BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024245
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54HW5|GNB1L_DICDI Guanine nucleotide-binding protein subunit beta-like protein 1
homolog OS=Dictyostelium discoideum GN=gnb1l PE=4 SV=1
Length = 359
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 117/277 (42%), Gaps = 61/277 (22%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHS--AAHG 64
PDP +LRGH+ +V V F + P +L++G+ GEL++W+ + + +S+ HS G
Sbjct: 13 PDPYYILRGHKFNVNSVLFDKVNPNLLYSGSGDGELKLWNIEEKKCISTQIAHSEGIGGG 72
Query: 65 IVSV-----------ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF 113
++S+ ++SQGRDG +K W I + N + ++TNS
Sbjct: 73 VLSLQWLSNDNNNENNNNNDEICGNILSQGRDGVIKIWSIIDNCTFKN-TYRLETNS--- 128
Query: 114 CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173
LSL K C S S+
Sbjct: 129 --LSLGK-----------------------------CSSLSSNLLSISGSAIDPTSSTSQ 157
Query: 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-------PSKSQGFVNVLA 226
VEIWDL + +L N+ G+ M+++ Y ++S + +
Sbjct: 158 VEIWDLKNKQVINKLKPNNQQLFEKL-----GLPMSLKLYYENENNDNSNQSNDQIRLCT 212
Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN 263
GYE+G +L+WD+RN IPL + K+H EP L ++ N
Sbjct: 213 GYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNN 249
>sp|Q9EQ15|GNB1L_MOUSE Guanine nucleotide-binding protein subunit beta-like protein 1
OS=Mus musculus GN=Gnb1l PE=2 SV=2
Length = 326
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 39/264 (14%)
Query: 5 PPPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
PPPP P VLRG +++V + F P+LF+G+ G + IW ++Q R + ++
Sbjct: 6 PPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIW-SLQTRRIVTTLNG 64
Query: 60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
G++ + T P ++++SQGRD + WD+E G + S ++ +S FC+ S++
Sbjct: 65 HGGQGVIWLKTLPQG--HQLLSQGRDLRLCLWDLEEGRNTIMDS--VQLDSVGFCRGSIL 120
Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE--------------GPKYMA 165
A K E ++ E S+C K + A + +
Sbjct: 121 VRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADARPGMPMCLGLWQTNSSLRPLL 180
Query: 166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223
+AG + V +WD++ + C+++ H+ G S K +G+ S S G V
Sbjct: 181 LAGYEDGSVTLWDISERKVCSQITCHEEPVMGLDFDSQKAKGI---------SGSAGKVL 231
Query: 224 VLAGYEDGSIL----VWDIRNPGI 243
+ +D L ++ NPGI
Sbjct: 232 AVWSLDDQQSLQVKKTHELTNPGI 255
>sp|A7UWE6|ASA1_NEUCR ASTRA-associated protein 1 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=asa-1 PE=3 SV=1
Length = 485
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 58/277 (20%)
Query: 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
PP P ++LRGH+A V F + L G G + WD R + H A I+
Sbjct: 7 PPTPKSILRGHKAQVHAATFIRNNERLVTGDADGFVIAWDLTIMRPRAVWQAHDNA--IL 64
Query: 67 SVATGPSIGLNKVISQGRDGTVKCWDI---ENGGLSSNPSL--------------TIKTN 109
+A G +++I+ GRD + W + + +S+ L ++ N
Sbjct: 65 GIA---GWGNDRIITHGRDNKLIVWKLIGDDEARMSTTLPLDPCAEPRPKPWILHLLEVN 121
Query: 110 SYHFCKLSL--VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167
+ +FC S V P +Q + +D + E+ +AV
Sbjct: 122 TMNFCSFSYCPVSAPVLPGQQEGQSQDTAQESRFES-----------------ELLIAVP 164
Query: 168 GEQLSE-VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
SE ++I+ L + TR H G GM MAV + + S + ++A
Sbjct: 165 NTLASEAIDIFHLPSQ---TRRHTVKLGDK-------NGMVMAVALFNQADS---LTLVA 211
Query: 227 GYEDGSILVWD---IRNPGIPLTAMKVHLEPGLECSM 260
GYE+G +V ++N +PL H +P L S+
Sbjct: 212 GYENGLAIVAHRDPVKNDWVPLYQATCHSQPILSLSV 248
>sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein subunit beta-like protein 1
OS=Homo sapiens GN=GNB1L PE=1 SV=2
Length = 327
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 100/261 (38%), Gaps = 74/261 (28%)
Query: 11 VAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSS---------S 56
VLRG ++ V + F Q +P+LF+G+ G + IW R V++ +
Sbjct: 13 QFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQCVT 72
Query: 57 WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116
W+ + G +++SQGRD + WD+ G + S+ ++ S FC+
Sbjct: 73 WLQTLPQG------------RQLLSQGRDLKLCLWDLAEGRSAVVDSVCLE--SVGFCRS 118
Query: 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176
S++ A + E ++ E S+C K PK A G +
Sbjct: 119 SILAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALK-------PKADAKLGMPM----- 166
Query: 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236
C RL Q C P +LAGYEDGS+++W
Sbjct: 167 --------CLRLWQADCSSRP-------------------------LLLAGYEDGSVVLW 193
Query: 237 DIRNPGIPLTAMKVHLEPGLE 257
D+ + + + H EP ++
Sbjct: 194 DVSEQKV-CSRIACHEEPVMD 213
>sp|P41318|LST8_YEAST Target of rapamycin complex subunit LST8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LST8 PE=1
SV=1
Length = 303
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
R P+PVA GHR +VT V F Q + + G +++WD V+ ++ ++ H+A
Sbjct: 61 RTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWD-VRSPSIPRNYKHNAP- 118
Query: 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDI 93
+ V P+ G ++IS RDG ++ WD+
Sbjct: 119 -VNEVVIHPNQG--ELISCDRDGNIRIWDL 145
>sp|A4RJA0|ASA1_MAGO7 ASTRA-associated protein 1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=asa1 PE=3 SV=1
Length = 469
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 40/234 (17%)
Query: 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
P P ++LRGH+A V F + L G G + +WD R + W AH V
Sbjct: 12 PAHPRSILRGHKAQVHAAAFVRNNERLVTGDADGFVVVWDLTIMRP-RAVW---RAHDDV 67
Query: 67 SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA 126
+ G G +++I+ GRD + W + S +L +P A
Sbjct: 68 LLGIG-GWGTDRLITHGRDNKLIVWQLREADEDS-------------LAKTLPVDPAAED 113
Query: 127 KQANEPKDCYEREVGE-TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE--VEIWDLNTAE 183
+ +P Y E+ T SLC+ D +E + + LS ++I+ L + +
Sbjct: 114 RP--KPWLLYMLEISTMNFCTFSLCEMSSDPLSEDREALIAVPNTLSSEAIDIFHLPSQK 171
Query: 184 R--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235
R RL Q+ GM MA++ + + G+ V GYE+G LV
Sbjct: 172 REHTIRLGQSE------------GMVMALELF---RVDGYFTVAVGYENGVALV 210
>sp|B8NG55|ASA1_ASPFN ASTRA-associated protein 1 OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=asa1 PE=3 SV=1
Length = 429
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 41/255 (16%)
Query: 6 PPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG 64
PP P +LRGH + + + FHQ L +G G + +WD V R V+ H A
Sbjct: 9 PPASPTYILRGHASPIHGLHIFHQNLR-LISGDADGWIIVWDLVFKRPVAVWKAHEGAIL 67
Query: 65 IVSVATGPSIGLNKVISQGRDGTVKCW----------------DI--ENGGLSSNPSL-- 104
V T + + +V + GRD + W DI +N ++ P L
Sbjct: 68 EVKGFTFSNQTVTEVYTHGRDHKLCVWRFRAQDEDLLQKTLPVDISEQNQSQATQPWLVH 127
Query: 105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164
++ N+ +FC S++ + EP E D S + P +
Sbjct: 128 SLPVNALNFCAFSMLFLDEEESPDTGEP---------EASDKTSTQSPGKNPPQHHSLFA 178
Query: 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224
++I+ L R + P + GM MAV + S + ++
Sbjct: 179 VPNALNSGAIDIFHLPRERRLCTI--------PADQTTQTGMVMAVTLFYSSTRELYIA- 229
Query: 225 LAGYEDGSILVWDIR 239
+ YEDG ++V+ +R
Sbjct: 230 -SAYEDGHVMVFALR 243
>sp|A2RA56|ASA1_ASPNC ASTRA-associated protein 1 OS=Aspergillus niger (strain CBS 513.88
/ FGSC A1513) GN=asa1 PE=3 SV=1
Length = 440
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 28/156 (17%)
Query: 4 RPPPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA 62
R PP P +LRGH A++ + FHQ L +G G + +WD V R ++W A
Sbjct: 9 RQPPATPTYILRGHAAAIHALQIFHQNLR-LVSGDADGWIVVWDLVSKRP-RATW--KAH 64
Query: 63 HGIVSVATGPSIG---LNKVISQGRDGTVKCW----------------DIE--NGGLSSN 101
G V G S G + +V + GRD ++ W DIE + +S
Sbjct: 65 DGTVLEVKGFSFGNGAVTEVFTHGRDHKLRVWRFSLQDEESLQKVLPVDIEKTSSTAASQ 124
Query: 102 PSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDC 135
P L ++ N+ +FC S+V P A A++ +
Sbjct: 125 PWLVHSLPVNALNFCAFSMVFLPPDKANTASDASEA 160
>sp|Q75BY3|PRP46_ASHGO Pre-mRNA-splicing factor PRP46 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PRP46
PE=3 SV=2
Length = 425
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH +V D+C P +F+ + ++ WD ++ V H G+ SV PS
Sbjct: 152 LQGHIMTVRDICISARHPYMFSASQDKLVKCWDLERNTVVRD--FHGTLSGVHSVDLHPS 209
Query: 74 IGLNKVISQGRDGTVKCWDIEN 95
+ L ++S GRD V+ WDI +
Sbjct: 210 LDL--IVSAGRDSVVRVWDIRS 229
>sp|Q8MYE8|PAAF1_DICDI Probable proteasomal ATPase-associated factor 1 OS=Dictyostelium
discoideum GN=paaf1 PE=3 SV=1
Length = 425
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 42/246 (17%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L GH V F + ++ +G++ L+IWD ++ S+ H G ++ A+
Sbjct: 141 LDGHVGDVDLAMFFPSGRVILSGSSDSRLKIWDAIEGTCASTLVGHI---GGITSASLVD 197
Query: 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEP 132
G N ++S RDGT K WDI + SN + + + F SL+ P +N+
Sbjct: 198 RGRN-LVSCSRDGTSKLWDIPTSSIISNLTKLSRPINDSFIASSLLDSIPTTTTTNSNDN 256
Query: 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV---AGEQLSEVEIWDLNTAERCTR-L 188
EREVG D +L + AE A+ + +S++ + + + E+ TR +
Sbjct: 257 NKVDEREVG--TDGKTLI-----IAAEEGFLQAIDLRSKNMISQMNV--VQSGEKSTRSV 307
Query: 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248
N+C N+ ++ G +GSI WD RN P +
Sbjct: 308 AFNACHVHKNY------------------------IIGGDHNGSIYFWDKRNLNSPFCRL 343
Query: 249 KVHLEP 254
+ P
Sbjct: 344 QFTNSP 349
>sp|B5X3C4|LIS1B_SALSA Lissencephaly-1 homolog B OS=Salmo salar GN=pafah1b1-2 PE=2 SV=1
Length = 410
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV D+ F QT +L + + +++WD + + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSVAIMPN 203
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ ++S RD T+K W++ G
Sbjct: 204 --GDHIVSASRDKTIKMWEVATG 224
>sp|Q803D2|LIS1B_DANRE Lissencephaly-1 homolog B OS=Danio rerio GN=pafah1b1b PE=2 SV=3
Length = 410
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV D+ F QT +L + + +++WD + + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSVAIMPN 203
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ ++S RD T+K W++ G
Sbjct: 204 --GDHIVSASRDKTMKMWEVATG 224
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 22/105 (20%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV-----------QHRTVSSSWVH 59
V GHR V V +Q +L + + +R+W +H SW
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLLASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 286
Query: 60 SAAHGIVSVATGPSIGLNK--------VISQGRDGTVKCWDIENG 96
+AH +S ATG NK ++S RD T+K WDI G
Sbjct: 287 ESAHPTISEATGSE---NKKSGKPGPFLLSGSRDKTIKMWDISTG 328
>sp|Q9PTR5|LIS1_CHICK Lissencephaly-1 homolog OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH SV D+ F T +L + + +++WD + + +H H + SV
Sbjct: 141 DFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P+ + ++S RD T+K W+++ G
Sbjct: 199 AIMPN--GDHIVSASRDKTIKMWEVQTG 224
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV-----------QHRTVSSSWVH 59
V GHR V V +Q ++ + + +R+W +H SW
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 286
Query: 60 SAAHGIVSVATGPSIGLNK-----VISQGRDGTVKCWDIENG 96
+++ +S ATG + ++S RD T+K WDI G
Sbjct: 287 ESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTG 328
>sp|Q9GL51|LIS1_PIG Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus
scrofa GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH SV D+ F + +L + + +++WD + + +H H + SV
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P+ + ++S RD T+K W+++ G
Sbjct: 199 AIMPN--GDHIVSAARDKTIKMWEVQTG 224
>sp|B5X3Z6|LIS1A_SALSA Lissencephaly-1 homolog A OS=Salmo salar GN=pafah1b1-1 PE=2 SV=1
Length = 410
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV D+ F T +L + + +++WD + + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSVAIMPN 203
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ ++S RD T+K W++ G
Sbjct: 204 --GDHIVSASRDKTIKMWEVATG 224
>sp|Q05B17|WDR48_XENTR WD repeat-containing protein 48 OS=Xenopus tropicalis GN=wdr48 PE=2
SV=1
Length = 678
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 95/256 (37%), Gaps = 55/256 (21%)
Query: 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAH------GIVSVATGPSIGLNKVISQGRDG 86
LF +RIW+ QH+ ++ S H IV G ++ IS D
Sbjct: 45 LFTAGRDSIIRIWNVNQHK--QDPYIASMEHHTDWVNDIVLCCNGKTL-----ISASSDT 97
Query: 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG----- 141
TVK W+ G S T++T+ + L+ K+ A A + + +V
Sbjct: 98 TVKVWNAHKGFCMS----TLRTHKDYVKALAYAKDKELVA-SAGLDRQIFLWDVNTLTAL 152
Query: 142 ----ETVDTDSLCDSKDDVPAEGPKYMA---VAGEQLSEVEIWDLNTAERCTRLH----- 189
TV T SL +KD + + M V+G + +WD T ++ +L
Sbjct: 153 TASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCQKLMKLKGHTDN 212
Query: 190 --------------QNSCGGSPNFSSKGRGMCMAVQ------AYLPSKSQGFVNVLAGYE 229
S G+ S G+ C+A + ++GF +V +G
Sbjct: 213 VKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNEGFTHVYSGGR 272
Query: 230 DGSILVWDIRNPGIPL 245
D I D+RNP I L
Sbjct: 273 DRKIYCTDLRNPDIRL 288
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH +V + ++ +G++ G +R+W Q R +++ VH G+ ++
Sbjct: 206 LKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHD--EGVWALQVNE- 262
Query: 74 IGLNKVISQGRDGTVKCWDIEN 95
G V S GRD + C D+ N
Sbjct: 263 -GFTHVYSGGRDRKIYCTDLRN 283
>sp|P63004|LIS1_RAT Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH SV D+ F + +L + + +++WD + + +H H + SV
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P+ + ++S RD T+K W+++ G
Sbjct: 199 AIMPN--GDHIVSASRDKTIKMWEVQTG 224
>sp|P63005|LIS1_MOUSE Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus
musculus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH SV D+ F + +L + + +++WD + + +H H + SV
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P+ + ++S RD T+K W+++ G
Sbjct: 199 AIMPN--GDHIVSASRDKTIKMWEVQTG 224
>sp|B0LSW3|LIS1_FELCA Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Felis catus GN=PAFAH1B1 PE=2 SV=1
Length = 410
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH SV D+ F + +L + + +++WD + + +H H + SV
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P+ + ++S RD T+K W+++ G
Sbjct: 199 AIMPN--GDHIVSASRDKTIKMWEVQTG 224
>sp|Q4RJN5|LIS1_TETNG Lissencephaly-1 homolog OS=Tetraodon nigroviridis GN=pafah1b1 PE=3
SV=1
Length = 410
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV D+ F T +L + + +++WD + + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDISFDLTGKLLASCSADMTIKLWDFQSFECIRT--MHGHDHNVSSVAIMPN 203
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ +IS RD T+K W++ G
Sbjct: 204 --GDHIISASRDKTMKMWEVATG 224
>sp|P43033|LIS1_BOVIN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos
taurus GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH SV D+ F + +L + + +++WD + + +H H + SV
Sbjct: 141 DFERTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P+ + ++S RD T+K W+++ G
Sbjct: 199 AIMPN--GDHIVSASRDKTIKMWEVQTG 224
>sp|Q5IS43|LIS1_PANTR Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan
troglodytes GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH SV D+ F + +L + + +++WD + + +H H + SV
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P+ + ++S RD T+K W+++ G
Sbjct: 199 AIMPN--GDHIVSASRDKTIKMWEVQTG 224
>sp|P43034|LIS1_HUMAN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo
sapiens GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH SV D+ F + +L + + +++WD + + +H H + SV
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P+ + ++S RD T+K W+++ G
Sbjct: 199 AIMPN--GDHIVSASRDKTIKMWEVQTG 224
>sp|Q6NZH4|LIS1_XENTR Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3
Length = 410
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV D+ F + +L + + +++WD + + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSVAIMPN 203
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ ++S RD T+K W+++ G
Sbjct: 204 --GDHIVSASRDKTIKMWEVQTG 224
>sp|Q7T394|LIS1A_DANRE Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3
Length = 410
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV D+ F T +L + + +++WD + + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSVAIMPN 203
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ ++S RD T+K W++ G
Sbjct: 204 --GDHIVSASRDKTIKMWEVATG 224
>sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus
GN=SNRNP40 PE=2 SV=1
Length = 358
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 31/237 (13%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH-SAAHGIVS 67
D A L+GH +V ++ ++ +LF+ +T + +WD+ V H S +
Sbjct: 101 DNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYP 160
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL--VKEPYAN 125
GP + V + DGTVK WDI ++ N+Y ++ + +
Sbjct: 161 ARRGPQL----VCTGSDDGTVKLWDIRK-----KAAIQTFQNTYQVLAVTFNDTSDQIIS 211
Query: 126 AKQANEPK--DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN--- 180
N+ K D + ++ T+ + + + +EG ++ A + + V +WD+
Sbjct: 212 GGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMD--NTVRVWDVRPFA 269
Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237
ERC R+ Q G NF K C ++ P S+ + AG D + VWD
Sbjct: 270 PKERCVRIFQ---GNVHNF-EKNLLRC----SWSPDGSK----IAAGSADRFVYVWD 314
>sp|Q5A7Q3|PRP46_CANAL Pre-mRNA-splicing factor PRP46 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PRP46 PE=3 SV=1
Length = 389
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV---HSAAHGIVSV 68
AVL GH + +C + P LF+G LR WD + + + + H G+ S+
Sbjct: 122 AVLTGHVLGIRSLCISKRHPYLFSGGEDKSLRCWDLERSNSDAGCQIRSYHGHLGGVYSI 181
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDI 93
P L+ + S G+D V+ WDI
Sbjct: 182 GLHPE--LDVLFSGGKDCVVRVWDI 204
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG 75
GH V + H +LF+G +R+WD ++ R V + + + I S+ T
Sbjct: 173 GHLGGVYSIGLHPELDVLFSGGKDCVVRVWD-IRSR-VEAMTLLGHTNDITSIET--DYN 228
Query: 76 LNKVISQGRDGTVKCWDIENGG---LSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANE 131
+VI+ DGT++ WD+ L +N S +I++ H + + V + KQ
Sbjct: 229 DPQVITSSMDGTIRLWDLRKSKTELLITNHSKSIRSMKSHPKEATFVSGDSNGEIKQWLL 288
Query: 132 PKDCYEREVG 141
PK E G
Sbjct: 289 PKGELLNEFG 298
>sp|Q8HXX0|LIS1_MACFA Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH SV D+ F + +L + + +++WD + + +H H + SV
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P+ + ++S RD T+K W+++ G
Sbjct: 199 AIMPN--GDHLVSASRDKTIKMWEVQTG 224
>sp|Q90ZL4|LIS1_XENLA Lissencephaly-1 homolog OS=Xenopus laevis GN=pafah1b1 PE=2 SV=3
Length = 410
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV D+ F + +L + + +++WD + + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECLRT--MHGHDHNVSSVAIMPN 203
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ ++S RD T+K W+++ G
Sbjct: 204 --GDHIVSASRDKTIKMWEVQTG 224
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora
curvata GN=pkwA PE=3 SV=1
Length = 742
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD--TVQHRTVSSSWVHSAAHGIVSVA 69
AVL+GH V V F ++ +G+ G +R+WD T + R V + + A +VS+A
Sbjct: 579 AVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDV----LQAPAENVVSLA 634
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENG 96
P ++ G D TV WD+ +G
Sbjct: 635 FSPD---GSMLVHGSDSTVHLWDVASG 658
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG----IVS 67
AV GH V D+ F ++ +G+ G R+W+ V++ H+ G + +
Sbjct: 537 AVFEGHTHYVLDIAFSPDGSMVASGSRDGTARLWN------VATGTEHAVLKGHTDYVYA 590
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENG 96
VA P + V S RDGT++ WD+ G
Sbjct: 591 VAFSPDGSM--VASGSRDGTIRLWDVATG 617
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D + L GH V V F +L +G+ +R+WD + H+ H ++ +
Sbjct: 492 DELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHT--HYVLDI 549
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P + V S RDGT + W++ G
Sbjct: 550 AFSPDGSM--VASGSRDGTARLWNVATG 575
>sp|Q54S79|WDR3_DICDI WD repeat-containing protein 3 homolog OS=Dictyostelium discoideum
GN=wdr3 PE=3 SV=1
Length = 942
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG 71
AV GHR SVT + F++ IL +G+ E+ +WD + + H V +
Sbjct: 95 AVFNGHRGSVTTMTFNRLGNILVSGSKDTEVIVWDIITESGLFRLRGHRDQITSVKLLER 154
Query: 72 PSIGLNKVISQGRDGTVKCWDIE 94
N +I+ +DG +K WD E
Sbjct: 155 S----NHLITSSKDGFIKIWDTE 173
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN 77
+A VT+VC + +L +G + G +RIW ++ + V + G V+ T +G N
Sbjct: 59 KAEVTNVCLSKDGALLASGYSDGSIRIWSMSDYQLQA---VFNGHRGSVTTMTFNRLG-N 114
Query: 78 KVISQGRDGTVKCWDI 93
++S +D V WDI
Sbjct: 115 ILVSGSKDTEVIVWDI 130
>sp|O62621|COPB2_DROME Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2
SV=2
Length = 914
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-------VSSSWVHSAAH 63
V L GH +++ VCFH PI+ G+ G +RIW + +R W S+
Sbjct: 222 VQTLEGHAQNISAVCFHPELPIVLTGSEDGTVRIWHSGTYRLETCLNYGFERVWTISSMR 281
Query: 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDI 93
G +VA G G + +I GR+ D+
Sbjct: 282 GTNNVALGYDEG-SIIIKVGREEPAMSMDV 310
>sp|Q5REG7|LIS1_PONAB Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH S+ D+ F + +L + + +++WD + + +H H + SV
Sbjct: 141 DFERTLKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P+ + ++S RD T+K W+++ G
Sbjct: 199 AIMPN--GDHIVSASRDKTIKMWEVQTG 224
>sp|B4MY65|LIS1_DROWI Lissencephaly-1 homolog OS=Drosophila willistoni GN=Lis-1 PE=3 SV=1
Length = 409
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV DV F +L + + +++WD Q + +H H + SVA P+
Sbjct: 144 LKGHTDSVQDVAFDAQGKLLVSCSADLSIKLWDFQQSYACVKT-MHGHDHNVSSVAFVPA 202
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ V+S RD T+K W++ G
Sbjct: 203 --GDYVLSASRDRTIKMWEVATG 223
>sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens
GN=SNRNP40 PE=1 SV=1
Length = 357
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 31/237 (13%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH-SAAHGIVS 67
D A L+GH +V ++ ++ +LF+ +T + +WD+ V H S +
Sbjct: 100 DNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYP 159
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL--VKEPYAN 125
GP + V + DGTVK WDI ++ N+Y ++ + +
Sbjct: 160 ARRGPQL----VCTGSDDGTVKLWDIRK-----KAAIQTFQNTYQVLAVTFNDTSDQIIS 210
Query: 126 AKQANEPK--DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN--- 180
N+ K D + ++ T+ + + + +EG ++ A + + V +WD+
Sbjct: 211 GGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMD--NTVRVWDVRPFA 268
Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237
ERC ++ Q G NF K C ++ P S+ + AG D + VWD
Sbjct: 269 PKERCVKIFQ---GNVHNF-EKNLLRC----SWSPDGSK----IAAGSADRFVYVWD 313
>sp|A3LXM4|ASA1_PICST ASTRA-associated protein 1 OS=Scheffersomyces stipitis (strain ATCC
58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=ASA1
PE=3 SV=2
Length = 432
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 8 PDPVAVLRGHRASVTDV--CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
P + LR H S++++ F K L + T G + IW+ R + H
Sbjct: 6 PQQIFSLRSHENSISNIEEVFLWNKHCLISSDTKGWIIIWNINAKRPIRKWQAHDE---- 61
Query: 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP--SLTIKTNSYHFCKLSLVKE 121
++ T I N +++ GRD ++K WDI S+P + N+ +FC + +
Sbjct: 62 -TILTLTLISTNTLLTHGRDASLKIWDISVEHAESSPPELFFLPINTLNFCNVQYFND 118
>sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3
SV=1
Length = 417
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV DV F + L + + ++++WD ++ + + H H + SVA PS
Sbjct: 160 LKGHTDSVQDVAFDPSGKFLASCSADMQVKLWDFTIYQCIKTLTGHD--HNVSSVAFLPS 217
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
++S RD T+K W++ G
Sbjct: 218 GDF--LVSASRDKTIKMWEVSTG 238
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
P P L GHR+ +T V FH + + + +++WD
Sbjct: 110 PRPPAKFTLTGHRSPITRVLFHPHYNVFVSASEDASIKVWD 150
>sp|B4JWA1|LIS1_DROGR Lissencephaly-1 homolog OS=Drosophila grimshawi GN=Lis-1 PE=3 SV=1
Length = 411
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV DV F +L + + +++WD Q + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDVAFDAQGKLLVSCSADLSIKLWDFQQSYECVKT-MHGHDHNVSSVAFVPA 204
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ V+S RD T+K W++ G
Sbjct: 205 --GDYVLSASRDRTIKMWEVATG 225
>sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus
GN=Snrnp40 PE=2 SV=1
Length = 358
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 31/237 (13%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH-SAAHGIVS 67
D A L+GH +V ++ ++ +LF+ +T + +WD+ V H S +
Sbjct: 101 DNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYP 160
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL--VKEPYAN 125
GP + V + DGTVK WDI ++ N+Y ++ + +
Sbjct: 161 ARRGPQL----VCTGSDDGTVKLWDIRK-----KAAVQTFQNTYQVLAVTFNDTSDQIIS 211
Query: 126 AKQANEPK--DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN--- 180
N+ K D + ++ T+ + + + +EG ++ A + + V +WD+
Sbjct: 212 GGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMD--NTVRVWDVRPFA 269
Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237
ERC ++ Q G NF K C ++ P S+ + AG D + VWD
Sbjct: 270 PKERCVKIFQ---GNVHNF-EKNLLRC----SWSPDGSK----IAAGSADRFVYVWD 314
>sp|A7S338|LIS1_NEMVE Lissencephaly-1 homolog OS=Nematostella vectensis GN=v1g242515 PE=3
SV=1
Length = 409
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH +V D+ F T L + + +++WD + + +H H + S++ PS
Sbjct: 144 LKGHTDAVQDLAFDHTGKFLASSSADMTIKLWDFQGFECIRT--LHGHDHNVSSISFLPS 201
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ ++S RD T+K W+I G
Sbjct: 202 --GDHLVSASRDKTIKMWEIATG 222
>sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae
GN=BRAFLDRAFT_59218 PE=3 SV=1
Length = 406
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
D L+GH +V DV F Q +L + + +++WD + + +H H + SV
Sbjct: 139 DFERTLKGHTDAVQDVSFDQQGKLLASCSADMTIKLWDFQTFENIKT--MHGHDHNVSSV 196
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
P+ +IS RD T+K W++ G
Sbjct: 197 HFMPNGDF--LISASRDKTIKMWELATG 222
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---HRTVSSSWVHSA 61
P PP + L GHR+ +T V FH ++ + + ++IWD RT+ H+
Sbjct: 94 PRPPARYS-LSGHRSPITRVLFHPVYSVMVSASEDATIKIWDYETGDFERTLKG---HTD 149
Query: 62 AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94
A VS + + S D T+K WD +
Sbjct: 150 AVQDVSFDQQGKL----LASCSADMTIKLWDFQ 178
>sp|B6HHJ8|ASA1_PENCW ASTRA-associated protein 1 OS=Penicillium chrysogenum (strain ATCC
28089 / DSM 1075 / Wisconsin 54-1255) GN=asa1 PE=3 SV=1
Length = 440
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 58/253 (22%)
Query: 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
P PV +LRGH + V + + L +G G + +WD V R V ++W A G V
Sbjct: 11 PATPVYILRGHASPVHALHIYSQNLRLVSGDANGWIVVWDLVTKRPV-TAW--KAHEGAV 67
Query: 67 SVATGPSI--GLNKVISQGRDGTVKCWDIE-------------------NGGLSSNPSL- 104
A G + G ++ + GRD + W + G + P L
Sbjct: 68 LEARGFDVGSGATEIYTHGRDHKLCVWKLRPEDETFLNKTLPVDATESAQPGSKTQPWLL 127
Query: 105 -TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163
++ N+ +FC S+ + N + + + G +T P
Sbjct: 128 HSLPVNALNFCAFSMA---FVNP----DGLPAFPSQSGRPENTLFAV----------PNA 170
Query: 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223
+ G V+I+ L + R + + P+ S GM MAV ++ G +
Sbjct: 171 LDSGG-----VDIFHLPSERRISTI--------PSEQSPKTGMLMAVNLFI--SPSGDLY 215
Query: 224 VLAGYEDGSILVW 236
V + YEDG ++V+
Sbjct: 216 VASAYEDGHVMVF 228
>sp|B3MEY6|LIS1_DROAN Lissencephaly-1 homolog OS=Drosophila ananassae GN=Lis-1 PE=3 SV=1
Length = 411
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV DV F +L + + +++WD Q + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQTYECVKT-MHGHDHNVSSVAFVPA 204
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ V+S RD TVK W++ G
Sbjct: 205 --GDYVLSASRDRTVKMWEVATG 225
>sp|Q291L9|LIS1_DROPS Lissencephaly-1 homolog OS=Drosophila pseudoobscura pseudoobscura
GN=Lis-1 PE=3 SV=1
Length = 411
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV DV F +L + + +++WD Q + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDVAFDSQGKLLASCSADLSIKLWDFQQSYECVKT-MHGHDHNVSSVAFVPA 204
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ V+S RD T+K W++ G
Sbjct: 205 --GDYVLSASRDRTIKMWEVATG 225
>sp|B4GAJ1|LIS1_DROPE Lissencephaly-1 homolog OS=Drosophila persimilis GN=Lis-1 PE=3 SV=1
Length = 411
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV DV F +L + + +++WD Q + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDVAFDSQGKLLASCSADLSIKLWDFQQSYECVKT-MHGHDHNVSSVAFVPA 204
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ V+S RD T+K W++ G
Sbjct: 205 --GDYVLSASRDRTIKMWEVATG 225
>sp|P38262|SIF2_YEAST SIR4-interacting protein SIF2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SIF2 PE=1 SV=2
Length = 535
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P L GH ++ + F+ T +L + + G LRIW + + + HS S+
Sbjct: 351 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-----SIV 405
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGL 98
+ +G +KVIS DG+V+ W ++ L
Sbjct: 406 SASWVGDDKVISCSMDGSVRLWSLKQNTL 434
>sp|B4KT48|LIS1_DROMO Lissencephaly-1 homolog OS=Drosophila mojavensis GN=Lis-1 PE=3 SV=1
Length = 411
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV DV F +L + + +++WD Q + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECVKT-MHGHDHNVSSVAFVPA 204
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ V+S RD T+K W++ G
Sbjct: 205 --GDYVLSASRDRTIKMWEVATG 225
>sp|B4LQ21|LIS1_DROVI Lissencephaly-1 homolog OS=Drosophila virilis GN=Lis-1 PE=3 SV=1
Length = 411
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV DV F +L + + +++WD Q + +H H + SVA P+
Sbjct: 146 LKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECVKT-MHGHDHNVSSVAFVPA 204
Query: 74 IGLNKVISQGRDGTVKCWDIENG 96
+ V+S RD T+K W++ G
Sbjct: 205 --GDYVLSASRDRTIKMWEVATG 225
>sp|C4YFX2|TUP1_CANAW Transcriptional repressor TUP1 OS=Candida albicans (strain WO-1)
GN=TUP1 PE=4 SV=1
Length = 511
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ +LRGH + + F L +G+ +RIWD RT S S G+ +VA
Sbjct: 289 IKILRGHEQDIYSLDFFPDGDRLVSGSGDRSVRIWDL---RTSQCSLTLSIEDGVTTVAV 345
Query: 71 GPSIGLNKVISQGR-DGTVKCWDIENGGL 98
P K+I+ G D TV+ WD G L
Sbjct: 346 SPD---GKLIAAGSLDRTVRVWDSTTGFL 371
>sp|P0CY34|TUP1_CANAL Transcriptional repressor TUP1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=TUP1 PE=1 SV=1
Length = 512
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ +LRGH + + F L +G+ +RIWD RT S S G+ +VA
Sbjct: 290 IKILRGHEQDIYSLDFFPDGDRLVSGSGDRSVRIWDL---RTSQCSLTLSIEDGVTTVAV 346
Query: 71 GPSIGLNKVISQGR-DGTVKCWDIENGGL 98
P K+I+ G D TV+ WD G L
Sbjct: 347 SPD---GKLIAAGSLDRTVRVWDSTTGFL 372
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,200,218
Number of Sequences: 539616
Number of extensions: 4649568
Number of successful extensions: 15216
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 544
Number of HSP's that attempted gapping in prelim test: 12670
Number of HSP's gapped (non-prelim): 2683
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)