BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024244
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q9H|A Chain A, Crystal Structure Of The C73s Mutant Of Diaminopimelate
Epimerase
Length = 274
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 209 LSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-RVYVGCMK 262
L +T AVSM + ++VDD N+ LG L +H P RV G M+
Sbjct: 141 LRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQ 195
>pdb|1GQZ|A Chain A, Refinement Of Haemophilus Influenzae Diaminopimelate
Epimerase At 1.7a
pdb|2GKE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
With An Irreversible Inhibitor Ll-Azidap
pdb|2GKJ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
With An Irreversible Inhibitor Dl-Azidap
Length = 274
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 209 LSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-RVYVGCMK 262
L +T AVSM + ++VDD N+ LG L +H P RV G M+
Sbjct: 141 LRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQ 195
>pdb|2Q9J|A Chain A, Crystal Structure Of The C217s Mutant Of Diaminopimelate
Epimerase
Length = 274
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 209 LSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-RVYVGCMK 262
L +T AVSM + ++VDD N+ LG L +H P RV G M+
Sbjct: 141 LRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQ 195
>pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae
Length = 274
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 209 LSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-RVYVGCMK 262
L +T AVSM + ++VDD N+ LG L +H P RV G M+
Sbjct: 141 LRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQ 195
>pdb|2OTN|A Chain A, Crystal Structure Of The Catalytically Active Form Of
Diaminopimelate Epimerase From Bacillus Anthracis
pdb|2OTN|B Chain B, Crystal Structure Of The Catalytically Active Form Of
Diaminopimelate Epimerase From Bacillus Anthracis
Length = 308
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255
Y TAVSM + I VDD L TLG L H P
Sbjct: 177 YAFTAVSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPE 216
>pdb|3EJ6|A Chain A, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|B Chain B, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|C Chain C, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|D Chain D, Neurospora Crassa Catalase-3 Crystal Structure
Length = 688
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 176 SATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDA 226
S T GG LDKA +E++ D L++ I YL S +TY A + +DA
Sbjct: 544 STTKGGSLDKAKALKEQLEKDGLKVTVIAEYL-ASGVDQTYSAADATAFDA 593
>pdb|1G6U|A Chain A, Crystal Structure Of A Domain Swapped Dimer
pdb|1G6U|B Chain B, Crystal Structure Of A Domain Swapped Dimer
Length = 48
Score = 27.7 bits (60), Expect = 6.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 61 ELKAVKHESNNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRA 102
EL+A+K E + E+LA +E +Q+ +K+L LK+K+ A++
Sbjct: 8 ELQALKKEGFS-PEELAALESELQALEKKLAALKSKLQALKG 48
>pdb|1OQ4|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|B Chain B, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|C Chain C, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|D Chain D, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|E Chain E, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|F Chain F, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ7|A Chain A, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|B Chain B, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|C Chain C, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|D Chain D, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|E Chain E, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|F Chain F, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ9|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Acetate.
pdb|1OQB|A Chain A, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|B Chain B, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|C Chain C, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|D Chain D, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|E Chain E, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|F Chain F, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|2XZ0|A Chain A, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ0|B Chain B, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ0|C Chain C, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|A Chain A, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|B Chain B, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 363
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 169 IRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAK 212
+R G S TS I +A AEE HGD L YL LS +
Sbjct: 121 VRDETGASPTSWAIWTRAWTAEENRHGDLLN-----KYLYLSGR 159
>pdb|2J2F|A Chain A, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|B Chain B, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|C Chain C, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|D Chain D, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|E Chain E, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|F Chain F, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
Length = 363
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 169 IRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAK 212
+R G S TS I +A AEE HGD L YL LS +
Sbjct: 121 VRDETGASPTSWAIWTRAWTAEENRHGDLLN-----KYLYLSGR 159
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|B Chain B, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|C Chain C, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|D Chain D, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|E Chain E, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|F Chain F, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
Length = 345
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 169 IRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAK 212
+R G S TS I +A AEE HGD L YL LS +
Sbjct: 103 VRDETGASPTSWAIWTRAWTAEENRHGDLLN-----KYLYLSGR 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,421,921
Number of Sequences: 62578
Number of extensions: 270225
Number of successful extensions: 693
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 14
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)