Query 024244
Match_columns 270
No_of_seqs 273 out of 1155
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 04:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.6 1.2E-14 4.2E-19 132.7 10.6 121 126-266 11-135 (280)
2 3bcv_A Putative glycosyltransf 84.2 15 0.0005 30.1 11.7 76 166-250 34-109 (240)
3 1xhb_A Polypeptide N-acetylgal 74.3 43 0.0015 30.9 12.7 78 167-251 62-140 (472)
4 2d7i_A Polypeptide N-acetylgal 70.1 35 0.0012 32.9 11.3 84 168-258 146-229 (570)
5 4fix_A UDP-galactofuranosyl tr 60.6 67 0.0023 31.9 11.5 48 215-262 258-307 (657)
6 2z86_A Chondroitin synthase; G 58.2 1.2E+02 0.004 29.1 12.4 76 166-250 404-479 (625)
7 1qg8_A Protein (spore coat pol 56.8 80 0.0027 25.8 13.6 89 166-260 30-125 (255)
8 2ffu_A Ppgalnact-2, polypeptid 53.3 95 0.0033 28.9 10.7 74 167-251 99-172 (501)
9 2z86_A Chondroitin synthase; G 37.1 2.8E+02 0.0095 26.3 12.2 35 217-251 166-200 (625)
10 2lnd_A De novo designed protei 33.6 44 0.0015 25.2 3.8 73 134-221 31-103 (112)
11 4dzn_A Coiled-coil peptide CC- 33.5 35 0.0012 20.6 2.6 27 76-102 4-30 (33)
12 4hg6_A Cellulose synthase subu 31.3 2.3E+02 0.0079 28.5 10.1 39 211-250 225-263 (802)
13 2z5i_A TM, general control pro 31.0 22 0.00076 24.0 1.7 22 81-102 12-33 (52)
14 1vf5_H Protein PET N; photosyn 29.1 35 0.0012 20.6 2.1 23 16-38 4-26 (29)
15 2pnv_A Small conductance calci 25.5 56 0.0019 21.3 2.8 30 70-102 8-37 (43)
16 1q90_N Cytochrome B6F complex 24.4 35 0.0012 20.8 1.6 23 16-38 6-28 (31)
17 2akf_A Coronin-1A; coiled coil 23.6 83 0.0028 19.0 3.1 24 75-98 7-30 (32)
18 1fo8_A Alpha-1,3-mannosyl-glyc 23.0 46 0.0016 30.6 2.8 44 215-258 89-135 (343)
19 1omz_A Alpha-1,4-N-acetylhexos 20.1 99 0.0034 28.0 4.4 38 224-261 105-142 (293)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.55 E-value=1.2e-14 Score=132.68 Aligned_cols=121 Identities=21% Similarity=0.296 Sum_probs=85.7
Q ss_pred CCeeEEEEEECCCCC-HHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeecc-
Q 024244 126 RKYFMVIGINTAFSS-RKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI- 203 (270)
Q Consensus 126 ~~~~lvI~I~Sap~~-~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~- 203 (270)
..-.++|+|+|++.+ .+|+.+||+||++... . ..||.+... ++ .+... ..++++..++.
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~--------~---~~fifsd~~--d~----~l~~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIR--------Q---QTFIFTDSP--DE----RLQER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSG--------G---GEEEEESSC--CH----HHHHH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCC--------C---ceEEEcCCC--cc----ccccc--ccccceeccccc
Confidence 346788999999985 4688999999998642 1 123333322 12 22222 35678887764
Q ss_pred -ccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEEee-cccc
Q 024244 204 -EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK-SGPV 266 (270)
Q Consensus 204 -DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~-sgPV 266 (270)
+++.+++.|+...|.+.. .++++||+|+|||+|||+++|+.+|..+++.+++|+|+.. .+|+
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~ 135 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPI 135 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC----
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccc
Confidence 467889999999988754 2699999999999999999999999999999999999876 5554
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=84.21 E-value=15 Score=30.08 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=46.4
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHH
Q 024244 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (270)
Q Consensus 166 ~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (270)
.+.++.|-..+. +.....+++-.+++..+..+. .+ |.. .-.+...+......+|++.+|+|.++..+.|..
T Consensus 34 ~~eiIvvDd~S~---d~t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP---DNCPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS---SSHHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC---cCHHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 456666654443 233444555555676776664 22 221 122334444445789999999999999888877
Q ss_pred HHhcc
Q 024244 246 TLAAH 250 (270)
Q Consensus 246 ~L~~~ 250 (270)
.+...
T Consensus 105 l~~~~ 109 (240)
T 3bcv_A 105 MYNVA 109 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=74.27 E-value=43 Score=30.90 Aligned_cols=78 Identities=13% Similarity=0.013 Sum_probs=46.9
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhcC-CEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHH
Q 024244 167 IIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (270)
Q Consensus 167 i~v~FViG~s~~~~~~ld~~I~~E~~~y~-DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (270)
..++.|-..+. ++.....+++-.+.+. .+..+...+.. .+ -.+...+......+|++..|+|+.+..+-|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~-G~----~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRS-GL----IRARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCC-CH----HHHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCC-Ch----HHHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 34555543332 2234455555556666 56666554433 22 22333444445789999999999999988888
Q ss_pred HHhccC
Q 024244 246 TLAAHR 251 (270)
Q Consensus 246 ~L~~~~ 251 (270)
++....
T Consensus 135 ll~~~~ 140 (472)
T 1xhb_A 135 LLARIK 140 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=70.08 E-value=35 Score=32.94 Aligned_cols=84 Identities=15% Similarity=0.052 Sum_probs=48.7
Q ss_pred EEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHH
Q 024244 168 IIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTL 247 (270)
Q Consensus 168 ~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L 247 (270)
.|+.|-..|. ++.+...+++..+.+..|-.+...+.. .+..- ...+......+|++..|+|+.++.+-|..++
T Consensus 146 EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~~A----~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 146 EIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLIRT----RMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHHHH----HHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred EEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHHHH----HHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 4555544443 334355566666667666666554332 22222 3333333467999999999999988777776
Q ss_pred hccCCCCceEE
Q 024244 248 AAHRTKPRVYV 258 (270)
Q Consensus 248 ~~~~~~~~lY~ 258 (270)
......+.+.+
T Consensus 219 ~~l~~~~~~vv 229 (570)
T 2d7i_A 219 DRIARNRKTIV 229 (570)
T ss_dssp HHHHHCTTEEE
T ss_pred HHHHhCCCEEE
Confidence 65433333333
No 5
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=60.61 E-value=67 Score=31.90 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC--CCCceEEEEee
Q 024244 215 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMK 262 (270)
Q Consensus 215 ~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~--~~~~lY~G~~~ 262 (270)
.+++.|....+++|++..|||+.+..+.|..++.... +..-+..|.+.
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il 307 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQML 307 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEe
Confidence 3566665544789999999999999988888776543 33334444444
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=58.19 E-value=1.2e+02 Score=29.05 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=45.4
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHH
Q 024244 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (270)
Q Consensus 166 ~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (270)
.+.++.|-..+. + .....+.+-.+.+..+..+. .+ |.. .-.++..+......+|++..|+|.++..+.|..
T Consensus 404 ~~eiivvdd~S~--d-~t~~~~~~~~~~~~~i~~~~-~~---n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~ 474 (625)
T 2z86_A 404 DLEVCICDDGST--D-DTLRILQEHYANHPRVRFIS-QK---NKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVEL 474 (625)
T ss_dssp SEEEEEEEESCS--S-SHHHHHHHHHTTCTTEEEEE-EC---CCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHH
T ss_pred CeEEEEEECcCC--h-hHHHHHHHHHhhCCcEEEEe-CC---CCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHHH
Confidence 456666655543 2 23334444445566665554 22 221 122344455555789999999999999988887
Q ss_pred HHhcc
Q 024244 246 TLAAH 250 (270)
Q Consensus 246 ~L~~~ 250 (270)
.+...
T Consensus 475 ~~~~~ 479 (625)
T 2z86_A 475 CLDEF 479 (625)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=56.80 E-value=80 Score=25.79 Aligned_cols=89 Identities=9% Similarity=-0.078 Sum_probs=49.2
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccC-----ccccHHHHHHHHHHHhCCCccEEEEeCCceEEeH
Q 024244 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY-----LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNL 240 (270)
Q Consensus 166 ~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY-----~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl 240 (270)
.+.+++|-..+. +.. ..+.++...+..|..+.....- .|.. .-..+..+.+..+.+|++.+|||.++..
T Consensus 30 ~~eiivvDd~S~---d~t-~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~~~ 103 (255)
T 1qg8_A 30 DFELFIMDDNSN---EET-LNVIRPFLNDNRVRFYQSDISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp CEEEEEEECSCC---HHH-HHHHGGGGGSTTEEEEECCCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred ceEEEEEECCCC---chH-HHHHHHHhhcCCEEEEecccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCccCh
Confidence 456666654443 222 2343444334556554433100 2221 2334555555568899999999999998
Q ss_pred HHHHHHHhccC--CCCceEEEE
Q 024244 241 ATLGMTLAAHR--TKPRVYVGC 260 (270)
Q Consensus 241 ~~L~~~L~~~~--~~~~lY~G~ 260 (270)
+.|...+.... +...+..|.
T Consensus 104 ~~l~~~~~~~~~~~~~~~v~~~ 125 (255)
T 1qg8_A 104 DRLLKMVRELDTHPEKAVIYSA 125 (255)
T ss_dssp THHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHhCCCceEEEec
Confidence 88877776543 333444443
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=53.29 E-value=95 Score=28.94 Aligned_cols=74 Identities=15% Similarity=-0.110 Sum_probs=44.1
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHH
Q 024244 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 246 (270)
Q Consensus 167 i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 246 (270)
+.+++|-..|. ++.+ ....+.+..+-.+...+.. .+ -.+...+......+|++..|+|+.+..+-|..+
T Consensus 99 ~EIIvVDDgS~--D~t~----~~~~~~~~~v~vi~~~~n~-G~----~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSN--DPED----GALLGKIEKVRVLRNDRRE-GL----MRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCS--CTHH----HHGGGGBTTEEEEECSSCC-HH----HHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCC--chHH----HHHHhcCCCEEEEECCCCc-CH----HHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 35666654443 2222 2233456666666554332 11 223344444457899999999999998888887
Q ss_pred HhccC
Q 024244 247 LAAHR 251 (270)
Q Consensus 247 L~~~~ 251 (270)
+....
T Consensus 168 l~~~~ 172 (501)
T 2ffu_A 168 LERVA 172 (501)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=37.10 E-value=2.8e+02 Score=26.33 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=26.8
Q ss_pred HHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC
Q 024244 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
+..+......+|++..|+|..+..+.|...+....
T Consensus 166 ~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~ 200 (625)
T 2z86_A 166 RNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLA 200 (625)
T ss_dssp HHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHH
T ss_pred HHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHh
Confidence 34444445789999999999999888887777653
No 10
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.59 E-value=44 Score=25.16 Aligned_cols=73 Identities=25% Similarity=0.228 Sum_probs=45.9
Q ss_pred EECCCCCHHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHH
Q 024244 134 INTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKT 213 (270)
Q Consensus 134 I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Kt 213 (270)
|.|+.++.+-|+.|...=- +..-.++||-|.+.+ . -...+.|+++-|=-.-.=-.-..++|+..+
T Consensus 31 irtatssqdirdiiksmkd-----------ngkplvvfvngasqn---d-vnefqneakkegvsydvlkstdpeeltqrv 95 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMKD-----------NGKPLVVFVNGASQN---D-VNEFQNEAKKEGVSYDVLKSTDPEELTQRV 95 (112)
T ss_dssp EEEECSHHHHHHHHHHHTT-----------CCSCEEEEECSCCHH---H-HHHHHHHHHHHTCEEEEEECCCHHHHHHHH
T ss_pred eeeccchhhHHHHHHHHHh-----------cCCeEEEEecCcccc---c-HHHHHHHHHhcCcchhhhccCCHHHHHHHH
Confidence 6677778888888865322 223458999998864 2 234667777766221111122345789999
Q ss_pred HHHHHHHH
Q 024244 214 KTYFATAV 221 (270)
Q Consensus 214 l~~f~wa~ 221 (270)
..+++.|-
T Consensus 96 reflktag 103 (112)
T 2lnd_A 96 REFLKTAG 103 (112)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 99998874
No 11
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=33.49 E-value=35 Score=20.60 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 024244 76 LAMVEQAIQSQDKRLDGLKTKITAVRA 102 (270)
Q Consensus 76 v~~~~~~~~~~~k~i~~lemela~~~~ 102 (270)
+.--.+-|-.|.|.|..|.-|+|+-++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333345677889999999999998765
No 12
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=31.33 E-value=2.3e+02 Score=28.53 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhcc
Q 024244 211 AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (270)
Q Consensus 211 ~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (270)
.|.- .+..+.+..+.+|++.+|+|+.+..+.|...+...
T Consensus 225 GKa~-alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~ 263 (802)
T 4hg6_A 225 AKAG-NMSAALERLKGELVVVFDADHVPSRDFLARTVGYF 263 (802)
T ss_dssp HHHH-HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHH
T ss_pred cchH-HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHH
Confidence 4443 35555555688999999999999999888887765
No 13
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=30.98 E-value=22 Score=24.03 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh
Q 024244 81 QAIQSQDKRLDGLKTKITAVRA 102 (270)
Q Consensus 81 ~~~~~~~k~i~~lemela~~~~ 102 (270)
..++.|+|+|+.||.+|...+.
T Consensus 12 RsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3677899999999999988764
No 14
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=29.12 E-value=35 Score=20.56 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.9
Q ss_pred cchhHHHHHHHHHHHhHhhhccc
Q 024244 16 IPRKWALFLCACSFCAGMSFTNR 38 (270)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~r 38 (270)
++--|+.++.+|+|-..+.|=||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 56679999999999999988776
No 15
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.52 E-value=56 Score=21.34 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 024244 70 NNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRA 102 (270)
Q Consensus 70 ~~~~~~v~~~~~~~~~~~k~i~~lemela~~~~ 102 (270)
.|++.++...|+ +|+++|..||..|.+-..
T Consensus 8 ydlvsel~~r~e---~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 8 YDMISDLNERSE---DFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence 355555554444 578999999988876544
No 16
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=24.43 E-value=35 Score=20.84 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.9
Q ss_pred cchhHHHHHHHHHHHhHhhhccc
Q 024244 16 IPRKWALFLCACSFCAGMSFTNR 38 (270)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~r 38 (270)
++--|+.++.+|+|-+.+.|=||
T Consensus 6 vsl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 6 VQIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHhheeeEEEEEec
Confidence 45679999999999999988777
No 17
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.57 E-value=83 Score=18.99 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhh
Q 024244 75 KLAMVEQAIQSQDKRLDGLKTKIT 98 (270)
Q Consensus 75 ~v~~~~~~~~~~~k~i~~lemela 98 (270)
+|.+-.-.+|+|+++++-||.-..
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444434478999999999987654
No 18
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=22.96 E-value=46 Score=30.56 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCccEEEEeCCceEEeHHHH---HHHHhccCCCCceEE
Q 024244 215 TYFATAVSMWDAEFYIKVDDDVHVNLATL---GMTLAAHRTKPRVYV 258 (270)
Q Consensus 215 ~~f~wa~~~~~a~F~lKvDDDvfVnl~~L---~~~L~~~~~~~~lY~ 258 (270)
.++.++.+..++++++-+|||+.+.++=+ .+.|..+...++++.
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~ 135 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWC 135 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEE
Confidence 45555555457999999999999998755 333333334556653
No 19
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=20.10 E-value=99 Score=27.96 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=28.9
Q ss_pred CCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEEe
Q 024244 224 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCM 261 (270)
Q Consensus 224 ~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~ 261 (270)
...+-|+-+|||+.++.+.|.-.+.-.+..|.-.+|+.
T Consensus 105 i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~ 142 (293)
T 1omz_A 105 VETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFV 142 (293)
T ss_dssp CCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESC
T ss_pred CCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCc
Confidence 46788999999999999999877776654444455654
Done!