhcCCCChHHH
Confidence 344566899999999999999863332211 111211111 2321110 112222222 1 33332
Q ss_pred H--HHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCC
Q 024243 190 V--LSMYGDLIWQ--------SHKDASRAESYFDQAVKAAPD 221 (270)
Q Consensus 190 a--l~~lA~ll~~--------~~g~~e~A~~~~ekAL~~~P~ 221 (270)
+ +-..|..+++ ..++...|+.++++|++++|+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 2 2233322322 245778999999999999996
No 408
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=53.25 E-value=28 Score=25.01 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=9.0
Q ss_pred hCCHHHHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAIL 182 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIe 182 (270)
.|++++|+.+|..|++
T Consensus 19 ~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 19 DGNYEEALELYKEALD 34 (75)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4566665555555554
No 409
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=52.56 E-value=37 Score=24.36 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~ 186 (270)
.+++|..+..+|++.+-.. .+. +...-|.+|+++|.+++..+|+
T Consensus 4 ~~~~A~~li~~Av~~d~~g-----~~~----eAl~~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 4 YLSKAKELISKALKADEAG-----DYE----EALELYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CHH----HHHHHHHHHHHHHHHHhccCCC
Confidence 3567777777777766532 111 1123356777777777777764
No 410
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.42 E-value=82 Score=34.64 Aligned_cols=88 Identities=17% Similarity=0.075 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASH 229 (270)
Q Consensus 150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~l 229 (270)
-+.+.+|..+|.+-.+ .+...+|++-|-|| +|+..+..--.+.-+ .|+|++-+.++..|-+.-. .+.+-..+
T Consensus 1101 ~n~p~vWsqlakAQL~-~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk~~-E~~id~eL 1172 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQ-GGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKKVR-EPYIDSEL 1172 (1666)
T ss_pred hCChHHHHHHHHHHHh-cCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhhc-CccchHHH
Confidence 3557788888866664 67888888887664 445555555545555 8888888888887765433 45555666
Q ss_pred HHHHHHcCCcHHHHhc
Q 024243 230 AHFLWDADEDEEDEQV 245 (270)
Q Consensus 230 a~il~~~Ge~eea~~~ 245 (270)
..+|.+.++..|=++.
T Consensus 1173 i~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHHhchHHHHHHH
Confidence 6677777776666654
No 411
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=51.75 E-value=71 Score=23.50 Aligned_cols=11 Identities=0% Similarity=0.202 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 024243 137 STDLYYQKMIQ 147 (270)
Q Consensus 137 eA~~~y~kALe 147 (270)
.|+.+.++|++
T Consensus 5 ~a~~l~~~Ave 15 (77)
T cd02683 5 AAKEVLKRAVE 15 (77)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 412
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=51.68 E-value=1.4e+02 Score=30.36 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH-HhCCCCHHHH-HHHHHHHHHHcCCHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAI-LMSPNDGNVL-SMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAI-eldP~n~~al-~~lA~ll~~~~g~~e~A~~~ 211 (270)
-...+..|+.++-+..++...-|..+|.......|+.++|..++.+.= +++|....-+ ...+.+... ++++..|..+
T Consensus 43 a~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la-~~q~~~Al~~ 121 (604)
T COG3107 43 ANASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALA-QKQPAAALQQ 121 (604)
T ss_pred cchhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHh-ccChHHHHHH
Confidence 345666777888877777777777776555556799999999998876 6665433333 334444454 8999999999
Q ss_pred HHHHHHh-CCCCHHHHHHHHHH
Q 024243 212 FDQAVKA-APDDCYVLASHAHF 232 (270)
Q Consensus 212 ~ekAL~~-~P~~~~~~~~la~i 232 (270)
+.+..-. -|.+-.+.+..+.+
T Consensus 122 L~~~~~~~ls~~Qq~Ry~q~~a 143 (604)
T COG3107 122 LAKLLPADLSQNQQARYYQARA 143 (604)
T ss_pred HhhcchhhcCHHHHHHHHHHHH
Confidence 8876532 33343344444333
No 413
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.44 E-value=2e+02 Score=30.82 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=70.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC----CCCHHHHHHH--HHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNP-----LLLSNYARFLKEARGDLLKAEEYCARAILMS----PNDGNVLSMY--GDLIWQ 200 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~-----~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld----P~n~~al~~l--A~ll~~ 200 (270)
.+++++|+++.+.++..-|.+. .++...+.+.. .+|++++|..+.+.+.++. --.-.+|..+ +.++..
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~-~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH-IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH-HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 4789999999999999988774 34445664555 4799999999999998884 3233333322 434455
Q ss_pred HcCCHHHHHH--HH----HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 201 SHKDASRAES--YF----DQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 201 ~~g~~e~A~~--~~----ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
+|+...|+. .| .+-+...|.+.......+.+++..-+.+.++
T Consensus 550 -qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~ 597 (894)
T COG2909 550 -QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAE 597 (894)
T ss_pred -hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhh
Confidence 784444332 22 2334446666667677777666655555554
No 414
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=51.32 E-value=77 Score=29.82 Aligned_cols=47 Identities=15% Similarity=-0.022 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA 180 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA 180 (270)
...-+|+..++.++..+|.|..+...+.+.+. ..|-.+.|.+.|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~-~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYS-LLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHhc
Confidence 46789999999999999999999988885555 589999999998654
No 415
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.28 E-value=82 Score=37.15 Aligned_cols=103 Identities=12% Similarity=0.008 Sum_probs=74.7
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-----------HH------HHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-----------GN------VLS 192 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-----------~~------al~ 192 (270)
..+|.++.|..++-+|.+.. -+.+....|..+.. +|+...|+..++..++++-.+ .. +..
T Consensus 1681 R~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L 1757 (2382)
T KOG0890|consen 1681 RLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKL 1757 (2382)
T ss_pred HhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHH
Confidence 34689999999999998887 56777889999995 799999999999999877322 11 222
Q ss_pred HHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243 193 MYGDLIWQSHKDAS--RAESYFDQAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 193 ~lA~ll~~~~g~~e--~A~~~~ekAL~~~P~~~~~~~~la~il~~~ 236 (270)
.++. +....++++ +-+.+|.++.++.|....-++.+|..|-+.
T Consensus 1758 ~~~~-~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1758 KITK-YLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred HHHH-HHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 2221 222234443 567999999999998777777777655444
No 416
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.98 E-value=6.3 Score=41.25 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=69.0
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH--hhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKE--ARGDLLKAEEYCARAILMSPN-DGNVLSMYGDLIW- 199 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~--~~Gd~~eA~e~~ekAIeldP~-n~~al~~lA~ll~- 199 (270)
....+|+.-+.+.+.. +.=|+.- .+-+.||.++-+ .-||-++|+...-.+++.+-. .++.+-.-|.+|-
T Consensus 212 RDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKD 290 (1226)
T KOG4279|consen 212 RDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKD 290 (1226)
T ss_pred ccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhh
Confidence 3456888888877764 4445321 122234423332 238899999999999998743 3344333332221
Q ss_pred -------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Q 024243 200 -------QSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241 (270)
Q Consensus 200 -------~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ee 241 (270)
...+..+.|+.+|+||.+..| ..+.=.+++.++...|+.-+
T Consensus 291 mF~~S~ytDa~s~~~a~~WyrkaFeveP-~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 291 MFIASNYTDAESLNHAIEWYRKAFEVEP-LEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred hhhccCCcchhhHHHHHHHHHHHhccCc-hhhccccHHHHHHHhhhhcc
Confidence 113556789999999999999 45666788888888887433
No 417
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.94 E-value=79 Score=28.16 Aligned_cols=72 Identities=11% Similarity=-0.063 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCC
Q 024243 171 LKAEEYCARAILMSPN------DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD------DCYVLASHAHFLWDADE 238 (270)
Q Consensus 171 ~eA~e~~ekAIeldP~------n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~------~~~~~~~la~il~~~Ge 238 (270)
...++++++|++.... -..+...+|..++. .|++++|+.+|+++...... ...++..+..++...|+
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~-~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR-LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 3445566666655432 12344577777787 99999999999999766443 35567777778888888
Q ss_pred cHHHH
Q 024243 239 DEEDE 243 (270)
Q Consensus 239 ~eea~ 243 (270)
.++.-
T Consensus 234 ~~~~l 238 (247)
T PF11817_consen 234 VEDYL 238 (247)
T ss_pred HHHHH
Confidence 66554
No 418
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=49.78 E-value=63 Score=30.90 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHH--HHHHHHhCCC--CHH-HHHHHHHHHHHHcCCHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEY--CARAILMSPN--DGN-VLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~--~ekAIeldP~--n~~-al~~lA~ll~~~~g~~e~A~~ 210 (270)
..-..++++-....|+....++.||.+.|+ +|+|..|-.+ +=+++--+|+ +.. .|-.+| .-.. +.+++-|++
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqye-CGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL-~qnWd~A~e 188 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYE-CGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEIL-TQNWDGALE 188 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHH-HhhHHHHHH
Confidence 355667777777789999999999999996 9999999885 4566655553 222 233334 2233 578999998
Q ss_pred HHHHHHHh
Q 024243 211 YFDQAVKA 218 (270)
Q Consensus 211 ~~ekAL~~ 218 (270)
.+.+.-+.
T Consensus 189 dL~rLre~ 196 (432)
T KOG2758|consen 189 DLTRLREY 196 (432)
T ss_pred HHHHHHHH
Confidence 88876544
No 419
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.39 E-value=1.1e+02 Score=30.98 Aligned_cols=72 Identities=17% Similarity=0.043 Sum_probs=50.8
Q ss_pred CCCCHHHHH-HHHHHHHHhhCCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024243 149 DPRNPLLLS-NYARFLKEARGDLLKAEEYCARAILMS------P-NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP 220 (270)
Q Consensus 149 dP~n~~al~-~lA~~l~~~~Gd~~eA~e~~ekAIeld------P-~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P 220 (270)
|+++.-..+ .+| +..+..|+...|.++|..+++.. + --|.+++.+|-++|...|-..+|..++.+|-+...
T Consensus 444 d~Dd~~lk~lL~g-~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKG-VILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 444443333 455 55556899999999998888432 2 24678899998888833449999999999988774
Q ss_pred C
Q 024243 221 D 221 (270)
Q Consensus 221 ~ 221 (270)
+
T Consensus 523 d 523 (546)
T KOG3783|consen 523 D 523 (546)
T ss_pred c
Confidence 3
No 420
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=49.25 E-value=2e+02 Score=29.41 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------------------CCCHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------------------PNDGNVLSM 193 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------------------P~n~~al~~ 193 (270)
..++-....++.++.+=++...-..++ .+++ +++-++|..+|.+|+..- +++.+....
T Consensus 113 ~n~~l~~lWer~ve~dfnDvv~~ReLa-~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~ 190 (711)
T COG1747 113 GNEQLYSLWERLVEYDFNDVVIGRELA-DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLR 190 (711)
T ss_pred CchhhHHHHHHHHHhcchhHHHHHHHH-HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHH
Confidence 445666677778888888888777888 6665 589999999998887643 223222211
Q ss_pred H------------HHH-------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 194 Y------------GDL-------IWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 194 l------------A~l-------l~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
+ +.+ .|....++.+|++.+...++.+..+..+.-++...+..
T Consensus 191 l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 191 LQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 1 111 22235678889999999999888887777777666654
No 421
>PF13041 PPR_2: PPR repeat family
Probab=49.09 E-value=70 Score=20.60 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=9.8
Q ss_pred hCCHHHHHHHHHHHHHhC
Q 024243 167 RGDLLKAEEYCARAILMS 184 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeld 184 (270)
.|++++|.++|++..+..
T Consensus 16 ~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 16 AGKFEEALKLFKEMKKRG 33 (50)
T ss_pred CcCHHHHHHHHHHHHHcC
Confidence 455555555555555443
No 422
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.07 E-value=79 Score=33.65 Aligned_cols=110 Identities=18% Similarity=0.040 Sum_probs=0.0
Q ss_pred cccccccCCChHHHHHHHHH------HHHh----CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243 125 WGSWDPNNHGNNSTDLYYQK------MIQA----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY 194 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~k------ALel----dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~l 194 (270)
+|..|+...++++|+++|++ ++++ .|....-+-.-=-......|+++.|+..|-.| ..+..-
T Consensus 667 agdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea--------~~~~ka 738 (1636)
T KOG3616|consen 667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA--------NCLIKA 738 (1636)
T ss_pred hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh--------hhHHHH
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
-..... .+++.+|+.+++.....+- -...+-..+.-|...|+++-++.
T Consensus 739 ieaai~-akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 739 IEAAIG-AKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHhh-hhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHH
No 423
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.84 E-value=70 Score=32.30 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=59.7
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
.||...|-+....++...|.++......+. ++...|+|+.|...+..+-.+--....+...+-+-++.+++.+++-.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~-i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSV-IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHH-HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 499999999999999999999999888884 44449999999999887766555444555555556667777777653
No 424
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=48.75 E-value=46 Score=24.37 Aligned_cols=14 Identities=0% Similarity=-0.092 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHh
Q 024243 135 NNSTDLYYQKMIQA 148 (270)
Q Consensus 135 ~~eA~~~y~kALel 148 (270)
.++|+.+.++|++.
T Consensus 3 l~~Ai~lv~~Av~~ 16 (75)
T cd02684 3 LEKAIALVVQAVKK 16 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666444
No 425
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=48.73 E-value=40 Score=25.19 Aligned_cols=18 Identities=17% Similarity=-0.044 Sum_probs=12.8
Q ss_pred ChHHHHHHHHHHHHhCCC
Q 024243 134 GNNSTDLYYQKMIQADPR 151 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~ 151 (270)
.|+.|..+..++|+.+..
T Consensus 4 ~~~~A~~~I~kaL~~dE~ 21 (79)
T cd02679 4 YYKQAFEEISKALRADEW 21 (79)
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 567788888887777543
No 426
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=48.47 E-value=70 Score=32.58 Aligned_cols=66 Identities=23% Similarity=0.226 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 151 RNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMS-----PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 151 ~n~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIeld-----P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
..|.++.+|| -|.+.. .+-..++++|++||... -.+..-|..+|..+++ ++++.+|+.++-.|-+.
T Consensus 275 ~YPmALg~La-dLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 275 RYPMALGNLA-DLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAADV 347 (618)
T ss_dssp T-HHHHHHHH-HHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred hCchhhhhhH-hHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 3467777777 333221 33466888999998764 2344567778888888 99999999999887654
No 427
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=48.32 E-value=1.4e+02 Score=31.80 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------HcC
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA--RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ------SHK 203 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~--~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~------~~g 203 (270)
+|++++-...-+++-++.|.++..|..+.....-+ .++..++++.|++|+- |-++..+|..++..+.. ..+
T Consensus 126 ~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~ 204 (881)
T KOG0128|consen 126 LGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSE 204 (881)
T ss_pred hcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccc
Confidence 47888888888888999999999998877543322 2688899999999996 77788888777755432 136
Q ss_pred CHHHHHHHHHHHHHhC
Q 024243 204 DASRAESYFDQAVKAA 219 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~ 219 (270)
+++.-...|.+|+..-
T Consensus 205 d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 205 DYKKERSVFERALRSL 220 (881)
T ss_pred cchhhhHHHHHHHhhh
Confidence 7788888999998753
No 428
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=48.16 E-value=6 Score=40.01 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=2.5
Q ss_pred CccccCCCCCCC
Q 024243 8 TPILNSWIPHAK 19 (270)
Q Consensus 8 ~~~~~~~~~~~~ 19 (270)
+||.-||.+..+
T Consensus 455 ~~itlSWk~~~~ 466 (556)
T PF05918_consen 455 KNITLSWKEAKK 466 (556)
T ss_dssp -----TTS----
T ss_pred cccceeeeeccc
Confidence 467788875444
No 429
>PF12854 PPR_1: PPR repeat
Probab=47.98 E-value=46 Score=20.16 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=5.6
Q ss_pred cCCHHHHHHHHH
Q 024243 202 HKDASRAESYFD 213 (270)
Q Consensus 202 ~g~~e~A~~~~e 213 (270)
.|+.++|.++|+
T Consensus 20 ~G~~~~A~~l~~ 31 (34)
T PF12854_consen 20 AGRVDEAFELFD 31 (34)
T ss_pred CCCHHHHHHHHH
Confidence 444444444443
No 430
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=47.93 E-value=1.5e+02 Score=30.19 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
|..++-..-...++++.. .+-.++..++.++.+ ...++-..+.+|.++.+-++...-..++ .+++ ..+-+++..+
T Consensus 79 n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~e--n~n~~l~~lWer~ve~dfnDvv~~ReLa-~~yE-kik~sk~a~~ 153 (711)
T COG1747 79 NHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKE--NGNEQLYSLWERLVEYDFNDVVIGRELA-DKYE-KIKKSKAAEF 153 (711)
T ss_pred chHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHh--cCchhhHHHHHHHHHhcchhHHHHHHHH-HHHH-HhchhhHHHH
Confidence 345556666778888774 456777888877775 4677778889999999999999999999 5666 5888899999
Q ss_pred HHHHHHhC
Q 024243 212 FDQAVKAA 219 (270)
Q Consensus 212 ~ekAL~~~ 219 (270)
|.||+...
T Consensus 154 f~Ka~yrf 161 (711)
T COG1747 154 FGKALYRF 161 (711)
T ss_pred HHHHHHHh
Confidence 99888653
No 431
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=47.88 E-value=36 Score=24.41 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 024243 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~ 186 (270)
++.|+.+..+|++.|-.. ++. +...-|.+|+++|.+++..+|+
T Consensus 3 ~~~a~~l~~~Av~~D~~g-----~~~----~Al~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 3 LQQAKELIKQAVKEDEDG-----NYE----EALELYKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHHHHHHcC-----CHH----HHHHHHHHHHHHHHHHhccCCC
Confidence 355666666666665441 111 1123356677777777766664
No 432
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=47.63 E-value=1.8e+02 Score=25.63 Aligned_cols=28 Identities=25% Similarity=0.058 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 168 GDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 168 Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
||++.|-++|--.|...+=|...+..+|
T Consensus 55 ~d~~rA~Raf~lLiR~~~VDiR~~W~iG 82 (199)
T PF04090_consen 55 GDWDRAYRAFGLLIRCPEVDIRSLWGIG 82 (199)
T ss_pred ccHHHHHHHHHHHHcCCCCChHhcchHH
Confidence 4444444444444444444444444444
No 433
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=47.45 E-value=1.4e+02 Score=23.51 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=33.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCA 178 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~e 178 (270)
.+.....+.+++.++..++.++..+..+...+. .-+..+.+++++
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~--~~~~~~ll~~l~ 64 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYA--KYDPQKEIERLD 64 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHH--HHCHHHHHHHHH
Confidence 457889999999999998888888888874443 345666666666
No 434
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.15 E-value=2.2e+02 Score=29.35 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=51.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHH
Q 024243 162 FLKEARGDLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHKDASRAESYFDQA-----VKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 162 ~l~~~~Gd~~eA~e~~ekAIeldP~-n~~al~~lA~ll~~~~g~~e~A~~~~ekA-----L~~~P~~~~~~~~la~il~~ 235 (270)
.+. .+|-+.-|.++|+-.+.++|. |+-+...+-+++.....+|+==++.++.. +...|+-+ +-..+|.+|..
T Consensus 351 ~l~-~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~ 428 (665)
T KOG2422|consen 351 SLA-QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLR 428 (665)
T ss_pred HHH-hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHh
Confidence 344 469999999999999999997 88887777777766678887666665544 45556544 33344555544
Q ss_pred cCC
Q 024243 236 ADE 238 (270)
Q Consensus 236 ~Ge 238 (270)
..+
T Consensus 429 ~~~ 431 (665)
T KOG2422|consen 429 KNE 431 (665)
T ss_pred cCC
Confidence 444
No 435
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.11 E-value=2.1e+02 Score=31.71 Aligned_cols=93 Identities=19% Similarity=0.108 Sum_probs=66.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
+-|++|.+.|++. --|..+. +++.+..+..+.|.++.++. +.+++|..+|..-++ .+...+|++-|
T Consensus 1062 ~LyEEAF~ifkkf----~~n~~A~----~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~-~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF----DMNVSAI----QVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQ-GGLVKDAIESY 1127 (1666)
T ss_pred hHHHHHHHHHHHh----cccHHHH----HHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHh-cCchHHHHHHH
Confidence 3455666555542 2233333 25556678999999988775 568999999988777 89999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
-|| +|+..+.....+..+.|.+++=-.
T Consensus 1128 ika-----dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1128 IKA-----DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred Hhc-----CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 775 567777777777777777776543
No 436
>PF13041 PPR_2: PPR repeat family
Probab=44.10 E-value=86 Score=20.17 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Q 024243 187 DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP-DDCYVLASHA 230 (270)
Q Consensus 187 n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P-~~~~~~~~la 230 (270)
|...|..+-..+.+ .|++++|.++|++..+..- -+...+..+-
T Consensus 2 ~~~~yn~li~~~~~-~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 2 DVVTYNTLISGYCK-AGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred chHHHHHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455556656666 8999999999999887642 2444444443
No 437
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=43.94 E-value=51 Score=24.26 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhCC
Q 024243 208 AESYFDQAVKAAP 220 (270)
Q Consensus 208 A~~~~ekAL~~~P 220 (270)
|+++|.++++..|
T Consensus 32 aie~l~~~lk~e~ 44 (77)
T cd02683 32 GIDLLMQVLKGTK 44 (77)
T ss_pred HHHHHHHHHhhCC
Confidence 4444444444444
No 438
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=43.92 E-value=1.3e+02 Score=23.32 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
.||+.+|+..+.++-+..++..-.+...+.+-..+||
T Consensus 72 ~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 72 EGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 7888888888888876655555555555555555553
No 439
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=43.58 E-value=1.1e+02 Score=22.01 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=7.1
Q ss_pred hCCHHHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAI 181 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAI 181 (270)
.|++++|+.+|.+|+
T Consensus 19 ~g~y~eA~~~Y~~ai 33 (75)
T cd02678 19 AGNYEEALRLYQHAL 33 (75)
T ss_pred cCCHHHHHHHHHHHH
Confidence 455554444444444
No 440
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=43.08 E-value=69 Score=18.78 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~ 236 (270)
.+.+..+++..+|.+-.++..+-.++...
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 56788999999999999999888777543
No 441
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=43.06 E-value=72 Score=19.01 Aligned_cols=13 Identities=23% Similarity=0.135 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 024243 170 LLKAEEYCARAIL 182 (270)
Q Consensus 170 ~~eA~e~~ekAIe 182 (270)
+++|.++|++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555544
No 442
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=42.25 E-value=71 Score=23.34 Aligned_cols=15 Identities=27% Similarity=0.184 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhC
Q 024243 170 LLKAEEYCARAILMS 184 (270)
Q Consensus 170 ~~eA~e~~ekAIeld 184 (270)
+.+|+.++.+|++.|
T Consensus 3 l~~Ai~lv~~Av~~D 17 (75)
T cd02684 3 LEKAIALVVQAVKKD 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 443
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=42.07 E-value=43 Score=18.73 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=7.9
Q ss_pred hCCHHHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAI 181 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAI 181 (270)
.|++++|.+.|++-.
T Consensus 13 ~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 13 MGQFEEALEVFDEMR 27 (31)
T ss_pred cchHHHHHHHHHHHh
Confidence 455555555555544
No 444
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.88 E-value=70 Score=29.94 Aligned_cols=104 Identities=7% Similarity=0.025 Sum_probs=75.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHcCCH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSPNDGNVLSMYGDLI------WQSHKDA 205 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll------~~~~g~~ 205 (270)
=.+.-..++..+++-+|.+...|.-.-.++. .. .++..-..+-++.|+.|+.|...|...-.++ .. -.++
T Consensus 89 ~ldneld~~~~~lk~~PK~YqiW~HR~~~Le-~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N-~S~~ 166 (328)
T COG5536 89 LLDNELDFLDEALKDNPKNYQIWHHRQWMLE-LFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFN-FSDL 166 (328)
T ss_pred hhhcHHHHHHHHHhcCCchhhhhHHHHHHHH-hCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhcc-chhH
Confidence 4566678899999999999999987664444 33 5688888899999999999999986555443 11 3344
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCCc
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASH---AHFLWDADED 239 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~l---a~il~~~Ge~ 239 (270)
..-.++-..+++.|+-|..+|... -...+..|+.
T Consensus 167 k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v 203 (328)
T COG5536 167 KHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV 203 (328)
T ss_pred HHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc
Confidence 455677778889999988888777 3344445653
No 445
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=41.65 E-value=68 Score=21.15 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHH
Q 024243 140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAE 174 (270)
Q Consensus 140 ~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~ 174 (270)
..|.++|-.+|++...+.-||..+-+ +|+...|+
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e-~gdp~rae 36 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDE-HGDPARAE 36 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHHh
Confidence 45778899999999999999988886 79887664
No 446
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=40.32 E-value=78 Score=22.20 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhCC
Q 024243 170 LLKAEEYCARAILMSP 185 (270)
Q Consensus 170 ~~eA~e~~ekAIeldP 185 (270)
+++|.++..+|++.|-
T Consensus 2 ~~~A~~~~~~Av~~D~ 17 (69)
T PF04212_consen 2 LDKAIELIKKAVEADE 17 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567777777776554
No 447
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=40.08 E-value=56 Score=21.51 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHH
Q 024243 157 SNYARFLKEARGDLLKAEEYCARAIL 182 (270)
Q Consensus 157 ~~lA~~l~~~~Gd~~eA~e~~ekAIe 182 (270)
+.+|..+.. .||++.|.+.++..+.
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHH
Confidence 468877875 7999999999999995
No 448
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.48 E-value=1.7e+02 Score=28.08 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGN--VLSMY--GDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~--al~~l--A~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
..+..++ ..++|..|.+.++..+..-|.+.. .+..+ |..+|. .-++.+|.+++++.+..
T Consensus 136 ~~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 3444555 379999999999999986343333 33333 334677 88999999999987764
No 449
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.23 E-value=1.6e+02 Score=21.55 Aligned_cols=43 Identities=5% Similarity=0.030 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 024243 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~ 186 (270)
+.+|+..+++|++.+-. .++. +...-|.+|+++|..+++.+++
T Consensus 3 l~~A~~l~~~Ave~d~~-----~~y~----eA~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 3 LEQAAELIRLALEKEEE-----GDYE----AAFEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHHHH-----hhHH----HHHHHHHHHHHHHHHHhccCCC
Confidence 35667777777666543 1122 2234466677777777776653
No 450
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.46 E-value=1.3e+02 Score=28.26 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCCHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE-------ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS-HKDASR 207 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~-------~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~-~g~~e~ 207 (270)
..|++.-+..+..+|..-.+|+..=..+.- ..--+++-..++..+++-+|.+..+|...-+++-.. ..++.+
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 456677777788888887777554433332 112357788899999999999999998888776541 266888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
-+.+.++.++.|+.|..+|...-.++
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl 154 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVL 154 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeee
Confidence 89999999999999887765554444
No 451
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.40 E-value=1.5e+02 Score=28.71 Aligned_cols=73 Identities=11% Similarity=0.038 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 024243 157 SNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDASRAESYFDQAVKA-APDDCYVLASHAH 231 (270)
Q Consensus 157 ~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~-~P~~~~~~~~la~ 231 (270)
..+| ...+++|+..+|++.++...+-.|- --.++.++-..+++ ..-|.+....+-|.-++ -|+...+.+..+.
T Consensus 279 RRLA-MCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE-~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 279 RRLA-MCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLE-LQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HHHH-HHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCcchHHHHHHHHH
Confidence 3466 4444689999999999999988772 12334444444555 44455555555544443 3566666665554
No 452
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=36.31 E-value=1.9e+02 Score=28.52 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024243 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217 (270)
Q Consensus 150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~ 217 (270)
-+++..|..+|.... .+|+++-|+++|+++=.. ..+. +++...|+.++=..+.+.|..
T Consensus 344 ~~~~~~W~~Lg~~AL-~~g~~~lAe~c~~k~~d~--------~~L~-lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 344 LDDPEKWKQLGDEAL-RQGNIELAEECYQKAKDF--------SGLL-LLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp CSTHHHHHHHHHHHH-HTTBHHHHHHHHHHCT-H--------HHHH-HHHHHCT-HHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHH-HcCCHHHHHHHHHhhcCc--------cccH-HHHHHhCCHHHHHHHHHHHHH
Confidence 457889999996666 589999999999886431 2233 222236666555555555444
No 453
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=36.15 E-value=36 Score=36.67 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=5.8
Q ss_pred chhhhhhhhccc
Q 024243 36 DSLKSMTRTLSE 47 (270)
Q Consensus 36 ~~~~~~~~~~~~ 47 (270)
..+-+|.|-+|.
T Consensus 1127 arllnmiRdIs~ 1138 (1282)
T KOG0921|consen 1127 ARLLNMIRDISR 1138 (1282)
T ss_pred HHHHHHHHHhcc
Confidence 334455555544
No 454
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.97 E-value=74 Score=31.02 Aligned_cols=90 Identities=9% Similarity=-0.049 Sum_probs=54.3
Q ss_pred cCCChHHHHHHHHHH-------HHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243 131 NNHGNNSTDLYYQKM-------IQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (270)
Q Consensus 131 ~~gd~~eA~~~y~kA-------LeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~ 202 (270)
..|||..|++.++.. +...|. +...++.+| +.+.+.++|.+|+..|...+.---.....+.....-+-...
T Consensus 134 LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvG-FaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~ 212 (404)
T PF10255_consen 134 LLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVG-FAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQIN 212 (404)
T ss_pred hccCHHHHHHHhhccCcccchhhccCcchheehHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHH
Confidence 348999999887662 222232 345666777 54446899999999998887533322211111111122224
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 024243 203 KDASRAESYFDQAVKAAPD 221 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~~P~ 221 (270)
+..++...++--++.+.|.
T Consensus 213 K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 213 KKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hHHHHHHHHHHHHHHhCCC
Confidence 5667777777788888884
No 455
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=35.38 E-value=26 Score=31.66 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHcCCcHH
Q 024243 225 VLASHAHFLWDADEDEE 241 (270)
Q Consensus 225 ~~~~la~il~~~Ge~ee 241 (270)
+.-.|+.++-+-|..++
T Consensus 157 frdaLaelle~~G~~~~ 173 (263)
T KOG3074|consen 157 FRDALAELLEDFGEGDE 173 (263)
T ss_pred HHHHHHHHHHHhCCccc
Confidence 33445556666666555
No 456
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=34.92 E-value=87 Score=17.59 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHHH
Q 024243 202 HKDASRAESYFDQAV 216 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL 216 (270)
.|++++|..+|.+..
T Consensus 13 ~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 13 AGRVEEALELFKEML 27 (35)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555555544
No 457
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=34.09 E-value=18 Score=15.46 Aligned_cols=6 Identities=67% Similarity=1.608 Sum_probs=5.0
Q ss_pred ccccCC
Q 024243 9 PILNSW 14 (270)
Q Consensus 9 ~~~~~~ 14 (270)
|-.|||
T Consensus 2 pafnsw 7 (8)
T PF08260_consen 2 PAFNSW 7 (8)
T ss_pred cccccc
Confidence 778898
No 458
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=34.07 E-value=54 Score=31.87 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHh
Q 024243 170 LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK------------DASRAESYFDQAVKA 218 (270)
Q Consensus 170 ~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g------------~~e~A~~~~ekAL~~ 218 (270)
+.+|++|+++|.. -++|+.|...|.++.. .| -|.+|..++.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~-LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMID-LGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHH-HHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhh-hhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777765 4455666666555443 32 255666666666544
No 459
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=33.16 E-value=87 Score=32.90 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=67.7
Q ss_pred CCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 132 NHGNNSTDLYYQKMIQADPR----NPLLLSNYARFLKEA-RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~----n~~al~~lA~~l~~~-~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..++..+.--|..++.+-|. .+....+.+.++.+. .++|.+++.-+.-|+...|....++...+..|.. .+.++
T Consensus 66 K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a-l~k~d 144 (748)
T KOG4151|consen 66 KRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA-LNKLD 144 (748)
T ss_pred hhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH-HHHHH
Confidence 34666666667777777663 244444555444432 3788999999999999999888888887755544 66688
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
-|++.+.-....+|.+..+......
T Consensus 145 ~a~rdl~i~~~~~p~~~~~~eif~e 169 (748)
T KOG4151|consen 145 LAVRDLRIVEKMDPSNVSASEIFEE 169 (748)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHH
Confidence 8888877777888888555553333
No 460
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.58 E-value=3.5e+02 Score=23.82 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRN-------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLI 198 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n-------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll 198 (270)
-.+.|+-.++..-+-.+.. -.++--.|.+.+...|.+++|.+.+++.+. ||++......|+.++
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 3567777777655444432 122222333444457999999999999999 998888877777443
No 461
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=32.50 E-value=2.4e+02 Score=22.03 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=48.4
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHhCCCCHHHHHHHHHHHHHcC
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ---------AVKAAPDDCYVLASHAHFLWDAD 237 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek---------AL~~~P~~~~~~~~la~il~~~G 237 (270)
.+.......+++..+..++.++..+..+..++.. -+..+.+.++.. ++++...+ ..+.....+|.+.|
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~--~~~~~ll~~l~~~~~~yd~~~~~~~c~~~-~l~~~~~~l~~k~~ 96 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAK--YDPQKEIERLDNKSNHYDIEKVGKLCEKA-KLYEEAVELYKKDG 96 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH--HCHHHHHHHHHhccccCCHHHHHHHHHHc-CcHHHHHHHHHhhc
Confidence 4788999999999999988888888888866654 345566666662 33332221 12334444555666
Q ss_pred CcHHHHh
Q 024243 238 EDEEDEQ 244 (270)
Q Consensus 238 e~eea~~ 244 (270)
++++|-.
T Consensus 97 ~~~~Al~ 103 (140)
T smart00299 97 NFKDAIV 103 (140)
T ss_pred CHHHHHH
Confidence 6666653
No 462
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=31.14 E-value=65 Score=30.63 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~ 186 (270)
|+..-...+|+.+|++|++. +..|..-+|+..|+.|+++-|+
T Consensus 10 ~ekd~~~kkA~~l~~~av~~----------------Eq~G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 10 YEKDPLAKKAIALYEKAVLK----------------EQDGSLYDAINFYRDALQIVPD 51 (366)
T ss_pred cccchHHHHHHHHHHHHHHH----------------hhcCcHHHHHHHHHhhhcCCch
No 463
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.97 E-value=2.9e+02 Score=26.45 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------HHHHHHHHHH
Q 024243 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD------ASRAESYFDQ 214 (270)
Q Consensus 141 ~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~------~e~A~~~~ek 214 (270)
+++++|++ ..-| .-....++|++|..+|+.|++ +.+-.+-|+.+++ ..+..+|+++
T Consensus 6 ~l~kaI~l--------v~kA-~~eD~a~nY~eA~~lY~~ale---------YF~~~lKYE~~~~kaKd~IraK~~EYLdR 67 (439)
T KOG0739|consen 6 FLQKAIDL--------VKKA-IDEDNAKNYEEALRLYQNALE---------YFLHALKYEANNKKAKDSIRAKFTEYLDR 67 (439)
T ss_pred HHHHHHHH--------HHHH-hhhcchhchHHHHHHHHHHHH---------HHHHHHHhhhcChhHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 024243 215 AVKA 218 (270)
Q Consensus 215 AL~~ 218 (270)
|-++
T Consensus 68 AEkL 71 (439)
T KOG0739|consen 68 AEKL 71 (439)
T ss_pred HHHH
No 464
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.17 E-value=2.6e+02 Score=22.29 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=26.9
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024243 175 EYCARAILMS-PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCY 224 (270)
Q Consensus 175 e~~ekAIeld-P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~ 224 (270)
++++++-..+ +--+.++..++ +++.+.|+-+.|+.-|+.--.+.|....
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLG-lLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLG-LLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHH-HHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 3444444444 23344555666 4444467777777777666666666543
No 465
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.74 E-value=4.6e+02 Score=25.26 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC----CHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------h
Q 024243 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGN--VLSMYGDLIWQSHKDASRAESYFDQAVK-------A 218 (270)
Q Consensus 152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~----n~~--al~~lA~ll~~~~g~~e~A~~~~ekAL~-------~ 218 (270)
|+.-+..+.-...+..+|.++|++++++.++.--. ++- .....|.++.. .|+...+.+.++..-. +
T Consensus 73 Nplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~-i~DLk~~kk~ldd~~~~ld~~~~v 151 (380)
T KOG2908|consen 73 NPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLE-INDLKEIKKLLDDLKSMLDSLDGV 151 (380)
T ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcccCC
Confidence 44444445545555568999999999888764321 222 33445555555 8888888777765544 3
Q ss_pred CCCCHHHHHHHHHHH-HHcCCcHHHH
Q 024243 219 APDDCYVLASHAHFL-WDADEDEEDE 243 (270)
Q Consensus 219 ~P~~~~~~~~la~il-~~~Ge~eea~ 243 (270)
.|+--..++.++..| ...|++....
T Consensus 152 ~~~Vh~~fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 152 TSNVHSSFYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHH
Confidence 343333344444444 4445554443
No 466
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=29.29 E-value=2e+02 Score=23.87 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=23.5
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~l 197 (270)
.-+.+.|.++|+..+++.|++-.++..|-..
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~ 119 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMIQN 119 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHHHc
Confidence 5678999999999999999998888766643
No 467
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.28 E-value=3.4e+02 Score=26.10 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQA-----DPRN-PLLLSNYARFLKEARGDLLKAEEYCARAIL-------MSPNDGNVLSMYGDLI 198 (270)
Q Consensus 132 ~gd~~eA~~~y~kALel-----dP~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe-------ldP~n~~al~~lA~ll 198 (270)
.+|.++|++++++.++. .|+- .......|++..+ .||..++.+.+...-. ..|+-...++.++-.|
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~-i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLE-INDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 45889999999998765 2321 2333456766664 7999999888776654 2233334566667678
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 024243 199 WQSHKDASRAESYFDQAVK 217 (270)
Q Consensus 199 ~~~~g~~e~A~~~~ekAL~ 217 (270)
++..+++.......-+.+.
T Consensus 167 yk~~~d~a~yYr~~L~YL~ 185 (380)
T KOG2908|consen 167 YKKIGDFASYYRHALLYLG 185 (380)
T ss_pred HHHHHhHHHHHHHHHHHhc
Confidence 8878888766555444443
No 468
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=29.23 E-value=1.2e+02 Score=17.28 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHHHH
Q 024243 202 HKDASRAESYFDQAVK 217 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~ 217 (270)
.|++++|..+|+...+
T Consensus 14 ~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 14 AGDPDAALQLFDEMKE 29 (34)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5666666655555443
No 469
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=29.13 E-value=44 Score=34.40 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=6.1
Q ss_pred ccccCCCCCCCCCC
Q 024243 99 GGGIYGGGGNMCGG 112 (270)
Q Consensus 99 g~g~~g~gg~~~gg 112 (270)
.+.+||..++||||
T Consensus 614 ~~~~~~~~~~~~~~ 627 (653)
T PTZ00009 614 QAAGGGMPGGMPGG 627 (653)
T ss_pred hhccCCCCCCCCCC
Confidence 33333444445553
No 470
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=28.99 E-value=1.3e+02 Score=24.88 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=25.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 198 IWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 198 l~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
-|...-+.+.|..+|+..++.+|++-.++..+...+
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 333355678999999999999999988776665544
No 471
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.73 E-value=52 Score=32.31 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCChHHHHHHHHHHH--HhCCCC--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH
Q 024243 132 NHGNNSTDLYYQKMI--QADPRN--PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN 189 (270)
Q Consensus 132 ~gd~~eA~~~y~kAL--eldP~n--~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~ 189 (270)
++.|++|.....+.. +.+-++ +.+++.+|+.-. .+.+|..|.+++.+|+.+-|++..
T Consensus 222 n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIka-iqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 222 NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKA-IQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHH-hhcchhHHHHHHHHHHHhCcchhh
Confidence 456777777666654 222233 345556675544 579999999999999999998543
No 472
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=28.58 E-value=2.7e+02 Score=21.38 Aligned_cols=30 Identities=30% Similarity=0.242 Sum_probs=21.4
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
..||+.+|++...++-+..++..-.+..-|
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA 100 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSDNPLLNYLLAA 100 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 369999999999999776554444444334
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.57 E-value=3e+02 Score=21.88 Aligned_cols=108 Identities=12% Similarity=0.087 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCCH
Q 024243 136 NSTDLYYQKMIQADP---RNPLLLSNYARFLKEAR---GDLLKAEEYCARAILMSPNDGNV----LSMYGDLIWQSHKDA 205 (270)
Q Consensus 136 ~eA~~~y~kALeldP---~n~~al~~lA~~l~~~~---Gd~~eA~e~~ekAIeldP~n~~a----l~~lA~ll~~~~g~~ 205 (270)
++..+.|++.|+... +-...|..+-..+.+.. +.-..-..++++++....++... .+..-++.+. ...
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya--~~~ 79 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYA--DLS 79 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHH--TTB
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHH--HHc
Confidence 345667777777655 44577777776665543 23444556777777666443221 1122223332 333
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 206 SRAESYFDQAVKA--APDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 206 e~A~~~~ekAL~~--~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
..+.++|..+... .-+.+..+...|.++...|+.++|..-
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I 121 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEI 121 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3888888887754 557899999999999999999998753
No 474
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=28.10 E-value=2e+02 Score=29.46 Aligned_cols=75 Identities=9% Similarity=0.118 Sum_probs=53.1
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
....+.|....+.-+--.......+...|..+-. .++.++|-++|++.+..+|+ ..++.++.-+.+.|-..++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 3566666666666554444555556666655555 89999999999999999998 666777777777776555554
No 475
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=27.43 E-value=3.6e+02 Score=22.30 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=28.8
Q ss_pred hCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAILMSPND---------------GNVLSMYGDLIWQSHKDASRAESYFDQAV 216 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n---------------~~al~~lA~ll~~~~g~~e~A~~~~ekAL 216 (270)
.+++-.|+-.|++|+.+-.+- .....++| -+|+.+|+.+=.+.|++-|-
T Consensus 14 ~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA-~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 14 EADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLA-DFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred cccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHH-HHHHHcCChHHHHHHHHHHH
Confidence 466666666666665543211 11234666 46667888888888877443
No 476
>PRK11619 lytic murein transglycosylase; Provisional
Probab=27.19 E-value=5.5e+02 Score=26.57 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 170 LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 170 ~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.++|...+.++.... .+.+.+.....+... .++.+.+..++...-...-.....+|.+|+.+..+|+.+++...
T Consensus 295 ~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~-~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~ 368 (644)
T PRK11619 295 TDEQAKWRDDVIMRS-QSTSLLERRVRMALG-TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEI 368 (644)
T ss_pred CHHHHHHHHhccccc-CCcHHHHHHHHHHHH-ccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHH
Confidence 556666666555332 233333333334444 78888877777775444446778899999998889998888754
No 477
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=27.06 E-value=21 Score=35.92 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH--HhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAI--LMSPN-DGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAI--eldP~-n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
..|..|+++|-+..+....-|...|...+...|++..|...+.+.- .+.|. ........|.+.+. .+++++|+..+
T Consensus 6 ~aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~-~~~~~~Al~~L 84 (536)
T PF04348_consen 6 QAAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALA-QGDPEQALSLL 84 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHh-cCCHHHHHHHh
Confidence 4455666666666665444444444444445688888888887665 34443 23344455555555 78888888887
Q ss_pred HHH-HHhCCC--CHHHHHHHHHHHHHcCCcHHHHh
Q 024243 213 DQA-VKAAPD--DCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 213 ekA-L~~~P~--~~~~~~~la~il~~~Ge~eea~~ 244 (270)
... ...-|. ....+...+.++...|+.-++..
T Consensus 85 ~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~ 119 (536)
T PF04348_consen 85 NAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAAR 119 (536)
T ss_dssp -----------------------------------
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 741 111121 23344445666766666555543
No 478
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.99 E-value=1.5e+02 Score=24.00 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDC 223 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~ 223 (270)
.+|..+.. .|++++|..+|-+|+.+.|+-.
T Consensus 68 ~lGE~L~~-~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 68 QLGEQLLA-QGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHhCCCHH
Confidence 34544544 6777777777777777776433
No 479
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=26.13 E-value=3.7e+02 Score=24.23 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=53.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh----CCC---------CHHHHHHHHHHHHHH--cCCH---
Q 024243 144 KMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM----SPN---------DGNVLSMYGDLIWQS--HKDA--- 205 (270)
Q Consensus 144 kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel----dP~---------n~~al~~lA~ll~~~--~g~~--- 205 (270)
...+-+|.+...+...|..-+...++..-|...+..-++. .|+ ....+.++.+++... .++.
T Consensus 131 ~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F 210 (260)
T PF04190_consen 131 WSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLF 210 (260)
T ss_dssp HHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHH
T ss_pred HHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHH
Confidence 3445678888888888866666679999999877666655 332 111234444444332 2332
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
..-.+.|+..|+.+|.-...+..+|.+|+....
T Consensus 211 ~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 211 KKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 233444555666778888889999999987543
No 480
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.08 E-value=2.7e+02 Score=26.96 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=27.7
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhCCC-----CHHHHHHHH--HHHHHHcCCHHHHHHHHH
Q 024243 162 FLKEARGDLLKAEEYCARAILMSPN-----DGNVLSMYG--DLIWQSHKDASRAESYFD 213 (270)
Q Consensus 162 ~l~~~~Gd~~eA~e~~ekAIeldP~-----n~~al~~lA--~ll~~~~g~~e~A~~~~e 213 (270)
.++ ..++|..|.+.|+.+++..+. ....+..++ ..+|. .=++++|..+++
T Consensus 139 ~l~-n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~L~ 195 (380)
T TIGR02710 139 RAI-NAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWD-RFEHEEALDYLN 195 (380)
T ss_pred HHH-HhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHH-ccCHHHHHHHHh
Confidence 344 357777777777777766542 112222222 23455 566677777766
No 481
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.93 E-value=3.9e+02 Score=22.31 Aligned_cols=82 Identities=7% Similarity=0.001 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
..++|+.++..|.++..+--....-..-+..+..+...-..+....+.+-|.--| ...++...
T Consensus 98 ~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~-----------------~s~~~~~~ 160 (182)
T PF15469_consen 98 KKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP-----------------SSQEEFLK 160 (182)
T ss_pred HcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCHHHHHH
Q ss_pred HHHHHHHhCCCCHHHHHHH
Q 024243 211 YFDQAVKAAPDDCYVLASH 229 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~l 229 (270)
++...++++++.-.+|..+
T Consensus 161 ~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 161 LIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHhCCCCCCHHHHHH
No 482
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=25.46 E-value=1.3e+02 Score=33.20 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=10.5
Q ss_pred HHHHHHHHHcCCcHHHHhc
Q 024243 227 ASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 227 ~~la~il~~~Ge~eea~~~ 245 (270)
..++.-+..++++-+|.+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHHHHHHHHcccchhHHHH
Confidence 4555555566665555543
No 483
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=24.34 E-value=1e+02 Score=26.95 Aligned_cols=14 Identities=64% Similarity=1.206 Sum_probs=8.1
Q ss_pred ccccCCCCCCCCCC
Q 024243 99 GGGIYGGGGNMCGG 112 (270)
Q Consensus 99 g~g~~g~gg~~~gg 112 (270)
|+|+++++++|.++
T Consensus 6 gggg~~g~~gfRgg 19 (215)
T KOG3262|consen 6 GGGGGGGGGGFRGG 19 (215)
T ss_pred CCCCCCCCCCcccC
Confidence 45555556666654
No 484
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=23.52 E-value=1.9e+02 Score=23.39 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192 (270)
Q Consensus 158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~ 192 (270)
.+|..+. ..|++++|..+|-+||..-|+-.+.+.
T Consensus 68 ~lGE~L~-~~G~~~~aa~hf~nAl~V~~qP~~LL~ 101 (121)
T PF02064_consen 68 QLGEQLL-AQGDYEEAAEHFYNALKVCPQPAELLQ 101 (121)
T ss_dssp HHHHHHH-HTT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4676666 479999999999999999997665553
No 485
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=23.31 E-value=2.3e+02 Score=30.11 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
.++.++|...+. ...+++|.++|.+.-. ..++..++++ ..+|++ ++.....-|++...+-.+|..+
T Consensus 797 ~A~r~ig~~fa~-~~~We~A~~yY~~~~~--------~e~~~ecly~-le~f~~----LE~la~~Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAE-MMEWEEAAKYYSYCGD--------TENQIECLYR-LELFGE----LEVLARTLPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhccc--------hHhHHHHHHH-HHhhhh----HHHHHHhcCcccchHHHHHHHH
Confidence 455555544443 4556666666654321 1233334444 344433 3334444566666666666666
Q ss_pred HHcCCcHHHH
Q 024243 234 WDADEDEEDE 243 (270)
Q Consensus 234 ~~~Ge~eea~ 243 (270)
-..|.-++|-
T Consensus 863 ~svGMC~qAV 872 (1189)
T KOG2041|consen 863 TSVGMCDQAV 872 (1189)
T ss_pred HhhchHHHHH
Confidence 6666655554
No 486
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.05 E-value=2.4e+02 Score=26.63 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPL----LLSNYARFLKEARGDLLKAEEYCARAIL 182 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~----al~~lA~~l~~~~Gd~~eA~e~~ekAIe 182 (270)
.+.++|+..|++++++.+.-.. ++-.+-...+ .+++|++-.+.|.+.+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f-~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINF-RLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHH
Confidence 4889999999999999987542 3334443445 47999999999998875
No 487
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=22.80 E-value=1.2e+02 Score=18.90 Aligned_cols=11 Identities=9% Similarity=-0.184 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 024243 190 VLSMYGDLIWQ 200 (270)
Q Consensus 190 al~~lA~ll~~ 200 (270)
+.++||+.+..
T Consensus 3 t~FnyAw~Lv~ 13 (35)
T PF14852_consen 3 TQFNYAWGLVK 13 (35)
T ss_dssp HHHHHHHHHHH
T ss_pred chhHHHHHHhc
Confidence 34455554443
No 488
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.75 E-value=3.4e+02 Score=28.25 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH------------HHHHcCCHHHH
Q 024243 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNVLSMYGDL------------IWQSHKDASRA 208 (270)
Q Consensus 149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~n~~al~~lA~l------------l~~~~g~~e~A 208 (270)
.-++..=|..||.+.. ..+++..|.+++.+|-.+. -++.+.+..+|.. ++-..|+++++
T Consensus 662 e~~s~~Kw~~Lg~~al-~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAAL-SAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hhcchHHHHHHHHHHh-hcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHH
Confidence 4567788889997666 5799999999999986544 3566655555433 22236777777
Q ss_pred HHHHHHH
Q 024243 209 ESYFDQA 215 (270)
Q Consensus 209 ~~~~ekA 215 (270)
++++..-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 7766543
No 489
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.55 E-value=4.2e+02 Score=21.40 Aligned_cols=41 Identities=7% Similarity=0.024 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 173 AEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 173 A~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
+.++|.-..... -..+..|..+|..+.. .|++.+|.++|+.
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~-~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEA-AGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHc
Confidence 445555554444 3445555556643433 6777777766653
No 490
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=22.55 E-value=1.4e+02 Score=29.12 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD 169 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd 169 (270)
.-+..|+.|+++|.. -++|..|.++|-++.. .|+
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~-LGN 365 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMID-LGN 365 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHhh-hhc
Confidence 346778888888766 5667777777766553 454
No 491
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.50 E-value=2.4e+02 Score=27.56 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=35.1
Q ss_pred hCCHHHHHHHHHHH-------HHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARA-------ILMSP-NDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217 (270)
Q Consensus 167 ~Gd~~eA~e~~ekA-------IeldP-~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~ 217 (270)
.|||..|++.++.. ...-| -+..+++..|..+.+ +++|.+|+..|...|-
T Consensus 135 LGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylM-lrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 135 LGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLM-LRRYADAIRTFSQILL 192 (404)
T ss_pred ccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 58888888876543 22223 455667777744554 9999999999998763
No 492
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=22.34 E-value=2.3e+02 Score=27.12 Aligned_cols=63 Identities=10% Similarity=-0.035 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 024243 171 LKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD-CYVLASHAHFLW 234 (270)
Q Consensus 171 ~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~-~~~~~~la~il~ 234 (270)
++....+...|+.-|+ .+.+|..+|.+.-. .|.+++.+.+|++|+.....- ......+..|+-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~-~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPR-TGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4455556666665563 45677777766665 777778888888888776542 223333444444
No 493
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=22.02 E-value=3.5e+02 Score=20.33 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=19.0
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.++..++++-..++++.+|+||.++..|-
T Consensus 20 a~~~~~~l~~Al~~l~~~pdnP~~LA~~Q 48 (80)
T PRK15326 20 VDNLQTQVTEALDKLAAKPSDPALLAAYQ 48 (80)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34555666666667777788877765554
No 494
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.99 E-value=1.6e+02 Score=28.58 Aligned_cols=28 Identities=25% Similarity=0.158 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhC
Q 024243 156 LSNYARFLKEARGDLLKAEEYCARAILMS 184 (270)
Q Consensus 156 l~~lA~~l~~~~Gd~~eA~e~~ekAIeld 184 (270)
+...|+..+ ..+++++|...|..|..+-
T Consensus 44 lv~~G~~~~-~~~d~~~Avda~s~A~~l~ 71 (400)
T KOG4563|consen 44 LVQAGRRAL-CNNDIDKAVDALSEATELS 71 (400)
T ss_pred HHHhhhHHH-hcccHHHHHHHHHHHHHHH
Confidence 345555555 3688888888888777654
No 495
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.45 E-value=3.5e+02 Score=29.05 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHF 232 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~i 232 (270)
...+..||..++. +|++++|...|-++|..-. -+.+...+ .. ..+...=..|++...+..-.+.+.--.+-++
T Consensus 368 ~~i~~kYgd~Ly~-Kgdf~~A~~qYI~tI~~le-~s~Vi~kf----Ld-aq~IknLt~YLe~L~~~gla~~dhttlLLnc 440 (933)
T KOG2114|consen 368 AEIHRKYGDYLYG-KGDFDEATDQYIETIGFLE-PSEVIKKF----LD-AQRIKNLTSYLEALHKKGLANSDHTTLLLNC 440 (933)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHcccCC-hHHHHHHh----cC-HHHHHHHHHHHHHHHHcccccchhHHHHHHH
Q ss_pred HHHcCCcHH
Q 024243 233 LWDADEDEE 241 (270)
Q Consensus 233 l~~~Ge~ee 241 (270)
|.++++.+.
T Consensus 441 YiKlkd~~k 449 (933)
T KOG2114|consen 441 YIKLKDVEK 449 (933)
T ss_pred HHHhcchHH
No 496
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=21.38 E-value=4.3e+02 Score=23.21 Aligned_cols=102 Identities=15% Similarity=0.009 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
+...+..+- .....+||++.|-++|--.|...+=|...+..+|.-+....+.-....++++......|...........
T Consensus 40 Hl~~L~~lL-h~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~ 118 (199)
T PF04090_consen 40 HLRVLTDLL-HLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNR 118 (199)
T ss_pred HHHHHHHHH-HHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhh
Q ss_pred H------------------------HHHcCC--------cHHHHhccCCCCCCCC
Q 024243 232 F------------------------LWDADE--------DEEDEQVGEEPAPPSY 254 (270)
Q Consensus 232 i------------------------l~~~Ge--------~eea~~~~e~~~~~~p 254 (270)
. +....+ +++-.+.++++-..||
T Consensus 119 ~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PP 173 (199)
T PF04090_consen 119 RIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPP 173 (199)
T ss_pred hcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCC
No 497
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.26 E-value=5e+02 Score=24.95 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHH--------HHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH--HHhCCCCHHHHHHHHHHH
Q 024243 129 DPNNHGNNSTDLYY--------QKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA--ILMSPNDGNVLSMYGDLI 198 (270)
Q Consensus 129 Ye~~gd~~eA~~~y--------~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA--IeldP~n~~al~~lA~ll 198 (270)
|+..++|..|-..+ .++...+-.-.... .+|+.+.+ .++..+|+.+..|+ +..+-.|......+--++
T Consensus 113 YE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~i-riarlyLe-~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ 190 (399)
T KOG1497|consen 113 YEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCI-RIARLYLE-DDDKVEAEAYINRASILQAESSNEQLQIEYKVCY 190 (399)
T ss_pred HHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHH-HHHHHHHh-cCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH
Q ss_pred HHH---cCCHHHHHHHHHHHHHh
Q 024243 199 WQS---HKDASRAESYFDQAVKA 218 (270)
Q Consensus 199 ~~~---~g~~e~A~~~~ekAL~~ 218 (270)
.+. .++|-+|-..|.+....
T Consensus 191 ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 191 ARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 498
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=21.02 E-value=1.5e+02 Score=33.12 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CCCHHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNVLS 192 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~n~~al~ 192 (270)
|...+++++|+.+-+++.-+ .|+....+.+++ .+.....+...|...+.+|.++. |.-.....
T Consensus 983 ~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla-l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~ 1061 (1236)
T KOG1839|consen 983 SNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA-LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFI 1061 (1236)
T ss_pred HhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH-HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhh
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVKAA 219 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~ 219 (270)
++..++.- .++++.|+.+++.|++.+
T Consensus 1062 nle~l~~~-v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1062 NLELLLLG-VEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHH
No 499
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.92 E-value=5.7e+02 Score=24.57 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
..+|+.+.++|++.|-. .+|..++.. |..|++||..+|+...++..+-..+-.=+.+-+.+.++-..|++.
T Consensus 7 l~kaI~lv~kA~~eD~a-----~nY~eA~~l----Y~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~ 77 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNA-----KNYEEALRL----YQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKE 77 (439)
T ss_pred HHHHHHHHHHHhhhcch-----hchHHHHHH----HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=20.30 E-value=6.1e+02 Score=24.33 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 136 NSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
++....+..+++.-|+- +.+|..+| -+....|.++..+.+|++||.....-.+=+-..-.-++. +++..++
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~A-rl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~-~k~~eK~ 193 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLA-RLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK-MKSQEKS 193 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hhhhhhc
Done!