Query 024243
Match_columns 270
No_of_seqs 202 out of 2000
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 04:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 1.2E-17 4.1E-22 132.2 14.0 105 127-233 21-125 (126)
2 4ga2_A E3 SUMO-protein ligase 99.7 4.4E-18 1.5E-22 138.0 8.5 116 127-244 5-120 (150)
3 4ga2_A E3 SUMO-protein ligase 99.7 3.1E-17 1.1E-21 133.0 12.6 111 127-239 39-150 (150)
4 4gyw_A UDP-N-acetylglucosamine 99.7 9.9E-17 3.4E-21 162.3 13.1 120 127-248 17-136 (723)
5 2pl2_A Hypothetical conserved 99.7 3E-16 1E-20 134.0 13.7 113 130-244 16-139 (217)
6 2pl2_A Hypothetical conserved 99.7 3E-16 1E-20 134.0 11.4 119 127-248 47-176 (217)
7 3gyz_A Chaperone protein IPGC; 99.7 3.6E-17 1.2E-21 134.6 5.0 110 136-247 19-128 (151)
8 3urz_A Uncharacterized protein 99.7 4.6E-16 1.6E-20 132.0 11.8 111 129-241 14-140 (208)
9 3sz7_A HSC70 cochaperone (SGT) 99.7 1.4E-15 4.7E-20 123.4 13.0 108 127-236 19-126 (164)
10 3vtx_A MAMA; tetratricopeptide 99.6 1.1E-15 3.9E-20 125.0 12.4 117 127-245 13-163 (184)
11 3upv_A Heat shock protein STI1 99.6 2.7E-15 9.2E-20 116.0 13.8 107 128-236 13-125 (126)
12 4gyw_A UDP-N-acetylglucosamine 99.6 1.5E-15 5E-20 153.8 15.3 116 127-244 51-166 (723)
13 2vyi_A SGTA protein; chaperone 99.6 6.9E-15 2.4E-19 111.2 14.8 110 128-239 21-130 (131)
14 4i17_A Hypothetical protein; T 99.6 3.5E-15 1.2E-19 126.3 14.1 120 127-248 15-142 (228)
15 3gyz_A Chaperone protein IPGC; 99.6 3.2E-15 1.1E-19 122.9 13.2 94 128-223 45-138 (151)
16 4gco_A Protein STI-1; structur 99.6 6.8E-16 2.3E-20 122.0 8.7 103 144-248 4-106 (126)
17 2lni_A Stress-induced-phosphop 99.6 4E-15 1.4E-19 113.7 12.2 110 127-238 24-133 (133)
18 2vgx_A Chaperone SYCD; alterna 99.6 1.3E-15 4.4E-20 123.5 9.4 103 141-245 9-111 (148)
19 2h6f_A Protein farnesyltransfe 99.6 1E-15 3.4E-20 143.8 9.8 120 127-248 105-225 (382)
20 3vtx_A MAMA; tetratricopeptide 99.6 1.7E-14 5.9E-19 117.8 16.1 96 127-224 81-176 (184)
21 2xcb_A PCRH, regulatory protei 99.6 3.7E-15 1.3E-19 118.6 10.8 103 130-234 29-131 (142)
22 2vgx_A Chaperone SYCD; alterna 99.6 5.8E-15 2E-19 119.6 11.2 102 128-231 30-131 (148)
23 1na0_A Designed protein CTPR3; 99.6 4.9E-14 1.7E-18 105.6 15.1 108 128-237 18-125 (125)
24 2e2e_A Formate-dependent nitri 99.6 4.5E-15 1.6E-19 121.1 10.0 118 130-248 21-140 (177)
25 1a17_A Serine/threonine protei 99.6 2.8E-14 9.5E-19 113.2 14.3 115 128-244 22-138 (166)
26 1p5q_A FKBP52, FK506-binding p 99.6 1.1E-14 3.8E-19 133.2 13.6 112 130-243 158-284 (336)
27 2fo7_A Synthetic consensus TPR 99.6 4.8E-14 1.6E-18 106.4 14.4 117 128-246 10-126 (136)
28 2xcb_A PCRH, regulatory protei 99.6 7.5E-15 2.5E-19 116.9 9.9 107 140-248 5-111 (142)
29 3rkv_A Putative peptidylprolyl 99.6 5.3E-15 1.8E-19 119.7 9.1 110 127-238 19-147 (162)
30 1elw_A TPR1-domain of HOP; HOP 99.6 5.9E-14 2E-18 104.4 14.1 104 128-233 13-116 (118)
31 3as5_A MAMA; tetratricopeptide 99.6 9E-14 3.1E-18 111.0 16.1 118 128-247 51-168 (186)
32 4gcn_A Protein STI-1; structur 99.6 2.6E-14 8.9E-19 112.6 12.3 101 127-230 16-123 (127)
33 4i17_A Hypothetical protein; T 99.6 3.7E-15 1.3E-19 126.2 7.5 111 127-239 50-169 (228)
34 1hxi_A PEX5, peroxisome target 99.6 1.2E-14 4.2E-19 113.7 9.6 94 129-224 27-120 (121)
35 2h6f_A Protein farnesyltransfe 99.6 1.4E-14 4.7E-19 136.1 11.6 112 129-242 141-254 (382)
36 2fbn_A 70 kDa peptidylprolyl i 99.6 2.9E-14 9.8E-19 119.0 12.3 114 128-243 47-176 (198)
37 1wao_1 Serine/threonine protei 99.6 3.1E-14 1.1E-18 136.8 13.8 120 126-247 13-134 (477)
38 4eqf_A PEX5-related protein; a 99.6 8.5E-14 2.9E-18 125.2 15.8 119 127-247 185-305 (365)
39 3k9i_A BH0479 protein; putativ 99.5 8.8E-15 3E-19 112.7 7.9 106 132-239 3-111 (117)
40 3q49_B STIP1 homology and U bo 99.5 3.2E-14 1.1E-18 110.4 10.8 107 128-236 18-129 (137)
41 2pzi_A Probable serine/threoni 99.5 1.1E-14 3.8E-19 145.4 9.8 127 127-256 441-567 (681)
42 2q7f_A YRRB protein; TPR, prot 99.5 2.5E-13 8.5E-18 114.0 15.9 117 128-246 66-182 (243)
43 2dba_A Smooth muscle cell asso 99.5 9.6E-14 3.3E-18 108.0 12.4 106 127-234 36-144 (148)
44 1w3b_A UDP-N-acetylglucosamine 99.5 5.1E-14 1.7E-18 127.9 12.1 113 131-245 249-361 (388)
45 2xev_A YBGF; tetratricopeptide 99.5 3.2E-13 1.1E-17 103.6 14.6 109 128-238 11-125 (129)
46 2q7f_A YRRB protein; TPR, prot 99.5 2.1E-13 7.3E-18 114.4 14.9 120 127-248 99-218 (243)
47 3uq3_A Heat shock protein STI1 99.5 1.4E-13 4.7E-18 116.1 13.7 118 128-247 88-231 (258)
48 3as5_A MAMA; tetratricopeptide 99.5 1E-13 3.5E-18 110.7 11.9 119 128-248 17-135 (186)
49 1w3b_A UDP-N-acetylglucosamine 99.5 1.3E-13 4.4E-18 125.2 14.0 120 127-248 211-330 (388)
50 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4.7E-14 1.6E-18 134.4 11.6 115 128-244 277-406 (457)
51 1zu2_A Mitochondrial import re 99.5 9.8E-14 3.4E-18 116.0 11.7 100 131-232 14-134 (158)
52 3u4t_A TPR repeat-containing p 99.5 1.1E-13 3.8E-18 118.7 11.9 119 127-248 11-133 (272)
53 1fch_A Peroxisomal targeting s 99.5 2.1E-13 7E-18 121.8 13.7 117 126-245 189-307 (368)
54 3hym_B Cell division cycle pro 99.5 2.1E-13 7.1E-18 119.1 13.4 126 128-255 168-302 (330)
55 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.2E-13 4.2E-18 114.9 11.1 116 128-248 15-146 (213)
56 2r5s_A Uncharacterized protein 99.5 1.6E-14 5.5E-19 118.8 5.5 127 128-256 15-141 (176)
57 2ho1_A Type 4 fimbrial biogene 99.5 2.1E-13 7.3E-18 115.8 12.6 120 127-248 79-200 (252)
58 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-13 6.8E-18 116.7 12.3 114 131-246 17-134 (275)
59 2vq2_A PILW, putative fimbrial 99.5 4.9E-13 1.7E-17 110.4 14.2 113 130-244 19-134 (225)
60 2vsy_A XCC0866; transferase, g 99.5 2.8E-13 9.6E-18 130.9 14.6 117 128-246 32-151 (568)
61 3cv0_A Peroxisome targeting si 99.5 5.3E-13 1.8E-17 116.4 14.9 113 130-244 149-261 (327)
62 1elr_A TPR2A-domain of HOP; HO 99.5 2.9E-13 9.8E-18 102.4 11.5 108 128-238 13-127 (131)
63 3cv0_A Peroxisome targeting si 99.5 7E-13 2.4E-17 115.6 15.5 110 127-238 180-294 (327)
64 2vq2_A PILW, putative fimbrial 99.5 5.5E-13 1.9E-17 110.1 14.0 118 128-247 51-171 (225)
65 2ho1_A Type 4 fimbrial biogene 99.5 3.3E-13 1.1E-17 114.6 12.9 119 128-248 46-166 (252)
66 3upv_A Heat shock protein STI1 99.5 5.8E-13 2E-17 102.7 13.0 97 150-248 1-97 (126)
67 1ihg_A Cyclophilin 40; ppiase 99.5 1.4E-13 4.7E-18 128.3 11.1 116 128-245 232-363 (370)
68 4eqf_A PEX5-related protein; a 99.5 2E-13 6.7E-18 122.8 11.8 120 127-248 221-352 (365)
69 4abn_A Tetratricopeptide repea 99.5 1.5E-13 5.1E-18 131.3 11.5 119 127-248 110-246 (474)
70 4abn_A Tetratricopeptide repea 99.5 2.5E-13 8.5E-18 129.7 12.2 110 133-244 193-313 (474)
71 1fch_A Peroxisomal targeting s 99.5 5.9E-13 2E-17 118.8 13.8 96 126-223 224-319 (368)
72 3hym_B Cell division cycle pro 99.5 6.5E-13 2.2E-17 116.0 13.7 117 128-246 99-216 (330)
73 1xnf_A Lipoprotein NLPI; TPR, 99.5 1E-12 3.4E-17 112.3 14.5 116 128-246 52-167 (275)
74 2vsy_A XCC0866; transferase, g 99.5 5.3E-13 1.8E-17 129.0 13.8 114 133-248 3-116 (568)
75 2hr2_A Hypothetical protein; a 99.5 1.6E-13 5.3E-18 114.9 8.5 103 130-234 22-147 (159)
76 2kck_A TPR repeat; tetratricop 99.4 3.5E-13 1.2E-17 99.4 9.3 96 149-246 2-100 (112)
77 3uq3_A Heat shock protein STI1 99.4 5.8E-13 2E-17 112.2 11.7 120 127-248 46-198 (258)
78 3sz7_A HSC70 cochaperone (SGT) 99.4 1.2E-12 4.1E-17 105.9 13.1 97 149-247 7-103 (164)
79 3u4t_A TPR repeat-containing p 99.4 4.6E-13 1.6E-17 114.7 11.0 115 127-243 82-199 (272)
80 2kck_A TPR repeat; tetratricop 99.4 7.7E-13 2.6E-17 97.6 10.7 94 127-222 14-110 (112)
81 3q49_B STIP1 homology and U bo 99.4 3.1E-12 1E-16 99.0 14.6 99 147-247 3-101 (137)
82 3urz_A Uncharacterized protein 99.4 2E-13 7E-18 115.6 8.4 120 126-248 61-182 (208)
83 3qky_A Outer membrane assembly 99.4 1.1E-12 3.7E-17 113.5 12.8 119 129-248 25-173 (261)
84 2kat_A Uncharacterized protein 99.4 1E-12 3.5E-17 100.2 11.0 104 136-241 2-107 (115)
85 2yhc_A BAMD, UPF0169 lipoprote 99.4 5.9E-13 2E-17 113.7 10.8 121 127-248 49-209 (225)
86 3ieg_A DNAJ homolog subfamily 99.4 1.4E-12 4.9E-17 114.6 13.5 120 127-248 11-145 (359)
87 2e2e_A Formate-dependent nitri 99.4 9.8E-13 3.3E-17 107.1 11.6 104 127-231 52-157 (177)
88 3qou_A Protein YBBN; thioredox 99.4 1.2E-12 4E-17 116.7 12.8 113 130-244 128-240 (287)
89 3mkr_A Coatomer subunit epsilo 99.4 3.2E-12 1.1E-16 114.5 15.5 116 127-243 138-254 (291)
90 1hxi_A PEX5, peroxisome target 99.4 8E-13 2.7E-17 103.3 9.6 99 155-255 19-117 (121)
91 3fp2_A TPR repeat-containing p 99.4 3.5E-12 1.2E-16 119.5 15.6 118 127-246 284-401 (537)
92 4gcn_A Protein STI-1; structur 99.4 2.2E-12 7.6E-17 101.5 12.0 92 152-245 7-105 (127)
93 2pzi_A Probable serine/threoni 99.4 4.7E-13 1.6E-17 133.6 9.8 113 131-246 403-523 (681)
94 1qqe_A Vesicular transport pro 99.4 6.2E-13 2.1E-17 118.3 9.5 131 126-258 84-234 (292)
95 1p5q_A FKBP52, FK506-binding p 99.4 5.5E-14 1.9E-18 128.6 2.5 117 130-248 124-255 (336)
96 3ieg_A DNAJ homolog subfamily 99.4 1.5E-12 5.3E-17 114.4 11.6 119 128-248 46-179 (359)
97 2l6j_A TPR repeat-containing p 99.4 1.7E-12 5.9E-17 96.6 9.9 101 152-257 3-109 (111)
98 2if4_A ATFKBP42; FKBP-like, al 99.4 4.6E-13 1.6E-17 122.6 8.1 110 127-238 187-313 (338)
99 2ond_A Cleavage stimulation fa 99.4 1.9E-12 6.6E-17 115.6 12.0 122 126-248 106-228 (308)
100 2r5s_A Uncharacterized protein 99.4 7.9E-13 2.7E-17 108.5 8.7 117 127-245 48-166 (176)
101 3qky_A Outer membrane assembly 99.4 2.4E-12 8E-17 111.4 11.3 120 127-248 60-220 (261)
102 2y4t_A DNAJ homolog subfamily 99.4 5.5E-12 1.9E-16 115.7 13.6 119 128-248 220-354 (450)
103 2y4t_A DNAJ homolog subfamily 99.4 8.3E-12 2.8E-16 114.5 14.3 118 128-247 35-167 (450)
104 2xpi_A Anaphase-promoting comp 99.4 9.2E-12 3.1E-16 118.6 15.1 118 127-246 381-498 (597)
105 1na3_A Designed protein CTPR2; 99.4 1.2E-11 4.2E-16 88.9 12.1 85 151-237 7-91 (91)
106 2xpi_A Anaphase-promoting comp 99.3 3.4E-12 1.2E-16 121.6 11.6 118 129-248 451-575 (597)
107 1hh8_A P67PHOX, NCF-2, neutrop 99.3 8.5E-12 2.9E-16 103.6 12.5 103 127-231 45-163 (213)
108 2c2l_A CHIP, carboxy terminus 99.3 9.9E-13 3.4E-17 117.0 7.1 94 127-222 12-105 (281)
109 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 2.5E-13 8.6E-18 129.4 3.1 127 127-255 242-383 (457)
110 2lni_A Stress-induced-phosphop 99.3 1.4E-11 4.8E-16 93.7 11.7 98 149-248 12-109 (133)
111 2yhc_A BAMD, UPF0169 lipoprote 99.3 7E-12 2.4E-16 107.0 10.7 119 129-248 14-172 (225)
112 2ond_A Cleavage stimulation fa 99.3 1.2E-11 4E-16 110.5 12.6 112 136-248 33-159 (308)
113 3edt_B KLC 2, kinesin light ch 99.3 3.4E-12 1.2E-16 108.4 8.7 118 127-246 51-192 (283)
114 1elw_A TPR1-domain of HOP; HOP 99.3 1.9E-11 6.7E-16 90.5 11.6 95 152-248 3-97 (118)
115 3fp2_A TPR repeat-containing p 99.3 1.2E-11 4E-16 115.9 12.9 119 127-248 251-369 (537)
116 2vyi_A SGTA protein; chaperone 99.3 2.5E-11 8.5E-16 91.4 11.7 100 147-248 6-105 (131)
117 1na0_A Designed protein CTPR3; 99.3 8.3E-11 2.8E-15 87.7 14.3 99 148-248 3-102 (125)
118 2dba_A Smooth muscle cell asso 99.3 4.5E-11 1.6E-15 92.7 12.6 100 147-248 22-124 (148)
119 2fbn_A 70 kDa peptidylprolyl i 99.3 4.5E-12 1.5E-16 105.5 7.1 115 132-248 17-147 (198)
120 3mkr_A Coatomer subunit epsilo 99.3 2.9E-11 1E-15 108.2 12.8 94 132-227 179-273 (291)
121 3edt_B KLC 2, kinesin light ch 99.3 1.3E-11 4.3E-16 104.9 9.2 118 127-246 93-275 (283)
122 2fo7_A Synthetic consensus TPR 99.3 4.3E-11 1.5E-15 89.9 11.1 92 129-222 45-136 (136)
123 1qqe_A Vesicular transport pro 99.3 1.5E-11 5.3E-16 109.2 9.6 121 126-248 44-183 (292)
124 2gw1_A Mitochondrial precursor 99.3 3.7E-11 1.3E-15 111.4 12.5 117 128-245 347-471 (514)
125 2gw1_A Mitochondrial precursor 99.3 1.1E-11 3.9E-16 114.9 8.9 117 128-246 279-395 (514)
126 2hr2_A Hypothetical protein; a 99.2 6.5E-11 2.2E-15 98.9 12.5 92 153-246 11-125 (159)
127 2xev_A YBGF; tetratricopeptide 99.2 8E-11 2.7E-15 90.0 11.8 92 155-248 4-101 (129)
128 3rkv_A Putative peptidylprolyl 99.2 5.8E-11 2E-15 95.6 11.5 94 153-248 11-122 (162)
129 1elr_A TPR2A-domain of HOP; HO 99.2 6.5E-11 2.2E-15 89.2 10.6 96 151-248 2-104 (131)
130 3ma5_A Tetratricopeptide repea 99.2 7.2E-11 2.5E-15 88.8 10.8 88 148-237 2-91 (100)
131 1a17_A Serine/threonine protei 99.2 2.8E-10 9.7E-15 89.8 14.1 94 153-248 13-106 (166)
132 2qfc_A PLCR protein; TPR, HTH, 99.2 1.4E-10 4.6E-15 102.6 13.5 116 127-244 123-258 (293)
133 2c2l_A CHIP, carboxy terminus 99.2 1.3E-10 4.4E-15 103.2 13.3 96 150-247 1-96 (281)
134 2ifu_A Gamma-SNAP; membrane fu 99.2 2.8E-11 9.6E-16 108.3 7.6 128 127-258 84-229 (307)
135 3nf1_A KLC 1, kinesin light ch 99.2 4.6E-11 1.6E-15 103.2 8.0 118 127-246 119-301 (311)
136 4g1t_A Interferon-induced prot 99.2 1.8E-10 6.1E-15 106.7 12.5 117 132-248 151-272 (472)
137 3nf1_A KLC 1, kinesin light ch 99.2 4.9E-11 1.7E-15 103.1 8.0 118 127-246 77-218 (311)
138 3ro3_A PINS homolog, G-protein 99.2 7.7E-11 2.6E-15 91.3 8.3 116 128-245 18-151 (164)
139 1ouv_A Conserved hypothetical 99.2 6.9E-10 2.4E-14 96.0 15.1 110 128-245 15-136 (273)
140 3u3w_A Transcriptional activat 99.2 9.6E-11 3.3E-15 103.6 9.6 115 128-244 124-258 (293)
141 4g1t_A Interferon-induced prot 99.2 1.8E-10 6.1E-15 106.7 11.8 115 130-245 224-356 (472)
142 2ooe_A Cleavage stimulation fa 99.2 1.7E-10 5.9E-15 110.2 11.8 121 127-248 329-450 (530)
143 3k9i_A BH0479 protein; putativ 99.1 3.5E-11 1.2E-15 92.3 5.1 80 167-247 3-85 (117)
144 4a1s_A PINS, partner of inscut 99.1 9E-11 3.1E-15 106.5 8.6 109 128-238 57-181 (411)
145 3ulq_A Response regulator aspa 99.1 1.1E-10 3.7E-15 106.4 9.1 118 127-246 151-287 (383)
146 2l6j_A TPR repeat-containing p 99.1 1.2E-11 4.1E-16 92.0 1.7 86 127-214 12-103 (111)
147 2kc7_A BFR218_protein; tetratr 99.1 5.4E-11 1.8E-15 87.7 4.8 67 158-226 5-72 (99)
148 3gw4_A Uncharacterized protein 99.1 1.7E-10 5.8E-15 94.3 7.1 117 127-245 34-169 (203)
149 3ulq_A Response regulator aspa 99.1 1.3E-10 4.6E-15 105.8 7.1 118 127-246 111-247 (383)
150 3ro2_A PINS homolog, G-protein 99.1 2.2E-10 7.4E-15 99.0 8.1 110 127-238 13-138 (338)
151 1ouv_A Conserved hypothetical 99.1 2.9E-09 9.8E-14 92.1 15.0 105 132-244 55-171 (273)
152 1dce_A Protein (RAB geranylger 99.1 2.4E-09 8.2E-14 105.3 16.2 113 134-248 44-169 (567)
153 3qou_A Protein YBBN; thioredox 99.1 5.8E-10 2E-14 99.1 10.6 99 147-247 111-209 (287)
154 2qfc_A PLCR protein; TPR, HTH, 99.1 4.6E-09 1.6E-13 92.7 15.9 116 129-246 85-219 (293)
155 3sf4_A G-protein-signaling mod 99.0 2.3E-10 8E-15 102.5 7.3 117 127-245 195-329 (406)
156 3sf4_A G-protein-signaling mod 99.0 3.9E-10 1.3E-14 101.0 8.7 110 127-238 17-142 (406)
157 1na3_A Designed protein CTPR2; 99.0 1.2E-09 4.1E-14 78.2 9.5 73 127-200 17-89 (91)
158 2if4_A ATFKBP42; FKBP-like, al 99.0 2.2E-10 7.6E-15 104.7 5.7 113 141-255 167-296 (338)
159 3bee_A Putative YFRE protein; 99.0 2E-09 6.8E-14 81.5 10.0 75 149-224 2-78 (93)
160 2ooe_A Cleavage stimulation fa 99.0 1E-09 3.6E-14 104.8 10.5 112 136-248 255-381 (530)
161 3dra_A Protein farnesyltransfe 99.0 6E-09 2E-13 95.3 14.9 109 134-244 48-167 (306)
162 4a1s_A PINS, partner of inscut 99.0 2.4E-10 8.3E-15 103.7 5.3 116 127-244 231-364 (411)
163 2ifu_A Gamma-SNAP; membrane fu 99.0 6E-10 2E-14 99.6 7.6 118 126-246 43-178 (307)
164 3ro2_A PINS homolog, G-protein 99.0 4.1E-10 1.4E-14 97.2 6.1 117 128-246 192-326 (338)
165 2kc7_A BFR218_protein; tetratr 99.0 5.9E-09 2E-13 76.5 11.5 86 128-223 9-95 (99)
166 3q15_A PSP28, response regulat 99.0 8.7E-10 3E-14 100.5 8.1 118 127-246 149-284 (378)
167 3rjv_A Putative SEL1 repeat pr 99.0 1.3E-09 4.5E-14 92.5 8.6 110 129-244 28-150 (212)
168 3rjv_A Putative SEL1 repeat pr 99.0 3.6E-09 1.2E-13 89.8 11.0 109 133-244 67-189 (212)
169 2kat_A Uncharacterized protein 99.0 4.3E-09 1.5E-13 79.7 10.3 74 172-246 3-76 (115)
170 1zu2_A Mitochondrial import re 99.0 3E-10 1E-14 94.8 3.9 81 166-247 14-115 (158)
171 1ihg_A Cyclophilin 40; ppiase 99.0 8.9E-10 3E-14 102.4 7.5 94 153-248 223-332 (370)
172 3gw4_A Uncharacterized protein 99.0 3.6E-09 1.2E-13 86.3 10.1 113 131-246 4-130 (203)
173 3dra_A Protein farnesyltransfe 98.9 9E-09 3.1E-13 94.1 13.7 106 134-241 125-238 (306)
174 3u3w_A Transcriptional activat 98.9 3.6E-09 1.2E-13 93.4 10.0 113 131-245 87-218 (293)
175 1dce_A Protein (RAB geranylger 98.9 7.6E-09 2.6E-13 101.7 12.7 100 135-236 89-191 (567)
176 1wao_1 Serine/threonine protei 98.9 6.3E-10 2.2E-14 106.7 4.3 94 153-248 6-99 (477)
177 3q15_A PSP28, response regulat 98.9 2.2E-09 7.6E-14 97.8 6.6 117 128-246 110-245 (378)
178 1pc2_A Mitochondria fission pr 98.9 2.6E-08 8.9E-13 82.5 12.1 101 133-235 12-117 (152)
179 3q7a_A Farnesyltransferase alp 98.8 2.8E-08 9.4E-13 92.6 12.3 106 134-240 69-176 (349)
180 3dss_A Geranylgeranyl transfer 98.8 7.2E-08 2.5E-12 89.2 14.8 102 134-237 89-193 (331)
181 1hz4_A MALT regulatory protein 98.8 9.2E-09 3.1E-13 92.7 8.6 118 128-247 62-198 (373)
182 1hz4_A MALT regulatory protein 98.8 1.6E-08 5.4E-13 91.1 9.8 117 129-247 24-159 (373)
183 3dss_A Geranylgeranyl transfer 98.8 8.2E-08 2.8E-12 88.8 14.7 107 136-244 47-166 (331)
184 3n71_A Histone lysine methyltr 98.8 7.1E-09 2.4E-13 100.5 7.9 112 130-243 320-455 (490)
185 1klx_A Cysteine rich protein B 98.8 1.3E-07 4.6E-12 75.2 12.8 104 133-245 9-119 (138)
186 1klx_A Cysteine rich protein B 98.7 1.8E-07 6.3E-12 74.4 13.0 99 127-231 33-137 (138)
187 4f3v_A ESX-1 secretion system 98.7 3.9E-09 1.3E-13 95.7 3.0 116 129-247 112-232 (282)
188 3q7a_A Farnesyltransferase alp 98.7 5.6E-08 1.9E-12 90.5 10.9 104 134-238 104-216 (349)
189 3ro3_A PINS homolog, G-protein 98.7 3.9E-08 1.3E-12 75.8 7.5 93 127-221 57-161 (164)
190 3e4b_A ALGK; tetratricopeptide 98.7 8E-08 2.8E-12 90.9 11.1 105 134-245 194-309 (452)
191 3u64_A Protein TP_0956; tetrat 98.7 5.2E-08 1.8E-12 88.7 9.3 89 133-221 177-272 (301)
192 3qww_A SET and MYND domain-con 98.7 1E-07 3.5E-12 91.0 10.8 98 131-230 310-428 (433)
193 3ma5_A Tetratricopeptide repea 98.7 9.6E-08 3.3E-12 71.4 8.5 63 183-246 2-64 (100)
194 3e4b_A ALGK; tetratricopeptide 98.6 1.2E-07 4.3E-12 89.6 11.1 102 133-244 231-343 (452)
195 2xm6_A Protein corresponding t 98.6 4.4E-07 1.5E-11 85.7 14.3 105 133-244 310-424 (490)
196 2v5f_A Prolyl 4-hydroxylase su 98.6 6E-07 2E-11 68.1 12.0 78 152-231 4-88 (104)
197 2xm6_A Protein corresponding t 98.6 8.2E-07 2.8E-11 83.8 15.0 106 132-244 56-172 (490)
198 3qwp_A SET and MYND domain-con 98.5 3.1E-07 1.1E-11 87.3 9.2 97 131-229 299-416 (429)
199 3ly7_A Transcriptional activat 98.4 1.2E-06 4.1E-11 82.2 11.4 114 133-248 213-335 (372)
200 4f3v_A ESX-1 secretion system 98.4 5.3E-07 1.8E-11 81.6 8.4 103 128-233 144-251 (282)
201 3mv2_B Coatomer subunit epsilo 98.3 9.9E-07 3.4E-11 80.9 8.1 117 126-247 107-235 (310)
202 2v5f_A Prolyl 4-hydroxylase su 98.3 2.4E-06 8.1E-11 64.8 8.3 67 128-195 14-87 (104)
203 3u64_A Protein TP_0956; tetrat 98.3 1.6E-06 5.5E-11 78.9 8.5 85 169-254 178-271 (301)
204 1nzn_A CGI-135 protein, fissio 98.2 1.6E-05 5.4E-10 63.7 11.4 99 134-234 16-119 (126)
205 3bee_A Putative YFRE protein; 98.2 3.6E-06 1.2E-10 63.3 6.8 64 184-248 2-68 (93)
206 4e6h_A MRNA 3'-END-processing 98.1 1.5E-05 5E-10 80.1 12.6 108 136-245 326-456 (679)
207 3mv2_B Coatomer subunit epsilo 98.1 2.3E-06 8E-11 78.4 5.8 110 125-238 142-270 (310)
208 4b4t_Q 26S proteasome regulato 98.1 7.8E-06 2.7E-10 74.4 9.2 115 128-244 104-237 (434)
209 4b4t_Q 26S proteasome regulato 98.1 4.5E-06 1.5E-10 76.0 7.0 117 127-245 63-197 (434)
210 3ly7_A Transcriptional activat 98.1 2.5E-05 8.6E-10 73.2 11.5 81 146-230 270-350 (372)
211 3qww_A SET and MYND domain-con 98.0 7.7E-06 2.6E-10 78.0 7.6 78 167-245 311-404 (433)
212 3n71_A Histone lysine methyltr 98.0 1.3E-05 4.4E-10 77.5 8.9 79 166-245 321-415 (490)
213 4e6h_A MRNA 3'-END-processing 98.0 2.5E-05 8.6E-10 78.4 10.9 121 127-248 386-529 (679)
214 1xi4_A Clathrin heavy chain; a 97.9 3.3E-05 1.1E-09 82.9 10.2 105 128-245 1085-1189(1630)
215 1xi4_A Clathrin heavy chain; a 97.8 0.0001 3.5E-09 79.2 12.5 105 126-245 1112-1243(1630)
216 3qwp_A SET and MYND domain-con 97.8 2.6E-05 8.8E-10 74.1 7.1 79 166-245 299-393 (429)
217 1pc2_A Mitochondria fission pr 97.8 2.3E-05 8E-10 64.7 5.1 87 168-255 12-103 (152)
218 2uy1_A Cleavage stimulation fa 97.7 0.00041 1.4E-08 66.6 13.4 51 137-189 197-247 (493)
219 1y8m_A FIS1; mitochondria, unk 97.6 0.00089 3E-08 54.6 12.5 96 138-234 21-122 (144)
220 1b89_A Protein (clathrin heavy 97.6 0.00015 5.3E-09 69.4 8.2 97 129-244 132-228 (449)
221 3o48_A Mitochondria fission 1 97.5 0.00058 2E-08 55.0 9.2 84 152-236 39-125 (134)
222 4h7y_A Dual specificity protei 97.5 0.00088 3E-08 55.3 10.3 99 136-238 36-142 (161)
223 4h7y_A Dual specificity protei 97.5 0.00062 2.1E-08 56.2 9.2 97 146-245 6-116 (161)
224 1b89_A Protein (clathrin heavy 97.2 0.0016 5.5E-08 62.3 10.1 96 130-236 159-254 (449)
225 3ffl_A Anaphase-promoting comp 97.1 0.0013 4.4E-08 54.9 7.8 52 132-184 33-93 (167)
226 2uy1_A Cleavage stimulation fa 97.1 0.0034 1.2E-07 60.2 11.3 108 131-244 298-405 (493)
227 3ffl_A Anaphase-promoting comp 96.8 0.0049 1.7E-07 51.4 8.2 87 160-248 27-147 (167)
228 4gns_B Protein CSD3, chitin bi 96.7 0.011 3.8E-07 60.0 11.7 109 135-244 265-392 (754)
229 1nzn_A CGI-135 protein, fissio 96.6 0.0033 1.1E-07 50.1 6.0 62 133-195 52-115 (126)
230 4g26_A Pentatricopeptide repea 96.5 0.079 2.7E-06 50.8 15.9 112 132-246 83-198 (501)
231 1y8m_A FIS1; mitochondria, unk 96.4 0.013 4.4E-07 47.7 8.5 62 133-195 56-118 (144)
232 3o48_A Mitochondria fission 1 96.4 0.0092 3.2E-07 48.0 7.4 62 133-195 57-119 (134)
233 1zbp_A Hypothetical protein VP 96.2 0.066 2.2E-06 47.9 12.8 63 132-195 10-72 (273)
234 1ya0_A SMG-7 transcript varian 95.9 0.042 1.5E-06 53.1 10.7 80 155-236 154-233 (497)
235 4g26_A Pentatricopeptide repea 95.7 0.36 1.2E-05 46.2 16.0 113 131-245 38-162 (501)
236 2ff4_A Probable regulatory pro 95.5 0.12 4.2E-06 47.8 11.9 99 133-234 129-256 (388)
237 4gns_B Protein CSD3, chitin bi 93.7 0.18 6.2E-06 51.1 8.8 59 155-215 339-397 (754)
238 1zbp_A Hypothetical protein VP 93.5 0.35 1.2E-05 43.2 9.3 63 166-229 9-71 (273)
239 3mkq_A Coatomer beta'-subunit; 93.3 0.6 2.1E-05 45.5 11.4 94 149-243 677-803 (814)
240 1ya0_A SMG-7 transcript varian 92.7 0.23 8E-06 47.9 7.4 65 133-198 166-230 (497)
241 3mkq_A Coatomer beta'-subunit; 92.6 0.61 2.1E-05 45.5 10.4 68 167-240 665-740 (814)
242 3mkq_B Coatomer subunit alpha; 90.3 1.2 4.1E-05 37.2 8.4 43 132-180 18-60 (177)
243 4b4t_R RPN7, 26S proteasome re 90.1 1.1 3.6E-05 42.0 8.8 93 127-220 139-239 (429)
244 3txn_A 26S proteasome regulato 86.8 2 6.7E-05 40.2 8.2 93 127-220 107-212 (394)
245 2ff4_A Probable regulatory pro 86.4 1.4 4.8E-05 40.6 7.0 51 131-182 183-233 (388)
246 4fhn_B Nucleoporin NUP120; pro 84.6 4.4 0.00015 42.6 10.4 100 145-246 834-961 (1139)
247 3kae_A CDC27, possible protein 80.8 25 0.00084 29.7 11.4 57 166-223 74-148 (242)
248 3mkq_B Coatomer subunit alpha; 79.9 8.5 0.00029 31.9 8.5 54 151-214 6-59 (177)
249 4b4t_R RPN7, 26S proteasome re 79.5 1.9 6.6E-05 40.2 4.9 109 134-244 109-229 (429)
250 3txn_A 26S proteasome regulato 78.3 12 0.00039 34.9 9.8 85 158-244 104-202 (394)
251 3kae_A CDC27, possible protein 77.5 31 0.0011 29.1 11.4 115 129-244 72-229 (242)
252 4b4t_P 26S proteasome regulato 77.5 18 0.00062 33.7 11.1 90 127-218 145-247 (445)
253 3spa_A Mtrpol, DNA-directed RN 77.4 27 0.00092 36.9 13.0 83 133-219 141-231 (1134)
254 3spa_A Mtrpol, DNA-directed RN 77.1 41 0.0014 35.5 14.3 88 152-242 126-220 (1134)
255 1wy6_A Hypothetical protein ST 73.0 23 0.00079 28.8 8.9 80 134-219 76-155 (172)
256 4b4t_S RPN3, 26S proteasome re 72.5 2.9 0.0001 40.5 4.2 66 153-222 231-303 (523)
257 1qsa_A Protein (soluble lytic 72.1 41 0.0014 33.0 12.4 109 134-244 229-340 (618)
258 2o8p_A 14-3-3 domain containin 72.1 23 0.0008 30.5 9.4 48 135-182 141-196 (227)
259 2v6y_A AAA family ATPase, P60 67.2 11 0.00037 27.1 5.3 14 171-184 9-22 (83)
260 2w2u_A Hypothetical P60 katani 67.1 11 0.00037 27.2 5.3 15 167-181 32-46 (83)
261 2br9_A 14-3-3E, 14-3-3 protein 66.8 15 0.00053 31.7 7.2 46 136-181 147-200 (234)
262 3iqu_A 14-3-3 protein sigma; s 65.1 19 0.00066 31.2 7.4 47 135-181 149-203 (236)
263 2npm_A 14-3-3 domain containin 65.1 17 0.00058 32.0 7.2 46 136-181 173-225 (260)
264 2v6y_A AAA family ATPase, P60 65.0 12 0.0004 26.9 5.1 31 136-182 9-39 (83)
265 3esl_A Checkpoint serine/threo 64.4 44 0.0015 28.2 9.4 80 140-222 58-148 (202)
266 2w2u_A Hypothetical P60 katani 64.0 12 0.00043 26.9 5.1 13 171-183 17-29 (83)
267 3uzd_A 14-3-3 protein gamma; s 63.7 19 0.00065 31.4 7.2 23 193-215 178-200 (248)
268 1o9d_A 14-3-3-like protein C; 63.5 19 0.00065 31.7 7.2 24 158-181 182-205 (260)
269 4fhn_B Nucleoporin NUP120; pro 63.0 19 0.00064 37.7 8.3 109 127-238 850-986 (1139)
270 4b4t_S RPN3, 26S proteasome re 62.7 11 0.00036 36.6 5.8 113 132-248 149-295 (523)
271 1wfd_A Hypothetical protein 15 62.4 18 0.0006 26.6 5.8 45 133-186 10-54 (93)
272 2npm_A 14-3-3 domain containin 61.5 53 0.0018 28.8 9.7 48 171-218 173-227 (260)
273 3ubw_A 14-3-3E, 14-3-3 protein 61.5 24 0.00082 31.1 7.4 46 136-181 173-226 (261)
274 1wy6_A Hypothetical protein ST 61.0 24 0.00082 28.7 6.7 52 132-184 104-155 (172)
275 4b4t_P 26S proteasome regulato 60.5 1.1E+02 0.0036 28.4 12.5 88 155-244 139-239 (445)
276 1o9d_A 14-3-3-like protein C; 59.6 60 0.002 28.4 9.7 48 171-218 152-207 (260)
277 3uzd_A 14-3-3 protein gamma; s 58.6 30 0.001 30.1 7.5 9 168-176 188-196 (248)
278 4gq2_M Nucleoporin NUP120; bet 56.6 47 0.0016 34.1 9.8 79 144-224 831-933 (950)
279 4a5x_A MITD1, MIT domain-conta 55.6 20 0.0007 25.9 5.1 13 136-148 14-26 (86)
280 1wfd_A Hypothetical protein 15 55.3 22 0.00077 26.0 5.3 15 170-184 12-26 (93)
281 4a5x_A MITD1, MIT domain-conta 54.9 21 0.00071 25.8 5.0 14 168-181 30-43 (86)
282 3efz_A 14-3-3 protein; 14-3-3, 52.5 23 0.00077 31.3 5.7 25 193-217 201-225 (268)
283 1qsa_A Protein (soluble lytic 51.0 82 0.0028 30.8 10.1 80 135-217 268-347 (618)
284 2o8p_A 14-3-3 domain containin 50.5 83 0.0028 27.0 8.9 51 168-218 139-197 (227)
285 3ax2_A Mitochondrial import re 50.2 42 0.0014 23.7 5.8 24 167-190 30-53 (73)
286 2cpt_A SKD1 protein, vacuolar 49.2 84 0.0029 23.9 8.0 15 134-148 14-28 (117)
287 2i7u_A Four-alpha-helix bundle 48.9 3.4 0.00012 27.3 -0.2 6 96-101 25-30 (62)
288 3re2_A Predicted protein; meni 48.7 48 0.0016 30.9 7.4 56 173-229 276-342 (472)
289 2v6x_A Vacuolar protein sortin 48.2 35 0.0012 24.2 5.3 18 165-182 24-41 (85)
290 4gq4_A Menin; tumor suppressor 47.3 1.4E+02 0.0049 28.2 10.4 80 151-232 260-352 (489)
291 2br9_A 14-3-3E, 14-3-3 protein 47.0 56 0.0019 28.1 7.3 47 171-217 147-201 (234)
292 3esl_A Checkpoint serine/threo 46.8 1E+02 0.0035 25.9 8.7 56 135-191 95-152 (202)
293 2wvi_A Mitotic checkpoint seri 45.4 1.2E+02 0.0041 24.5 9.1 75 139-221 43-128 (164)
294 3iqu_A 14-3-3 protein sigma; s 45.1 61 0.0021 28.0 7.2 47 171-217 150-204 (236)
295 3t5x_A PCI domain-containing p 44.7 54 0.0019 27.2 6.8 85 153-246 14-102 (203)
296 3ax2_A Mitochondrial import re 42.6 61 0.0021 22.8 5.7 38 192-230 21-58 (73)
297 3u84_A Menin; MLL, JUND, ledgf 40.1 74 0.0025 30.2 7.3 57 172-229 297-364 (550)
298 2ijq_A Hypothetical protein; s 39.7 1.4E+02 0.0048 24.1 8.3 57 160-218 39-104 (161)
299 4a1g_A Mitotic checkpoint seri 39.3 65 0.0022 25.9 6.1 81 138-226 47-138 (152)
300 2cfu_A SDSA1; SDS-hydrolase, l 38.3 58 0.002 32.0 6.8 33 167-199 462-494 (658)
301 2cpt_A SKD1 protein, vacuolar 38.0 44 0.0015 25.5 4.7 17 166-182 30-46 (117)
302 2dl1_A Spartin; SPG20, MIT, st 37.8 21 0.00073 27.6 2.8 18 168-185 17-34 (116)
303 2wvi_A Mitotic checkpoint seri 37.6 69 0.0024 26.0 6.1 53 138-191 79-133 (164)
304 2rpa_A Katanin P60 ATPase-cont 37.0 32 0.0011 24.6 3.5 24 158-182 17-40 (78)
305 2v6x_A Vacuolar protein sortin 36.2 56 0.0019 23.1 4.8 44 134-186 9-52 (85)
306 2cfu_A SDSA1; SDS-hydrolase, l 36.1 69 0.0023 31.5 6.9 47 191-238 452-498 (658)
307 3ubw_A 14-3-3E, 14-3-3 protein 35.1 52 0.0018 28.9 5.3 47 171-217 173-227 (261)
308 2ca5_A MXIH; transport protein 34.9 20 0.00068 26.2 2.1 28 168-195 24-51 (85)
309 3t5x_A PCI domain-containing p 34.9 91 0.0031 25.8 6.6 27 127-153 22-48 (203)
310 2wpv_A GET4, UPF0363 protein Y 34.2 79 0.0027 28.2 6.5 67 151-218 132-217 (312)
311 4b4t_O 26S proteasome regulato 33.9 2.2E+02 0.0074 25.8 9.6 86 132-218 89-198 (393)
312 4a1g_A Mitotic checkpoint seri 33.9 1.7E+02 0.0059 23.3 7.8 37 208-244 84-122 (152)
313 4aez_C MAD3, mitotic spindle c 33.2 2.3E+02 0.0077 24.1 10.6 76 139-222 97-183 (223)
314 2dl1_A Spartin; SPG20, MIT, st 32.9 31 0.0011 26.6 3.0 18 133-150 17-34 (116)
315 1om2_A Protein (mitochondrial 32.3 55 0.0019 24.3 4.2 34 157-191 24-57 (95)
316 2crb_A Nuclear receptor bindin 30.8 86 0.0029 23.3 5.0 28 153-181 15-42 (97)
317 2czy_A Paired amphipathic heli 30.5 1.4E+02 0.0047 20.8 6.1 27 171-197 5-31 (77)
318 4aez_C MAD3, mitotic spindle c 29.6 1E+02 0.0035 26.3 6.1 53 137-190 132-186 (223)
319 1g1e_B SIN3A; four-helix bundl 27.8 1.7E+02 0.0058 21.0 6.7 27 134-160 9-35 (89)
320 3efz_A 14-3-3 protein; 14-3-3, 27.6 70 0.0024 28.2 4.8 11 168-178 211-221 (268)
321 2crb_A Nuclear receptor bindin 27.2 1E+02 0.0035 22.9 4.8 22 193-215 20-41 (97)
322 2ca5_A MXIH; transport protein 26.7 44 0.0015 24.3 2.7 32 203-234 24-55 (85)
323 3lew_A SUSD-like carbohydrate 26.3 1.9E+02 0.0066 26.9 8.1 49 171-220 175-234 (495)
324 1om2_A Protein (mitochondrial 25.5 84 0.0029 23.3 4.2 28 193-221 25-52 (95)
325 2cr7_A Paired amphipathic heli 24.5 1.2E+02 0.004 21.5 4.7 62 134-195 9-70 (80)
326 4gq2_M Nucleoporin NUP120; bet 22.9 1.7E+02 0.006 29.9 7.5 80 159-244 816-918 (950)
327 3kez_A Putative sugar binding 22.2 2.1E+02 0.0071 26.4 7.3 47 171-218 171-225 (461)
328 3myv_A SUSD superfamily protei 22.0 2.4E+02 0.0082 25.9 7.7 47 171-218 165-219 (454)
329 3lew_A SUSD-like carbohydrate 21.4 2.3E+02 0.0079 26.4 7.5 49 135-184 174-233 (495)
330 2p58_C Putative type III secre 20.9 2.8E+02 0.0095 21.1 6.3 63 146-215 33-95 (116)
331 3s6n_M SurviVal motor neuron p 20.7 1.3E+02 0.0045 18.2 3.6 14 205-218 18-31 (37)
332 2rpa_A Katanin P60 ATPase-cont 20.7 78 0.0027 22.5 3.1 25 193-218 17-41 (78)
333 2cr7_A Paired amphipathic heli 20.6 88 0.003 22.1 3.4 64 169-232 9-72 (80)
334 3lxu_X Tripeptidyl-peptidase 2 20.2 2.8E+02 0.0095 30.0 8.4 71 184-256 1280-1351(1354)
335 3kez_A Putative sugar binding 20.2 2.6E+02 0.0087 25.7 7.5 48 135-183 170-225 (461)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.76 E-value=1.2e-17 Score=132.19 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=97.4
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|++.|++||+++|++..+|.++|.++.. +|+++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCHH
Confidence 45667789999999999999999999999999997777 58999999999999999999999999999977777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
+|+.+|+++++++|++..++..++.++
T Consensus 99 ~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 99 KAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999998764
No 2
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.74 E-value=4.4e-18 Score=138.03 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=102.6
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+..|++++..+|+++.+++.+|.+++. .|++++|+++|++||+++|+++.+|..+|.++.. .|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-AKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchH
Confidence 456677899999999999999999999999999977774 7999999999999999999999999999977776 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+|+.+|+++++++|+++.++..+|.++...|+++++..
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999999999999999998776553
No 3
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=3.1e-17 Score=133.01 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=101.3
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+.+|+++++++|+++.+|+.+|.++. ..|++++|+.+|++||+++|+++.++..+|.++.. +++++
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~ 116 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-NDVTD 116 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HCSSS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChH
Confidence 45777899999999999999999999999999996666 58999999999999999999999999999988877 89988
Q ss_pred HHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243 207 RAES-YFDQAVKAAPDDCYVLASHAHFLWDADED 239 (270)
Q Consensus 207 ~A~~-~~ekAL~~~P~~~~~~~~la~il~~~Ge~ 239 (270)
+|.. ++++|++++|+++.++..++.++...|++
T Consensus 117 ~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 117 GRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp SHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence 7665 56999999999999999999999988874
No 4
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.69 E-value=9.9e-17 Score=162.34 Aligned_cols=120 Identities=19% Similarity=0.171 Sum_probs=107.0
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|.++|++++|+.+|+++++++|+++.+++++|.++. .+|++++|+++|++||+++|+++.++.++|.++.. +|+++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g~~~ 94 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQDVQ 94 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence 45677889999999999999999999999999997666 47999999999999999999999999999977777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|+.+|++|++++|++..++.++|.+|..+|++++|....+.
T Consensus 95 ~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 95 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999865444
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=3e-16 Score=134.01 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=69.2
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-------
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH------- 202 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~------- 202 (270)
...|++++|+..|+++++++|+++.+++.+|.++. ..|++++|+++|+++++++|++..++..+|.++.. +
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~~~~~ 93 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA-LYRQAEDR 93 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHTCSSH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hhhhhhhh
Confidence 34456666666666666666666666666664444 35666666666666666666666666666655444 5
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 203 ----KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 203 ----g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
|++++|+..|+++++++|+++.++..+|.++...|+++++..
T Consensus 94 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 94 ERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 666666666666666666666666666666666666665553
No 6
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=3e-16 Score=134.04 Aligned_cols=119 Identities=14% Similarity=-0.015 Sum_probs=105.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-----------GDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~-----------Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
..|...|++++|+.+|+++++++|+++.++.++|.++. .. |++++|++.|+++++++|++..++..+|
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg 125 (217)
T 2pl2_A 47 RTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRG 125 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34556789999999999999999999999999996666 57 9999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 196 DLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 196 ~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.++.. .|++++|+.+|+++++++ +++.++..+|.++...|+++++....+.
T Consensus 126 ~~~~~-~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 126 LVYAL-LGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH-cCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777 999999999999999999 8999999999999999999998865443
No 7
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.66 E-value=3.6e-17 Score=134.65 Aligned_cols=110 Identities=8% Similarity=0.010 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA 215 (270)
-.+...|+++++++|+++.+++.+|..++. .|++++|+++|+++++++|+++.+|.++|.++.. +|++++|+.+|+++
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIYSYAYDFYN-KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAVA 96 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHHHH
Confidence 333445666777888888888888866664 7888888888888888888888888888866666 88888888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 216 VKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 216 L~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
++++|+++.+++++|.+|..+|++++|....+
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888888888888888876533
No 8
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.66 E-value=4.6e-16 Score=132.03 Aligned_cols=111 Identities=13% Similarity=0.141 Sum_probs=102.1
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSN----------------YARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~----------------lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~ 192 (270)
+...|++++|+.+|+++++++|+++.+++. +|.++. ..|++++|+++|+++|+++|++..++.
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~ 92 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDCLE 92 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 345689999999999999999999999999 997766 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ee 241 (270)
.+|.++.. .|++++|+.+|+++++++|+++.+++.+|.+|+..++.+.
T Consensus 93 ~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 93 ACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence 99988887 9999999999999999999999999999999988775443
No 9
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.65 E-value=1.4e-15 Score=123.39 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=96.5
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+++|+++|+++|++..+|+++|.+++. +|+++
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~ 96 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MADYK 96 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHH
Confidence 34556789999999999999999999999999997777 48999999999999999999999999999987777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~ 236 (270)
+|+.+|+++++++|++..+++..+......
T Consensus 97 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 126 (164)
T 3sz7_A 97 GAKEAYEKGIEAEGNGGSDAMKRGLETTKR 126 (164)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 999999999999999988766666555443
No 10
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=1.1e-15 Score=124.96 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=77.2
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------------------
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------------------- 187 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------------------- 187 (270)
..|...|++++|+.+|+++++++|+++.++..+|.++. ..|++++|++.+++++..+|++
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQA 91 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHH
Confidence 44566788899999999999999888888888886555 3566666555555555555544
Q ss_pred ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 188 ---------------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 188 ---------------~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
..++..+|.++.. +|++++|+.+|+++++++|+++.++.++|.++..+|++++|...
T Consensus 92 a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 92 AIDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 4445555544444 56666666666666666666666666666666666666666544
No 11
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.7e-15 Score=116.04 Aligned_cols=107 Identities=17% Similarity=0.004 Sum_probs=98.3
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++++|+++.++.++|.++. ..|++++|++.|+++++++|++..++..+|.++.. +|++++
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~ 90 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYAS 90 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHHH
Confidence 4456789999999999999999999999999997777 58999999999999999999999999999977777 999999
Q ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHHHc
Q 024243 208 AESYFDQAVKAA------PDDCYVLASHAHFLWDA 236 (270)
Q Consensus 208 A~~~~ekAL~~~------P~~~~~~~~la~il~~~ 236 (270)
|+.+|+++++++ |++..++..+..+...+
T Consensus 91 A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 91 ALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999 99999999998877543
No 12
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.64 E-value=1.5e-15 Score=153.81 Aligned_cols=116 Identities=20% Similarity=0.142 Sum_probs=109.0
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+.+|+++++++|+++.+++++|.++. .+|++++|+++|++||+++|++..++.++|.++.. +|+++
T Consensus 51 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~ 128 (723)
T 4gyw_A 51 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNIP 128 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence 45667899999999999999999999999999997777 48999999999999999999999999999977777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+|+.+|++|++++|+++.++.+++.++..+++++++++
T Consensus 129 eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 99999999999999999999999999999999988874
No 13
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.64 E-value=6.9e-15 Score=111.24 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=102.5
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 98 (131)
T 2vyi_A 21 EQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVE 98 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHH
Confidence 3455789999999999999999999999999997776 58999999999999999999999999999987777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADED 239 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ 239 (270)
|+.+|+++++.+|++..++..++.++...|++
T Consensus 99 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 99 AVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998875
No 14
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.63 E-value=3.5e-15 Score=126.30 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=110.3
Q ss_pred cccccCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADP-RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP-~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
..|...|++++|+.+|+++++++| .+..+++.+|.++. ..|++++|+++|++|++++|++..++..+|.++.. +|++
T Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~ 92 (228)
T 4i17_A 15 NDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNN 92 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccH
Confidence 445667899999999999999999 99999999997766 58999999999999999999999999999988877 9999
Q ss_pred HHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 206 SRAESYFDQAVKAAPDDC-------YVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~-------~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++|+.+|+++++++|+++ .++..+|.++...|++++|....+.
T Consensus 93 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 93 QEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 999999999999999999 6699999999999999999976554
No 15
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.63 E-value=3.2e-15 Score=122.87 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=87.2
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...|++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+++|++|++++|+++.+|+++|.++.. +|++++
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg~~~e 122 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LKAPLK 122 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHH
Confidence 3455789999999999999999999999999997776 58999999999999999999999999999977777 999999
Q ss_pred HHHHHHHHHHhCCCCH
Q 024243 208 AESYFDQAVKAAPDDC 223 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~ 223 (270)
|+.+|++++++.|+.+
T Consensus 123 A~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 123 AKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhCCCHH
Confidence 9999999999999765
No 16
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.63 E-value=6.8e-16 Score=122.00 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=94.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243 144 KMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC 223 (270)
Q Consensus 144 kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~ 223 (270)
++..+||+.+.++.++|..++. .|+|++|+++|++||+++|+++.+|.++|.+++. +|++++|+..|+++++++|++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFK-KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhh
Confidence 4556899999999999988885 8999999999999999999999999999977777 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 224 YVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 224 ~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.+++.+|.++..+|++++|....+.
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYED 106 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999976554
No 17
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.62 E-value=4e-15 Score=113.67 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=101.4
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|+++
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~ 101 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYT 101 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHH
Confidence 34456789999999999999999999999999996666 58999999999999999999999999999987777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
+|+.+|+++++.+|++..++..++.++..+|+
T Consensus 102 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 102 KAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999988764
No 18
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.62 E-value=1.3e-15 Score=123.47 Aligned_cols=103 Identities=12% Similarity=-0.035 Sum_probs=62.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024243 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP 220 (270)
Q Consensus 141 ~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P 220 (270)
.|+++++++|++..+++.+|..++. .|++++|+++|+++++++|+++.+|..+|.++.. .|++++|+.+|+++++++|
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQ-SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCC
Confidence 4555666666666666666644443 5666666666666666666666666666654444 6666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 221 DDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 221 ~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+++.+++++|.++..+|+.++|...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~ 111 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESG 111 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666666666666543
No 19
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1e-15 Score=143.83 Aligned_cols=120 Identities=11% Similarity=0.062 Sum_probs=109.0
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD-LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd-~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
..|...+++++|+..|+++|+++|++..+|+++|.++. ..|+ +++|+++|++||+++|++..+|+++|.++.. +|++
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~ 182 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDP 182 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCC
T ss_pred HHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCH
Confidence 34456689999999999999999999999999997776 4786 9999999999999999999999999977777 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++|+.+|++|++++|++..+|+++|.++..+|+++++....+.
T Consensus 183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 183 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999999999999999999999999999988865444
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=1.7e-14 Score=117.84 Aligned_cols=96 Identities=15% Similarity=0.031 Sum_probs=87.5
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..+...++++.|+..++++++++|++..++..+|.++. ..|++++|+++|+++++++|+++.++.++|.++.. +|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHH
Confidence 34456789999999999999999999999999997766 58999999999999999999999999999987777 99999
Q ss_pred HHHHHHHHHHHhCCCCHH
Q 024243 207 RAESYFDQAVKAAPDDCY 224 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~ 224 (270)
+|+.+|++|++++|+++.
T Consensus 159 ~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhCCccCHH
Confidence 999999999999997643
No 21
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.61 E-value=3.7e-15 Score=118.65 Aligned_cols=103 Identities=17% Similarity=-0.012 Sum_probs=68.7
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
...|++++|+.+|+++++.+|+++.+|..+|.++. ..|++++|+++|++|++++|+++.+++.+|.++.. +|++++|+
T Consensus 29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~ 106 (142)
T 2xcb_A 29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LGDLDGAE 106 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence 34567777777777777777777777777775555 36777777777777777777777777777755555 77777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
.+|+++++++|+++........+..
T Consensus 107 ~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 107 SGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHH
Confidence 7777777777766555544444433
No 22
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=5.8e-15 Score=119.57 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=91.2
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...|++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. +|++++
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~~ 107 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XGELAE 107 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHH
Confidence 4456789999999999999999999999999997776 58999999999999999999999999999977777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
|+.+|+++++++|+++........
T Consensus 108 A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 108 AESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHHHHCcCCCcchHHHHH
Confidence 999999999999987765444333
No 23
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.59 E-value=4.9e-14 Score=105.63 Aligned_cols=108 Identities=20% Similarity=0.296 Sum_probs=100.1
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+.+|+++++++|++..++..++.++.. .+++++
T Consensus 18 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~ 95 (125)
T 1na0_A 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDE 95 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHH
Confidence 4556789999999999999999999999999997776 48999999999999999999999999999988887 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDAD 237 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~G 237 (270)
|+.+|+++++.+|++..++..++.++...|
T Consensus 96 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 96 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999987654
No 24
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.59 E-value=4.5e-15 Score=121.07 Aligned_cols=118 Identities=9% Similarity=0.127 Sum_probs=104.6
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA--SR 207 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~--e~ 207 (270)
...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|+++.++..+|.+++...+++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45679999999999999999999999999997776 5899999999999999999999999999998834448998 99
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|+.+|+++++.+|++..+++.+|.+++..|+++++....+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999976554
No 25
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.59 E-value=2.8e-14 Score=113.24 Aligned_cols=115 Identities=13% Similarity=-0.006 Sum_probs=102.9
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. +|++++
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~ 99 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRA 99 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccHHH
Confidence 3456789999999999999999999999999997766 58999999999999999999999999999977777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCcHHHHh
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHF--LWDADEDEEDEQ 244 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~i--l~~~Ge~eea~~ 244 (270)
|+.+|+++++++|++..++..++.+ +...|+++++..
T Consensus 100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888555544 778888888764
No 26
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.59 E-value=1.1e-14 Score=133.19 Aligned_cols=112 Identities=17% Similarity=0.092 Sum_probs=104.7
Q ss_pred ccCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY 194 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n---------------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~l 194 (270)
...+++++|+.+|+++++++|++ ..+++++|.++. ..|++++|+++|++||+++|++..+++++
T Consensus 158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~l 236 (336)
T 1p5q_A 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRR 236 (336)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34589999999999999999999 699999997776 58999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
|.++.. +|++++|+.+|+++++++|++..++..++.++..+++.++++
T Consensus 237 g~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 237 GEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 987777 999999999999999999999999999999999999988774
No 27
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=4.8e-14 Score=106.38 Aligned_cols=117 Identities=19% Similarity=0.274 Sum_probs=107.9
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|++..++..+|..+. ..|++++|+++|+++++.+|++..++..++.++.. .|++++
T Consensus 10 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 87 (136)
T 2fo7_A 10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDE 87 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHHH
Confidence 3445689999999999999999999999999997776 47999999999999999999999999999977777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
|+.+++++++..|++..++..++.++...|+.+++....
T Consensus 88 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 999999999999999999999999999999999998654
No 28
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.58 E-value=7.5e-15 Score=116.86 Aligned_cols=107 Identities=7% Similarity=-0.124 Sum_probs=96.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243 140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (270)
Q Consensus 140 ~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~ 219 (270)
..|+++++++|++..+++.+|..++ ..|++++|+++|+++++++|+++.+|..+|.++.. .|++++|+.+|+++++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence 5788899999999999999997777 48999999999999999999999999999977777 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 220 PDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 220 P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|+++.+++.+|.++..+|+++++....+.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999865443
No 29
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.57 E-value=5.3e-15 Score=119.65 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=97.5
Q ss_pred cccccCCChHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQA------------------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG 188 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALel------------------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~ 188 (270)
..|...|++++|+.+|++++++ +|.+..+++++|.++. ..|++++|+.+|++||+++|+++
T Consensus 19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~~ 97 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETNE 97 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcch
Confidence 3445678999999999999999 7888899999997776 58999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC
Q 024243 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC-YVLASHAHFLWDADE 238 (270)
Q Consensus 189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~-~~~~~la~il~~~Ge 238 (270)
.+++.+|.++.. +|++++|+.+|+++++++|++. .+...+..+.....+
T Consensus 98 ~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 98 KALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999987777 9999999999999999999998 777777777765543
No 30
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.57 E-value=5.9e-14 Score=104.40 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=96.2
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus 13 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ 90 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEE 90 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHH
Confidence 3456789999999999999999999999999997776 48999999999999999999999999999987777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
|+.+|+++++.+|+++.++..++.+.
T Consensus 91 A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 91 AKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999988775
No 31
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=9e-14 Score=110.96 Aligned_cols=118 Identities=13% Similarity=-0.029 Sum_probs=107.9
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++.+|++..++..+|.++.. .|++++
T Consensus 51 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ 128 (186)
T 3as5_A 51 AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGRFDE 128 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHH
Confidence 4456789999999999999999999999999997766 47999999999999999999999999999987777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
|+.+|+++++.+|++..++..++.++...|+.+++....+
T Consensus 129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999986543
No 32
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.57 E-value=2.6e-14 Score=112.63 Aligned_cols=101 Identities=17% Similarity=0.262 Sum_probs=86.0
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-------NVLSMYGDLIW 199 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-------~al~~lA~ll~ 199 (270)
..|...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|++.|++||+++|++. .++.++|.++.
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999997776 48999999999999999998763 57888886666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 200 QSHKDASRAESYFDQAVKAAPDDCYVLASHA 230 (270)
Q Consensus 200 ~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la 230 (270)
. ++++++|+.+|+++++.+|+ +.+...+.
T Consensus 95 ~-~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 95 K-QNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp H-TTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred H-cCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 6 99999999999999999884 55554443
No 33
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=3.7e-15 Score=126.21 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=102.9
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-------NVLSMYGDLIW 199 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-------~al~~lA~ll~ 199 (270)
..|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++. .++..+|.++.
T Consensus 50 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 50 VCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence 45566789999999999999999999999999997776 58999999999999999999999 66999997777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCc
Q 024243 200 QSHKDASRAESYFDQAVKAAPD--DCYVLASHAHFLWDADED 239 (270)
Q Consensus 200 ~~~g~~e~A~~~~ekAL~~~P~--~~~~~~~la~il~~~Ge~ 239 (270)
. .|++++|+.+|+++++++|+ +..++..+|.+++..|+.
T Consensus 129 ~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 129 Q-AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp H-TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 7 99999999999999999999 999999999999999887
No 34
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.56 E-value=1.2e-14 Score=113.74 Aligned_cols=94 Identities=12% Similarity=-0.015 Sum_probs=76.9
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
+...|++++|+..|+++++.+|+++.+|+.+|.++. ..|++++|+++|++|++++|++..++..+|.++.. .|++++|
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A 104 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAA 104 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence 345689999999999999999999999999996666 47999999999999999999999999999976666 8999999
Q ss_pred HHHHHHHHHhCCCCHH
Q 024243 209 ESYFDQAVKAAPDDCY 224 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~ 224 (270)
+.+|+++++++|++..
T Consensus 105 ~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 105 LASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHC-------
T ss_pred HHHHHHHHHhCcCCCC
Confidence 9999999999987653
No 35
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.4e-14 Score=136.06 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=102.4
Q ss_pred cccCCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 129 DPNNHG-NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 129 Ye~~gd-~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
|...++ +++|+.+|+++++++|++..+|+++|.++. ..|++++|+++|++||+++|++..+|.++|.++.. +|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCChHH
Confidence 344565 999999999999999999999999997666 58999999999999999999999999999987777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHH
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWD-ADEDEED 242 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~-~Ge~eea 242 (270)
|+.+|+++++++|++..+|.+++.++.. .+..+++
T Consensus 219 Al~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 219 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999999999999999 5554665
No 36
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.56 E-value=2.9e-14 Score=118.98 Aligned_cols=114 Identities=13% Similarity=0.038 Sum_probs=103.2
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNP----------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~----------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al 191 (270)
.|...+++++|+.+|++++++.|.++ .++.++|.++. ..|++++|+++|+++++++|++..++
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~ 125 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKAL 125 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHHH
Confidence 34456899999999999999999998 89999997776 58999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
+.+|.+++. +|++++|+.+|+++++++|++..++..++.++..+++.++++
T Consensus 126 ~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 126 YKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999987777 999999999999999999999999999999999888766665
No 37
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.55 E-value=3.1e-14 Score=136.79 Aligned_cols=120 Identities=13% Similarity=-0.001 Sum_probs=106.2
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
+..|...+++++|+.+|+++++++|+++.++.++|.++. .+|++++|+++|++|++++|+++.++.++|.++.. +|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence 345667889999999999999999999999999997776 58999999999999999999999999999977777 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCcHHHHhccC
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHF--LWDADEDEEDEQVGE 247 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~i--l~~~Ge~eea~~~~e 247 (270)
++|+.+|+++++++|++..++..++.+ +..+|++++|....+
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999988 888888888776544
No 38
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.55 E-value=8.5e-14 Score=125.15 Aligned_cols=119 Identities=11% Similarity=0.073 Sum_probs=108.4
Q ss_pred cccccCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
..|...|++++|+.+|+++++++|+ ++.++..+|.++. ..|++++|+++|+++++++|+++.++..+|.++.. .|+
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~ 262 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDR 262 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC
Confidence 4566788999999999999999999 9999999997776 58999999999999999999999999999987777 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
+++|+.+|+++++++|++..++..+|.++..+|+++++....+
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999986543
No 39
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.55 E-value=8.8e-15 Score=112.70 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=91.8
Q ss_pred CCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 132 NHGNNSTDLYYQKMIQA---DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 132 ~gd~~eA~~~y~kALel---dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
.|++++|+.+|++++++ +|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++.. .|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence 46899999999999999 6999999999997777 58999999999999999999999999999977777 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLWDADED 239 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ 239 (270)
+.+|+++++.+|+++.+......+....+..
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877666666555543
No 40
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.55 E-value=3.2e-14 Score=110.37 Aligned_cols=107 Identities=12% Similarity=0.030 Sum_probs=92.2
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~ 95 (137)
T 3q49_B 18 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDE 95 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHHH
Confidence 3456789999999999999999999999999996666 48999999999999999999999999999977777 999999
Q ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 024243 208 AESYFDQAVKAAPD-----DCYVLASHAHFLWDA 236 (270)
Q Consensus 208 A~~~~ekAL~~~P~-----~~~~~~~la~il~~~ 236 (270)
|+.+|+++++++|+ +..+...+..+....
T Consensus 96 A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 96 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 677777766665443
No 41
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.54 E-value=1.1e-14 Score=145.44 Aligned_cols=127 Identities=9% Similarity=-0.074 Sum_probs=115.2
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+..|+++++++|+++.+++++|.++. ..|++++|++.|++|++++|++..++.++|.++.. +|+++
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g~~~ 518 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AGNTD 518 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCCC
T ss_pred HHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChH
Confidence 34455689999999999999999999999999997777 58999999999999999999999999999977777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNF 256 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f 256 (270)
+ +.+|++|++++|++..+++++|.++..+|++++|....+.....+|.+
T Consensus 519 ~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 519 E-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp T-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred H-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 9 999999999999999999999999999999999998777755555543
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=2.5e-13 Score=114.02 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=90.4
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ 143 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQPKL 143 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccHHH
Confidence 3445667888888888888888888888888885555 46888888888888888888888888888866666 788888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
|+.+|+++++.+|++..++..++.++...|+++++....
T Consensus 144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888888888888888888888877777543
No 43
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=9.6e-14 Score=108.04 Aligned_cols=106 Identities=15% Similarity=0.020 Sum_probs=96.2
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK 203 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g 203 (270)
..|...+++++|+.+|+++++.+|++ ..++.++|.++. ..|++++|+++|+++++++|++..+++.+|.+++. ++
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~ 113 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-LG 113 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-cC
Confidence 34456789999999999999999998 899999997666 58999999999999999999999999999987777 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
++++|+.+|+++++++|++..++..++.+..
T Consensus 114 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 114 RLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999999988887753
No 44
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=5.1e-14 Score=127.88 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=58.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
..|++++|+.+|+++++++|+++.++..+|.++. ..|++++|+++|+++++++|++..++..++.++.. .|++++|+.
T Consensus 249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~ 326 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHH
Confidence 3445555555555555555555555555553333 24555555555555555555555555555544433 555555555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+|+++++.+|++..++..++.++...|+++++...
T Consensus 327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555555555555555555555443
No 45
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.52 E-value=3.2e-13 Score=103.60 Aligned_cols=109 Identities=11% Similarity=0.019 Sum_probs=96.3
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQS 201 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~ 201 (270)
.+...|++++|+..|+++++.+|+++ .+++.+|.+++ ..|++++|+++|+++++.+|++ +.+++.+|.+++.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~- 88 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG- 88 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-
Confidence 34567899999999999999999998 89999997777 4899999999999999999999 8999999987777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
+|++++|+.+|+++++.+|+++.+......+....++
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999888877766655443
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.1e-13 Score=114.42 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=110.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.+++. .|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-EGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-cCCHH
Confidence 44566789999999999999999999999999997666 58999999999999999999999999999988877 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|+.+|+++++.+|++..++..++.++...|+.+++....+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999865444
No 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.4e-13 Score=116.07 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=106.0
Q ss_pred ccccCCChHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQ--------------------------ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAI 181 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALe--------------------------ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAI 181 (270)
.|...+++++|+.+|+++++ .+|.++.++..+|.++. ..|++++|+++|++++
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~ 166 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNAVKAYTEMI 166 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 44556788888888888888 77888899999997776 5899999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 182 LMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 182 eldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
+++|++..++..+|.++.. .|++++|+.+|+++++.+|++..++..++.++...|+.+++....+
T Consensus 167 ~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 167 KRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999987777 9999999999999999999999999999999999999999986543
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=1e-13 Score=110.67 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=109.6
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|.+..++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ 94 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQKYDL 94 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHH
Confidence 4455689999999999999999999999999997776 48999999999999999999999999999987777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|+.+|+++++.+|++..++..++.++...|+++++....+.
T Consensus 95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999865433
No 49
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=1.3e-13 Score=125.25 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=98.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+..|+++++++|+++.++.++|.++. ..|++++|+++|+++++++|+++.++..++.++.. .|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~ 288 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE-KGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH-HSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHH
Confidence 34455678888888888888888888888888886666 47888888888888888888888888888876666 88888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|+.+|+++++.+|++..++..++.++...|+.+++....+.
T Consensus 289 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888765444
No 50
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.52 E-value=4.7e-14 Score=134.42 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=102.5
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n---------------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~ 192 (270)
.|...+++++|+.+|+++++++|++ ..+++++|.++. ..|++++|+++|++||+++|++..+++
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~ 355 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLY 355 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHH
Confidence 3445689999999999999999999 699999997777 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
++|.+++. ++++++|+.+|++|++++|++..++..++.++..+++.++++.
T Consensus 356 ~~g~a~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 356 RRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987777 9999999999999999999999999999999999999887764
No 51
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.51 E-value=9.8e-14 Score=115.97 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=88.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD----------LLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd----------~~eA~e~~ekAIeldP~n~~al~~lA~ll~~ 200 (270)
+.+.+++|+..|+++++++|+++.+|+++|.++.. .++ +++|+..|++||+++|++.++|+++|.++..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34689999999999999999999999999987775 565 4699999999999999999999999988776
Q ss_pred Hc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 201 SH-----------KDASRAESYFDQAVKAAPDDCYVLASHAHF 232 (270)
Q Consensus 201 ~~-----------g~~e~A~~~~ekAL~~~P~~~~~~~~la~i 232 (270)
+ +++++|+.+|++|++++|++..++..+..+
T Consensus 93 -lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 93 -FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp -HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5 489999999999999999998776665543
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=1.1e-13 Score=118.66 Aligned_cols=119 Identities=12% Similarity=0.089 Sum_probs=106.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHc
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMYGDLIWQSH 202 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----~al~~lA~ll~~~~ 202 (270)
..|...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++ .|.++ .++..+|.++.. .
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~ 87 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-K 87 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-T
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-c
Confidence 34566789999999999999999999999999997666 58999999999999999 54443 458999977777 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|++++|+.+|+++++.+|++..++..+|.++...|+++++....+.
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987665
No 53
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.50 E-value=2.1e-13 Score=121.76 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=94.6
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK 203 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g 203 (270)
+.++ ..+++++|+.+|+++++.+|+ ++.++..+|.++. ..|++++|+++|+++++++|+++.++..+|.++.. .|
T Consensus 189 ~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g 265 (368)
T 1fch_A 189 GSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GN 265 (368)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred HHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cC
Confidence 3444 667888888888888888888 7888888886665 47888888888888888888888888888876666 88
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
++++|+.+|+++++++|++..++..+|.++...|+++++...
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888888888888888888888888888888754
No 54
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.50 E-value=2.1e-13 Score=119.12 Aligned_cols=126 Identities=12% Similarity=0.114 Sum_probs=100.4
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS---------PNDGNVLSMYGDLI 198 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld---------P~n~~al~~lA~ll 198 (270)
.|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|++++++. |.+..++..+|.++
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 4455678888888888888888888888888886666 4788888888888888876 66778888888776
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243 199 WQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN 255 (270)
Q Consensus 199 ~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~ 255 (270)
.. .|++++|+.+|+++++++|++..++..++.++...|+.+++....+......|.
T Consensus 247 ~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 247 RK-LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HH-TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred HH-hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 66 888888888888888888888888888888888888888888766554334443
No 55
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.50 E-value=1.2e-13 Score=114.88 Aligned_cols=116 Identities=15% Similarity=0.068 Sum_probs=103.6
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|++++ +| ++.+++++|.++. ..|++++|+++|+++++++|++..++.++|.++.. .|++++
T Consensus 15 ~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~ 89 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDL 89 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHH
Confidence 3456789999999999996 44 7899999997766 58999999999999999999999999999987777 999999
Q ss_pred HHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 208 AESYFDQAVKAAPDDC----------------YVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~----------------~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|+.+|+++++..|++. .+++++|.++..+|+++++....+.
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999888876 9999999999999999999865433
No 56
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.49 E-value=1.6e-14 Score=118.77 Aligned_cols=127 Identities=15% Similarity=-0.002 Sum_probs=104.4
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.+...|++++|+..|+++++.+|+++.+++.+|.++. ..|++++|+++|+++++++| ++.++..++.+.+....+..+
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccch
Confidence 3455789999999999999999999999999997766 58999999999999999999 888777766554432334456
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCC
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNF 256 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f 256 (270)
|+..|+++++.+|+++.+++.+|.++...|+++++....+.....+|.+
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 8999999999999999999999999999999999987655533334443
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=2.1e-13 Score=115.79 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=107.4
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL--MSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe--ldP~n~~al~~lA~ll~~~~g~ 204 (270)
..|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++ .+|.+..++..+|.+++. .|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~ 156 (252)
T 2ho1_A 79 VVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MKK 156 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cCC
Confidence 34556789999999999999999999999999996666 48999999999999999 889999999999977777 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+++|+.+|+++++.+|++..++..++.++...|+++++....+.
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999866544
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=2e-13 Score=116.72 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=80.1
Q ss_pred cCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 131 NNHGNNSTDLYYQKMIQA----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALel----dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
.++++++|+.+|+++++. +|.++.+++.+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHH
Confidence 345777777777777776 3455667777775555 36777777777777777777777777777766655 77777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+|+.+|+++++++|++..++..+|.++...|+++++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 134 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHH
Confidence 7777777777777777777777777777777777776543
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=4.9e-13 Score=110.36 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=63.4
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH-KDASRA 208 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~-g~~e~A 208 (270)
...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. . |++++|
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~~A 96 (225)
T 2vq2_A 19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAES 96 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCcHHHH
Confidence 33455556666666666655555555555554444 34555566655666555555555555555544444 5 555555
Q ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 209 ESYFDQAVK--AAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 209 ~~~~ekAL~--~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+.+|+++++ .+|.+..++..++.++...|+.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555 444445555555555555555555553
No 60
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.49 E-value=2.8e-13 Score=130.90 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=107.9
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|++|++++|++..++.++|.++.. +|++++
T Consensus 32 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~ 109 (568)
T 2vsy_A 32 AELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AGQAEA 109 (568)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHH
Confidence 4455689999999999999999999999999997776 58999999999999999999999999999987777 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCcHHHHhcc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDA---DEDEEDEQVG 246 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~---Ge~eea~~~~ 246 (270)
|+.+|+++++.+|++..++..++.++..+ |+.+++....
T Consensus 110 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999999999999999999999999 9988887643
No 61
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.49 E-value=5.3e-13 Score=116.40 Aligned_cols=113 Identities=12% Similarity=0.172 Sum_probs=63.8
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++|+
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~ 226 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEAL 226 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHH
Confidence 33445555555555555555555555555554444 34555555555555555555555555555544444 55555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
.+|+++++.+|++..++..++.++...|+++++..
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 55555555555555555555555555555555543
No 62
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.48 E-value=2.9e-13 Score=102.44 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=97.2
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSMYGDLIWQ 200 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-------~~al~~lA~ll~~ 200 (270)
.|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++ ..++..+|.++..
T Consensus 13 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 91 (131)
T 1elr_A 13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999997776 4899999999999999999987 9999999977777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 201 ~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
.|++++|+.+|+++++.+| ++.++..++.+....++
T Consensus 92 -~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 92 -EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp -TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred -hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 68888888888766544
No 63
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.48 E-value=7e-13 Score=115.62 Aligned_cols=110 Identities=10% Similarity=-0.010 Sum_probs=92.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. +|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN-MSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hccHH
Confidence 34566799999999999999999999999999997777 48999999999999999999999999999988877 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHcCC
Q 024243 207 RAESYFDQAVKAAPDDCYVLAS-----HAHFLWDADE 238 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~-----la~il~~~Ge 238 (270)
+|+.+|+++++.+|++...... ...++...+.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence 9999999999999975333222 4555555444
No 64
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=5.5e-13 Score=110.10 Aligned_cols=118 Identities=15% Similarity=0.108 Sum_probs=102.1
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCC
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-GDLLKAEEYCARAIL--MSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~-Gd~~eA~e~~ekAIe--ldP~n~~al~~lA~ll~~~~g~ 204 (270)
.|...+++++|+.+|+++++.+|++..++..+|.++. .. |++++|+++|+++++ .+|.+..++..+|.++.. .|+
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 128 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QGQ 128 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TTC
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cCC
Confidence 4456688999999999999999999999999996666 58 999999999999999 667778899999977776 899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
+++|+.+|+++++.+|++..++..++.++...|+++++....+
T Consensus 129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999988886543
No 65
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=3.3e-13 Score=114.58 Aligned_cols=119 Identities=14% Similarity=0.178 Sum_probs=108.9
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus 46 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~ 123 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QKRYEE 123 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-HhHHHH
Confidence 3445689999999999999999999999999997776 48999999999999999999999999999988777 999999
Q ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 208 AESYFDQAVK--AAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 208 A~~~~ekAL~--~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|+.+|+++++ .+|.+..++..++.++...|+.+++....+.
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999 8899999999999999999999999865443
No 66
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.8e-13 Score=102.72 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASH 229 (270)
Q Consensus 150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~l 229 (270)
|..+..+..+|..++ ..|++++|+++|+++|+++|+++.++.++|.+++. +|++++|+.+|+++++++|++..+++.+
T Consensus 1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 445778899997777 48999999999999999999999999999987777 9999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHhccCC
Q 024243 230 AHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 230 a~il~~~Ge~eea~~~~e~ 248 (270)
|.++..+|+++++....+.
T Consensus 79 g~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHH
Confidence 9999999999999865443
No 67
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.48 E-value=1.4e-13 Score=128.31 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=106.7
Q ss_pred ccccCCChHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQ----------------ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALe----------------ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al 191 (270)
.|...+++++|+.+|+++++ .+|.+..++.++|.+++ ..|++++|+++|++||+++|+++.++
T Consensus 232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~ 310 (370)
T 1ihg_A 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKAL 310 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHHHH
Confidence 34456899999999999999 88899999999997776 58999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+.+|.+++. ++++++|+.+|++|++++|++..++..++.++..+++.++++..
T Consensus 311 ~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 311 YRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987777 99999999999999999999999999999999999988887754
No 68
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.48 E-value=2e-13 Score=122.77 Aligned_cols=120 Identities=15% Similarity=-0.029 Sum_probs=108.7
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|++..++..+|.++.. +|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA-NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN-LGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-CCCHH
Confidence 45566789999999999999999999999999997776 58999999999999999999999999999988877 99999
Q ss_pred HHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 207 RAESYFDQAVKAAPD------------DCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~------------~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|+.+|+++++++|+ +..++..++.++...|+.+.+....+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999987 367899999999999999988866443
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=1.5e-13 Score=131.26 Aligned_cols=119 Identities=10% Similarity=0.010 Sum_probs=108.1
Q ss_pred cccccCCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 024243 127 SWDPNNHGN-NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH--- 202 (270)
Q Consensus 127 ~~Ye~~gd~-~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~--- 202 (270)
..|...+++ ++|+.+|+++++++|+++.+|+.+|.++. ..|++++|+++|++|++++|+ ..++..+|.++.. .
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~-~~~~ 186 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ-LQTD 186 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT-CCCS
T ss_pred HHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH-hccC
Confidence 344557899 99999999999999999999999997777 489999999999999999998 7999999977776 8
Q ss_pred ------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCcHHHHhccCC
Q 024243 203 ------KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDA--------DEDEEDEQVGEE 248 (270)
Q Consensus 203 ------g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~--------Ge~eea~~~~e~ 248 (270)
|++++|+.+|+++++++|+++.++..+|.+|... |++++|....+.
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~ 246 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999 889988865443
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=2.5e-13 Score=129.73 Aligned_cols=110 Identities=11% Similarity=-0.134 Sum_probs=104.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--------GDLLKAEEYCARAILMSP---NDGNVLSMYGDLIWQS 201 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~--------Gd~~eA~e~~ekAIeldP---~n~~al~~lA~ll~~~ 201 (270)
+++++|+.+|+++++++|+++.+|+++|.++. .. |++++|+++|++|++++| +++.++.++|.+++.
T Consensus 193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~- 270 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY- 270 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-
Confidence 89999999999999999999999999997776 47 999999999999999999 999999999987777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+|++++|+.+|+++++++|++..++..++.++..+|+.+++..
T Consensus 271 ~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 271 EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888874
No 71
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.46 E-value=5.9e-13 Score=118.77 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=88.2
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
+..|...|++++|+.+|+++++++|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. +|++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~ 301 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAH 301 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCH
Confidence 455677899999999999999999999999999997776 58999999999999999999999999999988887 9999
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 024243 206 SRAESYFDQAVKAAPDDC 223 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~ 223 (270)
++|+.+|+++++++|++.
T Consensus 302 ~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 999999999999999774
No 72
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.46 E-value=6.5e-13 Score=115.97 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=103.3
Q ss_pred ccccCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 128 WDPNNH-GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 128 ~Ye~~g-d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
.|...+ ++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-TNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-TTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HhhHH
Confidence 344556 8999999999999999999999999997666 47999999999999999999999999999977777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+|+.+|+++++.+|+++.++..++.++...|+++++....
T Consensus 177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHH
Confidence 9999999999999999999999999999999999888543
No 73
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=1e-12 Score=112.31 Aligned_cols=116 Identities=10% Similarity=0.043 Sum_probs=103.1
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.+++. .|++++
T Consensus 52 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~ 129 (275)
T 1xnf_A 52 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKL 129 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHHH
Confidence 4456789999999999999999999999999997776 58999999999999999999999999999988887 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
|+.+|+++++++|++......++.. ...|+.+++....
T Consensus 130 A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 130 AQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH
Confidence 9999999999999998777666644 5668888887554
No 74
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.45 E-value=5.3e-13 Score=128.98 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=90.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ 212 (270)
+++++|+.+|+++++.+|++..++..+|..+. ..|++++|+++|++|++++|++..++.++|.++.. +|++++|+.+|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAEL-GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 58899999999999999999999999997777 47999999999999999999999999999987777 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+++++++|++..++..+|.++...|++++|....+.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 116 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999876544
No 75
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.45 E-value=1.6e-13 Score=114.87 Aligned_cols=103 Identities=8% Similarity=0.016 Sum_probs=90.2
Q ss_pred ccCCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHh-------CCCCHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPR-------NPL-----LLSNYARFLKEARGDLLKAEEYCARAILM-------SPNDGNV 190 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~-------n~~-----al~~lA~~l~~~~Gd~~eA~e~~ekAIel-------dP~n~~a 190 (270)
...|++++|+..|+++|+++|+ +.. +|.++|.++. .+|+|++|+..|++||++ +|++..+
T Consensus 22 ~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A 100 (159)
T 2hr2_A 22 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKL 100 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCchHHH
Confidence 4568999999999999999999 444 9999997777 589999999999999999 9999999
Q ss_pred H----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 191 L----SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 191 l----~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
| +++|.++.. +|++++|+..|++|++++|++..+.-.+..+..
T Consensus 101 ~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 101 WISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred HHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9 999976666 999999999999999999988766665555443
No 76
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.45 E-value=3.5e-13 Score=99.45 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH
Q 024243 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYVL 226 (270)
Q Consensus 149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~~ 226 (270)
+|+++.++..+|..+. ..|++++|+.+|+++++++|++..++..+|.++.. .|++++|+.+|+++++.+|+ +..++
T Consensus 2 ~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHHH
Confidence 4555666666664444 35666666666666666666666666666655444 66666666666666666666 66666
Q ss_pred HHHHHHHHHc-CCcHHHHhcc
Q 024243 227 ASHAHFLWDA-DEDEEDEQVG 246 (270)
Q Consensus 227 ~~la~il~~~-Ge~eea~~~~ 246 (270)
..++.++... |+.+++....
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAE 100 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 6666666666 6666665443
No 77
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=5.8e-13 Score=112.23 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=108.6
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-----------------
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN-------PLLLSNYARFLKEARGDLLKAEEYCARAIL----------------- 182 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n-------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe----------------- 182 (270)
..|...+++++|+.+|+++++++|++ +.++..+|.++. ..|++++|+++|+++++
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a 124 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 34566789999999999999999987 799999997776 58999999999999999
Q ss_pred ---------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 183 ---------MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 183 ---------ldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.+|++..++..+|.+++. .|++++|+.+|+++++.+|+++.++..+|.++...|+++++....+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 125 LKKAEAEAYVNPEKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 777888999999988877 99999999999999999999999999999999999999999865443
No 78
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.44 E-value=1.2e-12 Score=105.86 Aligned_cols=97 Identities=14% Similarity=0.071 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS 228 (270)
Q Consensus 149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~ 228 (270)
++.++.+++.+|..++ ..|++++|+++|+++|+++|++..++.++|.+++. +|++++|+.+|+++++++|++..+++.
T Consensus 7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4566888999997777 48999999999999999999999999999988877 999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHhccC
Q 024243 229 HAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 229 la~il~~~Ge~eea~~~~e 247 (270)
+|.++..+|+++++....+
T Consensus 85 lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHH
Confidence 9999999999999986433
No 79
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=4.6e-13 Score=114.73 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=102.9
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|..++. .++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHH
Confidence 45667789999999999999999999999999997776 48999999999999999999999999999955565 67999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHH
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADE---DEEDE 243 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge---~eea~ 243 (270)
+|+.+|+++++.+|++..++..++.++...++ .+++.
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 199 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHH
Confidence 99999999999999999999999999999987 54444
No 80
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.44 E-value=7.7e-13 Score=97.58 Aligned_cols=94 Identities=14% Similarity=0.042 Sum_probs=86.7
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-C
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSH-K 203 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~-g 203 (270)
..|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++++|+ +..++..+|.++.. . |
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~~ 91 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IEG 91 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CSS
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HhC
Confidence 44566789999999999999999999999999997776 589999999999999999999 99999999977776 9 9
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 024243 204 DASRAESYFDQAVKAAPDD 222 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~ 222 (270)
++++|+.+++++++.+|.+
T Consensus 92 ~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 92 KEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CSHHHHHHHHHHGGGCCCC
T ss_pred CHHHHHHHHHHHhhcccCC
Confidence 9999999999999999975
No 81
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.44 E-value=3.1e-12 Score=99.02 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=89.8
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL 226 (270)
Q Consensus 147 eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~ 226 (270)
..+|.++..+..+|..++ ..|++++|+++|+++++++|+++.++..+|.+++. ++++++|+.+|+++++++|+++.++
T Consensus 3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHH
Confidence 467889999999997777 48999999999999999999999999999987777 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCcHHHHhccC
Q 024243 227 ASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 227 ~~la~il~~~Ge~eea~~~~e 247 (270)
+.+|.++...|+++++....+
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999986543
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.44 E-value=2e-13 Score=115.58 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=98.0
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-- 203 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-- 203 (270)
+..|...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|+++|+++|+++.+++++|.+++. .+
T Consensus 61 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~ 138 (208)
T 3urz_A 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL-TAEQ 138 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HhHH
Confidence 345667899999999999999999999999999997777 58999999999999999999999999999987765 43
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+.+.+...|.+++...| ...+++.+|.++...|++++|....+.
T Consensus 139 ~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp HHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44567778888764333 344678888888889999998877655
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.43 E-value=1.1e-12 Score=113.54 Aligned_cols=119 Identities=14% Similarity=0.033 Sum_probs=104.0
Q ss_pred cccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH-
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQS- 201 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~- 201 (270)
|...|++++|+..|+++++.+|++ +.+++.+|.+++. .|++++|++.|+++++++|++ ..+++.+|.+++..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence 345689999999999999999999 9999999977774 899999999999999998854 67899999555431
Q ss_pred ------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcHHHHhccCC
Q 024243 202 ------HKDASRAESYFDQAVKAAPDDCYVL-----------------ASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 202 ------~g~~e~A~~~~ekAL~~~P~~~~~~-----------------~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|++++|+.+|+++++.+|++..+. +.+|.+|...|++++|....+.
T Consensus 104 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 104 PPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7999999999999999999987766 8889999999999999876444
No 84
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.43 E-value=1e-12 Score=100.16 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA 215 (270)
++|+..|+++++.+|+++.+++.+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++|+.+|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 36889999999999999999999997776 58999999999999999999999999999987777 99999999999999
Q ss_pred HHhCCC--CHHHHHHHHHHHHHcCCcHH
Q 024243 216 VKAAPD--DCYVLASHAHFLWDADEDEE 241 (270)
Q Consensus 216 L~~~P~--~~~~~~~la~il~~~Ge~ee 241 (270)
++++|+ +......+...+..+++...
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~~~~~ 107 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLAREDA 107 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhccccC
Confidence 999884 56677777777766655433
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.43 E-value=5.9e-13 Score=113.70 Aligned_cols=121 Identities=10% Similarity=0.005 Sum_probs=98.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-----------------hCCHHHHHHHHHHHHHhCCC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPL---LLSNYARFLKEA-----------------RGDLLKAEEYCARAILMSPN 186 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~---al~~lA~~l~~~-----------------~Gd~~eA~e~~ekAIeldP~ 186 (270)
..|...|++++|+..|+++++.+|+++. +++.+|.+++.. .|++++|++.|+++|+.+|+
T Consensus 49 ~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 49 YAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 3456678999999999999999998864 677888665531 47889999999999999998
Q ss_pred CHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHHhcc
Q 024243 187 DGNVL-----------------SMYGDLIWQSHKDASRAESYFDQAVKAAPDDC---YVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 187 n~~al-----------------~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~---~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+..++ ..+|.+++. .|++++|+..|+++++.+|+++ .+++.++.++..+|+.+++....
T Consensus 129 ~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 129 SQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 87654 456766666 8999999999999999999886 67999999999999999998765
Q ss_pred CC
Q 024243 247 EE 248 (270)
Q Consensus 247 e~ 248 (270)
+.
T Consensus 208 ~~ 209 (225)
T 2yhc_A 208 KI 209 (225)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 86
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.43 E-value=1.4e-12 Score=114.56 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=108.9
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|+++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 88 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKLD 88 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCChH
Confidence 34556789999999999999999999999999997777 48999999999999999999999999999988877 99999
Q ss_pred HHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCcHHHHhccCC
Q 024243 207 RAESYFDQAVKAAP---DDCYVLASH------------AHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 207 ~A~~~~ekAL~~~P---~~~~~~~~l------------a~il~~~Ge~eea~~~~e~ 248 (270)
+|+.+|+++++.+| ++..++..+ +.++...|+++++....+.
T Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999 899988888 7899999999999865443
No 87
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.43 E-value=9.8e-13 Score=107.09 Aligned_cols=104 Identities=11% Similarity=0.106 Sum_probs=92.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDL--LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~--~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
..|...+++++|+.+|+++++++|+++.++..+|.+++...|++ ++|+++|+++++++|++..++..+|.+++. .|+
T Consensus 52 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~ 130 (177)
T 2e2e_A 52 EYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QAN 130 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccc
Confidence 34566789999999999999999999999999997745457998 999999999999999999999999987777 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
+++|+.+|+++++.+|++......+..
T Consensus 131 ~~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 131 YAQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp HHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 999999999999999988665544443
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.42 E-value=1.2e-12 Score=116.72 Aligned_cols=113 Identities=14% Similarity=0.015 Sum_probs=70.7
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
...|++++|+..|+++++++|+++.+++.+|.++. ..|++++|+++|+++++.+|++...+...+ +.+...++.++|+
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~-~~l~~~~~~~~a~ 205 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ-IELLXQAADTPEI 205 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHH-HHHHHHHTSCHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHH-HHHHhhcccCccH
Confidence 45689999999999999999999999999997776 479999887766666555443332222222 2221234444444
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
..|+++++.+|++..+++.+|.++...|++++|..
T Consensus 206 ~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~ 240 (287)
T 3qou_A 206 QQLQQQVAENPEDAALATQLALQLHQVGRNEEALE 240 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 44444444444444444444444444444444443
No 89
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.42 E-value=3.2e-12 Score=114.49 Aligned_cols=116 Identities=11% Similarity=-0.081 Sum_probs=99.9
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFL-KEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l-~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
..|...|++++|+..|+++++.+|++.......+.+. ....|++++|+.+|+++++.+|+++.++..+|.++.. +|++
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~ 216 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRW 216 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCH
Confidence 4566789999999999999999999875544333211 1224899999999999999999999999999976666 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
++|+.+|+++++.+|+++.++.+++.++...|+.+++.
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999987653
No 90
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.41 E-value=8e-13 Score=103.31 Aligned_cols=99 Identities=11% Similarity=-0.074 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
.++.+|..+. ..|++++|+..|+++++++|+++.+|+.+|.++.. .|++++|+.+|+++++++|++..+++.+|.++.
T Consensus 19 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3567886666 47999999999999999999999999999977777 999999999999999999999999999999999
Q ss_pred HcCCcHHHHhccCCCCCCCCC
Q 024243 235 DADEDEEDEQVGEEPAPPSYN 255 (270)
Q Consensus 235 ~~Ge~eea~~~~e~~~~~~p~ 255 (270)
..|+.+++....+.....+|.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHHhCcC
Confidence 999999998765553333443
No 91
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.41 E-value=3.5e-12 Score=119.52 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=107.2
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.+++. .|+++
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~ 361 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFT 361 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence 34556789999999999999999999999999997666 48999999999999999999999999999987777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+|+.+|+++++.+|+++.++..++.++...|+++++....
T Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999998653
No 92
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.41 E-value=2.2e-12 Score=101.46 Aligned_cols=92 Identities=11% Similarity=0.144 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 024243 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD-------CY 224 (270)
Q Consensus 152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~-------~~ 224 (270)
.+.++.++|..++. +|+|++|+++|++||+++|+++.+|.++|.+++. +|++++|+.+|+++++++|++ ..
T Consensus 7 ~A~a~~~lG~~~~~-~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYK-QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 45677899988885 8999999999999999999999999999987777 999999999999999998875 35
Q ss_pred HHHHHHHHHHHcCCcHHHHhc
Q 024243 225 VLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 225 ~~~~la~il~~~Ge~eea~~~ 245 (270)
++.++|.++..++++++|...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~ 105 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQW 105 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHH
Confidence 888999999999999999864
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.40 E-value=4.7e-13 Score=133.63 Aligned_cols=113 Identities=13% Similarity=-0.092 Sum_probs=104.7
Q ss_pred cCCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243 131 NNHGNNSTDLYYQKMI--------QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (270)
Q Consensus 131 ~~gd~~eA~~~y~kAL--------eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~ 202 (270)
..+++++|+..|++++ +.+|++..+++.+|..+.. .|++++|++.|+++++++|++..+|+++|.+++. +
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD-LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-T 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-c
Confidence 4689999999999999 9999999999999977774 7999999999999999999999999999987777 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
|++++|+.+|++|++++|++..+++++|.++..+|++++ ....
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~ 523 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFY 523 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHH
Confidence 999999999999999999999999999999999999888 6443
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=6.2e-13 Score=118.27 Aligned_cols=131 Identities=12% Similarity=0.028 Sum_probs=104.6
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHhCCCC------HHHHH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEAR-GDLLKAEEYCARAILMSPND------GNVLS 192 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~-Gd~~eA~e~~ekAIeldP~n------~~al~ 192 (270)
|..|...|++++|+.+|++++++.|.. ..++.++|.++. .. |++++|+++|++|+++.|.+ ..++.
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 162 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 355667789999999999999998754 568889995555 55 99999999999999998865 56788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCC
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCY-------VLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQ 258 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~-------~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~ 258 (270)
++|.++.. +|++++|+.+|++++++.|++.. ++.+++.++..+|+.++|....+....+.|.|..
T Consensus 163 ~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 163 KCADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99987777 99999999999999999987653 6788999999999999999776665555666544
No 95
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.40 E-value=5.5e-14 Score=128.56 Aligned_cols=117 Identities=6% Similarity=-0.068 Sum_probs=108.3
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---------------HHHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---------------GNVLSMY 194 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---------------~~al~~l 194 (270)
...+++++|+..|+++++.+|+++.++.++|..++. .|++++|+++|++||+++|++ ..++.++
T Consensus 124 ~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 124 LHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK-EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999977774 899999999999999999999 6999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|.+++. +|++++|+.+|+++++++|++..+++++|.+|..+|++++|....+.
T Consensus 203 a~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 203 AMCHLK-LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 255 (336)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 977777 99999999999999999999999999999999999999999876544
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.40 E-value=1.5e-12 Score=114.36 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=95.6
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC---CCHHHHHHH----------
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP---NDGNVLSMY---------- 194 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP---~n~~al~~l---------- 194 (270)
.|...|++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++++| ++..++..+
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888888888888886666 47888888888888888888 888887777
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 195 --GDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 195 --A~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
|.++.. .|++++|+.+|+++++.+|+++.++..++.++...|+++++....+.
T Consensus 125 ~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 125 SQALDAFD-GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179 (359)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555 88888888888888888888888888888888888888888765444
No 97
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.7e-12 Score=96.65 Aligned_cols=101 Identities=8% Similarity=-0.085 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 024243 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD------CYV 225 (270)
Q Consensus 152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~ 225 (270)
++.++..+|..++ ..|++++|+++|++|++++|+++.++.++|.+++. +|++++|+.+|+++++++|++ ..+
T Consensus 3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 4677889997776 58999999999999999999999999999987777 999999999999999999999 899
Q ss_pred HHHHHHHHHHcCCcHHHHhccCCCCCCCCCCC
Q 024243 226 LASHAHFLWDADEDEEDEQVGEEPAPPSYNFQ 257 (270)
Q Consensus 226 ~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~ 257 (270)
++.++.++..+|+.+++... ...+++.|.
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~---~~~~~~~~~ 109 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVE---VDELPEGYD 109 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSS---SSSCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhH---HHHhHHHhc
Confidence 99999999999877666543 444455553
No 98
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.39 E-value=4.6e-13 Score=122.64 Aligned_cols=110 Identities=15% Similarity=0.007 Sum_probs=81.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNP-----------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN 189 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~-----------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~ 189 (270)
..|...+++++|+.+|+++++++|++. .+++++|.++. ..|++++|+++|++||+++|++..
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~ 265 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPK 265 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHH
Confidence 344567899999999999999999987 48999996666 589999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 190 al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
+|+++|.++.. +|++++|+.+|+++++++|++..++..++.+......
T Consensus 266 a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 266 ALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHHHHHHT-TTCHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 99999977777 9999999999999999999999999999988655444
No 99
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.9e-12 Score=115.57 Aligned_cols=122 Identities=14% Similarity=0.173 Sum_probs=104.2
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPL-LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~-al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~ 204 (270)
+.++...|++++|+..|+++++++|+++. +|.+++.++. ..|++++|.+.|++|++.+|.+..++..++.+.+...|+
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 34556678999999999999999999986 8999997776 479999999999999999998888888777555544699
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+++|+.+|+++++.+|+++.++..++.++...|+.+++....+.
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988865433
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.39 E-value=7.9e-13 Score=108.53 Aligned_cols=117 Identities=7% Similarity=-0.089 Sum_probs=99.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+.+|+++++.+| ++.++..++.......++..+|++.|+++++++|+++.+++.+|.++.. .|+++
T Consensus 48 ~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~ 125 (176)
T 2r5s_A 48 DCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ-VGRDE 125 (176)
T ss_dssp HHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHH
Confidence 445667899999999999999999 8887776664433223455568999999999999999999999977777 99999
Q ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHhc
Q 024243 207 RAESYFDQAVKAAPDD--CYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~--~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+|+.+|+++++.+|+. ..++..++.++..+|+.+++...
T Consensus 126 ~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 126 EALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 9999999999999975 66999999999999999887743
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=2.4e-12 Score=111.40 Aligned_cols=120 Identities=18% Similarity=0.014 Sum_probs=103.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHh--------hCCHHHHHHHHHHHHHhCCCCHHHH----
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEA--------RGDLLKAEEYCARAILMSPNDGNVL---- 191 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~--------~Gd~~eA~e~~ekAIeldP~n~~al---- 191 (270)
..|...|++++|+..|+++++.+|++ +.+++.+|.+++ . .|++++|++.|+++++.+|++..+.
T Consensus 60 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 138 (261)
T 3qky_A 60 RAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ 138 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH
Confidence 34566789999999999999998865 678999996666 5 7999999999999999999987766
Q ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCcHHHHhc
Q 024243 192 -------------SMYGDLIWQSHKDASRAESYFDQAVKAAPD---DCYVLASHAHFLWDA----------DEDEEDEQV 245 (270)
Q Consensus 192 -------------~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~---~~~~~~~la~il~~~----------Ge~eea~~~ 245 (270)
+.+|.+++. .|++++|+.+|+++++.+|+ .+.+++.++.++..+ |+++++...
T Consensus 139 ~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 139 KIRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 788977777 99999999999999999998 567999999999987 777777755
Q ss_pred cCC
Q 024243 246 GEE 248 (270)
Q Consensus 246 ~e~ 248 (270)
.+.
T Consensus 218 ~~~ 220 (261)
T 3qky_A 218 YER 220 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 102
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.37 E-value=5.5e-12 Score=115.73 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=100.6
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhhCCHHHHHHHHHHHHHhCCCCHH----HH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNY------------ARFLKEARGDLLKAEEYCARAILMSPNDGN----VL 191 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~l------------A~~l~~~~Gd~~eA~e~~ekAIeldP~n~~----al 191 (270)
.|...|++++|+.+|+++++.+|++..++..+ |..+. ..|++++|+++|+++++++|+++. ++
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 298 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI-RDGRYTDATSKYESVMKTEPSIAEYTVRSK 298 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 44566889999999999999999998887766 75565 479999999999999999998854 77
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
..++.++.. .|++++|+.+++++++++|++..++..++.++...|++++|....+.
T Consensus 299 ~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 299 ERICHCFSK-DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888877776 89999999999999999999999999999999999999999866544
No 103
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.36 E-value=8.3e-12 Score=114.54 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=105.5
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...|++++|+.+|+++++.+|+++.+++.+|.++. ..|++++|+++|+++++++|++..++..+|.++.. +|++++
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~ 112 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QGKLDE 112 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHH
Confidence 3455689999999999999999999999999997777 48999999999999999999999999999987777 999999
Q ss_pred HHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCcHHHHhccC
Q 024243 208 AESYFDQAVKAAPDDC---YVLASH------------AHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~---~~~~~l------------a~il~~~Ge~eea~~~~e 247 (270)
|+.+|+++++.+|++. .++..+ +.++...|+++++....+
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999988 776655 666999999999986543
No 104
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.36 E-value=9.2e-12 Score=118.62 Aligned_cols=118 Identities=12% Similarity=0.034 Sum_probs=102.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+.+|+++++++|++..+|..++..+. ..|++++|+++|+++++++|++..++..++.++.. .|+++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 458 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNIL 458 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHH
Confidence 34566789999999999999999999999999996666 47999999999999999999999999999977776 89999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+|+.+|+++++.+|+++.++..++.++...|+.+++....
T Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999998888653
No 105
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.35 E-value=1.2e-11 Score=88.86 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHA 230 (270)
Q Consensus 151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la 230 (270)
.++.+++.+|..+. ..|++++|+++|+++++++|++..++..+|.++.. .+++++|+.+|+++++++|++..++..++
T Consensus 7 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 46788999997766 48999999999999999999999999999987777 99999999999999999999999999999
Q ss_pred HHHHHcC
Q 024243 231 HFLWDAD 237 (270)
Q Consensus 231 ~il~~~G 237 (270)
.++..+|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998764
No 106
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.35 E-value=3.4e-12 Score=121.61 Aligned_cols=118 Identities=15% Similarity=0.069 Sum_probs=89.9
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM------SPND-GNVLSMYGDLIWQS 201 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------dP~n-~~al~~lA~ll~~~ 201 (270)
|...|++++|+.+|+++++.+|+++.++..++..+. ..|++++|+++|++++++ +|++ ..+|..++.++..
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~- 528 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK- 528 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH-
Confidence 344577888888888888888888888888886665 468888888888888877 5654 6777888877766
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.|++++|+.+|+++++.+|+++.++..++.+|...|+.+++....+.
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888877765443
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.35 E-value=8.5e-12 Score=103.61 Aligned_cols=103 Identities=10% Similarity=-0.004 Sum_probs=90.5
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----------------HH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----------------NV 190 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----------------~a 190 (270)
..|...|++++|+.+|+++++++|+++.+++++|.++. ..|++++|+++|++++++.|++. .+
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T 1hh8_A 45 CMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV 123 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHH
Confidence 34566789999999999999999999999999997776 48999999999999999998877 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
+.++|.+++. +|++++|+.+|+++++++|++.......+.
T Consensus 124 ~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 163 (213)
T 1hh8_A 124 LYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRHSKIDKAM 163 (213)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHcCcccccchHHHHH
Confidence 9999987777 999999999999999999987554444443
No 108
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.35 E-value=9.9e-13 Score=117.00 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=86.9
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
..|...|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|++|++++|++..+++.+|.++.. +|+++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~ 89 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYD 89 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence 34556789999999999999999999999999997766 58999999999999999999999999999987777 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 024243 207 RAESYFDQAVKAAPDD 222 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~ 222 (270)
+|+.+|+++++++|++
T Consensus 90 ~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 90 EAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccc
Confidence 9999999999999866
No 109
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.34 E-value=2.5e-13 Score=129.41 Aligned_cols=127 Identities=7% Similarity=-0.025 Sum_probs=112.2
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---------------HHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---------------GNVL 191 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---------------~~al 191 (270)
.++...+++++|+..|+++++.+|+++.++.++|..++. .|+|++|+.+|++||+++|++ ..+|
T Consensus 242 ~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 242 IYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFK-GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred EEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence 444566788899999999999999999999999987775 899999999999999999998 7999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243 192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN 255 (270)
Q Consensus 192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~ 255 (270)
.++|.+++. ++++++|+.+|++|++++|++..+++++|.+|..+|++++|....+....++|.
T Consensus 321 ~nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 321 LNLAMCYLK-LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 999977777 999999999999999999999999999999999999999999766553334444
No 110
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-11 Score=93.65 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS 228 (270)
Q Consensus 149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~ 228 (270)
.|.+..+++.+|..+. ..|++++|+++|+++++++|++..++..+|.++.. .+++++|+.+|+++++.+|++..+++.
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 4677889999997776 48999999999999999999999999999977776 999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHhccCC
Q 024243 229 HAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 229 la~il~~~Ge~eea~~~~e~ 248 (270)
+|.++...|+++++....+.
T Consensus 90 la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999865443
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.32 E-value=7e-12 Score=106.98 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=101.7
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQS- 201 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---al~~lA~ll~~~- 201 (270)
|...|++++|+..|+++++.+|+++ .+++.+|.+++ ..|++++|++.|+++++++|++.. +++.+|.+++..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 4456899999999999999999874 78999997777 489999999999999999999875 788888766541
Q ss_pred ----------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcHHHHhccCC
Q 024243 202 ----------------HKDASRAESYFDQAVKAAPDDCYVL-----------------ASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 202 ----------------~g~~e~A~~~~ekAL~~~P~~~~~~-----------------~~la~il~~~Ge~eea~~~~e~ 248 (270)
.|++++|+..|+++++.+|++..+. +.+|.+++..|+++++....+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG 172 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5789999999999999999987654 5788899999999999865443
No 112
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.2e-11 Score=110.49 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------hhCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE------ARGDL-------LKAEEYCARAIL-MSPNDGNVLSMYGDLIWQS 201 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~------~~Gd~-------~eA~e~~ekAIe-ldP~n~~al~~lA~ll~~~ 201 (270)
++|+..|+++++.+|+++.+|+++|.++.. ..|++ ++|...|++||+ ++|++..+|..++.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~- 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES- 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence 789999999999999999999999977653 24885 999999999999 799999999999977766
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHHHHhccCC
Q 024243 202 HKDASRAESYFDQAVKAAPDDCY-VLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P~~~~-~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.|++++|..+|+++++++|+++. ++..++.++...|+.+++....+.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999886 999999999999999998865444
No 113
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=3.4e-12 Score=108.42 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=104.5
Q ss_pred cccccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh--------CCCCHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------SPNDGNV 190 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel--------dP~n~~a 190 (270)
..|...+++++|+.+|++++++ +|....++..+|.++. ..|++++|+++|++++++ +|....+
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 129 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ 129 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 3456678999999999999988 4677889999996666 589999999999999999 5778899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKA--------APDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~--------~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+.++|.+++. .|++++|+.+|++++++ .|....++..+|.++...|++++|....
T Consensus 130 ~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 130 LNNLALLCQN-QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999987777 99999999999999999 7778889999999999999999998543
No 114
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.32 E-value=1.9e-11 Score=90.52 Aligned_cols=95 Identities=19% Similarity=0.050 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
.+..++.+|..+. ..|++++|+++|+++++.+|++..++..+|.+++. .|++++|+.+++++++.+|+++.++..++.
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3567888996666 48999999999999999999999999999987777 999999999999999999999999999999
Q ss_pred HHHHcCCcHHHHhccCC
Q 024243 232 FLWDADEDEEDEQVGEE 248 (270)
Q Consensus 232 il~~~Ge~eea~~~~e~ 248 (270)
++...|+++++....+.
T Consensus 81 ~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 99999999999876544
No 115
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.32 E-value=1.2e-11 Score=115.93 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=109.6
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
.+|...+++++|+.+|+++++.+|+ ..++..+|.++. ..|++++|+++|+++++++|+++.++..+|.++.. .|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-LQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHH
Confidence 4556678999999999999999999 999999996666 58999999999999999999999999999988877 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|+.+|+++++.+|++..++..++.++...|+++++....+.
T Consensus 328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999865443
No 116
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.30 E-value=2.5e-11 Score=91.36 Aligned_cols=100 Identities=11% Similarity=0.041 Sum_probs=90.2
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL 226 (270)
Q Consensus 147 eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~ 226 (270)
+.+|.++.++..+|..+. ..|++++|+++|+++++.+|++..++..+|.++.. .+++++|+.+++++++.+|++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp -CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcchhhhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHH
Confidence 445677888999997776 48999999999999999999999999999987777 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCcHHHHhccCC
Q 024243 227 ASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 227 ~~la~il~~~Ge~eea~~~~e~ 248 (270)
..+|.++...|+++++....+.
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999865443
No 117
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.30 E-value=8.3e-11 Score=87.70 Aligned_cols=99 Identities=19% Similarity=0.320 Sum_probs=87.0
Q ss_pred hCCCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 148 ADPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL 226 (270)
Q Consensus 148 ldP~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~ 226 (270)
.+|.+ ..+++.+|..+. ..|++++|+++|+++++.+|++..++..+|.++.. .|++++|+.+|+++++.+|++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp ----CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHH
Confidence 45666 788899996666 48999999999999999999999999999987777 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCcHHHHhccCC
Q 024243 227 ASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 227 ~~la~il~~~Ge~eea~~~~e~ 248 (270)
..++.++...|+++++....+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999865443
No 118
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4.5e-11 Score=92.68 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=91.3
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC 223 (270)
Q Consensus 147 eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~ 223 (270)
..+|.+...++.+|..++ ..|++++|+++|+++++++|++ ..++..+|.+++. .+++++|+.+|+++++.+|++.
T Consensus 22 ~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCH
T ss_pred ccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCH
Confidence 457889999999997666 5899999999999999999988 8999999977777 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 224 YVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 224 ~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.+++.++.++...|+++++....+.
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999876544
No 119
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.28 E-value=4.5e-12 Score=105.54 Aligned_cols=115 Identities=9% Similarity=-0.075 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----------------NVLSMYG 195 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----------------~al~~lA 195 (270)
.++++++...++...+..+.....+..+|..++ ..|++++|+++|++|+++.|+++ .++.++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 457777788887777777888889999997777 48999999999999999999987 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 196 DLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 196 ~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.+++. +|++++|+.+|+++++++|++..+++.+|.++..+|++++|....+.
T Consensus 96 ~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 96 TCYNK-NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH-hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 77777 99999999999999999999999999999999999999999865443
No 120
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.28 E-value=2.9e-11 Score=108.22 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=86.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR-AES 210 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~-A~~ 210 (270)
.+++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+++|++||+++|++++++.+++.++.. .|++.+ +..
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~-~g~~~eaa~~ 256 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH-LGKPPEVTNR 256 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 468999999999999999999999999996666 58999999999999999999999999999977777 888876 679
Q ss_pred HHHHHHHhCCCCHHHHH
Q 024243 211 YFDQAVKAAPDDCYVLA 227 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~ 227 (270)
+++++++++|+++.+.-
T Consensus 257 ~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 257 YLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhCCCChHHHH
Confidence 99999999999998764
No 121
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=1.3e-11 Score=104.88 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=103.7
Q ss_pred cccccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh--------CCCCHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------SPNDGNV 190 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel--------dP~n~~a 190 (270)
..|...+++++|+.+|++++++ +|....++.++|.++. ..|++++|+++|++++++ +|....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4556678999999999999998 5778899999996666 589999999999999999 7888899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------------------CCC
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKA-------------------------------------------------APD 221 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~-------------------------------------------------~P~ 221 (270)
+..+|.++.. +|++++|+.+|++++++ .|.
T Consensus 172 ~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 9999988887 99999999999999986 245
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 222 DCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 222 ~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
...++..+|.++...|++++|....
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~ 275 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLE 275 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6778999999999999999998653
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.26 E-value=4.3e-11 Score=89.92 Aligned_cols=92 Identities=23% Similarity=0.369 Sum_probs=84.6
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
|...+++++|+.+|+++++.+|.+..++..+|.++. ..|++++|+++++++++.+|++..++..++.++.. .|++++|
T Consensus 45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A 122 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEA 122 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHH
Confidence 445679999999999999999999999999996666 58999999999999999999999999999988877 9999999
Q ss_pred HHHHHHHHHhCCCC
Q 024243 209 ESYFDQAVKAAPDD 222 (270)
Q Consensus 209 ~~~~ekAL~~~P~~ 222 (270)
+.+|+++++.+|++
T Consensus 123 ~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 123 IEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHSTTC
T ss_pred HHHHHHHHccCCCC
Confidence 99999999999863
No 123
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=1.5e-11 Score=109.20 Aligned_cols=121 Identities=12% Similarity=0.057 Sum_probs=102.0
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPR------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSM 193 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~ 193 (270)
+..|...|++++|+.+|++++++.+. .+.++.++|.++. ..|++++|+.+|++|+++.|.. ..++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567788999999999999998542 2678999996666 5899999999999999999854 568899
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 194 YGDLIWQSH-KDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 194 lA~ll~~~~-g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|.++.. . |++++|+.+|++|+++.|++ ..++.++|.++..+|++++|....+.
T Consensus 123 lg~~~~~-~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 123 LGEILEN-DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHH-hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9976666 6 99999999999999998864 56789999999999999999865443
No 124
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.7e-11 Score=111.43 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=80.1
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN------VLSMYGDLIWQS 201 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~------al~~lA~ll~~~ 201 (270)
.|...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++.. ++..+|.++...
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT-DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 3445567777777777777777777777777775555 367777777777777777776644 677777443321
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 202 --HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 202 --~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.|++++|+.+|+++++.+|++..++..++.++...|+.+++...
T Consensus 426 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 57777777777777777777777777777777777777777654
No 125
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.1e-11 Score=114.90 Aligned_cols=117 Identities=14% Similarity=0.123 Sum_probs=94.6
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 356 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF-ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR-ENKFDD 356 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH-HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT-TTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH-cCCHHH
Confidence 4455677888888888888888888888888886665 47888888888888888888888888888866666 888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
|+.+|+++++.+|+++.++..++.++...|+++++....
T Consensus 357 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888888888888888888887543
No 126
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.25 E-value=6.5e-11 Score=98.92 Aligned_cols=92 Identities=18% Similarity=0.077 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-------DGN-----VLSMYGDLIWQSHKDASRAESYFDQAVKA-- 218 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-------n~~-----al~~lA~ll~~~~g~~e~A~~~~ekAL~~-- 218 (270)
...+.+.|..++. .|+|++|++.|++||+++|+ +.. +|.++|.++.. +|++++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~-~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLV-AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence 4567788977774 79999999999999999999 544 99999976666 99999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHcCCcHHHHhcc
Q 024243 219 -----APDDCYVL----ASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 219 -----~P~~~~~~----~~la~il~~~Ge~eea~~~~ 246 (270)
+|++..+| +++|.++..+|++++|....
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 99999999 99999999999999998643
No 127
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.24 E-value=8e-11 Score=89.97 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVLAS 228 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~~~ 228 (270)
+++.+|..++. .|++++|+++|+++++.+|++. .+++.+|.+++. .|++++|+.+|+++++.+|++ +.+++.
T Consensus 4 ~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALK-NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 46778867764 7999999999999999999998 899999988887 999999999999999999999 899999
Q ss_pred HHHHHHHcCCcHHHHhccCC
Q 024243 229 HAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 229 la~il~~~Ge~eea~~~~e~ 248 (270)
+|.++..+|+++++....+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999876444
No 128
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.24 E-value=5.8e-11 Score=95.63 Aligned_cols=94 Identities=15% Similarity=-0.015 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILM------------------SPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------------------dP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
+..+...|..++. .|+|++|+++|++||++ +|.+..++.++|.+++. +|++++|+.++++
T Consensus 11 a~~~~~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFV-QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence 5667889977774 89999999999999999 78888999999977777 9999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 215 AVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 215 AL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+++++|+++.+++.+|.++..+|++++|....+.
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 9999999999999999999999999999876444
No 129
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.23 E-value=6.5e-11 Score=89.24 Aligned_cols=96 Identities=8% Similarity=0.140 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 024243 151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD-------C 223 (270)
Q Consensus 151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~-------~ 223 (270)
..+..+..+|..+. ..|++++|+.+|+++++.+|++..++..+|.++.. .|++++|+.+|+++++.+|++ .
T Consensus 2 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 2 KQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 34677889997766 48999999999999999999999999999987777 999999999999999999887 9
Q ss_pred HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 224 YVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 224 ~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.+++.+|.++...|+++++....+.
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999865443
No 130
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.23 E-value=7.2e-11 Score=88.75 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=73.9
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 024243 148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYV 225 (270)
Q Consensus 148 ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~ 225 (270)
.+|+++.+++.+|.+++ ..|++++|+++|+++++++|+++.+|..+|.++.. .|++++|+.+|++++++.|+ +...
T Consensus 2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 58999999999997776 48999999999999999999999999999977777 99999999999999999774 5666
Q ss_pred HHHHHHHHHHcC
Q 024243 226 LASHAHFLWDAD 237 (270)
Q Consensus 226 ~~~la~il~~~G 237 (270)
...+..++...+
T Consensus 80 ~~~l~~~l~~~~ 91 (100)
T 3ma5_A 80 LSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 666666665443
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.22 E-value=2.8e-10 Score=89.81 Aligned_cols=94 Identities=12% Similarity=-0.077 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHF 232 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~i 232 (270)
+..+..+|..++ ..|++++|+++|+++++++|++..++..+|.++.. .|++++|+.+|+++++.+|+++.+++.+|.+
T Consensus 13 ~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 567788997776 48999999999999999999999999999977777 9999999999999999999999999999999
Q ss_pred HHHcCCcHHHHhccCC
Q 024243 233 LWDADEDEEDEQVGEE 248 (270)
Q Consensus 233 l~~~Ge~eea~~~~e~ 248 (270)
+...|+++++....+.
T Consensus 91 ~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 91 NMALGKFRAALRDYET 106 (166)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 9999999999865443
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.21 E-value=1.4e-10 Score=102.63 Aligned_cols=116 Identities=9% Similarity=0.071 Sum_probs=97.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHH---HhCCCCH----HHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAI---LMSPNDG----NVLSM 193 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAI---eldP~n~----~al~~ 193 (270)
.+|...+++++|+.+|+++++..+.. ..+++++|.++. ..|++++|+++|++|+ +..|++. .++.+
T Consensus 123 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence 34556679999999999999876554 568899996666 5899999999999999 5567644 68899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHH-Hh
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVKAAPD------DCYVLASHAHFLWDADEDEED-EQ 244 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~------~~~~~~~la~il~~~Ge~eea-~~ 244 (270)
+|.++.. +|++++|+.+|++++++.++ ...+++++|.++..+|++++| ..
T Consensus 202 lg~~y~~-~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 202 HAKALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9987777 99999999999999988653 278999999999999999998 54
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.21 E-value=1.3e-10 Score=103.23 Aligned_cols=96 Identities=10% Similarity=-0.029 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASH 229 (270)
Q Consensus 150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~l 229 (270)
|.++.++..+|..++ ..|++++|+++|++||+++|+++.++.++|.++.. +|++++|+.+|+++++++|++..+++.+
T Consensus 1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 678899999997777 48999999999999999999999999999977777 9999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHhccC
Q 024243 230 AHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 230 a~il~~~Ge~eea~~~~e 247 (270)
|.++..+|++++|....+
T Consensus 79 g~~~~~~g~~~~A~~~~~ 96 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQ 96 (281)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 999999999999986543
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.18 E-value=2.8e-11 Score=108.27 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=104.9
Q ss_pred cccccCCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPR--N----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMY 194 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~--n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~l 194 (270)
..|...+++++|+.+|++++++.+. + ..++.++|.++ .. |++++|+++|++|+++.|.. ..++.++
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~-~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 4566778999999999999998543 2 46788899555 45 99999999999999998754 5788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCC
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQ 258 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~ 258 (270)
|.++.. +|++++|+.+|++++++.|++ ..++..++.++..+|+++++....+... ..|.|..
T Consensus 162 g~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 162 SRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 987777 999999999999999987654 3478888999999999999998776633 6777654
No 135
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=4.6e-11 Score=103.23 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=103.2
Q ss_pred cccccCCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh--------CCCCHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQAD--------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------SPNDGNV 190 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeld--------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel--------dP~n~~a 190 (270)
..|...+++++|+.+|++++++. |....++..+|.++. ..|++++|+++|++++++ +|....+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 44566789999999999999984 667788999996666 589999999999999999 7888889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------------------CCC
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKA-------------------------------------------------APD 221 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~-------------------------------------------------~P~ 221 (270)
+..+|.++.. +|++++|+.+|+++++. +|.
T Consensus 198 ~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 276 (311)
T 3nf1_A 198 KNNLASCYLK-QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT 276 (311)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch
Confidence 9999988877 99999999999999984 466
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 222 DCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 222 ~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
...++..+|.++...|++++|....
T Consensus 277 ~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 277 VTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7889999999999999999998653
No 136
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=1.8e-10 Score=106.67 Aligned_cols=117 Identities=19% Similarity=0.267 Sum_probs=97.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE--ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---SHKDAS 206 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~--~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~---~~g~~e 206 (270)
.+++++|+.+|+++++++|+++.++..++.+++. ..+++++|++.|++|++++|++..++..++..+.. ..++++
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------C
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHH
Confidence 3589999999999999999999999999966542 24778899999999999999999999998855443 246788
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|+.+|+++++.+|++..++..+|.++...|+.+++....+.
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 999999999999999999999999999999999999865433
No 137
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=4.9e-11 Score=103.09 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=102.9
Q ss_pred cccccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CCCHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNV 190 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~n~~a 190 (270)
..|...|++++|+.+|++++++ +|....++..+|.++. ..|++++|+++|++++++. |....+
T Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 3455678999999999999988 4667889999996666 5899999999999999984 667788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKA--------APDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~--------~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+..+|.++.. .|++++|+.+|++++++ +|....++..++.++...|+++++....
T Consensus 156 ~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 218 (311)
T 3nf1_A 156 LNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218 (311)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999977777 99999999999999998 7777889999999999999999998543
No 138
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.16 E-value=7.7e-11 Score=91.33 Aligned_cols=116 Identities=11% Similarity=0.042 Sum_probs=97.1
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYG 195 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA 195 (270)
.|...+++++|+.+|++++++.+... .++..+|.++. ..|++++|+++|++++++.+.. ..++..+|
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 96 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 96 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 45567899999999999999866432 57888996666 5899999999999999987653 66888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 196 DLIWQSHKDASRAESYFDQAVKAAPD------DCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 196 ~ll~~~~g~~e~A~~~~ekAL~~~P~------~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.+++. .|++++|+.++++++++.+. ...++..++.++...|+.+++...
T Consensus 97 ~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 97 NTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHH-HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 77777 99999999999999987432 256889999999999999998864
No 139
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.16 E-value=6.9e-10 Score=96.00 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=76.7
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS-- 201 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~----~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~-- 201 (270)
.|...+++++|+.+|+++++ |+++.+++.+|.++. . .+++++|+++|++|++++ ++.++..+|.+ +..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~-~~~g~ 88 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNL-YYSGQ 88 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH-HHHTS
T ss_pred HHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH-HhCCC
Confidence 34455677777777777777 677777777774444 4 577777777777777764 67777777743 334
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHhc
Q 024243 202 --HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQV 245 (270)
Q Consensus 202 --~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~~ 245 (270)
.+++++|+.+|+++++. +++.++..+|.+|.. .++.+++...
T Consensus 89 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 67777777777777776 367777777777777 7777777643
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.16 E-value=9.6e-11 Score=103.60 Aligned_cols=115 Identities=10% Similarity=0.044 Sum_probs=94.2
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh-------CCCCHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILM-------SPNDGNVLSMY 194 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel-------dP~n~~al~~l 194 (270)
+|...+++++|+.+|++++++.+.. ..++.++|.++. ..|++++|+++|++|++. .+....++.++
T Consensus 124 ~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nl 202 (293)
T 3u3w_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 3445679999999999999975543 337889996666 589999999999999952 23345688999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCc-HHHHh
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADED-EEDEQ 244 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~-eea~~ 244 (270)
|.+++. +|++++|+.++++++++.++. ..+++++|.++..+|+. ++|..
T Consensus 203 g~~y~~-~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 203 AKALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHH-HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 988887 999999999999999987644 88999999999999964 77764
No 141
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=1.8e-10 Score=106.71 Aligned_cols=115 Identities=18% Similarity=0.138 Sum_probs=90.2
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS-------- 201 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~-------- 201 (270)
...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|++|++++|+++.++..+|.++...
T Consensus 224 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR-RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp ------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 34568889999999999999999999999996666 579999999999999999999999998888654321
Q ss_pred ----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 202 ----------HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 202 ----------~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
...+++|+.+|+++++.+|++..++..+|.++...|++++|...
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 356 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHH
Confidence 23466788888888888888888888888888888888888754
No 142
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.15 E-value=1.7e-10 Score=110.22 Aligned_cols=121 Identities=15% Similarity=0.188 Sum_probs=106.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~-~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~ 205 (270)
.+++..|++++|...|+++++++|.++ .+|..++.++. ..|++++|.++|++|++..|.+...+...+.+.+...|++
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH
T ss_pred HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh
Confidence 445667899999999999999999985 69999997776 4799999999999999999988888888886655558999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++|..+|+++++.+|+++.++..++.++...|+.+++....+.
T Consensus 408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 9999999999999999999999999999999999998865433
No 143
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.14 E-value=3.5e-11 Score=92.26 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=71.7
Q ss_pred hCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243 167 RGDLLKAEEYCARAILM---SPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIel---dP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~ 243 (270)
.|++++|+++|++||++ +|++..++..+|.+++. +|++++|+.+|+++++++|+++.+++.+|.++...|+++++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 58999999999999999 69999999999988877 999999999999999999999999999999999999999998
Q ss_pred hccC
Q 024243 244 QVGE 247 (270)
Q Consensus 244 ~~~e 247 (270)
...+
T Consensus 82 ~~~~ 85 (117)
T 3k9i_A 82 ELLL 85 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 144
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.13 E-value=9e-11 Score=106.54 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=98.2
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNP----LLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYGDL 197 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~----~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------dP~n~~al~~lA~l 197 (270)
.|...|++++|+.+|+++++++|+++ .++..+|.++. ..|++++|+++|++++++ +|....++..+|.+
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 34567899999999999999999997 58889997776 489999999999999999 68888999999987
Q ss_pred HHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 024243 198 IWQSHKDASRAESYFDQAVKA------APDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 198 l~~~~g~~e~A~~~~ekAL~~------~P~~~~~~~~la~il~~~Ge 238 (270)
++. .|++++|+.+|++++++ .|....++..++.++...|+
T Consensus 136 ~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 136 LKV-MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 777 99999999999999999 56678899999999999999
No 145
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.13 E-value=1.1e-10 Score=106.44 Aligned_cols=118 Identities=11% Similarity=-0.014 Sum_probs=100.9
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH------HHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN-------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG------NVLSM 193 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n-------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~------~al~~ 193 (270)
..|...|++++|+.+|++++++.+.. ..++.++|.++. ..|++++|+++|++|+++.+... .++.+
T Consensus 151 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 229 (383)
T 3ulq_A 151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45566789999999999999985443 468889996666 58999999999999999876443 58999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVK-----AA-PDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~-----~~-P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+|.++.. +|++++|+.+|++|++ .+ |....++.++|.++..+|++++|....
T Consensus 230 lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (383)
T 3ulq_A 230 IGLCKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287 (383)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9987777 9999999999999999 46 888999999999999999999998643
No 146
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.12 E-value=1.2e-11 Score=92.01 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=74.4
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGDLIWQ 200 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA~ll~~ 200 (270)
..|...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|+++++++|++ ..++..++.++..
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999997777 4899999999999999999999 8899999976666
Q ss_pred HcCCHHHHHHHHHH
Q 024243 201 SHKDASRAESYFDQ 214 (270)
Q Consensus 201 ~~g~~e~A~~~~ek 214 (270)
.|+++.|+..|++
T Consensus 91 -~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 91 -VGSVQIPVVEVDE 103 (111)
T ss_dssp -HHCCCCCSSSSSS
T ss_pred -HHhHhhhHhHHHH
Confidence 7777777665554
No 147
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.11 E-value=5.4e-11 Score=87.70 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=40.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGN-VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL 226 (270)
Q Consensus 158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~-al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~ 226 (270)
..|..+. ..|++++|+++|+++++++|++.. ++..+|.+++. +|++++|+.+|+++++++|++..++
T Consensus 5 ~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3443444 356666666666666666666666 66666655544 6666666666666666666665555
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.08 E-value=1.7e-10 Score=94.34 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=95.7
Q ss_pred cccccCCChHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh---CCC----CHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQ------ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM---SPN----DGNVLSM 193 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALe------ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel---dP~----n~~al~~ 193 (270)
..|...|++++|+.+|+++++ ..|....++.++|.++. ..|++++|+++|++++++ .++ ...++.+
T Consensus 34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 112 (203)
T 3gw4_A 34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYE 112 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 345567899999999999999 45566788999996666 589999999999999999 443 3567889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCcHHHHhc
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVKAAP--DD----CYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~~~P--~~----~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+|.+++. .|++++|+.++++++++.+ .+ ..++..++.++...|+.+++...
T Consensus 113 lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 169 (203)
T 3gw4_A 113 VATVALH-FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQH 169 (203)
T ss_dssp HHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9977777 9999999999999997643 22 33568999999999999998754
No 149
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.08 E-value=1.3e-10 Score=105.80 Aligned_cols=118 Identities=11% Similarity=0.023 Sum_probs=98.9
Q ss_pred cccccCCChHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------HHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQA---DP---RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSM 193 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALel---dP---~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-------~~al~~ 193 (270)
.+|...|++++|+.+|++++++ .+ ..+.+++.+|.+++ ..|++++|+++|++|+++.+.. ..++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3445678999999999999997 23 35689999997776 5899999999999999995543 468899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHhcc
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVKAAPDDC------YVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~------~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+|.++.. +|++++|+.+|++|+++.+... .++.++|.++..+|++++|....
T Consensus 190 lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 190 FATNFLD-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHH-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9977777 9999999999999999866433 58999999999999999998653
No 150
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.08 E-value=2.2e-10 Score=98.96 Aligned_cols=110 Identities=9% Similarity=0.060 Sum_probs=95.4
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNP----LLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYGD 196 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~----~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------dP~n~~al~~lA~ 196 (270)
..+...|++++|+.+|+++++.+|+++ .++..+|.++. ..|++++|+++|++++++ .|....++..+|.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 344567899999999999999999994 67889997766 589999999999999988 5666789999997
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 024243 197 LIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADE 238 (270)
Q Consensus 197 ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge 238 (270)
++.. .|++++|+.+|++++++.+.. ..++..++.++...|+
T Consensus 92 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 92 TLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 7777 999999999999999987643 4489999999999999
No 151
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.07 E-value=2.9e-09 Score=92.08 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cC
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS----HK 203 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~----~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~----~g 203 (270)
.+++++|+.+|+++++.+ ++.+++.+|.++. . .+++++|+++|++|++. +++.++..+|.+ +.. .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~-~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGI-YHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH-HHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHH-HHcCCCccc
Confidence 346666666666666664 5666666664433 4 56666666666666665 366666666633 333 56
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHh
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQ 244 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~ 244 (270)
++++|+.+|+++++.+ +..++..++.++.. .++.+++..
T Consensus 129 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 6666666666666654 45666666666666 566665554
No 152
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=2.4e-09 Score=105.30 Aligned_cols=113 Identities=10% Similarity=0.038 Sum_probs=101.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD----------LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK 203 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd----------~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g 203 (270)
-.++|+..++++++.+|++..+|+..+.++.. .++ +++|+++++++|+++|++..+|...++++.. .+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~-l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc
Confidence 34788999999999999999999999977764 677 9999999999999999999999999988877 89
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHhccCC
Q 024243 204 --DASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD-EDEEDEQVGEE 248 (270)
Q Consensus 204 --~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~G-e~eea~~~~e~ 248 (270)
++++|+++++++++.+|++..+|...+.++...+ .++++.+.-+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~ 169 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 169 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 7799999999999999999999999999999999 66666554333
No 153
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=5.8e-10 Score=99.14 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=86.6
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL 226 (270)
Q Consensus 147 eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~ 226 (270)
+.-|++...+..+|..+. ..|++++|+++|+++++++|+++.++..+|.++.. .|++++|+.+|+++++.+|+.....
T Consensus 111 ~~lp~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~ 188 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLM-QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQG 188 (287)
T ss_dssp HHSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred HHcCCchhhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHH
Confidence 334999999999997777 48999999999999999999999999999988877 9999999999999999999878777
Q ss_pred HHHHHHHHHcCCcHHHHhccC
Q 024243 227 ASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 227 ~~la~il~~~Ge~eea~~~~e 247 (270)
...+..+...++.+++....+
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~ 209 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQ 209 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHH
Confidence 778877888888777665433
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.06 E-value=4.6e-09 Score=92.70 Aligned_cols=116 Identities=11% Similarity=-0.010 Sum_probs=95.7
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPL------LLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGD 196 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~------al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA~ 196 (270)
|...+++++|+.+|+++++..+.... .++.+|.++. ..|++++|+++|++|+++.+.. ..++.++|.
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34567999999999999999887653 3455664444 5789999999999999876544 668999997
Q ss_pred HHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCcHHHHhcc
Q 024243 197 LIWQSHKDASRAESYFDQAV---KAAPDDC----YVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 197 ll~~~~g~~e~A~~~~ekAL---~~~P~~~----~~~~~la~il~~~Ge~eea~~~~ 246 (270)
++.. +|++++|+.+|++|+ +..|++. .++.++|.+|..+|++++|....
T Consensus 164 ~y~~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 164 IYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 7777 999999999999999 5567643 68999999999999999998643
No 155
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.05 E-value=2.3e-10 Score=102.52 Aligned_cols=117 Identities=11% Similarity=0.006 Sum_probs=98.2
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPL------LLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMY 194 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~------al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~l 194 (270)
..|...|++++|+.+|++++++.|.... ++.++|.++. ..|++++|+++|++++++.|.. ..++..+
T Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 273 (406)
T 3sf4_A 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 273 (406)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH
Confidence 3455568999999999999998766543 8889996666 4899999999999999988866 7788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHhc
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~~ 245 (270)
|.++.. .|++++|+.+|++++++.+.. ..++..++.++...|+++++...
T Consensus 274 a~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 274 GNTYTL-LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHH-hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 977777 999999999999999886644 77889999999999999988753
No 156
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.05 E-value=3.9e-10 Score=101.04 Aligned_cols=110 Identities=9% Similarity=0.060 Sum_probs=96.0
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNP----LLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYGD 196 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~----~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------dP~n~~al~~lA~ 196 (270)
..+...|++++|+.+|+++++++|+++ .++..+|.+++ ..|++++|+++|++|+++ .|....++..+|.
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 345567899999999999999999994 67889997666 589999999999999988 4566789999998
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 024243 197 LIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADE 238 (270)
Q Consensus 197 ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge 238 (270)
+++. .|++++|+.+|++++++.|.. ..++..+|.++...|+
T Consensus 96 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 96 TLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 7777 999999999999999997753 5599999999999999
No 157
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.04 E-value=1.2e-09 Score=78.25 Aligned_cols=73 Identities=23% Similarity=0.297 Sum_probs=66.0
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~ 200 (270)
..|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..++.++..
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34566789999999999999999999999999997776 48999999999999999999999999999976654
No 158
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.01 E-value=2.2e-10 Score=104.71 Aligned_cols=113 Identities=8% Similarity=-0.102 Sum_probs=93.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHcC
Q 024243 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-----------------NVLSMYGDLIWQSHK 203 (270)
Q Consensus 141 ~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-----------------~al~~lA~ll~~~~g 203 (270)
.+...++..+.....+..+|..++ ..|+|++|+.+|++||+++|++. .++.++|.+++. ++
T Consensus 167 ~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g 244 (338)
T 2if4_A 167 RSDMTVEERIGAADRRKMDGNSLF-KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LK 244 (338)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHTC-SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 334444455666788899997776 58999999999999999999887 489999977766 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN 255 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~ 255 (270)
++++|+.+|+++++++|++..+++++|.+|..+|++++|....+....+.|.
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999776554444443
No 159
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.01 E-value=2e-09 Score=81.46 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024243 149 DPRNPLLLSNYARFLKEARGD--LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCY 224 (270)
Q Consensus 149 dP~n~~al~~lA~~l~~~~Gd--~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~ 224 (270)
+|+++.++..+|.+++...+. .++|..++++|+++||+++.+++.+|.++++ .|+|++|+.+|+++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcc
Confidence 799999999999999754332 7999999999999999999999999988888 99999999999999999998543
No 160
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.01 E-value=1e-09 Score=104.77 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------hCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEA------RGDLL-------KAEEYCARAIL-MSPNDGNVLSMYGDLIWQS 201 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~------~Gd~~-------eA~e~~ekAIe-ldP~n~~al~~lA~ll~~~ 201 (270)
+.++..|+++++.+|+++.+|..+|.++... .|+++ +|.+.|++|++ ++|++..+|..++.++..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~- 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES- 333 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence 4788999999999999999999999776631 58987 99999999997 899999999999976666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 202 HKDASRAESYFDQAVKAAPDDC-YVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P~~~-~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.|++++|..+|+++++++|+++ .+|..++.++...|+.+++....+.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999985 6999999999999998888865444
No 161
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=6e-09 Score=95.25 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc---CC
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLI----WQSH---KD 204 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll----~~~~---g~ 204 (270)
..++|+..+.++|++||++..+|+..+.++. ..+ ++++|++++.++|.++|++..+|...+.++ .. . ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-NNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-TTTCCC
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-ccccCC
Confidence 3478999999999999999999999997776 467 999999999999999999999999999877 44 5 78
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH--HHHh
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDE--EDEQ 244 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~e--ea~~ 244 (270)
+++++.+++++++.+|++..+|...+.++...+..+ ++-+
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 999999999999999999999999999999999876 5443
No 162
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.00 E-value=2.4e-10 Score=103.68 Aligned_cols=116 Identities=11% Similarity=-0.072 Sum_probs=98.6
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPL------LLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMY 194 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~------al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~l 194 (270)
..|...|++++|+.+|++++++.|.... ++..+|.++. ..|++++|+++|++++++.+.. ..++..+
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456678999999999999998876543 8889996666 5899999999999999998854 7788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHh
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~ 244 (270)
|.++.. +|++++|+.+|++++++.++. ..++..++.++...|+++++..
T Consensus 310 a~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 310 GNTYTL-LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 977777 999999999999999986532 5589999999999999999874
No 163
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=6e-10 Score=99.57 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=97.8
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--C----HHHHHH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--D----GNVLSM 193 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--n----~~al~~ 193 (270)
+..|...+++++|+.+|++++++.+.. ..++.++|.++. ..|++++|+++|++|+++.+. + ..++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK-DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 355677899999999999999997643 567888996665 579999999999999999643 2 467888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+|.++ .. |++++|+.+|++|+++.|.. ..++.++|.++..+|++++|....
T Consensus 122 lg~~~-~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 178 (307)
T 2ifu_A 122 AGKLM-EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL 178 (307)
T ss_dssp HHHHH-TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHH-Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99555 43 99999999999999998754 678999999999999999998643
No 164
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.99 E-value=4.1e-10 Score=97.22 Aligned_cols=117 Identities=11% Similarity=0.010 Sum_probs=93.0
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYG 195 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA 195 (270)
.|...|++++|+.+|+++++..+... .++..+|.++. ..|++++|+++|++++++.+.. ..++..+|
T Consensus 192 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 44556789999999999988765433 37888886666 4799999999999999887765 77888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 196 DLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 196 ~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
.++.. .|++++|+.+|++++++.+.. ..++..++.++...|+.+++....
T Consensus 271 ~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 271 NTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHH-hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 77776 899999999999998876532 558888999999999988888643
No 165
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.99 E-value=5.9e-09 Score=76.55 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=75.2
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPL-LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~-al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e 206 (270)
.|...+++++|+..|+++++.+|+++. +++.+|.++. ..|++++|+++|+++++++|++..++.. +.+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~---------~~~~ 78 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR---------KMVM 78 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH---------HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH---------HHHH
Confidence 455678999999999999999999999 9999997776 4899999999999999999999988743 4467
Q ss_pred HHHHHHHHHHHhCCCCH
Q 024243 207 RAESYFDQAVKAAPDDC 223 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~ 223 (270)
+|+.+|++++..+|++.
T Consensus 79 ~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 79 DILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHhccCcccc
Confidence 78899999998888753
No 166
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.97 E-value=8.7e-10 Score=100.53 Aligned_cols=118 Identities=14% Similarity=-0.101 Sum_probs=100.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC------CCHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPR-------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSP------NDGNVLSM 193 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~-------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP------~n~~al~~ 193 (270)
..|...++++.|+.++++++++.+. ...++.++|.++. ..|++++|+++|++|+++.+ ....++.+
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 227 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556678999999999999998543 2457789996666 58999999999999999743 23467889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVK-----AAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~-----~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+|.++.. +|++++|+.+|+++++ .+|....++..+|.++..+|+.++|....
T Consensus 228 lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 284 (378)
T 3q15_A 228 IANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284 (378)
T ss_dssp HHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9977777 9999999999999999 78888999999999999999999998653
No 167
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=1.3e-09 Score=92.48 Aligned_cols=110 Identities=10% Similarity=0.084 Sum_probs=69.4
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---H
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG----DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---S 201 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G----d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~---~ 201 (270)
|...+++++|+.+|+++++. +++.+++++|.++. . + ++++|+++|++|++ ++++.+++++|.++.. .
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~ 101 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKI-R-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAG 101 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGS
T ss_pred HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCC
Confidence 33446777777777777654 56677777774433 2 5 67777777777744 5667777777744332 1
Q ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCcHHHHh
Q 024243 202 HKDASRAESYFDQAVKAAP--DDCYVLASHAHFLWD----ADEDEEDEQ 244 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P--~~~~~~~~la~il~~----~Ge~eea~~ 244 (270)
.+++++|+.+|+++++..| +++.+++++|.+|.. .++.+++..
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4567777777777777666 346777777777766 556666654
No 168
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=3.6e-09 Score=89.75 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH---cCC
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---ARGDLLKAEEYCARAILMSP--NDGNVLSMYGDLIWQS---HKD 204 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~---~~Gd~~eA~e~~ekAIeldP--~n~~al~~lA~ll~~~---~g~ 204 (270)
.++++|+.+|++++ +++++.+++++|.++.. +.+++++|+++|++|++.+| +++.+++++|.++... .++
T Consensus 67 ~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 67 ADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 38999999999995 46899999999955542 15799999999999999988 4599999999555542 578
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CcHHHHh
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDA-D-----EDEEDEQ 244 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~-G-----e~eea~~ 244 (270)
+++|+.+|+++++. |.++.++++++.+|..- | +.+++..
T Consensus 145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~ 189 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALH 189 (212)
T ss_dssp HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence 99999999999998 77888999999999864 2 5666654
No 169
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.96 E-value=4.3e-09 Score=79.72 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 172 KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 172 eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
+|+++|+++++.+|+++.+++.+|.+++. .|++++|+.+|+++++++|++..+++.+|.++...|+++++....
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 58899999999999999999999987777 999999999999999999999999999999999999999998653
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.96 E-value=3e-10 Score=94.81 Aligned_cols=81 Identities=11% Similarity=0.061 Sum_probs=71.6
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD----------ASRAESYFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~----------~e~A~~~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
+.++|++|++.|++|++++|+++++|.++|.++.. .++ +++|+..|++||+++|++..+++++|++|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 35789999999999999999999999999987766 665 4699999999999999999999999999998
Q ss_pred cC-----------CcHHHHhccC
Q 024243 236 AD-----------EDEEDEQVGE 247 (270)
Q Consensus 236 ~G-----------e~eea~~~~e 247 (270)
+| ++++|....+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHH
Confidence 85 7888876533
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.96 E-value=8.9e-10 Score=102.44 Aligned_cols=94 Identities=13% Similarity=0.009 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAIL----------------MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAV 216 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe----------------ldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL 216 (270)
+..+..+|..++ ..|++++|+++|++||+ ++|.+..++.++|.+++. ++++++|+.++++|+
T Consensus 223 a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence 456788997777 48999999999999999 888999999999987777 999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 217 KAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 217 ~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+++|++..+++.+|.+|..+|++++|....+.
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999876554
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.95 E-value=3.6e-09 Score=86.30 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=92.5
Q ss_pred cCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcC
Q 024243 131 NNHGNNSTDLYYQKMIQADP-RNPLLLSNYARFLKEARGDLLKAEEYCARAIL------MSPNDGNVLSMYGDLIWQSHK 203 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP-~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe------ldP~n~~al~~lA~ll~~~~g 203 (270)
..|++++|+..++.+.. +| ....++..+|.++. ..|++++|+++|+++++ ..+....++.++|.++.. .|
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-AG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TT
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cC
Confidence 35799999996665544 55 67899999996666 58999999999999999 556677889999977777 99
Q ss_pred CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 204 DASRAESYFDQAVKA---APDD----CYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~---~P~~----~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
++++|+.+|++++++ .+++ ..++.++|.++...|+++++....
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999998 4433 567999999999999999998643
No 173
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=9e-09 Score=94.05 Aligned_cols=106 Identities=12% Similarity=0.066 Sum_probs=97.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------H
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLL--KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD------A 205 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~--eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~------~ 205 (270)
++++++.++.++++.+|.|..+|+..+.++. ..++++ ++++++.++|++||.|..+|...+.++.. .++ +
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~-l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS-KKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS-SGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-ccccchhhhH
Confidence 6799999999999999999999999996665 579988 99999999999999999999999977766 776 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ee 241 (270)
+++++++++++..+|+|..+|..++.++...|+..+
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChH
Confidence 999999999999999999999999999999998444
No 174
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=3.6e-09 Score=93.38 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=91.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLL------LSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGDLI 198 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~a------l~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA~ll 198 (270)
..+++++|+.+|+++++..+.++.. +..+|.++. ..+++++|+++|++|+++.+.. ..++.++|.++
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 4579999999999999988887652 334664444 4689999999999999976543 33789999777
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 199 WQSHKDASRAESYFDQAVKAA-------PDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 199 ~~~~g~~e~A~~~~ekAL~~~-------P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
.. +|++++|+.+|++|++.. +....+++++|.+|+.+|++++|...
T Consensus 166 ~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 166 AE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77 999999999999999531 22356889999999999999999864
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=7.6e-09 Score=101.72 Aligned_cols=100 Identities=9% Similarity=0.057 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 024243 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-DASRAESY 211 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-~~e~A~~~ 211 (270)
+++++.+++++++.+|++..+|+..+.++. ..+ ++++|+++|+++|++||.|..+|...++++.. .+ .+++++++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH-cCCChHHHHHH
Confidence 899999999999999999999999996665 578 77999999999999999999999999988777 88 99999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~ 236 (270)
++++++.+|.+..+|..++.++..+
T Consensus 167 ~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9999999999999999999999886
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.90 E-value=6.3e-10 Score=106.69 Aligned_cols=94 Identities=12% Similarity=-0.077 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHF 232 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~i 232 (270)
+.++..+|..++ ..|++++|+++|++|++++|++..++.++|.+++. +|++++|+.+|++|++++|++..+++++|.+
T Consensus 6 a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 6 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HTTSSSSSSSTT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344556665555 47999999999999999999999999999987777 9999999999999999999999999999999
Q ss_pred HHHcCCcHHHHhccCC
Q 024243 233 LWDADEDEEDEQVGEE 248 (270)
Q Consensus 233 l~~~Ge~eea~~~~e~ 248 (270)
|..+|++++|....+.
T Consensus 84 ~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 84 NMALGKFRAALRDYET 99 (477)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 9999999999865443
No 177
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.87 E-value=2.2e-09 Score=97.82 Aligned_cols=117 Identities=12% Similarity=-0.032 Sum_probs=96.7
Q ss_pred ccccCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-------CHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQAD------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-------DGNVLSMY 194 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeld------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-------n~~al~~l 194 (270)
+|...|++++|+.+|++++++. +..+.+++++|.+++ ..|++++|++++++|+++.+. ...++.++
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3455789999999999999873 234678999997666 589999999999999998653 24578899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPD------DCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~------~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
|.++.. +|++++|+.+|++|+++.+. ...++.++|.++..+|++++|....
T Consensus 189 g~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 189 AGNYDD-FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHH-hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 977777 99999999999999987431 3568899999999999999998653
No 178
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.86 E-value=2.6e-08 Score=82.48 Aligned_cols=101 Identities=11% Similarity=0.014 Sum_probs=89.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG---DLLKAEEYCARAILMS-P-NDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G---d~~eA~e~~ekAIeld-P-~n~~al~~lA~ll~~~~g~~e~ 207 (270)
.....+...|.+.++.++.+..+.++||.++.. .. ++.+++.+++..++.+ | ++.++++++|..+++ .++|++
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHH
Confidence 467888999999999999999999999987774 45 7789999999999999 7 679999999977776 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWD 235 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~ 235 (270)
|+.+++++|+++|+|.++......+--.
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~ 117 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELERLIDKA 117 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998887766543
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=2.8e-08 Score=92.63 Aligned_cols=106 Identities=8% Similarity=-0.010 Sum_probs=97.0
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-DASRAESY 211 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G-d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-~~e~A~~~ 211 (270)
..++|+.++.++|++||++..+|+..+.++.. .+ ++++++++++++|+++|++..+|...++++....+ ++++++.+
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTS-LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 45789999999999999999999999977774 67 69999999999999999999999999988877337 89999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADEDE 240 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~e 240 (270)
++++++.+|++..+|...+.++...+..+
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999998888765
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.81 E-value=7.2e-08 Score=89.15 Aligned_cols=102 Identities=9% Similarity=0.034 Sum_probs=93.7
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD-ASRAES 210 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~-~e~A~~ 210 (270)
.+++++.++.++++.+|++..+|+..+.++. ..+ ++++++++|.+++++||.|..+|...+.++.. .+. ++++++
T Consensus 89 ~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~-~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~ 166 (331)
T 3dss_A 89 LVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHH
Confidence 3789999999999999999999999996665 467 59999999999999999999999999987776 888 699999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDAD 237 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~G 237 (270)
++.++++.+|.|..+|..++.++....
T Consensus 167 ~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 167 FTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999998874
No 181
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.81 E-value=9.2e-09 Score=92.71 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=92.1
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CCCHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNVLSM 193 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~n~~al~~ 193 (270)
.|...|++++|+.+|++++++.|... .++.++|.++. ..|++++|+++|++++++. |....++.+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 34456789999999999998765432 33667885655 4799999999999999876 334567778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVKAAPD-----DCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~-----~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
+|.+++. .|++++|+.++++++++.+. ...++..++.++...|+.+++....+
T Consensus 141 la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 198 (373)
T 1hz4_A 141 RAQLLWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN 198 (373)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8877777 89999999999999998875 24678889999999999988886543
No 182
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.80 E-value=1.6e-08 Score=91.13 Aligned_cols=117 Identities=14% Similarity=0.182 Sum_probs=95.4
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPL-----LLSNYARFLKEARGDLLKAEEYCARAILMSPNDG------NVLSMYGDL 197 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~-----al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~------~al~~lA~l 197 (270)
+...|++++|+.+++++++..|.+.. ++..+|.++. ..|++++|++++++++++.|... .++.++|.+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34568999999999999999886632 5678886665 57999999999999999876432 336788877
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 198 IWQSHKDASRAESYFDQAVKAA--------PDDCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 198 l~~~~g~~e~A~~~~ekAL~~~--------P~~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
++. .|++++|+.+|++++++. |....++..++.+++..|+++++....+
T Consensus 103 ~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 103 LFA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 159 (373)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH-CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777 999999999999999875 3346678889999999999999986543
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=8.2e-08 Score=88.79 Aligned_cols=107 Identities=10% Similarity=0.036 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD----------LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-- 203 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd----------~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-- 203 (270)
++|+.++.++|.+||++..+|+..+.++.. .++ ++++++++.++|..+|.+..+|...++++.. .+
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~-l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-CSSC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-cCcc
Confidence 589999999999999999999999977764 454 7899999999999999999999999988776 77
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-HHHHh
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADED-EEDEQ 244 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~-eea~~ 244 (270)
.+++++.++.++++.+|+|..+|...+.++...+.. +++-+
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 499999999999999999999999999999999984 55443
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.80 E-value=7.1e-09 Score=100.50 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=90.0
Q ss_pred ccCCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-----CCCHH---HHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQA-----DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDGN---VLSM 193 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALel-----dP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-----P~n~~---al~~ 193 (270)
..+|++++|+..|+++|++ .|++ ...++++|.++. .+|+|++|+.+|+++|++. |+++. .+.+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4679999999999999986 3444 567788996665 5899999999999999875 56654 5788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHcCCcHHHH
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVKA-----APDDCYVL---ASHAHFLWDADEDEEDE 243 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~~-----~P~~~~~~---~~la~il~~~Ge~eea~ 243 (270)
+|.+++. +|++++|+.+|++|+++ .|+|+.+. ..++.++..++.+++++
T Consensus 399 La~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 399 AGLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877776 99999999999999986 57776655 56677777777777776
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.76 E-value=1.3e-07 Score=75.24 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=86.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---SHKDASRAE 209 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~---~~g~~e~A~ 209 (270)
+++++|+.+|+++.+....... +|.++. ..+.+++|+++|++|.+. +++.+++++|.++.. ..+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5899999999999998754444 884444 467899999999999986 789999999955543 168999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHhc
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQV 245 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~~ 245 (270)
.+|++|.+. .++.++++++.+|.. .++.+++...
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 119 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKT 119 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 999999987 689999999999999 7888887753
No 186
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.73 E-value=1.8e-07 Score=74.43 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=79.3
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS-- 201 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~---~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~-- 201 (270)
..|.....+++|+.+|+++.+. +++.+++++|.++.. +.+|+++|+++|++|.+. .++.+++++|.++..-
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 4555566788899999999997 899999999955553 158999999999999986 7899999999554431
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243 202 -HKDASRAESYFDQAVKAAPDDCYVLASHAH 231 (270)
Q Consensus 202 -~g~~e~A~~~~ekAL~~~P~~~~~~~~la~ 231 (270)
.+++++|+.+|++|.+.. ++.+..+++.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~~ 137 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG--SEDACGILNN 137 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT--CHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHCC--CHHHHHHHhh
Confidence 689999999999999974 5666665543
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=3.9e-09 Score=95.69 Aligned_cols=116 Identities=9% Similarity=-0.113 Sum_probs=96.8
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND--GNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n--~~al~~lA~ll~~~~g~~e 206 (270)
+...|++++|...|+.++..+|++. +++.+|..++ ..+++++|+.+|++++...++. ..+++++|.++.. +|+++
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG~~~ 188 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LALFT 188 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CCCHH
Confidence 4556899999999999999999999 9999996555 5899999999999888753221 3588999966665 99999
Q ss_pred HHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 207 RAESYFDQAVKAA--PD-DCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 207 ~A~~~~ekAL~~~--P~-~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
+|+.+|++++... |. ...+++.+|.++..+|+.++|....+
T Consensus 189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998544 55 66799999999999999999986543
No 188
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.72 E-value=5.6e-08 Score=90.55 Aligned_cols=104 Identities=7% Similarity=0.012 Sum_probs=95.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH------
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS------ 206 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G-d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e------ 206 (270)
.+++++.+++++|+.+|++..+|+..+.++....+ +++++++++.++|+++|.|..+|...++++.. .+.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~-l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH-FSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH-HHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccccccchhh
Confidence 68999999999999999999999999977764327 99999999999999999999999999987766 67776
Q ss_pred --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 207 --RAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 207 --~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
+++++++++++.+|.|..+|..++.++...+.
T Consensus 183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999886
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.69 E-value=3.9e-08 Score=75.77 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=76.8
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN------DGNVLSMY 194 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~------n~~al~~l 194 (270)
..|...+++++|+.+|++++++.+.. ..++.++|.++. ..|++++|++++++++++.+. ...++..+
T Consensus 57 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 135 (164)
T 3ro3_A 57 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 135 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHH
Confidence 34556789999999999999986553 678889996666 589999999999999988532 25678889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKAAPD 221 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~~P~ 221 (270)
|.+++. .|++++|+.++++++++...
T Consensus 136 a~~~~~-~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 136 GNAYTA-LGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHH-HTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHHHHH
Confidence 977777 99999999999999988654
No 190
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.69 E-value=8e-08 Score=90.90 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR----GDLLKAEEYCARAILMSPNDGNVLSMYGDLIW--QSHKDASR 207 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~----Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~--~~~g~~e~ 207 (270)
++++|+.+|+++++..|.++..++++|.++. .. +++++|+++|++|. |+++.+++++|.+++ ...+++++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH
Confidence 7777888888888887777777777774443 22 47777777777776 777777777776644 33677777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CcHHHHhc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDAD-----EDEEDEQV 245 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~G-----e~eea~~~ 245 (270)
|+.+|+++++. .++.+++++|.+|. .| +.+++...
T Consensus 270 A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 270 MMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 77777777754 36777777777776 44 55555544
No 191
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.68 E-value=5.2e-08 Score=88.72 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=78.8
Q ss_pred CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCH
Q 024243 133 HGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPND-GNVLSMYGDLIWQSHKDA 205 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~----~Gd~~eA~e~~ekAIeldP~n-~~al~~lA~ll~~~~g~~ 205 (270)
.....|...+++++++||+ +..+|..+|.+++.+ .|+.++|.++|+|||+++|+. ..+++.||..+...++++
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4789999999999999999 677999999554431 399999999999999999975 999999998887756999
Q ss_pred HHHHHHHHHHHHhCCC
Q 024243 206 SRAESYFDQAVKAAPD 221 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~ 221 (270)
++|..++++|+..+|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999999886
No 192
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.66 E-value=1e-07 Score=91.02 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=78.8
Q ss_pred cCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-----CCCHH---HHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQA-----DPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDGN---VLSMY 194 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALel-----dP~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-----P~n~~---al~~l 194 (270)
..|+|++|+..|+++|++ .|+++ ..+.++|.++. .+|+|++|+.+|+++|++. |+++. .+.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 357899999999999986 45654 56778886665 5899999999999999874 55554 57888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKA-----APDDCYVLASHA 230 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~-----~P~~~~~~~~la 230 (270)
|.+++. +|++++|+.+|++|+++ .|+|+.+.....
T Consensus 389 a~~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 389 GRLYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 877777 99999999999999987 688887765443
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.65 E-value=9.6e-08 Score=71.35 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=56.7
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 183 ldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
.+|+++.+++.+|.+++. .|++++|+.+|+++++++|+++.+++.+|.++...|++++|....
T Consensus 2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 589999999999987877 999999999999999999999999999999999999999998643
No 194
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.65 E-value=1.2e-07 Score=89.59 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----CH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLK--EARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-----DA 205 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~--~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-----~~ 205 (270)
+++++|+.+|+++. |+++.+++++|.+++ ...+++++|+++|++|++ ++++.+++++|.++. .| ++
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~--~G~g~~~d~ 303 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY--EGKWVPADA 303 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH--HCSSSCCCH
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH--cCCCCCCCH
Confidence 68999999999998 999999999997645 457999999999999996 459999999996555 46 99
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHh
Q 024243 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQ 244 (270)
Q Consensus 206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~ 244 (270)
++|+.+|++|. +.++.+++++|.+|.. ..+.+++..
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 99999999999 8899999999988876 236666654
No 195
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.63 E-value=4.4e-07 Score=85.66 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG---DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---HKDAS 206 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G---d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~---~g~~e 206 (270)
+++++|+.+|+++++. +++.+++++|.++.. .| ++++|+++|++|++. +++.+++++|.++... .++++
T Consensus 310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFR-LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh-CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 5777777777777765 456677777754443 24 677777777777775 5677777777444431 46777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHh
Q 024243 207 RAESYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQ 244 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~ 244 (270)
+|+.+|++|++.. ++.+++++|.+|.. .++.++|..
T Consensus 385 ~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 385 QAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 7888888777753 57777777777777 667666654
No 196
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.61 E-value=6e-07 Score=68.14 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024243 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMS-------PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCY 224 (270)
Q Consensus 152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-------P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~ 224 (270)
++.-.+.+|..++. .++|.+|+..|++|++.. +....++..+|.++++ +|++++|+.+++++++++|++..
T Consensus 4 sa~dc~~lG~~~~~-~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHH-ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHH
Confidence 34556789988885 799999999999999974 3567899999988887 99999999999999999999999
Q ss_pred HHHHHHH
Q 024243 225 VLASHAH 231 (270)
Q Consensus 225 ~~~~la~ 231 (270)
++.++..
T Consensus 82 ~~~n~~~ 88 (104)
T 2v5f_A 82 ANGNLKY 88 (104)
T ss_dssp HHHHHHH
T ss_pred HHhhHHH
Confidence 9888873
No 197
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.59 E-value=8.2e-07 Score=83.76 Aligned_cols=106 Identities=8% Similarity=0.024 Sum_probs=71.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCC
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---HKD 204 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~----~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~---~g~ 204 (270)
.+++++|+.+|+++++. +++.+++.+|..+. . .+++++|+++|++|++. +++.+++.+|.++... .++
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYM-NGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 45777777777777765 56777777774444 3 56777777777777763 4677777777544331 457
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHh
Q 024243 205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQ 244 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~ 244 (270)
+++|+.+|+++++. +++.+++.+|.+|.. .++.+++..
T Consensus 131 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 131 KAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 77777777777664 467777777777766 556666553
No 198
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.49 E-value=3.1e-07 Score=87.33 Aligned_cols=97 Identities=13% Similarity=-0.013 Sum_probs=78.5
Q ss_pred cCCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-----CCCHH---HHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQA-----DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDGN---VLSMY 194 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALel-----dP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-----P~n~~---al~~l 194 (270)
.++++++|+..|++++++ .|++ ...+.++|.++. .+|+|++|+++|+++|++. |+++. .++++
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 457999999999999975 4555 466778886665 5899999999999999875 56655 57788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKA-----APDDCYVLASH 229 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~-----~P~~~~~~~~l 229 (270)
|.+++. +|++++|+.+|++|+++ .|+|+.+...+
T Consensus 378 a~~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 378 GKLQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 877777 99999999999999987 68888766543
No 199
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.43 E-value=1.2e-06 Score=82.19 Aligned_cols=114 Identities=8% Similarity=-0.057 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--hC--C--HHHHH-HHHH--HHHHhCCCCHHHHHHHHHHHHHHcC
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA--RG--D--LLKAE-EYCA--RAILMSPNDGNVLSMYGDLIWQSHK 203 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~--~G--d--~~eA~-e~~e--kAIeldP~n~~al~~lA~ll~~~~g 203 (270)
.++.+|+.+|++|++++|+++.++..++.++... .+ . ...++ ..++ .++..+|.++.++..++.+++. .|
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~-~g 291 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV-KG 291 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-CC
Confidence 3568999999999999999999998877555321 11 1 11111 1222 2346679999999999966666 79
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
++++|+.++++|+.++| +...+..+|.++...|+.+++.+..+.
T Consensus 292 d~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 292 KTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999997 578889999999999999999976554
No 200
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.42 E-value=5.3e-07 Score=81.62 Aligned_cols=103 Identities=8% Similarity=-0.195 Sum_probs=82.9
Q ss_pred ccccCCChHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHc
Q 024243 128 WDPNNHGNNSTDLYYQKMIQAD-PRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMS--PN-DGNVLSMYGDLIWQSH 202 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeld-P~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~-n~~al~~lA~ll~~~~ 202 (270)
.|.+.+++++|+.+|+++++.. |.. ..+++++|.++. ..|++++|+.+|++++... |. ..++++.+|.++.. +
T Consensus 144 l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-l 221 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-Q 221 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-H
T ss_pred HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-c
Confidence 3455689999999999887753 222 358899996666 5899999999999999655 65 66799999966666 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 203 KDASRAESYFDQAVKAAPDDCYVLASHAHFL 233 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il 233 (270)
|+.++|..+|++++..+|+ +.+...+...-
T Consensus 222 Gr~deA~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 222 GNESAAVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp TCHHHHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 9999999999999999998 88777765433
No 201
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.33 E-value=9.9e-07 Score=80.86 Aligned_cols=117 Identities=10% Similarity=0.030 Sum_probs=91.7
Q ss_pred ccccccCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHH
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADP--RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNVLSMY--GDL 197 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP--~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~----n~~al~~l--A~l 197 (270)
+..|...|++++|+..+.+.+..+| ++..++..++.++. ..|+.++|.+.+++..+.+|+ +-.++..+ +++
T Consensus 107 a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v 185 (310)
T 3mv2_B 107 ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYI 185 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHH
Confidence 3455667899999999999999997 88888888886666 589999999999999999993 23333344 544
Q ss_pred HHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243 198 IWQSHK--DASRAESYFDQAVKAAPD--DCYVLASHAHFLWDADEDEEDEQVGE 247 (270)
Q Consensus 198 l~~~~g--~~e~A~~~~ekAL~~~P~--~~~~~~~la~il~~~Ge~eea~~~~e 247 (270)
.+. .| ++++|..+|+++.+..|+ ....+++ ++..+|++++|+..++
T Consensus 186 ~l~-~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 186 KFA-TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHH-HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred HHH-hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 555 45 899999999999988886 3445555 8999999999997643
No 202
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.30 E-value=2.4e-06 Score=64.76 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=58.7
Q ss_pred ccccCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQAD-------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeld-------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.+..+++|..|+..|++|++.. +..+.++..+|.+++. .|++++|+.++++|++++|++..++.++.
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3455689999999999999973 3457899999988874 89999999999999999999999988887
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.30 E-value=1.6e-06 Score=78.88 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CCc
Q 024243 169 DLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSH-----KDASRAESYFDQAVKAAPDD-CYVLASHAHFLWDA-DED 239 (270)
Q Consensus 169 d~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~-----g~~e~A~~~~ekAL~~~P~~-~~~~~~la~il~~~-Ge~ 239 (270)
...+|...++|||++||+ +..+|..+|.++.. . |+.++|..+|++|++++|+. ..+++.+|..+... ++.
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~-vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA-APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH-SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh-CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 358899999999999999 77799999955554 5 99999999999999999975 99999999999885 888
Q ss_pred HHHHhccCCCCCCCC
Q 024243 240 EEDEQVGEEPAPPSY 254 (270)
Q Consensus 240 eea~~~~e~~~~~~p 254 (270)
++++..++.....||
T Consensus 257 ~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 257 AGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHcCCC
Confidence 998887766333343
No 204
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.20 E-value=1.6e-05 Score=63.72 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG---DLLKAEEYCARAILMS-P-NDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G---d~~eA~e~~ekAIeld-P-~n~~al~~lA~ll~~~~g~~e~A 208 (270)
....+...|.+.+..++....+.++||..|.. .. +..+++.+++..+..+ | ...+.++.+|..+++ .|+|++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHHH
Confidence 46678889999999999999999999977763 34 4456999999999987 6 677899999977777 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
..+++.+|++.|++.++......+--
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999998877766543
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.18 E-value=3.6e-06 Score=63.30 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 184 SPNDGNVLSMYGDLIWQSHKD---ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 184 dP~n~~al~~lA~ll~~~~g~---~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
+|++++++..+|.+++. .++ .++|..+|++|++++|+++.+++.+|.+++..|++++|...-+.
T Consensus 2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 69999999999999876 444 79999999999999999999999999999999999999976555
No 206
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.15 E-value=1.5e-05 Score=80.15 Aligned_cols=108 Identities=11% Similarity=0.062 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAE-EYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~-e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
+.....|+++|...|.++.+|..+|.++. ..|+.++|. +.|++|+...|.+...|..++.+... .+++++|..+|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~-~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQG-EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 45678999999999999999999997776 479999997 99999999999999999999977666 9999999999999
Q ss_pred HHHh-----------CCC-----------CHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 215 AVKA-----------APD-----------DCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 215 AL~~-----------~P~-----------~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+++. .|. .+.+|..++.+..+.++.+.+...
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9975 253 456899999998888888877754
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.13 E-value=2.3e-06 Score=78.37 Aligned_cols=110 Identities=13% Similarity=0.011 Sum_probs=84.7
Q ss_pred cccccccCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHH-HHHhhC--CHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 024243 125 WGSWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARF-LKEARG--DLLKAEEYCARAILMSPN--DGNVLSMYG 195 (270)
Q Consensus 125 gg~~Ye~~gd~~eA~~~y~kALeldP~----n~~al~~lA~~-l~~~~G--d~~eA~e~~ekAIeldP~--n~~al~~lA 195 (270)
....|-.+|+.+.|.+.++++.+.+|+ +-..+..++.. +....| ++.+|..+|+++.+..|+ ....+++
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-- 219 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-- 219 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH--
Confidence 345566679999999999999999993 22333344422 222346 999999999999988886 3444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCC
Q 024243 196 DLIWQSHKDASRAESYFDQAVKA----------APDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 196 ~ll~~~~g~~e~A~~~~ekAL~~----------~P~~~~~~~~la~il~~~Ge 238 (270)
++.. +|++++|...++++++. +|+++.++.++..+...+|+
T Consensus 220 -~~~~-~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 220 -LHLQ-QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp -HHHH-HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred -HHHH-cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 4555 99999999999988876 59999999999999999997
No 208
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=7.8e-06 Score=74.45 Aligned_cols=115 Identities=8% Similarity=0.010 Sum_probs=90.5
Q ss_pred ccccCCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADP------RNPLLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYG 195 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP------~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------dP~n~~al~~lA 195 (270)
++...+++++|+.++++++...+ .-..++.++|.++. ..|+|.+|..++++++.. .+...+++..++
T Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
T 4b4t_Q 104 FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLES 182 (434)
T ss_dssp HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 34456789999999999988643 23678889996666 489999999999999876 344567888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHcCCcHHHHh
Q 024243 196 DLIWQSHKDASRAESYFDQAVKAAP---DD----CYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 196 ~ll~~~~g~~e~A~~~~ekAL~~~P---~~----~~~~~~la~il~~~Ge~eea~~ 244 (270)
.++.. .+++++|..+|++++.+.+ +. ..++..++.++...++++++..
T Consensus 183 ~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 183 KVYHK-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHH-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88887 9999999999999998743 22 3456677888888888888864
No 209
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=4.5e-06 Score=76.03 Aligned_cols=117 Identities=8% Similarity=0.032 Sum_probs=94.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC------CCHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSP------NDGNVLSMY 194 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP------~n~~al~~l 194 (270)
..|...|++++|+.+|+++++..+... .+...++ .++...|++++|+++|++++...+ .-..++..+
T Consensus 63 ~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 63 QLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIE-KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHH-HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 456778899999999999998866543 2344556 344457999999999999998754 236788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 195 GDLIWQSHKDASRAESYFDQAVKA------APDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 195 A~ll~~~~g~~e~A~~~~ekAL~~------~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
|.++.. .|++++|..++++++.. .+....++..++.++..+|+++++...
T Consensus 142 a~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 197 (434)
T 4b4t_Q 142 ATLHYQ-KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKAS 197 (434)
T ss_dssp HHHHHH-HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH-ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 988887 99999999999999876 333467999999999999999998854
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.07 E-value=2.5e-05 Score=73.19 Aligned_cols=81 Identities=10% Similarity=-0.033 Sum_probs=68.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024243 146 IQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYV 225 (270)
Q Consensus 146 LeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~ 225 (270)
+..+|.++.++..++..+. ..|++++|+.++++|++++| +..+|..+|.++.. .|++++|++.|++|+.++|... .
T Consensus 270 ~~~~~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~~-t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGAN-T 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSHH-H
T ss_pred cccCCcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcC-h
Confidence 3568999999999985555 47999999999999999997 57788888977776 9999999999999999999765 4
Q ss_pred HHHHH
Q 024243 226 LASHA 230 (270)
Q Consensus 226 ~~~la 230 (270)
++...
T Consensus 346 ~~~~~ 350 (372)
T 3ly7_A 346 LYWIE 350 (372)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44433
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.04 E-value=7.7e-06 Score=77.96 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=65.2
Q ss_pred hCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHH
Q 024243 167 RGDLLKAEEYCARAILMS-----PNDGN---VLSMYGDLIWQSHKDASRAESYFDQAVKA-----APDD---CYVLASHA 230 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeld-----P~n~~---al~~lA~ll~~~~g~~e~A~~~~ekAL~~-----~P~~---~~~~~~la 230 (270)
.|+|++|+++|++++++. |+++. ++.++|.++.. +|+|++|+.+++++|++ .|++ ...+.++|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 478999999999999963 66664 56778866766 99999999999999987 3444 55788999
Q ss_pred HHHHHcCCcHHHHhc
Q 024243 231 HFLWDADEDEEDEQV 245 (270)
Q Consensus 231 ~il~~~Ge~eea~~~ 245 (270)
.+|+.+|++++|+..
T Consensus 390 ~~~~~qg~~~eA~~~ 404 (433)
T 3qww_A 390 RLYMGLENKAAGEKA 404 (433)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhccCHHHHHHH
Confidence 999999999999854
No 212
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=1.3e-05 Score=77.54 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=66.3
Q ss_pred hhCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHH
Q 024243 166 ARGDLLKAEEYCARAILMS-----PNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKA-----APDD---CYVLASH 229 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeld-----P~n~---~al~~lA~ll~~~~g~~e~A~~~~ekAL~~-----~P~~---~~~~~~l 229 (270)
.+|+|++|+.+|++++++. |+++ .++.++|.++.. +|+|++|+.+++++|++ .|+| ...+.++
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5799999999999999875 5555 467788866666 99999999999999987 3555 5578899
Q ss_pred HHHHHHcCCcHHHHhc
Q 024243 230 AHFLWDADEDEEDEQV 245 (270)
Q Consensus 230 a~il~~~Ge~eea~~~ 245 (270)
|.+|+.+|++++|+..
T Consensus 400 a~~~~~~G~~~eA~~~ 415 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGM 415 (490)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHH
Confidence 9999999999999853
No 213
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.00 E-value=2.5e-05 Score=78.44 Aligned_cols=121 Identities=13% Similarity=0.094 Sum_probs=99.9
Q ss_pred cccccCCChHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh-
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQA-----------DPR-----------NPLLLSNYARFLKEARGDLLKAEEYCARAILM- 183 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALel-----------dP~-----------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel- 183 (270)
.+++..+++++|...|+++++. .|. ...+|..++++... .++.+.|.+.|.+|++.
T Consensus 386 ~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 386 EQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-IQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHTG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence 3456789999999999999975 353 45689999977664 69999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 184 SPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 184 dP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.+....+|...|.+-+...+++++|..+|+++++..|+++.++..++.+++..|+.+.+...-+.
T Consensus 465 ~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 465 KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44567788888866666335699999999999999999999999999999999999888865444
No 214
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.90 E-value=3.3e-05 Score=82.91 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=76.5
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
+++..+++++|.+++++ .+.+.+|+++|.++. ..|++++|++.|.+| +|+..+...+..+.+ .|++++
T Consensus 1085 Lie~i~nldrAiE~Aer-----vn~p~vWsqLAKAql-~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEE 1152 (1630)
T 1xi4_A 1085 LIEHIGNLDRAYEFAER-----CNEPAVWSQLAKAQL-QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEE 1152 (1630)
T ss_pred HHHHHhhHHHHHHHHHh-----cCCHHHHHHHHHHHH-hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHH
Confidence 33344455555555553 477899999997666 479999999999886 888999999976666 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
|+++|..|.+..++ +.+...++.+|.++++.++-+..
T Consensus 1153 AIeyL~mArk~~~e-~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1153 LVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred HHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHHHHHH
Confidence 99999999888753 33344577777777766654444
No 215
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.84 E-value=0.0001 Score=79.17 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=80.4
Q ss_pred ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------------------
Q 024243 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------------------ 187 (270)
Q Consensus 126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------------------ 187 (270)
|..|+..|++++|+.+|.++ +++..+..++.++. ..|+|++|+++|+.|++.+++.
T Consensus 1112 AKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~-~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH
Confidence 34557789999999999886 88999999997776 5899999999999988777432
Q ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 188 ---------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 188 ---------~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
...+...|..++. .|+|++|..+|.+| ..|..++.+|.++|++++|.+.
T Consensus 1186 le~fI~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1186 LEEFINGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHH
Confidence 2234456655555 78888888888875 4777788888888887777754
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.83 E-value=2.6e-05 Score=74.06 Aligned_cols=79 Identities=10% Similarity=-0.059 Sum_probs=65.4
Q ss_pred hhCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHH
Q 024243 166 ARGDLLKAEEYCARAILMS-----PNDGN---VLSMYGDLIWQSHKDASRAESYFDQAVKA-----APDD---CYVLASH 229 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeld-----P~n~~---al~~lA~ll~~~~g~~e~A~~~~ekAL~~-----~P~~---~~~~~~l 229 (270)
.+|+|++|+++|++++++. |+++. ++.++|.++.. +|++++|+.++++++++ .|++ ...+.++
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 4799999999999999864 66654 56777766666 99999999999999977 3455 4568899
Q ss_pred HHHHHHcCCcHHHHhc
Q 024243 230 AHFLWDADEDEEDEQV 245 (270)
Q Consensus 230 a~il~~~Ge~eea~~~ 245 (270)
|.+|+.+|++++|...
T Consensus 378 a~~~~~~g~~~eA~~~ 393 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKN 393 (429)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCCHHHHHHH
Confidence 9999999999999854
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.77 E-value=2.3e-05 Score=64.65 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCcHHH
Q 024243 168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK---DASRAESYFDQAVKAA-P-DDCYVLASHAHFLWDADEDEED 242 (270)
Q Consensus 168 Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g---~~e~A~~~~ekAL~~~-P-~~~~~~~~la~il~~~Ge~eea 242 (270)
.....+.+.|+++++.++.+.++.++||+++.+ .+ ++++++.+|+.+++.+ | ++.+.+|++|..+++.+++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 346778889999999999999999999988877 66 6779999999999999 7 6799999999999999999999
Q ss_pred HhccCCCCCCCCC
Q 024243 243 EQVGEEPAPPSYN 255 (270)
Q Consensus 243 ~~~~e~~~~~~p~ 255 (270)
....+.+....|.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9765553333443
No 218
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.70 E-value=0.00041 Score=66.65 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH
Q 024243 137 STDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN 189 (270)
Q Consensus 137 eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~ 189 (270)
.....|++++...|..+.+|..|+.++. ..|+.++|.+.|++|+.. |.+..
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~-~~~~~~~ar~i~erAi~~-P~~~~ 247 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLI-GIGQKEKAKKVVERGIEM-SDGMF 247 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCcHH
Confidence 3444555555555555555555554443 245555555555555555 54433
No 219
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.64 E-value=0.00089 Score=54.59 Aligned_cols=96 Identities=13% Similarity=-0.038 Sum_probs=75.9
Q ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 138 TDLYYQKMIQA---DPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSP-NDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 138 A~~~y~kALel---dP~n~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIeldP-~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
-+..+++-+.. +.-.+...++||.+|.... .+..+++.+++..+..+| ...+.++.+|.-+++ +|+|++|..+
T Consensus 21 eL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~y 99 (144)
T 1y8m_A 21 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRY 99 (144)
T ss_dssp HHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHHH
Confidence 34444444433 3567899999998877532 356789999999999999 566899999966777 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~ 234 (270)
.+.+|++.|+|.++......+--
T Consensus 100 ~d~lL~~eP~n~QA~~Lk~~Ie~ 122 (144)
T 1y8m_A 100 VDTLFEHERNNKQVGALKSMVED 122 (144)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999999998887766653
No 220
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.57 E-value=0.00015 Score=69.42 Aligned_cols=97 Identities=14% Similarity=0.016 Sum_probs=58.2
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A 208 (270)
+...|.+++|+.+|.++ ..|..+|.++. ..|+|++|++.|++| +++.+|......+.. .|+++.|
T Consensus 132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~-~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-~~ef~lA 196 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-GKEFRLA 196 (449)
T ss_dssp -----CTTTHHHHHHHT--------TCHHHHHHHHH-TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHh--------hhHHHHHHHHH-HhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-cCcHHHH
Confidence 34457899999999977 46678887777 479999999999988 467776665555554 5555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
..+..+ +.. ++.....+..+|.+.|+++++..
T Consensus 197 ~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 197 QMCGLH-IVV---HADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHH
Confidence 444443 112 22223344455555555555543
No 221
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.48 E-value=0.00058 Score=55.04 Aligned_cols=84 Identities=14% Similarity=-0.029 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243 152 NPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSP-NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS 228 (270)
Q Consensus 152 n~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIeldP-~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~ 228 (270)
.+...++||.+|.... .+..+++.+++..++.+| ...+.++.+|.-+++ +|+|++|..+.+.+|++.|+|.++...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 5788899998777543 356789999999999999 457899999976777 999999999999999999999999887
Q ss_pred HHHHHHHc
Q 024243 229 HAHFLWDA 236 (270)
Q Consensus 229 la~il~~~ 236 (270)
...|--+.
T Consensus 118 k~~Ie~ki 125 (134)
T 3o48_A 118 KSMVEDKI 125 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665443
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.47 E-value=0.00088 Score=55.31 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243 136 NSTDLYYQKMIQADPRN--------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n--------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~ 207 (270)
++-+..|++|+..-|-. ...|..|| .+. ..+|.++|.+.|+.++.+....+.+|..+|..-.+ +|+..+
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~-ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiR-qgnl~k 112 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELK-AIQEPDDARDYFQMARANCKKFAFVHISFAQFELS-QGNVKK 112 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHH-HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHH-HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cccHHH
Confidence 78889999999987653 57788888 444 36999999999999999988999999999988888 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
|..++.+|+.+.|.....+.. +..-.+.|.
T Consensus 113 ARkILg~AiG~~~k~~~~le~-a~~nl~~~~ 142 (161)
T 4h7y_A 113 SKQLLQKAVERGAVPLEMLEI-ALRNLNLQK 142 (161)
T ss_dssp HHHHHHHHHHTTCBCHHHHHH-HHHHHHTTC
T ss_pred HHHHHHHHhccCCCcHHHHHH-HHHhhhcCC
Confidence 999999999999987665543 434445554
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.45 E-value=0.00062 Score=56.20 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=80.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHhhCCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 146 IQADPRNPLLLSNYARFLKEARGDL------LKAEEYCARAILMSPN--------DGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 146 LeldP~n~~al~~lA~~l~~~~Gd~------~eA~e~~ekAIeldP~--------n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
+-..|+|++.|..|...+- ..|+. ++-.+.|++|+..-|- ....|..|| ++.. .++.++|.+.
T Consensus 6 ~~~~p~~yd~W~~yl~llE-~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~e-i~D~d~aR~v 82 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLE-KNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKA-IQEPDDARDY 82 (161)
T ss_dssp ----CCSHHHHHHHHHHHH-HHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHH-HHCGGGCHHH
T ss_pred eeeCCCCHHHHHHHHHHHH-HcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHH-hcCHHHHHHH
Confidence 3468999999999995554 56988 8889999999998874 556788888 4444 7999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
|+.|+.++...+.+|..+|.+-.++|+...|..-
T Consensus 83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkI 116 (161)
T 4h7y_A 83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQL 116 (161)
T ss_dssp HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999999999999999999998853
No 224
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.18 E-value=0.0016 Score=62.35 Aligned_cols=96 Identities=7% Similarity=-0.058 Sum_probs=77.9
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (270)
Q Consensus 130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~ 209 (270)
...|++++|+..|+++ +++..|.....++.. .|+++.|..+..+ |..+|++ +..+..++ +..|++++|+
T Consensus 159 ~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Y-ek~G~~eEai 227 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-GKEFRLAQMCGLH-IVVHADE---LEELINYY-QDRGYFEELI 227 (449)
T ss_dssp HTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-TTCHHHHHHTTTT-TTTCHHH---HHHHHHHH-HHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-cCcHHHHHHHHHH-HHhCHhh---HHHHHHHH-HHCCCHHHHH
Confidence 3458999999999999 589999988866664 7999999887775 4455544 44555444 5599999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243 210 SYFDQAVKAAPDDCYVLASHAHFLWDA 236 (270)
Q Consensus 210 ~~~ekAL~~~P~~~~~~~~la~il~~~ 236 (270)
.++++++.+++.+..++..++.+|.+-
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999888654
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.13 E-value=0.0013 Score=54.91 Aligned_cols=52 Identities=17% Similarity=0.094 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC
Q 024243 132 NHGNNSTDLYYQKMIQADPRNP---------LLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~---------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld 184 (270)
.+.|+.|+.....++.+..+++ .++..+|..++. +++|.+|+.+|++||+..
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHH
Confidence 4789999999998777654443 377788988885 799999999999987654
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.07 E-value=0.0034 Score=60.18 Aligned_cols=108 Identities=11% Similarity=0.097 Sum_probs=86.4
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
.+++.+.|...|++| +..+....+|...|..-+...++.+.|..+|+++++..|+++..+..++.+... .|+.++|..
T Consensus 298 r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~-~~~~~~aR~ 375 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR-IGDEENARA 375 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence 356789999999999 433345677777775555433479999999999999999999999999976666 899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+|+++ +....++..+..+-...|+.+....
T Consensus 376 l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 376 LFKRL----EKTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHHHS----CCBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99998 4567888888888888888766653
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.76 E-value=0.0049 Score=51.42 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=69.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-----
Q 024243 160 ARFLKEARGDLLKAEEYCARAILMSPNDGN---------VLSMYGDLIWQSHKDASRAESYFDQAVKAA---PDD----- 222 (270)
Q Consensus 160 A~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---------al~~lA~ll~~~~g~~e~A~~~~ekAL~~~---P~~----- 222 (270)
...++. .+.|+-|+-+...++.+..++++ ++..+|+.++. .++|.+|..+|++||+.. +++
T Consensus 27 ik~L~d-~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 27 VRDMAA-AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHH-hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 335664 69999999999998777655444 88999999999 999999999999997552 211
Q ss_pred -----------------HHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 223 -----------------CYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 223 -----------------~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.++.+.++.++..+++.++|...++-
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 26889999999999999999977554
No 228
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.011 Score=59.98 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHH
Q 024243 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEA-RGDLLKAEEYCARAILM--------SPNDG----------NVLSMYG 195 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~-~Gd~~eA~e~~ekAIel--------dP~n~----------~al~~lA 195 (270)
++.|+.++++..+.+|.....+......+... ..+--+|+++..++++- .+.+. ..+..-+
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 57899999999999998765443221112111 23456788888888742 23332 2444445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 196 DLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 196 ~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
..+.. .++++-|+.+.++|+...|.+...|+.|+.+|..+|+++.|--
T Consensus 345 ~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 345 NFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 55555 8999999999999999999999999999999999999999974
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.62 E-value=0.0033 Score=50.08 Aligned_cols=62 Identities=8% Similarity=0.008 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQAD-P-RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 133 gd~~eA~~~y~kALeld-P-~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.+..+++..++..++.+ | ..-..++.+|...+ ..|+|++|.++++..|+++|+|.++.....
T Consensus 52 ~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 52 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35677999999999987 6 57788999997777 589999999999999999999999986655
No 230
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.49 E-value=0.079 Score=50.82 Aligned_cols=112 Identities=17% Similarity=0.047 Sum_probs=89.3
Q ss_pred CCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADP-RNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP-~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e~A 208 (270)
.++++.|...|+++.+..- -|...++.+...+. ..|++++|.++|++..+.. | |...|..+-..+.+ .|+.++|
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~-~g~~~~A 159 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCR-KGDADKA 159 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHH-CCCHHHH
Confidence 4578999999999988742 24566666665666 4799999999999988764 5 66677666656666 9999999
Q ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243 209 ESYFDQAVKAAP-DDCYVLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 209 ~~~~ekAL~~~P-~~~~~~~~la~il~~~Ge~eea~~~~ 246 (270)
..+|++..+..- .+...+..+-..+.+.|+.+++...+
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 999999987642 27888999999999999999998643
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.43 E-value=0.013 Score=47.67 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.+..+++..++..++.+|. .-+.++.+|...+ ..|+|++|.++++..|+++|+|.++.....
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4778999999999999995 5688888997777 589999999999999999999999886655
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.42 E-value=0.0092 Score=47.98 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.+...++..++..++.+|. .-+.++.+|...+ ..|+|++|.++++++++++|+|..+.....
T Consensus 57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3778999999999999995 4788889997777 489999999999999999999999986665
No 233
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.25 E-value=0.066 Score=47.91 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=55.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.++.++|++.+...++.+|.|+.....|-..|+ ..|++++|.+.++-+.+++|........|-
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr 72 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLR 72 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 468999999999999999999999999998888 479999999999999999998776654544
No 234
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.92 E-value=0.042 Score=53.11 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
.+..+|. +.+....+..|..+|++|+.++|+++..+..+|.+... .++.-+|+-+|-+++......+.+..++..++-
T Consensus 154 ~l~~LGD-L~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGD-IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHccc-HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 4456773 33446889999999999999999999999999955544 899999999999999887779999999998876
Q ss_pred Hc
Q 024243 235 DA 236 (270)
Q Consensus 235 ~~ 236 (270)
..
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 235
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.65 E-value=0.36 Score=46.21 Aligned_cols=113 Identities=8% Similarity=-0.013 Sum_probs=85.4
Q ss_pred cCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH--------hhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADP-RNPLLLSNYARFLKE--------ARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIW 199 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP-~n~~al~~lA~~l~~--------~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~ 199 (270)
+.|++++|+.+|+++.+..- -+...++.+-..+.. ..+++++|.++|++..+.. | |..+|..+-..+.
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~ 116 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAV 116 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH
Confidence 35799999999999998732 234444444423321 1234789999999988765 4 7777877776777
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243 200 QSHKDASRAESYFDQAVKAA-PDDCYVLASHAHFLWDADEDEEDEQV 245 (270)
Q Consensus 200 ~~~g~~e~A~~~~ekAL~~~-P~~~~~~~~la~il~~~Ge~eea~~~ 245 (270)
+ .|++++|..+|++..+.. ..+...+..+-..|.+.|+.+++...
T Consensus 117 ~-~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 117 A-KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp H-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h-cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 7 999999999999988763 23788889999999999999999864
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.52 E-value=0.12 Score=47.83 Aligned_cols=99 Identities=10% Similarity=-0.034 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNP----------------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV 190 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~----------------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a 190 (270)
++.+.|...|++|+.+..... .++..++..+. ..|++.+|+..+++++..+|-+..+
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P~~E~~ 207 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREPL 207 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 467778888888888753321 12223343334 4799999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHH
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKA-------APDDCYVLASHAHFLW 234 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~-------~P~~~~~~~~la~il~ 234 (270)
+..+-.+++. .|+..+|+..|+++-+. .| .+.....+..++.
T Consensus 208 ~~~lm~al~~-~Gr~~~Al~~y~~~r~~L~~eLG~~P-~~~l~~l~~~il~ 256 (388)
T 2ff4_A 208 WTQLITAYYL-SDRQSDALGAYRRVKTTLADDLGIDP-GPTLRALNERILR 256 (388)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHSCCC-CHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHc
Confidence 9888877877 99999999999986543 45 4555555555553
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.18 Score=51.14 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA 215 (270)
.+..-+.++. .+|+|+-|+++.++|+..-|.+-..|+.||.+|.. +|+|+.|+-.+.-+
T Consensus 339 LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred HHHHHHHHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence 4444466676 47999999999999999999999999999988888 99999999776654
No 238
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.50 E-value=0.35 Score=43.16 Aligned_cols=63 Identities=27% Similarity=0.296 Sum_probs=56.0
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASH 229 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~l 229 (270)
..|++++|++.+...|+.+|.|......|-.++.. .|++++|..-++-+.+++|+.......+
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~a~~y 71 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQL 71 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 36999999999999999999999999999988887 9999999999999999999765544343
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.26 E-value=0.6 Score=45.50 Aligned_cols=94 Identities=15% Similarity=0.019 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHH------------HHHHcCCHHHH
Q 024243 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARA--------ILMSPNDGNVLSMYGDL------------IWQSHKDASRA 208 (270)
Q Consensus 149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA--------IeldP~n~~al~~lA~l------------l~~~~g~~e~A 208 (270)
.-++...|..+|.... ..++++.|+++|.++ |....++.+.+..++.+ ++...|++++|
T Consensus 677 ~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a 755 (814)
T 3mkq_A 677 DESAEMKWRALGDASL-QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGA 755 (814)
T ss_dssp TCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH
T ss_pred hhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHH
Confidence 4456788888885555 478888888888875 21224444544444332 22225666666
Q ss_pred HHHHHH------HHHh----CCCC---HHHHHHHHHHHHHcCCcHHHH
Q 024243 209 ESYFDQ------AVKA----APDD---CYVLASHAHFLWDADEDEEDE 243 (270)
Q Consensus 209 ~~~~ek------AL~~----~P~~---~~~~~~la~il~~~Ge~eea~ 243 (270)
+++|.+ |+.+ .|.. +.+...++.-+...|+++.++
T Consensus 756 ~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~ 803 (814)
T 3mkq_A 756 KDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSE 803 (814)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred HHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHHH
Confidence 665543 2221 2322 255566666666666644443
No 240
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.73 E-value=0.23 Score=47.90 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=56.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLI 198 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll 198 (270)
..++.|..+|.+|+.++|++...++.+| ++....|+.-+|+-+|-|++....-.+.+..++..++
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLa-vla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLA-ILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHH-HHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHH-HHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 3578999999999999999999999999 6665689999999999999987766888888887544
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.63 E-value=0.61 Score=45.47 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=45.7
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHcCC
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA--------VKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA--------L~~~P~~~~~~~~la~il~~~Ge 238 (270)
.|++++|.++++ .-++...|..+|..+.+ .++++.|+.+|.++ |.....+...+..++.+....|+
T Consensus 665 ~~~~~~A~~~~~-----~~~~~~~W~~la~~al~-~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 665 VGQLTLARDLLT-----DESAEMKWRALGDASLQ-RFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HTCHHHHHHHHT-----TCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHH-----hhCcHhHHHHHHHHHHH-cCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 577777777653 34788999999988887 99999999999985 22224445544455444443333
Q ss_pred cH
Q 024243 239 DE 240 (270)
Q Consensus 239 ~e 240 (270)
.+
T Consensus 739 ~~ 740 (814)
T 3mkq_A 739 FN 740 (814)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.33 E-value=1.2 Score=37.16 Aligned_cols=43 Identities=12% Similarity=0.005 Sum_probs=27.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA 180 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA 180 (270)
.|+++.|....++. ++...|..+|.... .+|+++-|+++|+++
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHh
Confidence 35666666665543 56667777775554 367777777777665
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.06 E-value=1.1 Score=42.00 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=63.9
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHH---HHHHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNV---LSMYGDLI 198 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~a---l~~lA~ll 198 (270)
.+|...|++++|.+.|.++....... ..++....+.... .+|+..+..++.+|-.+- ..+... +..+..++
T Consensus 139 ~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~ 217 (429)
T 4b4t_R 139 EYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIH 217 (429)
T ss_dssp HHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHH
Confidence 56667789999999999988874333 3555555545553 699999999999986553 223332 22333344
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC
Q 024243 199 WQSHKDASRAESYFDQAVKAAP 220 (270)
Q Consensus 199 ~~~~g~~e~A~~~~ekAL~~~P 220 (270)
....++|.+|-.+|..++....
T Consensus 218 ~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 218 CLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp GGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHhChHHHHHHHHHHHhccCC
Confidence 4448999999999998887654
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.83 E-value=2 Score=40.19 Aligned_cols=93 Identities=13% Similarity=0.037 Sum_probs=64.0
Q ss_pred cccccCCChHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC---CCCH---HHHHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADP--RN----PLLLSNYARFLKEARGDLLKAEEYCARAILMS---PNDG---NVLSMY 194 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP--~n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld---P~n~---~al~~l 194 (270)
.+|...|+|.+|...+.++++.-. ++ .+++..-.++++ ..+|+.++..+|.+|.... +-++ ..+...
T Consensus 107 ~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~ 185 (394)
T 3txn_A 107 ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-ALSNLPKARAALTSARTTANAIYCPPKVQGALDLQ 185 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 355667899999999999887521 22 233334444445 4799999999999997654 1233 334445
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHHhCC
Q 024243 195 GDLIWQ-SHKDASRAESYFDQAVKAAP 220 (270)
Q Consensus 195 A~ll~~-~~g~~e~A~~~~ekAL~~~P 220 (270)
+.++.. ..++|.+|..+|-.+++...
T Consensus 186 ~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 186 SGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 556666 59999999999999986544
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.43 E-value=1.4 Score=40.58 Aligned_cols=51 Identities=8% Similarity=-0.097 Sum_probs=45.8
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 024243 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182 (270)
Q Consensus 131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe 182 (270)
..|++++++..+++++..+|-+..++..+-.+++. .|+..+|++.|++.-+
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~-~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYL-SDRQSDALGAYRRVKT 233 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 35899999999999999999999999999988884 7999999999988755
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.62 E-value=4.4 Score=42.57 Aligned_cols=100 Identities=11% Similarity=-0.085 Sum_probs=71.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH---hC--------------------CCCHHHHHHHHHHHHHH
Q 024243 145 MIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL---MS--------------------PNDGNVLSMYGDLIWQS 201 (270)
Q Consensus 145 ALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe---ld--------------------P~n~~al~~lA~ll~~~ 201 (270)
.+..-|.++...+.+|+++. ..|++++|.++|++|-. .+ ..-+..|.... .++..
T Consensus 834 l~~~~~~~~~~~yl~g~~~L-~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~-~LFe~ 911 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYL-KSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLS-KKLFE 911 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHH-HHHHH
T ss_pred HhhhccCCcHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHH-HHHHH
Confidence 34456788888889997777 48999999999988721 11 11223444555 35555
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCCcHHHHhcc
Q 024243 202 HKDASRAESYFDQAVKAAP-DDCY----VLASHAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 202 ~g~~e~A~~~~ekAL~~~P-~~~~----~~~~la~il~~~Ge~eea~~~~ 246 (270)
.+.++.++.....|++..+ ++.. .|.++=..+.+.+++++|...+
T Consensus 912 ~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 912 ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 9999999999999998865 4442 4566667788889999987543
No 247
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=80.76 E-value=25 Score=29.71 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=34.1
Q ss_pred hhCCHHHHHHHHHHHHH--h---------------CCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243 166 ARGDLLKAEEYCARAIL--M---------------SPNDGNVL-SMYGDLIWQSHKDASRAESYFDQAVKAAPDDC 223 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIe--l---------------dP~n~~al-~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~ 223 (270)
...||.+|+..++..|+ . ||.|.+.. ..+|.++-+ .|+.++|+.+|.......|-.+
T Consensus 74 klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq-~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 74 KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTL-SGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHH-hcCHHHhhhHhhhhcCCccccc
Confidence 35777777777777762 1 24555543 334433333 7777777777777777766433
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=79.91 E-value=8.5 Score=31.92 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
.|+...+.+| ...|+++.|.++++.. ++...|..+|..... +|+++-|+.+|++
T Consensus 6 ~D~~~rF~LA----L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 6 QDPHIRFDLA----LEYGNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQT 59 (177)
T ss_dssp SCHHHHHHHH----HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred CChHHHHHHH----HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHH
Confidence 3455555655 3468888888887654 677888888877776 7888877777764
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.53 E-value=1.9 Score=40.20 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHH
Q 024243 134 GNNSTDLYYQKMIQADPR---NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~---n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~ 207 (270)
..++-....+.+.+.+-. -..++..+|.+++. .||+++|.++|.++...-... .+++.....+++. .+++..
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~-~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~ 186 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQ-IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLY 186 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHH-HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHH
Confidence 334444444444443322 34577889977774 899999999999998865433 3556666666676 899999
Q ss_pred HHHHHHHHHHhCC--CCHH----HHHHHHHHHHHcCCcHHHHh
Q 024243 208 AESYFDQAVKAAP--DDCY----VLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 208 A~~~~ekAL~~~P--~~~~----~~~~la~il~~~Ge~eea~~ 244 (270)
+..++.++-.... .++. .....|.+++..+++.+|..
T Consensus 187 ~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~ 229 (429)
T 4b4t_R 187 VKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAK 229 (429)
T ss_dssp HHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 9999999976532 2333 33445667777788888774
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.25 E-value=12 Score=34.91 Aligned_cols=85 Identities=9% Similarity=-0.053 Sum_probs=58.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH----
Q 024243 158 NYARFLKEARGDLLKAEEYCARAILMSP--NDG----NVLSMYGDLIWQSHKDASRAESYFDQAVKAA---PDDCY---- 224 (270)
Q Consensus 158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP--~n~----~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~---P~~~~---- 224 (270)
.+|..++. .|+|.+|.+++.+.++--. ++. +++..-..++.. .+++.++..+|.+|.... +.++.
T Consensus 104 kL~~l~~~-~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFD-TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-LSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHH-hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 68867775 7999999999988877422 222 333333434555 899999999999997654 23443
Q ss_pred HHHHHHHHHH-HcCCcHHHHh
Q 024243 225 VLASHAHFLW-DADEDEEDEQ 244 (270)
Q Consensus 225 ~~~~la~il~-~~Ge~eea~~ 244 (270)
+...-|.++. ..+++.+|..
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~ 202 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFS 202 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHH
Confidence 3444466777 7889998874
No 251
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=77.52 E-value=31 Score=29.07 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=70.2
Q ss_pred cccCCChHHHHHHHHHHHH-----------------hCCCCHHHHH-HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH
Q 024243 129 DPNNHGNNSTDLYYQKMIQ-----------------ADPRNPLLLS-NYARFLKEARGDLLKAEEYCARAILMSPNDGNV 190 (270)
Q Consensus 129 Ye~~gd~~eA~~~y~kALe-----------------ldP~n~~al~-~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a 190 (270)
|...+++..|+..+++.++ .||.+.+.+. .+| .+....|+.++|+.+|.+...++|-.+.+
T Consensus 72 y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a-~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 72 YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG-DLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH-HHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 4556899999999999983 2466666655 456 44445799999999999999999866554
Q ss_pred HHHHH-H----------HHHHHcCCHH-----HHH--------HHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHh
Q 024243 191 LSMYG-D----------LIWQSHKDAS-----RAE--------SYFDQAVKAAPDD-CYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 191 l~~lA-~----------ll~~~~g~~e-----~A~--------~~~ekAL~~~P~~-~~~~~~la~il~~~Ge~eea~~ 244 (270)
-..+- + +........+ ... .+.++..+.-|.- ..+-...+.-|+.+|-.++...
T Consensus 151 EnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~ 229 (242)
T 3kae_A 151 ENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKA 229 (242)
T ss_dssp HHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHH
Confidence 31111 0 0111011111 111 3333444445543 3355667788889998887764
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.47 E-value=18 Score=33.74 Aligned_cols=90 Identities=7% Similarity=0.067 Sum_probs=61.1
Q ss_pred cccccCCChHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhhCCHHHHHHHHHHHH---HhCCCCHH----HHHH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADP--RN----PLLLSNYARFLKEARGDLLKAEEYCARAI---LMSPNDGN----VLSM 193 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP--~n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAI---eldP~n~~----al~~ 193 (270)
..|+..|++.+|...+.....--- .+ ..++..-.+.++ ..+|+.+|..+++++- ...+.++. .+..
T Consensus 145 ~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l-~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~ 223 (445)
T 4b4t_P 145 EIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI-LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNL 223 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHH
Confidence 345667899999999999764311 11 345555554555 4799999999999873 23344443 3344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 194 YGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 194 lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
++ .++...++|.+|-.+|..+++.
T Consensus 224 ~~-~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 224 LV-KISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HH-HHHHHHCCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHhc
Confidence 44 4444489999999999988765
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=77.39 E-value=27 Score=36.87 Aligned_cols=83 Identities=7% Similarity=-0.124 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCC-
Q 024243 133 HGNNSTDLYYQKMIQA-----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKD- 204 (270)
Q Consensus 133 gd~~eA~~~y~kALel-----dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~- 204 (270)
|+.++|..+|+++.+. .| |...|+.+-..++. .|++++|.++|++..+.. | |...|..+-..+.+ .|+
T Consensus 141 G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck-~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK-~G~~ 216 (1134)
T 3spa_A 141 DQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWAR-QGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGR-QDQD 216 (1134)
T ss_dssp TCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH-HTCC
T ss_pred CCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHh-CCCc
Confidence 5666666666554321 23 33344444444443 466666666666655543 3 44444444434444 444
Q ss_pred HHHHHHHHHHHHHhC
Q 024243 205 ASRAESYFDQAVKAA 219 (270)
Q Consensus 205 ~e~A~~~~ekAL~~~ 219 (270)
.++|..+|++..+..
T Consensus 217 ~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 217 AGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 345556666655543
No 254
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=77.15 E-value=41 Score=35.53 Aligned_cols=88 Identities=9% Similarity=-0.131 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Q 024243 152 NPLLLSNYARFLKEARGDLLKAEEYCARAIL-----MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA-PDDCYV 225 (270)
Q Consensus 152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe-----ldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~-P~~~~~ 225 (270)
....++.+-..++. .|+.++|.++|....+ ..| |...|..+-..+.+ .|++++|..+|++..+.. ..|...
T Consensus 126 ~~~TynaLIdglcK-~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck-~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 126 QQQRLLAFFKCCLL-TDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWAR-QGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34455566667774 7999999999976543 346 77788787777777 999999999999998764 237888
Q ss_pred HHHHHHHHHHcCCc-HHH
Q 024243 226 LASHAHFLWDADED-EED 242 (270)
Q Consensus 226 ~~~la~il~~~Ge~-eea 242 (270)
|..+-..+.+.|+. +++
T Consensus 203 YntLI~glcK~G~~~e~A 220 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTI 220 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHH
Confidence 88888899999985 444
No 255
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=73.02 E-value=23 Score=28.79 Aligned_cols=80 Identities=15% Similarity=0.063 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD 213 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~e 213 (270)
+...-+.+|-+ .+-.+..+-..+- .+- .+|+-++-.+.+...+.-++-+++.+..+|..|-. .|+..+|.+++.
T Consensus 76 NlKrVi~C~~~---~n~~se~vd~ALd-~lv-~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~K-lg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVI---NNTLNEHVNKALD-ILV-IQGKRDKLEEIGREILKNNEVSASILVAIANALRR-VGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHH---TTCCCHHHHHHHH-HHH-HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHH---hcchHHHHHHHHH-HHH-HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHH-hcchhhHHHHHH
Confidence 44555555543 3333333322222 333 46788887777777666666678888888855544 888888888888
Q ss_pred HHHHhC
Q 024243 214 QAVKAA 219 (270)
Q Consensus 214 kAL~~~ 219 (270)
+|.+..
T Consensus 150 ~AC~kG 155 (172)
T 1wy6_A 150 EACKKG 155 (172)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 887754
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.50 E-value=2.9 Score=40.52 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-------~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~ 222 (270)
+.+++.+-+.+. ..+.|++|..+..++. .|.+ ...++.+|.+... +++|.+|.+++..|+...|.+
T Consensus 231 a~l~nllLRnYL-~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFL-NNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHH-HSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHH-ccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcc
Confidence 445555554444 5799999999999995 4532 3445666766666 999999999999999988754
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.15 E-value=41 Score=33.02 Aligned_cols=109 Identities=11% Similarity=0.089 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA---RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~---~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~ 210 (270)
+.+.|...|.+..+...-+......+-..+... .+...++...+.+++... .+......++...++ .++++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr-~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALG-TGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHH-CCCHHHHHH
Confidence 556677777665544333333222222222211 233567777777766544 444445555556666 699999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+|.+.-..........|.+|+.+..+|+.+++..
T Consensus 307 ~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~ 340 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKE 340 (618)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHccccccccHhHHHHHHHHHHHcCCHHHHHH
Confidence 9987655444568888999999999999887764
No 258
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=72.11 E-value=23 Score=30.48 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 024243 135 NNSTDLYYQKMIQA-----DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAIL 182 (270)
Q Consensus 135 ~~eA~~~y~kALel-----dP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe 182 (270)
.+.|...|++|+++ .|.+ .-...|++.++|+..++.++|.++.++|+.
T Consensus 141 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 141 LEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56777777777653 2333 344556676777777777777777777755
No 259
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.22 E-value=11 Score=27.13 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhC
Q 024243 171 LKAEEYCARAILMS 184 (270)
Q Consensus 171 ~eA~e~~ekAIeld 184 (270)
++|+++..+|++.|
T Consensus 9 ~~Ai~lv~~Ave~D 22 (83)
T 2v6y_A 9 DMARKYAILAVKAD 22 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35566666665543
No 260
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=67.05 E-value=11 Score=27.21 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=6.5
Q ss_pred hCCHHHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAI 181 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAI 181 (270)
.|+|++|+.+|..||
T Consensus 32 ~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 32 EGNAEEAITNYKKAI 46 (83)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 344444444444443
No 261
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=66.82 E-value=15 Score=31.69 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQ-----ADPRNPLL---LSNYARFLKEARGDLLKAEEYCARAI 181 (270)
Q Consensus 136 ~eA~~~y~kALe-----ldP~n~~a---l~~lA~~l~~~~Gd~~eA~e~~ekAI 181 (270)
+.|...|++|++ +.|.+|.- ..+++.++|+..++.++|.++.++|+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555543 24444422 22444455554555555555544444
No 262
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=65.12 E-value=19 Score=31.18 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 024243 135 NNSTDLYYQKMIQ-----ADPRNPLL---LSNYARFLKEARGDLLKAEEYCARAI 181 (270)
Q Consensus 135 ~~eA~~~y~kALe-----ldP~n~~a---l~~lA~~l~~~~Gd~~eA~e~~ekAI 181 (270)
.+.|...|++|++ +.|.+|.- ..+++.++|+..++.++|.++.++|+
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666666554 34556532 23555566666666666666555554
No 263
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=65.07 E-value=17 Score=31.97 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHH----hCCCCHH---HHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQ----ADPRNPL---LLSNYARFLKEARGDLLKAEEYCARAI 181 (270)
Q Consensus 136 ~eA~~~y~kALe----ldP~n~~---al~~lA~~l~~~~Gd~~eA~e~~ekAI 181 (270)
+.|...|++|++ +.|.+|. ...+++.++|+..++.++|.++.++|+
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555554 2344442 222444455555555555555555544
No 264
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=64.96 E-value=12 Score=26.95 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182 (270)
Q Consensus 136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe 182 (270)
++|+.+.++|++. ...|+|++|+.+|..||+
T Consensus 9 ~~Ai~lv~~Ave~----------------D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKA----------------DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHH----------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------------HHhccHHHHHHHHHHHHH
Confidence 4666666666554 345666666666555554
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.41 E-value=44 Score=28.23 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=58.6
Q ss_pred HHHHHHHHh---------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 024243 140 LYYQKMIQA---------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDASRA 208 (270)
Q Consensus 140 ~~y~kALel---------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e~A 208 (270)
.+++++++. ||....+|..|+..+ ...+...+.++|.-..... -..+..|..+|..+.. .|++.+|
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~--~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A 134 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF--LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN-AQFFLEA 134 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh--cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHH
Confidence 566776664 444457777777333 1456788889888877766 4678888888855555 9999999
Q ss_pred HHHHHHHHHhCCCC
Q 024243 209 ESYFDQAVKAAPDD 222 (270)
Q Consensus 209 ~~~~ekAL~~~P~~ 222 (270)
..+|+.+++..-.-
T Consensus 135 ~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 135 KVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHTTCBS
T ss_pred HHHHHHHHHcCCcc
Confidence 99999999987543
No 266
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=64.00 E-value=12 Score=26.89 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q 024243 171 LKAEEYCARAILM 183 (270)
Q Consensus 171 ~eA~e~~ekAIel 183 (270)
++|+++..+|++.
T Consensus 17 ~~Ai~lv~~Ave~ 29 (83)
T 2w2u_A 17 EMARKYAINAVKA 29 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555544
No 267
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=63.73 E-value=19 Score=31.45 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=10.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 024243 193 MYGDLIWQSHKDASRAESYFDQA 215 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekA 215 (270)
+++.++|..+++.++|..+.++|
T Consensus 178 NfSVFyYEIln~~~~Ac~lAk~A 200 (248)
T 3uzd_A 178 NYSVFYYEIQNAPEQACHLAKTA 200 (248)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333444445555444443333
No 268
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=63.51 E-value=19 Score=31.66 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHH
Q 024243 158 NYARFLKEARGDLLKAEEYCARAI 181 (270)
Q Consensus 158 ~lA~~l~~~~Gd~~eA~e~~ekAI 181 (270)
+++.++|+..++.++|.++.++|+
T Consensus 182 NfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 182 NFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 334344444444444444444433
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.99 E-value=19 Score=37.73 Aligned_cols=109 Identities=7% Similarity=-0.105 Sum_probs=67.9
Q ss_pred cccccCCChHHHHHHHHHHHH--------------------hC---CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQ--------------------AD---PRNPLLLSNYARFLKEARGDLLKAEEYCARAILM 183 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALe--------------------ld---P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel 183 (270)
+.|-..|++++|..+|+++-. .. ...+.++..+. .+++..+.++.++++.+.||+.
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~-~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLS-KKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHH-HHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Confidence 334456899999999987621 11 11234444555 5666689999999999999998
Q ss_pred CC-CCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 184 SP-NDGN----VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 184 dP-~n~~----al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
.+ ++.. .|.++=..+.. .++|++|...+-..-.. ......+..+-..++..++
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~-l~~ye~Ay~aL~~~pd~-~~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACA-AGKFDAAHVALMVLSTT-PLKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHH-HCCSGGGGHHHHHHHHS-SSCHHHHHHHHHHHHHHCC
T ss_pred ccCCChhhHHHHHHHHHHHHHh-hCCHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCC
Confidence 75 4443 33434333455 89999998777544322 2234555556555665554
No 270
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.70 E-value=11 Score=36.61 Aligned_cols=113 Identities=6% Similarity=-0.036 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHhhCCHHHHH--------------HHHHHH-HHhCC
Q 024243 132 NHGNNSTDLYYQKMI-----------QADPRNPLLLSNYARFLKEARGDLLKAE--------------EYCARA-ILMSP 185 (270)
Q Consensus 132 ~gd~~eA~~~y~kAL-----------eldP~n~~al~~lA~~l~~~~Gd~~eA~--------------e~~ekA-IeldP 185 (270)
++++++|..+-...+ .+|+=++.+|+.++.+ ++..|+..... ..++.| +..|+
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~-~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~ 227 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLS-HETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN 227 (523)
T ss_dssp -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH-HHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence 467777776665444 1255566777777633 33456655421 122222 23344
Q ss_pred CCHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243 186 NDGNV-LSMYGDLIWQSHKDASRAESYFDQAVKAAPDD-------CYVLASHAHFLWDADEDEEDEQVGEE 248 (270)
Q Consensus 186 ~n~~a-l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~-------~~~~~~la~il~~~Ge~eea~~~~e~ 248 (270)
.-... +..+-..|.. .+.++.|..+..++. .|.+ +..++.+|+++..++++.+|.+.+..
T Consensus 228 ~~qa~l~nllLRnYL~-~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 228 ETKAMLINLILRDFLN-NGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp CHHHHHHHHHHHHHHH-SSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHc-cCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33333 3333333455 899999999999995 4532 56777789999999999999877655
No 271
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=62.45 E-value=18 Score=26.56 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 024243 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~ 186 (270)
.-.+.|+.+.++|++.|-.. ++. +...-|.+|+++|..+++..|+
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g-----~y~----eAl~~Y~~Aie~l~~alk~e~~ 54 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAES-----RYQ----QALVCYQEGIDMLLQVLKGTKE 54 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-----CHH----HHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhC-----CHH----HHHHHHHHHHHHHHHHHHHCCC
Confidence 46788898889887773221 111 0112244566666666666654
No 272
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=61.47 E-value=53 Score=28.77 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHH----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 171 LKAEEYCARAIL----MSPNDGN---VLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 171 ~eA~e~~ekAIe----ldP~n~~---al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
++|.+.|+.|++ +-|.++- ...+++.++|..+++.++|..+.++|++.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 568888999886 4577774 34566766888899999998888887753
No 273
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=61.47 E-value=24 Score=31.07 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 024243 136 NSTDLYYQKMIQ-----ADPRNPLL---LSNYARFLKEARGDLLKAEEYCARAI 181 (270)
Q Consensus 136 ~eA~~~y~kALe-----ldP~n~~a---l~~lA~~l~~~~Gd~~eA~e~~ekAI 181 (270)
+.|...|++|++ +.|.+|.. ..+++.++|+..++.++|.++.++|+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555443 23444422 22444455554555555555544443
No 274
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=61.00 E-value=24 Score=28.68 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC
Q 024243 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld 184 (270)
++.-++-.+.+...+..++-++.++..+|.++. ..|+..+|.+++.+|.+.-
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~-Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALR-RVGDERDATTLLIEACKKG 155 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTT
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHH-HhcchhhHHHHHHHHHHhh
Confidence 467778888888877778888999999997777 5899999999999998854
No 275
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.48 E-value=1.1e+02 Score=28.39 Aligned_cols=88 Identities=14% Similarity=0.034 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHH-hC-CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH--
Q 024243 155 LLSNYARFLKEARGDLLKAEEYCARAIL-MS-PND----GNVLSMYGDLIWQSHKDASRAESYFDQAVK---AAPDDC-- 223 (270)
Q Consensus 155 al~~lA~~l~~~~Gd~~eA~e~~ekAIe-ld-P~n----~~al~~lA~ll~~~~g~~e~A~~~~ekAL~---~~P~~~-- 223 (270)
+...|+..+. ..|++.+|..++..... .. ..+ .+++..-..+++. .+++.+|..++.++.. ..+.++
T Consensus 139 l~~~La~i~e-~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~-~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 139 VTKDLVEIKK-EEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL-KGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 3456775555 57999999999887753 21 112 2455555656776 8999999999999742 234444
Q ss_pred --HHHHHHHHHHHHcCCcHHHHh
Q 024243 224 --YVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 224 --~~~~~la~il~~~Ge~eea~~ 244 (270)
.++...+.++...+++.++..
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~ 239 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQ 239 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Confidence 355666777777788877763
No 276
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=59.61 E-value=60 Score=28.43 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 171 LKAEEYCARAIL-----MSPNDGN---VLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 171 ~eA~e~~ekAIe-----ldP~n~~---al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
++|.+.|+.|++ +-|.+|- ...+++.++|..+++.++|..+.++|+..
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 568888988875 4577874 34566766888899999988877776643
No 277
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=58.62 E-value=30 Score=30.15 Aligned_cols=9 Identities=11% Similarity=-0.134 Sum_probs=3.2
Q ss_pred CCHHHHHHH
Q 024243 168 GDLLKAEEY 176 (270)
Q Consensus 168 Gd~~eA~e~ 176 (270)
++.++|.++
T Consensus 188 n~~~~Ac~l 196 (248)
T 3uzd_A 188 NAPEQACHL 196 (248)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 333333333
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.64 E-value=47 Score=34.12 Aligned_cols=79 Identities=13% Similarity=-0.006 Sum_probs=47.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-hC--------------------CCC--HHHHHHHHHHHHH
Q 024243 144 KMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL-MS--------------------PND--GNVLSMYGDLIWQ 200 (270)
Q Consensus 144 kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe-ld--------------------P~n--~~al~~lA~ll~~ 200 (270)
+.+.--|.++..-+-+|+++.. .|++++|.++|++|-. +. ++. ..+|.... -+++
T Consensus 831 eL~~~~~~t~~~~yv~gr~~L~-~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~-~LFE 908 (950)
T 4gq2_M 831 QLIGWLNSDPIAVYLKALIYLK-SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLS-KKLF 908 (950)
T ss_dssp HHGGGCCSSHHHHHHHHHHHHH-TTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHH-HHHH
T ss_pred HHHhhcCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHH-HHHH
Confidence 3444557777777778866664 7888888888876631 11 111 12333333 2444
Q ss_pred HcCCHHHHHHHHHHHHHhC-CCCHH
Q 024243 201 SHKDASRAESYFDQAVKAA-PDDCY 224 (270)
Q Consensus 201 ~~g~~e~A~~~~ekAL~~~-P~~~~ 224 (270)
..+-++-++...+.|++.- ++++.
T Consensus 909 ~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 909 EESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred hcCCHHHHHHHHHHHHhhcccCCcc
Confidence 4777777777777777643 44444
No 279
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=55.61 E-value=20 Score=25.87 Aligned_cols=13 Identities=0% Similarity=0.171 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q 024243 136 NSTDLYYQKMIQA 148 (270)
Q Consensus 136 ~eA~~~y~kALel 148 (270)
..|+.+..+|++.
T Consensus 14 ~~A~~lv~~Ave~ 26 (86)
T 4a5x_A 14 TAAATVLKRAVEL 26 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 280
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=55.34 E-value=22 Score=25.95 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhC
Q 024243 170 LLKAEEYCARAILMS 184 (270)
Q Consensus 170 ~~eA~e~~ekAIeld 184 (270)
.++|++++.+|++.|
T Consensus 12 l~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 12 STAAVAVLKRAVELD 26 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666665543
No 281
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=54.88 E-value=21 Score=25.85 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHHHH
Q 024243 168 GDLLKAEEYCARAI 181 (270)
Q Consensus 168 Gd~~eA~e~~ekAI 181 (270)
|+|++|+.+|..||
T Consensus 30 g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 30 SRYPQALVCYQEGI 43 (86)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444444
No 282
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=52.50 E-value=23 Score=31.34 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVK 217 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~ 217 (270)
+++..+|..+++.++|..+.++|++
T Consensus 201 NfSVFyYEIln~p~~Ac~lAk~AFd 225 (268)
T 3efz_A 201 NYTILKYDLLGNPEGAMKFANRAIQ 225 (268)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333344444555555555554443
No 283
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=51.05 E-value=82 Score=30.83 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek 214 (270)
..++...+.++.....++. ..--+++... ..||++.|..+|++.-..........+-+|..+.. .|+.++|..+|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~-~~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~-~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTS-LIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-RGREAEAKEILHQ 344 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHH-HHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCChH-HHHHHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 4677777777665544433 3334444444 36999999999987655444567777788876666 9999999999999
Q ss_pred HHH
Q 024243 215 AVK 217 (270)
Q Consensus 215 AL~ 217 (270)
+..
T Consensus 345 ~a~ 347 (618)
T 1qsa_A 345 LMQ 347 (618)
T ss_dssp HHT
T ss_pred Hhc
Confidence 875
No 284
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=50.54 E-value=83 Score=27.00 Aligned_cols=51 Identities=6% Similarity=0.031 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 168 GDLLKAEEYCARAILM-----SPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 168 Gd~~eA~e~~ekAIel-----dP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
|+.++|.+.|+.|.++ .|.+ -....+++.+++..+++.++|..+.++|++.
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6678999999999874 2444 4566788878898899999999999999764
No 285
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=50.20 E-value=42 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=11.7
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHH
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNV 190 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~a 190 (270)
.|++++|+.+|-+||...|+-.+.
T Consensus 30 ~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 30 QGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp TTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 455555555555555555544333
No 286
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=49.18 E-value=84 Score=23.89 Aligned_cols=15 Identities=13% Similarity=-0.144 Sum_probs=10.9
Q ss_pred ChHHHHHHHHHHHHh
Q 024243 134 GNNSTDLYYQKMIQA 148 (270)
Q Consensus 134 d~~eA~~~y~kALel 148 (270)
-.+.|+.++.+|++.
T Consensus 14 ~l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 14 NLQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367888888888754
No 287
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=48.89 E-value=3.4 Score=27.33 Aligned_cols=6 Identities=67% Similarity=1.315 Sum_probs=2.8
Q ss_pred eeeccc
Q 024243 96 VLVGGG 101 (270)
Q Consensus 96 ~~~g~g 101 (270)
|+.|||
T Consensus 25 lleggg 30 (62)
T 2i7u_A 25 LLEGGG 30 (62)
T ss_dssp HHHCSS
T ss_pred HHhcCC
Confidence 444544
No 288
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=48.70 E-value=48 Score=30.94 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 024243 173 AEEYCARAILMS-----PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA------APDDCYVLASH 229 (270)
Q Consensus 173 A~e~~ekAIeld-----P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~------~P~~~~~~~~l 229 (270)
++.+|.+||... -.+...|..+|..+++ ++++.+|+.++-.|-.. ..+|.+++-.+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR-~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf 342 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYR-KKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEF 342 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhh-cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence 888999998764 3456667788888888 99999999999887655 23455555444
No 289
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=48.21 E-value=35 Score=24.18 Aligned_cols=18 Identities=6% Similarity=-0.086 Sum_probs=13.4
Q ss_pred HhhCCHHHHHHHHHHHHH
Q 024243 165 EARGDLLKAEEYCARAIL 182 (270)
Q Consensus 165 ~~~Gd~~eA~e~~ekAIe 182 (270)
...|+|++|+.+|..|++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 456888888887777776
No 290
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=47.34 E-value=1.4e+02 Score=28.23 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 024243 151 RNPLLLSNYARFLKEARG--DLLKAEEYCARAILMS-----PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA----- 218 (270)
Q Consensus 151 ~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeld-----P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~----- 218 (270)
..|.++.+|| -+-+..- ....++++|++||... -.+...|..+|..+++ .+++.+|+.++..|-+.
T Consensus 260 ~YPmALgnLg-DLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R-~~~~~eAl~~wa~aa~Vi~~Yn 337 (489)
T 4gq4_A 260 RYPMALGNLA-DLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR-NRNVREALQAWADTATVIQDYN 337 (489)
T ss_dssp TCHHHHHHHH-HHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSC
T ss_pred hcchhhhccc-CHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHH-hhhHHHHHHHhhhhhhhhhhcc
Confidence 3467777777 3333221 2234788999998843 3455566667878888 99999999999987654
Q ss_pred -CCCCHHHHHHHHHH
Q 024243 219 -APDDCYVLASHAHF 232 (270)
Q Consensus 219 -~P~~~~~~~~la~i 232 (270)
..+|.+++-.+-.+
T Consensus 338 Y~reDeEiYke~~eI 352 (489)
T 4gq4_A 338 YCREDEEIYKEFFEV 352 (489)
T ss_dssp CCTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHH
Confidence 34566666555433
No 291
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=47.04 E-value=56 Score=28.13 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024243 171 LKAEEYCARAIL-----MSPNDGN---VLSMYGDLIWQSHKDASRAESYFDQAVK 217 (270)
Q Consensus 171 ~eA~e~~ekAIe-----ldP~n~~---al~~lA~ll~~~~g~~e~A~~~~ekAL~ 217 (270)
++|.+.|+.|++ +-|.+|- ...+++.+++..+++.++|..+.++|++
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888888875 4577874 3456676688889999999888877765
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=46.76 E-value=1e+02 Score=25.91 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 135 NNSTDLYYQKMIQAD--PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (270)
Q Consensus 135 ~~eA~~~y~kALeld--P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al 191 (270)
..++...|..+.... -..+.++-.+|. +++..|++.+|.+.|++.|+.+..-.+-+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~-~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL 152 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSK-LLENAQFFLEAKVLLELGAENNCRPYNRL 152 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 557788888877765 556788888884 44568999999999999999886554443
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.40 E-value=1.2e+02 Score=24.52 Aligned_cols=75 Identities=8% Similarity=0.108 Sum_probs=50.6
Q ss_pred HHHHHHHHHhC---------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHH
Q 024243 139 DLYYQKMIQAD---------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 139 ~~~y~kALeld---------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e~ 207 (270)
..+++++++.. |....+|..|+ ....+ +.++|....... -..+..|..+|.++-. .|++.+
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya----~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~-~~~~~~ 114 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLG----RLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEA-RENFRK 114 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHH----HHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHH----HhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHH
Confidence 34566666553 23345555555 22333 666777766655 5678888888955555 999999
Q ss_pred HHHHHHHHHHhCCC
Q 024243 208 AESYFDQAVKAAPD 221 (270)
Q Consensus 208 A~~~~ekAL~~~P~ 221 (270)
|..+|+.+++....
T Consensus 115 A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 115 ADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999998754
No 294
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=45.08 E-value=61 Score=27.95 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024243 171 LKAEEYCARAIL-----MSPNDGNV---LSMYGDLIWQSHKDASRAESYFDQAVK 217 (270)
Q Consensus 171 ~eA~e~~ekAIe-----ldP~n~~a---l~~lA~ll~~~~g~~e~A~~~~ekAL~ 217 (270)
++|.+.|+.|++ +.|.+|-- ..+++.+++..+++.++|..+.++|++
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667888888865 55778753 456666788879999998887777654
No 295
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=44.72 E-value=54 Score=27.19 Aligned_cols=85 Identities=9% Similarity=-0.125 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW----QSHKDASRAESYFDQAVKAAPDDCYVLAS 228 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~----~~~g~~e~A~~~~ekAL~~~P~~~~~~~~ 228 (270)
..+.+.+|+... .+++|.+|.+.+..|+..-|.+..........++ ..+|++.. ...+++ .+.. .+..
T Consensus 14 v~Y~YYlGr~~~-~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~~--~y~~ 85 (203)
T 3t5x_A 14 VTYKYYVGRKAM-FDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHLM--QFAE 85 (203)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTCG--GGHH
T ss_pred HHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cchh--HHHH
Confidence 345667886666 4799999999999999998866433222221111 22676543 223332 2222 3555
Q ss_pred HHHHHHHcCCcHHHHhcc
Q 024243 229 HAHFLWDADEDEEDEQVG 246 (270)
Q Consensus 229 la~il~~~Ge~eea~~~~ 246 (270)
+..++ +.|+...-++.+
T Consensus 86 L~~Av-r~Gdl~~f~~~l 102 (203)
T 3t5x_A 86 VTRAV-SEGNLLLLHEAL 102 (203)
T ss_dssp HHHHH-HHTCHHHHHHHH
T ss_pred HHHHH-HhCCHHHHHHHH
Confidence 65444 668876666443
No 296
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=42.63 E-value=61 Score=22.79 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHA 230 (270)
Q Consensus 192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la 230 (270)
..+|..+.. .|++++|..+|-+|+.+.|.-...+..+-
T Consensus 21 V~~GE~L~~-~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 21 IQLGEELLA-QGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356776666 89999999999999999997666555443
No 297
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=40.10 E-value=74 Score=30.24 Aligned_cols=57 Identities=5% Similarity=0.036 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 024243 172 KAEEYCARAILMS-----PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA------APDDCYVLASH 229 (270)
Q Consensus 172 eA~e~~ekAIeld-----P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~------~P~~~~~~~~l 229 (270)
.++++|.+||... -.+..-|..+|..+++ ++++.+|+.++-.|-.. ..+|.++|-.+
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR-~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf 364 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR-NRNVREALQAWADTATVIQDYNYCREDEEIYKEF 364 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhh-cchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 3788888888754 3456667788888888 99999999999887654 23456665444
No 298
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.72 E-value=1.4e+02 Score=24.07 Aligned_cols=57 Identities=9% Similarity=0.127 Sum_probs=40.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHH---HHH-HHHH--HHHHcCCHHHHHHHHHHHHHh
Q 024243 160 ARFLKEARGDLLKAEEYCARAILMSPND---GNV---LSM-YGDL--IWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 160 A~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~a---l~~-lA~l--l~~~~g~~e~A~~~~ekAL~~ 218 (270)
+..++. .|+|=+|.+.++.+-...+.. ... +.. +|.. .++ .|+..-|..++.+|+..
T Consensus 39 ~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~-rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 39 GVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFD-FEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 335554 699999999999999887655 223 333 3322 233 79999999999999874
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.30 E-value=65 Score=25.85 Aligned_cols=81 Identities=6% Similarity=0.037 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHH
Q 024243 138 TDLYYQKMIQAD---------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDAS 206 (270)
Q Consensus 138 A~~~y~kALeld---------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e 206 (270)
-..+++++++.. |....+|..|+ ...+.+.++|.-..... -..+..|..+|..+.. .|++.
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya-------~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~ 118 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFA-------EYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEA-QGELQ 118 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHH-------TTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHH-------HhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHH
Confidence 445666666543 33334554444 22233777777776655 4678888888955555 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 024243 207 RAESYFDQAVKAAPDDCYVL 226 (270)
Q Consensus 207 ~A~~~~ekAL~~~P~~~~~~ 226 (270)
+|..+|+.+++....-...+
T Consensus 119 ~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 119 HASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp HHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHHcCCccHHHH
Confidence 99999999999876544333
No 300
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=38.34 E-value=58 Score=32.03 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=21.9
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199 (270)
Q Consensus 167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~ 199 (270)
.|+|.-|.+++..++..+|+|.++...+|.++-
T Consensus 462 ~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~ 494 (658)
T 2cfu_A 462 RGEYRWVVEVVNRLVFAEPDNRAARELQADALE 494 (658)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 467777777777777777777666666665443
No 301
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=38.04 E-value=44 Score=25.50 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=9.1
Q ss_pred hhCCHHHHHHHHHHHHH
Q 024243 166 ARGDLLKAEEYCARAIL 182 (270)
Q Consensus 166 ~~Gd~~eA~e~~ekAIe 182 (270)
..|+|++|+.+|..||+
T Consensus 30 ~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34555555555555544
No 302
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.80 E-value=21 Score=27.57 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 024243 168 GDLLKAEEYCARAILMSP 185 (270)
Q Consensus 168 Gd~~eA~e~~ekAIeldP 185 (270)
..+++|.++..+||++|.
T Consensus 17 ~~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 445666666666666665
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.62 E-value=69 Score=25.99 Aligned_cols=53 Identities=17% Similarity=0.074 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 138 TDLYYQKMIQAD--PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (270)
Q Consensus 138 A~~~y~kALeld--P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al 191 (270)
+..+|..+.... -..+.++-.+| .+++..|++.+|.+.|+++|+.+..-.+-+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA-~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWA-EEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 455566655543 45677788888 445568999999999999999886655544
No 304
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.96 E-value=32 Score=24.61 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=18.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHH
Q 024243 158 NYARFLKEARGDLLKAEEYCARAIL 182 (270)
Q Consensus 158 ~lA~~l~~~~Gd~~eA~e~~ekAIe 182 (270)
.+|+-+.. .|+|+.|+.+|+.+++
T Consensus 17 k~ARe~Al-~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYAL-LGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcChHHHHHHHHHHHH
Confidence 45655554 6999999999998886
No 305
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=36.22 E-value=56 Score=23.10 Aligned_cols=44 Identities=23% Similarity=0.149 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~ 186 (270)
-.+.|+.+..+|++.|-.. ++. +...-|.+|+++|.+++...++
T Consensus 9 ~l~~A~~l~~~Av~~D~~g-----~y~----eAl~~Y~~aie~l~~a~k~e~~ 52 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTAT-----QYE----EAYTAYYNGLDYLMLALKYEKN 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----CHH----HHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHcC-----CHH----HHHHHHHHHHHHHHHHHHhCCC
Confidence 4678888888888764331 122 1123366788888888887764
No 306
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=36.09 E-value=69 Score=31.49 Aligned_cols=47 Identities=15% Similarity=0.033 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243 191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE 238 (270)
Q Consensus 191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge 238 (270)
....|.-.+. .|+|.-|.++.+.++..+|+|..+...++.+|.++|.
T Consensus 452 ~~~~a~~~~~-~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 452 LLEQARASYA-RGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3444544565 8999999999999999999999999999999988874
No 307
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=35.14 E-value=52 Score=28.88 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024243 171 LKAEEYCARAIL-----MSPNDGN---VLSMYGDLIWQSHKDASRAESYFDQAVK 217 (270)
Q Consensus 171 ~eA~e~~ekAIe-----ldP~n~~---al~~lA~ll~~~~g~~e~A~~~~ekAL~ 217 (270)
++|.+.|++|++ +.|.+|- ...+++..++..+++.++|..+.++|++
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667888888865 4577775 3456666678888999998887777764
No 308
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=34.94 E-value=20 Score=26.17 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 168 GDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 168 Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
++..+++.-..++|+.+|+|+.++..|=
T Consensus 24 ~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ 51 (85)
T 2ca5_A 24 QTLQGELTLALDKLAKNPSNPQLLAEYQ 51 (85)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4555666666667777777777665543
No 309
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=34.92 E-value=91 Score=25.76 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=22.4
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCH
Q 024243 127 SWDPNNHGNNSTDLYYQKMIQADPRNP 153 (270)
Q Consensus 127 ~~Ye~~gd~~eA~~~y~kALeldP~n~ 153 (270)
+.|-.+++|.+|...+.+|++.-|...
T Consensus 22 r~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 22 RKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 445567899999999999999988764
No 310
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=34.19 E-value=79 Score=28.24 Aligned_cols=67 Identities=15% Similarity=0.022 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHHHHH----------------HH---hCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243 151 RNPLLLSNYARFLKEARGDLLKAEEYCARA----------------IL---MSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (270)
Q Consensus 151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA----------------Ie---ldP~n~~al~~lA~ll~~~~g~~e~A~~~ 211 (270)
+++..+..+|..++. .+++.+|+.+|-.. .+ -+|...+.+...|.+.+...++...|...
T Consensus 132 Gdp~LH~~~a~~~~~-e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~ 210 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLE-GDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHES 210 (312)
T ss_dssp CCHHHHHHHHHHHHH-TTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred CCHHHHHHHHHHHhh-cCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 588999999988885 69999998877422 12 23455666666675555558899888888
Q ss_pred HHHHHHh
Q 024243 212 FDQAVKA 218 (270)
Q Consensus 212 ~ekAL~~ 218 (270)
|+..++.
T Consensus 211 ~~~f~~~ 217 (312)
T 2wpv_A 211 KDIFLER 217 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766543
No 311
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.86 E-value=2.2e+02 Score=25.83 Aligned_cols=86 Identities=13% Similarity=0.010 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHHhC-------C--------CC--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh-------CCCC
Q 024243 132 NHGNNSTDLYYQKMIQAD-------P--------RN--PLLLSNYARFLKEARGDLLKAEEYCARAILM-------SPND 187 (270)
Q Consensus 132 ~gd~~eA~~~y~kALeld-------P--------~n--~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel-------dP~n 187 (270)
..+.++|.+++++..+.- . .. ..+...+++.+. ..++.++|..+++++-.. +|..
T Consensus 89 ~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl-~~~d~~~a~~~l~~~~~~l~~~~~~~~~v 167 (393)
T 4b4t_O 89 SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYL-LKNDLVKARDLLDDLEKTLDKKDSIPLRI 167 (393)
T ss_dssp TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHSCCSSSHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhhhccCCccHHH
Confidence 457889999988763321 0 12 234445665555 479999999999888643 2222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
...++.....+++..+++..+...+-.++..
T Consensus 168 ~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 168 TNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2333333335666689998888777777753
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.86 E-value=1.7e+02 Score=23.28 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=23.7
Q ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243 208 AESYFDQAVK--AAPDDCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 208 A~~~~ekAL~--~~P~~~~~~~~la~il~~~Ge~eea~~ 244 (270)
+.++|..+.. +.-..+..+...|.++...|++.+|+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 122 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASA 122 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666665553 334566777777777777777777764
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.18 E-value=2.3e+02 Score=24.12 Aligned_cols=76 Identities=7% Similarity=0.029 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCC---------CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHH
Q 024243 139 DLYYQKMIQADP---------RNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDASR 207 (270)
Q Consensus 139 ~~~y~kALeldP---------~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e~ 207 (270)
..+++++++..- ....+|..|+. ..+.+.++|.-..... -..+..|..+|.++.. .|++.+
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~-------~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~ 168 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVN-------YIDEPVELFSFLAHHHIGQESSIFYEEYANYFES-RGLFQK 168 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHT-------TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHH-------ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHH-cCCHHH
Confidence 356666665533 33455555552 2246667777776655 4678888888955555 999999
Q ss_pred HHHHHHHHHHhCCCC
Q 024243 208 AESYFDQAVKAAPDD 222 (270)
Q Consensus 208 A~~~~ekAL~~~P~~ 222 (270)
|..+|+.+++..-.-
T Consensus 169 A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 169 ADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHcCCcc
Confidence 999999999987643
No 314
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.85 E-value=31 Score=26.64 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=11.8
Q ss_pred CChHHHHHHHHHHHHhCC
Q 024243 133 HGNNSTDLYYQKMIQADP 150 (270)
Q Consensus 133 gd~~eA~~~y~kALeldP 150 (270)
..+++|..+..++|++|.
T Consensus 17 ~~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 456667777777776654
No 315
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=32.34 E-value=55 Score=24.26 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243 157 SNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (270)
Q Consensus 157 ~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al 191 (270)
..+|-.+. ..|+++.|+.+|-+||...|+-...+
T Consensus 24 V~lGE~L~-~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 24 IQLGEELL-AQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 45776666 46888999998888888888655544
No 316
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.77 E-value=86 Score=23.30 Aligned_cols=28 Identities=25% Similarity=0.074 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 024243 153 PLLLSNYARFLKEARGDLLKAEEYCARAI 181 (270)
Q Consensus 153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAI 181 (270)
+..+...|..+. ..|+|++|+++.++|.
T Consensus 15 AH~~~RrAe~ll-~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLL-AAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHH-hcCCHHHHHHHHHHHH
Confidence 444445555555 3577777777776664
No 317
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=30.46 E-value=1.4e+02 Score=20.84 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 171 LKAEEYCARAILMSPNDGNVLSMYGDL 197 (270)
Q Consensus 171 ~eA~e~~ekAIeldP~n~~al~~lA~l 197 (270)
+.|+.++++.-....++++.|..+-.+
T Consensus 5 ~dA~~yl~~VK~~F~~~p~~Y~~FL~i 31 (77)
T 2czy_A 5 EDALTYLDQVKIRFGSDPATYNGFLEI 31 (77)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 344444444444444444444444433
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.56 E-value=1e+02 Score=26.29 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH
Q 024243 137 STDLYYQKMIQAD--PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV 190 (270)
Q Consensus 137 eA~~~y~kALeld--P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a 190 (270)
.+..+|..+.... -..+.++-.+|. +++..|++.+|.+.|++.|+.+..-.+-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~-~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYAN-YFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4456666666554 456777778884 4456899999999999999988654433
No 319
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=27.84 E-value=1.7e+02 Score=21.03 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYA 160 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA 160 (270)
.++.|+.|+.++-..--+++..+...-
T Consensus 9 ~~~~A~~YvnkVK~rF~~~p~~Y~~FL 35 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQPDIYKAFL 35 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 455666666666555555555554443
No 320
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=27.59 E-value=70 Score=28.17 Aligned_cols=11 Identities=18% Similarity=0.290 Sum_probs=4.0
Q ss_pred CCHHHHHHHHH
Q 024243 168 GDLLKAEEYCA 178 (270)
Q Consensus 168 Gd~~eA~e~~e 178 (270)
++.++|.++.+
T Consensus 211 n~p~~Ac~lAk 221 (268)
T 3efz_A 211 GNPEGAMKFAN 221 (268)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33333333333
No 321
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.16 E-value=1e+02 Score=22.89 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=10.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 024243 193 MYGDLIWQSHKDASRAESYFDQA 215 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekA 215 (270)
..|..+.. .|+|++|+.+.++|
T Consensus 20 RrAe~ll~-~gkydeAIech~kA 41 (97)
T 2crb_A 20 RRADRLLA-AGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHH
T ss_pred hHHHHHHh-cCCHHHHHHHHHHH
Confidence 34444444 56666555444433
No 322
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=26.67 E-value=44 Score=24.31 Aligned_cols=32 Identities=13% Similarity=0.021 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243 203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234 (270)
Q Consensus 203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~ 234 (270)
++..+++.--.++|+.+|+||..+..+...+.
T Consensus 24 ~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~ 55 (85)
T 2ca5_A 24 QTLQGELTLALDKLAKNPSNPQLLAEYQSKLS 55 (85)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44556777777888899999999888866543
No 323
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=26.33 E-value=1.9e+02 Score=26.92 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024243 171 LKAEEYCARAILMSPN-----------DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP 220 (270)
Q Consensus 171 ~eA~e~~ekAIeldP~-----------n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P 220 (270)
+.-++.++.|+..-|. -..++..+|.+++. ++++++|..+.++++...+
T Consensus 175 ~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~-~~~~~~A~~~a~~vi~~~~ 234 (495)
T 3lew_A 175 AQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLY-ARQWEKAKTYSDKLLAKDN 234 (495)
T ss_dssp HHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCC
Confidence 3455556777766553 23577888888887 8999999999999997643
No 324
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=25.48 E-value=84 Score=23.25 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~ 221 (270)
.+|..+.. .|+++.|+.+|-+|+.+.|.
T Consensus 25 ~lGE~L~~-~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLA-QGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHHcCC
Confidence 34444444 56666666666666666664
No 325
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=24.53 E-value=1.2e+02 Score=21.46 Aligned_cols=62 Identities=8% Similarity=0.135 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (270)
Q Consensus 134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA 195 (270)
.++.|+.+++++-...-+++..+...-.++..-+.+-......++++-++--++++.+..+.
T Consensus 9 ~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn 70 (80)
T 2cr7_A 9 HVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFN 70 (80)
T ss_dssp CSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 67788999999888888888887776655543222222234566666666666666665544
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.91 E-value=1.7e+02 Score=29.85 Aligned_cols=80 Identities=10% Similarity=-0.015 Sum_probs=53.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------
Q 024243 159 YARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA-------------------- 218 (270)
Q Consensus 159 lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~-------------------- 218 (270)
+...+. ..+.++-|.+ .+..-|.++..-+.+|.+++. .|++++|..+|+||-.-
T Consensus 816 l~~~L~-~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~-~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLF-LFKQYNACMQ----LIGWLNSDPIAVYLKALIYLK-SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHH-HTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHH-TTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHH-HhcHHHHHHH----HHhhcCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 343444 3677775544 456668888888899977777 99999999999976421
Q ss_pred -CCC--CHHHHHHHHHHHHHcCCcHHHHh
Q 024243 219 -APD--DCYVLASHAHFLWDADEDEEDEQ 244 (270)
Q Consensus 219 -~P~--~~~~~~~la~il~~~Ge~eea~~ 244 (270)
.++ ...+|.+...++...+-++-..+
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~ 918 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALE 918 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 111 12356666777777777666653
No 327
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=22.21 E-value=2.1e+02 Score=26.36 Aligned_cols=47 Identities=6% Similarity=0.040 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 171 LKAEEYCARAILMSPN--------DGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 171 ~eA~e~~ekAIeldP~--------n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
+.-++-++.|+..-|. -..++..+|.+++. ++++++|..+.++++..
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~-~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLY-KGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhc
Confidence 4456667777776553 24577888888877 89999999999999864
No 328
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.96 E-value=2.4e+02 Score=25.86 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 171 LKAEEYCARAILMSPN--------DGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 171 ~eA~e~~ekAIeldP~--------n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
+.-++.++.|+..-|. -..++..+|.+++. ++++++|..+.++++..
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~-~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLY-HDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHh-cccHHHHHHHHHHHHhC
Confidence 4556667777776553 34577788888877 89999999999999864
No 329
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.38 E-value=2.3e+02 Score=26.37 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC
Q 024243 135 NNSTDLYYQKMIQADPRN-----------PLLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n-----------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld 184 (270)
++..+.-+++|+..=|.. ..++..+|+++.. .++|++|+++++++|...
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~-~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLY-ARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcC
Confidence 455566666776654432 3567778877774 799999999999999753
No 330
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.87 E-value=2.8e+02 Score=21.07 Aligned_cols=63 Identities=14% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243 146 IQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (270)
Q Consensus 146 LeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA 215 (270)
|+..++ .++...+-..-...+|+|++|..+.+..- -| |.+.|..++ -|+ .|-..++...+.+.
T Consensus 33 L~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~p-dlepw~ALc--e~r-lGl~s~le~rL~~l 95 (116)
T 2p58_C 33 LHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA--YP-DLEPWLALC--EYR-LGLGSALESRLNRL 95 (116)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CG-GGHHHHHHH--HHH-HTCHHHHHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC--Cc-hHHHHHHHH--HHh-cccHHHHHHHHHHH
No 331
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=20.69 E-value=1.3e+02 Score=18.22 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHh
Q 024243 205 ASRAESYFDQAVKA 218 (270)
Q Consensus 205 ~e~A~~~~ekAL~~ 218 (270)
|++|+.-|+.+++.
T Consensus 18 yDKAVaSfk~alk~ 31 (37)
T 3s6n_M 18 YDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHhc
Confidence 55666666655554
No 332
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.66 E-value=78 Score=22.51 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243 193 MYGDLIWQSHKDASRAESYFDQAVKA 218 (270)
Q Consensus 193 ~lA~ll~~~~g~~e~A~~~~ekAL~~ 218 (270)
.+|.=+.. .|+|+.|+.||+.+++.
T Consensus 17 k~ARe~Al-~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYAL-LGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcChHHHHHHHHHHHHH
Confidence 45544556 89999999999998865
No 333
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=20.57 E-value=88 Score=22.11 Aligned_cols=64 Identities=6% Similarity=0.071 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243 169 DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHF 232 (270)
Q Consensus 169 d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~i 232 (270)
.++.|+.++++.-....++++.|..+-.++..-..+.......++++-++.-++++.+...-.+
T Consensus 9 ~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn~F 72 (80)
T 2cr7_A 9 HVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAF 72 (80)
T ss_dssp CSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456788888887777788888887776654322222234466677777777777766655443
No 334
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.20 E-value=2.8e+02 Score=29.96 Aligned_cols=71 Identities=10% Similarity=0.021 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCCCCC
Q 024243 184 SPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPSYNF 256 (270)
Q Consensus 184 dP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~p~f 256 (270)
|++|..++..-. .....+++|-+|++++.|+++-.| ....+..++.++..+|-..-+.-+..+ .-..|+.|
T Consensus 1280 d~~d~k~~~~~~-~~~~~~~~~g~~~k~l~k~~~~k~-~~~~~~~~~~~~~~l~w~h~~~~~~~~~~~~~p~~~ 1351 (1354)
T 3lxu_X 1280 DANDSKAIQFAL-WHAYAHGHYGRMYKYVVKLIEEKR-TRDHFVELAAINGALGHEHIRTVINRMMITAFPSSF 1351 (1354)
T ss_dssp CTTSTTTHHHHH-HHHHHHTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHSCSSC
T ss_pred ccCCceeehhHH-HHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHcCCHHHHHHHHhhhhhhCcccC
Confidence 345555443333 333348999999999999999988 567888888899888876666544333 33334444
No 335
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=20.19 E-value=2.6e+02 Score=25.73 Aligned_cols=48 Identities=10% Similarity=-0.035 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 024243 135 NNSTDLYYQKMIQADPRN--------PLLLSNYARFLKEARGDLLKAEEYCARAILM 183 (270)
Q Consensus 135 ~~eA~~~y~kALeldP~n--------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel 183 (270)
++..+.-+++|+..=|.. ..++..+|+++.. .++|++|+++++++|..
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~-~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLY-KGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhc
Confidence 455666677777654432 4667778877774 69999999999999973
Done!