Query 024244
Match_columns 270
No_of_seqs 273 out of 1155
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 04:52:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024244.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024244hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omza_ c.68.1.15 (A:) Alpha-1 69.6 5.1 0.00037 29.8 6.4 36 219-254 75-110 (265)
2 d1q90n_ f.23.27.1 (N:) PetN su 50.0 4.1 0.0003 23.2 1.8 22 17-38 7-28 (31)
3 d1xhba2 c.68.1.17 (A:95-422) P 45.3 69 0.005 25.5 11.6 65 181-250 67-132 (328)
4 d1qg8a_ c.68.1.1 (A:) Spore co 26.3 45 0.0033 25.4 5.3 33 217-249 80-112 (255)
5 d1fo8a_ c.68.1.10 (A:) N-acety 16.1 63 0.0046 27.7 4.3 43 216-258 90-135 (343)
6 d1s4na_ c.68.1.16 (A:) Glycoli 15.0 31 0.0023 29.8 1.9 28 224-251 135-165 (339)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 11.7 74 0.0054 17.0 2.2 20 19-38 5-24 (27)
8 d1owxa_ d.58.7.1 (A:) Lupus LA 11.6 1.3E+02 0.0094 20.5 4.3 40 162-204 6-45 (113)
9 d1jb0j_ f.23.18.1 (J:) Subunit 11.0 89 0.0065 18.6 2.6 28 16-43 8-36 (41)
10 d1wfxa_ d.166.1.5 (A:) Probabl 8.8 66 0.0048 24.9 1.8 34 215-248 5-38 (180)
No 1
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=69.55 E-value=5.1 Score=29.83 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=28.8
Q ss_pred HHHhCCCccEEEEeCCceEEeHHHHHHHHhccCCCC
Q 024244 219 TAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP 254 (270)
Q Consensus 219 wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~ 254 (270)
.+....+.+|++.+|||..+..+.|...++.....+
T Consensus 75 ~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~ 110 (265)
T d1omza_ 75 QVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFP 110 (265)
T ss_dssp SCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTST
T ss_pred hhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCC
Confidence 444556889999999999999999988888765444
No 2
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=49.96 E-value=4.1 Score=23.18 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHhHhhhccc
Q 024244 17 PRKWALFLCACSFCAGMSFTNR 38 (270)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~r 38 (270)
.--|..++++|||-+.+.+-||
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Confidence 3468999999999999998877
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.28 E-value=69 Score=25.48 Aligned_cols=65 Identities=11% Similarity=-0.003 Sum_probs=39.3
Q ss_pred CchHHHHHHHHhhcCCEE-EeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhcc
Q 024244 181 GILDKAIDAEEKMHGDFL-RLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (270)
Q Consensus 181 ~~ld~~I~~E~~~y~DIL-~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (270)
+.....+++-.+.+.+-+ ++...++. ..+ .+...+......+|++.+|+|+.+..+.|...+...
T Consensus 67 ~~~~~~l~~~~~~~~~~i~vi~~~~n~-G~~----~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~~ 132 (328)
T d1xhba2 67 DFLKRPLESYVKKLKVPVHVIRMEQRS-GLI----RARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARI 132 (328)
T ss_dssp GGGTHHHHHHHHSSSSCEEEEECSSCC-CHH----HHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCCeEEEEecccc-cch----HHHHHHHHhhhcceeeecCcccccChhHHHHHHHHH
Confidence 444444555455665533 33333322 222 234555555688999999999999998877766543
No 4
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=26.33 E-value=45 Score=25.42 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=24.3
Q ss_pred HHHHHhCCCccEEEEeCCceEEeHHHHHHHHhc
Q 024244 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAA 249 (270)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (270)
+..+....+.+|++.+|+|.++..+.|...+..
T Consensus 80 ~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~ 112 (255)
T d1qg8a_ 80 INQAIEMAEGEYITYATDDNIYMPDRLLKMVRE 112 (255)
T ss_dssp HHHHHHHCCCSEEEEEETTEEECTTHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHH
Confidence 445555568899999999999997766655443
No 5
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=16.10 E-value=63 Score=27.68 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=27.5
Q ss_pred HHHHHHhCCCccEEEEeCCceEEeHHHH---HHHHhccCCCCceEE
Q 024244 216 YFATAVSMWDAEFYIKVDDDVHVNLATL---GMTLAAHRTKPRVYV 258 (270)
Q Consensus 216 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L---~~~L~~~~~~~~lY~ 258 (270)
++.|+.+..+++.++-+.||..+.++=+ ...|..+...++++.
T Consensus 90 AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~ 135 (343)
T d1fo8a_ 90 ALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWC 135 (343)
T ss_dssp HHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHHHHhcCCCEEE
Confidence 3444444456899999999999998765 333333334555554
No 6
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.00 E-value=31 Score=29.77 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=20.9
Q ss_pred CCccEEEEeCCceEEeH---HHHHHHHhccC
Q 024244 224 WDAEFYIKVDDDVHVNL---ATLGMTLAAHR 251 (270)
Q Consensus 224 ~~a~F~lKvDDDvfVnl---~~L~~~L~~~~ 251 (270)
.+++||+++|||+++.= ..+..+++.++
T Consensus 135 ~~YdYywRvdpD~~f~cdI~yD~F~~M~~n~ 165 (339)
T d1s4na_ 135 EEYDWYWRVEPDIKLYCDINYDVFKWMQENE 165 (339)
T ss_dssp TTCSEEEECCTTCEECSCCCSCHHHHHHHTT
T ss_pred hccceEEEeCCCcEEecCCCCCHHHHHhhcC
Confidence 58999999999998753 24556777653
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.70 E-value=74 Score=17.03 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhHhhhccc
Q 024244 19 KWALFLCACSFCAGMSFTNR 38 (270)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~r 38 (270)
-|+.+|.+|..-..|.+-||
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 48889999998888888776
No 8
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.60 E-value=1.3e+02 Score=20.55 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=30.1
Q ss_pred hcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccc
Q 024244 162 EEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIE 204 (270)
Q Consensus 162 e~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~D 204 (270)
+...|..++||=+.+. ......|.+--.+||+|..+++..
T Consensus 6 ~~~~g~~~~fvgnL~~---~~tee~Lk~~F~~fG~V~~v~i~~ 45 (113)
T d1owxa_ 6 EEKIGCLLKFSGDLDD---QTCREDLHILFSNHGEIKWIDFVR 45 (113)
T ss_dssp SCCCCCEEEEEESCCS---SCCHHHHHHHTCSSCCEEEEECCT
T ss_pred CCCCCCeEEEECCCCC---CCCHHHHHHHHHhcCChheEEEec
Confidence 4457777788766654 345667889999999999999763
No 9
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=11.02 E-value=89 Score=18.63 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=21.2
Q ss_pred cchhHHHHHHHHHHHhHhhh-cccCCCCC
Q 024244 16 IPRKWALFLCACSFCAGMSF-TNRMWMMP 43 (270)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~r~w~~~ 43 (270)
+|.-.|+...-++|.||+++ .||+..|+
T Consensus 8 lstAPVla~~w~~~tAG~lIEiNRFfPD~ 36 (41)
T d1jb0j_ 8 LSTAPVLAAIWMTITAGILIEFNRFYPDL 36 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 45667888888899999986 57776654
No 10
>d1wfxa_ d.166.1.5 (A:) Probable RNA 2'-phosphotransferase KptA {Aeropyrum pernix [TaxId: 56636]}
Probab=8.83 E-value=66 Score=24.92 Aligned_cols=34 Identities=6% Similarity=0.094 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHh
Q 024244 215 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLA 248 (270)
Q Consensus 215 ~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~ 248 (270)
-++.|+..+-..+|=+..|.|=||+++.|+..+.
T Consensus 5 K~LS~~LRH~p~~~gL~~d~~G~v~v~dLl~~~~ 38 (180)
T d1wfxa_ 5 KTLAGILRHHPGRYGVRLTREGWARVSEVVEGLR 38 (180)
T ss_dssp HHHHHHHHTCTGGGTCCCCTTCCEEHHHHHHHHH
T ss_pred HHHHHHHCCCHhHCCCCcCCCCCEEHHHHHHHHH
Confidence 3577888887778888999999999999988765
Done!