Query 024245
Match_columns 270
No_of_seqs 461 out of 1078
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 03:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-40 5.2E-45 245.1 16.2 230 9-268 208-446 (459)
2 KOG0271 Notchless-like WD40 re 100.0 4.2E-38 9.2E-43 230.9 20.1 241 9-268 106-425 (480)
3 KOG0271 Notchless-like WD40 re 100.0 1.4E-37 3E-42 228.2 19.3 231 9-268 191-467 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-36 4.2E-41 224.4 18.2 224 15-267 172-403 (459)
5 KOG0286 G-protein beta subunit 100.0 1E-34 2.2E-39 206.1 23.6 234 10-268 47-289 (343)
6 KOG0279 G protein beta subunit 100.0 1.5E-34 3.3E-39 203.9 19.3 194 9-268 54-249 (315)
7 KOG0263 Transcription initiati 100.0 9.7E-35 2.1E-39 230.5 18.9 193 10-268 443-635 (707)
8 KOG0315 G-protein beta subunit 100.0 8.9E-33 1.9E-37 192.2 22.9 227 7-261 72-309 (311)
9 KOG0273 Beta-transducin family 100.0 2.3E-32 5.1E-37 205.5 20.0 223 18-268 235-468 (524)
10 KOG0279 G protein beta subunit 100.0 4.6E-32 9.9E-37 191.5 18.7 197 9-268 6-208 (315)
11 KOG0285 Pleiotropic regulator 100.0 1.2E-31 2.7E-36 195.6 19.8 232 7-268 140-376 (460)
12 KOG0265 U5 snRNP-specific prot 100.0 1.5E-31 3.2E-36 190.7 19.5 243 9-267 38-323 (338)
13 KOG0286 G-protein beta subunit 100.0 1.3E-30 2.8E-35 185.3 23.2 229 12-268 91-331 (343)
14 KOG0295 WD40 repeat-containing 100.0 1.6E-31 3.6E-36 195.0 17.1 230 8-267 140-391 (406)
15 KOG0315 G-protein beta subunit 100.0 4.6E-30 1E-34 178.8 22.1 232 8-268 30-274 (311)
16 KOG0316 Conserved WD40 repeat- 100.0 9.6E-31 2.1E-35 180.9 18.2 235 5-264 46-282 (307)
17 KOG0282 mRNA splicing factor [ 100.0 3.3E-32 7.3E-37 205.2 11.5 238 7-263 203-485 (503)
18 KOG0266 WD40 repeat-containing 100.0 2.8E-30 6.1E-35 207.9 23.0 235 9-268 194-438 (456)
19 KOG0318 WD40 repeat stress pro 100.0 5.5E-30 1.2E-34 195.4 22.8 248 6-268 178-503 (603)
20 KOG0291 WD40-repeat-containing 100.0 6.8E-30 1.5E-34 202.5 24.0 229 10-268 342-598 (893)
21 KOG0296 Angio-associated migra 100.0 8.8E-30 1.9E-34 186.1 22.6 238 10-267 56-383 (399)
22 KOG0295 WD40 repeat-containing 100.0 1.5E-30 3.2E-35 190.1 17.3 236 7-268 97-350 (406)
23 KOG0281 Beta-TrCP (transducin 100.0 1.5E-31 3.2E-36 194.7 11.7 231 9-270 228-467 (499)
24 KOG0293 WD40 repeat-containing 100.0 2.7E-30 5.8E-35 191.8 17.9 237 4-266 210-496 (519)
25 KOG0284 Polyadenylation factor 100.0 3.8E-31 8.2E-36 195.8 12.5 227 12-268 132-366 (464)
26 KOG1407 WD40 repeat protein [F 100.0 4.8E-29 1E-33 174.8 17.8 229 12-268 14-247 (313)
27 KOG0316 Conserved WD40 repeat- 100.0 4.8E-29 1E-33 172.5 17.5 191 7-267 6-198 (307)
28 KOG1446 Histone H3 (Lys4) meth 100.0 5.3E-28 1.2E-32 173.8 23.5 232 9-267 5-290 (311)
29 KOG0276 Vesicle coat complex C 100.0 3.9E-29 8.5E-34 194.5 18.0 232 10-266 5-241 (794)
30 KOG0263 Transcription initiati 100.0 1.5E-29 3.2E-34 201.2 16.0 167 9-240 484-650 (707)
31 KOG0273 Beta-transducin family 100.0 4.9E-28 1.1E-32 182.4 22.8 232 7-268 265-509 (524)
32 KOG0643 Translation initiation 100.0 4.5E-28 9.8E-33 170.5 20.3 229 13-268 5-303 (327)
33 KOG0284 Polyadenylation factor 100.0 6.8E-30 1.5E-34 189.2 11.4 215 18-262 96-316 (464)
34 cd00200 WD40 WD40 domain, foun 100.0 2.9E-27 6.3E-32 180.6 25.9 229 11-268 2-235 (289)
35 KOG0645 WD40 repeat protein [G 100.0 1.4E-27 3E-32 168.3 20.6 192 9-267 5-210 (312)
36 PTZ00421 coronin; Provisional 100.0 4.1E-27 8.9E-32 189.2 25.1 192 12-267 69-274 (493)
37 KOG0313 Microtubule binding pr 100.0 1.3E-27 2.7E-32 175.8 19.8 239 8-268 134-405 (423)
38 KOG0276 Vesicle coat complex C 100.0 2.8E-28 6E-33 189.8 17.1 195 8-265 87-282 (794)
39 KOG0292 Vesicle coat complex C 100.0 9.7E-28 2.1E-32 193.6 20.3 232 9-268 42-308 (1202)
40 KOG0266 WD40 repeat-containing 100.0 4.1E-27 8.8E-32 189.6 23.2 231 11-268 151-395 (456)
41 KOG0291 WD40-repeat-containing 100.0 5.2E-27 1.1E-31 186.3 22.9 232 9-268 298-536 (893)
42 KOG0288 WD40 repeat protein Ti 100.0 5.1E-28 1.1E-32 179.5 15.4 234 9-268 210-447 (459)
43 KOG0268 Sof1-like rRNA process 100.0 3E-28 6.4E-33 178.2 11.9 225 10-267 58-287 (433)
44 PTZ00420 coronin; Provisional 100.0 2.6E-26 5.6E-31 185.8 24.3 198 9-267 65-278 (568)
45 KOG0277 Peroxisomal targeting 100.0 9.9E-28 2.2E-32 167.7 13.4 211 4-238 90-308 (311)
46 KOG0319 WD40-repeat-containing 100.0 5.8E-27 1.3E-31 185.4 19.0 230 12-267 359-604 (775)
47 cd00200 WD40 WD40 domain, foun 100.0 1.4E-25 3.1E-30 171.3 25.8 230 9-267 42-276 (289)
48 KOG0299 U3 snoRNP-associated p 100.0 2.1E-26 4.5E-31 173.2 20.0 227 15-267 199-440 (479)
49 KOG0281 Beta-TrCP (transducin 100.0 4.5E-28 9.8E-33 176.7 10.6 211 18-263 197-411 (499)
50 KOG0278 Serine/threonine kinas 100.0 1.1E-27 2.4E-32 167.3 12.0 237 1-267 42-282 (334)
51 KOG0282 mRNA splicing factor [ 100.0 9.3E-28 2E-32 181.4 12.6 203 8-237 248-503 (503)
52 KOG0283 WD40 repeat-containing 100.0 8.3E-27 1.8E-31 187.0 17.9 237 11-268 259-562 (712)
53 KOG0274 Cdc4 and related F-box 99.9 2.7E-26 5.9E-31 184.9 19.6 219 9-261 239-463 (537)
54 KOG0293 WD40 repeat-containing 99.9 7.8E-27 1.7E-31 173.6 14.3 211 9-240 260-514 (519)
55 PLN00181 protein SPA1-RELATED; 99.9 2.5E-25 5.4E-30 191.6 25.7 226 14-268 479-724 (793)
56 KOG0277 Peroxisomal targeting 99.9 3.6E-26 7.9E-31 159.9 16.1 186 17-264 59-246 (311)
57 KOG0275 Conserved WD40 repeat- 99.9 1.6E-27 3.6E-32 172.5 9.6 182 16-263 211-403 (508)
58 KOG0313 Microtubule binding pr 99.9 9.2E-26 2E-30 166.0 18.6 200 10-240 185-419 (423)
59 KOG0645 WD40 repeat protein [G 99.9 3.4E-25 7.3E-30 156.4 20.2 181 15-267 58-247 (312)
60 PLN00181 protein SPA1-RELATED; 99.9 6.1E-25 1.3E-29 189.2 25.8 223 17-268 531-779 (793)
61 KOG0640 mRNA cleavage stimulat 99.9 5.6E-26 1.2E-30 163.5 15.9 217 11-251 105-346 (430)
62 KOG1407 WD40 repeat protein [F 99.9 6.3E-25 1.4E-29 154.3 20.2 224 13-268 59-288 (313)
63 KOG0318 WD40 repeat stress pro 99.9 2.9E-24 6.4E-29 164.4 25.0 232 8-267 49-335 (603)
64 PTZ00421 coronin; Provisional 99.9 7.4E-25 1.6E-29 176.3 23.0 193 9-264 116-315 (493)
65 KOG0647 mRNA export protein (c 99.9 5.6E-25 1.2E-29 157.5 19.3 231 12-268 66-309 (347)
66 KOG0319 WD40-repeat-containing 99.9 4.6E-25 9.9E-30 174.8 20.5 234 9-267 314-562 (775)
67 KOG0264 Nucleosome remodeling 99.9 2.2E-25 4.7E-30 167.4 17.6 198 9-266 168-387 (422)
68 KOG0289 mRNA splicing factor [ 99.9 3.2E-25 6.9E-30 165.9 18.3 197 8-268 251-448 (506)
69 KOG0267 Microtubule severing p 99.9 1.1E-26 2.3E-31 183.6 9.0 193 9-267 61-253 (825)
70 KOG0265 U5 snRNP-specific prot 99.9 1.2E-24 2.6E-29 155.7 17.9 198 11-237 83-336 (338)
71 KOG0285 Pleiotropic regulator 99.9 1.6E-24 3.4E-29 158.7 18.4 212 8-240 225-440 (460)
72 KOG0269 WD40 repeat-containing 99.9 1.6E-25 3.5E-30 178.2 13.2 219 20-262 89-319 (839)
73 KOG0973 Histone transcription 99.9 2.1E-24 4.6E-29 177.6 19.8 236 8-267 59-340 (942)
74 KOG4283 Transcription-coupled 99.9 1.1E-24 2.5E-29 155.7 15.8 192 14-267 39-261 (397)
75 KOG0283 WD40 repeat-containing 99.9 9.3E-25 2E-29 175.4 17.2 205 7-240 358-577 (712)
76 KOG1332 Vesicle coat complex C 99.9 1.5E-24 3.4E-29 151.0 15.4 237 14-268 7-272 (299)
77 KOG0305 Anaphase promoting com 99.9 6.6E-24 1.4E-28 165.9 20.6 223 17-268 216-447 (484)
78 PTZ00420 coronin; Provisional 99.9 1.4E-23 3E-28 170.0 22.3 196 10-265 117-319 (568)
79 KOG0310 Conserved WD40 repeat- 99.9 4.6E-24 9.9E-29 161.7 17.9 229 11-267 61-294 (487)
80 KOG0641 WD40 repeat protein [G 99.9 1.3E-22 2.8E-27 140.3 22.2 238 10-267 25-288 (350)
81 KOG0278 Serine/threonine kinas 99.9 2.7E-24 5.8E-29 150.4 14.0 203 10-240 93-298 (334)
82 KOG0300 WD40 repeat-containing 99.9 1.3E-24 2.8E-29 157.1 12.7 232 9-269 139-374 (481)
83 KOG0772 Uncharacterized conser 99.9 2.2E-24 4.7E-29 164.8 14.3 242 7-268 156-425 (641)
84 KOG0294 WD40 repeat-containing 99.9 1.9E-23 4.1E-28 150.6 18.3 227 9-261 74-306 (362)
85 KOG0292 Vesicle coat complex C 99.9 3.7E-24 8.1E-29 173.2 16.2 191 12-267 3-221 (1202)
86 KOG2096 WD40 repeat protein [G 99.9 1.5E-23 3.3E-28 151.5 17.5 238 9-268 77-389 (420)
87 KOG0264 Nucleosome remodeling 99.9 6.2E-24 1.3E-28 159.6 15.8 193 16-267 122-331 (422)
88 KOG0294 WD40 repeat-containing 99.9 3.6E-23 7.9E-28 149.1 18.5 228 9-267 34-266 (362)
89 KOG0646 WD40 repeat protein [G 99.9 3.8E-23 8.3E-28 156.0 18.8 231 18-262 81-329 (476)
90 KOG0310 Conserved WD40 repeat- 99.9 6.1E-23 1.3E-27 155.7 20.0 203 10-239 102-309 (487)
91 KOG0640 mRNA cleavage stimulat 99.9 9.5E-24 2.1E-28 152.1 14.7 240 10-266 164-410 (430)
92 KOG0274 Cdc4 and related F-box 99.9 2.9E-23 6.3E-28 167.6 19.1 217 12-261 201-422 (537)
93 KOG0306 WD40-repeat-containing 99.9 1.5E-23 3.3E-28 166.8 16.4 233 9-268 405-650 (888)
94 KOG0275 Conserved WD40 repeat- 99.9 6.3E-24 1.4E-28 154.1 12.1 188 16-267 261-452 (508)
95 KOG0308 Conserved WD40 repeat- 99.9 9.2E-24 2E-28 165.4 13.7 199 10-263 65-266 (735)
96 KOG0643 Translation initiation 99.9 2.1E-22 4.6E-27 142.1 18.8 215 8-240 42-318 (327)
97 KOG1036 Mitotic spindle checkp 99.9 4.9E-22 1.1E-26 142.9 20.4 225 16-268 52-290 (323)
98 KOG0973 Histone transcription 99.9 7.7E-23 1.7E-27 168.6 17.7 200 17-268 12-235 (942)
99 KOG0302 Ribosome Assembly prot 99.9 1E-22 2.3E-27 150.1 16.3 194 9-264 142-359 (440)
100 KOG0641 WD40 repeat protein [G 99.9 1.2E-20 2.7E-25 130.6 24.5 232 12-268 83-336 (350)
101 KOG0300 WD40 repeat-containing 99.9 1.7E-22 3.6E-27 146.3 15.4 226 8-264 180-456 (481)
102 KOG4378 Nuclear protein COP1 [ 99.9 1.9E-22 4E-27 153.9 15.7 223 20-267 81-308 (673)
103 KOG1446 Histone H3 (Lys4) meth 99.9 3.5E-21 7.6E-26 139.0 20.9 204 8-240 90-304 (311)
104 KOG0289 mRNA splicing factor [ 99.9 2.1E-21 4.6E-26 145.7 19.5 197 10-268 295-492 (506)
105 KOG1332 Vesicle coat complex C 99.9 1.8E-21 4E-26 135.8 17.3 215 9-243 47-290 (299)
106 KOG2055 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 148.2 17.4 225 18-268 213-451 (514)
107 KOG0305 Anaphase promoting com 99.9 2.2E-21 4.8E-26 151.9 19.6 205 9-240 250-462 (484)
108 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-20 4.5E-25 144.3 25.1 236 9-267 22-263 (300)
109 KOG0288 WD40 repeat protein Ti 99.9 1.5E-22 3.3E-27 150.7 12.5 232 6-268 163-403 (459)
110 KOG0306 WD40-repeat-containing 99.9 4.4E-21 9.6E-26 152.9 20.7 223 13-266 368-606 (888)
111 KOG1273 WD40 repeat protein [G 99.9 1.8E-21 3.8E-26 140.7 16.4 233 9-268 16-265 (405)
112 KOG1408 WD40 repeat protein [F 99.9 9.6E-22 2.1E-26 156.2 16.3 232 14-267 455-698 (1080)
113 KOG0647 mRNA export protein (c 99.9 4.7E-21 1E-25 137.6 18.1 184 15-265 24-211 (347)
114 KOG0650 WD40 repeat nucleolar 99.9 1.9E-21 4.1E-26 151.4 17.0 240 4-267 386-665 (733)
115 KOG0322 G-protein beta subunit 99.9 8.6E-22 1.9E-26 138.9 13.8 250 5-267 1-308 (323)
116 KOG0302 Ribosome Assembly prot 99.9 7.9E-22 1.7E-26 145.5 14.2 172 8-240 201-379 (440)
117 KOG4328 WD40 protein [Function 99.9 2.7E-21 5.9E-26 145.9 17.2 235 11-267 179-435 (498)
118 KOG2048 WD40 repeat protein [G 99.9 3.1E-20 6.7E-25 146.4 23.3 228 18-266 25-259 (691)
119 KOG2445 Nuclear pore complex c 99.9 1.1E-20 2.4E-25 136.1 18.7 211 15-263 10-234 (361)
120 KOG1274 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 153.6 20.2 196 13-268 91-286 (933)
121 KOG0639 Transducin-like enhanc 99.9 4.1E-21 9E-26 146.9 16.4 223 16-268 417-649 (705)
122 KOG0301 Phospholipase A2-activ 99.9 1.1E-20 2.5E-25 149.3 19.2 219 12-268 51-275 (745)
123 KOG0301 Phospholipase A2-activ 99.9 8.6E-21 1.9E-25 149.9 17.6 224 9-268 5-236 (745)
124 KOG0270 WD40 repeat-containing 99.9 3.9E-21 8.4E-26 144.5 14.5 204 15-240 240-450 (463)
125 KOG0772 Uncharacterized conser 99.9 1.5E-20 3.3E-25 144.0 17.2 228 18-266 214-471 (641)
126 KOG0308 Conserved WD40 repeat- 99.9 6E-21 1.3E-25 149.8 15.3 175 9-248 108-294 (735)
127 KOG0299 U3 snoRNP-associated p 99.9 5.8E-20 1.3E-24 138.8 20.0 228 11-267 135-395 (479)
128 KOG0296 Angio-associated migra 99.9 8.6E-21 1.9E-25 139.4 14.9 212 1-239 174-398 (399)
129 KOG0268 Sof1-like rRNA process 99.9 3.8E-21 8.3E-26 141.3 13.0 226 9-268 100-331 (433)
130 KOG0321 WD40 repeat-containing 99.9 6.8E-20 1.5E-24 143.7 18.2 233 11-263 93-371 (720)
131 KOG0267 Microtubule severing p 99.9 1.2E-21 2.6E-26 155.4 8.2 191 12-268 22-212 (825)
132 KOG0303 Actin-binding protein 99.9 1.1E-19 2.3E-24 135.2 16.7 172 10-245 73-255 (472)
133 KOG1274 WD40 repeat protein [G 99.8 8.5E-19 1.8E-23 142.8 22.6 228 15-268 10-248 (933)
134 KOG0307 Vesicle coat complex C 99.8 4.6E-20 1E-24 153.3 14.5 226 18-265 64-309 (1049)
135 KOG1007 WD repeat protein TSSC 99.8 4.1E-19 8.9E-24 127.1 17.0 231 12-264 57-342 (370)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.6E-18 1.4E-22 130.4 24.8 221 10-262 65-300 (300)
137 KOG0307 Vesicle coat complex C 99.8 2E-20 4.4E-25 155.4 9.9 211 9-241 107-329 (1049)
138 KOG0642 Cell-cycle nuclear pro 99.8 1.3E-19 2.7E-24 140.3 13.6 216 8-252 334-573 (577)
139 KOG1034 Transcriptional repres 99.8 4.5E-20 9.9E-25 134.0 10.1 228 8-268 125-369 (385)
140 KOG0639 Transducin-like enhanc 99.8 7.7E-20 1.7E-24 140.0 11.4 199 9-238 500-703 (705)
141 KOG1539 WD repeat protein [Gen 99.8 9.2E-19 2E-23 141.3 18.1 195 17-240 447-649 (910)
142 KOG1036 Mitotic spindle checkp 99.8 3E-18 6.6E-23 123.5 18.4 176 17-263 12-188 (323)
143 KOG0270 WD40 repeat-containing 99.8 4.5E-19 9.7E-24 133.5 14.2 173 29-264 191-385 (463)
144 KOG0771 Prolactin regulatory e 99.8 5.1E-19 1.1E-23 132.5 14.1 190 22-268 148-340 (398)
145 KOG1273 WD40 repeat protein [G 99.8 5.4E-18 1.2E-22 122.9 18.7 204 10-240 57-323 (405)
146 KOG0269 WD40 repeat-containing 99.8 2E-19 4.4E-24 143.9 12.5 214 8-245 123-346 (839)
147 KOG1539 WD repeat protein [Gen 99.8 1.7E-17 3.7E-22 134.1 22.9 245 9-268 235-633 (910)
148 KOG2919 Guanine nucleotide-bin 99.8 1.7E-18 3.6E-23 125.9 15.2 226 19-263 105-351 (406)
149 KOG1009 Chromatin assembly com 99.8 8.9E-18 1.9E-22 125.4 17.6 87 10-100 57-159 (434)
150 KOG0642 Cell-cycle nuclear pro 99.8 2.2E-18 4.8E-23 133.5 14.4 208 12-268 288-547 (577)
151 KOG1063 RNA polymerase II elon 99.8 1.2E-17 2.7E-22 132.4 18.6 247 9-270 45-334 (764)
152 KOG4283 Transcription-coupled 99.8 8.6E-18 1.9E-22 120.8 14.9 173 14-241 97-278 (397)
153 KOG1538 Uncharacterized conser 99.8 1.1E-17 2.5E-22 132.6 16.7 222 20-268 14-279 (1081)
154 KOG1587 Cytoplasmic dynein int 99.8 1E-16 2.2E-21 129.2 20.8 234 17-268 241-502 (555)
155 KOG2106 Uncharacterized conser 99.8 2.5E-16 5.4E-21 121.0 21.7 217 13-268 240-463 (626)
156 KOG1188 WD40 repeat protein [G 99.8 1.7E-17 3.7E-22 121.4 14.3 174 31-264 41-223 (376)
157 KOG0321 WD40 repeat-containing 99.8 3.2E-17 7E-22 128.9 16.6 209 13-241 139-393 (720)
158 KOG2106 Uncharacterized conser 99.8 1.6E-16 3.5E-21 122.0 19.9 197 11-268 97-303 (626)
159 KOG1063 RNA polymerase II elon 99.8 1.8E-17 4E-22 131.4 15.2 199 10-263 517-734 (764)
160 KOG0290 Conserved WD40 repeat- 99.8 2.8E-17 6.1E-22 117.9 13.8 187 17-262 149-345 (364)
161 KOG0646 WD40 repeat protein [G 99.8 1.7E-17 3.8E-22 125.8 13.2 173 8-189 113-316 (476)
162 KOG4378 Nuclear protein COP1 [ 99.8 3.3E-17 7.2E-22 125.6 14.7 224 20-268 36-266 (673)
163 KOG2445 Nuclear pore complex c 99.8 7E-16 1.5E-20 111.6 20.4 207 10-269 51-305 (361)
164 KOG1310 WD40 repeat protein [G 99.8 7.5E-17 1.6E-21 125.2 15.9 224 10-248 42-312 (758)
165 KOG0303 Actin-binding protein 99.8 7.8E-17 1.7E-21 120.1 15.1 152 55-268 76-232 (472)
166 KOG2919 Guanine nucleotide-bin 99.7 2E-16 4.4E-21 115.2 16.5 195 21-267 52-265 (406)
167 KOG0290 Conserved WD40 repeat- 99.7 7.1E-17 1.5E-21 115.9 13.5 189 16-264 94-299 (364)
168 KOG1408 WD40 repeat protein [F 99.7 5.4E-16 1.2E-20 124.1 19.3 238 12-268 363-657 (1080)
169 KOG0644 Uncharacterized conser 99.7 1.4E-17 3E-22 134.9 9.8 230 10-268 182-454 (1113)
170 PRK01742 tolB translocation pr 99.7 1.2E-15 2.7E-20 122.9 19.9 220 12-263 197-426 (429)
171 KOG0649 WD40 repeat protein [G 99.7 3.5E-15 7.6E-20 104.8 19.3 222 19-264 11-258 (325)
172 PRK11028 6-phosphogluconolacto 99.7 1.6E-14 3.5E-19 113.0 24.2 240 9-267 26-288 (330)
173 KOG4227 WD40 repeat protein [G 99.7 4.6E-15 1E-19 111.1 19.7 242 8-268 94-373 (609)
174 KOG1007 WD repeat protein TSSC 99.7 9.2E-16 2E-20 110.2 14.7 211 32-263 28-269 (370)
175 KOG4227 WD40 repeat protein [G 99.7 5.5E-16 1.2E-20 115.9 13.7 199 10-267 48-259 (609)
176 KOG1523 Actin-related protein 99.7 1.1E-15 2.5E-20 111.1 14.8 195 13-268 5-222 (361)
177 KOG2055 WD40 repeat protein [G 99.7 1.8E-15 4E-20 115.0 15.7 205 11-239 295-512 (514)
178 KOG1009 Chromatin assembly com 99.7 9.6E-16 2.1E-20 114.7 13.7 170 18-240 13-196 (434)
179 KOG2096 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 110.8 14.0 189 55-267 81-293 (420)
180 KOG2110 Uncharacterized conser 99.7 1.9E-14 4.2E-19 106.6 20.1 219 18-268 5-234 (391)
181 KOG2394 WD40 protein DMR-N9 [G 99.7 2.5E-15 5.4E-20 116.4 16.0 200 28-262 183-384 (636)
182 KOG1538 Uncharacterized conser 99.7 3.2E-15 7E-20 119.0 16.5 207 7-240 42-294 (1081)
183 KOG2048 WD40 repeat protein [G 99.7 2.4E-14 5.2E-19 113.7 21.2 223 12-263 62-302 (691)
184 KOG4328 WD40 protein [Function 99.7 3.5E-15 7.6E-20 113.3 15.7 234 10-265 226-477 (498)
185 KOG0649 WD40 repeat protein [G 99.7 5.2E-14 1.1E-18 99.0 19.6 224 4-261 48-294 (325)
186 KOG1445 Tumor-specific antigen 99.7 1.3E-15 2.9E-20 120.4 12.9 184 27-267 588-779 (1012)
187 KOG1034 Transcriptional repres 99.7 1.4E-14 3E-19 105.9 16.6 169 14-240 34-212 (385)
188 PF08662 eIF2A: Eukaryotic tra 99.7 3.4E-14 7.4E-19 101.6 18.0 158 22-248 9-186 (194)
189 KOG1240 Protein kinase contain 99.7 1.4E-14 3E-19 122.2 17.8 198 10-263 1040-1249(1431)
190 KOG1445 Tumor-specific antigen 99.6 2.5E-15 5.4E-20 118.9 11.9 172 9-240 668-845 (1012)
191 COG2319 FOG: WD40 repeat [Gene 99.6 7.8E-13 1.7E-17 106.6 25.9 228 13-267 60-299 (466)
192 PRK03629 tolB translocation pr 99.6 2.3E-13 5E-18 109.6 22.3 220 14-262 194-427 (429)
193 KOG2394 WD40 protein DMR-N9 [G 99.6 3.3E-14 7.2E-19 110.3 15.4 163 18-240 219-453 (636)
194 COG2319 FOG: WD40 repeat [Gene 99.6 3.6E-13 7.8E-18 108.6 22.5 187 9-261 146-337 (466)
195 KOG1517 Guanine nucleotide bin 99.6 2.5E-13 5.3E-18 113.4 19.9 231 19-267 1065-1319(1387)
196 KOG0650 WD40 repeat nucleolar 99.6 5.3E-14 1.2E-18 110.5 14.5 200 13-236 516-732 (733)
197 PRK02889 tolB translocation pr 99.6 9.3E-13 2E-17 106.2 22.3 222 12-263 189-425 (427)
198 PRK04922 tolB translocation pr 99.6 6.7E-13 1.5E-17 107.4 21.4 223 12-262 197-432 (433)
199 PRK05137 tolB translocation pr 99.6 5.3E-13 1.2E-17 108.1 20.6 186 12-267 195-391 (435)
200 KOG2139 WD40 repeat protein [G 99.6 5.2E-13 1.1E-17 99.1 18.4 185 18-268 140-361 (445)
201 KOG1524 WD40 repeat-containing 99.6 2.8E-14 6E-19 110.9 12.0 167 31-267 76-242 (737)
202 KOG0322 G-protein beta subunit 99.6 4E-14 8.6E-19 100.6 11.6 161 17-238 149-322 (323)
203 KOG1523 Actin-related protein 99.6 2.1E-13 4.6E-18 99.5 15.5 206 7-265 44-262 (361)
204 KOG1354 Serine/threonine prote 99.6 2.3E-13 5E-18 100.3 15.7 243 18-267 25-344 (433)
205 KOG2139 WD40 repeat protein [G 99.6 2.7E-13 5.9E-18 100.6 15.6 195 18-267 98-295 (445)
206 KOG1188 WD40 repeat protein [G 99.6 1.3E-13 2.7E-18 101.4 13.7 173 8-240 60-243 (376)
207 KOG2110 Uncharacterized conser 99.6 3.8E-12 8.2E-17 94.7 21.0 192 20-240 48-249 (391)
208 KOG1272 WD40-repeat-containing 99.6 1.5E-14 3.4E-19 110.2 8.7 214 19-267 130-349 (545)
209 PF08662 eIF2A: Eukaryotic tra 99.6 2.8E-13 6.1E-18 96.9 14.6 120 18-189 59-187 (194)
210 KOG1963 WD40 repeat protein [G 99.6 4.7E-13 1E-17 109.4 17.5 231 14-268 12-308 (792)
211 KOG1334 WD40 repeat protein [G 99.6 3.3E-14 7.1E-19 109.1 9.9 84 10-95 134-218 (559)
212 KOG1963 WD40 repeat protein [G 99.5 1.9E-12 4.1E-17 106.0 19.5 78 16-97 203-284 (792)
213 PRK11028 6-phosphogluconolacto 99.5 8.2E-12 1.8E-16 97.8 20.7 215 33-267 5-242 (330)
214 PRK01742 tolB translocation pr 99.5 2E-12 4.3E-17 104.4 16.9 195 39-268 183-387 (429)
215 PF02239 Cytochrom_D1: Cytochr 99.5 3.6E-12 7.9E-17 100.0 17.1 236 9-267 27-283 (369)
216 KOG1524 WD40 repeat-containing 99.5 6.1E-13 1.3E-17 103.6 12.2 178 9-268 95-272 (737)
217 KOG0644 Uncharacterized conser 99.5 8.6E-14 1.9E-18 113.4 7.1 203 9-240 223-469 (1113)
218 PRK00178 tolB translocation pr 99.5 3E-11 6.4E-16 98.0 21.8 222 13-263 193-428 (430)
219 KOG2111 Uncharacterized conser 99.5 2.3E-11 5E-16 88.9 18.1 174 40-240 75-257 (346)
220 TIGR02800 propeller_TolB tol-p 99.5 2.1E-11 4.6E-16 98.7 20.1 186 12-267 183-379 (417)
221 PRK04792 tolB translocation pr 99.5 3.8E-11 8.2E-16 97.3 21.0 218 16-262 215-446 (448)
222 PF02239 Cytochrom_D1: Cytochr 99.4 8.1E-11 1.8E-15 92.5 20.3 177 33-267 9-186 (369)
223 KOG3881 Uncharacterized conser 99.4 1.2E-11 2.7E-16 92.6 14.7 181 19-263 149-342 (412)
224 KOG0771 Prolactin regulatory e 99.4 4E-12 8.7E-17 96.0 12.1 171 9-240 177-355 (398)
225 KOG1587 Cytoplasmic dynein int 99.4 1.4E-10 2.9E-15 94.4 21.6 210 39-264 221-453 (555)
226 KOG2111 Uncharacterized conser 99.4 2.2E-11 4.8E-16 89.1 15.3 85 12-98 175-260 (346)
227 PRK02889 tolB translocation pr 99.4 5.4E-11 1.2E-15 96.1 18.7 196 40-267 176-385 (427)
228 KOG1064 RAVE (regulator of V-A 99.4 4.7E-12 1E-16 111.1 11.5 197 15-249 2205-2407(2439)
229 KOG1517 Guanine nucleotide bin 99.4 3.5E-11 7.7E-16 101.0 15.8 202 22-240 1169-1382(1387)
230 PF10282 Lactonase: Lactonase, 99.4 2E-09 4.2E-14 84.7 24.8 234 19-267 37-306 (345)
231 PRK05137 tolB translocation pr 99.4 1.2E-10 2.7E-15 94.4 18.3 160 40-268 182-349 (435)
232 PRK03629 tolB translocation pr 99.3 2.9E-10 6.2E-15 91.9 19.5 160 40-268 179-346 (429)
233 KOG0280 Uncharacterized conser 99.3 5E-10 1.1E-14 81.3 17.9 188 18-264 69-265 (339)
234 PRK04922 tolB translocation pr 99.3 2.1E-10 4.6E-15 92.9 18.2 198 40-267 184-393 (433)
235 KOG2321 WD40 repeat protein [G 99.3 6.2E-11 1.3E-15 93.3 12.9 191 22-266 137-327 (703)
236 KOG4497 Uncharacterized conser 99.3 5E-12 1.1E-16 93.0 6.4 115 23-186 13-128 (447)
237 KOG2321 WD40 repeat protein [G 99.3 7.6E-10 1.6E-14 87.4 18.5 227 16-263 49-282 (703)
238 KOG3881 Uncharacterized conser 99.3 5.9E-10 1.3E-14 83.9 16.9 230 17-269 54-307 (412)
239 KOG0974 WD-repeat protein WDR6 99.3 5.4E-11 1.2E-15 99.4 12.4 150 25-240 140-289 (967)
240 KOG1310 WD40 repeat protein [G 99.3 1.8E-11 3.9E-16 95.9 8.7 172 53-239 43-231 (758)
241 COG5170 CDC55 Serine/threonine 99.3 2E-10 4.3E-15 84.2 13.2 228 18-252 26-322 (460)
242 KOG4547 WD40 repeat-containing 99.3 8.3E-10 1.8E-14 87.2 17.2 174 28-263 3-195 (541)
243 PF00400 WD40: WD domain, G-be 99.2 1.7E-11 3.6E-16 63.6 4.7 38 9-46 2-39 (39)
244 KOG1832 HIV-1 Vpr-binding prot 99.2 2.6E-11 5.7E-16 100.2 7.8 215 9-267 1092-1316(1516)
245 KOG4497 Uncharacterized conser 99.2 1.7E-09 3.6E-14 80.0 16.2 94 154-267 324-417 (447)
246 KOG4190 Uncharacterized conser 99.2 3.7E-11 7.9E-16 94.6 8.0 178 11-247 728-913 (1034)
247 KOG1272 WD40-repeat-containing 99.2 4.1E-11 9E-16 91.9 7.7 186 10-264 202-391 (545)
248 PRK01029 tolB translocation pr 99.2 2.1E-08 4.5E-13 81.0 23.0 222 17-264 183-426 (428)
249 TIGR02658 TTQ_MADH_Hv methylam 99.2 4E-08 8.7E-13 76.1 23.4 218 26-265 53-311 (352)
250 KOG0974 WD-repeat protein WDR6 99.2 1.1E-10 2.5E-15 97.5 9.9 79 13-97 170-249 (967)
251 KOG2314 Translation initiation 99.1 4.7E-09 1E-13 82.7 15.5 73 21-100 213-296 (698)
252 TIGR02800 propeller_TolB tol-p 99.1 7.5E-09 1.6E-13 83.9 17.6 162 39-268 169-337 (417)
253 PRK04792 tolB translocation pr 99.1 6.5E-09 1.4E-13 84.5 17.1 159 41-267 199-364 (448)
254 KOG1334 WD40 repeat protein [G 99.1 7.8E-10 1.7E-14 85.6 10.8 209 12-240 226-467 (559)
255 KOG3914 WD repeat protein WDR4 99.1 3.2E-09 6.9E-14 80.3 12.8 162 65-249 65-232 (390)
256 KOG1240 Protein kinase contain 99.1 3.1E-08 6.6E-13 85.1 19.8 237 18-261 1098-1356(1431)
257 KOG2315 Predicted translation 99.1 4.1E-08 8.9E-13 77.5 19.0 218 22-268 129-370 (566)
258 PRK00178 tolB translocation pr 99.1 3.4E-08 7.3E-13 80.3 19.2 160 41-268 180-346 (430)
259 KOG2041 WD40 repeat protein [G 99.1 8.6E-10 1.9E-14 89.5 9.6 208 10-268 63-274 (1189)
260 PRK04043 tolB translocation pr 99.1 1.5E-07 3.3E-12 75.6 22.3 210 20-257 189-416 (419)
261 KOG4547 WD40 repeat-containing 99.1 1.3E-08 2.8E-13 80.6 15.6 152 30-240 70-221 (541)
262 COG5354 Uncharacterized protei 99.1 1.3E-07 2.7E-12 74.1 20.5 223 19-267 72-374 (561)
263 KOG0280 Uncharacterized conser 99.1 8.4E-09 1.8E-13 75.1 13.0 178 21-260 124-309 (339)
264 PF10282 Lactonase: Lactonase, 99.1 4.2E-07 9.1E-12 71.6 23.7 222 19-260 87-345 (345)
265 KOG1409 Uncharacterized conser 99.0 2.1E-09 4.5E-14 79.9 9.4 87 8-98 187-274 (404)
266 KOG2315 Predicted translation 99.0 5.4E-08 1.2E-12 76.9 15.9 168 22-262 221-410 (566)
267 PF00400 WD40: WD domain, G-be 99.0 2.7E-09 5.8E-14 55.2 5.9 39 50-92 1-39 (39)
268 KOG4532 WD40-like repeat conta 99.0 2.4E-07 5.3E-12 66.9 16.7 185 22-270 71-272 (344)
269 COG2706 3-carboxymuconate cycl 98.9 6.2E-06 1.3E-10 62.3 24.5 241 16-268 37-306 (346)
270 KOG2695 WD40 repeat protein [G 98.9 9.2E-09 2E-13 76.6 9.2 175 25-262 218-402 (425)
271 KOG1354 Serine/threonine prote 98.9 1.6E-08 3.5E-13 75.3 10.5 185 10-240 155-360 (433)
272 PF04762 IKI3: IKI3 family; I 98.9 5.5E-07 1.2E-11 78.9 21.5 225 17-268 74-320 (928)
273 KOG1645 RING-finger-containing 98.9 1.3E-07 2.9E-12 71.9 15.2 84 10-97 185-269 (463)
274 KOG4714 Nucleoporin [Nuclear s 98.9 1.8E-08 3.9E-13 72.3 10.0 193 21-240 39-255 (319)
275 KOG1409 Uncharacterized conser 98.9 1.5E-07 3.3E-12 70.2 14.6 229 7-260 13-248 (404)
276 KOG3914 WD repeat protein WDR4 98.9 4.5E-09 9.8E-14 79.5 6.6 84 12-100 145-229 (390)
277 KOG2695 WD40 repeat protein [G 98.9 8.4E-09 1.8E-13 76.8 7.5 131 17-190 251-386 (425)
278 PRK01029 tolB translocation pr 98.9 6.3E-07 1.4E-11 72.5 18.4 166 40-268 165-342 (428)
279 TIGR02658 TTQ_MADH_Hv methylam 98.8 5E-06 1.1E-10 64.6 21.8 202 22-249 108-339 (352)
280 KOG0309 Conserved WD40 repeat- 98.8 1.2E-08 2.7E-13 83.2 7.7 194 8-262 104-309 (1081)
281 COG2706 3-carboxymuconate cycl 98.8 1.1E-05 2.5E-10 60.9 22.2 222 22-261 92-345 (346)
282 COG4946 Uncharacterized protei 98.8 1.9E-06 4.2E-11 67.4 18.0 171 26-267 327-503 (668)
283 COG5354 Uncharacterized protei 98.8 1.1E-06 2.5E-11 68.9 16.6 218 17-266 31-288 (561)
284 KOG1912 WD40 repeat protein [G 98.8 1.2E-06 2.6E-11 72.4 16.6 214 8-240 45-305 (1062)
285 KOG4532 WD40-like repeat conta 98.7 1.8E-06 4E-11 62.5 15.5 177 33-265 131-315 (344)
286 PRK04043 tolB translocation pr 98.7 1E-05 2.2E-10 65.3 20.3 197 40-267 169-382 (419)
287 PF15492 Nbas_N: Neuroblastoma 98.7 2.7E-05 5.8E-10 57.2 19.8 74 21-95 46-128 (282)
288 KOG0309 Conserved WD40 repeat- 98.7 3.1E-07 6.7E-12 75.4 10.8 225 18-262 24-255 (1081)
289 PLN02919 haloacid dehalogenase 98.7 9.5E-06 2.1E-10 72.7 20.8 189 21-240 685-889 (1057)
290 PF07433 DUF1513: Protein of u 98.7 1.8E-05 4E-10 59.6 19.1 169 10-189 48-256 (305)
291 PF08450 SGL: SMP-30/Gluconola 98.7 6.9E-05 1.5E-09 56.2 24.0 216 22-265 3-238 (246)
292 PLN02919 haloacid dehalogenase 98.6 5.7E-05 1.2E-09 67.9 25.2 235 22-267 571-873 (1057)
293 COG4946 Uncharacterized protei 98.5 1.7E-05 3.7E-10 62.3 16.3 78 16-98 357-435 (668)
294 KOG1920 IkappaB kinase complex 98.5 3.9E-05 8.5E-10 66.8 19.8 225 19-268 69-305 (1265)
295 KOG4714 Nucleoporin [Nuclear s 98.5 3.5E-07 7.5E-12 65.8 6.5 74 19-95 180-255 (319)
296 PF11768 DUF3312: Protein of u 98.5 8.1E-07 1.8E-11 71.2 9.2 75 17-97 258-332 (545)
297 KOG1064 RAVE (regulator of V-A 98.5 4.8E-07 1E-11 81.0 8.1 121 8-190 2282-2408(2439)
298 KOG2066 Vacuolar assembly/sort 98.5 2.6E-05 5.7E-10 64.9 17.2 164 14-240 54-234 (846)
299 TIGR03300 assembly_YfgL outer 98.4 6E-05 1.3E-09 60.4 18.4 199 31-254 146-352 (377)
300 KOG1275 PAB-dependent poly(A) 98.4 4.2E-06 9.2E-11 70.5 11.6 151 21-238 180-341 (1118)
301 PF13360 PQQ_2: PQQ-like domai 98.4 0.00014 3E-09 54.3 18.5 185 29-246 35-236 (238)
302 KOG1275 PAB-dependent poly(A) 98.4 1.1E-05 2.3E-10 68.1 13.2 172 29-268 146-328 (1118)
303 KOG2041 WD40 repeat protein [G 98.4 3.6E-06 7.8E-11 69.2 10.0 77 19-99 15-106 (1189)
304 PF11768 DUF3312: Protein of u 98.4 4.7E-05 1E-09 61.4 15.8 66 154-240 265-330 (545)
305 smart00320 WD40 WD40 repeats. 98.3 1.2E-06 2.6E-11 44.5 4.1 38 9-46 3-40 (40)
306 KOG2314 Translation initiation 98.3 1.6E-05 3.5E-10 63.5 11.2 141 65-268 213-362 (698)
307 KOG0882 Cyclophilin-related pe 98.3 9.1E-06 2E-10 63.2 9.3 214 17-248 8-239 (558)
308 TIGR03300 assembly_YfgL outer 98.3 0.00021 4.5E-09 57.3 17.5 184 30-248 105-305 (377)
309 KOG4190 Uncharacterized conser 98.2 4.2E-06 9.1E-11 66.9 7.2 155 54-268 729-892 (1034)
310 KOG1832 HIV-1 Vpr-binding prot 98.2 1.7E-06 3.7E-11 72.7 5.1 186 52-267 1093-1281(1516)
311 PF07433 DUF1513: Protein of u 98.2 0.0013 2.7E-08 50.0 20.1 222 22-264 8-269 (305)
312 COG0823 TolB Periplasmic compo 98.2 8.5E-05 1.8E-09 59.8 13.6 97 154-268 243-341 (425)
313 PF06977 SdiA-regulated: SdiA- 98.2 0.0013 2.9E-08 48.9 21.5 205 13-266 16-235 (248)
314 KOG2114 Vacuolar assembly/sort 98.1 0.00056 1.2E-08 57.9 17.3 200 25-252 30-256 (933)
315 PRK02888 nitrous-oxide reducta 98.1 0.0005 1.1E-08 57.1 16.6 182 26-240 200-405 (635)
316 PF04762 IKI3: IKI3 family; I 98.1 0.0005 1.1E-08 61.0 17.7 94 154-263 262-359 (928)
317 KOG1008 Uncharacterized conser 98.1 1.2E-06 2.6E-11 70.9 1.4 186 18-264 56-255 (783)
318 COG5170 CDC55 Serine/threonine 98.1 2.8E-05 6.1E-10 57.8 8.1 144 15-189 169-319 (460)
319 KOG1912 WD40 repeat protein [G 98.1 6.9E-05 1.5E-09 62.5 10.9 150 63-262 16-165 (1062)
320 KOG3617 WD40 and TPR repeat-co 98.0 0.00015 3.3E-09 61.3 12.7 71 21-95 62-132 (1416)
321 KOG1008 Uncharacterized conser 98.0 4.3E-06 9.4E-11 67.8 3.7 159 14-180 98-275 (783)
322 PF13360 PQQ_2: PQQ-like domai 98.0 0.0025 5.5E-08 47.4 19.8 141 39-189 2-149 (238)
323 KOG4640 Anaphase-promoting com 98.0 4E-05 8.8E-10 62.2 8.4 79 17-100 19-98 (665)
324 COG0823 TolB Periplasmic compo 98.0 0.0014 3E-08 53.1 17.0 163 18-189 192-367 (425)
325 KOG2066 Vacuolar assembly/sort 98.0 0.00013 2.9E-09 61.0 11.0 171 18-266 39-219 (846)
326 smart00320 WD40 WD40 repeats. 97.9 5.1E-05 1.1E-09 38.1 5.4 38 51-92 3-40 (40)
327 PF08596 Lgl_C: Lethal giant l 97.9 0.0011 2.4E-08 53.0 14.6 225 10-267 78-321 (395)
328 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0028 6.1E-08 40.3 14.2 67 21-95 2-72 (111)
329 KOG3621 WD40 repeat-containing 97.8 0.0022 4.7E-08 53.3 15.0 77 17-95 75-155 (726)
330 PRK11138 outer membrane biogen 97.8 0.009 1.9E-07 48.3 18.7 196 32-250 162-363 (394)
331 PF04053 Coatomer_WDAD: Coatom 97.8 0.0038 8.3E-08 50.7 16.1 172 10-263 24-207 (443)
332 KOG1645 RING-finger-containing 97.8 0.00018 3.8E-09 55.5 7.9 79 154-250 199-277 (463)
333 PF12894 Apc4_WD40: Anaphase-p 97.7 0.00015 3.2E-09 38.5 5.1 34 18-52 11-44 (47)
334 KOG1920 IkappaB kinase complex 97.7 0.013 2.9E-07 51.9 19.0 29 18-46 109-137 (1265)
335 PRK11138 outer membrane biogen 97.7 0.0043 9.3E-08 50.2 15.3 64 30-100 120-184 (394)
336 PF04841 Vps16_N: Vps16, N-ter 97.6 0.025 5.4E-07 45.9 23.1 67 24-96 34-111 (410)
337 PF06433 Me-amine-dh_H: Methyl 97.6 0.021 4.6E-07 44.2 21.6 204 23-251 99-331 (342)
338 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0076 1.7E-07 38.3 12.9 31 65-95 2-34 (111)
339 PRK02888 nitrous-oxide reducta 97.5 0.0022 4.8E-08 53.4 11.8 37 230-267 295-335 (635)
340 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.018 3.9E-07 45.8 16.2 222 18-267 42-295 (353)
341 COG3391 Uncharacterized conser 97.5 0.039 8.4E-07 44.4 21.0 185 20-263 117-309 (381)
342 KOG0882 Cyclophilin-related pe 97.5 0.0012 2.6E-08 51.9 8.7 173 9-189 44-240 (558)
343 COG3391 Uncharacterized conser 97.4 0.041 8.9E-07 44.3 19.7 184 22-267 77-267 (381)
344 PF05694 SBP56: 56kDa selenium 97.4 0.049 1.1E-06 43.6 17.5 219 4-267 108-388 (461)
345 PF06433 Me-amine-dh_H: Methyl 97.4 0.031 6.8E-07 43.3 15.1 144 40-245 17-171 (342)
346 PF08553 VID27: VID27 cytoplas 97.3 0.0039 8.4E-08 53.9 11.1 118 133-268 506-634 (794)
347 KOG3621 WD40 repeat-containing 97.3 0.003 6.6E-08 52.5 9.8 77 17-96 32-108 (726)
348 PF15492 Nbas_N: Neuroblastoma 97.2 0.049 1.1E-06 40.7 20.1 71 24-97 3-76 (282)
349 PF02897 Peptidase_S9_N: Proly 97.2 0.089 1.9E-06 42.9 20.7 72 20-97 125-213 (414)
350 KOG4640 Anaphase-promoting com 97.2 0.0025 5.4E-08 52.3 8.0 90 154-262 26-115 (665)
351 KOG2395 Protein involved in va 97.2 0.022 4.7E-07 46.3 12.8 86 168-268 400-487 (644)
352 PF14583 Pectate_lyase22: Olig 97.1 0.038 8.2E-07 43.7 13.8 202 25-267 42-252 (386)
353 KOG2079 Vacuolar assembly/sort 97.1 0.022 4.8E-07 50.1 13.3 78 29-111 98-175 (1206)
354 COG3490 Uncharacterized protei 97.1 0.07 1.5E-06 40.1 16.6 56 25-84 120-181 (366)
355 KOG2114 Vacuolar assembly/sort 97.1 0.11 2.4E-06 44.9 16.8 174 9-190 55-253 (933)
356 KOG2079 Vacuolar assembly/sort 97.1 0.0032 7E-08 55.0 8.2 73 18-94 130-203 (1206)
357 PF05096 Glu_cyclase_2: Glutam 97.0 0.085 1.8E-06 39.5 19.6 183 19-266 45-244 (264)
358 PF04053 Coatomer_WDAD: Coatom 97.0 0.055 1.2E-06 44.2 14.3 86 155-268 75-160 (443)
359 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0051 1.1E-07 32.6 5.6 30 63-94 12-41 (47)
360 PF08450 SGL: SMP-30/Gluconola 97.0 0.097 2.1E-06 39.3 22.3 157 21-190 42-222 (246)
361 COG3204 Uncharacterized protei 96.9 0.12 2.6E-06 39.0 17.2 204 14-265 81-296 (316)
362 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.12 2.5E-06 38.4 15.4 66 30-100 63-129 (354)
363 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.16 3.4E-06 37.8 15.1 111 30-190 23-133 (354)
364 KOG3617 WD40 and TPR repeat-co 96.6 0.0034 7.3E-08 53.6 4.9 95 154-268 21-117 (1416)
365 cd00216 PQQ_DH Dehydrogenases 96.6 0.35 7.6E-06 40.5 18.8 67 170-250 364-434 (488)
366 PF00930 DPPIV_N: Dipeptidyl p 96.6 0.29 6.2E-06 39.1 18.9 93 158-268 245-343 (353)
367 COG3490 Uncharacterized protei 96.5 0.069 1.5E-06 40.1 10.4 100 154-268 73-177 (366)
368 PF03178 CPSF_A: CPSF A subuni 96.5 0.29 6.4E-06 38.4 16.8 180 40-239 2-202 (321)
369 PF08596 Lgl_C: Lethal giant l 96.5 0.16 3.4E-06 41.0 13.1 75 20-99 3-120 (395)
370 PF10168 Nup88: Nuclear pore c 96.4 0.57 1.2E-05 41.0 17.3 80 17-97 83-182 (717)
371 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.05 1.1E-06 43.9 9.7 86 10-99 299-403 (415)
372 cd00216 PQQ_DH Dehydrogenases 96.3 0.56 1.2E-05 39.3 19.4 68 30-100 61-134 (488)
373 PF10313 DUF2415: Uncharacteri 96.3 0.035 7.7E-07 28.6 5.5 31 19-49 1-34 (43)
374 PF12234 Rav1p_C: RAVE protein 96.2 0.43 9.4E-06 40.7 14.7 71 22-93 33-103 (631)
375 PF14870 PSII_BNR: Photosynthe 96.2 0.42 9E-06 37.0 15.3 70 18-92 144-213 (302)
376 PRK13616 lipoprotein LpqB; Pro 96.2 0.73 1.6E-05 39.5 17.9 59 19-84 350-416 (591)
377 PF08553 VID27: VID27 cytoplas 95.9 0.034 7.3E-07 48.4 7.2 71 18-94 577-647 (794)
378 COG3386 Gluconolactonase [Carb 95.8 0.64 1.4E-05 36.2 19.4 210 25-262 31-264 (307)
379 PHA02713 hypothetical protein; 95.8 0.61 1.3E-05 39.8 14.2 21 219-240 512-534 (557)
380 PF00780 CNH: CNH domain; Int 95.7 0.68 1.5E-05 35.4 18.3 61 29-97 6-67 (275)
381 COG3823 Glutamine cyclotransfe 95.5 0.46 1E-05 34.2 10.1 33 65-100 48-82 (262)
382 PF10313 DUF2415: Uncharacteri 95.4 0.08 1.7E-06 27.3 4.6 32 64-96 2-35 (43)
383 PF02897 Peptidase_S9_N: Proly 95.2 1.4 3.1E-05 36.0 15.9 32 65-98 126-162 (414)
384 COG4590 ABC-type uncharacteriz 95.1 0.087 1.9E-06 42.3 6.3 165 9-188 211-394 (733)
385 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.8 2.3 4.9E-05 36.1 19.9 66 30-100 69-144 (527)
386 PRK13616 lipoprotein LpqB; Pro 94.7 0.3 6.6E-06 41.7 9.1 90 154-267 355-462 (591)
387 PF15390 DUF4613: Domain of un 94.7 0.69 1.5E-05 38.7 10.5 78 17-96 55-144 (671)
388 PF07569 Hira: TUP1-like enhan 94.7 0.39 8.4E-06 35.4 8.5 70 26-98 18-99 (219)
389 KOG4441 Proteins containing BT 94.4 2.9 6.4E-05 35.9 16.1 67 29-99 332-409 (571)
390 KOG4499 Ca2+-binding protein R 94.2 1.6 3.5E-05 32.2 16.5 94 154-262 163-263 (310)
391 KOG2444 WD40 repeat protein [G 94.0 0.21 4.6E-06 36.3 5.7 64 29-95 113-178 (238)
392 TIGR02276 beta_rpt_yvtn 40-res 94.0 0.4 8.6E-06 24.4 5.5 41 219-261 2-42 (42)
393 PF14655 RAB3GAP2_N: Rab3 GTPa 94.0 0.69 1.5E-05 37.5 9.1 84 154-249 313-407 (415)
394 TIGR02276 beta_rpt_yvtn 40-res 93.9 0.36 7.8E-06 24.5 5.3 31 158-189 1-31 (42)
395 PF06977 SdiA-regulated: SdiA- 93.2 2.8 6.1E-05 31.5 14.5 75 19-95 65-148 (248)
396 KOG2395 Protein involved in va 93.1 0.35 7.6E-06 39.7 6.1 68 21-94 433-500 (644)
397 KOG2444 WD40 repeat protein [G 92.8 0.76 1.7E-05 33.5 6.9 41 223-264 116-157 (238)
398 KOG2377 Uncharacterized conser 92.8 4.7 0.0001 33.0 12.6 154 22-180 26-185 (657)
399 KOG4499 Ca2+-binding protein R 92.7 3.1 6.7E-05 30.8 12.1 47 154-215 217-263 (310)
400 TIGR03074 PQQ_membr_DH membran 92.6 7.3 0.00016 34.8 18.3 71 30-100 260-350 (764)
401 PF10647 Gmad1: Lipoprotein Lp 92.3 3.1 6.7E-05 31.5 10.1 94 154-267 29-126 (253)
402 PF05694 SBP56: 56kDa selenium 92.2 3.8 8.3E-05 33.4 10.6 71 21-91 183-274 (461)
403 PF15390 DUF4613: Domain of un 92.0 6.9 0.00015 33.2 14.5 163 17-240 18-187 (671)
404 KOG4441 Proteins containing BT 92.0 7.5 0.00016 33.5 13.0 68 29-100 284-363 (571)
405 PHA02713 hypothetical protein; 91.8 7.8 0.00017 33.3 15.2 66 29-98 303-379 (557)
406 PF05096 Glu_cyclase_2: Glutam 91.6 4.7 0.0001 30.5 14.3 130 52-249 35-166 (264)
407 PF03178 CPSF_A: CPSF A subuni 91.6 5.6 0.00012 31.3 18.4 71 17-95 87-158 (321)
408 PF04841 Vps16_N: Vps16, N-ter 91.5 6.8 0.00015 32.1 17.6 29 19-48 81-109 (410)
409 KOG2377 Uncharacterized conser 91.4 2.4 5.3E-05 34.5 8.8 77 15-95 63-141 (657)
410 KOG3630 Nuclear pore complex, 91.4 7.7 0.00017 35.7 12.4 50 154-215 204-253 (1405)
411 TIGR03118 PEPCTERM_chp_1 conse 91.0 6 0.00013 30.6 20.6 75 20-94 24-118 (336)
412 KOG1916 Nuclear protein, conta 90.8 0.38 8.2E-06 42.2 4.2 66 24-94 189-265 (1283)
413 PF12234 Rav1p_C: RAVE protein 90.7 3.4 7.3E-05 35.6 9.5 87 168-268 47-144 (631)
414 PF10168 Nup88: Nuclear pore c 90.6 12 0.00025 33.3 15.8 45 203-249 145-189 (717)
415 PF11715 Nup160: Nucleoporin N 90.2 1.6 3.4E-05 37.3 7.5 72 28-99 156-253 (547)
416 PF11715 Nup160: Nucleoporin N 90.2 0.92 2E-05 38.7 6.1 38 19-56 215-256 (547)
417 PF12657 TFIIIC_delta: Transcr 90.1 3.6 7.9E-05 29.0 8.1 32 64-95 87-122 (173)
418 COG5167 VID27 Protein involved 89.9 4.1 9E-05 33.8 9.0 45 223-268 575-619 (776)
419 COG3386 Gluconolactonase [Carb 89.9 8 0.00017 30.3 16.9 70 20-95 112-194 (307)
420 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.7 12 0.00026 32.0 22.3 57 41-99 272-338 (527)
421 PF00780 CNH: CNH domain; Int 89.6 7.7 0.00017 29.6 19.8 76 20-96 37-124 (275)
422 PF07995 GSDH: Glucose / Sorbo 89.4 9.3 0.0002 30.3 13.6 51 20-72 3-58 (331)
423 COG5276 Uncharacterized conser 89.3 8.5 0.00018 29.7 15.6 46 223-268 183-229 (370)
424 PF07569 Hira: TUP1-like enhan 89.0 1.2 2.6E-05 32.9 5.1 45 223-267 24-81 (219)
425 PF07676 PD40: WD40-like Beta 88.6 1.9 4.2E-05 21.4 4.7 29 17-45 7-38 (39)
426 PRK10115 protease 2; Provision 88.5 17 0.00037 32.2 22.5 72 19-96 127-209 (686)
427 PF14269 Arylsulfotran_2: Aryl 88.5 10 0.00022 29.6 14.9 75 20-94 145-220 (299)
428 KOG2247 WD40 repeat-containing 88.4 0.2 4.3E-06 40.7 0.8 96 154-268 80-175 (615)
429 KOG3630 Nuclear pore complex, 88.4 2.3 4.9E-05 38.8 7.0 61 17-81 197-260 (1405)
430 PF14583 Pectate_lyase22: Olig 88.4 12 0.00026 30.2 22.4 55 24-80 86-140 (386)
431 TIGR03606 non_repeat_PQQ dehyd 88.1 14 0.0003 30.7 14.5 56 17-72 28-88 (454)
432 PF14727 PHTB1_N: PTHB1 N-term 87.7 14 0.00031 30.3 16.4 65 30-94 37-105 (418)
433 smart00564 PQQ beta-propeller 87.7 1.8 4E-05 20.4 3.8 25 32-56 8-32 (33)
434 KOG2280 Vacuolar assembly/sort 87.2 20 0.00044 31.5 15.1 167 11-189 76-255 (829)
435 PF14781 BBS2_N: Ciliary BBSom 87.0 7.2 0.00016 26.1 13.3 72 22-97 2-84 (136)
436 PF08728 CRT10: CRT10; InterP 86.9 5.9 0.00013 34.7 8.5 83 10-93 156-245 (717)
437 KOG2280 Vacuolar assembly/sort 86.6 22 0.00047 31.3 12.3 51 41-97 65-115 (829)
438 PHA03098 kelch-like protein; P 86.4 20 0.00043 30.6 19.1 68 29-100 294-372 (534)
439 PF14761 HPS3_N: Hermansky-Pud 86.4 7.5 0.00016 28.4 7.6 56 154-229 21-79 (215)
440 PF01731 Arylesterase: Arylest 85.6 4.6 9.9E-05 24.7 5.4 30 151-181 56-85 (86)
441 PRK10115 protease 2; Provision 85.5 16 0.00035 32.4 10.7 96 154-267 132-237 (686)
442 COG5167 VID27 Protein involved 85.1 3.2 6.9E-05 34.4 5.8 59 31-94 574-632 (776)
443 KOG3616 Selective LIM binding 85.0 3.6 7.7E-05 35.9 6.3 69 18-93 14-82 (1636)
444 PF01011 PQQ: PQQ enzyme repea 84.5 3.6 7.7E-05 20.4 4.1 27 223-250 2-28 (38)
445 PF14761 HPS3_N: Hermansky-Pud 84.0 14 0.00031 27.0 13.1 49 31-84 29-79 (215)
446 PHA02790 Kelch-like protein; P 83.8 25 0.00055 29.6 17.1 67 29-99 271-344 (480)
447 PF10395 Utp8: Utp8 family; I 83.3 31 0.00067 30.2 20.1 85 7-96 59-161 (670)
448 PF10395 Utp8: Utp8 family; I 83.0 32 0.00069 30.2 15.5 32 18-49 129-160 (670)
449 PF12341 DUF3639: Protein of u 82.7 3.5 7.5E-05 18.9 3.4 25 64-92 3-27 (27)
450 TIGR03074 PQQ_membr_DH membran 81.0 42 0.00091 30.3 19.5 70 30-99 194-283 (764)
451 TIGR02604 Piru_Ver_Nterm putat 80.2 29 0.00064 28.0 14.4 55 207-267 126-198 (367)
452 KOG1896 mRNA cleavage and poly 80.1 54 0.0012 30.9 13.0 27 154-180 1187-1213(1366)
453 PF08728 CRT10: CRT10; InterP 79.7 44 0.00095 29.7 13.7 74 19-95 101-196 (717)
454 PF03088 Str_synth: Strictosid 79.2 12 0.00027 23.0 7.8 41 37-82 34-74 (89)
455 PHA03098 kelch-like protein; P 78.4 42 0.00091 28.7 12.7 68 29-100 342-420 (534)
456 KOG3522 Predicted guanine nucl 77.1 26 0.00057 31.3 8.7 55 32-91 549-606 (925)
457 PF14779 BBS1: Ciliary BBSome 75.6 33 0.00072 26.1 9.1 72 17-91 175-255 (257)
458 smart00036 CNH Domain found in 75.2 29 0.00064 27.1 8.2 60 29-95 12-74 (302)
459 PF08801 Nucleoporin_N: Nup133 74.2 48 0.0011 27.4 12.2 29 207-240 192-220 (422)
460 KOG4460 Nuclear pore complex, 72.4 60 0.0013 27.6 16.7 80 19-98 104-202 (741)
461 KOG1897 Damage-specific DNA bi 72.0 83 0.0018 29.0 16.6 75 18-94 530-613 (1096)
462 COG3204 Uncharacterized protei 71.9 45 0.00097 25.9 11.6 36 63-100 86-121 (316)
463 PF13570 PQQ_3: PQQ-like domai 71.8 8.7 0.00019 19.2 3.2 21 29-49 20-40 (40)
464 PF01436 NHL: NHL repeat; Int 71.6 8.6 0.00019 17.5 4.3 24 21-44 4-27 (28)
465 PF10214 Rrn6: RNA polymerase 71.6 80 0.0017 28.7 15.6 87 9-98 133-236 (765)
466 TIGR02604 Piru_Ver_Nterm putat 70.8 55 0.0012 26.5 16.1 62 19-86 14-91 (367)
467 PF13449 Phytase-like: Esteras 70.0 54 0.0012 26.0 14.8 107 154-268 90-230 (326)
468 KOG2247 WD40 repeat-containing 69.3 1.3 2.9E-05 36.2 -0.3 115 66-188 38-155 (615)
469 PF10647 Gmad1: Lipoprotein Lp 69.2 48 0.001 25.2 17.5 66 20-92 25-93 (253)
470 COG3823 Glutamine cyclotransfe 68.6 44 0.00096 24.6 14.3 68 29-100 55-125 (262)
471 KOG1898 Splicing factor 3b, su 66.7 1.1E+02 0.0024 28.5 15.9 75 154-248 939-1013(1205)
472 COG4257 Vgb Streptogramin lyas 66.3 59 0.0013 25.1 17.5 198 19-240 62-263 (353)
473 KOG1900 Nuclear pore complex, 65.9 24 0.00052 33.2 6.4 70 20-96 180-274 (1311)
474 PF13449 Phytase-like: Esteras 65.2 46 0.001 26.4 7.5 62 20-84 86-166 (326)
475 PF12768 Rax2: Cortical protei 64.8 64 0.0014 25.0 9.3 76 17-93 35-122 (281)
476 PHA02790 Kelch-like protein; P 64.8 87 0.0019 26.5 13.7 68 29-100 318-390 (480)
477 PF03088 Str_synth: Strictosid 63.2 16 0.00034 22.6 3.6 39 227-267 33-71 (89)
478 KOG3611 Semaphorins [Signal tr 63.0 1.2E+02 0.0025 27.4 10.8 79 9-90 399-489 (737)
479 TIGR02608 delta_60_rpt delta-6 62.1 25 0.00054 19.4 4.5 19 20-38 2-20 (55)
480 PF10584 Proteasome_A_N: Prote 61.6 3.5 7.5E-05 18.0 0.4 9 259-267 7-15 (23)
481 COG4880 Secreted protein conta 60.1 99 0.0021 25.6 13.2 55 41-98 407-461 (603)
482 PF14339 DUF4394: Domain of un 59.2 74 0.0016 23.9 10.1 82 13-97 19-106 (236)
483 PF03022 MRJP: Major royal jel 58.5 86 0.0019 24.4 8.8 66 172-245 34-101 (287)
484 PF14727 PHTB1_N: PTHB1 N-term 57.3 1.1E+02 0.0024 25.4 18.5 59 31-94 146-204 (418)
485 TIGR02171 Fb_sc_TIGR02171 Fibr 56.6 1.3E+02 0.0029 27.6 9.1 76 172-265 329-411 (912)
486 KOG4460 Nuclear pore complex, 56.1 1.3E+02 0.0028 25.8 14.6 33 154-188 171-206 (741)
487 KOG2109 WD40 repeat protein [G 55.8 9.8 0.00021 32.7 2.3 76 9-86 306-390 (788)
488 PF07995 GSDH: Glucose / Sorbo 55.8 1E+02 0.0022 24.5 9.5 76 10-88 245-329 (331)
489 KOG1897 Damage-specific DNA bi 54.6 1.8E+02 0.004 27.0 17.3 74 23-96 118-200 (1096)
490 KOG1916 Nuclear protein, conta 54.2 36 0.00077 31.0 5.3 48 13-60 219-282 (1283)
491 PF12657 TFIIIC_delta: Transcr 53.8 30 0.00065 24.4 4.2 31 19-49 86-122 (173)
492 PF12768 Rax2: Cortical protei 53.4 1.1E+02 0.0023 23.9 13.2 56 39-98 15-76 (281)
493 PF08954 DUF1900: Domain of un 52.5 71 0.0015 21.6 6.1 55 18-72 10-66 (136)
494 PF02333 Phytase: Phytase; In 51.8 1.3E+02 0.0029 24.6 16.5 70 20-94 157-237 (381)
495 TIGR03054 photo_alph_chp1 puta 49.0 81 0.0018 21.3 6.3 70 164-245 43-118 (135)
496 PF05935 Arylsulfotrans: Aryls 48.0 1.7E+02 0.0037 24.8 14.4 179 24-237 153-365 (477)
497 KOG4659 Uncharacterized conser 47.7 2.8E+02 0.0061 27.1 12.2 16 22-37 596-611 (1899)
498 PF10214 Rrn6: RNA polymerase 47.4 2.2E+02 0.0049 25.9 22.5 165 13-182 73-278 (765)
499 PF14870 PSII_BNR: Photosynthe 47.3 1.4E+02 0.003 23.5 17.8 30 63-94 145-174 (302)
500 PLN02153 epithiospecifier prot 46.8 1.5E+02 0.0032 23.7 16.7 25 29-53 85-114 (341)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-40 Score=245.05 Aligned_cols=230 Identities=19% Similarity=0.305 Sum_probs=197.9
Q ss_pred CcccccccccccEEEEEEeCC--CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
..+++|+||.+.|.++.|+|. +..||||+.||++++|++.+..++..+.+|. ..|..++|+| +|++|+|++.|.
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~--~RVs~VafHP--sG~~L~TasfD~ 283 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL--ARVSRVAFHP--SGKFLGTASFDS 283 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch--hhheeeeecC--CCceeeeccccc
Confidence 678999999999999999995 6699999999999999999999999999999 6699999999 999999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCC---ceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
+-++||++++.. +...+++.... +++.+.+.+..+.+++. ..+||+++++.+. .+.+|.. ++|+|+
T Consensus 284 tWRlWD~~tk~E----lL~QEGHs~~v--~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im-~L~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 284 TWRLWDLETKSE----LLLQEGHSKGV--FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM-FLAGHIKEILSVAFSPN 356 (459)
T ss_pred chhhcccccchh----hHhhccccccc--ceeEecCCCceeeccCccchhheeecccCcEEE-EecccccceeeEeECCC
Confidence 999999999864 33555665554 34555666666666654 4679999999887 5666877 999999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
| +.++ +|+.|++++|||++....++++. +|.+ .|..+. |+|. .|. +|+|++.|++++||..+
T Consensus 357 G-y~lA-Tgs~Dnt~kVWDLR~r~~ly~ip--------AH~n----lVS~Vk-~~p~--~g~-fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 357 G-YHLA-TGSSDNTCKVWDLRMRSELYTIP--------AHSN----LVSQVK-YSPQ--EGY-FLVTASYDNTVKIWSTR 418 (459)
T ss_pred c-eEEe-ecCCCCcEEEeeecccccceecc--------cccc----hhhheE-eccc--CCe-EEEEcccCcceeeecCC
Confidence 9 4555 78889999999999999999998 8854 677777 9994 455 99999999999999999
Q ss_pred CCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+ ..+++.+.||.+.|.++..++|+..|.
T Consensus 419 ~-~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 419 T-WSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred C-cccchhhcCCccceEEEEeccCCceEE
Confidence 9 999999999999999999999998764
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-38 Score=230.87 Aligned_cols=241 Identities=18% Similarity=0.299 Sum_probs=193.1
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
++-..+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|. ..|.+++|+| ||..|++|+.||+|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~--~WVlcvawsP--Dgk~iASG~~dg~I 181 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK--NWVLCVAWSP--DGKKIASGSKDGSI 181 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc--cEEEEEEECC--CcchhhccccCCeE
Confidence 5677899999999999999999999999999999999999999999999999 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCc------cceecCCCCceEEEeccCceeeeccCCCCC--eEecCCC
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY------ANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG 160 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~ 160 (270)
++||.++++... ..+.++...+..++...-.. .....-.+...+||+..+..+. .+.+|.. .|+...|
T Consensus 182 ~lwdpktg~~~g---~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~-~lsgHT~~VTCvrwGG 257 (480)
T KOG0271|consen 182 RLWDPKTGQQIG---RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR-TLSGHTASVTCVRWGG 257 (480)
T ss_pred EEecCCCCCccc---ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE-EeccCccceEEEEEcC
Confidence 999999998654 45667777766555443211 1222335667889988776665 6778888 5555666
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCc------------------------------------------------
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS------------------------------------------------ 192 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------ 192 (270)
+.++. +|+.|++|++|+...|.+..+++...
T Consensus 258 ~gliy-SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 258 EGLIY-SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred CceEE-ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 65554 89999999999988876655554110
Q ss_pred -----------------------CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 193 -----------------------CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 193 -----------------------~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
.....|| ...+..+. |+| |++ ++|+++.|..|++||.++ ++.+.+|.
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgH----q~lVn~V~-fSP---d~r-~IASaSFDkSVkLW~g~t-Gk~lasfR 406 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGH----QALVNHVS-FSP---DGR-YIASASFDKSVKLWDGRT-GKFLASFR 406 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhch----hhheeeEE-ECC---Ccc-EEEEeecccceeeeeCCC-cchhhhhh
Confidence 0011233 23567777 999 566 999999999999999999 99999999
Q ss_pred ccCCCeeEEEeecCCCcee
Q 024245 250 VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 250 ~~~~~v~~~~~s~~g~~ls 268 (270)
+|-++|+.++|+.|.++|-
T Consensus 407 GHv~~VYqvawsaDsRLlV 425 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSRLLV 425 (480)
T ss_pred hccceeEEEEeccCccEEE
Confidence 9999999999999988764
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=228.16 Aligned_cols=231 Identities=17% Similarity=0.233 Sum_probs=188.6
Q ss_pred CcccccccccccEEEEEEeC-----CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 9 DPVAVLRGHRASVTDVCFHQ-----TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
+..+.|.||+..|++++|.| ..++||+++.||.|+|||+..+.++..+.+|. .+|+|+.|-- + .+|++++
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT--~~VTCvrwGG--~-gliySgS 265 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT--ASVTCVRWGG--E-GLIYSGS 265 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc--cceEEEEEcC--C-ceEEecC
Confidence 45678999999999999987 56799999999999999999999999999999 6699999975 4 7999999
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeecc-------------CC------------------------ccce
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-------------EP------------------------YANA 126 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~------------------------~~~~ 126 (270)
.|++|++|+...|.+.+ .+.++...+..+++.- .. ....
T Consensus 266 ~DrtIkvw~a~dG~~~r----~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCR----ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred CCceEEEEEccchhHHH----hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 99999999999987755 5556655554444431 11 0111
Q ss_pred ecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC
Q 024245 127 KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK 202 (270)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 202 (270)
..++....+|+....+.....+.+|+. +.||||++++ ++++.|.+|++||.++|+.+.+|. ||.
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~I--ASaSFDkSVkLW~g~tGk~lasfR--------GHv-- 409 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYI--ASASFDKSVKLWDGRTGKFLASFR--------GHV-- 409 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEE--EEeecccceeeeeCCCcchhhhhh--------hcc--
Confidence 222333344665555556667788888 8999999744 478899999999999999999999 884
Q ss_pred CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 203 ~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+.++.++ |+. |.+ +|++|+.|.++++||+++ .+....+.+|.+.|.++.|+|||..+.
T Consensus 410 --~~VYqva-wsa---DsR-LlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 410 --AAVYQVA-WSA---DSR-LLVSGSKDSTLKVWDVRT-KKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred --ceeEEEE-ecc---Ccc-EEEEcCCCceEEEEEeee-eeecccCCCCCceEEEEEecCCCceee
Confidence 4788888 997 455 999999999999999999 899999999999999999999998765
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=224.44 Aligned_cols=224 Identities=18% Similarity=0.263 Sum_probs=189.2
Q ss_pred ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
-|-+.+|..+.|+.++..|+||+.+|.++||+..+...+++|.+|. +.|.++.|+|..++..++|++.||++++|++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~--~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT--SRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc--cceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 3557899999999999999999999999999999999999999999 66999999995335689999999999999999
Q ss_pred CCccCCCCccceecccceEEEEeeccCCccceecCCCCceE---EEeccCceeeeccCCCCC----eEecCCCCeEEEEe
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC---YEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA 167 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~ 167 (270)
+.. ++..+.++...+ ..+.+++.+.++.+++.+.. ||+.++..+. ..+||.. ++|.+||. ++++
T Consensus 250 ~e~----~l~~l~gH~~RV--s~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~DGS--L~~t 320 (459)
T KOG0272|consen 250 QET----PLQDLEGHLARV--SRVAFHPSGKFLGTASFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQPDGS--LAAT 320 (459)
T ss_pred CCc----chhhhhcchhhh--eeeeecCCCceeeecccccchhhcccccchhhH-hhcccccccceeEecCCCc--eeec
Confidence 874 455777776544 35566777777777777665 5666555443 5677777 99999997 4558
Q ss_pred cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee
Q 024245 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~ 247 (270)
|+.|..-+|||+++++++..+. ||. ..+.++. |+| +|. .||||+.|++++|||++. ..++.+
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~--------gH~----k~I~~V~-fsP---NGy-~lATgs~Dnt~kVWDLR~-r~~ly~ 382 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLA--------GHI----KEILSVA-FSP---NGY-HLATGSSDNTCKVWDLRM-RSELYT 382 (459)
T ss_pred cCccchhheeecccCcEEEEec--------ccc----cceeeEe-ECC---Cce-EEeecCCCCcEEEeeecc-ccccee
Confidence 9999999999999999999999 784 4688888 999 576 999999999999999999 788999
Q ss_pred eeccCCCeeEEEeec-CCCce
Q 024245 248 MKVHLEPGLECSMWR-NPITM 267 (270)
Q Consensus 248 ~~~~~~~v~~~~~s~-~g~~l 267 (270)
+.+|.+-|+.+.|+| .|.+|
T Consensus 383 ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 383 IPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred cccccchhhheEecccCCeEE
Confidence 999999999999999 55555
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1e-34 Score=206.14 Aligned_cols=234 Identities=13% Similarity=0.214 Sum_probs=190.0
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
..++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+...++.++... ..|...+|+| .|++++.|+.|+...
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s--~WVMtCA~sP--Sg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS--SWVMTCAYSP--SGNFVACGGLDNKCS 122 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc--eeEEEEEECC--CCCeEEecCcCceeE
Confidence 458899999999999999999999999999999999999988888888877 6799999999 999999999999999
Q ss_pred EEEccCCcc--CCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecC-CCCe
Q 024245 90 CWDIENGGL--SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA-EGPK 162 (270)
Q Consensus 90 ~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~-~~~~ 162 (270)
||++.+... ..+....+.++.....+..+..............-.+||+++++... .+.+|.. ++++| +++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~-~f~GH~gDV~slsl~p~~~n- 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQ-VFHGHTGDVMSLSLSPSDGN- 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEE-EecCCcccEEEEecCCCCCC-
Confidence 999986522 11223345666665555555554444444445556779999998766 6668888 78889 555
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
.++ +|+.|+..+|||+|.+.++++|. ||. .-+.++. |.|+ |. -+++|++|++.++||++. .
T Consensus 201 tFv-Sg~cD~~aklWD~R~~~c~qtF~--------ghe----sDINsv~-ffP~---G~-afatGSDD~tcRlyDlRa-D 261 (343)
T KOG0286|consen 201 TFV-SGGCDKSAKLWDVRSGQCVQTFE--------GHE----SDINSVR-FFPS---GD-AFATGSDDATCRLYDLRA-D 261 (343)
T ss_pred eEE-ecccccceeeeeccCcceeEeec--------ccc----cccceEE-EccC---CC-eeeecCCCceeEEEeecC-C
Confidence 444 67789999999999999999999 784 4677787 9995 54 899999999999999999 7
Q ss_pred cceeeeecc--CCCeeEEEeecCCCcee
Q 024245 243 IPLTAMKVH--LEPGLECSMWRNPITMS 268 (270)
Q Consensus 243 ~~~~~~~~~--~~~v~~~~~s~~g~~ls 268 (270)
+.+..+... ..+|++++||..|++|=
T Consensus 262 ~~~a~ys~~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 262 QELAVYSHDSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred cEEeeeccCcccCCceeEEEcccccEEE
Confidence 777777632 35899999999999873
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-34 Score=203.89 Aligned_cols=194 Identities=22% Similarity=0.338 Sum_probs=164.1
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.+++.|+||...|..+..+++|.+.++++.|+++++||+.+++..+.|.+|.. .|.+++|++ +...+++|+.|++|
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~--dVlsva~s~--dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK--DVLSVAFST--DNRQIVSGSRDKTI 129 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC--ceEEEEecC--CCceeecCCCccee
Confidence 57889999999999999999999999999999999999999999999999994 499999999 98999999999999
Q ss_pred EEEEccCCccCCCCccceeccc--ceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNS--YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 166 (270)
++|++..... .++.... ....+ +.|+|+....+++
T Consensus 130 klwnt~g~ck-----~t~~~~~~~~WVsc--------------------------------------vrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 130 KLWNTLGVCK-----YTIHEDSHREWVSC--------------------------------------VRFSPNESNPIIV 166 (315)
T ss_pred eeeeecccEE-----EEEecCCCcCcEEE--------------------------------------EEEcCCCCCcEEE
Confidence 9999876532 2222221 11111 5689986555556
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
+++.|++|++||+++.+....+. || .+.+..+. ++|+ |. ++++|+.||.+.+||++. ++.+.
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~--------gh----~~~v~t~~-vSpD---Gs-lcasGgkdg~~~LwdL~~-~k~ly 228 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFI--------GH----SGYVNTVT-VSPD---GS-LCASGGKDGEAMLWDLNE-GKNLY 228 (315)
T ss_pred EccCCceEEEEccCCcchhhccc--------cc----cccEEEEE-ECCC---CC-EEecCCCCceEEEEEccC-CceeE
Confidence 88899999999999988888888 77 45788887 9995 54 999999999999999999 78788
Q ss_pred eeeccCCCeeEEEeecCCCcee
Q 024245 247 AMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+. |...|.+++|+|+...|.
T Consensus 229 sl~-a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 229 SLE-AFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred ecc-CCCeEeeEEecCCceeEe
Confidence 776 688999999999988775
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.7e-35 Score=230.48 Aligned_cols=193 Identities=19% Similarity=0.286 Sum_probs=168.5
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
..+++.||.++|..++|+|+.++|+++|+|+++++|.+.+..++-.+.+|. .+|..+.|+| -|-+++|++.|++.+
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~--~PVwdV~F~P--~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL--APVWDVQFAP--RGYYFATASHDQTAR 518 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC--cceeeEEecC--CceEEEecCCCceee
Confidence 456799999999999999999999999999999999999999999999998 7799999999 889999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 169 (270)
+|........+ .+.++-....+ +.|+|+..++. +|+
T Consensus 519 LWs~d~~~PlR----ifaghlsDV~c--------------------------------------v~FHPNs~Y~a--TGS 554 (707)
T KOG0263|consen 519 LWSTDHNKPLR----IFAGHLSDVDC--------------------------------------VSFHPNSNYVA--TGS 554 (707)
T ss_pred eeecccCCchh----hhcccccccce--------------------------------------EEECCcccccc--cCC
Confidence 99988764333 22222211111 56999997553 899
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
.|.+|++||+.+|..++.|. || .+.+.+++ |+| +|+ +|++|++||.|.+||+.+ +.++..+.
T Consensus 555 sD~tVRlWDv~~G~~VRiF~--------GH----~~~V~al~-~Sp---~Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l~ 616 (707)
T KOG0263|consen 555 SDRTVRLWDVSTGNSVRIFT--------GH----KGPVTALA-FSP---CGR-YLASGDEDGLIKIWDLAN-GSLVKQLK 616 (707)
T ss_pred CCceEEEEEcCCCcEEEEec--------CC----CCceEEEE-EcC---CCc-eEeecccCCcEEEEEcCC-Ccchhhhh
Confidence 99999999999999999998 88 55788888 999 577 999999999999999999 89999999
Q ss_pred ccCCCeeEEEeecCCCcee
Q 024245 250 VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 250 ~~~~~v~~~~~s~~g~~ls 268 (270)
+|++.|.++.||.||.+|.
T Consensus 617 ~Ht~ti~SlsFS~dg~vLa 635 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLA 635 (707)
T ss_pred cccCceeEEEEecCCCEEE
Confidence 9999999999999998874
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.9e-33 Score=192.23 Aligned_cols=227 Identities=15% Similarity=0.251 Sum_probs=175.5
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
.|.|+.++.+|+..|+++.|..+|+++++|++||+++|||++...+.+.+... ++|+++..+| +...|++|..+|
T Consensus 72 np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhp--nQteLis~dqsg 146 (311)
T KOG0315|consen 72 NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHP--NQTELISGDQSG 146 (311)
T ss_pred CCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecC--CcceEEeecCCC
Confidence 45799999999999999999999999999999999999999987777666543 7799999999 888999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCc-----eeeeccCCCCC----eEe
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGE-----TVDTDSLCDSK----DDV 156 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~~ 156 (270)
.|++||+....+..+++ +........+.+.+...... +...+.-..|++-... .....++.|.. +.+
T Consensus 147 ~irvWDl~~~~c~~~li---Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~l 223 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELI---PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLL 223 (311)
T ss_pred cEEEEEccCCccccccC---CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEE
Confidence 99999999886544222 22223444455554443333 2334455567776543 23345667776 789
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
|||++++. +++.|.+++||+.... +....++ +| ...++..+ |+. ||+ ||+||+.|+.+++
T Consensus 224 SPd~k~la--t~ssdktv~iwn~~~~~kle~~l~--------gh----~rWvWdc~-FS~---dg~-YlvTassd~~~rl 284 (311)
T KOG0315|consen 224 SPDVKYLA--TCSSDKTVKIWNTDDFFKLELVLT--------GH----QRWVWDCA-FSA---DGE-YLVTASSDHTARL 284 (311)
T ss_pred CCCCcEEE--eecCCceEEEEecCCceeeEEEee--------cC----CceEEeee-ecc---Ccc-EEEecCCCCceee
Confidence 99998664 4556999999999876 4444455 56 46889988 997 566 9999999999999
Q ss_pred EEcCCCCcceeeeeccCCCeeEEEee
Q 024245 236 WDIRNPGIPLTAMKVHLEPGLECSMW 261 (270)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~v~~~~~s 261 (270)
||+.. ++.+..+.+|..+..+++..
T Consensus 285 W~~~~-~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 285 WDLSA-GKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ccccc-CceeeecCCcccccEEEEee
Confidence 99999 88899999998888887764
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-32 Score=205.52 Aligned_cols=223 Identities=17% Similarity=0.292 Sum_probs=175.1
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
...|++++|+.+|.+||+|+.||.+++|+.. |..+.++..|. ++|.++.|+. .|++|++++-|+++.+||..++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hk--gPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHK--GPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccC--CceEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence 3679999999999999999999999999966 78888888888 7799999999 99999999999999999999987
Q ss_pred cCCCCccceecccceEEEEeeccCCccceecCCC--CceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE--PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d 171 (270)
... .+.++..+ .+.+.+.....+..... ...++.+..... ..++.+|.+ +.|.|.|. +|+ ++++|
T Consensus 310 ~~q--~f~~~s~~----~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P-~~t~~GH~g~V~alk~n~tg~-LLa-S~SdD 380 (524)
T KOG0273|consen 310 VKQ--QFEFHSAP----ALDVDWQSNDEFATSSTDGCIHVCKVGEDRP-VKTFIGHHGEVNALKWNPTGS-LLA-SCSDD 380 (524)
T ss_pred EEE--eeeeccCC----ccceEEecCceEeecCCCceEEEEEecCCCc-ceeeecccCceEEEEECCCCc-eEE-EecCC
Confidence 654 33333322 23334444444433333 344455544444 445666777 89999996 343 78889
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC-----CCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-----QGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~-----~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
++++||.+........+. +|.. .++.+. |+|+++ +....+++++.|++|++||+.. +.++.
T Consensus 381 ~TlkiWs~~~~~~~~~l~--------~Hsk----ei~t~~-wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~ 446 (524)
T KOG0273|consen 381 GTLKIWSMGQSNSVHDLQ--------AHSK----EIYTIK-WSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIH 446 (524)
T ss_pred CeeEeeecCCCcchhhhh--------hhcc----ceeeEe-ecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeE
Confidence 999999999888888888 6743 466666 887642 1223899999999999999999 99999
Q ss_pred eeeccCCCeeEEEeecCCCcee
Q 024245 247 AMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+|..|..+|.+++|+|+|+|+.
T Consensus 447 ~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 447 TLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred eeccCCCceEEEEecCCCcEEE
Confidence 9999999999999999999975
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-32 Score=191.46 Aligned_cols=197 Identities=18% Similarity=0.244 Sum_probs=164.1
Q ss_pred CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCC-----CceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
.+..++++|++.|+.++..+. ...++++++|..+.+|++.. |..++.+.+|.+. |..+..++ +|++.+++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~--v~dv~~s~--dg~~alS~ 81 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF--VSDVVLSS--DGNFALSA 81 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceE--ecceEEcc--CCceEEec
Confidence 456789999999999999985 56899999999999999864 5678899999955 99999999 99999999
Q ss_pred eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCe
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 162 (270)
+.|+++++||+.+++..+ .+.++...... ++|++|.+.
T Consensus 82 swD~~lrlWDl~~g~~t~----~f~GH~~dVls--------------------------------------va~s~dn~q 119 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTR----RFVGHTKDVLS--------------------------------------VAFSTDNRQ 119 (315)
T ss_pred cccceEEEEEecCCcEEE----EEEecCCceEE--------------------------------------EEecCCCce
Confidence 999999999999985433 44444333221 568899886
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
++ +|+.|.+|++|+.- +.+.+++.. +. .+..+.++. |+|++. .. +|++++.|++|++||+++ .
T Consensus 120 iv--SGSrDkTiklwnt~-g~ck~t~~~--------~~--~~~WVscvr-fsP~~~-~p-~Ivs~s~DktvKvWnl~~-~ 182 (315)
T KOG0279|consen 120 IV--SGSRDKTIKLWNTL-GVCKYTIHE--------DS--HREWVSCVR-FSPNES-NP-IIVSASWDKTVKVWNLRN-C 182 (315)
T ss_pred ee--cCCCcceeeeeeec-ccEEEEEec--------CC--CcCcEEEEE-EcCCCC-Cc-EEEEccCCceEEEEccCC-c
Confidence 65 89999999999987 677777762 21 267899998 999842 23 999999999999999999 8
Q ss_pred cceeeeeccCCCeeEEEeecCCCcee
Q 024245 243 IPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+....+.+|++.++.+++||||....
T Consensus 183 ~l~~~~~gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 183 QLRTTFIGHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred chhhccccccccEEEEEECCCCCEEe
Confidence 89999999999999999999998754
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=195.59 Aligned_cols=232 Identities=19% Similarity=0.240 Sum_probs=191.4
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
|-++.+.++||.+.|.|+++.|..+++++|+.|++|+|||+.+++...++.+|. ..|..+++++ -..+|++++.|+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi--~~vr~vavS~--rHpYlFs~gedk 215 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI--ETVRGVAVSK--RHPYLFSAGEDK 215 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh--heeeeeeecc--cCceEEEecCCC
Confidence 446788999999999999999999999999999999999999999999999998 6699999999 667999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP 161 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~ 161 (270)
.|+.||++.++.++ ...++-....+++....-... .....+..++||+++...+. .+.||.. +.+.|...
T Consensus 216 ~VKCwDLe~nkvIR----~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~-~l~GH~~~V~~V~~~~~dp 290 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIR----HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH-VLSGHTNPVASVMCQPTDP 290 (460)
T ss_pred eeEEEechhhhhHH----HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE-EecCCCCcceeEEeecCCC
Confidence 99999999987655 556665555555554333322 22334556789999887665 6778887 66777666
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
.++ +|+.|++|++||++.|+...++. .| ...+.+++ .+|.+. .+|+++.| .|+-|++..
T Consensus 291 qvi--t~S~D~tvrlWDl~agkt~~tlt--------~h----kksvral~-lhP~e~----~fASas~d-nik~w~~p~- 349 (460)
T KOG0285|consen 291 QVI--TGSHDSTVRLWDLRAGKTMITLT--------HH----KKSVRALC-LHPKEN----LFASASPD-NIKQWKLPE- 349 (460)
T ss_pred ceE--EecCCceEEEeeeccCceeEeee--------cc----cceeeEEe-cCCchh----hhhccCCc-cceeccCCc-
Confidence 554 78999999999999999888887 45 45677887 999644 78888776 799999999
Q ss_pred CcceeeeeccCCCeeEEEeecCCCcee
Q 024245 242 GIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+..+..+.+|..-|++++.+.||.+++
T Consensus 350 g~f~~nlsgh~~iintl~~nsD~v~~~ 376 (460)
T KOG0285|consen 350 GEFLQNLSGHNAIINTLSVNSDGVLVS 376 (460)
T ss_pred cchhhccccccceeeeeeeccCceEEE
Confidence 888888999999999999999999887
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-31 Score=190.73 Aligned_cols=243 Identities=16% Similarity=0.233 Sum_probs=179.2
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCC-CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.|+-.+.||++.|+.+.|+|+|.+||+|+.|..|.+|++. ..+....+++|. +.|..+.|.+ +++.|++++.|++
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs--gAVM~l~~~~--d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS--GAVMELHGMR--DGSHILSCGTDKT 113 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecccc--ceeEeeeecc--CCCEEEEecCCce
Confidence 3566788999999999999999999999999999999965 346677788998 6699999999 9999999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeE
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKY 163 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~ 163 (270)
|+.||+++++..+ ..+.+......+.+.... ........+...+||++..+.+.......+. +.|..++...
T Consensus 114 v~~wD~~tG~~~r----k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 114 VRGWDAETGKRIR----KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred EEEEecccceeee----hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence 9999999998755 555555444433322211 1223334556677999877766644332222 7788887766
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcC--------------------------------------CCCCCcccCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSC--------------------------------------GGSPNFSSKGRG 205 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------------------------------~~~~~h~~~~~~ 205 (270)
+ +|.-|+.|++||++.+...+.+....- ....||......
T Consensus 190 ~--sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 190 I--SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred e--eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence 5 677889999999988877777761100 000122222222
Q ss_pred eeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 206 ~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
....+. |+|+ +. .+.+|+.|..+++||... ...+..+.||.+.|++++|+|....|
T Consensus 268 nlL~cs-wsp~---~~-~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsvn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 268 NLLKCS-WSPN---GT-KITAGSADRFVYVWDTTS-RRILYKLPGHYGSVNEVDFHPTEPII 323 (338)
T ss_pred hcceee-ccCC---CC-ccccccccceEEEeeccc-ccEEEEcCCcceeEEEeeecCCCcEE
Confidence 334454 8874 44 899999999999999988 88999999999999999999987654
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=185.33 Aligned_cols=229 Identities=15% Similarity=0.178 Sum_probs=190.0
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC------ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
+.+.-....|..++|+|.|+++|+|+-|+...||++.+. ...+.+.+|. +.+.++.|.+ | +.|+|++.|
T Consensus 91 haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt--gylScC~f~d--D-~~ilT~SGD 165 (343)
T KOG0286|consen 91 HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT--GYLSCCRFLD--D-NHILTGSGD 165 (343)
T ss_pred eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc--ceeEEEEEcC--C-CceEecCCC
Confidence 334445678999999999999999999999999999854 3456788898 6799999988 7 889999999
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCcccee--cCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK--QANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
.+..+||+++++... .+.++...+..+++.+.....++ .......+||++.+..++ .+.+|+. ++|.|+
T Consensus 166 ~TCalWDie~g~~~~----~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~q-tF~ghesDINsv~ffP~ 240 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQ----VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQ-TFEGHESDINSVRFFPS 240 (343)
T ss_pred ceEEEEEcccceEEE----EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeE-eecccccccceEEEccC
Confidence 999999999997755 78888888888887775333332 234456789999996554 7888887 999999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
|..+ ++|++|+++++||+|..+.+..+.. ......+++++ |+.+ |+ +|++|..|.++.+||.-
T Consensus 241 G~af--atGSDD~tcRlyDlRaD~~~a~ys~----------~~~~~gitSv~-FS~S---GR-lLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 241 GDAF--ATGSDDATCRLYDLRADQELAVYSH----------DSIICGITSVA-FSKS---GR-LLFAGYDDFTCNVWDTL 303 (343)
T ss_pred CCee--eecCCCceeEEEeecCCcEEeeecc----------CcccCCceeEE-Eccc---cc-EEEeeecCCceeEeecc
Confidence 9754 3899999999999999999888873 22456788888 9984 66 99999999999999998
Q ss_pred CCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
. ++.+..+.+|...|.++..+|||.-+.
T Consensus 304 k-~e~vg~L~GHeNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 304 K-GERVGVLAGHENRVSCLGVSPDGMAVA 331 (343)
T ss_pred c-cceEEEeeccCCeeEEEEECCCCcEEE
Confidence 8 889999999999999999999998765
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=195.01 Aligned_cols=230 Identities=20% Similarity=0.288 Sum_probs=184.5
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
.++++.|+||+++|..++|+..|++|++++.|-.+++||..+ .++++.+.+|. ..|.++.|-| .|+++++++.|.
T Consensus 140 g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~--h~vS~V~f~P--~gd~ilS~srD~ 215 (406)
T KOG0295|consen 140 GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE--HGVSSVFFLP--LGDHILSCSRDN 215 (406)
T ss_pred hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcc--cceeeEEEEe--cCCeeeeccccc
Confidence 357889999999999999999999999999999999999987 57888888888 5599999999 889999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCC---CceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
+|+.|++.++.++. ++.++......+.+... +..++..+ ....|-+.+.+... .+.+|+. ++|.|.
T Consensus 216 tik~We~~tg~cv~----t~~~h~ewvr~v~v~~D--Gti~As~s~dqtl~vW~~~t~~~k~-~lR~hEh~vEci~wap~ 288 (406)
T KOG0295|consen 216 TIKAWECDTGYCVK----TFPGHSEWVRMVRVNQD--GTIIASCSNDQTLRVWVVATKQCKA-ELREHEHPVECIAWAPE 288 (406)
T ss_pred ceeEEecccceeEE----eccCchHhEEEEEecCC--eeEEEecCCCceEEEEEeccchhhh-hhhccccceEEEEeccc
Confidence 99999999997755 77777777666665543 33333333 34456666653322 3444444 444432
Q ss_pred --------------CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245 160 --------------GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (270)
Q Consensus 160 --------------~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (270)
+..++ .+++.|++|++||+.++.++.++. ||.+ .+..++ |+| .|+ ||+
T Consensus 289 ~~~~~i~~at~~~~~~~~l-~s~SrDktIk~wdv~tg~cL~tL~--------ghdn----wVr~~a-f~p---~Gk-yi~ 350 (406)
T KOG0295|consen 289 SSYPSISEATGSTNGGQVL-GSGSRDKTIKIWDVSTGMCLFTLV--------GHDN----WVRGVA-FSP---GGK-YIL 350 (406)
T ss_pred ccCcchhhccCCCCCccEE-EeecccceEEEEeccCCeEEEEEe--------cccc----eeeeeE-EcC---CCe-EEE
Confidence 22233 479999999999999999999999 8855 566676 999 466 999
Q ss_pred EecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 226 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
++.+|+++++||+++ .+++..+..|..-|+++.|..+-.++
T Consensus 351 ScaDDktlrvwdl~~-~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 351 SCADDKTLRVWDLKN-LQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred EEecCCcEEEEEecc-ceeeeccCCCcceeEEEecCCCCceE
Confidence 999999999999999 99999999999999999999876654
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=4.6e-30 Score=178.79 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=176.3
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
..+.++++...+.|+.+...|+++.||+|+.. .|++||+++++ ++.++.+|. ..|.++.|.. +|+.+++|++|
T Consensus 30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~--kNVtaVgF~~--dgrWMyTgseD 104 (311)
T KOG0315|consen 30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHT--KNVTAVGFQC--DGRWMYTGSED 104 (311)
T ss_pred CeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccC--CceEEEEEee--cCeEEEecCCC
Confidence 36777888778899999999999999999876 59999998864 688899998 5599999999 99999999999
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCceeeeccCCCCC----eEecCCC
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG 160 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~ 160 (270)
|+++|||++...+.+ .+... .....+-+..+..... ....+.+.+||+............... +.+.|||
T Consensus 105 gt~kIWdlR~~~~qR--~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg 179 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQR--NYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG 179 (311)
T ss_pred ceEEEEeccCcccch--hccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC
Confidence 999999999866544 22222 2223333333333333 333567788999877544433333222 8899999
Q ss_pred CeEEEEecCCCceEEEEeCCCcc------eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAE------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~ 234 (270)
..+.+ +...|..++|++-..+ ++.+++ .| .+.++.+. ++|+ ++ +|++++.|.+++
T Consensus 180 sml~a--~nnkG~cyvW~l~~~~~~s~l~P~~k~~--------ah----~~~il~C~-lSPd---~k-~lat~ssdktv~ 240 (311)
T KOG0315|consen 180 SMLAA--ANNKGNCYVWRLLNHQTASELEPVHKFQ--------AH----NGHILRCL-LSPD---VK-YLATCSSDKTVK 240 (311)
T ss_pred cEEEE--ecCCccEEEEEccCCCccccceEhhhee--------cc----cceEEEEE-ECCC---Cc-EEEeecCCceEE
Confidence 87765 4457999999987654 333444 45 45677777 9995 44 999999999999
Q ss_pred EEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 235 VWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
||+..+.-+....+++|...++.++||.||.||-
T Consensus 241 iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Ylv 274 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLV 274 (311)
T ss_pred EEecCCceeeEEEeecCCceEEeeeeccCccEEE
Confidence 9999985477778899999999999999999984
No 16
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9.6e-31 Score=180.87 Aligned_cols=235 Identities=14% Similarity=0.187 Sum_probs=192.2
Q ss_pred CCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 5 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
|....+++++.||...|..++.+.|...+++|+.|..+.+||+++|+..+.+.+|. +.|+.++|+. +...+++|+.
T Consensus 46 p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~--aqVNtV~fNe--esSVv~Sgsf 121 (307)
T KOG0316|consen 46 PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHL--AQVNTVRFNE--ESSVVASGSF 121 (307)
T ss_pred ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccc--ceeeEEEecC--cceEEEeccc
Confidence 44456899999999999999999999999999999999999999999999999999 5599999999 8889999999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-eEecCCCCeE
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKY 163 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~ 163 (270)
|.++++||-++... +|+..+.........+.+..+... .....+..+.++++.+......+..... ++|+++++..
T Consensus 122 D~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~~heIv-aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~ 198 (307)
T KOG0316|consen 122 DSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVAEHEIV-AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCS 198 (307)
T ss_pred cceeEEEEcccCCC--CccchhhhhcCceeEEEecccEEE-eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEE
Confidence 99999999998765 557777766666666666554332 3344556788999988776655544444 9999999988
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
++ ++.|+++++.|-.+|+++..++ ||.+. ..-...+ ++..+ ..+++|++||.|++||+.. ..
T Consensus 199 La--~~l~stlrLlDk~tGklL~sYk--------Ghkn~--eykldc~-l~qsd----thV~sgSEDG~Vy~wdLvd-~~ 260 (307)
T KOG0316|consen 199 LA--SSLDSTLRLLDKETGKLLKSYK--------GHKNM--EYKLDCC-LNQSD----THVFSGSEDGKVYFWDLVD-ET 260 (307)
T ss_pred EE--eeccceeeecccchhHHHHHhc--------ccccc--eeeeeee-ecccc----eeEEeccCCceEEEEEecc-ce
Confidence 75 6679999999999999999999 88653 2333333 55432 2899999999999999998 88
Q ss_pred ceeeeeccCCC-eeEEEeecCC
Q 024245 244 PLTAMKVHLEP-GLECSMWRNP 264 (270)
Q Consensus 244 ~~~~~~~~~~~-v~~~~~s~~g 264 (270)
.+..+..+... |.+++++|.-
T Consensus 261 ~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 261 QISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred eeeeeccCCceeEEeeecccCc
Confidence 88888888777 7899999853
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=3.3e-32 Score=205.21 Aligned_cols=238 Identities=17% Similarity=0.292 Sum_probs=183.5
Q ss_pred CCCcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
|.+.+.++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|. .+|.+++|++ +|..++|++.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~--k~Vrd~~~s~--~g~~fLS~sf 278 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR--KPVRDASFNN--CGTSFLSASF 278 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch--hhhhhhhccc--cCCeeeeeec
Confidence 5578899999999999999999 899999999999999999876 89999999999 6799999999 9999999999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEE-EEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFC-KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
|+.|++||+++|++.. .++......+ .+.+............+.+..||++.++.+.. +..|-. +.|-++
T Consensus 279 D~~lKlwDtETG~~~~----~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-Yd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLS----RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-YDRHLGAILDITFVDE 353 (503)
T ss_pred ceeeeeeccccceEEE----EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-HHhhhhheeeeEEccC
Confidence 9999999999998754 5544433332 33333322333344455667799999986553 222222 889999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeecc------CcCC--------------------------------CCCCccc
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ------NSCG--------------------------------GSPNFSS 201 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~--------------------------------~~~~h~~ 201 (270)
|++++ +.++|++++||+.+..-++..+.. +++. ...||..
T Consensus 354 g~rFi--ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 354 GRRFI--SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred CceEe--eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 99876 567899999999876543322210 0000 0024532
Q ss_pred CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecC
Q 024245 202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 202 ~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 263 (270)
.+....+. |+| ||+ +|++|+.||.+.+||.++ .+.+..++.|..++..+.|+|.
T Consensus 432 --aGys~~v~-fSp---DG~-~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 432 --AGYSCQVD-FSP---DGR-TLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred --cCceeeEE-EcC---CCC-eEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCC
Confidence 45566777 999 466 999999999999999999 8999999999999999999994
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.8e-30 Score=207.86 Aligned_cols=235 Identities=23% Similarity=0.330 Sum_probs=184.6
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeC-CCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
...+.+.+|...|++++|+|+++++++++.|++|+|||+ ..+..++++.+|. ..|++++|+| .++++++|+.|++
T Consensus 194 ~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~--~~v~~~~f~p--~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 194 NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS--TYVTSVAFSP--DGNLLVSGSDDGT 269 (456)
T ss_pred hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC--CceEEEEecC--CCCEEEEecCCCc
Confidence 367778899999999999999999999999999999999 5568999999999 6699999999 8899999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCcccee-cCCCCceEEEeccCcee-eeccCC--CC-C---eEecCC
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETV-DTDSLC--DS-K---DDVPAE 159 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~--~~-~---~~~s~~ 159 (270)
|++||++++++.+ .+..+......+.+......... ...+...+||+.++... ...+.+ .. . +.|+|+
T Consensus 270 vriWd~~~~~~~~----~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~ 345 (456)
T KOG0266|consen 270 VRIWDVRTGECVR----KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN 345 (456)
T ss_pred EEEEeccCCeEEE----eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC
Confidence 9999999987654 66666555544444333332222 33566778999988842 222222 12 1 899999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
+.+++ ++..|+.+++||++.+.....+. +|.... ....+.. +.+ ++. ++++|+.|+.|++||+.
T Consensus 346 ~~~ll--~~~~d~~~~~w~l~~~~~~~~~~--------~~~~~~-~~~~~~~-~~~---~~~-~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 346 GKYLL--SASLDRTLKLWDLRSGKSVGTYT--------GHSNLV-RCIFSPT-LST---GGK-LIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CcEEE--EecCCCeEEEEEccCCcceeeec--------ccCCcc-eeEeccc-ccC---CCC-eEEEEeCCceEEEEeCC
Confidence 99877 46678999999999999999988 675431 1222332 333 455 99999999999999999
Q ss_pred CCCcceeeeecc-CCCeeEEEeecCCCcee
Q 024245 240 NPGIPLTAMKVH-LEPGLECSMWRNPITMS 268 (270)
Q Consensus 240 ~~~~~~~~~~~~-~~~v~~~~~s~~g~~ls 268 (270)
+ +..+..+.+| ...+..++++|...++.
T Consensus 410 s-~~~~~~l~~h~~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 410 S-GGILQRLEGHSKAAVSDLSSHPTENLIA 438 (456)
T ss_pred c-cchhhhhcCCCCCceeccccCCCcCeee
Confidence 9 8889999999 88999999999887764
No 19
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=5.5e-30 Score=195.36 Aligned_cols=248 Identities=15% Similarity=0.161 Sum_probs=181.1
Q ss_pred CCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe---ecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 6 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
||-+.-.+++.|..-|+|+.|+|||+++++++.||.|.+||-.+++.+..+. +|. +.|.+++|+| |+..++|+
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk--GsIfalsWsP--Ds~~~~T~ 253 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK--GSIFALSWSP--DSTQFLTV 253 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc--ccEEEEEECC--CCceEEEe
Confidence 5667788899999999999999999999999999999999999999999997 676 7799999999 99999999
Q ss_pred eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc-cceecCCCCceEEEeccCceeeeccCCCCC----eEec
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP 157 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s 157 (270)
+.|.+++|||+.+.++.+ .+.+... .....+.+.+... ......++...+++..... +...+.||.. +..+
T Consensus 254 SaDkt~KIWdVs~~slv~--t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVS--TWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVS 329 (603)
T ss_pred cCCceEEEEEeeccceEE--EeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEc
Confidence 999999999999997765 2222111 2222233333322 2334445566677777777 7778889988 8899
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeee-----------eccC----------------------cCC----CCCCcc
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTR-----------LHQN----------------------SCG----GSPNFS 200 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-----------~~~~----------------------~~~----~~~~h~ 200 (270)
|++++++ +|+.||.|.-||..++..-+. +... ..+ ...++.
T Consensus 330 ~d~~~i~--SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 330 PDGKTIY--SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred CCCCEEE--eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 9998766 799999999999876542211 1000 000 000000
Q ss_pred --------------------------------cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC-cceee
Q 024245 201 --------------------------------SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPLTA 247 (270)
Q Consensus 201 --------------------------------~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~-~~~~~ 247 (270)
.+..-...+++ ++|+ +. .++.|+.||.|+||.+.... .....
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA-v~~~---~~-~vaVGG~Dgkvhvysl~g~~l~ee~~ 482 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA-VSPD---GS-EVAVGGQDGKVHVYSLSGDELKEEAK 482 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE-EcCC---CC-EEEEecccceEEEEEecCCcccceee
Confidence 00001123444 7774 44 99999999999999998632 34445
Q ss_pred eeccCCCeeEEEeecCCCcee
Q 024245 248 MKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 248 ~~~~~~~v~~~~~s~~g~~ls 268 (270)
+..|.++|++++||||+.||.
T Consensus 483 ~~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred eecccCCceEEEECCCCcEEE
Confidence 667999999999999999985
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=6.8e-30 Score=202.46 Aligned_cols=229 Identities=18% Similarity=0.274 Sum_probs=180.7
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
-+-..+||...+++++++|||+++|+|++||.|+|||..++-|..+|..|. ..|+++.|+. .++.+++.+.||+|+
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt--s~Vt~v~f~~--~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT--SGVTAVQFTA--RGNVLLSSSLDGTVR 417 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC--CceEEEEEEe--cCCEEEEeecCCeEE
Confidence 345667999999999999999999999999999999999999999999999 6799999999 999999999999999
Q ss_pred EEEccCCccCCCCccceec-ccceEEEEeeccCCccceecCC--CCceEEEeccCceeeeccCCCCC----eEecCCCCe
Q 024245 90 CWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK 162 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~ 162 (270)
.||+...+..+ ++.. .+..+.+++.+.+.....+.+. -.+.+|++.+++.+. .+.||+. ++|+|++..
T Consensus 418 AwDlkRYrNfR----Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD-iLsGHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 418 AWDLKRYRNFR----TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD-ILSGHEGPVSGLSFSPDGSL 492 (893)
T ss_pred eeeecccceee----eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee-hhcCCCCcceeeEEccccCe
Confidence 99999887654 3322 2445566677666655544443 345668999887665 7888988 789999983
Q ss_pred EEEEecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 163 YMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
+ ++++.|.+|++||+-.. ..+.++. ....++.+. |+|+ |+ .|+++..||.|.+||...
T Consensus 493 -L-aS~SWDkTVRiW~if~s~~~vEtl~-------------i~sdvl~vs-frPd---G~-elaVaTldgqItf~d~~~- 551 (893)
T KOG0291|consen 493 -L-ASGSWDKTVRIWDIFSSSGTVETLE-------------IRSDVLAVS-FRPD---GK-ELAVATLDGQITFFDIKE- 551 (893)
T ss_pred -E-EeccccceEEEEEeeccCceeeeEe-------------eccceeEEE-EcCC---CC-eEEEEEecceEEEEEhhh-
Confidence 3 48999999999998654 3455565 345788888 9995 55 899999999999999886
Q ss_pred Ccceeeeec--------------------cCCCeeEEEeecCCCcee
Q 024245 242 GIPLTAMKV--------------------HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 242 ~~~~~~~~~--------------------~~~~v~~~~~s~~g~~ls 268 (270)
...+..+.+ -....+.+++|+||..|-
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il 598 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL 598 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE
Confidence 332222111 124788999999998874
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=8.8e-30 Score=186.09 Aligned_cols=238 Identities=13% Similarity=0.174 Sum_probs=184.4
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
-+.+|..|++.|.+++.+|+.+++++|+.|..-.||++.++.....+.+|. +.|+++.|+. +|.+|+||..+|.|+
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK--DSVt~~~Fsh--dgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK--DSVTCCSFSH--DGTLLATGDMSGKVL 131 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC--CceEEEEEcc--CceEEEecCCCccEE
Confidence 467899999999999999999999999999999999999999999999999 7799999999 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecC---CCCceEEEeccCceeeeccCCCCC----eEecCCCCe
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA---NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK 162 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~ 162 (270)
||+..++.... .+.........+ .+++....+.. .+..-.|.+..+ .....+.||.. -.|.|+|++
T Consensus 132 v~~~stg~~~~----~~~~e~~dieWl--~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr 204 (399)
T KOG0296|consen 132 VFKVSTGGEQW----KLDQEVEDIEWL--KWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKR 204 (399)
T ss_pred EEEcccCceEE----EeecccCceEEE--EecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCce
Confidence 99999986543 222111122222 23334433333 344455677665 55667788877 689999998
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeecc------CcCCCC----------------------------------------
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQ------NSCGGS---------------------------------------- 196 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~---------------------------------------- 196 (270)
++ ++..||+|++|++.+++++.++.. ++....
T Consensus 205 ~~--tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 205 IL--TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ 282 (399)
T ss_pred EE--EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence 76 688899999999999998877761 110000
Q ss_pred -------------------------------------CCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 197 -------------------------------------PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 197 -------------------------------------~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
..|.-.....+..+. |.++ . +|++++.+|.|+.||.|
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~-w~~t-~----~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK-WLNT-D----YLLTACANGKVRQWDAR 356 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE-EcCc-c----hheeeccCceEEeeecc
Confidence 122222334566676 7762 2 89999999999999999
Q ss_pred CCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+ ++++..+.||...|.+++++|+++++
T Consensus 357 t-G~l~~~y~GH~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 357 T-GQLKFTYTGHQMGILDFALSPQKRLV 383 (399)
T ss_pred c-cceEEEEecCchheeEEEEcCCCcEE
Confidence 9 99999999999999999999998875
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-30 Score=190.09 Aligned_cols=236 Identities=17% Similarity=0.242 Sum_probs=184.8
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
+|.+.+.+.||..+|+.+-|+|+-..++++++|++|++||..++++...+++|. +.|..|+|+. .|.+|++++.|-
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt--~sv~di~~~a--~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHT--DSVFDISFDA--SGKYLATCSSDL 172 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccc--cceeEEEEec--CccEEEecCCcc
Confidence 346778899999999999999999999999999999999999999999999999 6699999999 899999999999
Q ss_pred cEEEEEccCC-ccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCC
Q 024245 87 TVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG 160 (270)
Q Consensus 87 ~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~ 160 (270)
.+++||..+- ++ +....++.....+..+....... ...-...+..|++.++..+. ++.+|.. +..+.||
T Consensus 173 ~~~LWd~~~~~~c----~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~-t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 173 SAKLWDFDTFFRC----IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK-TFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred chhheeHHHHHHH----HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE-eccCchHhEEEEEecCCe
Confidence 9999999863 22 22444444444333333222221 22223445678999888876 6777777 5666666
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC------------CCCCceEEEEec
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS------------KSQGFVNVLAGY 228 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~------------~~~g~~~l~~~~ 228 (270)
. ++++++.|.++++|-+.++++...+. .|..+ +-+++ |.|. .+.++ ++++++
T Consensus 248 t--i~As~s~dqtl~vW~~~t~~~k~~lR--------~hEh~----vEci~-wap~~~~~~i~~at~~~~~~~-~l~s~S 311 (406)
T KOG0295|consen 248 T--IIASCSNDQTLRVWVVATKQCKAELR--------EHEHP----VECIA-WAPESSYPSISEATGSTNGGQ-VLGSGS 311 (406)
T ss_pred e--EEEecCCCceEEEEEeccchhhhhhh--------ccccc----eEEEE-ecccccCcchhhccCCCCCcc-EEEeec
Confidence 4 45588899999999999998888877 56443 33333 4442 12245 999999
Q ss_pred CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 229 EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 229 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.|++|++||+.+ +.++.++.+|.+.|.+++|+|.|+||-
T Consensus 312 rDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ 350 (406)
T KOG0295|consen 312 RDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYIL 350 (406)
T ss_pred ccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEE
Confidence 999999999999 899999999999999999999999975
No 23
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.5e-31 Score=194.75 Aligned_cols=231 Identities=14% Similarity=0.265 Sum_probs=172.9
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.++++|.||++.|.|+.|. .+.+++|+.|.+|+|||+++++++.++..|. +.|..+.|+. +++++++.|.++
T Consensus 228 ~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHc--eaVLhlrf~n----g~mvtcSkDrsi 299 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC--EAVLHLRFSN----GYMVTCSKDRSI 299 (499)
T ss_pred HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhc--ceeEEEEEeC----CEEEEecCCcee
Confidence 5788999999999999995 5599999999999999999999999999999 6699999987 799999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-eEecCCCCeEEEEe
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVA 167 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~ 167 (270)
.+||+....-. .....+.++........+... ....+...-....|++.+.+.++ ++.+|.. ++...-...+++ +
T Consensus 300 aVWdm~sps~i-t~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvR-tl~gHkRGIAClQYr~rlvV-S 375 (499)
T KOG0281|consen 300 AVWDMASPTDI-TLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVR-TLNGHKRGIACLQYRDRLVV-S 375 (499)
T ss_pred EEEeccCchHH-HHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeeh-hhhcccccceehhccCeEEE-e
Confidence 99999865421 111233444444443333322 12222333445678888887776 6677777 554444334554 8
Q ss_pred cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc----
Q 024245 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI---- 243 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~---- 243 (270)
|+.|.+|++||+..|.+++.++ ||.. .+-++. |.. + .+++|++||+|++||+.....
T Consensus 376 GSSDntIRlwdi~~G~cLRvLe--------GHEe----LvRciR-Fd~-----k-rIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 376 GSSDNTIRLWDIECGACLRVLE--------GHEE----LVRCIR-FDN-----K-RIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred cCCCceEEEEeccccHHHHHHh--------chHH----hhhhee-ecC-----c-eeeeccccceEEEEecccccCCccc
Confidence 9999999999999999999999 8844 666776 863 2 899999999999999987433
Q ss_pred ----ceeeeeccCCCeeEEEeecCCCceecC
Q 024245 244 ----PLTAMKVHLEPGLECSMWRNPITMSEH 270 (270)
Q Consensus 244 ----~~~~~~~~~~~v~~~~~s~~g~~ls~~ 270 (270)
++..+..|++.|..+.|..-...-|.|
T Consensus 437 ~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssH 467 (499)
T KOG0281|consen 437 ASTLCLRTLVEHSGRVFRLQFDEFQIISSSH 467 (499)
T ss_pred ccchHHHhhhhccceeEEEeecceEEEeccC
Confidence 455666788899988887544433333
No 24
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-30 Score=191.79 Aligned_cols=237 Identities=16% Similarity=0.197 Sum_probs=168.3
Q ss_pred CCCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC---ceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 4 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
...|-+..+++..|++.|+-+.||++|++||+++.|.+..+|++... +..+++.+|. .+|..+.|+| |.++|+
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~--~~V~yi~wSP--DdryLl 285 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS--QPVSYIMWSP--DDRYLL 285 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc--CceEEEEECC--CCCeEE
Confidence 34566788999999999999999999999999999999999998654 3477888888 6799999999 999999
Q ss_pred EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE---E-------------------Ee
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC---Y-------------------ER 138 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------~~ 138 (270)
+++.|..+.+||+.++.+.. ..+.. ..+...++.+.+++.....|+.++. | |+
T Consensus 286 aCg~~e~~~lwDv~tgd~~~----~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRH----LYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDL 360 (519)
T ss_pred ecCchHheeeccCCcchhhh----hcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEE
Confidence 99999999999999997654 22111 1222223333333333333332221 2 22
Q ss_pred c---cCceeee-------------------ccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcC
Q 024245 139 E---VGETVDT-------------------DSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC 193 (270)
Q Consensus 139 ~---~~~~~~~-------------------~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 193 (270)
. +++.+.. ....+.. .++|.++++.++ .-.+..|++||+.....++++.
T Consensus 361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY~---- 434 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKYF---- 434 (519)
T ss_pred EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHhh----
Confidence 1 1111100 1111222 566777775554 3346888999998888888888
Q ss_pred CCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245 194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 194 ~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
||.... .+..-+ |.-. +.. ++++|++|+.|+||+..+ ++++..+.||...|++++|+|....
T Consensus 435 ----Ghkq~~--fiIrSC-Fgg~--~~~-fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 435 ----GHKQGH--FIIRSC-FGGG--NDK-FIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred ----cccccc--eEEEec-cCCC--Ccc-eEEecCCCceEEEEEccC-CceeEeecCCcceeeEEecCCCCHH
Confidence 775432 333333 6643 333 999999999999999999 9999999999999999999996654
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=3.8e-31 Score=195.81 Aligned_cols=227 Identities=16% Similarity=0.268 Sum_probs=179.3
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
..++.|.++|+++.|+++|.+++||+.+|.|++|+.. ...++.+..|.. ..|.+++|+| +...+++++.||+|+||
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~-eaIRdlafSp--nDskF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHA-EAIRDLAFSP--NDSKFLTCSDDGTIKIW 207 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhh-hhhheeccCC--CCceeEEecCCCeEEEE
Confidence 4577899999999999999999999999999999976 445555555542 5699999999 77999999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCC---CceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~ 164 (270)
|....+... .+.++..... ++++++....++.++ .+.+||.+++.++. .+.+|.+ +.|++++++|+
T Consensus 208 df~~~kee~----vL~GHgwdVk--svdWHP~kgLiasgskDnlVKlWDprSg~cl~-tlh~HKntVl~~~f~~n~N~Ll 280 (464)
T KOG0284|consen 208 DFRMPKEER----VLRGHGWDVK--SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA-TLHGHKNTVLAVKFNPNGNWLL 280 (464)
T ss_pred eccCCchhh----eeccCCCCcc--eeccCCccceeEEccCCceeEeecCCCcchhh-hhhhccceEEEEEEcCCCCeeE
Confidence 998776543 4455554444 445555554444443 45668888887776 5556666 89999996544
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
++++|..++++|+++.+.+.++. +|. ..++++. |+|-.. . +|.+|+.||.|..|.+.. .++
T Consensus 281 --t~skD~~~kv~DiR~mkEl~~~r--------~Hk----kdv~~~~-WhP~~~--~-lftsgg~Dgsvvh~~v~~-~~p 341 (464)
T KOG0284|consen 281 --TGSKDQSCKVFDIRTMKELFTYR--------GHK----KDVTSLT-WHPLNE--S-LFTSGGSDGSVVHWVVGL-EEP 341 (464)
T ss_pred --EccCCceEEEEehhHhHHHHHhh--------cch----hhheeec-cccccc--c-ceeeccCCCceEEEeccc-ccc
Confidence 78899999999999988899988 784 4678887 999733 3 999999999999999996 555
Q ss_pred eeee-eccCCCeeEEEeecCCCcee
Q 024245 245 LTAM-KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 245 ~~~~-~~~~~~v~~~~~s~~g~~ls 268 (270)
+..+ .+|...|++++|+|=|..|.
T Consensus 342 ~~~i~~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 342 LGEIPPAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred ccCCCcccccceeeeeccccceeEe
Confidence 5555 47999999999999998875
No 26
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.8e-29 Score=174.83 Aligned_cols=229 Identities=15% Similarity=0.245 Sum_probs=176.8
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
+.+++|.+.|.+++|+-+|..|++|+.|+++.+|+++..+....+....+.+.|..++|.|.+. +.|++++.|++|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEEE
Confidence 6788999999999999999999999999999999999876665544333326799999999644 889999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCC---ceEEEeccCceeeeccCCC-CC-eEecCCCCeEEEE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCD-SK-DDVPAEGPKYMAV 166 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~-~~~s~~~~~~~~~ 166 (270)
|++.+++.. ........ +...+.+.+.....++. +.++|.++.+......... .. ++|+-++..++++
T Consensus 93 d~r~~k~~~----~i~~~~en---i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 93 DIRSGKCTA----RIETKGEN---INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred EeccCcEEE----EeeccCcc---eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEe
Confidence 999997643 33222222 23344455444444333 3345666555444322222 22 8888777777765
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
+| .|.|.|....+.++++.++ +|. ..|.++. |+| +|+ +||+|+.|..+.+||+.. --+++
T Consensus 166 ~G--lG~v~ILsypsLkpv~si~--------AH~----snCicI~-f~p---~Gr-yfA~GsADAlvSLWD~~E-LiC~R 225 (313)
T KOG1407|consen 166 NG--LGCVEILSYPSLKPVQSIK--------AHP----SNCICIE-FDP---DGR-YFATGSADALVSLWDVDE-LICER 225 (313)
T ss_pred cC--CceEEEEeccccccccccc--------cCC----cceEEEE-ECC---CCc-eEeeccccceeeccChhH-hhhhe
Confidence 55 5999999999999999999 784 5788998 999 466 999999999999999998 78899
Q ss_pred eeeccCCCeeEEEeecCCCcee
Q 024245 247 AMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+..+.-+|..++||.||++|.
T Consensus 226 ~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 226 CISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred eeccccCceEEEEeccCcceee
Confidence 9999999999999999999986
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.8e-29 Score=172.52 Aligned_cols=191 Identities=17% Similarity=0.317 Sum_probs=156.0
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
|.+.++.+..|+++|+++.|+-+|+|.++++.|.+|++|+...+.+++++.+|..+ |..++.+. +...|++|+.|+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~--Dnskf~s~GgDk 81 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSS--DNSKFASCGGDK 81 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce--eeeccccc--cccccccCCCCc
Confidence 44578889999999999999999999999999999999999999999999999965 99999988 888999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 166 (270)
.+.+||+++++..+ .+.++......+ .|+.+.. +++
T Consensus 82 ~v~vwDV~TGkv~R----r~rgH~aqVNtV--------------------------------------~fNeesS--Vv~ 117 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDR----RFRGHLAQVNTV--------------------------------------RFNEESS--VVA 117 (307)
T ss_pred eEEEEEcccCeeee----ecccccceeeEE--------------------------------------EecCcce--EEE
Confidence 99999999998765 555555444333 3555554 344
Q ss_pred ecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 167 AGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
+|+.|.++++||.++.. +++.+.. ....+.++. ... . .|++|+.||+++.||++. ++.
T Consensus 118 SgsfD~s~r~wDCRS~s~ePiQilde------------a~D~V~Si~-v~~-----h-eIvaGS~DGtvRtydiR~-G~l 177 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSRSFEPIQILDE------------AKDGVSSID-VAE-----H-EIVAGSVDGTVRTYDIRK-GTL 177 (307)
T ss_pred eccccceeEEEEcccCCCCccchhhh------------hcCceeEEE-ecc-----c-EEEeeccCCcEEEEEeec-cee
Confidence 89999999999998654 6666653 345677766 543 2 899999999999999998 665
Q ss_pred eeeeeccCCCeeEEEeecCCCce
Q 024245 245 LTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 245 ~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
..-.-+ .+|++++|++||...
T Consensus 178 ~sDy~g--~pit~vs~s~d~nc~ 198 (307)
T KOG0316|consen 178 SSDYFG--HPITSVSFSKDGNCS 198 (307)
T ss_pred ehhhcC--CcceeEEecCCCCEE
Confidence 555544 599999999998753
No 28
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-28 Score=173.84 Aligned_cols=232 Identities=16% Similarity=0.240 Sum_probs=171.6
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeE----------------------------------
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS---------------------------------- 54 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~---------------------------------- 54 (270)
++.+.++.-...|+++.|+++|.+|++++.|.+++|||..+++.++
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 3455666677899999999999999999999999999998754443
Q ss_pred ----------EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc
Q 024245 55 ----------SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124 (270)
Q Consensus 55 ----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (270)
.|.+|. ..|.+++.+| .++.+++++.|++|++||++..++.. .+.......+ +.+.....
T Consensus 85 Lsl~dNkylRYF~GH~--~~V~sL~~sP--~~d~FlS~S~D~tvrLWDlR~~~cqg----~l~~~~~pi~--AfDp~GLi 154 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHK--KRVNSLSVSP--KDDTFLSSSLDKTVRLWDLRVKKCQG----LLNLSGRPIA--AFDPEGLI 154 (311)
T ss_pred EEeecCceEEEcCCCC--ceEEEEEecC--CCCeEEecccCCeEEeeEecCCCCce----EEecCCCcce--eECCCCcE
Confidence 345666 6699999999 77999999999999999999876644 2222222333 33333444
Q ss_pred ceecCCC-CceEEEeccC-ceeeeccCC----CCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCC
Q 024245 125 NAKQANE-PKDCYEREVG-ETVDTDSLC----DSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 195 (270)
Q Consensus 125 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~----~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 195 (270)
.+++.++ .+.++|++.. +.+...+.- +.. +.|||||+++|+.+. .+.+++.|.-+|..+.++.
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs------ 226 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN--ASFIYLLDAFDGTVKSTFS------ 226 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC--CCcEEEEEccCCcEeeeEe------
Confidence 4444444 6677888764 222222221 122 999999999998554 5899999999999999998
Q ss_pred CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec-cCCCeeEEEeecCCCce
Q 024245 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPGLECSMWRNPITM 267 (270)
Q Consensus 196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l 267 (270)
++....... .... |.|+ ++ ++++|+.||+|.+|++++ +..+..+.+ +..++.++.|+|.-..+
T Consensus 227 --~~~~~~~~~-~~a~-ftPd---s~-Fvl~gs~dg~i~vw~~~t-g~~v~~~~~~~~~~~~~~~fnP~~~mf 290 (311)
T KOG1446|consen 227 --GYPNAGNLP-LSAT-FTPD---SK-FVLSGSDDGTIHVWNLET-GKKVAVLRGPNGGPVSCVRFNPRYAMF 290 (311)
T ss_pred --eccCCCCcc-eeEE-ECCC---Cc-EEEEecCCCcEEEEEcCC-CcEeeEecCCCCCCccccccCCceeee
Confidence 554433323 3444 9995 55 999999999999999999 888888888 68899999999975443
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-29 Score=194.51 Aligned_cols=232 Identities=15% Similarity=0.176 Sum_probs=200.3
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
..+++..|...|.++.|+|...+++++-..|.|.|||.++...++.+.... .+|.+..|-+ -.+++++|+.|..|+
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--~PvRa~kfia--RknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIA--RKNWIVTGSDDMQIR 80 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc--cchhhheeee--ccceEEEecCCceEE
Confidence 446677799999999999999999999999999999999999999998877 7799999999 668999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~ 164 (270)
+|+.++++.+. .++.+.....++.+.+.... ....+...+..|+.+........++||.. ++|.|....-+
T Consensus 81 Vfnynt~ekV~----~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntF 156 (794)
T KOG0276|consen 81 VFNYNTGEKVK----TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTF 156 (794)
T ss_pred EEecccceeeE----EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccce
Confidence 99999997755 88888888887776654333 34445566778999999899999999999 89999998888
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
+ +++-|++|+||.+.+..+..+++ ||.. .+.++. |-|.+ |.. +|++|+.|.+|+|||..+ ..|
T Consensus 157 a-S~sLDrTVKVWslgs~~~nfTl~--------gHek----GVN~Vd-yy~~g-dkp-ylIsgaDD~tiKvWDyQt-k~C 219 (794)
T KOG0276|consen 157 A-SASLDRTVKVWSLGSPHPNFTLE--------GHEK----GVNCVD-YYTGG-DKP-YLISGADDLTIKVWDYQT-KSC 219 (794)
T ss_pred e-eeeccccEEEEEcCCCCCceeee--------cccc----CcceEE-eccCC-Ccc-eEEecCCCceEEEeecch-HHH
Confidence 6 78889999999999999999999 8843 567777 77752 334 999999999999999999 999
Q ss_pred eeeeeccCCCeeEEEeecCCCc
Q 024245 245 LTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 245 ~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
++++.||...|..+.|+|.=..
T Consensus 220 V~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 220 VQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred HHHhhcccccceEEEecCCCcE
Confidence 9999999999999999996443
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.5e-29 Score=201.24 Aligned_cols=167 Identities=21% Similarity=0.356 Sum_probs=144.8
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.++-.++||..+|+++.|+|.|-|+||||.|++-++|......+.+.+.+|.. -|.|+.|+| +.+++++||.|.+|
T Consensus 484 s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghls--DV~cv~FHP--Ns~Y~aTGSsD~tV 559 (707)
T KOG0263|consen 484 SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS--DVDCVSFHP--NSNYVATGSSDRTV 559 (707)
T ss_pred eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccc--ccceEEECC--cccccccCCCCceE
Confidence 35667899999999999999999999999999999999999999999999994 499999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 168 (270)
++||+.+|..++ .+.++.....+ ++|||+|.++. +|
T Consensus 560 RlWDv~~G~~VR----iF~GH~~~V~a--------------------------------------l~~Sp~Gr~La--Sg 595 (707)
T KOG0263|consen 560 RLWDVSTGNSVR----IFTGHKGPVTA--------------------------------------LAFSPCGRYLA--SG 595 (707)
T ss_pred EEEEcCCCcEEE----EecCCCCceEE--------------------------------------EEEcCCCceEe--ec
Confidence 999999997655 33333322221 66999998654 79
Q ss_pred CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+.||.|++||+.+++++..+. +| .+.+.++. |+.+ |. .||+|+.|.+|++||+..
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~--------~H----t~ti~Sls-FS~d---g~-vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLK--------GH----TGTIYSLS-FSRD---GN-VLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhh--------cc----cCceeEEE-EecC---CC-EEEecCCCCeEEEEEchh
Confidence 999999999999999999999 77 56788888 9985 44 999999999999999875
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=4.9e-28 Score=182.40 Aligned_cols=232 Identities=15% Similarity=0.223 Sum_probs=185.3
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
+..++.+|..|+++|.++.|+..|.||++++.|+++.+||..++...+.+..|. .+-..+.|.. + ..+++++.|+
T Consensus 265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s--~~~lDVdW~~--~-~~F~ts~td~ 339 (524)
T KOG0273|consen 265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS--APALDVDWQS--N-DEFATSSTDG 339 (524)
T ss_pred CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc--CCccceEEec--C-ceEeecCCCc
Confidence 345778899999999999999999999999999999999999999999999997 4457899987 6 7899999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCC-
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG- 160 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~- 160 (270)
.|+|+.+... .|+.++.++...+..+........ ....+.+...+|......... .+.+|.. +.|+|.|
T Consensus 340 ~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~-~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 340 CIHVCKVGED----RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH-DLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred eEEEEEecCC----CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh-hhhhhccceeeEeecCCCC
Confidence 9999999876 556688787777766665543332 223334555667665554433 4555554 6666654
Q ss_pred -------CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 161 -------PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 161 -------~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
...++ +++.|++|++||+..+.++.+|. .| ...+++++ |+|+ |+ |+|+|+.||.|
T Consensus 415 v~~n~~~~~~l~-sas~dstV~lwdv~~gv~i~~f~--------kH----~~pVysva-fS~~---g~-ylAsGs~dg~V 476 (524)
T KOG0273|consen 415 VTSNPNMNLMLA-SASFDSTVKLWDVESGVPIHTLM--------KH----QEPVYSVA-FSPN---GR-YLASGSLDGCV 476 (524)
T ss_pred ccCCCcCCceEE-EeecCCeEEEEEccCCceeEeec--------cC----CCceEEEE-ecCC---Cc-EEEecCCCCee
Confidence 33444 56679999999999999999998 57 44789998 9994 66 99999999999
Q ss_pred EEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+|+.++ ++.++.+.+ .+.|..++|+.+|.+|.
T Consensus 477 ~iws~~~-~~l~~s~~~-~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 477 HIWSTKT-GKLVKSYQG-TGGIFELCWNAAGDKLG 509 (524)
T ss_pred Eeccccc-hheeEeecC-CCeEEEEEEcCCCCEEE
Confidence 9999999 899999886 56799999999998875
No 32
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-28 Score=170.52 Aligned_cols=229 Identities=17% Similarity=0.226 Sum_probs=168.6
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
.++||+.+++.+.|+.+|.+|++++.|....||-..+|+.+.++.+|. +.|+++.... +..++++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt--GavW~~Did~--~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT--GAVWCCDIDW--DSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC--ceEEEEEecC--CcceeeeccccceeEEEE
Confidence 488999999999999999999999999999999998999999999999 5699999998 889999999999999999
Q ss_pred ccCCccCCCCccceecc-cceEEEEeeccCCccce----ecCCCCceEEEeccC-------ceeeeccCCCCC---eEec
Q 024245 93 IENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANA----KQANEPKDCYEREVG-------ETVDTDSLCDSK---DDVP 157 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~s 157 (270)
+++|+++. .++.. ....+.++......... ....+.+.+++++.. +........... ..|.
T Consensus 81 v~tGk~la----~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 81 VETGKQLA----TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred cCCCcEEE----EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 99998643 33322 22222233322211111 112234455666532 222222222222 7899
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
|-++.++ +|.+||.|.+||+++++.+..-.. -| ...+..++ ++|+.. ++++++.|.+-++||
T Consensus 157 ~l~~~ii--~Ghe~G~is~~da~~g~~~v~s~~-------~h----~~~Ind~q-~s~d~T----~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 157 PLGETII--AGHEDGSISIYDARTGKELVDSDE-------EH----SSKINDLQ-FSRDRT----YFITGSKDTTAKLVD 218 (327)
T ss_pred ccCCEEE--EecCCCcEEEEEcccCceeeechh-------hh----cccccccc-ccCCcc----eEEecccCccceeee
Confidence 9998766 588899999999999865443322 45 33678887 998533 999999999999999
Q ss_pred cCCCCc-------------------------------------------------------ceeeeeccCCCeeEEEeec
Q 024245 238 IRNPGI-------------------------------------------------------PLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 238 ~~~~~~-------------------------------------------------------~~~~~~~~~~~v~~~~~s~ 262 (270)
+++ -+ .+...++|-++|++++|+|
T Consensus 219 ~~t-l~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 219 VRT-LEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred ccc-eeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence 875 11 1234678889999999999
Q ss_pred CCCcee
Q 024245 263 NPITMS 268 (270)
Q Consensus 263 ~g~~ls 268 (270)
+|+-.+
T Consensus 298 dGksYs 303 (327)
T KOG0643|consen 298 DGKSYS 303 (327)
T ss_pred CCcccc
Confidence 997654
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=6.8e-30 Score=189.21 Aligned_cols=215 Identities=16% Similarity=0.231 Sum_probs=169.1
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
+..|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|. ++|.++.|++ ++.+++||+.+|.|++|+.....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD--s~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD--SPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc--ccceeEEEcc--CCCEEEEcCCCceEEecccchhh
Confidence 4579999999999999999999999999985544444556787 7799999999 99999999999999999987654
Q ss_pred cCCCCccceeccc-ceEEEEeecc-CCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245 98 LSSNPSLTIKTNS-YHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d 171 (270)
.. .+..+. ..+..+++.. ..........+...+||....+..+ .+.+|.- +.|+|... ++ ++|++|
T Consensus 172 Vk-----~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-vL~GHgwdVksvdWHP~kg-Li-asgskD 243 (464)
T KOG0284|consen 172 VK-----IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-VLRGHGWDVKSVDWHPTKG-LI-ASGSKD 243 (464)
T ss_pred hH-----HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-eeccCCCCcceeccCCccc-ee-EEccCC
Confidence 32 222222 2223233322 2223344556777888887665433 3366665 89999875 33 478899
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 251 (270)
..|++||.++++++.++. +| ...++.+. |+|+++ +|+|+|.|..++++|+++ -+.+.++++|
T Consensus 244 nlVKlWDprSg~cl~tlh--------~H----KntVl~~~-f~~n~N----~Llt~skD~~~kv~DiR~-mkEl~~~r~H 305 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLH--------GH----KNTVLAVK-FNPNGN----WLLTGSKDQSCKVFDIRT-MKELFTYRGH 305 (464)
T ss_pred ceeEeecCCCcchhhhhh--------hc----cceEEEEE-EcCCCC----eeEEccCCceEEEEehhH-hHHHHHhhcc
Confidence 999999999999999998 67 44788998 999643 999999999999999997 7889999999
Q ss_pred CCCeeEEEeec
Q 024245 252 LEPGLECSMWR 262 (270)
Q Consensus 252 ~~~v~~~~~s~ 262 (270)
...|+++.|+|
T Consensus 306 kkdv~~~~WhP 316 (464)
T KOG0284|consen 306 KKDVTSLTWHP 316 (464)
T ss_pred hhhheeecccc
Confidence 99999999999
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.9e-27 Score=180.59 Aligned_cols=229 Identities=20% Similarity=0.357 Sum_probs=176.7
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
++++++|.+.|++++|+|++++|++++.||.|++|++.+++....+..|. ..+..+.|+| +++++++++.|+.|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~l~~~~~~~~i~i 77 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVAASA--DGTYLASGSSDKTIRL 77 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC--cceeEEEECC--CCCEEEEEcCCCeEEE
Confidence 56788999999999999999999999999999999999888888888887 5588999999 8889999999999999
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~ 165 (270)
||+.+++... .+..+......+............. .+...+|++...+.... +..|.. ++|+|++..++
T Consensus 78 ~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~- 151 (289)
T cd00200 78 WDLETGECVR----TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT-LRGHTDWVNSVAFSPDGTFVA- 151 (289)
T ss_pred EEcCcccceE----EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEE-eccCCCcEEEEEEcCcCCEEE-
Confidence 9999864432 3444443344444443323333333 56677788876554443 334543 88999976443
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
+++.|+.|++||+++++.+..+. .| ...+.++. |+|+ ++ .+++++.||.|++||+++ ++++
T Consensus 152 -~~~~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~l~~~~~~~~i~i~d~~~-~~~~ 212 (289)
T cd00200 152 -SSSQDGTIKLWDLRTGKCVATLT--------GH----TGEVNSVA-FSPD---GE-KLLSSSSDGTIKLWDLST-GKCL 212 (289)
T ss_pred -EEcCCCcEEEEEccccccceeEe--------cC----ccccceEE-ECCC---cC-EEEEecCCCcEEEEECCC-Ccee
Confidence 45568999999999888888877 44 33577777 9985 44 788888899999999998 7888
Q ss_pred eeeeccCCCeeEEEeecCCCcee
Q 024245 246 TAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 246 ~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
..+..|...+.+++|+|++.++.
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEE
Confidence 88888889999999999876653
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=168.33 Aligned_cols=192 Identities=20% Similarity=0.201 Sum_probs=153.8
Q ss_pred CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCC---ceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH---RTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~---~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
..++.+++|++.|+.++|+|. |..||+++.|+.|++|+...+ .+...+. +|. ..|.+++|+| .|++|+++|
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk--rsVRsvAwsp--~g~~La~aS 80 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK--RSVRSVAWSP--HGRYLASAS 80 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch--heeeeeeecC--CCcEEEEee
Confidence 467889999999999999997 889999999999999999853 3444443 455 6699999999 999999999
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
.|.++.||.-..++... +. .++||++ ++|+++
T Consensus 81 FD~t~~Iw~k~~~efec--v~------------------------------------------~lEGHEnEVK~Vaws~s 116 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFEC--VA------------------------------------------TLEGHENEVKCVAWSAS 116 (312)
T ss_pred ccceEEEeecCCCceeE--Ee------------------------------------------eeeccccceeEEEEcCC
Confidence 99999999877654321 22 4455555 789999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcc---eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
|.+| | +++.|.+|-||.+..+. +...++ .|... +-.+. |+|.+. +|+++++|.+|++|
T Consensus 117 G~~L-A-TCSRDKSVWiWe~deddEfec~aVL~--------~HtqD----VK~V~-WHPt~d----lL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 117 GNYL-A-TCSRDKSVWIWEIDEDDEFECIAVLQ--------EHTQD----VKHVI-WHPTED----LLFSCSYDNTIKVY 177 (312)
T ss_pred CCEE-E-EeeCCCeEEEEEecCCCcEEEEeeec--------ccccc----ccEEE-EcCCcc----eeEEeccCCeEEEE
Confidence 9754 3 67889999999987543 566676 67553 44454 999754 99999999999999
Q ss_pred EcCC--CCcceeeeeccCCCeeEEEeecCCCce
Q 024245 237 DIRN--PGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 237 d~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+-.. .-++.+++.+|...|++++|+++|..|
T Consensus 178 ~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 178 RDEDDDDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred eecCCCCeeEEEEecCccceEEEEEecCCCceE
Confidence 8763 246899999999999999999999654
No 36
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.1e-27 Score=189.25 Aligned_cols=192 Identities=18% Similarity=0.286 Sum_probs=142.2
Q ss_pred cccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCCC-CEEEEE
Q 024245 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQ 82 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~ 82 (270)
..+.||.+.|++++|+| ++.+|++|+.|++|++||+.++ +++..+.+|. ..|.+++|+| ++ ++|+++
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~--~~V~~l~f~P--~~~~iLaSg 144 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT--KKVGIVSFHP--SAMNVLASA 144 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC--CcEEEEEeCc--CCCCEEEEE
Confidence 34789999999999999 8889999999999999999764 3566788887 6699999999 64 689999
Q ss_pred eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCe
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 162 (270)
+.|++|++||+++++... .+..+...... ++|+|+|..
T Consensus 145 s~DgtVrIWDl~tg~~~~----~l~~h~~~V~s--------------------------------------la~spdG~l 182 (493)
T PTZ00421 145 GADMVVNVWDVERGKAVE----VIKCHSDQITS--------------------------------------LEWNLDGSL 182 (493)
T ss_pred eCCCEEEEEECCCCeEEE----EEcCCCCceEE--------------------------------------EEEECCCCE
Confidence 999999999998875322 22222211111 568999974
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE-e---cCCCcEEEEEc
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-G---YEDGSILVWDI 238 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~-~---~~dg~i~vwd~ 238 (270)
++ +++.|+.|+|||+++++.+.++. +|... ....+. |.|+ +. .+++ | +.|+.|++||+
T Consensus 183 La--tgs~Dg~IrIwD~rsg~~v~tl~--------~H~~~---~~~~~~-w~~~---~~-~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 183 LC--TTSKDKKLNIIDPRDGTIVSSVE--------AHASA---KSQRCL-WAKR---KD-LIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred EE--EecCCCEEEEEECCCCcEEEEEe--------cCCCC---cceEEE-EcCC---CC-eEEEEecCCCCCCeEEEEeC
Confidence 43 67789999999999999988887 67432 222344 8874 23 4544 4 35899999999
Q ss_pred CCCCcceeeeeccC-CCeeEEEeecCCCce
Q 024245 239 RNPGIPLTAMKVHL-EPGLECSMWRNPITM 267 (270)
Q Consensus 239 ~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l 267 (270)
++...++.....+. ..+....|++++.+|
T Consensus 245 r~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 245 RKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred CCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 98666666555433 455566788888764
No 37
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-27 Score=175.76 Aligned_cols=239 Identities=16% Similarity=0.293 Sum_probs=183.1
Q ss_pred CCcccccccccccEEEEEEeCCCC---EEEEecCCCcEEEEeCCCCce----eEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHRT----VSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
.+...++.||.++|.+++|.-... .+++++.|.++++|.++.++. ++...+|. .+|.++...+ ++..++
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk--~~V~sVsv~~--sgtr~~ 209 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK--RSVDSVSVDS--SGTRFC 209 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc--cceeEEEecC--CCCeEE
Confidence 357788999999999888865333 699999999999999987653 33345777 7799999999 999999
Q ss_pred EEeCCCcEEEEEccCC---------------------ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEec
Q 024245 81 SQGRDGTVKCWDIENG---------------------GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYERE 139 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (270)
+|+.|.+|.+|+..+. ...+.|+..+.++......+.+..............+..||+.
T Consensus 210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEee
Confidence 9999999999993221 0112556666777766665555553333444445667789999
Q ss_pred cCceeeeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcc---eeeeeccCcCCCCCCcccCCCceeeeeeecC
Q 024245 140 VGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL 214 (270)
Q Consensus 140 ~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 214 (270)
.+...........- +..+|... ++ ++|+.|..|++||.+++. ..++|. ||.+ .+.++. |+
T Consensus 290 tg~~~~~~~~~ksl~~i~~~~~~~-Ll-~~gssdr~irl~DPR~~~gs~v~~s~~--------gH~n----wVssvk-ws 354 (423)
T KOG0313|consen 290 TGGLKSTLTTNKSLNCISYSPLSK-LL-ASGSSDRHIRLWDPRTGDGSVVSQSLI--------GHKN----WVSSVK-WS 354 (423)
T ss_pred cccceeeeecCcceeEeecccccc-ee-eecCCCCceeecCCCCCCCceeEEeee--------cchh----hhhhee-cC
Confidence 98877755554444 77778654 44 478889999999999875 445566 7843 788887 99
Q ss_pred CCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 215 PSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 215 p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
|. +. +.|++|+.|+++++||+|+...++..+.+|.+.|.++.|+..+..+|
T Consensus 355 p~--~~-~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvS 405 (423)
T KOG0313|consen 355 PT--NE-FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVS 405 (423)
T ss_pred CC--Cc-eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEe
Confidence 96 33 49999999999999999996669999999999999999998877665
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-28 Score=189.84 Aligned_cols=195 Identities=19% Similarity=0.325 Sum_probs=158.5
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
.+.++.+..|.+-|+|++.+|...+++++|.|-.|++||.+.. .+.++|.+|. ..|.+++|+|. |.+.++|++.|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~--HyVMqv~fnPk-D~ntFaS~sLDr 163 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE--HYVMQVAFNPK-DPNTFASASLDR 163 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc--eEEEEEEecCC-Cccceeeeeccc
Confidence 3578899999999999999999999999999999999999865 7889999999 55999999996 568999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 166 (270)
+|++|.+.+. .|.++++++.....++. +-+.|..-.++
T Consensus 164 TVKVWslgs~----~~nfTl~gHekGVN~Vd--------------------------------------yy~~gdkpylI 201 (794)
T KOG0276|consen 164 TVKVWSLGSP----HPNFTLEGHEKGVNCVD--------------------------------------YYTGGDKPYLI 201 (794)
T ss_pred cEEEEEcCCC----CCceeeeccccCcceEE--------------------------------------eccCCCcceEE
Confidence 9999999877 45677877766655444 32333222233
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
+|++|.+|+|||..+..|+++++ ||.. .+..+. |+|.-+ .+++|++||+++||...+ -+...
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLe--------GHt~----Nvs~v~-fhp~lp----iiisgsEDGTvriWhs~T-y~lE~ 263 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLE--------GHTN----NVSFVF-FHPELP----IIISGSEDGTVRIWNSKT-YKLEK 263 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhh--------cccc----cceEEE-ecCCCc----EEEEecCCccEEEecCcc-eehhh
Confidence 89999999999999999999999 8855 455565 999765 999999999999999888 66666
Q ss_pred eeeccCCCeeEEEeecCCC
Q 024245 247 AMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s~~g~ 265 (270)
++.---+.|++++-.+.+.
T Consensus 264 tLn~gleRvW~I~~~k~~~ 282 (794)
T KOG0276|consen 264 TLNYGLERVWCIAAHKGDG 282 (794)
T ss_pred hhhcCCceEEEEeecCCCC
Confidence 6665556777777666443
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.7e-28 Score=193.57 Aligned_cols=232 Identities=14% Similarity=0.222 Sum_probs=186.9
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.++..|.+|.++|+.++|+|++.+++||+.|-.|+||+.++.+++.++.+|. +.|..+.|++ .--+++|+|.|.+|
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl--DYVRt~~FHh--eyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL--DYVRTVFFHH--EYPWILSASDDQTI 117 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc--ceeEEeeccC--CCceEEEccCCCeE
Confidence 3677889999999999999999999999999999999999999999999999 7799999999 77899999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccC--------------------------
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVG-------------------------- 141 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------------- 141 (270)
+||+..+++++. .+.++....++..+.+..+... ..-...+++||+..-
T Consensus 118 rIWNwqsr~~ia----vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~ 193 (1202)
T KOG0292|consen 118 RIWNWQSRKCIA----VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQ 193 (1202)
T ss_pred EEEeccCCceEE----EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCC
Confidence 999999997754 7777777776666655433332 233455677876421
Q ss_pred --ceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeec
Q 024245 142 --ETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 213 (270)
Q Consensus 142 --~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 213 (270)
..++..++||.. ++|+|.-+ ++++|++|..|++|.+...+ .+.+.. ||.+ .+.++. |
T Consensus 194 ~DaVVK~VLEGHDRGVNwaAfhpTlp--liVSG~DDRqVKlWrmnetKaWEvDtcr--------gH~n----nVssvl-f 258 (1202)
T KOG0292|consen 194 TDAVVKHVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNETKAWEVDTCR--------GHYN----NVSSVL-F 258 (1202)
T ss_pred cCeeeeeeecccccccceEEecCCcc--eEEecCCcceeeEEEeccccceeehhhh--------cccC----CcceEE-e
Confidence 134456678877 88999886 33489999999999997655 344445 7754 566666 9
Q ss_pred CCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 214 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 214 ~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+|... ++++.++|++|+|||+.. ...++++....+..+.++-+|...++.
T Consensus 259 hp~q~----lIlSnsEDksirVwDm~k-Rt~v~tfrrendRFW~laahP~lNLfA 308 (1202)
T KOG0292|consen 259 HPHQD----LILSNSEDKSIRVWDMTK-RTSVQTFRRENDRFWILAAHPELNLFA 308 (1202)
T ss_pred cCccc----eeEecCCCccEEEEeccc-ccceeeeeccCCeEEEEEecCCcceee
Confidence 99633 999999999999999998 889999987788899999999877654
No 40
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4.1e-27 Score=189.65 Aligned_cols=231 Identities=21% Similarity=0.309 Sum_probs=177.8
Q ss_pred ccccccc-cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 11 VAVLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 11 ~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+.+.+| ...|.++.|+++|+++++++.|+.+++|+....+ ..+.+.+|. ..|..++|+| ++.++++++.|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~--~~v~~~~fs~--d~~~l~s~s~D~t 226 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT--RGVSDVAFSP--DGSYLLSGSDDKT 226 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc--cceeeeEECC--CCcEEEEecCCce
Confidence 5555554 7899999999999999999999999999997777 677777787 6699999999 9999999999999
Q ss_pred EEEEEccC-CccCCCCccceecccceEEEEeeccCC-ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245 88 VKCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP 161 (270)
Q Consensus 88 i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~ 161 (270)
|++||++. +.. +..+.++......+.+.... ........+.+.+|++++++... .+.+|.. ++|++++.
T Consensus 227 iriwd~~~~~~~----~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~-~l~~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 227 LRIWDLKDDGRN----LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR-KLKGHSDGISGLAFSPDGN 301 (456)
T ss_pred EEEeeccCCCeE----EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE-eeeccCCceEEEEECCCCC
Confidence 99999943 344 33666666655444433333 33445556778889999955444 6677766 88999998
Q ss_pred eEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
.++ +++.|+.|+|||+.++. ++..+. ++... . .+..++ |+|+ +. +|+++..|+.+++||++
T Consensus 302 ~l~--s~s~d~~i~vwd~~~~~~~~~~~~~--------~~~~~-~-~~~~~~-fsp~---~~-~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 302 LLV--SASYDGTIRVWDLETGSKLCLKLLS--------GAENS-A-PVTSVQ-FSPN---GK-YLLSASLDRTLKLWDLR 364 (456)
T ss_pred EEE--EcCCCccEEEEECCCCceeeeeccc--------CCCCC-C-ceeEEE-ECCC---Cc-EEEEecCCCeEEEEEcc
Confidence 665 45779999999999999 556666 45332 2 677887 9995 55 99999999999999999
Q ss_pred CCCcceeeeeccCCC---eeEEEeecCCCcee
Q 024245 240 NPGIPLTAMKVHLEP---GLECSMWRNPITMS 268 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~---v~~~~~s~~g~~ls 268 (270)
. +..+..+.+|... +.+...++.|.+|.
T Consensus 365 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 365 S-GKSVGTYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred C-CcceeeecccCCcceeEecccccCCCCeEE
Confidence 9 8888888888764 33445566666653
No 41
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5.2e-27 Score=186.25 Aligned_cols=232 Identities=18% Similarity=0.252 Sum_probs=184.0
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCC-CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+++.+.--...|..++|+..|.+||.|+.. |.+.||++.+..-+-..++|. ..+.+++++| ||+++++|++||.
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSp--Dgq~iaTG~eDgK 373 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSP--DGQLIATGAEDGK 373 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECC--CCcEEEeccCCCc
Confidence 4667777667899999999999999998765 899999999888888888888 6699999999 9999999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCe
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK 162 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~ 162 (270)
|+|||..++-| +.++..+......+.+....... ...-.+.++.||+...+..+........ ++..|.|..
T Consensus 374 VKvWn~~SgfC----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 374 VKVWNTQSGFC----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred EEEEeccCceE----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 99999999866 44777777766666665544443 3344677888999888776643322222 666677874
Q ss_pred EEEEecCCC-ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 163 YMAVAGEQL-SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 163 ~~~~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
+. +|+.| -.|++|++.+|+.+..+. ||. +.+.+++ |+|. +. .|++|+.|.+|++||+-..
T Consensus 450 V~--AG~~d~F~IfvWS~qTGqllDiLs--------GHE----gPVs~l~-f~~~---~~-~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 450 VC--AGAQDSFEIFVWSVQTGQLLDILS--------GHE----GPVSGLS-FSPD---GS-LLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EE--eeccceEEEEEEEeecCeeeehhc--------CCC----CcceeeE-Eccc---cC-eEEeccccceEEEEEeecc
Confidence 43 35544 479999999999999999 884 4677777 9995 44 9999999999999999875
Q ss_pred CcceeeeeccCCCeeEEEeecCCCcee
Q 024245 242 GIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
...+.++. +...++.++|+|||+.|.
T Consensus 511 ~~~vEtl~-i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 511 SGTVETLE-IRSDVLAVSFRPDGKELA 536 (893)
T ss_pred CceeeeEe-eccceeEEEEcCCCCeEE
Confidence 55677776 567899999999998874
No 42
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=5.1e-28 Score=179.53 Aligned_cols=234 Identities=17% Similarity=0.239 Sum_probs=177.3
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+.+.+|.|-.++|+.+.|.+++.++++++.|+.+++|++.+.+...++.+|. +.|+++.|.. ....+++|+.|.+|
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt--dkVt~ak~~~--~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT--DKVTAAKFKL--SHSRVVSGSADRTI 285 (459)
T ss_pred hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccc--cceeeehhhc--cccceeeccccchh
Confidence 4678888889999999999999999999999999999999999999999999 5599999988 64569999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV 166 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~ 166 (270)
++||+....+.+.++..-........ .......-....+++||++..........+..- +..++++..++.
T Consensus 286 K~WDl~k~~C~kt~l~~S~cnDI~~~------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLs- 358 (459)
T KOG0288|consen 286 KLWDLQKAYCSKTVLPGSQCNDIVCS------ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLS- 358 (459)
T ss_pred hhhhhhhhheeccccccccccceEec------ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEee-
Confidence 99999998776643332222221111 111111222344788998887766543333222 889999987774
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
++.|.++.+.|+++.+....+.-. +.. -....+.+. |+|+ +. |+++|+.||.|+||++.+ +++..
T Consensus 359 -ssRDdtl~viDlRt~eI~~~~sA~------g~k--~asDwtrvv-fSpd---~~-YvaAGS~dgsv~iW~v~t-gKlE~ 423 (459)
T KOG0288|consen 359 -SSRDDTLKVIDLRTKEIRQTFSAE------GFK--CASDWTRVV-FSPD---GS-YVAAGSADGSVYIWSVFT-GKLEK 423 (459)
T ss_pred -ecCCCceeeeecccccEEEEeecc------ccc--cccccceeE-ECCC---Cc-eeeeccCCCcEEEEEccC-ceEEE
Confidence 467999999999999988877621 111 112355666 9995 44 999999999999999999 88888
Q ss_pred eeeccCC--CeeEEEeecCCCcee
Q 024245 247 AMKVHLE--PGLECSMWRNPITMS 268 (270)
Q Consensus 247 ~~~~~~~--~v~~~~~s~~g~~ls 268 (270)
.+..... .|++++|+|.|..|-
T Consensus 424 ~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 424 VLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred EeccCCCCcceEEEEEcCCCchhh
Confidence 8876554 499999999998763
No 43
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=178.17 Aligned_cols=225 Identities=21% Similarity=0.312 Sum_probs=178.7
Q ss_pred cccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.+..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+...++...+..|. +.|..|++.. +.++++++|++|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~--G~V~Gi~v~~----~~~~tvgdDKtv 131 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE--GLVRGICVTQ----TSFFTVGDDKTV 131 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc--CceeeEEecc----cceEEecCCcce
Confidence 567889999999999999976 689999999999999999999999999998 6699999976 689999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeecc-CCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYM 164 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~ 164 (270)
+.|.++.. |..++.+..... .++- .....+...|..+.+||......+.....+... +.|+|....+|
T Consensus 132 K~wk~~~~-----p~~tilg~s~~~---gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 132 KQWKIDGP-----PLHTILGKSVYL---GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL 203 (433)
T ss_pred eeeeccCC-----cceeeecccccc---ccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence 99998752 222332222111 1111 122344556667889998877776665555554 88999998888
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
++++ .|++|.|||++++.+++.+.. ..-...++ |+|. +. .+++|++|..++.+|++....+
T Consensus 204 as~~-sDrsIvLyD~R~~~Pl~KVi~-------------~mRTN~Is-wnPe---af-nF~~a~ED~nlY~~DmR~l~~p 264 (433)
T KOG0268|consen 204 ASCA-SDRSIVLYDLRQASPLKKVIL-------------TMRTNTIC-WNPE---AF-NFVAANEDHNLYTYDMRNLSRP 264 (433)
T ss_pred eeec-cCCceEEEecccCCccceeee-------------ecccccee-cCcc---cc-ceeeccccccceehhhhhhccc
Confidence 7554 589999999999999888773 22334555 9992 33 7999999999999999998999
Q ss_pred eeeeeccCCCeeEEEeecCCCce
Q 024245 245 LTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 245 ~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+....+|.++|.++.|||.|+.+
T Consensus 265 ~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 265 LNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred chhhcccceeEEEeccCCCcchh
Confidence 99999999999999999999765
No 44
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.6e-26 Score=185.76 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=139.2
Q ss_pred CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCc--------eeEEEeecCCCcceEEEEEeeCCCCCE-
Q 024245 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR--------TVSSSWVHSAAHGIVSVATGPSIGLNK- 78 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~- 78 (270)
.++..+.+|.+.|.+++|+|+ +.+||+|+.|+.|+|||+.++. ++..+.+|. ..|.+++|+| ++..
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--~~V~sVaf~P--~g~~i 140 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK--KKISIIDWNP--MNYYI 140 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC--CcEEEEEECC--CCCeE
Confidence 357789999999999999996 7899999999999999997542 334567787 6699999999 7665
Q ss_pred EEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecC
Q 024245 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (270)
Q Consensus 79 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 158 (270)
|++++.|++|++||+++++... .+... .... + ++|+|
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~----~i~~~-~~V~--S------------------------------------lswsp 177 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAF----QINMP-KKLS--S------------------------------------LKWNI 177 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEE----EEecC-CcEE--E------------------------------------EEECC
Confidence 5789999999999999875321 22111 1100 0 56999
Q ss_pred CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC----cEE
Q 024245 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG----SIL 234 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg----~i~ 234 (270)
+|..+ + +++.|+.|+|||+++++.+.++. +|.......+..+..|+++ +. +|++++.|+ .|+
T Consensus 178 dG~lL-a-t~s~D~~IrIwD~Rsg~~i~tl~--------gH~g~~~s~~v~~~~fs~d---~~-~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 178 KGNLL-S-GTCVGKHMHIIDPRKQEIASSFH--------IHDGGKNTKNIWIDGLGGD---DN-YILSTGFSKNNMREMK 243 (568)
T ss_pred CCCEE-E-EEecCCEEEEEECCCCcEEEEEe--------cccCCceeEEEEeeeEcCC---CC-EEEEEEcCCCCccEEE
Confidence 99854 3 45578999999999999998888 7865433332222226664 44 777777664 799
Q ss_pred EEEcCCCCcceeeeeccC--CCeeEEEeecCCCce
Q 024245 235 VWDIRNPGIPLTAMKVHL--EPGLECSMWRNPITM 267 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l 267 (270)
|||+++..+++..+..+. +.+......++|.++
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 999997567776654322 333333333445544
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.9e-28 Score=167.67 Aligned_cols=211 Identities=17% Similarity=0.242 Sum_probs=166.5
Q ss_pred CCCCCCcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 4 RPPPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 4 ~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
.+.|..|++.++.|+..|.++.|++ +++.++++|.|++|++|+....+.+.++.+|. ..|+..+|+|. .+++++++
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~--~~Iy~a~~sp~-~~nlfas~ 166 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN--SCIYQAAFSPH-IPNLFASA 166 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc--cEEEEEecCCC-CCCeEEEc
Confidence 3556689999999999999999999 66678888999999999999999999999998 77999999997 56999999
Q ss_pred eCCCcEEEEEccCCccCCCCccceecccc--eEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEe
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV 156 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (270)
|.|+++++||++...... .++.+.. ..|.++-............+.++.||++.-+.....+.+|.- +.|
T Consensus 167 Sgd~~l~lwdvr~~gk~~----~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPGKFM----SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF 242 (311)
T ss_pred cCCceEEEEEecCCCcee----EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec
Confidence 999999999998764322 2444442 223333333333444555667788999999988888889888 999
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
||....+++ +++.|-+++|||...+. .+.+.. .| ...+..+. |++- ++. ++|+++-|+.++|
T Consensus 243 Sph~~~lLa-SasYDmT~riw~~~~~ds~~e~~~--------~H----tEFv~g~D-ws~~--~~~-~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 243 SPHHASLLA-SASYDMTVRIWDPERQDSAIETVD--------HH----TEFVCGLD-WSLF--DPG-QVASTGWDELLYV 305 (311)
T ss_pred CcchhhHhh-hccccceEEecccccchhhhhhhh--------cc----ceEEeccc-cccc--cCc-eeeecccccceee
Confidence 999988776 78899999999998555 444444 34 44677777 8876 333 8999999999999
Q ss_pred EEc
Q 024245 236 WDI 238 (270)
Q Consensus 236 wd~ 238 (270)
|+-
T Consensus 306 w~p 308 (311)
T KOG0277|consen 306 WNP 308 (311)
T ss_pred ecc
Confidence 984
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=5.8e-27 Score=185.38 Aligned_cols=230 Identities=14% Similarity=0.221 Sum_probs=177.6
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc----eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
+.+.||++.|.+++...+|-+|+||+.|.++++|.++++. ++....+|. ..|.+++++.- ...+|+++|.|++
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~--~svgava~~~~-~asffvsvS~D~t 435 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT--NSVGAVAGSKL-GASFFVSVSQDCT 435 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc--cccceeeeccc-CccEEEEecCCce
Confidence 3788999999999966778899999999999999885543 445567788 56999999762 3468999999999
Q ss_pred EEEEEccCCccCCC-Ccc----ceecccceEEEEeeccCCccceecCCC---CceEEEeccCceeeeccCCCCC----eE
Q 024245 88 VKCWDIENGGLSSN-PSL----TIKTNSYHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDTDSLCDSK----DD 155 (270)
Q Consensus 88 i~~wd~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~ 155 (270)
+++|++...+.... +.+ ....|...+.++++.. ....+++++ ...+|+++ .-.+...+.||.. +.
T Consensus 436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~--ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~ 512 (775)
T KOG0319|consen 436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP--NDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVS 512 (775)
T ss_pred EEEecCCCcccccccceehhhHHHHhhcccccceEecC--CCceEEecccccceeeeccc-CceEEEEeeCCccceEEEE
Confidence 99999987332221 122 2233444444444443 333444444 44568888 4456668899988 99
Q ss_pred ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
|+|..+ +++ ++|.|++|+||.+.+..++++|. ||. ..+..+. |-.+ |. .|++++.||.|++
T Consensus 513 Fs~~dq-~la-T~SgD~TvKIW~is~fSClkT~e--------GH~----~aVlra~-F~~~---~~-qliS~~adGliKl 573 (775)
T KOG0319|consen 513 FSKNDQ-LLA-TCSGDKTVKIWSISTFSCLKTFE--------GHT----SAVLRAS-FIRN---GK-QLISAGADGLIKL 573 (775)
T ss_pred eccccc-eeE-eccCCceEEEEEeccceeeeeec--------Ccc----ceeEeee-eeeC---Cc-EEEeccCCCcEEE
Confidence 999986 444 66679999999999999999999 884 4677777 8864 44 8999999999999
Q ss_pred EEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 236 WDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
|++++ ..|+.++.+|.+.|++++-+|++..+
T Consensus 574 Wnikt-~eC~~tlD~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 574 WNIKT-NECEMTLDAHNDRVWALSVSPLLDMF 604 (775)
T ss_pred Eeccc-hhhhhhhhhccceeEEEeecCcccee
Confidence 99999 99999999999999999999987644
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.4e-25 Score=171.26 Aligned_cols=230 Identities=23% Similarity=0.380 Sum_probs=177.3
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+....+.+|...+..+.|+|+++++++++.||.|++||+.+++.+..+..+. ..|.++.|++ +++++++++.|+.|
T Consensus 42 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~~~~~~~~~~i 117 (289)
T cd00200 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT--SYVSSVAFSP--DGRILSSSSRDKTI 117 (289)
T ss_pred CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC--CcEEEEEEcC--CCCEEEEecCCCeE
Confidence 3556778899999999999999999999999999999999888888888777 5699999999 87888888889999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
.+||+++++... .+..+......+.+........... .+...+|++...+.... +..|.. ++|+|+++.+
T Consensus 118 ~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 118 KVWDVETGKCLT----TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT-LTGHTGEVNSVAFSPDGEKL 192 (289)
T ss_pred EEEECCCcEEEE----EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee-EecCccccceEEECCCcCEE
Confidence 999998765432 3333443344444444333333333 66777888876654443 334442 8999999766
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
++ ++ .|+.|++||++.++.+..+. .| ...+.++. |+|+ +. ++++++.||.|++||+.+ ++
T Consensus 193 ~~-~~-~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~~~~~~~~~~i~i~~~~~-~~ 252 (289)
T cd00200 193 LS-SS-SDGTIKLWDLSTGKCLGTLR--------GH----ENGVNSVA-FSPD---GY-LLASGSEDGTIRVWDLRT-GE 252 (289)
T ss_pred EE-ec-CCCcEEEEECCCCceecchh--------hc----CCceEEEE-EcCC---Cc-EEEEEcCCCcEEEEEcCC-ce
Confidence 64 33 48999999999988888775 34 33677777 9985 33 888888899999999998 78
Q ss_pred ceeeeeccCCCeeEEEeecCCCce
Q 024245 244 PLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 244 ~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+...+..|...|.+++|+|++.+|
T Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~~l 276 (289)
T cd00200 253 CVQTLSGHTNSVTSLAWSPDGKRL 276 (289)
T ss_pred eEEEccccCCcEEEEEECCCCCEE
Confidence 888888999999999999997665
No 48
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.1e-26 Score=173.16 Aligned_cols=227 Identities=12% Similarity=0.150 Sum_probs=175.4
Q ss_pred ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
++|...|.+++.++||+|||+|+.|..|.||+..+.+.++.+.+|. +.|.+++|-. ..+.|++++.|++|++|++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr--~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHR--GAVSSLAFRK--GTSELYSASADRSVKVWSID 274 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccc--cceeeeeeec--CccceeeeecCCceEEEehh
Confidence 4899999999999999999999999999999999999999999999 6699999988 77899999999999999998
Q ss_pred CCccCCCCccceecccceEEEEeeccCCccceec-CCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecC
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE 169 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~ 169 (270)
....+. ++.+++..+..++........... ......+|++... .+..+.++.. ++|-.+.. ++ +|+
T Consensus 275 ~~s~ve----tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~H-fv--sGS 345 (479)
T KOG0299|consen 275 QLSYVE----TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDEH-FV--SGS 345 (479)
T ss_pred HhHHHH----HHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecccc-ee--ecc
Confidence 776543 666776666655544433333322 4456677888333 3334555553 66666553 43 799
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCC-------ceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR-------GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~-------~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
++|.|.+|++.+.+++.+... +|..... .++++++ ..|... ++++|+.+|.|++|-+..+.
T Consensus 346 dnG~IaLWs~~KKkplf~~~~-------AHgv~~~~~~~~~~~Witsla-~i~~sd----L~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRL-------AHGVIPELDPVNGNFWITSLA-VIPGSD----LLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred CCceEEEeeecccCceeEeec-------cccccCCccccccccceeeeE-ecccCc----eEEecCCCCceEEEEecCCc
Confidence 999999999999999888775 4432211 2788887 777533 99999999999999999853
Q ss_pred ---cceeeeeccCCCeeEEEeecCCCce
Q 024245 243 ---IPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 243 ---~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
.++..+. -.+.|++++|+++|+.|
T Consensus 414 r~i~~l~~ls-~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 414 RAINLLYSLS-LVGFVNSLAFSNSGKRI 440 (479)
T ss_pred cccceeeecc-cccEEEEEEEccCCCEE
Confidence 4555555 46889999999999854
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=4.5e-28 Score=176.72 Aligned_cols=211 Identities=17% Similarity=0.259 Sum_probs=160.0
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
...|.|+.+. ...+++|..|++|+|||.++..+.+.+.+|. +.|.|+.|.. ..+++|+.|.+|++||+++++
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHt--GSVLCLqyd~----rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHT--GSVLCLQYDE----RVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCC--CcEEeeeccc----eEEEecCCCceEEEEeccCCc
Confidence 4679999984 5589999999999999999999999999999 6699999966 799999999999999999997
Q ss_pred cCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCc--eeeeccCCCCC--eEecCCCCeEEEEecCCCce
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSE 173 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~ 173 (270)
.+. ++-.+......+.+.. .......-.-....|++.... .....+.||.. -...-+.++++ +++.|.+
T Consensus 269 ~l~----tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIV--sASgDRT 341 (499)
T KOG0281|consen 269 PLN----TLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRT 341 (499)
T ss_pred hhh----HHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEE--EecCCce
Confidence 654 4433333332222221 111222233455678876554 44567788887 22333445444 5666999
Q ss_pred EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCC
Q 024245 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (270)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 253 (270)
|++|++.++++++++. ||.- .+.+++ + .|+ ++++|++|.+|++||+.. +.++..++||..
T Consensus 342 ikvW~~st~efvRtl~--------gHkR----GIAClQ-Y-----r~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEe 401 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLN--------GHKR----GIACLQ-Y-----RDR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEE 401 (499)
T ss_pred EEEEeccceeeehhhh--------cccc----cceehh-c-----cCe-EEEecCCCceEEEEeccc-cHHHHHHhchHH
Confidence 9999999999999999 7833 344555 5 355 999999999999999999 999999999999
Q ss_pred CeeEEEeecC
Q 024245 254 PGLECSMWRN 263 (270)
Q Consensus 254 ~v~~~~~s~~ 263 (270)
-|.++.|...
T Consensus 402 LvRciRFd~k 411 (499)
T KOG0281|consen 402 LVRCIRFDNK 411 (499)
T ss_pred hhhheeecCc
Confidence 9999999753
No 50
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=167.26 Aligned_cols=237 Identities=16% Similarity=0.207 Sum_probs=190.1
Q ss_pred CCCCCCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
|.+..-....+.+|.||+++|+....+.+....|+++.|-+-+|||.-+|..+..|. |. .-|.+++|+. |.++|+
T Consensus 42 mlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hk--hivk~~af~~--ds~~ll 116 (334)
T KOG0278|consen 42 MLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HK--HIVKAVAFSQ--DSNYLL 116 (334)
T ss_pred hhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hh--heeeeEEecc--cchhhh
Confidence 334444456789999999999999999999999999999999999999999988886 55 4599999999 999999
Q ss_pred EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc-cceecCCCCceEEEeccCceeeeccCCCCC--eEec
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVP 157 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s 157 (270)
+|+.++.+++||++..+ .|...+.+++..+...-++.... .........+++||.+++..+......+.. +.++
T Consensus 117 tgg~ekllrvfdln~p~---App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs 193 (334)
T KOG0278|consen 117 TGGQEKLLRVFDLNRPK---APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVS 193 (334)
T ss_pred ccchHHHhhhhhccCCC---CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeec
Confidence 99999999999998765 44556667766665544443333 333466778899999999887765544443 9999
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
++|+++.++ +.+.|.+||..+-.+++.++. ...+.+.. .+|.. . .+++|++|..++.||
T Consensus 194 ~dG~ilTia---~gssV~Fwdaksf~~lKs~k~-------------P~nV~SAS-L~P~k---~-~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 194 QDGRILTIA---YGSSVKFWDAKSFGLLKSYKM-------------PCNVESAS-LHPKK---E-FFVAGGEDFKVYKFD 252 (334)
T ss_pred cCCCEEEEe---cCceeEEeccccccceeeccC-------------cccccccc-ccCCC---c-eEEecCcceEEEEEe
Confidence 999866543 347899999999998888884 33455665 88863 2 899999999999999
Q ss_pred cCCCCcceeee-eccCCCeeEEEeecCCCce
Q 024245 238 IRNPGIPLTAM-KVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l 267 (270)
..+ ++.+..+ ++|-++|.++.|+|||..-
T Consensus 253 y~T-geEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 253 YNT-GEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred ccC-CceeeecccCCCCceEEEEECCCCcee
Confidence 999 7777775 8999999999999999753
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=9.3e-28 Score=181.40 Aligned_cols=203 Identities=20% Similarity=0.358 Sum_probs=150.1
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC-CEEEEEeCCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDG 86 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d~ 86 (270)
.++++++.||..+|.+++|+.+|..++|++.|+.|++||+++|+++..+... ..+.++.|.| ++ +.+++|+.|+
T Consensus 248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---~~~~cvkf~p--d~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD---KVPTCVKFHP--DNQNIFLVGGSDK 322 (503)
T ss_pred cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC---CCceeeecCC--CCCcEEEEecCCC
Confidence 4789999999999999999999999999999999999999999999998765 5589999999 65 7889999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccC-CccceecCCCCceEEEecc-------------------------
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREV------------------------- 140 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------------- 140 (270)
.|+.||+++++.++ ....+-.....+.+... .........+...+|+...
T Consensus 323 ki~~wDiRs~kvvq----eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~ 398 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQ----EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK 398 (503)
T ss_pred cEEEEeccchHHHH----HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC
Confidence 99999999997654 11111111111111110 1111111122222222111
Q ss_pred --------------------CceeeeccCCCCC------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCC
Q 024245 141 --------------------GETVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG 194 (270)
Q Consensus 141 --------------------~~~~~~~~~~~~~------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (270)
.......+.||.. +.|||||.+++ +|+.||.+.+||.++-+.+..++
T Consensus 399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~--SGdsdG~v~~wdwkt~kl~~~lk----- 471 (503)
T KOG0282|consen 399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC--SGDSDGKVNFWDWKTTKLVSKLK----- 471 (503)
T ss_pred eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE--eecCCccEEEeechhhhhhhccc-----
Confidence 1122335566655 89999998664 79999999999999999999998
Q ss_pred CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
+| ...|..+. |+|.++. .+||++-||.|++||
T Consensus 472 ---ah----~~~ci~v~-wHP~e~S---kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 472 ---AH----DQPCIGVD-WHPVEPS---KVATCGWDGLIKIWD 503 (503)
T ss_pred ---cC----CcceEEEE-ecCCCcc---eeEecccCceeEecC
Confidence 66 45788888 9997542 899999999999996
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.3e-27 Score=187.02 Aligned_cols=237 Identities=15% Similarity=0.188 Sum_probs=171.5
Q ss_pred ccccc-cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC----------------------------------------
Q 024245 11 VAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---------------------------------------- 49 (270)
Q Consensus 11 ~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~---------------------------------------- 49 (270)
.+.+. +|.++|++|.||+||+|||+|+.||.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 35566 8999999999999999999999999999998754
Q ss_pred --------------------CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245 50 --------------------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (270)
Q Consensus 50 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 109 (270)
.++++.|.+|. +.|..|.|+. + ++|++++.|++|++|++....+++ .+...
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt--~DILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~----~F~Hn 409 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHT--ADILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLK----VFSHN 409 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccc--hhheeccccc--C-CeeEeccccccEEeecCCCcceee----EEecC
Confidence 01123456787 4599999998 7 899999999999999999887755 55433
Q ss_pred cceEEEEeeccCCc--cceecCCCCceEEEeccCceeeeccCCCC-C-eEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245 110 SYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDSLCDS-K-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185 (270)
Q Consensus 110 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 185 (270)
..+.++.+.+..+ .....-.+..++|.+...+.+.+.-...- . ++|+|||++.++ |+.+|.+++|+....+..
T Consensus 410 -dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avI--Gt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 410 -DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVI--GTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred -CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEE--EEeccEEEEEEccCCeEE
Confidence 3333344433333 23333356677899988887765322211 1 999999997764 888999999999977765
Q ss_pred eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCC--CeeEEEeecC
Q 024245 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE--PGLECSMWRN 263 (270)
Q Consensus 186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~v~~~~~s~~ 263 (270)
..+.-.... +. ......++.++ |.|..++ .+++.+.|..|+|+|+++ ..++..|+|+.. .-...+|+.|
T Consensus 487 ~~~~I~~~~---~K-k~~~~rITG~Q-~~p~~~~---~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 487 SDFHIRLHN---KK-KKQGKRITGLQ-FFPGDPD---EVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSD 557 (712)
T ss_pred EeeeEeecc---Cc-cccCceeeeeE-ecCCCCC---eEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccC
Confidence 554411000 00 11122688888 8887554 577778899999999998 889999997653 3456889999
Q ss_pred CCcee
Q 024245 264 PITMS 268 (270)
Q Consensus 264 g~~ls 268 (270)
|++|-
T Consensus 558 gk~IV 562 (712)
T KOG0283|consen 558 GKHIV 562 (712)
T ss_pred CCEEE
Confidence 99874
No 53
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.7e-26 Score=184.94 Aligned_cols=219 Identities=19% Similarity=0.321 Sum_probs=176.1
Q ss_pred Ccccc-cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 9 DPVAV-LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 9 ~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
..+.. +.||.+.|++++|..-+.+|++|+.|.++++||..+|++...+.+|. +.|.++...+ .++++|+.|.+
T Consensus 239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~--stv~~~~~~~----~~~~sgs~D~t 312 (537)
T KOG0274|consen 239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT--SSVRCLTIDP----FLLVSGSRDNT 312 (537)
T ss_pred eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC--ceEEEEEccC----ceEeeccCCce
Confidence 34455 99999999999998878899999999999999999999999999998 6699998876 78999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCC-CeEE
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG-PKYM 164 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~-~~~~ 164 (270)
|++|++.++.++. .+.++...+.++.... +........+.+.+|++.+++.+. .+.+|.. .++..++ ..++
T Consensus 313 VkVW~v~n~~~l~----l~~~h~~~V~~v~~~~-~~lvsgs~d~~v~VW~~~~~~cl~-sl~gH~~~V~sl~~~~~~~~~ 386 (537)
T KOG0274|consen 313 VKVWDVTNGACLN----LLRGHTGPVNCVQLDE-PLLVSGSYDGTVKVWDPRTGKCLK-SLSGHTGRVYSLIVDSENRLL 386 (537)
T ss_pred EEEEeccCcceEE----EeccccccEEEEEecC-CEEEEEecCceEEEEEhhhceeee-eecCCcceEEEEEecCcceEE
Confidence 9999999987654 5555666677676663 333334444488899999776665 6667888 4445555 4443
Q ss_pred EEecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 165 AVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
+|+.|++|++||+++. +++.++. +|.. .+..+. +. ++ +|++++.|++|++||..+ ++
T Consensus 387 --Sgs~D~~IkvWdl~~~~~c~~tl~--------~h~~----~v~~l~-~~-----~~-~Lvs~~aD~~Ik~WD~~~-~~ 444 (537)
T KOG0274|consen 387 --SGSLDTTIKVWDLRTKRKCIHTLQ--------GHTS----LVSSLL-LR-----DN-FLVSSSADGTIKLWDAEE-GE 444 (537)
T ss_pred --eeeeccceEeecCCchhhhhhhhc--------CCcc----cccccc-cc-----cc-eeEeccccccEEEeeccc-Cc
Confidence 8999999999999999 8999998 6743 445544 33 22 999999999999999999 89
Q ss_pred ceeeeec-cCCCeeEEEee
Q 024245 244 PLTAMKV-HLEPGLECSMW 261 (270)
Q Consensus 244 ~~~~~~~-~~~~v~~~~~s 261 (270)
+++++.+ |...|..+++.
T Consensus 445 ~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 445 CLRTLEGRHVGGVSALALG 463 (537)
T ss_pred eeeeeccCCcccEEEeecC
Confidence 9999998 67888888876
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.8e-27 Score=173.56 Aligned_cols=211 Identities=17% Similarity=0.244 Sum_probs=152.5
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+..+++.||..+|..+.||||.++|++++.|..+.+||+.+|.+...+... ....+.+.+|.| ||..+++|+.|+++
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~p--Dg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCP--DGFRFVTGSPDRTI 336 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-cCCCcceeEEcc--CCceeEecCCCCcE
Confidence 568899999999999999999999999999999999999999998877644 226699999999 99999999999999
Q ss_pred EEEEccCCccCC-----CC-cccee----c---------------------------ccceEEEEeeccCCcc-ceecCC
Q 024245 89 KCWDIENGGLSS-----NP-SLTIK----T---------------------------NSYHFCKLSLVKEPYA-NAKQAN 130 (270)
Q Consensus 89 ~~wd~~~~~~~~-----~~-~~~~~----~---------------------------~~~~~~~~~~~~~~~~-~~~~~~ 130 (270)
..||++...... .| +..+. + ....+..+++...... ......
T Consensus 337 ~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 337 IMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred EEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence 999987543211 00 00000 0 0001111222211111 112223
Q ss_pred CCceEEEeccCceeeeccCCCCC------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCC
Q 024245 131 EPKDCYEREVGETVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR 204 (270)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~ 204 (270)
.....||++....++ .+.||.. -||.-....++ ++|++|+.|+||+..+++++.++. ||.
T Consensus 417 qei~LWDl~e~~lv~-kY~Ghkq~~fiIrSCFgg~~~~fi-aSGSED~kvyIWhr~sgkll~~Ls--------GHs---- 482 (519)
T KOG0293|consen 417 QEIHLWDLEENKLVR-KYFGHKQGHFIIRSCFGGGNDKFI-ASGSEDSKVYIWHRISGKLLAVLS--------GHS---- 482 (519)
T ss_pred CeeEEeecchhhHHH-HhhcccccceEEEeccCCCCcceE-EecCCCceEEEEEccCCceeEeec--------CCc----
Confidence 445667877444433 5556655 45554444455 489999999999999999999999 884
Q ss_pred ceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 205 ~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
..|.+++ |+|. +-. ++|+++.||+|+||-...
T Consensus 483 ~~vNcVs-wNP~--~p~-m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 483 KTVNCVS-WNPA--DPE-MFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceeeEEe-cCCC--CHH-HhhccCCCCeEEEecCCc
Confidence 5788888 9997 334 999999999999998764
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=2.5e-25 Score=191.57 Aligned_cols=226 Identities=14% Similarity=0.214 Sum_probs=163.8
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----c----eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----R----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
+..|.+.|++++|+|+|++||+|+.|+.|+|||+... . +...+..+ ..|.+++|++. .+.+|++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~~~~-~~~~las~~~D 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR---SKLSGICWNSY-IKSQVASSNFE 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc---CceeeEEeccC-CCCEEEEEeCC
Confidence 4458999999999999999999999999999997542 1 12223322 56999999874 46889999999
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccC--CccceecCCCCceEEEeccCceeeeccCCCCC---eEecC-C
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPA-E 159 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~-~ 159 (270)
|+|++||+.+++... .+..+...+..+.+... .........+.+.+|++..+..+... ..+.. +.|++ +
T Consensus 555 g~v~lWd~~~~~~~~----~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 555 GVVQVWDVARSQLVT----EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTKANICCVQFPSES 629 (793)
T ss_pred CeEEEEECCCCeEEE----EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCeEEEEEeCCC
Confidence 999999999876433 45555555544444321 12233344567788999877655433 23333 67754 5
Q ss_pred CCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
+. +++ +|+.|+.|++||+++.+ .+..+. +|. ..+.++. |.+ +. +|++++.|++|++||+
T Consensus 630 g~-~la-tgs~dg~I~iwD~~~~~~~~~~~~--------~h~----~~V~~v~-f~~----~~-~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 630 GR-SLA-FGSADHKVYYYDLRNPKLPLCTMI--------GHS----KTVSYVR-FVD----SS-TLVSSSTDNTLKLWDL 689 (793)
T ss_pred CC-EEE-EEeCCCeEEEEECCCCCccceEec--------CCC----CCEEEEE-EeC----CC-EEEEEECCCEEEEEeC
Confidence 55 444 57789999999998765 455666 663 3567777 863 33 8999999999999999
Q ss_pred CCC-----CcceeeeeccCCCeeEEEeecCCCcee
Q 024245 239 RNP-----GIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 239 ~~~-----~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+.. ..++..+.+|...++.++|+|++.+|.
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 852 357888999999999999999988764
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.6e-26 Score=159.91 Aligned_cols=186 Identities=17% Similarity=0.265 Sum_probs=146.5
Q ss_pred ccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 17 HRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 17 h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
-++.+..++|+++ ...+++++.||++++||+.. ..+++.++.|..+ |.++.|++. .+..++++|.|++|++|+..
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E--V~Svdwn~~-~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE--VYSVDWNTV-RRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh--eEEeccccc-cceeEEeeccCCceEeecCC
Confidence 3578999999994 45888999999999999643 4688889999844 999999996 44677888999999999998
Q ss_pred CCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceE
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i 174 (270)
..+.+. ++.++...+- . ..|+|....+++ +.+.|+++
T Consensus 136 r~~Sv~----Tf~gh~~~Iy--~------------------------------------a~~sp~~~nlfa-s~Sgd~~l 172 (311)
T KOG0277|consen 136 RPNSVQ----TFNGHNSCIY--Q------------------------------------AAFSPHIPNLFA-SASGDGTL 172 (311)
T ss_pred CCcceE----eecCCccEEE--E------------------------------------EecCCCCCCeEE-EccCCceE
Confidence 765433 4444332221 1 458888888887 45569999
Q ss_pred EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (270)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 254 (270)
++||++.......++ .|. ..+.++. |+.. +.. .|+||+.|+.|+.||+++...++..+.+|.-+
T Consensus 173 ~lwdvr~~gk~~~i~--------ah~----~Eil~cd-w~ky--~~~-vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 173 RLWDVRSPGKFMSIE--------AHN----SEILCCD-WSKY--NHN-VLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred EEEEecCCCceeEEE--------ecc----ceeEeec-cccc--CCc-EEEecCCCceEEEEehhhccccceeecCCceE
Confidence 999998765444576 663 3567776 8864 333 99999999999999999988999999999999
Q ss_pred eeEEEeecCC
Q 024245 255 GLECSMWRNP 264 (270)
Q Consensus 255 v~~~~~s~~g 264 (270)
|..+.|||..
T Consensus 237 VRkvk~Sph~ 246 (311)
T KOG0277|consen 237 VRKVKFSPHH 246 (311)
T ss_pred EEEEecCcch
Confidence 9999999954
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.6e-27 Score=172.53 Aligned_cols=182 Identities=15% Similarity=0.279 Sum_probs=148.5
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe--------ecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW--------VHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
|.++.+.|..|+|||.+|++|+.||-|.+||..+|+..+.++ .+. ++|.|+.|+. |...|++|+.||.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd--~aVlci~FSR--DsEMlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD--DAVLCISFSR--DSEMLASGSQDGK 286 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc--cceEEEeecc--cHHHhhccCcCCc
Confidence 456789999999999999999999999999999887665443 344 6799999999 9999999999999
Q ss_pred EEEEEccCCccCCCCcccee-cccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245 88 VKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 166 (270)
|++|.+++|.+++ .+. .+....++ +.||.|+..++
T Consensus 287 IKvWri~tG~ClR----rFdrAHtkGvt~--------------------------------------l~FSrD~SqiL-- 322 (508)
T KOG0275|consen 287 IKVWRIETGQCLR----RFDRAHTKGVTC--------------------------------------LSFSRDNSQIL-- 322 (508)
T ss_pred EEEEEEecchHHH----HhhhhhccCeeE--------------------------------------EEEccCcchhh--
Confidence 9999999998866 333 33333333 34888888776
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
+++.|.+++|..+.+|++++.+. ||.. .+.... |.++ |. .+++++.||+|++|+.++ .+++.
T Consensus 323 S~sfD~tvRiHGlKSGK~LKEfr--------GHsS----yvn~a~-ft~d---G~-~iisaSsDgtvkvW~~Kt-teC~~ 384 (508)
T KOG0275|consen 323 SASFDQTVRIHGLKSGKCLKEFR--------GHSS----YVNEAT-FTDD---GH-HIISASSDGTVKVWHGKT-TECLS 384 (508)
T ss_pred cccccceEEEeccccchhHHHhc--------Cccc----cccceE-EcCC---CC-eEEEecCCccEEEecCcc-hhhhh
Confidence 67889999999999999999999 8844 666666 9984 55 999999999999999999 88888
Q ss_pred eeecc--CCCeeEEEeecC
Q 024245 247 AMKVH--LEPGLECSMWRN 263 (270)
Q Consensus 247 ~~~~~--~~~v~~~~~s~~ 263 (270)
+++.. ..+|+++-.-|.
T Consensus 385 Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 385 TFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred hccCCCCcccceeEEEcCC
Confidence 88743 346777666553
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=9.2e-26 Score=166.03 Aligned_cols=200 Identities=20% Similarity=0.331 Sum_probs=155.7
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-------------------------CceeEEEeecCCCcc
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------------------------HRTVSSSWVHSAAHG 64 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~~~ 64 (270)
.++..+||+..|.+++..++|..+++|+.|.+|.||+... +.++-.+.+|. ++
T Consensus 185 ~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt--~~ 262 (423)
T KOG0313|consen 185 ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT--EP 262 (423)
T ss_pred HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc--cc
Confidence 3455569999999999999999999999999999999321 23455678888 77
Q ss_pred eEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC---CCceEEEeccC
Q 024245 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVG 141 (270)
Q Consensus 65 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 141 (270)
|.++.|++ . ..+++++.|.+|+.||++++.... .+.+.... .+++ ..+....++.+ ...++||.+.+
T Consensus 263 Vs~V~w~d--~-~v~yS~SwDHTIk~WDletg~~~~----~~~~~ksl-~~i~--~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 263 VSSVVWSD--A-TVIYSVSWDHTIKVWDLETGGLKS----TLTTNKSL-NCIS--YSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred eeeEEEcC--C-CceEeecccceEEEEEeeccccee----eeecCcce-eEee--cccccceeeecCCCCceeecCCCCC
Confidence 99999998 5 789999999999999999997643 33333222 2222 23333333333 34566777654
Q ss_pred --ceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecC
Q 024245 142 --ETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL 214 (270)
Q Consensus 142 --~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 214 (270)
..+...+.+|.+ +.|+|...++|+ +++.|+++++||+|+.. +++.+. +| ...++++. |+
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~-S~S~D~t~klWDvRS~k~plydI~--------~h----~DKvl~vd-W~ 398 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLV-SGSYDNTVKLWDVRSTKAPLYDIA--------GH----NDKVLSVD-WN 398 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEE-EEecCCeEEEEEeccCCCcceeec--------cC----CceEEEEe-cc
Confidence 477789999999 899999998876 78899999999999888 999998 77 45788888 98
Q ss_pred CCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 215 PSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 215 p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
++. ++++|+.|.+|+++.-..
T Consensus 399 ----~~~-~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 399 ----EGG-LIVSGGADNKLRIFKGSP 419 (423)
T ss_pred ----CCc-eEEeccCcceEEEecccc
Confidence 344 899999999999987543
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.4e-25 Score=156.35 Aligned_cols=181 Identities=14% Similarity=0.201 Sum_probs=141.7
Q ss_pred ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
.+|+..|++++|+|.|++||+||.|.++.||.-..+ +++.++.+|..+ |.+++|++ +|++|++++.|+.|-+|.
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~--sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE--VKCVAWSA--SGNYLATCSRDKSVWIWE 133 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc--eeEEEEcC--CCCEEEEeeCCCeEEEEE
Confidence 369999999999999999999999999999987644 788899999954 99999999 999999999999999999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEec
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG 168 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~ 168 (270)
+..+.... +.+ .+++|.. +.|+|... +|+ ++
T Consensus 134 ~deddEfe--------------c~a-----------------------------VL~~HtqDVK~V~WHPt~d-lL~-S~ 168 (312)
T KOG0645|consen 134 IDEDDEFE--------------CIA-----------------------------VLQEHTQDVKHVIWHPTED-LLF-SC 168 (312)
T ss_pred ecCCCcEE--------------EEe-----------------------------eeccccccccEEEEcCCcc-eeE-Ee
Confidence 87543211 011 2233333 67999876 333 78
Q ss_pred CCCceEEEEeCCC---cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 169 EQLSEVEIWDLNT---AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 169 ~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
++|.+|++|+-.. -++.+++. +|. ..++++. |+|. |. .|++++.|++|+||.+.+ .-
T Consensus 169 SYDnTIk~~~~~~dddW~c~~tl~--------g~~----~TVW~~~-F~~~---G~-rl~s~sdD~tv~Iw~~~~-~~-- 228 (312)
T KOG0645|consen 169 SYDNTIKVYRDEDDDDWECVQTLD--------GHE----NTVWSLA-FDNI---GS-RLVSCSDDGTVSIWRLYT-DL-- 228 (312)
T ss_pred ccCCeEEEEeecCCCCeeEEEEec--------Ccc----ceEEEEE-ecCC---Cc-eEEEecCCcceEeeeecc-Cc--
Confidence 8999999998762 34788888 663 3899998 9985 44 899999999999999764 11
Q ss_pred eeeeccCCCeeEEEeecCCCce
Q 024245 246 TAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 246 ~~~~~~~~~v~~~~~s~~g~~l 267 (270)
-..|+.+++.++|. +|..-
T Consensus 229 --~~~~sr~~Y~v~W~-~~~Ia 247 (312)
T KOG0645|consen 229 --SGMHSRALYDVPWD-NGVIA 247 (312)
T ss_pred --chhcccceEeeeec-ccceE
Confidence 12367788888888 55443
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=6.1e-25 Score=189.16 Aligned_cols=223 Identities=16% Similarity=0.237 Sum_probs=161.0
Q ss_pred ccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 17 h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
+...|.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|. ..|++++|+|. ++.+|++|+.|++|++||+++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~--~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHE--KRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCC--CCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCC
Confidence 346899999998 57899999999999999999999999998888 66999999963 568999999999999999998
Q ss_pred CccCCCCccceecccceEEEEeecc--CCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecC
Q 024245 96 GGLSSNPSLTIKTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE 169 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~ 169 (270)
+.... .+... .....+.+.. ..........+...+||+...+.....+.+|.. +.|. ++..++ +++
T Consensus 608 ~~~~~----~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv--s~s 679 (793)
T PLN00181 608 GVSIG----TIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV--SSS 679 (793)
T ss_pred CcEEE----EEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE--EEE
Confidence 75433 33322 2222222211 112223334556778998876654455667766 7776 555443 566
Q ss_pred CCceEEEEeCCCc------ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 170 QLSEVEIWDLNTA------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 170 ~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
.|++|+|||++.+ .++..+. +|.. .+..+. |+|+ +. +|++|+.||.|++|+... ..
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~--------gh~~----~i~~v~-~s~~---~~-~lasgs~D~~v~iw~~~~-~~ 741 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFM--------GHTN----VKNFVG-LSVS---DG-YIATGSETNEVFVYHKAF-PM 741 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEc--------CCCC----CeeEEE-EcCC---CC-EEEEEeCCCEEEEEECCC-CC
Confidence 7999999999753 4566776 6743 455666 9985 44 999999999999999876 33
Q ss_pred ceeee-------------eccCCCeeEEEeecCCCcee
Q 024245 244 PLTAM-------------KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 244 ~~~~~-------------~~~~~~v~~~~~s~~g~~ls 268 (270)
++..+ ..+...|.+++|+|++.+|.
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lv 779 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLV 779 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEE
Confidence 33221 23456799999999997763
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=5.6e-26 Score=163.50 Aligned_cols=217 Identities=13% Similarity=0.214 Sum_probs=160.7
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC------------C------ceeEEEeecCCCcceEEEEEee
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------H------RTVSSSWVHSAAHGIVSVATGP 72 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~~~v~~~~~~~ 72 (270)
-..+..|++++++.+|++||.++|+|+.|..|+|.|++. + -.++++-.|. +.|+++.|+|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~--devn~l~FHP 182 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV--DEVNDLDFHP 182 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc--Ccccceeecc
Confidence 345678999999999999999999999999999999972 1 2345666677 6699999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeecc--C
Q 024245 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDS--L 149 (270)
Q Consensus 73 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~ 149 (270)
....|++++.|++|++||+......+ .+..-........+++........... -...++||+.+.++..... .
T Consensus 183 --re~ILiS~srD~tvKlFDfsK~saKr--A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 183 --RETILISGSRDNTVKLFDFSKTSAKR--AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred --hhheEEeccCCCeEEEEecccHHHHH--HHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 77899999999999999997654332 111111222333444444333333322 2346778988887665433 3
Q ss_pred CCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245 150 CDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (270)
Q Consensus 150 ~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (270)
.|.. +.+++.|+ +++ +++.||.|+|||--+++++.++.. +|. ...+.+.. |.. +|+ |++
T Consensus 259 qht~ai~~V~Ys~t~~-lYv-TaSkDG~IklwDGVS~rCv~t~~~-------AH~---gsevcSa~-Ftk---n~k-yiL 321 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGS-LYV-TASKDGAIKLWDGVSNRCVRTIGN-------AHG---GSEVCSAV-FTK---NGK-YIL 321 (430)
T ss_pred ccccceeEEEecCCcc-EEE-EeccCCcEEeeccccHHHHHHHHh-------hcC---CceeeeEE-Ecc---CCe-EEe
Confidence 3443 88999997 333 799999999999999999999986 673 34566666 987 566 999
Q ss_pred EecCCCcEEEEEcCCCCcceeeeecc
Q 024245 226 AGYEDGSILVWDIRNPGIPLTAMKVH 251 (270)
Q Consensus 226 ~~~~dg~i~vwd~~~~~~~~~~~~~~ 251 (270)
+.+.|..+++|.+.+ ++++..+.|-
T Consensus 322 sSG~DS~vkLWEi~t-~R~l~~YtGA 346 (430)
T KOG0640|consen 322 SSGKDSTVKLWEIST-GRMLKEYTGA 346 (430)
T ss_pred ecCCcceeeeeeecC-CceEEEEecC
Confidence 999999999999999 8888777653
No 62
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=6.3e-25 Score=154.28 Aligned_cols=224 Identities=12% Similarity=0.183 Sum_probs=172.1
Q ss_pred ccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
.++||.+.|-.++|+| ...++++++.|.+|++||++.++++..+..... -.-+.|+| +|++++.++.|..|...
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e---ni~i~wsp--~g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE---NINITWSP--DGEYIAVGNKDDRITFI 133 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc---ceEEEEcC--CCCEEEEecCcccEEEE
Confidence 4678999999999999 566999999999999999999999998876653 35689999 99999999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCC-CCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV 166 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~ 166 (270)
|.++.+......+. .....+.........++..| +.+.+......+.+ ..+.+|.. +.|+|+|+++.
T Consensus 134 d~r~~~~~~~~~~~-----~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv-~si~AH~snCicI~f~p~GryfA-- 205 (313)
T KOG1407|consen 134 DARTYKIVNEEQFK-----FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV-QSIKAHPSNCICIEFDPDGRYFA-- 205 (313)
T ss_pred Eecccceeehhccc-----ceeeeeeecCCCCEEEEecCCceEEEEeccccccc-cccccCCcceEEEEECCCCceEe--
Confidence 99987654411111 11222333334444444444 45555555543333 35667776 89999998764
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
+|+.|..+.+||+...-+++.+. .+.- .+..+. |+. ||+ +||+|++|..|-|=++++ |..+.
T Consensus 206 ~GsADAlvSLWD~~ELiC~R~is--------Rldw----pVRTlS-FS~---dg~-~lASaSEDh~IDIA~vet-Gd~~~ 267 (313)
T KOG1407|consen 206 TGSADALVSLWDVDELICERCIS--------RLDW----PVRTLS-FSH---DGR-MLASASEDHFIDIAEVET-GDRVW 267 (313)
T ss_pred eccccceeeccChhHhhhheeec--------cccC----ceEEEE-ecc---Ccc-eeeccCccceEEeEeccc-CCeEE
Confidence 68889999999999888888888 4433 455565 987 566 999999999999999999 78788
Q ss_pred eeeccCCCeeEEEeecCCCcee
Q 024245 247 AMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.++ +.++...++|+|...+|.
T Consensus 268 eI~-~~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 268 EIP-CEGPTFTVAWHPKRPLLA 288 (313)
T ss_pred Eee-ccCCceeEEecCCCceee
Confidence 887 688999999999987764
No 63
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=2.9e-24 Score=164.35 Aligned_cols=232 Identities=20% Similarity=0.286 Sum_probs=167.3
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee--EEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
|.....+.+|...++-..|+|.|.|+|+|...|+|+|||....+.+ .+++.-. ++|..|+|+. ++++|++.++.
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a--G~I~Di~Wd~--ds~RI~avGEG 124 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA--GPIKDISWDF--DSKRIAAVGEG 124 (603)
T ss_pred ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc--cccccceeCC--CCcEEEEEecC
Confidence 3456778899999999999999999999999999999998764332 3444444 7799999999 99999877653
Q ss_pred ----CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCce--eeeccCCCCC----eE
Q 024245 86 ----GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VDTDSLCDSK----DD 155 (270)
Q Consensus 86 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~ 155 (270)
|.+.+||- +... -.+.++........+...... .+.+++.+....+..+.. ....+..|.. +.
T Consensus 125 rerfg~~F~~DS--G~Sv----Gei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 125 RERFGHVFLWDS--GNSV----GEITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR 197 (603)
T ss_pred ccceeEEEEecC--CCcc----ceeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence 24555654 4332 255555555544444333322 234444555555444433 3345566666 89
Q ss_pred ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
|+|||..+ +++| .||.|.+||-.+++.+..+.. .....+.++++. |+|++ . .++|++.|.+++|
T Consensus 198 ysPDG~~F-at~g-sDgki~iyDGktge~vg~l~~---------~~aHkGsIfals-WsPDs---~-~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 198 YSPDGSRF-ATAG-SDGKIYIYDGKTGEKVGELED---------SDAHKGSIFALS-WSPDS---T-QFLTVSADKTIKI 261 (603)
T ss_pred ECCCCCeE-EEec-CCccEEEEcCCCccEEEEecC---------CCCccccEEEEE-ECCCC---c-eEEEecCCceEEE
Confidence 99999754 4445 599999999999999999983 223477899998 99964 4 8999999999999
Q ss_pred EEcCCCCc-------------------------------------------ceeeeeccCCCeeEEEeecCCCce
Q 024245 236 WDIRNPGI-------------------------------------------PLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 236 wd~~~~~~-------------------------------------------~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
||+.+ .+ ++..+.||...|+++..+||+++|
T Consensus 262 WdVs~-~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 262 WDVST-NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred EEeec-cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 99876 22 234567888999999999988775
No 64
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=7.4e-25 Score=176.32 Aligned_cols=193 Identities=17% Similarity=0.211 Sum_probs=140.8
Q ss_pred CcccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
+++..+.+|...|.+++|+|++ .+|++|+.|+.|+|||+.+++.+..+..|. ..|.+++|+| ++++|++++.|++
T Consensus 116 ~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~--~~V~sla~sp--dG~lLatgs~Dg~ 191 (493)
T PTZ00421 116 DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS--DQITSLEWNL--DGSLLCTTSKDKK 191 (493)
T ss_pred cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC--CceEEEEEEC--CCCEEEEecCCCE
Confidence 4678899999999999999975 699999999999999999999988888888 6699999999 9999999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 167 (270)
|++||+++++... .+..+..... .. +.|.+++..++. +
T Consensus 192 IrIwD~rsg~~v~----tl~~H~~~~~-~~------------------------------------~~w~~~~~~ivt-~ 229 (493)
T PTZ00421 192 LNIIDPRDGTIVS----SVEAHASAKS-QR------------------------------------CLWAKRKDLIIT-L 229 (493)
T ss_pred EEEEECCCCcEEE----EEecCCCCcc-eE------------------------------------EEEcCCCCeEEE-E
Confidence 9999999875422 2322221100 00 336677665553 3
Q ss_pred c---CCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCCcEEEEEcCCCC
Q 024245 168 G---EQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPG 242 (270)
Q Consensus 168 ~---~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~i~vwd~~~~~ 242 (270)
| +.|+.|++||+++.. ++.... .+ ....+.... |+|+ +. +|++|+ .|+.|++||+.+ +
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~--------~d---~~~~~~~~~-~d~d---~~-~L~lggkgDg~Iriwdl~~-~ 292 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVD--------LD---QSSALFIPF-FDED---TN-LLYIGSKGEGNIRCFELMN-E 292 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEec--------cC---CCCceEEEE-EcCC---CC-EEEEEEeCCCeEEEEEeeC-C
Confidence 3 358999999998755 333332 11 112333344 8874 44 666666 699999999998 6
Q ss_pred cceeeeec-cCCCeeEEEeecCC
Q 024245 243 IPLTAMKV-HLEPGLECSMWRNP 264 (270)
Q Consensus 243 ~~~~~~~~-~~~~v~~~~~s~~g 264 (270)
+++..... +..++..++|.|..
T Consensus 293 ~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 293 RLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred ceEEEeeccCCCCCcceEecccc
Confidence 76665543 34577888888853
No 65
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.6e-25 Score=157.49 Aligned_cols=231 Identities=19% Similarity=0.249 Sum_probs=166.8
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
+....|.++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..|. ++|..+.|-+...-..|+|||.|++|+.|
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecc--cceeEEEEecCCCcceeEecccccceeec
Confidence 4456689999999999999999999999999999999984 44667788 77999999983223389999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeecc-CCccceecCCCCceEEEeccCceeeeccCCCCC-----eEecCCCCeEEE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMA 165 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~ 165 (270)
|.+....+ .++.-. ....+.+. .+.......+..+.+++++++..........-. ++...+.+..++
T Consensus 143 D~R~~~pv----~t~~LP---eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al 215 (347)
T KOG0647|consen 143 DTRSSNPV----ATLQLP---ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL 215 (347)
T ss_pred ccCCCCee----eeeecc---ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe
Confidence 99976432 222211 11222222 233444555666677888666544333322222 666677665543
Q ss_pred EecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccC--C---CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 166 VAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSK--G---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~--~---~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
|+-.|.+.|..+..+. .-.+|+ .|... . --.+.+++ |+|. .| .|+|++.||++.+||-
T Consensus 216 --GsiEGrv~iq~id~~~~~~nFtFk--------CHR~~~~~~~~VYaVNsi~-FhP~--hg--tlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 216 --GSIEGRVAIQYIDDPNPKDNFTFK--------CHRSTNSVNDDVYAVNSIA-FHPV--HG--TLVTAGSDGTFSFWDK 280 (347)
T ss_pred --eeecceEEEEecCCCCccCceeEE--------EeccCCCCCCceEEecceE-eecc--cc--eEEEecCCceEEEecc
Confidence 6778999999988763 334444 35421 1 22466787 9996 34 8999999999999999
Q ss_pred CCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 239 RNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.. ...+...+.|..+|++.+|+.+|.++.
T Consensus 281 da-r~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 281 DA-RTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred hh-hhhhhccCcCCCccceeEecCCCCEEE
Confidence 88 777888888999999999999998763
No 66
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=4.6e-25 Score=174.78 Aligned_cols=234 Identities=15% Similarity=0.160 Sum_probs=179.9
Q ss_pred CcccccccccccEEEEEEe-CCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 9 DPVAVLRGHRASVTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
++.+.+-|..+.|.+|+|- |+.++||.++..+.+++|++.+..+. .+.+|. +.|.++.... .|.+|+||+.|.+
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~--e~vlSL~~~~--~g~llat~sKD~s 388 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT--EAVLSLDVWS--SGDLLATGSKDKS 388 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch--hheeeeeecc--cCcEEEEecCCce
Confidence 4566778888999999986 47789999999999999999877776 888998 6799999555 5679999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeec--cCCccceecCCCCceEEEeccCce----ee----eccCCCCC----
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV--KEPYANAKQANEPKDCYEREVGET----VD----TDSLCDSK---- 153 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~---- 153 (270)
+++|.++++.....++....++......+... ..+............+|++...+. +. .....|..
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 99999966654444444555555544444442 222223333344556687765221 11 12344555
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
++++|+.+ ++ ++|+.|.+.+||+++..+...++. || +..++++. |+|. .+ .++|+|.|++|
T Consensus 469 Vaia~ndk-Li-AT~SqDktaKiW~le~~~l~~vLs--------GH----~RGvw~V~-Fs~~---dq-~laT~SgD~Tv 529 (775)
T KOG0319|consen 469 VAIAPNDK-LI-ATGSQDKTAKIWDLEQLRLLGVLS--------GH----TRGVWCVS-FSKN---DQ-LLATCSGDKTV 529 (775)
T ss_pred eEecCCCc-eE-EecccccceeeecccCceEEEEee--------CC----ccceEEEE-eccc---cc-eeEeccCCceE
Confidence 89999986 44 589999999999999999999999 88 44689998 9995 34 99999999999
Q ss_pred EEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+||.+.+ ..++.++.||...|..++|-.+|+.|
T Consensus 530 KIW~is~-fSClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 530 KIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred EEEEecc-ceeeeeecCccceeEeeeeeeCCcEE
Confidence 9999999 99999999999999999999988665
No 67
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.2e-25 Score=167.38 Aligned_cols=198 Identities=20% Similarity=0.264 Sum_probs=153.7
Q ss_pred CcccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCc-------eeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
+|-..|.||++.=++|+|++.. -.|++|+.|+.|++||+.... +...+.+|. +.|..++|++.+. ++|+
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--~~VeDV~~h~~h~-~lF~ 244 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE--DVVEDVAWHPLHE-DLFG 244 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC--cceehhhccccch-hhhe
Confidence 3445799999988999999943 489999999999999997532 345667787 7799999999744 8899
Q ss_pred EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 160 (270)
+++.|+.+.|||++++ ..++....+.+.....+ ++|+|-+
T Consensus 245 sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~--------------------------------------~~fnp~~ 284 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNC--------------------------------------VAFNPFN 284 (422)
T ss_pred eecCCCeEEEEEcCCC--CCCCcccccccCCceeE--------------------------------------EEeCCCC
Confidence 9999999999999974 22333344444333322 4588888
Q ss_pred CeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
.+++| +|+.|++|.+||+|... ++.++. +| ...+..+. |+|. ... .||+++.|+.+.|||+.
T Consensus 285 ~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e--------~H----~dev~~V~-WSPh--~et-vLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 285 EFILA-TGSADKTVALWDLRNLNKPLHTFE--------GH----EDEVFQVE-WSPH--NET-VLASSGTDRRLNVWDLS 347 (422)
T ss_pred CceEE-eccCCCcEEEeechhcccCceecc--------CC----CcceEEEE-eCCC--CCc-eeEecccCCcEEEEecc
Confidence 87776 78889999999999754 677777 67 45788998 9996 333 99999999999999987
Q ss_pred CCCc-------------ceeeeeccCCCeeEEEeecCCCc
Q 024245 240 NPGI-------------PLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 240 ~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
..++ ++....||...|..+.|+|+...
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence 6433 34666799999999999997654
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=165.88 Aligned_cols=197 Identities=19% Similarity=0.342 Sum_probs=160.6
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+.+.+|+||...|+.+.|+|+...+++++.|..|+||.............|. .+|+.+..+| .|.+|++++.|++
T Consensus 251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~--~~V~~ls~h~--tgeYllsAs~d~~ 326 (506)
T KOG0289|consen 251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHE--EPVTGLSLHP--TGEYLLSASNDGT 326 (506)
T ss_pred hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccc--ccceeeeecc--CCcEEEEecCCce
Confidence 46789999999999999999999999999999999999998888777888888 7799999999 9999999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 167 (270)
..+.|++++.... ..... ...+.+.. .+|+|||- ++.+
T Consensus 327 w~Fsd~~~g~~lt----~vs~~-~s~v~~ts-----------------------------------~~fHpDgL--ifgt 364 (506)
T KOG0289|consen 327 WAFSDISSGSQLT----VVSDE-TSDVEYTS-----------------------------------AAFHPDGL--IFGT 364 (506)
T ss_pred EEEEEccCCcEEE----EEeec-cccceeEE-----------------------------------eeEcCCce--EEec
Confidence 9999999987533 11111 01010110 45999994 4458
Q ss_pred cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee
Q 024245 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~ 247 (270)
|..|+.|+|||+.++..+..|. +|. +.+.+++ |+. +|. +|+++.+|+.|++||+|. -+.+.+
T Consensus 365 gt~d~~vkiwdlks~~~~a~Fp--------ght----~~vk~i~-FsE---NGY-~Lat~add~~V~lwDLRK-l~n~kt 426 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAKFP--------GHT----GPVKAIS-FSE---NGY-WLATAADDGSVKLWDLRK-LKNFKT 426 (506)
T ss_pred cCCCceEEEEEcCCccccccCC--------CCC----CceeEEE-ecc---Cce-EEEEEecCCeEEEEEehh-hcccce
Confidence 9999999999999999888998 774 4677787 996 565 999999999999999998 566666
Q ss_pred eecc-CCCeeEEEeecCCCcee
Q 024245 248 MKVH-LEPGLECSMWRNPITMS 268 (270)
Q Consensus 248 ~~~~-~~~v~~~~~s~~g~~ls 268 (270)
+.-. ...|.++.|.+.|.+|-
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred eeccccccceeEEEcCCCCeEE
Confidence 6532 24699999999999874
No 69
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.1e-26 Score=183.65 Aligned_cols=193 Identities=21% Similarity=0.354 Sum_probs=162.1
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.++-.|.+|+.+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|. ..+.++.|+| -+.++++++.|..+
T Consensus 61 ~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~--~~~~sv~f~P--~~~~~a~gStdtd~ 136 (825)
T KOG0267|consen 61 NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL--LNITSVDFHP--YGEFFASGSTDTDL 136 (825)
T ss_pred chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc--cCcceeeecc--ceEEeccccccccc
Confidence 4566689999999999999999999999999999999999999999999999 5699999999 88999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 168 (270)
++||++...+.. ...++...... +.|+|+|.++. .|
T Consensus 137 ~iwD~Rk~Gc~~----~~~s~~~vv~~--------------------------------------l~lsP~Gr~v~--~g 172 (825)
T KOG0267|consen 137 KIWDIRKKGCSH----TYKSHTRVVDV--------------------------------------LRLSPDGRWVA--SG 172 (825)
T ss_pred eehhhhccCcee----eecCCcceeEE--------------------------------------EeecCCCceee--cc
Confidence 999999765533 33332211111 45999997443 67
Q ss_pred CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
++|.+++|||+..|+.+..|+ +| .+.+.++. |+|.+- ++++|+.|++|++||+++ .+.+...
T Consensus 173 ~ed~tvki~d~~agk~~~ef~--------~~----e~~v~sle-~hp~e~----Lla~Gs~d~tv~f~dlet-fe~I~s~ 234 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFK--------SH----EGKVQSLE-FHPLEV----LLAPGSSDRTVRFWDLET-FEVISSG 234 (825)
T ss_pred CCcceeeeecccccccccccc--------cc----cccccccc-cCchhh----hhccCCCCceeeeeccce-eEEeecc
Confidence 789999999999999999999 66 44667777 998643 999999999999999998 7777777
Q ss_pred eccCCCeeEEEeecCCCce
Q 024245 249 KVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 249 ~~~~~~v~~~~~s~~g~~l 267 (270)
+.....|.+.+|+|+++.+
T Consensus 235 ~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred CCccCCceeeeecCCceee
Confidence 7778899999999998754
No 70
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=1.2e-24 Score=155.69 Aligned_cols=198 Identities=18% Similarity=0.209 Sum_probs=140.7
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
.-+++||.++|..+.|.+|+..+++++.|.+|+.||+++|++++.+++|. .-|+++.-+.. +..++.|++.|+++++
T Consensus 83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~--~~vNs~~p~rr-g~~lv~SgsdD~t~kl 159 (338)
T KOG0265|consen 83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT--SFVNSLDPSRR-GPQLVCSGSDDGTLKL 159 (338)
T ss_pred eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc--ceeeecCcccc-CCeEEEecCCCceEEE
Confidence 45678999999999999999999999999999999999999999999998 66888884442 3356679999999999
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCccceecC-----------------------------------------
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA----------------------------------------- 129 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 129 (270)
||+++....+...... . ..++.+.....-...
T Consensus 160 ~D~R~k~~~~t~~~ky-----q--ltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 160 WDIRKKEAIKTFENKY-----Q--LTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred Eeecccchhhccccce-----e--EEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccc
Confidence 9999876554211010 1 111111111111111
Q ss_pred ----CCCceEEEeccC---ceeeeccCCCCC--------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCC
Q 024245 130 ----NEPKDCYEREVG---ETVDTDSLCDSK--------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG 194 (270)
Q Consensus 130 ----~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (270)
.....+|+++.. +.....+.+|.. .+|+|++..+ .+|+.|..+++||......++.+.
T Consensus 233 snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i--~ags~dr~vyvwd~~~r~~lyklp----- 305 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKI--TAGSADRFVYVWDTTSRRILYKLP----- 305 (338)
T ss_pred cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcc--ccccccceEEEeecccccEEEEcC-----
Confidence 112233444322 121223444433 7888988754 357788999999998888888888
Q ss_pred CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
|| .+.+..++ |+|.++ +|.+++.|.+|++=.
T Consensus 306 ---Gh----~gsvn~~~-Fhp~e~----iils~~sdk~i~lge 336 (338)
T KOG0265|consen 306 ---GH----YGSVNEVD-FHPTEP----IILSCSSDKTIYLGE 336 (338)
T ss_pred ---Cc----ceeEEEee-ecCCCc----EEEEeccCceeEeec
Confidence 77 56889998 999876 999999999998743
No 71
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=1.6e-24 Score=158.70 Aligned_cols=212 Identities=19% Similarity=0.279 Sum_probs=165.7
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+.++.+.||-+.|.|++.+|.-..|++|++|.+++|||+++...+..+.+|. .+|..+.+.| -...+++||.|++
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~--~~V~~V~~~~--~dpqvit~S~D~t 300 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT--NPVASVMCQP--TDPQVITGSHDST 300 (460)
T ss_pred hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC--CcceeEEeec--CCCceEEecCCce
Confidence 36788999999999999999999999999999999999999999999999999 6699999998 5578999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
|++||+..++.. .++..+.....++...........+.......|++..+..+.. +.+|.. ++...|| +
T Consensus 301 vrlWDl~agkt~----~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n-lsgh~~iintl~~nsD~--v 373 (460)
T KOG0285|consen 301 VRLWDLRAGKTM----ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDG--V 373 (460)
T ss_pred EEEeeeccCcee----EeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc-cccccceeeeeeeccCc--e
Confidence 999999998653 3666677777767666655555666666677788888877665 778877 4555555 3
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
++ +|+++|.+.+||.+++...+.++..... |-- ..+..+++.+ |...+. .|++|..|.+|++|.-..
T Consensus 374 ~~-~G~dng~~~fwdwksg~nyQ~~~t~vqp---GSl-~sEagI~as~-fDktg~----rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 374 LV-SGGDNGSIMFWDWKSGHNYQRGQTIVQP---GSL-ESEAGIFASC-FDKTGS----RLITGEADKTIKMYKEDE 440 (460)
T ss_pred EE-EcCCceEEEEEecCcCcccccccccccC---Ccc-ccccceeEEe-ecccCc----eEEeccCCcceEEEeccc
Confidence 43 6888999999999998766655321111 111 1233456665 886533 899999999999998654
No 72
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-25 Score=178.18 Aligned_cols=219 Identities=19% Similarity=0.282 Sum_probs=171.3
Q ss_pred cEEEEEEeC-CCCEEEEecCCCcEEEEeCCC---CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 20 SVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 20 ~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
.+..+.|+. +.++||+++..|.|.+||+.. .+.+..|..|. ..+.++.|++. ..++|++||+||+|++||++.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~--Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE--RSANKLDFHST-EPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhc--cceeeeeeccC-CccEEEecCCCceEEEEeeec
Confidence 456677876 567999999999999999987 56666788888 66999999986 458999999999999999998
Q ss_pred CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d 171 (270)
.+... .+.-.........+++...........++....||++........+.+|.+ +.|+|++. ++ ++|+.|
T Consensus 166 ~~S~~--t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~l-ATGGRD 241 (839)
T KOG0269|consen 166 KKSKS--TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WL-ATGGRD 241 (839)
T ss_pred ccccc--cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-ee-eecCCC
Confidence 76543 222222333444555555555566777889999999999988889999999 78999765 44 478899
Q ss_pred ceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC--CCcEEEEEcCCCCcceee
Q 024245 172 SEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--DGSILVWDIRNPGIPLTA 247 (270)
Q Consensus 172 ~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~--dg~i~vwd~~~~~~~~~~ 247 (270)
+.|+|||+.+++. +.++. ....+.++. |-|.. ++.|++++. |-.|+|||++.+.-|..+
T Consensus 242 K~vkiWd~t~~~~~~~~tIn-------------Tiapv~rVk-WRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTIN-------------TIAPVGRVK-WRPAR---SYHLATCSMVVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred ccEEEEeccCCCccceeEEe-------------ecceeeeee-eccCc---cchhhhhhccccceEEEEeecccccccee
Confidence 9999999987653 33333 234677887 99963 347888864 668999999998899999
Q ss_pred eeccCCCeeEEEeec
Q 024245 248 MKVHLEPGLECSMWR 262 (270)
Q Consensus 248 ~~~~~~~v~~~~~s~ 262 (270)
+..|...++.++|..
T Consensus 305 ~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWDS 319 (839)
T ss_pred eeccCccccceeccC
Confidence 999999999999976
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.1e-24 Score=177.64 Aligned_cols=236 Identities=17% Similarity=0.211 Sum_probs=170.6
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC------------------CceeEEEeecCCCcceEEEE
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------------HRTVSSSWVHSAAHGIVSVA 69 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~~~v~~~~ 69 (270)
|+.+.+...|.+.|+|+.|+|||++||+|+.|+.|.||+... .+.+..+.+|. ..|..++
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~--~DV~Dv~ 136 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD--SDVLDVN 136 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC--Cccceec
Confidence 477888999999999999999999999999999999999772 13567788898 4499999
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCc---eEEEeccCcee--
Q 024245 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK---DCYEREVGETV-- 144 (270)
Q Consensus 70 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-- 144 (270)
|+| ++.+|++++.|++|.+||..+.+... .+.++......+.++ +.+.+++..+.+ .+|.+.+....
T Consensus 137 Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~----vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 137 WSP--DDSLLVSVSLDNSVIIWNAKTFELLK----VLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred cCC--CccEEEEecccceEEEEccccceeee----eeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEe
Confidence 999 99999999999999999999986544 666666655544443 444455544444 44654442222
Q ss_pred -eeccCCCCC------eEecCCCCeEEEEecCC--CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245 145 -DTDSLCDSK------DDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (270)
Q Consensus 145 -~~~~~~~~~------~~~s~~~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p 215 (270)
...+..-.. +.|||||.++...-+-. -.++.|.+..+-+.-..|- ||.. .+.++. |+|
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv--------GH~~----p~evvr-FnP 275 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV--------GHSA----PVEVVR-FNP 275 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee--------cCCC----ceEEEE-eCh
Confidence 222221111 89999999776432221 2468888887777677777 7844 566666 988
Q ss_pred C-----CCCC-------c-eEEEEecCCCcEEEEEcCCCCcceeeee-ccCCCeeEEEeecCCCce
Q 024245 216 S-----KSQG-------F-VNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPGLECSMWRNPITM 267 (270)
Q Consensus 216 ~-----~~~g-------~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l 267 (270)
. ..+| . ..+|+|+.|++|.||.... .+|+.... -....|.+++|+|||..|
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcCceeeeeEcCCCCeE
Confidence 4 1111 1 1689999999999999987 56655443 346789999999999765
No 74
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.1e-24 Score=155.73 Aligned_cols=192 Identities=19% Similarity=0.280 Sum_probs=143.8
Q ss_pred cccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCc------------ee---EEEeecCCCcceEEEEEeeCCCCC
Q 024245 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR------------TV---SSSWVHSAAHGIVSVATGPSIGLN 77 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~------------~~---~~~~~~~~~~~v~~~~~~~~~~~~ 77 (270)
.+-|.+.|+++...+ .|+++++|+.||.|.|||+++-. ++ ..-.+|. -.|..+.|.|. |..
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk--y~iss~~WyP~-DtG 115 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK--YAISSAIWYPI-DTG 115 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce--eeeeeeEEeee-cCc
Confidence 446899999999998 89999999999999999997632 10 0012344 66999999997 557
Q ss_pred EEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEec
Q 024245 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (270)
Q Consensus 78 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 157 (270)
.+.+++.|.++++||.++.+... .+.+++.-+. -++|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~--~F~me~~VYs-----------------------------------------hamS 152 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV--DFKMEGKVYS-----------------------------------------HAMS 152 (397)
T ss_pred eeecccccceEEEeecccceeeE--EeecCceeeh-----------------------------------------hhcC
Confidence 88899999999999999875432 2222221111 1133
Q ss_pred CCC-CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 158 AEG-PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 158 ~~~-~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
|-. +.-++++|..|-.|++-|+.+|...+++. || ++.++++. |+|. ..+.|++|+.||.|++|
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--------GH----r~~vlaV~-Wsp~---~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--------GH----RDGVLAVE-WSPS---SEWVLATGSADGAIRLW 216 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeec--------cc----cCceEEEE-eccC---ceeEEEecCCCceEEEE
Confidence 322 23455578889999999999999999999 88 44788998 9996 33489999999999999
Q ss_pred EcCCCCcceeee--------------eccCCCeeEEEeecCCCce
Q 024245 237 DIRNPGIPLTAM--------------KVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 237 d~~~~~~~~~~~--------------~~~~~~v~~~~~s~~g~~l 267 (270)
|++....+...+ ..|.+.|++++|+.||.++
T Consensus 217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred EeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence 998742333333 3466789999999999876
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.3e-25 Score=175.36 Aligned_cols=205 Identities=16% Similarity=0.287 Sum_probs=144.5
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
.++|++.|+||.+.|.+++||.++ +|+++|.|.+|++|++...+++++|. |. +.|+|++|+|. |.+++++|+.||
T Consensus 358 ~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn--dfVTcVaFnPv-DDryFiSGSLD~ 432 (712)
T KOG0283|consen 358 SEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HN--DFVTCVAFNPV-DDRYFISGSLDG 432 (712)
T ss_pred cccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cC--CeeEEEEeccc-CCCcEeeccccc
Confidence 358999999999999999999876 89999999999999999999999886 55 77999999998 559999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC---CCceEEEeccCceeee---------ccCCCCC-
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVGETVDT---------DSLCDSK- 153 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~- 153 (270)
.|+||++...+... .......+.+ ++..+.+..+..| +...+|+....+.... ...++.-
T Consensus 433 KvRiWsI~d~~Vv~-----W~Dl~~lITA--vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rIT 505 (712)
T KOG0283|consen 433 KVRLWSISDKKVVD-----WNDLRDLITA--VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRIT 505 (712)
T ss_pred ceEEeecCcCeeEe-----ehhhhhhhee--EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceee
Confidence 99999998776432 1111222222 2233333333333 3334455544432221 1112211
Q ss_pred -eEecCCCCe-EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245 154 -DDVPAEGPK-YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (270)
Q Consensus 154 -~~~s~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg 231 (270)
+.|.|.... +|+ +. .|..|||||.++..++..|+ |+... . .-.... |+. ||+ +|+++++|.
T Consensus 506 G~Q~~p~~~~~vLV-TS-nDSrIRI~d~~~~~lv~KfK--------G~~n~-~-SQ~~As-fs~---Dgk-~IVs~seDs 568 (712)
T KOG0283|consen 506 GLQFFPGDPDEVLV-TS-NDSRIRIYDGRDKDLVHKFK--------GFRNT-S-SQISAS-FSS---DGK-HIVSASEDS 568 (712)
T ss_pred eeEecCCCCCeEEE-ec-CCCceEEEeccchhhhhhhc--------ccccC-C-cceeee-Ecc---CCC-EEEEeecCc
Confidence 666655443 554 33 58999999999999999999 55332 1 223333 887 566 999999999
Q ss_pred cEEEEEcCC
Q 024245 232 SILVWDIRN 240 (270)
Q Consensus 232 ~i~vwd~~~ 240 (270)
.|++|+...
T Consensus 569 ~VYiW~~~~ 577 (712)
T KOG0283|consen 569 WVYIWKNDS 577 (712)
T ss_pred eEEEEeCCC
Confidence 999999854
No 76
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.5e-24 Score=150.98 Aligned_cols=237 Identities=15% Similarity=0.150 Sum_probs=175.0
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC---ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
-.+|++.|..+...-.|+.||+++.|++|+|+.+++. +.+.++.+|. ++|..++|....-|++|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~--GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS--GPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC--CCeeEEeecccccCcEeeEeecCceEEE
Confidence 4579999999888888999999999999999999764 5677889998 7799999965446799999999999999
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCce---EEEeccC--ceeeeccCCCCC----eEecCC--
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD---CYEREVG--ETVDTDSLCDSK----DDVPAE-- 159 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~----~~~s~~-- 159 (270)
|.-++++..+ ......+......++.+++..+..++.++.++ +.+.... .........|.. ++|.|.
T Consensus 85 Wke~~g~w~k--~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 85 WKEENGRWTK--AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EecCCCchhh--hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999987654 44455566667777777777777666655444 3343332 233445555555 778775
Q ss_pred -C----------CeEEEEecCCCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245 160 -G----------PKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (270)
Q Consensus 160 -~----------~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (270)
| .+-|+ +|+.|..|+||+..+++- -.+|. +|. +.+..++ |.|.-.-.+.+|++
T Consensus 163 ~g~~~~~~~~~~~krlv-SgGcDn~VkiW~~~~~~w~~e~~l~--------~H~----dwVRDVA-waP~~gl~~s~iAS 228 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLV-SGGCDNLVKIWKFDSDSWKLERTLE--------GHK----DWVRDVA-WAPSVGLPKSTIAS 228 (299)
T ss_pred CccccccCcccccceee-ccCCccceeeeecCCcchhhhhhhh--------hcc----hhhhhhh-hccccCCCceeeEE
Confidence 3 12243 677899999999987642 23355 674 4666776 99875445569999
Q ss_pred ecCCCcEEEEEcCCCCc--ceeeeeccCCCeeEEEeecCCCcee
Q 024245 227 GYEDGSILVWDIRNPGI--PLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 227 ~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+++||+|.||..+...+ ....++.....++.++||..|..|+
T Consensus 229 ~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~La 272 (299)
T KOG1332|consen 229 CSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILA 272 (299)
T ss_pred ecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEE
Confidence 99999999998774222 2333444567899999999999886
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.6e-24 Score=165.89 Aligned_cols=223 Identities=16% Similarity=0.204 Sum_probs=176.8
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEee-cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
++..|+++.|+++|.+|+.|..+|.|.|||..+.+.+..+.+ |. ..|-+++|.. ..+.+|+.|+.|..+|++.
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~--~rvg~laW~~----~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA--SRVGSLAWNS----SVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC--ceeEEEeccC----ceEEEecCCCcEEEEEEec
Confidence 388999999999999999999999999999999999999988 76 6799999976 7899999999999999998
Q ss_pred CccCCCCccceecccceEEEEeeccCCccceecCCCCce---EEEeccCceeeeccCCCCC----eEecCCCCeEEEEec
Q 024245 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD---CYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG 168 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~ 168 (270)
.+.... .+..+....|.+... .+...++.++.+. +||.. ...+...+..|.. ++|+|-...+||+.|
T Consensus 290 ~~~~~~---~~~~H~qeVCgLkws--~d~~~lASGgnDN~~~Iwd~~-~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 290 SQHVVS---TLQGHRQEVCGLKWS--PDGNQLASGGNDNVVFIWDGL-SPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred chhhhh---hhhcccceeeeeEEC--CCCCeeccCCCccceEeccCC-CccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 865431 356666677766554 4445555555544 45552 2334445666666 899999888887543
Q ss_pred -CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee
Q 024245 169 -EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (270)
Q Consensus 169 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~ 247 (270)
+.|+.|++||..++..+..+.. ...|..+. |+|.. .++...-|..++.|.||+..+ .+++..
T Consensus 364 Gs~D~~i~fwn~~~g~~i~~vdt-------------gsQVcsL~-Wsk~~--kEi~sthG~s~n~i~lw~~ps-~~~~~~ 426 (484)
T KOG0305|consen 364 GSADRCIKFWNTNTGARIDSVDT-------------GSQVCSLI-WSKKY--KELLSTHGYSENQITLWKYPS-MKLVAE 426 (484)
T ss_pred CCcccEEEEEEcCCCcEeccccc-------------CCceeeEE-EcCCC--CEEEEecCCCCCcEEEEeccc-cceeee
Confidence 4699999999999999888873 45788888 99963 332334445678999999999 889999
Q ss_pred eeccCCCeeEEEeecCCCcee
Q 024245 248 MKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 248 ~~~~~~~v~~~~~s~~g~~ls 268 (270)
+.+|...|..+++||||..|.
T Consensus 427 l~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred ecCCcceeEEEEECCCCCEEE
Confidence 999999999999999998764
No 78
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.4e-23 Score=170.02 Aligned_cols=196 Identities=14% Similarity=0.184 Sum_probs=136.9
Q ss_pred cccccccccccEEEEEEeCCCCE-EEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPI-LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
++..+.+|...|.+++|+|++.. |++++.|+.|+|||+++++.+..+. +. ..|.+++|+| +|.+|++++.|+.|
T Consensus 117 p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~--~~V~Slswsp--dG~lLat~s~D~~I 191 (568)
T PTZ00420 117 PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MP--KKLSSLKWNI--KGNLLSGTCVGKHM 191 (568)
T ss_pred ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cC--CcEEEEEECC--CCCEEEEEecCCEE
Confidence 45678899999999999998875 5799999999999999988777665 33 5699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 168 (270)
++||+++++... .+..+........+.. ..|++++.+++. +|
T Consensus 192 rIwD~Rsg~~i~----tl~gH~g~~~s~~v~~---------------------------------~~fs~d~~~IlT-tG 233 (568)
T PTZ00420 192 HIIDPRKQEIAS----SFHIHDGGKNTKNIWI---------------------------------DGLGGDDNYILS-TG 233 (568)
T ss_pred EEEECCCCcEEE----EEecccCCceeEEEEe---------------------------------eeEcCCCCEEEE-EE
Confidence 999999886432 3443332211100000 125677776553 45
Q ss_pred CCC---ceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 169 EQL---SEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 169 ~~d---~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
..+ +.|+|||++. ++++..+.. + . ..+.++.. |.++ +|. ++++|+.|+.|++|++.. +.
T Consensus 234 ~d~~~~R~VkLWDlr~~~~pl~~~~l--------d-~-~~~~L~p~--~D~~--tg~-l~lsGkGD~tIr~~e~~~-~~- 296 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSALVTMSI--------D-N-ASAPLIPH--YDES--TGL-IYLIGKGDGNCRYYQHSL-GS- 296 (568)
T ss_pred cCCCCccEEEEEECCCCCCceEEEEe--------c-C-CccceEEe--eeCC--CCC-EEEEEECCCeEEEEEccC-Cc-
Confidence 433 4799999995 556665541 1 1 12222222 4443 465 899999999999999986 43
Q ss_pred eeeeec--cCCCeeEEEeecCCC
Q 024245 245 LTAMKV--HLEPGLECSMWRNPI 265 (270)
Q Consensus 245 ~~~~~~--~~~~v~~~~~s~~g~ 265 (270)
+..+.. +..++.+++|.|+..
T Consensus 297 ~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 297 IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEeecccccCCCccceEEccccc
Confidence 233322 457888999999653
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.6e-24 Score=161.74 Aligned_cols=229 Identities=16% Similarity=0.184 Sum_probs=171.3
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
++++.-.+..|.++.|-.||++||+|...|.|+|+|+++...++.+..|. .+|..+.|+|. ++..|++|+.|+.+++
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~--apv~~~~f~~~-d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ--APVHVTKFSPQ-DNTMLVSGSDDKVVKY 137 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc--CceeEEEeccc-CCeEEEecCCCceEEE
Confidence 34455567889999999999999999999999999987777788888998 77999999995 4567889999999999
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeeecc-CCCCC--eEecCCCCeEEE
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDS-LCDSK--DDVPAEGPKYMA 165 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~~~~~~ 165 (270)
||+.+... ...+.++.....+.++..... .......+.+..||++........+ .++.- +.+-|.|.. ++
T Consensus 138 ~d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~-ia 212 (487)
T KOG0310|consen 138 WDLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSL-IA 212 (487)
T ss_pred EEcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCE-EE
Confidence 99998863 346667777766666554433 3333445566778888764332233 22222 788888864 44
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
++|+ ..|+|||+-+|........ .| ...++|+. +.. ++. .|++|+-|+.|++||+.+ .+.+
T Consensus 213 sAgG--n~vkVWDl~~G~qll~~~~-------~H----~KtVTcL~-l~s---~~~-rLlS~sLD~~VKVfd~t~-~Kvv 273 (487)
T KOG0310|consen 213 SAGG--NSVKVWDLTTGGQLLTSMF-------NH----NKTVTCLR-LAS---DST-RLLSGSLDRHVKVFDTTN-YKVV 273 (487)
T ss_pred EcCC--CeEEEEEecCCceehhhhh-------cc----cceEEEEE-eec---CCc-eEeecccccceEEEEccc-eEEE
Confidence 4453 7899999996664433331 35 44788887 775 344 999999999999999877 7888
Q ss_pred eeeeccCCCeeEEEeecCCCce
Q 024245 246 TAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 246 ~~~~~~~~~v~~~~~s~~g~~l 267 (270)
..+. ..++|.+++.+||++.+
T Consensus 274 ~s~~-~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 274 HSWK-YPGPVLSIAVSPDDQTV 294 (487)
T ss_pred Eeee-cccceeeEEecCCCceE
Confidence 8887 47899999999988764
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-22 Score=140.29 Aligned_cols=238 Identities=16% Similarity=0.199 Sum_probs=163.5
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC------C-----ce-e---EEEeecCCCcceEEEEEeeCC
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------H-----RT-V---SSSWVHSAAHGIVSVATGPSI 74 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------~-----~~-~---~~~~~~~~~~~v~~~~~~~~~ 74 (270)
.+.+|. -..+|.+++|+|.|.+.+.|+...+++|..... + ++ . +.-+.|. +.|+|.+|+|
T Consensus 25 ~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk--gsiyc~~ws~-- 99 (350)
T KOG0641|consen 25 AINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK--GSIYCTAWSP-- 99 (350)
T ss_pred EEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC--ccEEEEEecC--
Confidence 344443 467899999999999999999999999875432 1 11 1 1112344 7799999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccCC-CCccceecccceEEEEee--ccCCccceecCCC--CceEE--EeccCceeeec
Q 024245 75 GLNKVISQGRDGTVKCWDIENGGLSS-NPSLTIKTNSYHFCKLSL--VKEPYANAKQANE--PKDCY--EREVGETVDTD 147 (270)
Q Consensus 75 ~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~ 147 (270)
.|++|++|+.|++|++..++...+.. -+-..+..+...+..+.+ ........+..++ .-.++ |...++.. ..
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~-~a 178 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF-HA 178 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc-ee
Confidence 99999999999999998776544321 112223333333333333 2333333333322 22233 34444333 35
Q ss_pred cCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC-CCceeeeeeecCCCCCCCceE
Q 024245 148 SLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK-GRGMCMAVQAYLPSKSQGFVN 223 (270)
Q Consensus 148 ~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~p~~~~g~~~ 223 (270)
+.+|.. .-++.++- ++ ++|+.|.+|++||++...++.++... -|... ....+.+++ ..|. |+ +
T Consensus 179 ~sghtghilalyswn~~-m~-~sgsqdktirfwdlrv~~~v~~l~~~------~~~~glessavaav~-vdps---gr-l 245 (350)
T KOG0641|consen 179 LSGHTGHILALYSWNGA-MF-ASGSQDKTIRFWDLRVNSCVNTLDND------FHDGGLESSAVAAVA-VDPS---GR-L 245 (350)
T ss_pred ecCCcccEEEEEEecCc-EE-EccCCCceEEEEeeeccceeeeccCc------ccCCCcccceeEEEE-ECCC---cc-e
Confidence 667777 34556664 44 48999999999999999988887632 23322 234566776 8885 66 9
Q ss_pred EEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 224 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
|++|-.|....+||++. +++++.+..|+..|.++.|||...||
T Consensus 246 l~sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yl 288 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYL 288 (350)
T ss_pred eeeccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEE
Confidence 99999999999999998 89999999999999999999988776
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=2.7e-24 Score=150.43 Aligned_cols=203 Identities=20% Similarity=0.281 Sum_probs=161.3
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.++.|+ |+.-|.+++|+.|.++|++|+.+..++|+|++.. .+...+.+|. +.|..+.|.. ..+.+++...|++|
T Consensus 93 elhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght--g~Ir~v~wc~--eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 93 ELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT--GGIRTVLWCH--EDKCILSSADDKTV 167 (334)
T ss_pred hhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC--CcceeEEEec--cCceEEeeccCCce
Confidence 445554 8899999999999999999999999999999865 4667888888 6699999998 77899999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc-CCCCC-eEecCCCCeEEEE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-LCDSK-DDVPAEGPKYMAV 166 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~s~~~~~~~~~ 166 (270)
|+||.+++..++ .+.. ......+.+........++.++.+.+|+......++..- ..... ..++|+...++
T Consensus 168 RLWD~rTgt~v~----sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV-- 240 (334)
T KOG0278|consen 168 RLWDHRTGTEVQ----SLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV-- 240 (334)
T ss_pred EEEEeccCcEEE----EEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEE--
Confidence 999999998655 2221 122334555566677788889999999998887665432 22222 77889985443
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+|++|..++.||..+++.+..+.. || .+.+.++. |+|+ |. ..++|++||+|++|...-
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nk-------gh----~gpVhcVr-FSPd---GE-~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNK-------GH----FGPVHCVR-FSPD---GE-LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ecCcceEEEEEeccCCceeeeccc-------CC----CCceEEEE-ECCC---Cc-eeeccCCCceEEEEEecC
Confidence 688899999999999998888632 66 55788898 9995 55 999999999999999875
No 82
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-24 Score=157.15 Aligned_cols=232 Identities=15% Similarity=0.150 Sum_probs=169.4
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
++++.|.||++.|+.++.......+.+++.|.+-+||.++++.|+..+.+|. +.|++|+|++ .+.++++++.|++.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~--GSVNsikfh~--s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT--GSVNSIKFHN--SGLLLLTASGDETA 214 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc--cceeeEEecc--ccceEEEccCCcch
Confidence 5788899999999999998888899999999999999999999999999999 6699999999 88999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~ 164 (270)
+||...-.-....+... ..+......-..+... -........|-.+-+.+...+.+|.. ..|-..|+.++
T Consensus 215 HIW~~av~~~vP~~~a~-~~hSsEeE~e~sDe~~-----~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v 288 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAP-SDHSSEEEEEHSDEHN-----RDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV 288 (481)
T ss_pred HHHHHhhcCcCCCCCCC-CCCCchhhhhcccccc-----cccccccccCCceeeeeeeeeeccccceEehhhhcCcceee
Confidence 99974322111100000 0000000000000000 00000111122233455567778887 34556777655
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
+++.|.+..+||+++++++..+. ||... .+.++ -+|. .+ ++++.+.|-+.++||++..-..
T Consensus 289 --TaSWDRTAnlwDVEtge~v~~Lt--------GHd~E----LtHcs-tHpt---Qr-LVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 289 --TASWDRTANLWDVETGEVVNILT--------GHDSE----LTHCS-THPT---QR-LVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred --eeeccccceeeeeccCceecccc--------Ccchh----ccccc-cCCc---ce-EEEEeccCceeEeccchhhcce
Confidence 78899999999999999999999 88553 33333 6775 33 9999999999999999975677
Q ss_pred eeeeeccCCCeeEEEeecCCCceec
Q 024245 245 LTAMKVHLEPGLECSMWRNPITMSE 269 (270)
Q Consensus 245 ~~~~~~~~~~v~~~~~s~~g~~ls~ 269 (270)
+..|+||.+.|+++.|..|.+++|.
T Consensus 350 V~VFQGHtdtVTS~vF~~dd~vVSg 374 (481)
T KOG0300|consen 350 VAVFQGHTDTVTSVVFNTDDRVVSG 374 (481)
T ss_pred eeeecccccceeEEEEecCCceeec
Confidence 8999999999999999999998873
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=2.2e-24 Score=164.83 Aligned_cols=242 Identities=12% Similarity=0.131 Sum_probs=168.6
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc----eeEEE-eecCCCcceEEEEEeeCCCCCEEEE
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSS-WVHSAAHGIVSVATGPSIGLNKVIS 81 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s 81 (270)
|......+++|+..|.++++.|.|..|++|+.|-.|++||+..-. ..+.+ .... ..|.++.|++ .|+.|++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~--Tg~~iLv 231 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSV--TGDQILV 231 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecC--CCCeEEE
Confidence 344567789999999999999999999999999999999997531 12222 2233 3499999999 8888888
Q ss_pred EeCCCcEEEEEccCCccCC-----CCccce---ecccceEE--EEeeccCCccceecCCCCceEEEeccCceeeecc---
Q 024245 82 QGRDGTVKCWDIENGGLSS-----NPSLTI---KTNSYHFC--KLSLVKEPYANAKQANEPKDCYEREVGETVDTDS--- 148 (270)
Q Consensus 82 ~~~d~~i~~wd~~~~~~~~-----~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 148 (270)
.+.....+|+|-....... ..+..+ ++|..... ++.+............+..++|++.+.+.....+
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 8888899999976543322 111111 22222222 2333333344555667788999998765433322
Q ss_pred -CCCCC-----eEecCCCCeEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245 149 -LCDSK-----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220 (270)
Q Consensus 149 -~~~~~-----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g 220 (270)
.+-.. ++|+++|+. + ++|..||+|.+|+.+... +...+.. +|.. ...+.++. |+++ |
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~-i-Aagc~DGSIQ~W~~~~~~v~p~~~vk~-------AH~~--g~~Itsi~-FS~d---g 376 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKL-I-AAGCLDGSIQIWDKGSRTVRPVMKVKD-------AHLP--GQDITSIS-FSYD---G 376 (641)
T ss_pred cCCCcccCceeeecCCCcch-h-hhcccCCceeeeecCCcccccceEeee-------ccCC--CCceeEEE-eccc---c
Confidence 11111 899999985 3 367789999999986543 3333433 6643 23678888 9984 5
Q ss_pred ceEEEEecCCCcEEEEEcCCCCcceeeeeccC--CCeeEEEeecCCCcee
Q 024245 221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL--EPGLECSMWRNPITMS 268 (270)
Q Consensus 221 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~ls 268 (270)
+ +|++-+.|+++++||++...+++....+-. -+-+.++|||+.++|-
T Consensus 377 ~-~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 377 N-YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLIL 425 (641)
T ss_pred c-hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEE
Confidence 5 999999999999999999888888877643 3557899999988763
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=150.58 Aligned_cols=227 Identities=15% Similarity=0.198 Sum_probs=158.1
Q ss_pred CcccccccccccEEEEEEeCCCC--EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
..+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+....+++..++.|.++ |+.++++| .+++-++.+.|+
T Consensus 74 ~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHP--S~KLALsVg~D~ 149 (362)
T KOG0294|consen 74 KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHP--SGKLALSVGGDQ 149 (362)
T ss_pred hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecC--CCceEEEEcCCc
Confidence 35667778999999999999655 8999999999999999999999999999954 99999999 888888999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 166 (270)
.+++||+..++... +..+...... +.+..............+.+|.+...............++..+.....++
T Consensus 150 ~lr~WNLV~Gr~a~--v~~L~~~at~---v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~- 223 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAF--VLNLKNKATL---VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELL- 223 (362)
T ss_pred eeeeehhhcCccce--eeccCCccee---eEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEE-
Confidence 99999999886532 2222222211 33333344344455555666766665544433222222333333333343
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC----
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG---- 242 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~---- 242 (270)
+|.+|+.|.+||..+..+...+. +|...+.+... |.. +++. +|+|+++||.|+|||+++..
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~~----~~~--~~~~-~lvTaSSDG~I~vWd~~~~~k~~~ 288 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIAS----YTN--PEHE-YLVTASSDGFIKVWDIDMETKKRP 288 (362)
T ss_pred EecCCceEEEeccCCCccceeee--------cchhheeeeEE----Eec--CCce-EEEEeccCceEEEEEccccccCCc
Confidence 46779999999999988888888 89775554431 221 1344 99999999999999998731
Q ss_pred cceeeeeccCCCeeEEEee
Q 024245 243 IPLTAMKVHLEPGLECSMW 261 (270)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~s 261 (270)
.++..+.- ...++|+...
T Consensus 289 ~~l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 289 TLLAELNT-NVRLTCLRVK 306 (362)
T ss_pred ceeEEeec-CCccceeeeh
Confidence 34444442 4566666553
No 85
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.7e-24 Score=173.15 Aligned_cols=191 Identities=16% Similarity=0.260 Sum_probs=158.2
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
..++.-+..|.+++|+|...+++++--.|.|++||.+=+.++..|..|. ++|..++|+| .+.+++||+.|-.|++|
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd--GpVRgv~FH~--~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD--GPVRGVDFHP--TQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC--CccceeeecC--CCCeEEecCCccEEEEE
Confidence 3456667889999999999999999999999999999999999999999 7799999999 88899999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d 171 (270)
+..+.++ ++++.++-..+.. +.|++.-+.++ ++|+|
T Consensus 79 nYk~rrc----lftL~GHlDYVRt--------------------------------------~~FHheyPWIl--SASDD 114 (1202)
T KOG0292|consen 79 NYKTRRC----LFTLLGHLDYVRT--------------------------------------VFFHHEYPWIL--SASDD 114 (1202)
T ss_pred eccccee----hhhhccccceeEE--------------------------------------eeccCCCceEE--EccCC
Confidence 9998865 4566666544432 23666656444 78899
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC-------C--
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-------G-- 242 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~-------~-- 242 (270)
.+|+||+..+++++..+. || ...++|.+ |+|.+. .++++|.|.+|+|||+... +
T Consensus 115 QTIrIWNwqsr~~iavlt--------GH----nHYVMcAq-FhptED----lIVSaSLDQTVRVWDisGLRkk~~~pg~~ 177 (1202)
T KOG0292|consen 115 QTIRIWNWQSRKCIAVLT--------GH----NHYVMCAQ-FHPTED----LIVSASLDQTVRVWDISGLRKKNKAPGSL 177 (1202)
T ss_pred CeEEEEeccCCceEEEEe--------cC----ceEEEeec-cCCccc----eEEEecccceEEEEeecchhccCCCCCCc
Confidence 999999999999999999 88 44899998 999754 9999999999999997521 1
Q ss_pred -------------------cceeeeeccCCCeeEEEeecCCCce
Q 024245 243 -------------------IPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 243 -------------------~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
.....+.||...|+-++|+|.-.+|
T Consensus 178 e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 178 EDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred hhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 0234578999999999999964443
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=151.48 Aligned_cols=238 Identities=17% Similarity=0.206 Sum_probs=148.7
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-----ee------------------------------
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TV------------------------------ 53 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~------------------------------ 53 (270)
-.+..|+||.+.|++++|+.||++||+++.|++|+||+++.-. ++
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 4567899999999999999999999999999999999987511 11
Q ss_pred -EEEee---c------------------CCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccc
Q 024245 54 -SSSWV---H------------------SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY 111 (270)
Q Consensus 54 -~~~~~---~------------------~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 111 (270)
..+.. . .+...|..+-... ++.+|++++.|..|.+|+++ |+.+. .+..+..
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-Gq~L~----~idtnq~ 229 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-GQLLQ----SIDTNQS 229 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-Cceee----eeccccc
Confidence 01100 0 0012234444444 67899999999999999998 54433 3333322
Q ss_pred --eEEEEeeccCCccceecCCCCceEEEeccCc-----e--eeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEe
Q 024245 112 --HFCKLSLVKEPYANAKQANEPKDCYEREVGE-----T--VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWD 178 (270)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd 178 (270)
..+.+++++..... ..-.-.+..|.+--.+ . ....+.||.. .+|+++..+++ +.+.||+++|||
T Consensus 230 ~n~~aavSP~GRFia~-~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v--tvSkDG~wriwd 306 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAV-SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV--TVSKDGKWRIWD 306 (420)
T ss_pred cccceeeCCCCcEEEE-ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE--EEecCCcEEEee
Confidence 22233333221111 1112344556543221 1 1236678888 89999998765 677899999999
Q ss_pred CCC----cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee-eccCC
Q 024245 179 LNT----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLE 253 (270)
Q Consensus 179 ~~~----~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~ 253 (270)
..- ++--+.++.. ..+-|.. .+....+. .+|. |+ .| +.+....++++..++ ++....+ ..|..
T Consensus 307 tdVrY~~~qDpk~Lk~g---~~pl~aa--g~~p~RL~-lsP~---g~-~l-A~s~gs~l~~~~se~-g~~~~~~e~~h~~ 374 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEG---SAPLHAA--GSEPVRLE-LSPS---GD-SL-AVSFGSDLKVFASED-GKDYPELEDIHST 374 (420)
T ss_pred ccceEecCCCchHhhcC---Ccchhhc--CCCceEEE-eCCC---Cc-EE-EeecCCceEEEEccc-CccchhHHHhhcC
Confidence 753 2222222210 0011222 22334676 8884 54 34 444456799999998 5555444 46899
Q ss_pred CeeEEEeecCCCcee
Q 024245 254 PGLECSMWRNPITMS 268 (270)
Q Consensus 254 ~v~~~~~s~~g~~ls 268 (270)
.|.+|+|+++|+++.
T Consensus 375 ~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 375 TISSISYSSDGKYIA 389 (420)
T ss_pred ceeeEEecCCCcEEe
Confidence 999999999999975
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=6.2e-24 Score=159.63 Aligned_cols=193 Identities=16% Similarity=0.227 Sum_probs=147.4
Q ss_pred cccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCc----------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 16 ~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
-|.+.|+.+.+.| +..++|+++..+.|.|||..+.. +-..+.+|..+ -++++|++.. ...|++++.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~~-~g~Lls~~~ 198 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQQ-EGTLLSGSD 198 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--cccccccccc-ceeEeeccC
Confidence 4999999999999 45578888999999999986532 11267788753 7889999963 367999999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCC
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG 160 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~ 160 (270)
|++|.+||+........ .. .....+.+|.. ++|++-.
T Consensus 199 d~~i~lwdi~~~~~~~~-~~--------------------------------------~p~~~~~~h~~~VeDV~~h~~h 239 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDK-VV--------------------------------------DPKTIFSGHEDVVEDVAWHPLH 239 (422)
T ss_pred CCcEEEEeccccccCCc-cc--------------------------------------cceEEeecCCcceehhhccccc
Confidence 99999999986543110 00 01112333443 6788888
Q ss_pred CeEEEEecCCCceEEEEeCCC--cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 161 PKYMAVAGEQLSEVEIWDLNT--AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
..+++++ ++|+.+.|||+|+ .++..... +| .+.+.++. |+|. ++. .||||+.|++|++||+
T Consensus 240 ~~lF~sv-~dd~~L~iwD~R~~~~~~~~~~~--------ah----~~~vn~~~-fnp~--~~~-ilAT~S~D~tV~LwDl 302 (422)
T KOG0264|consen 240 EDLFGSV-GDDGKLMIWDTRSNTSKPSHSVK--------AH----SAEVNCVA-FNPF--NEF-ILATGSADKTVALWDL 302 (422)
T ss_pred hhhheee-cCCCeEEEEEcCCCCCCCccccc--------cc----CCceeEEE-eCCC--CCc-eEEeccCCCcEEEeec
Confidence 8888754 4699999999995 44444444 56 45788888 9996 344 9999999999999999
Q ss_pred CCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 239 RNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
|+..+++.++.+|...|.++.|||+...+
T Consensus 303 RnL~~~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 303 RNLNKPLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred hhcccCceeccCCCcceEEEEeCCCCCce
Confidence 99999999999999999999999976543
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.6e-23 Score=149.12 Aligned_cols=228 Identities=16% Similarity=0.289 Sum_probs=176.9
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.++..+..|.++|++++.+ +.++|+||.|-+|+|||+.+...+..+..|. +.|+++.|.+....+.|++|+.||.|
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha--gsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHA--GSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccc--cceEEEEecCCcchhheeeecCCCcE
Confidence 4578889999999999985 8899999999999999999999999998897 77999999983223489999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA 165 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~ 165 (270)
.+|+...-.++. .++.+...+..+++.++.... ........+.|++-+++.-......+.. +.|+|.|.++++
T Consensus 110 ~iw~~~~W~~~~----slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLK----SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEee----eecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 999998765544 666776666666666655443 3444556678998888766555555555 999999998876
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
.+ ...|-||.+.+......+.. ...+.++. |. ++. +|++|+.|+.|.+||..+ ..+.
T Consensus 186 -~~--~~~i~i~q~d~A~v~~~i~~-------------~~r~l~~~-~l----~~~-~L~vG~d~~~i~~~D~ds-~~~~ 242 (362)
T KOG0294|consen 186 -SG--RNKIDIYQLDNASVFREIEN-------------PKRILCAT-FL----DGS-ELLVGGDNEWISLKDTDS-DTPL 242 (362)
T ss_pred -Ee--ccEEEEEecccHhHhhhhhc-------------cccceeee-ec----CCc-eEEEecCCceEEEeccCC-Cccc
Confidence 34 26799999988777766662 12234444 54 344 899999999999999998 8999
Q ss_pred eeeeccCCCeeEEEee--cCCCce
Q 024245 246 TAMKVHLEPGLECSMW--RNPITM 267 (270)
Q Consensus 246 ~~~~~~~~~v~~~~~s--~~g~~l 267 (270)
..+.+|...|-++.+- |++.||
T Consensus 243 ~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 243 TEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred eeeecchhheeeeEEEecCCceEE
Confidence 9999999999998843 344443
No 89
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.8e-23 Score=156.02 Aligned_cols=231 Identities=15% Similarity=0.170 Sum_probs=172.4
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC-
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG- 96 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~- 96 (270)
.+.|.+++-+|.|.+|+.|+..|.|++|.+.+|..+..+..|- ..|+++.|+. ||.+|+||+.||.|.+|++..-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY--QSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc--cceeEEEEeC--CCcEEEecCCCccEEEEEEEeec
Confidence 4679999999999999999899999999999999999998888 5599999999 9999999999999999987432
Q ss_pred ----ccCCCCccceecccceEEEEeeccCCccceecCCC---CceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEe
Q 024245 97 ----GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVA 167 (270)
Q Consensus 97 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~ 167 (270)
.....|...+..|...+..+.+...+....+.+.+ ...+|++..+..+........- +++.|.+..++ .
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~y--i 234 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVY--I 234 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEE--e
Confidence 11235566777777777777776665554444444 4456888888776654433333 88999998766 4
Q ss_pred cCCCceEEEEeCCCcce--e------eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 168 GEQLSEVEIWDLNTAER--C------TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~--~------~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
|..+|.|.+.++..... . ............||.+. ..+++++ .+- ||. +|++|+.||+|+|||+.
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLa-is~---Dgt-lLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE--SAITCLA-IST---DGT-LLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC--cceeEEE-Eec---Ccc-EEEeeCCCCCEEEEecc
Confidence 88899999988753220 0 00110001122367543 4566666 665 455 99999999999999999
Q ss_pred CCCcceeeeeccCCCeeEEEeec
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
+ .++++++....++|+.+.+.|
T Consensus 308 S-~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 308 S-KQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred h-HHHHHHHhhhccccceeEeec
Confidence 9 899999886678999999965
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.1e-23 Score=155.71 Aligned_cols=203 Identities=14% Similarity=0.224 Sum_probs=161.3
Q ss_pred cccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.++.+++|+.+|..+.|+| ++..+++|+.|+.+++||+.+......+.+|+ +.|.+.+|+|. ++..++|||.||+|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht--DYVR~g~~~~~-~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT--DYVRCGDISPA-NDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc--ceeEeeccccC-CCeEEEecCCCceE
Confidence 5788999999999999999 56688999999999999999888766788888 78999999996 33688999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~ 164 (270)
++||.+.... .+..+ .+......+-..++......+.|....+||+..+......+..|.. +++..++..|+
T Consensus 179 rl~DtR~~~~---~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 179 RLWDTRSLTS---RVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EEEEeccCCc---eeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 9999987641 12222 2223333334444445566778888999999988777766666766 78888888776
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
+++-|+.+++||+.+-+.+..+. ..+.+++++ .+|+ ++ .++.|..||.+.+-+..
T Consensus 255 --S~sLD~~VKVfd~t~~Kvv~s~~-------------~~~pvLsia-vs~d---d~-t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 255 --SGSLDRHVKVFDTTNYKVVHSWK-------------YPGPVLSIA-VSPD---DQ-TVVIGMSNGLVSIRRRE 309 (487)
T ss_pred --ecccccceEEEEccceEEEEeee-------------cccceeeEE-ecCC---Cc-eEEEecccceeeeehhh
Confidence 68889999999988888888887 467899998 9985 44 89999999998877443
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=9.5e-24 Score=152.11 Aligned_cols=240 Identities=13% Similarity=0.129 Sum_probs=171.9
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
.+++|..|.+.|+++.|+|....|++|+.|++|+++|..+....+.++.-....+|.++.|+| .|.+|+.|..-.+++
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~r 241 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLR 241 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCcee
Confidence 689999999999999999999999999999999999998654444333322226799999999 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCC-ccceecCCCCceEEEeccCceeeeccCCCCC-----eEecCCCCeE
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKY 163 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~ 163 (270)
+||+++.++..... .-..+...++.+...... ......-.+.+.+||--.++++...-..|.. ..|+.+|+++
T Consensus 242 lYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 242 LYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred EEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 99999987643111 222233333333332222 1233344566778888888888888888887 6799999877
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe-cCCCcEEEEEcCCCC
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPG 242 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~~dg~i~vwd~~~~~ 242 (270)
| +++.|..+++|.+.+++++.++.+...+.... ...... |+..+. |++.- -..+.+.-||.++..
T Consensus 321 L--sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~-------~rtqAv-FNhtEd----yVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 321 L--SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK-------HRTQAV-FNHTED----YVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred e--ecCCcceeeeeeecCCceEEEEecCCcccchh-------hhhhhh-hcCccc----eEEccccccCceeeccccchh
Confidence 6 55679999999999999999998421111111 122222 776532 44444 345789999999944
Q ss_pred cceeeeeccCCCeeEEEeecCCCc
Q 024245 243 IPLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
+....-.+|++++..+.-||.+..
T Consensus 387 r~~l~slgHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 387 RVALLSLGHNGAVRWIVHSPVEPA 410 (430)
T ss_pred hhhhcccCCCCCceEEEeCCCCCc
Confidence 433334589999999999997654
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=167.57 Aligned_cols=217 Identities=18% Similarity=0.278 Sum_probs=170.0
Q ss_pred ccccc-ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE-EeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 12 AVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 12 ~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
..+.+ +...+.+..|+ +.++++++.|++|++||..++..+.. +.+|. +.|.++++.. .++++++|+.|.+++
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~--g~V~~l~~~~--~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF--GGVWGLAFPS--GGDKLVSGSTDKTER 274 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCC--CCceeEEEec--CCCEEEEEecCCcEE
Confidence 44444 56788999998 45899999999999999999988888 99999 6799999987 679999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEe
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVA 167 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~ 167 (270)
+||..++.+.. .+.++......+........ .......+..|++.++..+.. +.+|.. -+..-++..++ +
T Consensus 275 vWd~~sg~C~~----~l~gh~stv~~~~~~~~~~~-sgs~D~tVkVW~v~n~~~l~l-~~~h~~~V~~v~~~~~~lv--s 346 (537)
T KOG0274|consen 275 VWDCSTGECTH----SLQGHTSSVRCLTIDPFLLV-SGSRDNTVKVWDVTNGACLNL-LRGHTGPVNCVQLDEPLLV--S 346 (537)
T ss_pred eEecCCCcEEE----EecCCCceEEEEEccCceEe-eccCCceEEEEeccCcceEEE-eccccccEEEEEecCCEEE--E
Confidence 99999998765 66667666665554432211 123456677899998777664 444766 44445565444 6
Q ss_pred cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC-ccee
Q 024245 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPLT 246 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~-~~~~ 246 (270)
|+.|++|++||+.++++++++. ||. ..+.++. +.+. . .+++|+.|++|++||+++ . +++.
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~--------gH~----~~V~sl~-~~~~----~-~~~Sgs~D~~IkvWdl~~-~~~c~~ 407 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLS--------GHT----GRVYSLI-VDSE----N-RLLSGSLDTTIKVWDLRT-KRKCIH 407 (537)
T ss_pred EecCceEEEEEhhhceeeeeec--------CCc----ceEEEEE-ecCc----c-eEEeeeeccceEeecCCc-hhhhhh
Confidence 8889999999999999999999 784 4677766 6641 2 899999999999999999 6 8999
Q ss_pred eeeccCCCeeEEEee
Q 024245 247 AMKVHLEPGLECSMW 261 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s 261 (270)
++.+|.+-+..+.+.
T Consensus 408 tl~~h~~~v~~l~~~ 422 (537)
T KOG0274|consen 408 TLQGHTSLVSSLLLR 422 (537)
T ss_pred hhcCCcccccccccc
Confidence 999999888766553
No 93
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.5e-23 Score=166.76 Aligned_cols=233 Identities=18% Similarity=0.206 Sum_probs=176.5
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
++++++.. +.+.+..|.|.++++++|...|.+.++|+.+...+.+++.|. +.|.+++.+| ++..+++||.|.+|
T Consensus 405 kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd--gaIWsi~~~p--D~~g~vT~saDktV 478 (888)
T KOG0306|consen 405 KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD--GAIWSISLSP--DNKGFVTGSADKTV 478 (888)
T ss_pred ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc--cceeeeeecC--CCCceEEecCCcEE
Confidence 45555542 478889999999999999999999999999998888889998 5699999999 99999999999999
Q ss_pred EEEEccCCccCC---CCcccee---cccceEEEEeeccCCccceecCCCC---ceEEEeccCceeeeccCCCCC----eE
Q 024245 89 KCWDIENGGLSS---NPSLTIK---TNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCDSK----DD 155 (270)
Q Consensus 89 ~~wd~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~ 155 (270)
++||..--.... .-.+.++ .-......+++..++++..++.+-. ..++-+.+.+- ...+.||.- +.
T Consensus 479 kfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-flsLYGHkLPV~smD 557 (888)
T KOG0306|consen 479 KFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-FLSLYGHKLPVLSMD 557 (888)
T ss_pred EEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-eeeecccccceeEEe
Confidence 999975221100 0011111 1112223344455555555554433 33344444332 235667766 88
Q ss_pred ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
+|||++.+ ++|+.|.+|++|-+.-|.|-+.+- +|.+ .++++. |-|. .. ++++++.|+.|+-
T Consensus 558 IS~DSkli--vTgSADKnVKiWGLdFGDCHKS~f--------AHdD----Svm~V~-F~P~---~~-~FFt~gKD~kvKq 618 (888)
T KOG0306|consen 558 ISPDSKLI--VTGSADKNVKIWGLDFGDCHKSFF--------AHDD----SVMSVQ-FLPK---TH-LFFTCGKDGKVKQ 618 (888)
T ss_pred ccCCcCeE--EeccCCCceEEeccccchhhhhhh--------cccC----ceeEEE-Eccc---ce-eEEEecCcceEEe
Confidence 99999743 378899999999999999999998 7844 788998 9995 33 8999999999999
Q ss_pred EEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 236 WDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
||-.. .+.++.+.+|...|++++.+|+|.++-
T Consensus 619 WDg~k-Fe~iq~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 619 WDGEK-FEEIQKLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred echhh-hhhheeeccchheeeeeEEcCCCCeEE
Confidence 99998 899999999999999999999997764
No 94
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=6.3e-24 Score=154.10 Aligned_cols=188 Identities=12% Similarity=0.214 Sum_probs=151.2
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
-+.++|.|++|+.|.+.||+|+.||.|+||.+++|.|++.|. .|. .+|+++.|+. |+..+++++.|.++++--+.
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt--kGvt~l~FSr--D~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT--KGVTCLSFSR--DNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc--cCeeEEEEcc--CcchhhcccccceEEEeccc
Confidence 367899999999999999999999999999999999999997 777 6699999999 98999999999999999999
Q ss_pred CCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceE
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i 174 (270)
+|++.+ .+.++...... ..|+++|.+++ +++.||+|
T Consensus 337 SGK~LK----EfrGHsSyvn~--------------------------------------a~ft~dG~~ii--saSsDgtv 372 (508)
T KOG0275|consen 337 SGKCLK----EFRGHSSYVNE--------------------------------------ATFTDDGHHII--SASSDGTV 372 (508)
T ss_pred cchhHH----HhcCccccccc--------------------------------------eEEcCCCCeEE--EecCCccE
Confidence 998765 55555433321 34889998776 56679999
Q ss_pred EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec---c
Q 024245 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---H 251 (270)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~ 251 (270)
++|+..+.+++.+|+.. + ....+.++. .-|.. -. .++.+...++|++.++. ++.++.+.. .
T Consensus 373 kvW~~KtteC~~Tfk~~------~----~d~~vnsv~-~~PKn--pe-h~iVCNrsntv~imn~q--GQvVrsfsSGkRE 436 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPL------G----TDYPVNSVI-LLPKN--PE-HFIVCNRSNTVYIMNMQ--GQVVRSFSSGKRE 436 (508)
T ss_pred EEecCcchhhhhhccCC------C----CcccceeEE-EcCCC--Cc-eEEEEcCCCeEEEEecc--ceEEeeeccCCcc
Confidence 99999999999999841 1 233455665 66652 22 78888899999999987 677777753 2
Q ss_pred CCCeeEEEeecCCCce
Q 024245 252 LEPGLECSMWRNPITM 267 (270)
Q Consensus 252 ~~~v~~~~~s~~g~~l 267 (270)
.+...+.+.||.|.+|
T Consensus 437 gGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWI 452 (508)
T ss_pred CCceEEEEecCCCcEE
Confidence 3456677888888765
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.2e-24 Score=165.40 Aligned_cols=199 Identities=19% Similarity=0.314 Sum_probs=153.9
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEE-eeCCCCCEEEEEeCCC
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVAT-GPSIGLNKVISQGRDG 86 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~d~ 86 (270)
.+..++.|.+.|+.+....+++.|+++|.|-+|++|+...+ -++.++..|. +.|.|+++ .+ +...+++|+.|+
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~--DYVkcla~~ak--~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK--DYVKCLAYIAK--NNELVASGGLDR 140 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc--chheeeeeccc--CceeEEecCCCc
Confidence 57889999999999999999999999999999999999877 6788888888 88999999 55 668899999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 166 (270)
.|.+||++++.... +..+ .....+.. ..+..+.+|. ++.++.|. + ++
T Consensus 141 ~IflWDin~~~~~l--~~s~--n~~t~~sl-----------~sG~k~siYS----------------LA~N~t~t-~-iv 187 (735)
T KOG0308|consen 141 KIFLWDINTGTATL--VASF--NNVTVNSL-----------GSGPKDSIYS----------------LAMNQTGT-I-IV 187 (735)
T ss_pred cEEEEEccCcchhh--hhhc--cccccccC-----------CCCCccceee----------------eecCCcce-E-EE
Confidence 99999999873200 0011 11111100 0011111111 44556663 3 34
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
+|+..+.+++||.++++.+..+. ||.+. +-.+. .++ ||. .++++++||+|++||+.. .+++.
T Consensus 188 sGgtek~lr~wDprt~~kimkLr--------GHTdN----Vr~ll-~~d---DGt-~~ls~sSDgtIrlWdLgq-QrCl~ 249 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLR--------GHTDN----VRVLL-VND---DGT-RLLSASSDGTIRLWDLGQ-QRCLA 249 (735)
T ss_pred ecCcccceEEeccccccceeeee--------ccccc----eEEEE-EcC---CCC-eEeecCCCceEEeeeccc-cceee
Confidence 78889999999999999999999 89654 44444 665 566 999999999999999998 89999
Q ss_pred eeeccCCCeeEEEeecC
Q 024245 247 AMKVHLEPGLECSMWRN 263 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s~~ 263 (270)
++..|+..|+++..+|+
T Consensus 250 T~~vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPS 266 (735)
T ss_pred eEEeccCceEEEeeCCC
Confidence 99999999999988875
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=2.1e-22 Score=142.14 Aligned_cols=215 Identities=17% Similarity=0.243 Sum_probs=162.9
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR--- 84 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--- 84 (270)
.+.+.++.||+++|+|++..-+.++|++|+.|.++++||+++|+++..++.. .+|..+.|++ +|++++....
T Consensus 42 GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---~~Vk~~~F~~--~gn~~l~~tD~~m 116 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN---SPVKRVDFSF--GGNLILASTDKQM 116 (327)
T ss_pred CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC---CeeEEEeecc--CCcEEEEEehhhc
Confidence 3567899999999999999999999999999999999999999999998865 6799999999 9888776543
Q ss_pred --CCcEEEEEccCCcc---CCCCccceecccceEEEEeeccCCccceecC---CCCceEEEeccCceeeeccCCCCC---
Q 024245 85 --DGTVKCWDIENGGL---SSNPSLTIKTNSYHFCKLSLVKEPYANAKQA---NEPKDCYEREVGETVDTDSLCDSK--- 153 (270)
Q Consensus 85 --d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--- 153 (270)
.+.|.++|++.... ...|...+....... ....+.+....+.. .+.+..||.++++........|..
T Consensus 117 g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski--t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~In 194 (327)
T KOG0643|consen 117 GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI--TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKIN 194 (327)
T ss_pred CcceEEEEEEccCChhhhcccCceEEecCCccce--eeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccc
Confidence 46899999984431 123444444443222 23334444444433 456678999998877777666666
Q ss_pred -eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc----------------------------------------
Q 024245 154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS---------------------------------------- 192 (270)
Q Consensus 154 -~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------------------------------- 192 (270)
+.+++|..+++ +++.|.+-++||+++-+.++++....
T Consensus 195 d~q~s~d~T~Fi--T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy 272 (327)
T KOG0643|consen 195 DLQFSRDRTYFI--TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY 272 (327)
T ss_pred cccccCCcceEE--ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence 99999998665 78899999999999988887776332
Q ss_pred -------CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 193 -------CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 193 -------~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
.+.+.|| -+.+.+++ |+|+ |. ..++|++||.|++.-...
T Consensus 273 h~i~eEEigrvkGH----FGPINsvA-fhPd---Gk-sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 273 HLIFEEEIGRVKGH----FGPINSVA-FHPD---GK-SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred HHHHHHHhcccccc----ccCcceeE-ECCC---Cc-ccccCCCCceEEEEEecc
Confidence 1122345 45788888 9995 55 899999999999986654
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4.9e-22 Score=142.88 Aligned_cols=225 Identities=16% Similarity=0.176 Sum_probs=161.6
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
.|..++.+++|.++ ..+++|+.||.|+++|+.++.... +..|. .+|.+|.+++ ..+.+++|+.|++|++||.+.
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~-igth~--~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ-IGTHD--EGIRCIEYSY--EVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee-eccCC--CceEEEEeec--cCCeEEEcccCccEEEEeccc
Confidence 38999999999874 578999999999999999876553 44566 7799999998 778999999999999999997
Q ss_pred CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-----eEecCCCCeEEEEecCC
Q 024245 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAVAGEQ 170 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~ 170 (270)
... ...+.... .+-++++..+ .......+..+.+||+++...........-. +++-|++..+++ ++-
T Consensus 126 ~~~----~~~~d~~k-kVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSi 197 (323)
T KOG1036|consen 126 KVV----VGTFDQGK-KVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSI 197 (323)
T ss_pred ccc----ccccccCc-eEEEEeccCC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEE--Eee
Confidence 432 22333222 2222332221 1222345566777888877655432222222 788887776664 667
Q ss_pred CceEEEEeCCCc----ceeeeeccCcCCCCCCcccCC-----CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 171 LSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKG-----RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 171 d~~i~iwd~~~~----~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
||.|.+=.+... +..+.|+ .|.... --.+.+++ |+|-. + .|+||+.||.|.+||+.+
T Consensus 198 eGRVavE~~d~s~~~~skkyaFk--------CHr~~~~~~~~~yPVNai~-Fhp~~--~--tfaTgGsDG~V~~Wd~~~- 263 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFK--------CHRLSEKDTEIIYPVNAIA-FHPIH--G--TFATGGSDGIVNIWDLFN- 263 (323)
T ss_pred cceEEEEccCCchHHhhhceeEE--------eeecccCCceEEEEeceeE-ecccc--c--eEEecCCCceEEEccCcc-
Confidence 899988776655 3445555 454322 23577888 99963 2 799999999999999998
Q ss_pred CcceeeeeccCCCeeEEEeecCCCcee
Q 024245 242 GIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+.+..+......|.+++|+.||..|.
T Consensus 264 rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 264 RKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred hhhhhhccCCCCceEEEEeccCCCeEE
Confidence 788888887778899999999998874
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=7.7e-23 Score=168.58 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=147.1
Q ss_pred ccccEEEEEEeCCCCEEEEec--CCCcEEEEeCCC------------CceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 17 HRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQ------------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
++..|.+++.+|+|..+|+|+ .|+.++||+.+. .+.+.....|. +.|.|+.|+| ||.+||+|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~--~sv~CVR~S~--dG~~lAsG 87 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD--GSVNCVRFSP--DGSYLASG 87 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc--CceeEEEECC--CCCeEeec
Confidence 456799999999999999999 899999998753 12334455666 7799999999 99999999
Q ss_pred eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecC
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA 158 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~ 158 (270)
++|+.|.+|+..... ....+...+.......+ .....+.+|.. ++|+|
T Consensus 88 SDD~~v~iW~~~~~~--~~~~fgs~g~~~~vE~w--------------------------k~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIG--SGTVFGSTGGAKNVESW--------------------------KVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred cCcceEEEeeecccC--Cccccccccccccccee--------------------------eEEEEEecCCCccceeccCC
Confidence 999999999987411 01111111111111111 12224556666 89999
Q ss_pred CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
++.+++ +++.|++|.||+.++.+.+.++. +|.. .+-.+. |.|. |+ |||+-+.|++|++|++
T Consensus 140 ~~~~lv--S~s~DnsViiwn~~tF~~~~vl~--------~H~s----~VKGvs-~DP~---Gk-y~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 140 DDSLLV--SVSLDNSVIIWNAKTFELLKVLR--------GHQS----LVKGVS-WDPI---GK-YFASQSDDRTLKVWRT 200 (942)
T ss_pred CccEEE--EecccceEEEEccccceeeeeee--------cccc----cccceE-ECCc---cC-eeeeecCCceEEEEEc
Confidence 997443 78889999999999999999999 7855 455555 9996 55 9999999999999997
Q ss_pred CCCCcceeeeeccC------CCeeEEEeecCCCcee
Q 024245 239 RNPGIPLTAMKVHL------EPGLECSMWRNPITMS 268 (270)
Q Consensus 239 ~~~~~~~~~~~~~~------~~v~~~~~s~~g~~ls 268 (270)
.+ ......+..+- ..+..+.|||||++|.
T Consensus 201 ~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 201 SD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cc-ceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence 76 55555554432 3567899999999975
No 99
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1e-22 Score=150.06 Aligned_cols=194 Identities=14% Similarity=0.237 Sum_probs=144.4
Q ss_pred CcccccccccccEEEEEEeCCC--CEEEEecCCCcEEEEeCCC----------------CceeEEEeecCCCcceEEEEE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQ----------------HRTVSSSWVHSAAHGIVSVAT 70 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~~~v~~~~~ 70 (270)
+.-...-+|.+.|+.+.-++-+ .+.++=+..|.|+||++.. .+++.++.+|..+ =++++|
T Consensus 142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E--Gy~LdW 219 (440)
T KOG0302|consen 142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE--GYGLDW 219 (440)
T ss_pred cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc--ceeeec
Confidence 3334455688888888888754 4677778899999999853 2466777888844 799999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC
Q 024245 71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (270)
Q Consensus 71 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (270)
+|... ..|+||..-+.|++|...++.... ... .+.+
T Consensus 220 Sp~~~-g~LlsGDc~~~I~lw~~~~g~W~v--------d~~-----------------------------------Pf~g 255 (440)
T KOG0302|consen 220 SPIKT-GRLLSGDCVKGIHLWEPSTGSWKV--------DQR-----------------------------------PFTG 255 (440)
T ss_pred ccccc-cccccCccccceEeeeeccCceee--------cCc-----------------------------------cccc
Confidence 99633 568888888899999998875421 000 1222
Q ss_pred CCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245 151 DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (270)
Q Consensus 151 ~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (270)
|.. ++|||....+++ +++.||+|+|||+|.+.....+..+ +| .+-+..+. |+...+ +||+
T Consensus 256 H~~SVEDLqWSptE~~vfa-ScS~DgsIrIWDiRs~~~~~~~~~k------Ah----~sDVNVIS-Wnr~~~----lLas 319 (440)
T KOG0302|consen 256 HTKSVEDLQWSPTEDGVFA-SCSCDGSIRIWDIRSGPKKAAVSTK------AH----NSDVNVIS-WNRREP----LLAS 319 (440)
T ss_pred cccchhhhccCCccCceEE-eeecCceEEEEEecCCCccceeEee------cc----CCceeeEE-ccCCcc----eeee
Confidence 333 779999988887 6677999999999988422222211 56 34577776 997544 9999
Q ss_pred ecCCCcEEEEEcCC--CCcceeeeeccCCCeeEEEeecCC
Q 024245 227 GYEDGSILVWDIRN--PGIPLTAMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 227 ~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~s~~g 264 (270)
|+.||+++|||++. .++++..++.|..+|++|.|+|..
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence 99999999999986 357999999999999999999843
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-20 Score=130.56 Aligned_cols=232 Identities=15% Similarity=0.162 Sum_probs=162.9
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce-----eEEEeecCCCcceEEEEEee--CCCCCEEEEEe-
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-----VSSSWVHSAAHGIVSVATGP--SIGLNKVISQG- 83 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s~~- 83 (270)
+.-+.|++.|.|.+|+|.|+++++|+.|..|++...+...+ -.++..|. +.|..++|.. ...+..|++++
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd--gtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD--GTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecC--CceeeeEEecCCCcCceEEEecCC
Confidence 44567899999999999999999999999999987654332 23567787 5599999964 22345666654
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC-----CCCC-----
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL-----CDSK----- 153 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----- 153 (270)
.|..|.+-|-..++ +...+.++..++..+-.-.............+++||++-...+...-. +-+.
T Consensus 161 gdc~iy~tdc~~g~----~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQ----GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred CcceEEEeecCCCC----cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 45566666776663 344666666665543322222222223344567788887766654221 1111
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
++..|.|+ ++ ++|..|.+..+||++-++.++.+. .| ...+.++. |+|. ..|+++++.|..|
T Consensus 237 v~vdpsgr-ll-~sg~~dssc~lydirg~r~iq~f~--------ph----sadir~vr-fsp~----a~yllt~syd~~i 297 (350)
T KOG0641|consen 237 VAVDPSGR-LL-ASGHADSSCMLYDIRGGRMIQRFH--------PH----SADIRCVR-FSPG----AHYLLTCSYDMKI 297 (350)
T ss_pred EEECCCcc-ee-eeccCCCceEEEEeeCCceeeeeC--------CC----ccceeEEE-eCCC----ceEEEEecccceE
Confidence 78889996 34 489999999999999999999998 46 34577777 9984 2399999999999
Q ss_pred EEEEcCCC---CcceeeeeccCCCeeEEEeecCC-Ccee
Q 024245 234 LVWDIRNP---GIPLTAMKVHLEPGLECSMWRNP-ITMS 268 (270)
Q Consensus 234 ~vwd~~~~---~~~~~~~~~~~~~v~~~~~s~~g-~~ls 268 (270)
++-|+... .-++.....|++.+..+.|+|.. .+||
T Consensus 298 kltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 298 KLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred EEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 99998742 23555666799999999999965 4444
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=146.34 Aligned_cols=226 Identities=13% Similarity=0.181 Sum_probs=163.0
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeC------CC--------------------------------
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT------VQ-------------------------------- 49 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~------~~-------------------------------- 49 (270)
.+++.++.||.+.|+++.|++.+.++++++.|++-.||.. ..
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 4688999999999999999999999999999999999972 11
Q ss_pred --CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCC-ccce
Q 024245 50 --HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANA 126 (270)
Q Consensus 50 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 126 (270)
..++..+.+|. +.|.+..|.. .|+.+++++.|.+..+||+++++.+. .+.++.......+..... ....
T Consensus 260 tiRvPl~~ltgH~--~vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtge~v~----~LtGHd~ELtHcstHptQrLVvT 331 (481)
T KOG0300|consen 260 TIRVPLMRLTGHR--AVVSACDWLA--GGQQMVTASWDRTANLWDVETGEVVN----ILTGHDSELTHCSTHPTQRLVVT 331 (481)
T ss_pred eeeeeeeeeeccc--cceEehhhhc--CcceeeeeeccccceeeeeccCceec----cccCcchhccccccCCcceEEEE
Confidence 01233566776 6699999999 99999999999999999999997655 444443332222222211 1122
Q ss_pred ecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCccc
Q 024245 127 KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSS 201 (270)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~ 201 (270)
..-.....+||++..-.....++||.. +.|..+.+ ++ +|++|.+|++||++..+ ++.++..
T Consensus 332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vV--SgSDDrTvKvWdLrNMRsplATIRt----------- 397 (481)
T KOG0300|consen 332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VV--SGSDDRTVKVWDLRNMRSPLATIRT----------- 397 (481)
T ss_pred eccCceeEeccchhhcceeeeecccccceeEEEEecCCc-ee--ecCCCceEEEeeeccccCcceeeec-----------
Confidence 333445567888755555668899988 67777775 32 79999999999998765 6677762
Q ss_pred CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee-----eeeccCCCeeEEEeecCC
Q 024245 202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-----AMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 202 ~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~v~~~~~s~~g 264 (270)
...+..++ .+.. ...|+.--.+..|++||+.. ..+. .-.+|...|.|++|..+-
T Consensus 398 --dS~~NRva-vs~g----~~iIAiPhDNRqvRlfDlnG--~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 398 --DSPANRVA-VSKG----HPIIAIPHDNRQVRLFDLNG--NRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred --CCccceeE-eecC----CceEEeccCCceEEEEecCC--CccccCCcccccccceeeeeeeccccC
Confidence 33455555 5532 22788888888999999984 3333 335888999999998654
No 102
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-22 Score=153.86 Aligned_cols=223 Identities=14% Similarity=0.164 Sum_probs=176.4
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
.-.|++......++++|+..+.|+|||++...+.+.++.|. +.|+++.++. ...+|++++..|.|.|-.+.++...
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--stvt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--STVTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc--ceeEEEEecC--CcceeEEeccCCcEEEEecccCccc
Confidence 33455544555899999999999999999777888888888 6699999998 7799999999999999999887653
Q ss_pred CCCcccee-cccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceE
Q 024245 100 SNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEV 174 (270)
Q Consensus 100 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i 174 (270)
. .+... +.......++...........+.+.+.+||+.....+......|.. ++|+|..+.+++..| .|..|
T Consensus 157 t--~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki 233 (673)
T KOG4378|consen 157 T--TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKI 233 (673)
T ss_pred c--ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceE
Confidence 3 22222 2222233444445555566777888899999988877777777776 999999998887555 69999
Q ss_pred EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (270)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 254 (270)
.+||.+.......+.- .....+++ |+| +|. +|++|...|.|..||++....|+..+..|...
T Consensus 234 ~~yD~~s~~s~~~l~y-------------~~Plstva-f~~---~G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 234 NIYDIRSQASTDRLTY-------------SHPLSTVA-FSE---CGT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred EEeecccccccceeee-------------cCCcceee-ecC---Cce-EEEeecCCceEEEEecccCCCCceEeeecccc
Confidence 9999998877777662 23566676 998 465 99999999999999999988999999999999
Q ss_pred eeEEEeecCCCce
Q 024245 255 GLECSMWRNPITM 267 (270)
Q Consensus 255 v~~~~~s~~g~~l 267 (270)
|++++|-|...+|
T Consensus 296 Vt~vafq~s~tvl 308 (673)
T KOG4378|consen 296 VTRVAFQPSPTVL 308 (673)
T ss_pred eeEEEeeecceee
Confidence 9999999876443
No 103
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.5e-21 Score=138.99 Aligned_cols=204 Identities=12% Similarity=0.144 Sum_probs=142.9
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+.++.+.||...|+.++.+|-+..+++++.|++|++||++..++...+.... -..++|.| .|-++|++...+.
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~----~pi~AfDp--~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG----RPIAAFDP--EGLIFALANGSEL 163 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC----CcceeECC--CCcEEEEecCCCe
Confidence 36789999999999999999988999999999999999999888887776554 24688999 9889998888889
Q ss_pred EEEEEccCCccCCCCccceecc-cceEEEEeeccCCccce--ecC-CCCceEEEeccCceeeeccCCCCC-------eEe
Q 024245 88 VKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANA--KQA-NEPKDCYEREVGETVDTDSLCDSK-------DDV 156 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 156 (270)
|++||++.-.. .|...+.-. ......-.+.+++++.. +.+ .+...+.|.-++..+. .+.++.. .+|
T Consensus 164 IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 164 IKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-TFSGYPNAGNLPLSATF 240 (311)
T ss_pred EEEEEecccCC--CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-eEeeccCCCCcceeEEE
Confidence 99999987543 333333322 11122222333333332 222 3334456666665332 3333322 789
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
+||++.++ +|+.||+|.+|+++++..+..+.. . ..+.+.++. |+|. +..-.+.+..+.+|
T Consensus 241 tPds~Fvl--~gs~dg~i~vw~~~tg~~v~~~~~--------~---~~~~~~~~~-fnP~------~~mf~sa~s~l~fw 300 (311)
T KOG1446|consen 241 TPDSKFVL--SGSDDGTIHVWNLETGKKVAVLRG--------P---NGGPVSCVR-FNPR------YAMFVSASSNLVFW 300 (311)
T ss_pred CCCCcEEE--EecCCCcEEEEEcCCCcEeeEecC--------C---CCCCccccc-cCCc------eeeeeecCceEEEE
Confidence 99998665 688899999999999999999983 1 244566776 9995 44444455678888
Q ss_pred EcCC
Q 024245 237 DIRN 240 (270)
Q Consensus 237 d~~~ 240 (270)
=...
T Consensus 301 ~p~~ 304 (311)
T KOG1446|consen 301 LPDE 304 (311)
T ss_pred eccc
Confidence 6553
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=2.1e-21 Score=145.65 Aligned_cols=197 Identities=14% Similarity=0.172 Sum_probs=152.9
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
.....+.|+++|+.+..+|.|.||++++.|+.....|++++.++.........-.+++.+|+| ||..|.+|..|+.|+
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp--DgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP--DGLIFGTGTPDGVVK 372 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC--CceEEeccCCCceEE
Confidence 445677899999999999999999999999999999999998887765543335589999999 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 169 (270)
+||+.++.... .++++...+.. ++|+-+| |+++ ++.
T Consensus 373 iwdlks~~~~a----~Fpght~~vk~--------------------------------------i~FsENG-Y~La-t~a 408 (506)
T KOG0289|consen 373 IWDLKSQTNVA----KFPGHTGPVKA--------------------------------------ISFSENG-YWLA-TAA 408 (506)
T ss_pred EEEcCCccccc----cCCCCCCceeE--------------------------------------EEeccCc-eEEE-EEe
Confidence 99999875432 44444444432 4578888 5555 456
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC-CCcceeee
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PGIPLTAM 248 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~-~~~~~~~~ 248 (270)
+|+.|++||+|..+...++..+ ....+.++. |.+. |. +|+.++.|=.|++++-.+ ...++..+
T Consensus 409 dd~~V~lwDLRKl~n~kt~~l~-----------~~~~v~s~~-fD~S---Gt-~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 409 DDGSVKLWDLRKLKNFKTIQLD-----------EKKEVNSLS-FDQS---GT-YLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred cCCeEEEEEehhhcccceeecc-----------ccccceeEE-EcCC---CC-eEEeecceeEEEEEecccccceeeehh
Confidence 7899999999998887777731 122467776 8875 44 899998887777777443 14577778
Q ss_pred eccCCCeeEEEeecCCCcee
Q 024245 249 KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 249 ~~~~~~v~~~~~s~~g~~ls 268 (270)
..|.+..+.+.|....+++-
T Consensus 473 ~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 473 ADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred hhcccccceeeecccceEEe
Confidence 88888899999988877763
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.8e-21 Score=135.79 Aligned_cols=215 Identities=17% Similarity=0.170 Sum_probs=149.1
Q ss_pred CcccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCcee--EEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
+++.+|.||+++|+.++|.. .|.+||++++||.|.||.-++++-. .....|. ..|++++|.|..-|-.|++++.
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~--~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS--ASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc--ccceeecccccccceEEEEeeC
Confidence 78999999999999999976 8999999999999999998887543 3445566 7799999999766778999999
Q ss_pred CCcEEEEEccCC-ccCCCCccceecccceEEEEeeccC--Cc-------------cceecCCCCceEEEeccCc-eeeec
Q 024245 85 DGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKE--PY-------------ANAKQANEPKDCYEREVGE-TVDTD 147 (270)
Q Consensus 85 d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~ 147 (270)
||.|.|.+.+.. .... ......+.......+.+.. +. .........+.+|....++ .....
T Consensus 125 DG~vsvl~~~~~g~w~t--~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~ 202 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTT--SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT 202 (299)
T ss_pred CCcEEEEEEcCCCCccc--hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh
Confidence 999999998765 2211 1122233333333333322 11 1122223445567666654 33345
Q ss_pred cCCCCC----eEecCCC--CeEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245 148 SLCDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219 (270)
Q Consensus 148 ~~~~~~----~~~s~~~--~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~ 219 (270)
+.+|.. ++|.|.- ....+++++.||++.||-.+... ...++. ......++.+. |++.++
T Consensus 203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-----------~~f~~~~w~vS-WS~sGn- 269 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-----------EEFPDVVWRVS-WSLSGN- 269 (299)
T ss_pred hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc-----------ccCCcceEEEE-Eecccc-
Confidence 888888 8999864 22334588899999999876221 111221 11355789998 999654
Q ss_pred CceEEEEecCCCcEEEEEcCCCCc
Q 024245 220 GFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 220 g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
.|+.++.|+.|.+|.-...++
T Consensus 270 ---~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 270 ---ILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred ---EEEEecCCcEEEEEEeCCCCc
Confidence 999999999999998665343
No 106
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=148.18 Aligned_cols=225 Identities=14% Similarity=0.198 Sum_probs=157.2
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCC-EEEEEeCCCcEEEEEcc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIE 94 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~ 94 (270)
.+.|+++.|+|...+|++|+.|+.++||.+... ..++.+.... .+|.+.+|.| +|. .+++++....+..||+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecC--CCceEEEecccceEEEEeecc
Confidence 478999999999999999999999999998643 4555555555 7799999999 888 88999999999999999
Q ss_pred CCccCCCCccceeccc-ceEEEEeeccCCccceecCCC---CceEEEeccCceeee-ccCCCCC-eEecCCCCeEEEEec
Q 024245 95 NGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDT-DSLCDSK-DDVPAEGPKYMAVAG 168 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~-~~~s~~~~~~~~~~~ 168 (270)
+.+..+ +....+.. .....+.+.. ...+++..+ .+.+....+++.+.. .+.|... ++|+.+++.+++ +|
T Consensus 289 ~ak~~k--~~~~~g~e~~~~e~FeVSh--d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~-~~ 363 (514)
T KOG2055|consen 289 TAKVTK--LKPPYGVEEKSMERFEVSH--DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA-SG 363 (514)
T ss_pred cccccc--ccCCCCcccchhheeEecC--CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE-Ec
Confidence 987654 22222222 1122222222 222222222 223333333333321 3333333 899999987776 45
Q ss_pred CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC-----CCc
Q 024245 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-----PGI 243 (270)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~-----~~~ 243 (270)
+ +|.|.+||++...+++++... +.. .-++++ .++ +|. |||+|+..|.|.|||..+ ..+
T Consensus 364 ~-~GeV~v~nl~~~~~~~rf~D~---------G~v--~gts~~-~S~---ng~-ylA~GS~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 364 G-TGEVYVWNLRQNSCLHRFVDD---------GSV--HGTSLC-ISL---NGS-YLATGSDSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred C-CceEEEEecCCcceEEEEeec---------Ccc--ceeeee-ecC---CCc-eEEeccCcceEEEeccchhhccCCCC
Confidence 4 699999999999999998842 112 222333 555 455 999999999999999654 256
Q ss_pred ceeeeeccCCCeeEEEeecCCCcee
Q 024245 244 PLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 244 ~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
|+..+..-...|++++|+||+++|.
T Consensus 427 Pik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 427 PIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred chhhhhhhheeeeeeeeCcchhhhh
Confidence 7888877788999999999998864
No 107
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.2e-21 Score=151.88 Aligned_cols=205 Identities=17% Similarity=0.279 Sum_probs=170.2
Q ss_pred Cccccccc-ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE-EeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 9 DPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 9 ~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
+.+..+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|..+ |..++|++ +++++++|+.|+
T Consensus 250 k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe--VCgLkws~--d~~~lASGgnDN 323 (484)
T KOG0305|consen 250 KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE--VCGLKWSP--DGNQLASGGNDN 323 (484)
T ss_pred cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccce--eeeeEECC--CCCeeccCCCcc
Confidence 55677888 99999999998 66899999999999999988765544 7788854 99999999 999999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-CC---ceEEEeccCceeeeccCCCCC--eEecCCC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EP---KDCYEREVGETVDTDSLCDSK--DDVPAEG 160 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~--~~~s~~~ 160 (270)
.+.|||.... .|.+.+..+...+.++.+++......+..+ .. ..+|++.++..+.....+-+- +.|++..
T Consensus 324 ~~~Iwd~~~~----~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 324 VVFIWDGLSP----EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKY 399 (484)
T ss_pred ceEeccCCCc----cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCC
Confidence 9999999544 556788888888888887776665544443 33 455788888877776666655 9999999
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+.++.+-|..++.|.||+..+.+.+..+. +|.. .+..++ ++|+ |. .+++|+.|.++++|++-.
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~--------gH~~----RVl~la-~SPd---g~-~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELL--------GHTS----RVLYLA-LSPD---GE-TIVTGAADETLRFWNLFD 462 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeec--------CCcc----eeEEEE-ECCC---CC-EEEEecccCcEEeccccC
Confidence 88998888889999999999999888888 8844 588888 9995 55 999999999999999987
No 108
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.1e-20 Score=144.33 Aligned_cols=236 Identities=11% Similarity=0.061 Sum_probs=149.9
Q ss_pred CcccccccccccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEE-EeCCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDG 86 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d~ 86 (270)
++++.+.++. .+.+++|+|+++.+ ++++.++.|++||..+++.+..+..+. .+..++|+| +++.+++ ++.++
T Consensus 22 ~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~--~g~~l~~~~~~~~ 95 (300)
T TIGR03866 22 EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP---DPELFALHP--NGKILYIANEDDN 95 (300)
T ss_pred ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC---CccEEEECC--CCCEEEEEcCCCC
Confidence 4666776554 46789999999876 567789999999999988877766543 256789999 8887754 45689
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC--CCceEEEeccCceeeeccCCCCC--eEecCCCCe
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGETVDTDSLCDSK--DDVPAEGPK 162 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~ 162 (270)
.|++||+.+.+... .+.... ....+.+............ .....|+..+.+.......+... ++|+|+++.
T Consensus 96 ~l~~~d~~~~~~~~----~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 170 (300)
T TIGR03866 96 LVTVIDIETRKVLA----EIPVGV-EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKE 170 (300)
T ss_pred eEEEEECCCCeEEe----EeeCCC-CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCE
Confidence 99999998865432 222111 1111222222211111111 22344576665544333222222 899999987
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
+++ ++..++.|++||+++++.+..+...... .+. .......+. |+|+ ++..+++.+.++.|.+||+++ +
T Consensus 171 l~~-~~~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~--~~~~~~~i~-~s~d---g~~~~~~~~~~~~i~v~d~~~-~ 239 (300)
T TIGR03866 171 LWV-SSEIGGTVSVIDVATRKVIKKITFEIPG---VHP--EAVQPVGIK-LTKD---GKTAFVALGPANRVAVVDAKT-Y 239 (300)
T ss_pred EEE-EcCCCCEEEEEEcCcceeeeeeeecccc---ccc--ccCCccceE-ECCC---CCEEEEEcCCCCeEEEEECCC-C
Confidence 765 5556899999999998877766521000 000 011233455 8884 553455556677899999987 6
Q ss_pred cceeeeeccCCCeeEEEeecCCCce
Q 024245 243 IPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+.+..+. +...+.+++|+|+|++|
T Consensus 240 ~~~~~~~-~~~~~~~~~~~~~g~~l 263 (300)
T TIGR03866 240 EVLDYLL-VGQRVWQLAFTPDEKYL 263 (300)
T ss_pred cEEEEEE-eCCCcceEEECCCCCEE
Confidence 6655543 44579999999999876
No 109
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=1.5e-22 Score=150.69 Aligned_cols=232 Identities=15% Similarity=0.211 Sum_probs=179.3
Q ss_pred CCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 6 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
.|-+....+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+.. ++|+++.|.+ ++.++++++
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~--g~it~~d~d~--~~~~~iAas 238 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL--GNITSIDFDS--DNKHVIAAS 238 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC--CCcceeeecC--CCceEEeec
Confidence 3446788899999999999999998899999999999999987665 667777776 6699999999 889999999
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc-cceecCCCCceEEEeccCceeeeccCCCCC--eEecCCC
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG 160 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~ 160 (270)
.|+.+++|++...+... ++.+|....+...+..... .......-....||+....+.+..+.+..- ++.+ +
T Consensus 239 ~d~~~r~Wnvd~~r~~~----TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 239 NDKNLRLWNVDSLRLRH----TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--I 312 (459)
T ss_pred CCCceeeeeccchhhhh----hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--c
Confidence 99999999999887644 6666666655544433333 222233334556899888888877776655 5555 2
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
. .+++|..|+.|++||.++..+...... .+.+.++. .+++ |. .|.+++.|.++.+.|+++
T Consensus 313 -~-~~~SgH~DkkvRfwD~Rs~~~~~sv~~-------------gg~vtSl~-ls~~---g~-~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 313 -S-DVISGHFDKKVRFWDIRSADKTRSVPL-------------GGRVTSLD-LSMD---GL-ELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred -e-eeeecccccceEEEeccCCceeeEeec-------------CcceeeEe-eccC---Ce-EEeeecCCCceeeeeccc
Confidence 2 334899999999999999999998882 34678887 7773 44 788889999999999998
Q ss_pred CCcceeeeecc----CCCeeEEEeecCCCcee
Q 024245 241 PGIPLTAMKVH----LEPGLECSMWRNPITMS 268 (270)
Q Consensus 241 ~~~~~~~~~~~----~~~v~~~~~s~~g~~ls 268 (270)
.+....+... ....+.+.|||++.|+.
T Consensus 373 -~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 373 -KEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred -ccEEEEeeccccccccccceeEECCCCceee
Confidence 6666666532 23578899999999975
No 110
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=4.4e-21 Score=152.93 Aligned_cols=223 Identities=14% Similarity=0.250 Sum_probs=171.0
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
++.||+..|+++++|.+...++||+. +.|++|+..+.++++++... .+.+..|.| .++++++|...|.+.+||
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~----y~l~~~Fvp--gd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG----YILASKFVP--GDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc----cEEEEEecC--CCceEEEeccCCceEEEE
Confidence 46689999999999999888888775 57999999999999998754 489999999 889999999999999999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCce----e-e-------eccCCCCC---eEe
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGET----V-D-------TDSLCDSK---DDV 156 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~-~-------~~~~~~~~---~~~ 156 (270)
+.+..... .++.+......++......+.. ......+.+|+..--.. . + .+++-... +.+
T Consensus 441 laS~~l~E----ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~ 516 (888)
T KOG0306|consen 441 LASASLVE----TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV 516 (888)
T ss_pred eehhhhhh----hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence 99887654 5555555554444444333322 22234455565532111 1 0 11111222 889
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
||||+++. .+=-|.+++||-+.+-+....+. ||.. ++.++. .+|+++ +++|||.|.+|++|
T Consensus 517 Spdgk~La--VsLLdnTVkVyflDtlKFflsLY--------GHkL----PV~smD-IS~DSk----livTgSADKnVKiW 577 (888)
T KOG0306|consen 517 SPDGKLLA--VSLLDNTVKVYFLDTLKFFLSLY--------GHKL----PVLSMD-ISPDSK----LIVTGSADKNVKIW 577 (888)
T ss_pred cCCCcEEE--EEeccCeEEEEEecceeeeeeec--------cccc----ceeEEe-ccCCcC----eEEeccCCCceEEe
Confidence 99998654 35579999999999999888888 8854 678888 999644 99999999999999
Q ss_pred EcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245 237 DIRNPGIPLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 237 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
-+.- |.|-..+-+|.+.|.++.|-|+...
T Consensus 578 GLdF-GDCHKS~fAHdDSvm~V~F~P~~~~ 606 (888)
T KOG0306|consen 578 GLDF-GDCHKSFFAHDDSVMSVQFLPKTHL 606 (888)
T ss_pred cccc-chhhhhhhcccCceeEEEEccccee
Confidence 9998 8999999999999999999996543
No 111
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=140.69 Aligned_cols=233 Identities=15% Similarity=0.136 Sum_probs=154.9
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
++-.++. |.. ..|+.|++.|.+||+|..||.|.|||+.+...-+.+.+|. .+|.+++|++ +|.+|+|+|.|..|
T Consensus 16 el~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~--~pi~sl~WS~--dgr~LltsS~D~si 89 (405)
T KOG1273|consen 16 ELTHTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV--RPITSLCWSR--DGRKLLTSSRDWSI 89 (405)
T ss_pred hhceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc--cceeEEEecC--CCCEeeeecCCcee
Confidence 3445554 333 7899999999999999999999999999988888899999 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCcee--eeccCCCCC-----eEecCCCC
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV--DTDSLCDSK-----DDVPAEGP 161 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~s~~~~ 161 (270)
.+||+..+.+..+..+ ..+...+.+.+................+.++...... ...-.+..+ ..|.+.|+
T Consensus 90 ~lwDl~~gs~l~rirf---~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRF---DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred EEEeccCCCceeEEEc---cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC
Confidence 9999999976542111 1122223233322222222222233333344332111 111111111 34788898
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
+++ +|...|.+.++|..+.+++..++- . ....+-.+. ++- .|+ +|+.-+.|..|+.|+++..
T Consensus 167 yIi--tGtsKGkllv~~a~t~e~vas~ri--------t---s~~~IK~I~-~s~---~g~-~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 167 YII--TGTSKGKLLVYDAETLECVASFRI--------T---SVQAIKQII-VSR---KGR-FLIINTSDRVIRTYEISDI 228 (405)
T ss_pred EEE--EecCcceEEEEecchheeeeeeee--------c---hheeeeEEE-Eec---cCc-EEEEecCCceEEEEehhhh
Confidence 776 566789999999999999888872 1 112344444 554 456 9999999999999998731
Q ss_pred ------Cc--ceeeeec--cCCCeeEEEeecCCCcee
Q 024245 242 ------GI--PLTAMKV--HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 242 ------~~--~~~~~~~--~~~~v~~~~~s~~g~~ls 268 (270)
++ +.+.+.. ....=.+++||.||.|+.
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~ 265 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVC 265 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEE
Confidence 11 1222221 122335789999999986
No 112
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=9.6e-22 Score=156.23 Aligned_cols=232 Identities=13% Similarity=0.139 Sum_probs=172.6
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC-CCCEEEEEeCCCcEEEEE
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d~~i~~wd 92 (270)
..+.+..+++++.+|+|++||+|..-|+++||++.+-+....+..|. ..|.|+.|+... ..++|++++.|..|++||
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe--sEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE--SEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc--ceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 34456789999999999999999999999999999988888888998 559999998621 235788999999999999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccC------CCCC---eEecCCCC
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSL------CDSK---DDVPAEGP 161 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~---~~~s~~~~ 161 (270)
+...- .++.++.++...+..+.+.......-....+.+.. ++......-...+. ++.. ++..|..+
T Consensus 533 v~rny---~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 533 VKRNY---DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred ccccc---chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence 97654 33456777776666666665543332222222222 22222111111111 1222 78888887
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
+++ +++.|..|+|||+.+++..+.|+. .|. ..+....+. ..|.+ - ||++...|.++.++|.-+
T Consensus 610 ~v~--t~cQDrnirif~i~sgKq~k~FKg-------s~~--~eG~lIKv~-lDPSg---i-Y~atScsdktl~~~Df~s- 672 (1080)
T KOG1408|consen 610 LVV--TVCQDRNIRIFDIESGKQVKSFKG-------SRD--HEGDLIKVI-LDPSG---I-YLATSCSDKTLCFVDFVS- 672 (1080)
T ss_pred eEE--EEecccceEEEeccccceeeeecc-------ccc--CCCceEEEE-ECCCc---c-EEEEeecCCceEEEEecc-
Confidence 655 566799999999999999999994 232 245566666 88864 3 999999999999999999
Q ss_pred CcceeeeeccCCCeeEEEeecCCCce
Q 024245 242 GIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
++++..+.||+..|+.+.|.+|-+.|
T Consensus 673 gEcvA~m~GHsE~VTG~kF~nDCkHl 698 (1080)
T KOG1408|consen 673 GECVAQMTGHSEAVTGVKFLNDCKHL 698 (1080)
T ss_pred chhhhhhcCcchheeeeeecccchhh
Confidence 99999999999999999999997664
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=4.7e-21 Score=137.56 Aligned_cols=184 Identities=18% Similarity=0.280 Sum_probs=131.3
Q ss_pred ccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCC-CceeE-EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 15 ~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~-~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
...++.|.+|+||| ...+++++|.||+||+|+++. +..+. ....|. ++|.+++|+. +|..+++|+.|+.+++|
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~--~PvL~v~Wsd--dgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD--GPVLDVCWSD--DGSKVFSGGCDKQAKLW 99 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC--CCeEEEEEcc--CCceEEeeccCCceEEE
Confidence 34578999999999 556777999999999999986 33332 333455 7799999999 99999999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d 171 (270)
|+.+++.. .+..+......+. |-+...+-++++|+.|
T Consensus 100 DL~S~Q~~-----~v~~Hd~pvkt~~--------------------------------------wv~~~~~~cl~TGSWD 136 (347)
T KOG0647|consen 100 DLASGQVS-----QVAAHDAPVKTCH--------------------------------------WVPGMNYQCLVTGSWD 136 (347)
T ss_pred EccCCCee-----eeeecccceeEEE--------------------------------------EecCCCcceeEecccc
Confidence 99998532 3333333333222 2222233345589999
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec-
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV- 250 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~- 250 (270)
.+|+.||+|...++.++.. ...++++....| +++.+..++.|.+|+++++......+..
T Consensus 137 KTlKfWD~R~~~pv~t~~L-------------PeRvYa~Dv~~p-------m~vVata~r~i~vynL~n~~te~k~~~Sp 196 (347)
T KOG0647|consen 137 KTLKFWDTRSSNPVATLQL-------------PERVYAADVLYP-------MAVVATAERHIAVYNLENPPTEFKRIESP 196 (347)
T ss_pred cceeecccCCCCeeeeeec-------------cceeeehhccCc-------eeEEEecCCcEEEEEcCCCcchhhhhcCc
Confidence 9999999999999998884 234555442333 8899999999999999875443333321
Q ss_pred cCCCeeEEEeecCCC
Q 024245 251 HLEPGLECSMWRNPI 265 (270)
Q Consensus 251 ~~~~v~~~~~s~~g~ 265 (270)
-+-.+.+|+..+|..
T Consensus 197 Lk~Q~R~va~f~d~~ 211 (347)
T KOG0647|consen 197 LKWQTRCVACFQDKD 211 (347)
T ss_pred ccceeeEEEEEecCC
Confidence 223567777766543
No 114
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.9e-21 Score=151.42 Aligned_cols=240 Identities=18% Similarity=0.184 Sum_probs=159.4
Q ss_pred CCCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 4 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
||.|-.+-..++||++.|++++..|.|.+|++|+.||+|+||.+.++.|++++... +.|.+|+|+|..+-..|+++-
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEe
Confidence 57777788889999999999999999999999999999999999999999999876 559999999943322344443
Q ss_pred CCCcEEEEEccCCccCC-----CCccceec------------------cc----------ceEEEEeeccCCccce--ec
Q 024245 84 RDGTVKCWDIENGGLSS-----NPSLTIKT------------------NS----------YHFCKLSLVKEPYANA--KQ 128 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~-----~~~~~~~~------------------~~----------~~~~~~~~~~~~~~~~--~~ 128 (270)
+..+.+-+..-|..+. .++...+. .. .....+.......... ..
T Consensus 463 -~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 463 -GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred -cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 3446665543331110 00111100 00 0011111111111111 11
Q ss_pred CCC--CceEEEeccCceeee--ccCCCCC-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCC
Q 024245 129 ANE--PKDCYEREVGETVDT--DSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG 203 (270)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~--~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~ 203 (270)
.++ .+.+.++........ ...|+.. +.|+|...++++++ ...|+|||+..++.++++.. .
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~t------------g 606 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLT------------G 606 (733)
T ss_pred CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhc------------C
Confidence 111 122233333322211 2222333 89999999998754 37899999998888887773 2
Q ss_pred CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
.-.+..++ .+|. |. -|+.|+.|+.+..+|+....++.+++.-|...+++++|++.-.++
T Consensus 607 ~kwiS~ms-ihp~---GD-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 607 SKWISSMS-IHPN---GD-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLF 665 (733)
T ss_pred Ceeeeeee-ecCC---CC-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccccee
Confidence 33566776 8884 44 799999999999999998788999999999999999998765444
No 115
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=8.6e-22 Score=138.89 Aligned_cols=250 Identities=25% Similarity=0.332 Sum_probs=168.6
Q ss_pred CCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 5 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
+.||.|...|++|.+.|+++.|-.+++ |.+|...|.|++|++.+.+....+..+.. ..|+.+...| + ..+.+-+.
T Consensus 1 ~~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p--~-d~l~tqgR 75 (323)
T KOG0322|consen 1 MVPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIP--N-DSLDTQGR 75 (323)
T ss_pred CCCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecC--C-cchhhcCC
Confidence 357799999999999999999988775 88999999999999999888888874433 6689999888 6 78999999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccc--ee--cCCCCceE--EEeccCceeeec---cCCCCC--
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN--AK--QANEPKDC--YEREVGETVDTD---SLCDSK-- 153 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~--~~~~~~~~~~~~---~~~~~~-- 153 (270)
|..+.+|++..+..+. +..+..+...+|.++....+... .. -..+.... -|......+... ..+...
T Consensus 76 d~~L~lw~ia~s~~i~--i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFIS--IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred CceEEEEEccCcceEE--EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 9999999998766544 44455666777777766544332 11 11111111 111111111110 111111
Q ss_pred eEec---CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc--CCCCCCcccC--------------------------
Q 024245 154 DDVP---AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--CGGSPNFSSK-------------------------- 202 (270)
Q Consensus 154 ~~~s---~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~h~~~-------------------------- 202 (270)
+++. .++.++++.+|.++|.+.+||+.++..+..++... ......|..+
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 4554 45778888899999999999999874433332100 0000001000
Q ss_pred ----------------CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245 203 ----------------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 203 ----------------~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
.+.-+..+. ..| |++ .+||++-|+.|+||..++ .+++..++.|++.|++++|+|+..+
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvr-IRp---D~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVR-IRP---DGK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred eccccCcccccceEEecCCCccceE-Ecc---CCc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCch
Confidence 000112222 444 565 999999999999999999 9999999999999999999999655
Q ss_pred e
Q 024245 267 M 267 (270)
Q Consensus 267 l 267 (270)
|
T Consensus 308 m 308 (323)
T KOG0322|consen 308 M 308 (323)
T ss_pred h
Confidence 4
No 116
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=7.9e-22 Score=145.49 Aligned_cols=172 Identities=17% Similarity=0.332 Sum_probs=130.1
Q ss_pred CCcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCcee---EEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTV---SSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
.+|+.++.+|...=++++||| ....|++|.--+.|++|...++... ..+.+|. ..|..++|+|.. .+.|+|||
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~--~SVEDLqWSptE-~~vfaScS 277 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT--KSVEDLQWSPTE-DGVFASCS 277 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccc--cchhhhccCCcc-CceEEeee
Confidence 478999999999999999999 2236888988899999999887543 2455677 679999999963 47899999
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 163 (270)
-||+|+|||++.+.... ....+.+...+.. +.|+..-. +
T Consensus 278 ~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNV--------------------------------------ISWnr~~~-l 316 (440)
T KOG0302|consen 278 CDGSIRIWDIRSGPKKA--AVSTKAHNSDVNV--------------------------------------ISWNRREP-L 316 (440)
T ss_pred cCceEEEEEecCCCccc--eeEeeccCCceee--------------------------------------EEccCCcc-e
Confidence 99999999999884322 2222333322222 33555555 4
Q ss_pred EEEecCCCceEEEEeCCC---cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 164 MAVAGEQLSEVEIWDLNT---AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
| ++|++||+++|||+|. ++++..|+ -| ...++++. |+|.+ .. .|++++.|..|.+||+..
T Consensus 317 L-asG~DdGt~~iwDLR~~~~~~pVA~fk--------~H----k~pItsie-W~p~e--~s-~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 317 L-ASGGDDGTLSIWDLRQFKSGQPVATFK--------YH----KAPITSIE-WHPHE--DS-VIAASGEDNQITIWDLSV 379 (440)
T ss_pred e-eecCCCceEEEEEhhhccCCCcceeEE--------ec----cCCeeEEE-ecccc--Cc-eEEeccCCCcEEEEEeec
Confidence 4 5899999999999985 45677777 45 55788998 99973 33 899999999999999864
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=2.7e-21 Score=145.86 Aligned_cols=235 Identities=19% Similarity=0.270 Sum_probs=162.3
Q ss_pred ccccccccccEEEEEEeCCC--CEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 11 VAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
....+-+.+.|++++|+|.. +++|+|+.-|+|-+||+... ..+..+..|. .+|.+|.|+|. +...+++.|.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs--~~Vs~l~F~P~-n~s~i~ssSy 255 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS--GPVSGLKFSPA-NTSQIYSSSY 255 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC--ccccceEecCC-Chhheeeecc
Confidence 34456688999999999943 58999999999999999532 2344455566 77999999996 4478999999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
||+|++-|++++.... +.........++.+.+........ ...-+....||.+....-...+.-|.. ++++|.
T Consensus 256 DGtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred CceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 9999999999875432 444444444454444433332222 222234577888888776666666655 999999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeee--eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTR--LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
.+++++ +++.|++.+|||+|.-..... +. ..+....|.+.. |+|+ +| .|+|.+.|..|+|||
T Consensus 334 ~p~~la-T~s~D~T~kIWD~R~l~~K~sp~ls----------t~~HrrsV~sAy-FSPs--~g--tl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 334 CPWFLA-TASLDQTAKIWDLRQLRGKASPFLS----------TLPHRRSVNSAY-FSPS--GG--TLLTTCQDNEIRVFD 397 (498)
T ss_pred Cchhee-ecccCcceeeeehhhhcCCCCccee----------cccccceeeeeE-EcCC--CC--ceEeeccCCceEEee
Confidence 998887 677899999999986543332 11 112345677776 9997 44 599999999999999
Q ss_pred cC---CCCcceeeeeccCC------CeeEEEeecCCCce
Q 024245 238 IR---NPGIPLTAMKVHLE------PGLECSMWRNPITM 267 (270)
Q Consensus 238 ~~---~~~~~~~~~~~~~~------~v~~~~~s~~g~~l 267 (270)
.. ....+..++. |.. .....+|.||..+|
T Consensus 398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred cccccccCCccceee-ccCcccccccchhheeCCCccEE
Confidence 84 2245555554 331 23456788876665
No 118
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.1e-20 Score=146.40 Aligned_cols=228 Identities=16% Similarity=0.239 Sum_probs=164.1
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
..+|.+|+|+.+.+.||.+-.||.|.+|++..+- +...+.++.. ..|.+++|.+ + ..|++.+.+|.|..||+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d-rsIE~L~W~e--~-~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED-RSIESLAWAE--G-GRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCC-CceeeEEEcc--C-CeEEeecCCceEEEEecccC
Confidence 4789999999999999999999999999998753 4445555544 7799999996 5 88999999999999999998
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceec-CCCCceEEEeccCceeeeccCCCC-C----eEecCCCCeEEEEecCC
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDS-K----DDVPAEGPKYMAVAGEQ 170 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~s~~~~~~~~~~~~~ 170 (270)
+... .........-.++........... ..+....++...++.........+ . ++|+|++..++ +|+.
T Consensus 101 k~~~----~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~--~Gs~ 174 (691)
T KOG2048|consen 101 KQKY----NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA--GGSI 174 (691)
T ss_pred ceeE----EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE--eccc
Confidence 6533 444444444334443333333332 233333344455544443333333 2 88999997665 6889
Q ss_pred CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
||.|++||..++..++....+. .+-.......+|++. |-. ++ .|++|.+-|+|.+||... +..++.+..
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~----d~l~k~~~~iVWSv~-~Lr---d~--tI~sgDS~G~V~FWd~~~-gTLiqS~~~ 243 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQL----DRLSKREPTIVWSVL-FLR---DS--TIASGDSAGTVTFWDSIF-GTLIQSHSC 243 (691)
T ss_pred CceEEEEEcCCCceEEEeeecc----cccccCCceEEEEEE-Eee---cC--cEEEecCCceEEEEcccC-cchhhhhhh
Confidence 9999999999998776333210 022222456889998 664 33 799999999999999998 899999999
Q ss_pred cCCCeeEEEeecCCCc
Q 024245 251 HLEPGLECSMWRNPIT 266 (270)
Q Consensus 251 ~~~~v~~~~~s~~g~~ 266 (270)
|...|.+++.++++.+
T Consensus 244 h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 244 HDADVLALAVADNEDR 259 (691)
T ss_pred hhcceeEEEEcCCCCe
Confidence 9999999999998544
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.1e-20 Score=136.07 Aligned_cols=211 Identities=16% Similarity=0.220 Sum_probs=143.4
Q ss_pred ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
.+|.+-|.++.|.+.|+.+|+|+.|++|+|||.++. .+....+.|. +.|..+.|.+..-|+.+++++.|+++.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~--~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD--GSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC--CcEEEEEecCccccceEEEEecCCceee
Confidence 479999999999999999999999999999997543 5667778888 6699999987656899999999999999
Q ss_pred EEccCCccCCCCccceecccceE-EEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHF-CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 169 (270)
|.=.... .+.+...- ....+.. +...+.| +.|.|....+.+++++
T Consensus 88 WEE~~~~--------~~~~~~~Wv~~ttl~D----------srssV~D----------------V~FaP~hlGLklA~~~ 133 (361)
T KOG2445|consen 88 WEEQEKS--------EEAHGRRWVRRTTLVD----------SRSSVTD----------------VKFAPKHLGLKLAAAS 133 (361)
T ss_pred eeecccc--------cccccceeEEEEEeec----------CCcceeE----------------EEecchhcceEEEEec
Confidence 9753211 11111110 0000000 0000000 6688877667777888
Q ss_pred CCceEEEEeCCCcceeeeeccCcCC-CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC-----CcEEEEEcCCCC-
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCG-GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-----GSILVWDIRNPG- 242 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d-----g~i~vwd~~~~~- 242 (270)
.||.+|||+...-..+........- .+..........+.++. |+|..-..+ +||.|+.+ +.++||.....+
T Consensus 134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs-Wn~sr~~~p-~iAvgs~e~a~~~~~~~Iye~~e~~r 211 (361)
T KOG2445|consen 134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS-WNPSRMHEP-LIAVGSDEDAPHLNKVKIYEYNENGR 211 (361)
T ss_pred cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe-eccccccCc-eEEEEcccCCccccceEEEEecCCcc
Confidence 8999999998654433333221000 00011112345677787 998754445 88888766 589999877644
Q ss_pred --cceeeeeccCCCeeEEEeecC
Q 024245 243 --IPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 243 --~~~~~~~~~~~~v~~~~~s~~ 263 (270)
..+.++.+|..+|++|+|.|+
T Consensus 212 Kw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 212 KWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred eeeeehhcCCCCCcceeeeeccc
Confidence 356677899999999999996
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=153.59 Aligned_cols=196 Identities=16% Similarity=0.207 Sum_probs=150.5
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
.+.-.+-++++++|+.+|+++|.||.|-.|++-++........+.+|. ++|.++.|+| ++++|++.+-||.|++||
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~--apVl~l~~~p--~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD--APVLQLSYDP--KGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC--CceeeeeEcC--CCCEEEEEecCceEEEEE
Confidence 344466789999999999999999999999999999999999999999 7799999999 999999999999999999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~ 172 (270)
+.++.+.. ++........... . .+ -..++|+|+|..+++. + .|+
T Consensus 167 ~~~~~~~~----tl~~v~k~n~~~~--s----------------------~i------~~~~aW~Pk~g~la~~-~-~d~ 210 (933)
T KOG1274|consen 167 LQDGILSK----TLTGVDKDNEFIL--S----------------------RI------CTRLAWHPKGGTLAVP-P-VDN 210 (933)
T ss_pred cccchhhh----hcccCCccccccc--c----------------------ce------eeeeeecCCCCeEEee-c-cCC
Confidence 99886644 2222111110000 0 00 0006799998777764 3 379
Q ss_pred eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (270)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 252 (270)
.|++|+....+....+..+ + .......++ |+|. |. |||+++.||.|.|||+++ ... ....
T Consensus 211 ~Vkvy~r~~we~~f~Lr~~-------~---~ss~~~~~~-wsPn---G~-YiAAs~~~g~I~vWnv~t-~~~----~~~~ 270 (933)
T KOG1274|consen 211 TVKVYSRKGWELQFKLRDK-------L---SSSKFSDLQ-WSPN---GK-YIAASTLDGQILVWNVDT-HER----HEFK 270 (933)
T ss_pred eEEEEccCCceeheeeccc-------c---cccceEEEE-EcCC---Cc-EEeeeccCCcEEEEeccc-chh----cccc
Confidence 9999999999988888752 2 222356666 9994 66 999999999999999997 222 2234
Q ss_pred CCeeEEEeecCCCcee
Q 024245 253 EPGLECSMWRNPITMS 268 (270)
Q Consensus 253 ~~v~~~~~s~~g~~ls 268 (270)
..|.+++|-|++..|+
T Consensus 271 ~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 271 RAVCCEAWKPNANAIT 286 (933)
T ss_pred ceeEEEecCCCCCeeE
Confidence 6899999999987765
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=4.1e-21 Score=146.87 Aligned_cols=223 Identities=17% Similarity=0.199 Sum_probs=169.5
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC---CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
.|.+-|.++..|...+++++|+. |.|+|||+.. ..++..+........|.++...| ||+.|++|++-.++.|||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEASTLSIWD 493 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccceeeeee
Confidence 48888999999999999999986 6799999964 24555555544447799999999 999999999999999999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccc---eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN---AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~ 165 (270)
+...... ...+-......+..++.+++.. .....+.+.+||+.+...++ .+.||.. +.+++||..+.
T Consensus 494 LAapTpr----ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr-qfqGhtDGascIdis~dGtklW- 567 (705)
T KOG0639|consen 494 LAAPTPR----IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISKDGTKLW- 567 (705)
T ss_pred ccCCCcc----hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee-cccCCCCCceeEEecCCCceee-
Confidence 9865321 1111112222233344444332 34456778899998876655 7888877 89999998887
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
+|+-|++||-||+++++.+.+.. ....++++. +.|.+ . +|+.|-+++.+.|-.... ...
T Consensus 568 -TGGlDntvRcWDlregrqlqqhd-------------F~SQIfSLg-~cP~~---d-WlavGMens~vevlh~sk--p~k 626 (705)
T KOG0639|consen 568 -TGGLDNTVRCWDLREGRQLQQHD-------------FSSQIFSLG-YCPTG---D-WLAVGMENSNVEVLHTSK--PEK 626 (705)
T ss_pred -cCCCccceeehhhhhhhhhhhhh-------------hhhhheecc-cCCCc---c-ceeeecccCcEEEEecCC--ccc
Confidence 78899999999999998776655 456788888 99964 4 999999999988877664 445
Q ss_pred eeeeccCCCeeEEEeecCCCcee
Q 024245 246 TAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 246 ~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
..+..|.+.|.++.|.+-|+++.
T Consensus 627 yqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeecccccEEEEEEecccCceee
Confidence 66677899999999999998753
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=1.1e-20 Score=149.25 Aligned_cols=219 Identities=14% Similarity=0.207 Sum_probs=172.1
Q ss_pred cccccccccEEE-EEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 12 AVLRGHRASVTD-VCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 12 ~~~~~h~~~v~~-~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
..+.+|.+-|.. ++|-+ ++-.+++|+.|.+|.+|......+...+.+|. ..|.+++... ++. ++|||.|.+++
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~--snVC~ls~~~--~~~-~iSgSWD~Tak 125 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK--SNVCSLSIGE--DGT-LISGSWDSTAK 125 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc--cceeeeecCC--cCc-eEecccccceE
Confidence 457778888877 88886 55579999999999999999999999999999 5599999877 645 99999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~ 165 (270)
+|....-. ..+.+|............. ...+++.+..+.+..+.....++.+|.. +++-+++. ++
T Consensus 126 vW~~~~l~------~~l~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~--fl 194 (745)
T KOG0301|consen 126 VWRIGELV------YSLQGHTASVWAVASLPEN---TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH--FL 194 (745)
T ss_pred Eecchhhh------cccCCcchheeeeeecCCC---cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCC--eE
Confidence 99876432 2455666555433333332 5566777777778788888889999998 78888875 33
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
+++.||.|++|++ +++++.++. ||. ..++++. ..++ ++ .++++++|+++++|+.. ++.
T Consensus 195 -ScsNDg~Ir~w~~-~ge~l~~~~--------ght----n~vYsis-~~~~---~~-~Ivs~gEDrtlriW~~~---e~~ 252 (745)
T KOG0301|consen 195 -SCSNDGSIRLWDL-DGEVLLEMH--------GHT----NFVYSIS-MALS---DG-LIVSTGEDRTLRIWKKD---ECV 252 (745)
T ss_pred -eecCCceEEEEec-cCceeeeee--------ccc----eEEEEEE-ecCC---CC-eEEEecCCceEEEeecC---ceE
Confidence 5677999999999 699999988 784 4777776 5543 23 89999999999999976 677
Q ss_pred eeeeccCCCeeEEEeecCCCcee
Q 024245 246 TAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 246 ~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+.+.-....|+++.+-++|..+.
T Consensus 253 q~I~lPttsiWsa~~L~NgDIvv 275 (745)
T KOG0301|consen 253 QVITLPTTSIWSAKVLLNGDIVV 275 (745)
T ss_pred EEEecCccceEEEEEeeCCCEEE
Confidence 77776667899999998887654
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=8.6e-21 Score=149.93 Aligned_cols=224 Identities=17% Similarity=0.240 Sum_probs=169.6
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE--EeecCCCcceEE-EEEeeCCCCCEEEEEeCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVS-VATGPSIGLNKVISQGRD 85 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~d 85 (270)
++.+.+.||...|..+++.+.. .++++|+||++++|+-..++.+.+ +.++. +-|.. +++.+. ++..+++|+.|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~--g~i~~~i~y~e~-~~~~l~~g~~D 80 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPK--GFIANSICYAES-DKGRLVVGGMD 80 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCc--ceeeccceeccc-cCcceEeeccc
Confidence 5678899999999999987654 899999999999999876665543 44444 44555 777762 55679999999
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP 161 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~ 161 (270)
++|.+|...+. .|+..+.+|....|+++...... +..++.+....+.........+.+|+. +..-|++.
T Consensus 81 ~~i~v~~~~~~----~P~~~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~ 153 (745)
T KOG0301|consen 81 TTIIVFKLSQA----EPLYTLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENT 153 (745)
T ss_pred ceEEEEecCCC----CchhhhhccccceeeeecCCcCc---eEecccccceEEecchhhhcccCCcchheeeeeecCCCc
Confidence 99999999887 56779999999999888665544 334444444344444444445889988 55556663
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
++ +|+.|.+|++|.- ++.+++|. ||.+ .+..++ +-|+ + -+++++.||.|++|++.
T Consensus 154 --~v-TgsaDKtIklWk~--~~~l~tf~--------gHtD----~VRgL~-vl~~---~--~flScsNDg~Ir~w~~~-- 208 (745)
T KOG0301|consen 154 --YV-TGSADKTIKLWKG--GTLLKTFS--------GHTD----CVRGLA-VLDD---S--HFLSCSNDGSIRLWDLD-- 208 (745)
T ss_pred --EE-eccCcceeeeccC--Cchhhhhc--------cchh----heeeeE-EecC---C--CeEeecCCceEEEEecc--
Confidence 33 7888999999986 78888999 8855 566665 7663 2 69999999999999994
Q ss_pred CcceeeeeccCCCeeEEEe-ecCCCcee
Q 024245 242 GIPLTAMKVHLEPGLECSM-WRNPITMS 268 (270)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~-s~~g~~ls 268 (270)
++++..+.+|+.-|.+++. .+++..+|
T Consensus 209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 209 GEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred CceeeeeeccceEEEEEEecCCCCeEEE
Confidence 8999999999999999994 44555554
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.9e-21 Score=144.50 Aligned_cols=204 Identities=16% Similarity=0.185 Sum_probs=147.8
Q ss_pred ccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 15 RGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
.+|+++|.+|+|+.. ...|||||.|.+|++||+.++++..++..|. ..|.+++|+|. ....|++|+.|++|.+.|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~--k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG--KKVQTLEWHPY-EPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC--CceeEEEecCC-CceEEEeccccceEEeeec
Confidence 479999999999984 4589999999999999999999999999888 55999999996 5589999999999999999
Q ss_pred cCCccCCCCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEe
Q 024245 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA 167 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~ 167 (270)
+...... ..++. ......+.+.... ........+....+|++......+.+..|.. +++++.-+.+++ +
T Consensus 317 R~~~~s~---~~wk~-~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~-t 391 (463)
T KOG0270|consen 317 RDPSNSG---KEWKF-DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLS-T 391 (463)
T ss_pred cCccccC---ceEEe-ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCccee-e
Confidence 8532211 11111 1112222222222 2233444567777899988888888888888 889988888886 5
Q ss_pred cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
++.|+.|++|++.......... |.- ..+...|.+ +.|+ -...++.|+..+.++|||+.+
T Consensus 392 ~s~d~~Vklw~~~~~~~~~v~~---------~~~-~~~rl~c~~-~~~~---~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKSVKE---------HSF-KLGRLHCFA-LDPD---VAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ccccceEEEEeecCCCCccccc---------ccc-cccceeecc-cCCC---cceEEEecCccceEEEeeccc
Confidence 7779999999987555432222 211 122233333 6664 223899999999999999988
No 125
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=1.5e-20 Score=144.03 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=154.0
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE------------EeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS------------SWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
...|++++|++.|..|++.+.....+|+|-...+.... -++|. ..+++.+|+|. +.+.++|++.|
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi--a~lt~g~whP~-~k~~FlT~s~D 290 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI--AELTCGCWHPD-NKEEFLTCSYD 290 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCce--eeeeccccccC-cccceEEecCC
Confidence 34799999999999888777778899999764333332 24666 66999999996 34789999999
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCcccee---cCCCCceEEEeccCc--eeeeccCCCCC------e
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK---QANEPKDCYEREVGE--TVDTDSLCDSK------D 154 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~------~ 154 (270)
|++++||++..+.....+.........+...++.+++....+ ...+.+.+|+..... .......+|.. +
T Consensus 291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI 370 (641)
T ss_pred CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE
Confidence 999999998765433222222222333333344444444433 345667778764322 22233344444 9
Q ss_pred EecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-----
Q 024245 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY----- 228 (270)
Q Consensus 155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~----- 228 (270)
.||++|++|+ +-+.|+++++||++..+ ++.... +-.... .-+.++ |+|+. + +|++|.
T Consensus 371 ~FS~dg~~Ll--SRg~D~tLKvWDLrq~kkpL~~~t--------gL~t~~--~~tdc~-FSPd~---k-li~TGtS~~~~ 433 (641)
T KOG0772|consen 371 SFSYDGNYLL--SRGFDDTLKVWDLRQFKKPLNVRT--------GLPTPF--PGTDCC-FSPDD---K-LILTGTSAPNG 433 (641)
T ss_pred Eeccccchhh--hccCCCceeeeeccccccchhhhc--------CCCccC--CCCccc-cCCCc---e-EEEecccccCC
Confidence 9999998776 67789999999999654 555544 222211 223344 99963 3 888885
Q ss_pred -CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245 229 -EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 229 -~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
..|++++||..+ -..++.+......|..+.|+|.=..
T Consensus 434 ~~~g~L~f~d~~t-~d~v~ki~i~~aSvv~~~WhpkLNQ 471 (641)
T KOG0772|consen 434 MTAGTLFFFDRMT-LDTVYKIDISTASVVRCLWHPKLNQ 471 (641)
T ss_pred CCCceEEEEeccc-eeeEEEecCCCceEEEEeecchhhh
Confidence 357899999998 7788888777888999999995443
No 126
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6e-21 Score=149.84 Aligned_cols=175 Identities=19% Similarity=0.269 Sum_probs=139.6
Q ss_pred CcccccccccccEEEEEE-eCCCCEEEEecCCCcEEEEeCCCC--ceeEEE--------e-ecCCCcceEEEEEeeCCCC
Q 024245 9 DPVAVLRGHRASVTDVCF-HQTKPILFAGTTGGELRIWDTVQH--RTVSSS--------W-VHSAAHGIVSVATGPSIGL 76 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~--------~-~~~~~~~v~~~~~~~~~~~ 76 (270)
-+..+++.|++.|.|+++ -++..++|+|+-|+.|.+||++++ +.+..+ . ++. ++|++++.++ .|
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k--~siYSLA~N~--t~ 183 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK--DSIYSLAMNQ--TG 183 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc--cceeeeecCC--cc
Confidence 367889999999999999 778889999999999999999977 233222 2 344 7799999999 88
Q ss_pred CEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEe
Q 024245 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV 156 (270)
Q Consensus 77 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (270)
..|++|+..+.+++||.++.+... .+.++...... +..
T Consensus 184 t~ivsGgtek~lr~wDprt~~kim----kLrGHTdNVr~--------------------------------------ll~ 221 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKIM----KLRGHTDNVRV--------------------------------------LLV 221 (735)
T ss_pred eEEEecCcccceEEecccccccee----eeeccccceEE--------------------------------------EEE
Confidence 899999999999999999986543 45555555442 336
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
++||.+++ +++.||+|++||++..+++.++. .|. ..+|++. .+|+-. .+.+|+.||.|..=
T Consensus 222 ~dDGt~~l--s~sSDgtIrlWdLgqQrCl~T~~--------vH~----e~VWaL~-~~~sf~----~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 222 NDDGTRLL--SASSDGTIRLWDLGQQRCLATYI--------VHK----EGVWALQ-SSPSFT----HVYSGGRDGNIYRT 282 (735)
T ss_pred cCCCCeEe--ecCCCceEEeeeccccceeeeEE--------ecc----CceEEEe-eCCCcc----eEEecCCCCcEEec
Confidence 78898776 67779999999999999999998 673 3488887 777533 89999999999999
Q ss_pred EcCCCCcceeee
Q 024245 237 DIRNPGIPLTAM 248 (270)
Q Consensus 237 d~~~~~~~~~~~ 248 (270)
|++++.+....+
T Consensus 283 dl~n~~~~tlic 294 (735)
T KOG0308|consen 283 DLRNPAKSTLIC 294 (735)
T ss_pred ccCCchhheEee
Confidence 999854443333
No 127
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=5.8e-20 Score=138.80 Aligned_cols=228 Identities=17% Similarity=0.232 Sum_probs=164.5
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE-E-----------------eecCCCcceEEEEEee
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-S-----------------WVHSAAHGIVSVATGP 72 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~-----------------~~~~~~~~v~~~~~~~ 72 (270)
.+.+..|.-+|.+++++|++++.++++.|++|.-|++.+++.... + ..|. ..+.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~--keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV--KEILTLAVSS 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc--ceeEEEEEcC
Confidence 567788999999999999999999999999999999988763310 0 1344 5599999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCceeeeccCCC
Q 024245 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCD 151 (270)
Q Consensus 73 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (270)
|+.+|++|+.|..|.||+.++.+.+. .+.++...+..+.+...+...+ ......+.+|++.....+. ++.+|
T Consensus 213 --Dgkylatgg~d~~v~Iw~~~t~ehv~----~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve-tlyGH 285 (479)
T KOG0299|consen 213 --DGKYLATGGRDRHVQIWDCDTLEHVK----VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE-TLYGH 285 (479)
T ss_pred --CCcEEEecCCCceEEEecCcccchhh----cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH-HHhCC
Confidence 99999999999999999999986544 6677776666555554443333 3334456677776654443 56677
Q ss_pred CC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245 152 SK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229 (270)
Q Consensus 152 ~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~ 229 (270)
+. +.++.-+..-+++.|..|+++++|++.....+ .+. +| .+.+-+++ |-. .. .+++|+.
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifr--------g~----~~sidcv~-~In----~~-HfvsGSd 346 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFR--------GG----EGSIDCVA-FIN----DE-HFVSGSD 346 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEecccccee-eee--------CC----CCCeeeEE-Eec----cc-ceeeccC
Confidence 76 55555444446677889999999999643332 344 34 33455555 653 22 7999999
Q ss_pred CCcEEEEEcCCCCcceeeee-ccC-----------CCeeEEEeecCCCce
Q 024245 230 DGSILVWDIRNPGIPLTAMK-VHL-----------EPGLECSMWRNPITM 267 (270)
Q Consensus 230 dg~i~vwd~~~~~~~~~~~~-~~~-----------~~v~~~~~s~~g~~l 267 (270)
||.|.+|++.. .+|+.+.. .|. .+|++++..|...++
T Consensus 347 nG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~ 395 (479)
T KOG0299|consen 347 NGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLL 395 (479)
T ss_pred CceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCceE
Confidence 99999999998 77776654 221 278888888866554
No 128
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=8.6e-21 Score=139.42 Aligned_cols=212 Identities=11% Similarity=0.110 Sum_probs=149.9
Q ss_pred CCCCCCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
|++-|.. ...+.+.||..++++-.|.|+|+.++++..||+|++||+++++++..+....+ ....++.++. .+..++
T Consensus 174 mw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~--~~~~~~ 249 (399)
T KOG0296|consen 174 MWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNL--AGSTLT 249 (399)
T ss_pred EEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc-CcCCcccccc--ccceeE
Confidence 5555554 67889999999999999999999999999999999999999999988875543 5578888888 888999
Q ss_pred EEeCCCcEEEEEccCCccCCCCc-----cceecccceEEEE-eeccCCccceec---CCCCceEEEeccCceeeeccCCC
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPS-----LTIKTNSYHFCKL-SLVKEPYANAKQ---ANEPKDCYEREVGETVDTDSLCD 151 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 151 (270)
+|+.++.+++-+..+++.+.-.. ... .......++ +..........+ ..+...+||+..... + ....|
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~-~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-R-~~c~h 326 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKP-SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-R-HICEH 326 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccc-cchhhhhhhhhcccccccchhhcccccceEEEEecccchh-h-eeccC
Confidence 99999999998888876543000 000 011111111 111222222223 344455666654322 1 22223
Q ss_pred CC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245 152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 152 ~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
+. +.|-+ ..++++ ++.+|.|+.||.|+|+++.++. ||.. .+.+++ ++|+ ++ +++|+
T Consensus 327 e~~V~~l~w~~-t~~l~t--~c~~g~v~~wDaRtG~l~~~y~--------GH~~----~Il~f~-ls~~---~~-~vvT~ 386 (399)
T KOG0296|consen 327 EDGVTKLKWLN-TDYLLT--ACANGKVRQWDARTGQLKFTYT--------GHQM----GILDFA-LSPQ---KR-LVVTV 386 (399)
T ss_pred CCceEEEEEcC-cchhee--eccCceEEeeeccccceEEEEe--------cCch----heeEEE-EcCC---Cc-EEEEe
Confidence 33 67777 455653 4558999999999999999999 8854 567776 8884 44 99999
Q ss_pred cCCCcEEEEEcC
Q 024245 228 YEDGSILVWDIR 239 (270)
Q Consensus 228 ~~dg~i~vwd~~ 239 (270)
|.|++.+||++.
T Consensus 387 s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 387 SDDNTALVFEVP 398 (399)
T ss_pred cCCCeEEEEecC
Confidence 999999999875
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=3.8e-21 Score=141.26 Aligned_cols=226 Identities=12% Similarity=0.184 Sum_probs=165.9
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
++..+++.|.+.|..+++.. ..+++++.|.+|+.|.++. .+.+++.+. ..+..+.-+. .++.++|++++ |
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~---s~~~gIdh~~--~~~~FaTcGe~--i 169 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK---SVYLGIDHHR--KNSVFATCGEQ--I 169 (433)
T ss_pred hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc---cccccccccc--ccccccccCce--e
Confidence 57889999999999999987 6788999999999999874 577777665 4577887777 66889999875 9
Q ss_pred EEEEccCCccCCCCccceecccc--eEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYM 164 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~ 164 (270)
.|||..... |+..+.-... ..+.+.+................++|.+....+......-.. ++|+|.+-.+
T Consensus 170 ~IWD~~R~~----Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF- 244 (433)
T KOG0268|consen 170 DIWDEQRDN----PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNF- 244 (433)
T ss_pred eecccccCC----ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccce-
Confidence 999997663 3334444333 444444444444444455666778899988877765544444 9999965433
Q ss_pred EEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 165 AVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
+++++|..++.||++..+ ++..+. +| ...++++. |+|. |+ -+++||.|.+|+||.++. +.
T Consensus 245 -~~a~ED~nlY~~DmR~l~~p~~v~~--------dh----vsAV~dVd-fspt---G~-EfvsgsyDksIRIf~~~~-~~ 305 (433)
T KOG0268|consen 245 -VAANEDHNLYTYDMRNLSRPLNVHK--------DH----VSAVMDVD-FSPT---GQ-EFVSGSYDKSIRIFPVNH-GH 305 (433)
T ss_pred -eeccccccceehhhhhhcccchhhc--------cc----ceeEEEec-cCCC---cc-hhccccccceEEEeecCC-Cc
Confidence 368899999999998654 555555 56 45789998 9996 44 899999999999999987 33
Q ss_pred ceeee-eccCCCeeEEEeecCCCcee
Q 024245 244 PLTAM-KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 244 ~~~~~-~~~~~~v~~~~~s~~g~~ls 268 (270)
.-..+ .-.-..|.++.||-|.+||-
T Consensus 306 SRdiYhtkRMq~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 306 SRDIYHTKRMQHVFCVKYSMDSKYII 331 (433)
T ss_pred chhhhhHhhhheeeEEEEeccccEEE
Confidence 22222 11235799999999999864
No 130
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=6.8e-20 Score=143.73 Aligned_cols=233 Identities=17% Similarity=0.265 Sum_probs=159.6
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE--EeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+..+..|..+|..+.|.|....|++++.|.++++||++..+++.. +.+|. ..|.+++|.|. +...|++|+.||.|
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~--~SvkS~cf~~~-n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT--GSVKSECFMPT-NPAVFCTGGRDGEI 169 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc--cccchhhhccC-CCcceeeccCCCcE
Confidence 345567999999999999667899999999999999999888876 88888 66999999996 45789999999999
Q ss_pred EEEEccCCccCC----------------CCcccee---------cccceE---EEEeeccCCccceecCCCCceEEEecc
Q 024245 89 KCWDIENGGLSS----------------NPSLTIK---------TNSYHF---CKLSLVKEPYANAKQANEPKDCYEREV 140 (270)
Q Consensus 89 ~~wd~~~~~~~~----------------~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (270)
.|||++-..... .|..... ...... ..+..+........+..+.+.+||++.
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 999996443110 0111100 001111 111112222222333456678899987
Q ss_pred Cceeee-------ccCCCCC-------eEecCCCCeEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCC
Q 024245 141 GETVDT-------DSLCDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGR 204 (270)
Q Consensus 141 ~~~~~~-------~~~~~~~-------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~ 204 (270)
...... .+..+.. +.....|.+++| ++. |++|+.|++++.. ++..+. ++.. .
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A-sCt-D~sIy~ynm~s~s~sP~~~~s--------g~~~--~ 317 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA-SCT-DNSIYFYNMRSLSISPVAEFS--------GKLN--S 317 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE-Eec-CCcEEEEeccccCcCchhhcc--------Cccc--c
Confidence 654322 1112211 455566788887 444 8999999998644 344444 3321 1
Q ss_pred ceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecC
Q 024245 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 205 ~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 263 (270)
..-..- +.+|+ +. +|++|+.|...++|.+.++..+...+.+|...|++++|.|.
T Consensus 318 sf~vks-~lSpd---~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 318 SFYVKS-ELSPD---DC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred eeeeee-ecCCC---Cc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 111112 36774 44 99999999999999999988999999999999999999884
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.2e-21 Score=155.43 Aligned_cols=191 Identities=18% Similarity=0.315 Sum_probs=159.6
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
+.+..|...|.++..-..++.+++|+.|..+-+|.+..-..+..+.+|. .+|.++.|++ +..+|++|+.+|+|++|
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he--spIeSl~f~~--~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE--SPIESLTFDT--SERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC--CcceeeecCc--chhhhcccccCCceeee
Confidence 4566789999999987788999999999999999998877777888998 7799999999 87889999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d 171 (270)
|++.++.++ ++.++...... +.|+|-+.+. ++|+.|
T Consensus 98 DleeAk~vr----tLtgh~~~~~s--------------------------------------v~f~P~~~~~--a~gStd 133 (825)
T KOG0267|consen 98 DLEEAKIVR----TLTGHLLNITS--------------------------------------VDFHPYGEFF--ASGSTD 133 (825)
T ss_pred ehhhhhhhh----hhhccccCcce--------------------------------------eeeccceEEe--cccccc
Confidence 999887654 33333333221 4588888755 489999
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 251 (270)
..+++||.+...+.+.+. +|. ..+..+. |+| +|+ +++.|++|..++|||+.. ++.+..|+.|
T Consensus 134 td~~iwD~Rk~Gc~~~~~--------s~~----~vv~~l~-lsP---~Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~ 195 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYK--------SHT----RVVDVLR-LSP---DGR-WVASGGEDNTVKIWDLTA-GKLSKEFKSH 195 (825)
T ss_pred ccceehhhhccCceeeec--------CCc----ceeEEEe-ecC---CCc-eeeccCCcceeeeecccc-cccccccccc
Confidence 999999999989999998 663 3455555 999 566 999999999999999998 9999999999
Q ss_pred CCCeeEEEeecCCCcee
Q 024245 252 LEPGLECSMWRNPITMS 268 (270)
Q Consensus 252 ~~~v~~~~~s~~g~~ls 268 (270)
...+..+.|+|...+++
T Consensus 196 e~~v~sle~hp~e~Lla 212 (825)
T KOG0267|consen 196 EGKVQSLEFHPLEVLLA 212 (825)
T ss_pred cccccccccCchhhhhc
Confidence 99999999999877665
No 132
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.1e-19 Score=135.16 Aligned_cols=172 Identities=19% Similarity=0.324 Sum_probs=129.6
Q ss_pred cccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCCCCEEEE
Q 024245 10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (270)
-+-.+.||+++|..++|+| +...|||||+|.+|.||++..+ +++..+.+|. ..|--++|+|.. .+.|++
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--rrVg~V~wHPtA-~NVLls 149 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--RRVGLVQWHPTA-PNVLLS 149 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc--eeEEEEeecccc-hhhHhh
Confidence 3446789999999999999 7779999999999999999764 4677888998 569999999963 488999
Q ss_pred EeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCC
Q 024245 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (270)
Q Consensus 82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 161 (270)
++.|.+|.+||+.+++..- .+. ++..+. + ++|+.+|.
T Consensus 150 ag~Dn~v~iWnv~tgeali----~l~-hpd~i~--S------------------------------------~sfn~dGs 186 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALI----TLD-HPDMVY--S------------------------------------MSFNRDGS 186 (472)
T ss_pred ccCCceEEEEeccCCceee----ecC-CCCeEE--E------------------------------------EEeccCCc
Confidence 9999999999999996432 333 322221 1 45888997
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec---CCCcEEEEEc
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDI 238 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~---~dg~i~vwd~ 238 (270)
.+. +.+.|..|+|||.++++.+..-. +|.+.....+. |-. +|. ++.||- ++..+-+||-
T Consensus 187 ~l~--TtckDKkvRv~dpr~~~~v~e~~--------~heG~k~~Rai----fl~---~g~-i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 187 LLC--TTCKDKKVRVIDPRRGTVVSEGV--------AHEGAKPARAI----FLA---SGK-IFTTGFSRMSERQIALWDP 248 (472)
T ss_pred eee--eecccceeEEEcCCCCcEeeecc--------cccCCCcceeE----Eec---cCc-eeeeccccccccceeccCc
Confidence 554 56689999999999999988876 67554333332 554 454 555553 5778999997
Q ss_pred CCCCcce
Q 024245 239 RNPGIPL 245 (270)
Q Consensus 239 ~~~~~~~ 245 (270)
.+..+++
T Consensus 249 ~nl~eP~ 255 (472)
T KOG0303|consen 249 NNLEEPI 255 (472)
T ss_pred ccccCcc
Confidence 7655543
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=8.5e-19 Score=142.81 Aligned_cols=228 Identities=13% Similarity=0.129 Sum_probs=155.9
Q ss_pred ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
.+|+..-+.++|.|+|++|++++.||.|++|+..+. +....+..+. ..|.+++... ++|++++.+++|.+|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~s----~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACYS----NHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeecc----cceEEeeccceEEEeeC
Confidence 468889999999999999999999999999998765 4444444344 5577777644 79999999999999999
Q ss_pred cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE---EEeccCceeeeccCCCCC----eEecCCCCeEEEE
Q 024245 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC---YEREVGETVDTDSLCDSK----DDVPAEGPKYMAV 166 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~ 166 (270)
.+++... ++..-..+...+ .+. ..+..++.++.+.. .+..+. .....+.+|.. +.|+|.+..+.+
T Consensus 84 ps~~~~~--iL~Rftlp~r~~--~v~--g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fLAv- 155 (933)
T KOG1274|consen 84 PSGEEDT--ILARFTLPIRDL--AVS--GSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFLAV- 155 (933)
T ss_pred CCCCccc--eeeeeeccceEE--EEe--cCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEEEE-
Confidence 8876432 222222222222 222 22233333443333 333333 33446667766 889999974443
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCC-CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG-RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~-~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
.+-||.|++||+.++.+..++..-. .-.... ...+..++ |+|+ |. .|+....|+.|++|+... ..+.
T Consensus 156 -ss~dG~v~iw~~~~~~~~~tl~~v~-----k~n~~~~s~i~~~~a-W~Pk---~g-~la~~~~d~~Vkvy~r~~-we~~ 223 (933)
T KOG1274|consen 156 -SSCDGKVQIWDLQDGILSKTLTGVD-----KDNEFILSRICTRLA-WHPK---GG-TLAVPPVDNTVKVYSRKG-WELQ 223 (933)
T ss_pred -EecCceEEEEEcccchhhhhcccCC-----ccccccccceeeeee-ecCC---CC-eEEeeccCCeEEEEccCC-ceeh
Confidence 3448999999999998887776210 111112 44566777 9996 33 688888899999999887 7766
Q ss_pred eeeec--cCCCeeEEEeecCCCcee
Q 024245 246 TAMKV--HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 246 ~~~~~--~~~~v~~~~~s~~g~~ls 268 (270)
..+.. +...+..++|+|+|+||.
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEe
Confidence 66653 445599999999999986
No 134
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.6e-20 Score=153.27 Aligned_cols=226 Identities=13% Similarity=0.187 Sum_probs=160.4
Q ss_pred cccEEEEEEeCCCCE----EEEecCCCcEEEEeCCC---C---ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 18 RASVTDVCFHQTKPI----LFAGTTGGELRIWDTVQ---H---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~----l~s~~~dg~i~vwd~~~---~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
...-+.++|.+.|.. ||.|.+||.|.+||... + ..+..+..|. +.|..+.|++. .++.|++|+.||.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~--G~V~gLDfN~~-q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT--GPVLGLDFNPF-QGNLLASGADDGE 140 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC--Cceeeeecccc-CCceeeccCCCCc
Confidence 356789999996654 99999999999999865 2 3445566777 66999999996 4479999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeecc--CCccceecCCCCceEEEeccCceeeeccCCC----CC-eEecCCC
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDTDSLCD----SK-DDVPAEG 160 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~s~~~ 160 (270)
|.|||+++-+....+- -......+..+++.. ..........+...+||++..+.+....... -. ++|+|+.
T Consensus 141 I~iWDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred EEEeccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence 9999998854322111 011112222222222 2222333344566789999886554432222 22 9999998
Q ss_pred CeEEEEecCCCc--eEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 161 PKYMAVAGEQLS--EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 161 ~~~~~~~~~~d~--~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
..-++++..+|+ .|.+||+|.- .++++++ +|. ..+.++. |++. |.+ +|++++.|+.|.+|+
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~--------~H~----~Gilsls-Wc~~--D~~-lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILE--------GHQ----RGILSLS-WCPQ--DPR-LLLSSGKDNRIICWN 282 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhc--------ccc----cceeeec-cCCC--Cch-hhhcccCCCCeeEec
Confidence 776665555444 6999999854 4677776 773 3577787 9986 445 999999999999999
Q ss_pred cCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245 238 IRNPGIPLTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 238 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 265 (270)
.++ ++.+..+....+++..+.|+|..-
T Consensus 283 ~~t-gEvl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 283 PNT-GEVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred CCC-ceEeeecCCCCcceeeeeecCCCc
Confidence 999 899999988888999999999543
No 135
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=4.1e-19 Score=127.11 Aligned_cols=231 Identities=15% Similarity=0.144 Sum_probs=162.9
Q ss_pred cccccccccEEEEEEeC-CCCEEEEecCC-------CcEEEEeCCCC---------ceeEEEe-ecCCCcceEEEEEeeC
Q 024245 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTG-------GELRIWDTVQH---------RTVSSSW-VHSAAHGIVSVATGPS 73 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d-------g~i~vwd~~~~---------~~~~~~~-~~~~~~~v~~~~~~~~ 73 (270)
..|..|.+.|+.++-+| +.++|+++-.+ -.+.||.+... +++..+. .+- +.|.|+.|.|
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav--g~i~cvew~P- 133 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV--GKINCVEWEP- 133 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh--CceeeEEEcC-
Confidence 45677889999999999 66677776442 24789998653 2333343 222 4599999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCccCCCCccce-ec-ccceE--EEEeeccCCccceecCCCCceEEEeccCceeeeccC
Q 024245 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI-KT-NSYHF--CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL 149 (270)
Q Consensus 74 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (270)
++..+++.. |..|.+|++..+......+... .. ....+ ..+++.-.........++....||+++.+.....-.
T Consensus 134 -ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 134 -NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred -CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence 888888776 7889999998775422111111 11 11122 223333333445566677788899998888877777
Q ss_pred CCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245 150 CDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (270)
Q Consensus 150 ~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (270)
+|.. +.|+|+.+++++ ++++||.|+|||.|.-+ +++++. +| ...++++. |+|. ..+ +|
T Consensus 212 AHgq~vrdlDfNpnkq~~lv-t~gDdgyvriWD~R~tk~pv~el~--------~H----sHWvW~VR-fn~~--hdq-Li 274 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILV-TCGDDGYVRIWDTRKTKFPVQELP--------GH----SHWVWAVR-FNPE--HDQ-LI 274 (370)
T ss_pred hhcceeeeccCCCCceEEEE-EcCCCccEEEEeccCCCccccccC--------CC----ceEEEEEE-ecCc--cce-EE
Confidence 8866 899999998887 56679999999998644 777777 66 44899998 9997 455 99
Q ss_pred EEecCCCcEEEEEcCCC----------------------------CcceeeeeccCCCeeEEEeecCC
Q 024245 225 LAGYEDGSILVWDIRNP----------------------------GIPLTAMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 225 ~~~~~dg~i~vwd~~~~----------------------------~~~~~~~~~~~~~v~~~~~s~~g 264 (270)
++|+.|..|.+|....- ...+.++..|.+.|++++||.-.
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence 99999999999964321 01345777899999999998643
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=6.6e-18 Score=130.37 Aligned_cols=221 Identities=11% Similarity=0.079 Sum_probs=145.6
Q ss_pred cccccccccccEEEEEEeCCCCEEEE-ecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC-c
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFA-GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-T 87 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-~ 87 (270)
.+..+..+. .+..++|+|+++.+++ ++.|+.|++||+.+.+.+..+... ..+.+++|+| ++.++++++.++ .
T Consensus 65 ~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~--dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 65 VIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG---VEPEGMAVSP--DGKIVVNTSETTNM 138 (300)
T ss_pred EEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC---CCcceEEECC--CCCEEEEEecCCCe
Confidence 344444443 3567899999987654 456899999999988877776543 3368899999 999999888765 5
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccc--eecCCCCceEEEeccCceeeec-cCC---C----C--CeE
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN--AKQANEPKDCYEREVGETVDTD-SLC---D----S--KDD 155 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~---~----~--~~~ 155 (270)
+.+||.++++.... . ....... .+.+....... .....+...+|++.+++.+... +.. + . .++
T Consensus 139 ~~~~d~~~~~~~~~--~-~~~~~~~--~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 213 (300)
T TIGR03866 139 AHFIDTKTYEIVDN--V-LVDQRPR--FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIK 213 (300)
T ss_pred EEEEeCCCCeEEEE--E-EcCCCcc--EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceE
Confidence 67789887654320 0 0111111 12222222212 1123455778888877654321 110 1 1 178
Q ss_pred ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe-cCCCcEE
Q 024245 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSIL 234 (270)
Q Consensus 156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~~dg~i~ 234 (270)
|+|+++.++++.+. ++.+.+||+++++.+..+.. + ..+.++. |+|+ |+ +|+++ +.+|.|.
T Consensus 214 ~s~dg~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~-------~------~~~~~~~-~~~~---g~-~l~~~~~~~~~i~ 274 (300)
T TIGR03866 214 LTKDGKTAFVALGP-ANRVAVVDAKTYEVLDYLLV-------G------QRVWQLA-FTPD---EK-YLLTTNGVSNDVS 274 (300)
T ss_pred ECCCCCEEEEEcCC-CCeEEEEECCCCcEEEEEEe-------C------CCcceEE-ECCC---CC-EEEEEcCCCCeEE
Confidence 99999987664443 57899999998887765541 1 2466777 9995 55 66665 5799999
Q ss_pred EEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245 235 VWDIRNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
+||+++ ++++..++.. ..+++++++|
T Consensus 275 v~d~~~-~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 275 VIDVAA-LKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEECCC-CcEEEEEEcc-cccceeEeCC
Confidence 999999 8888888854 6669999876
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2e-20 Score=155.36 Aligned_cols=211 Identities=17% Similarity=0.232 Sum_probs=160.1
Q ss_pred CcccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
..+.++..|++.|..+.|++.+ .+||+|+.||.|.|||+.+-+.-..+......+.|.+++|+.. ....|++++.+|.
T Consensus 107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGR 185 (1049)
T ss_pred HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCC
Confidence 4677888999999999999954 5999999999999999987544434422222366999999984 3467889999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccc--eecC-----CCCceEEEeccCceeeeccCCCCC----eEe
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN--AKQA-----NEPKDCYEREVGETVDTDSLCDSK----DDV 156 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (270)
+.|||++..+ ++..+........+-.+.+++... .... .-.+.+||++........+++|.. +.|
T Consensus 186 ~~iWDlr~~~----pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW 261 (1049)
T KOG0307|consen 186 AVIWDLRKKK----PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW 261 (1049)
T ss_pred ceeccccCCC----cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc
Confidence 9999999874 344555444433333444554432 2211 123566999988888888999988 788
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
++.+..++++ ++.|+.|.+|+.++++.+..+.. ....+..+. |.|..++ .+++++-||.|-|+
T Consensus 262 c~~D~~lllS-sgkD~~ii~wN~~tgEvl~~~p~------------~~nW~fdv~-w~pr~P~---~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 262 CPQDPRLLLS-SGKDNRIICWNPNTGEVLGELPA------------QGNWCFDVQ-WCPRNPS---VMAAASFDGKISIY 324 (1049)
T ss_pred CCCCchhhhc-ccCCCCeeEecCCCceEeeecCC------------CCcceeeee-ecCCCcc---hhhhheeccceeee
Confidence 8888778774 55799999999999999999983 245788898 9997542 89999999999999
Q ss_pred EcCCC
Q 024245 237 DIRNP 241 (270)
Q Consensus 237 d~~~~ 241 (270)
.+...
T Consensus 325 sl~~~ 329 (1049)
T KOG0307|consen 325 SLQGT 329 (1049)
T ss_pred eeecC
Confidence 98763
No 138
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.3e-19 Score=140.30 Aligned_cols=216 Identities=16% Similarity=0.212 Sum_probs=146.8
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----------ceeEEEeecCCCcceEEEEEeeCCCCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----------RTVSSSWVHSAAHGIVSVATGPSIGLN 77 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 77 (270)
.+++.+|++|+++|.|+++.+++..+++|+-||+|+.|++... .....+.+|. +.|+.+++++ ...
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght--davw~l~~s~--~~~ 409 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT--DAVWLLALSS--TKD 409 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccc--cceeeeeecc--ccc
Confidence 3689999999999999999999999999999999999976421 2345678898 6699999999 777
Q ss_pred EEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEe---ccCceeee----ccC
Q 024245 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYER---EVGETVDT----DSL 149 (270)
Q Consensus 78 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~----~~~ 149 (270)
.|++++.||++++|+...... .++..........+++..... ...........+.+ .....+.. ...
T Consensus 410 ~Llscs~DgTvr~w~~~~~~~-----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~ 484 (577)
T KOG0642|consen 410 RLLSCSSDGTVRLWEPTEESP-----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASP 484 (577)
T ss_pred ceeeecCCceEEeeccCCcCc-----cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCC
Confidence 899999999999999876543 111111111111222221111 11111112222222 22211111 001
Q ss_pred -----CCCC-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245 150 -----CDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (270)
Q Consensus 150 -----~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~ 223 (270)
.+.+ +...|.....+ ++..|+.|+++|..++.++.... .| ...+.+++ +.|+ |. +
T Consensus 485 ~~~~~~~in~vVs~~~~~~~~--~~hed~~Ir~~dn~~~~~l~s~~--------a~----~~svtsla-i~~n---g~-~ 545 (577)
T KOG0642|consen 485 GPRRYPQINKVVSHPTADITF--TAHEDRSIRFFDNKTGKILHSMV--------AH----KDSVTSLA-IDPN---GP-Y 545 (577)
T ss_pred cccccCccceEEecCCCCeeE--ecccCCceecccccccccchhee--------ec----cceeccee-ecCC---Cc-e
Confidence 1111 67778886444 67789999999999999988877 56 34677777 9985 44 9
Q ss_pred EEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (270)
Q Consensus 224 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 252 (270)
|++|+.|+.+++|.+.. ..++.....|.
T Consensus 546 l~s~s~d~sv~l~kld~-k~~~~es~~~r 573 (577)
T KOG0642|consen 546 LMSGSHDGSVRLWKLDV-KTCVLESTAHR 573 (577)
T ss_pred EEeecCCceeehhhccc-hheeecccccc
Confidence 99999999999999987 66666666554
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=4.5e-20 Score=134.04 Aligned_cols=228 Identities=17% Similarity=0.196 Sum_probs=140.3
Q ss_pred CCcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEe---ecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
.++...+.||..+|+.+.|+|+ .++++++|.|..|++|++++..++..+- +|. +.|.++.|++ +|.+|++++
T Consensus 125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr--deVLSvD~~~--~gd~i~ScG 200 (385)
T KOG1034|consen 125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR--DEVLSVDFSL--DGDRIASCG 200 (385)
T ss_pred hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc--CcEEEEEEcC--CCCeeeccC
Confidence 3567789999999999999994 5699999999999999999999998875 566 6699999999 999999999
Q ss_pred CCCcEEEEEccCCccCCCC--ccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeee---ccCCCCC--eEe
Q 024245 84 RDGTVKCWDIENGGLSSNP--SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DSLCDSK--DDV 156 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~ 156 (270)
.|.+|++|++...+..... .......... .. +.+...... ...-|.. -+.
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~-~p----------------------fpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTT-RP----------------------FPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCcc-Cc----------------------CCccccccccccccccccchHHHH
Confidence 9999999999865432100 0000000000 00 000000000 1111222 112
Q ss_pred cCCCCeEEEEecCCCceEEEEeCC-CcceeeeeccC-cCCCCCCcccCCCceeeeee-ecCCCCCCCceEEEEecCCCcE
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQN-SCGGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~-~~~p~~~~g~~~l~~~~~dg~i 233 (270)
..-|++++ +-+-++.|..|... -.+.+...+.+ ......++-.-....++-+. +|.|- ++ .||.|...|.|
T Consensus 258 rw~gd~il--SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~---~~-~la~gnq~g~v 331 (385)
T KOG1034|consen 258 RWFGDFIL--SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW---QK-MLALGNQSGKV 331 (385)
T ss_pred HHHhhhee--ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH---HH-HHhhccCCCcE
Confidence 22344444 44446899999873 22333333211 11122223222233344333 15553 33 89999999999
Q ss_pred EEEEcCCCCcce-eeee--ccCCCeeEEEeecCCCcee
Q 024245 234 LVWDIRNPGIPL-TAMK--VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 234 ~vwd~~~~~~~~-~~~~--~~~~~v~~~~~s~~g~~ls 268 (270)
++||++....+. .++. .....|.+.+||.||..|-
T Consensus 332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv 369 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILV 369 (385)
T ss_pred EEEECCCCCCccCceEEeccccceeeeeeecccCcEEE
Confidence 999999843322 2222 1236799999999998763
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=7.7e-20 Score=140.03 Aligned_cols=199 Identities=13% Similarity=0.191 Sum_probs=149.9
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+....+..-.-+..+++.+||.++.+++..||.|.|||+.+...++.|++|. +.+.||.+++ +|..|.||+-|++|
T Consensus 500 rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht--DGascIdis~--dGtklWTGGlDntv 575 (705)
T KOG0639|consen 500 RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISK--DGTKLWTGGLDNTV 575 (705)
T ss_pred chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC--CCceeEEecC--CCceeecCCCccce
Confidence 4445555555678899999999999999999999999999999999999999 7799999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCC-ceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
|.||+++++... .+......+++...+..--++.+.. ...+-+...+..+..+.-|+. +.|++.|+.+
T Consensus 576 RcWDlregrqlq-------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 576 RCWDLREGRQLQ-------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred eehhhhhhhhhh-------hhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCcee
Confidence 999999987543 2333333445544444443333332 233434444444445555666 8899999855
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
+ +.+.|..+..|...-|..+...+ ....++++. .+-+ .+ |++||+.|....||.+
T Consensus 649 v--StGkDnlLnawrtPyGasiFqsk-------------E~SsVlsCD-IS~d---dk-yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 V--STGKDNLLNAWRTPYGASIFQSK-------------ESSSVLSCD-ISFD---DK-YIVTGSGDKKATVYEV 703 (705)
T ss_pred e--ecCchhhhhhccCccccceeecc-------------ccCcceeee-eccC---ce-EEEecCCCcceEEEEE
Confidence 4 44579999999999998887776 355677776 7753 44 9999999999888875
No 141
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=9.2e-19 Score=141.29 Aligned_cols=195 Identities=16% Similarity=0.226 Sum_probs=150.8
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE---eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS---WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
-...+++++.++-|++.+.|...|.|-+|++.+|-....+ ..|. .+|++++... -++.+++++.+|.+++||.
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~--~~V~gla~D~--~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK--GEVTGLAVDG--TNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc--CceeEEEecC--CCceEEEccCcceEEEEec
Confidence 3468999999999999999999999999999999888888 4677 6699999988 6688999999999999999
Q ss_pred cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecC
Q 024245 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE 169 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~ 169 (270)
.+..... .+.-....................+...+.++|..+.+.++ .+.+|.+ ++|||||+.++ +++
T Consensus 523 ~~k~l~~----~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR-~f~gh~nritd~~FS~DgrWli--sas 595 (910)
T KOG1539|consen 523 KKKVLKK----SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR-EFWGHGNRITDMTFSPDGRWLI--SAS 595 (910)
T ss_pred CCcceee----eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH-HhhccccceeeeEeCCCCcEEE--Eee
Confidence 9876433 22222222222222223333444555566778887776655 6777877 99999998665 566
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC-CcEEEEEcCC
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRN 240 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d-g~i~vwd~~~ 240 (270)
.|++|++||+.++.++..+. ....+.++. |+|+ |. +|||...| .-|++|--++
T Consensus 596 mD~tIr~wDlpt~~lID~~~-------------vd~~~~sls-~SPn---gD-~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 596 MDSTIRTWDLPTGTLIDGLL-------------VDSPCTSLS-FSPN---GD-FLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cCCcEEEEeccCcceeeeEe-------------cCCcceeeE-ECCC---CC-EEEEEEecCceEEEEEchh
Confidence 79999999999999998887 356788898 9995 55 99999998 5699997554
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3e-18 Score=123.55 Aligned_cols=176 Identities=18% Similarity=0.264 Sum_probs=129.5
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
.++.|..+.|+|.+..|+.++.||++++||+...+....+. |. .++.+.+|.+ + ..+++|+.||.|+.+|++++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~--~plL~c~F~d--~-~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HG--APLLDCAFAD--E-STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cC--CceeeeeccC--C-ceEEEeccCceEEEEEecCC
Confidence 47889999999988888889999999999999886666665 44 6799999998 6 88999999999999999987
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEE
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~i 176 (270)
... .+..+.....++. .++....++ +|+.|++|++
T Consensus 86 ~~~-----~igth~~~i~ci~--------------------------------------~~~~~~~vI--sgsWD~~ik~ 120 (323)
T KOG1036|consen 86 NED-----QIGTHDEGIRCIE--------------------------------------YSYEVGCVI--SGSWDKTIKF 120 (323)
T ss_pred cce-----eeccCCCceEEEE--------------------------------------eeccCCeEE--EcccCccEEE
Confidence 632 2333333333222 333333333 7999999999
Q ss_pred EeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee-ccCCCe
Q 024245 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPG 255 (270)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v 255 (270)
||.+.......+.. ...+.++. .. |. .|+.|..|..|.+||+++...+.+.-. ..+-.+
T Consensus 121 wD~R~~~~~~~~d~-------------~kkVy~~~-v~-----g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 121 WDPRNKVVVGTFDQ-------------GKKVYCMD-VS-----GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred Eecccccccccccc-------------CceEEEEe-cc-----CC-EEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence 99997555555541 23566655 43 22 899999999999999998666553322 234578
Q ss_pred eEEEeecC
Q 024245 256 LECSMWRN 263 (270)
Q Consensus 256 ~~~~~s~~ 263 (270)
.++++-|+
T Consensus 181 R~v~~~pn 188 (323)
T KOG1036|consen 181 RCVALVPN 188 (323)
T ss_pred EEEEEecC
Confidence 89998883
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=4.5e-19 Score=133.53 Aligned_cols=173 Identities=22% Similarity=0.291 Sum_probs=128.3
Q ss_pred CCCEEEEecCCCcEEEEeCCCCce---e----------------E--EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 29 TKPILFAGTTGGELRIWDTVQHRT---V----------------S--SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 29 ~~~~l~s~~~dg~i~vwd~~~~~~---~----------------~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.|+++|.|..|..|.|||+.-... . + .-.+|+ +.|.+++|+.. ..+.|+|||.|.+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT--davl~Ls~n~~-~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT--DAVLALSWNRN-FRNVLASGSADKT 267 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch--HHHHHHHhccc-cceeEEecCCCce
Confidence 367999999999999999853110 0 0 112455 66889999873 3478999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 167 (270)
|++||+.++++.. .+..+...+.. +.|+|....+++ +
T Consensus 268 V~lWD~~~g~p~~----s~~~~~k~Vq~--------------------------------------l~wh~~~p~~LL-s 304 (463)
T KOG0270|consen 268 VKLWDVDTGKPKS----SITHHGKKVQT--------------------------------------LEWHPYEPSVLL-S 304 (463)
T ss_pred EEEEEcCCCCcce----ehhhcCCceeE--------------------------------------EEecCCCceEEE-e
Confidence 9999999997644 44434333332 347777666665 7
Q ss_pred cCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 168 GEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
|+.|++|.+.|+|.. ..-..++ ..+.+-.++ |.|... ..++++..||+|+-+|+|.+++++.
T Consensus 305 Gs~D~~V~l~D~R~~~~s~~~wk-------------~~g~VEkv~-w~~~se---~~f~~~tddG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 305 GSYDGTVALKDCRDPSNSGKEWK-------------FDGEVEKVA-WDPHSE---NSFFVSTDDGTVYYFDIRNPGKPVW 367 (463)
T ss_pred ccccceEEeeeccCccccCceEE-------------eccceEEEE-ecCCCc---eeEEEecCCceEEeeecCCCCCcee
Confidence 999999999999942 2222233 234566666 888633 3899999999999999999999999
Q ss_pred eeeccCCCeeEEEeecCC
Q 024245 247 AMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s~~g 264 (270)
+++.|.++|.+|++++.-
T Consensus 368 t~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 368 TLKAHDDEISGLSVNIQT 385 (463)
T ss_pred EEEeccCCcceEEecCCC
Confidence 999999999999998754
No 144
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.1e-19 Score=132.47 Aligned_cols=190 Identities=17% Similarity=0.183 Sum_probs=130.3
Q ss_pred EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 101 (270)
.+++|+.+|..|++|+.||.+|||+..+...+.....|. ..|.++.|+| ||++|++.+.| ..+||+.+++..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~--~eV~DL~FS~--dgk~lasig~d-~~~VW~~~~g~~~a- 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHH--AEVKDLDFSP--DGKFLASIGAD-SARVWSVNTGAALA- 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhc--CccccceeCC--CCcEEEEecCC-ceEEEEeccCchhh-
Confidence 789999999999999999999999988887777777777 5599999999 99999999999 89999999985433
Q ss_pred CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC---CeEEEEecCCCceEEEEe
Q 024245 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG---PKYMAVAGEQLSEVEIWD 178 (270)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~d~~i~iwd 178 (270)
..+.......+.. +.|+.++ ..++++.-..-+.|+.||
T Consensus 222 -~~t~~~k~~~~~~--------------------------------------cRF~~d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 222 -RKTPFSKDEMFSS--------------------------------------CRFSVDNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred -hcCCcccchhhhh--------------------------------------ceecccCCCceEEEEEecCCCCceeEEE
Confidence 1110111111100 2233333 344444555556777776
Q ss_pred CCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEE
Q 024245 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC 258 (270)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 258 (270)
+.....-..+.. .........+.+++ .++ +|+ +++.|+.||.|-|++..+.......-+.|...|+.+
T Consensus 263 ~~~w~~~~~l~~-------~~~~~~~~siSsl~-VS~---dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l 330 (398)
T KOG0771|consen 263 ISLWSGSNFLRL-------RKKIKRFKSISSLA-VSD---DGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL 330 (398)
T ss_pred eeeeccccccch-------hhhhhccCcceeEE-EcC---CCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE
Confidence 643221111110 00000122566676 777 566 999999999999999998433344445799999999
Q ss_pred EeecCCCcee
Q 024245 259 SMWRNPITMS 268 (270)
Q Consensus 259 ~~s~~g~~ls 268 (270)
.|+||.+++-
T Consensus 331 tF~Pdsr~~~ 340 (398)
T KOG0771|consen 331 TFSPDSRYLA 340 (398)
T ss_pred EEcCCcCccc
Confidence 9999988754
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.4e-18 Score=122.88 Aligned_cols=204 Identities=14% Similarity=0.217 Sum_probs=135.4
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEee-----------------
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP----------------- 72 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~----------------- 72 (270)
+-+.+.+|..+|++++||++|+.|+++|.|..|.+||+..|.+++.+... ++|+...|+|
T Consensus 57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~---spv~~~q~hp~k~n~~va~~~~~sp~v 133 (405)
T KOG1273|consen 57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---SPVWGAQWHPRKRNKCVATIMEESPVV 133 (405)
T ss_pred hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc---CccceeeeccccCCeEEEEEecCCcEE
Confidence 45678899999999999999999999999999999999999888776544 3345444444
Q ss_pred ----------------------------CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceeccc-ceEEEEeeccCCc
Q 024245 73 ----------------------------SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPY 123 (270)
Q Consensus 73 ----------------------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 123 (270)
...|+++++|...|.+.++|.++.+++. .++... .....+.+. ..
T Consensus 134 i~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~va----s~rits~~~IK~I~~s--~~ 207 (405)
T KOG1273|consen 134 IDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVA----SFRITSVQAIKQIIVS--RK 207 (405)
T ss_pred EEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeee----eeeechheeeeEEEEe--cc
Confidence 0146788888888999999988876654 222211 112222222 22
Q ss_pred cceecCCCCce---EEEeccCc------eee--eccCC------CCCeEecCCCCeEEEEecCCCceEEEEeCCCcceee
Q 024245 124 ANAKQANEPKD---CYEREVGE------TVD--TDSLC------DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186 (270)
Q Consensus 124 ~~~~~~~~~~~---~~~~~~~~------~~~--~~~~~------~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 186 (270)
+..+.....++ .+++..-. .+. ..++. -..++|+.+|.++++.+ .....++||.-..|.+++
T Consensus 208 g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s-~~aHaLYIWE~~~GsLVK 286 (405)
T KOG1273|consen 208 GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS-ARAHALYIWEKSIGSLVK 286 (405)
T ss_pred CcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc-ccceeEEEEecCCcceee
Confidence 22233333333 33333110 000 00100 11189999999988755 557899999999999999
Q ss_pred eeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
.+. |.. ......+. |+|..+ .+++- ..|.|++|....
T Consensus 287 ILh--------G~k---gE~l~DV~-whp~rp----~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 287 ILH--------GTK---GEELLDVN-WHPVRP----IIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred eec--------CCc---hhheeecc-ccccee----eeeec-cCCceEEEEeec
Confidence 998 332 23566777 998644 56665 789999998764
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2e-19 Score=143.94 Aligned_cols=214 Identities=16% Similarity=0.233 Sum_probs=155.6
Q ss_pred CCcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
.+.+..|..|+..|+++.|++ ...+|++||.||.|++||++..+...++.+.. ..|..++|+|. .++.++++.+.|
T Consensus 123 nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nS--ESiRDV~fsp~-~~~~F~s~~dsG 199 (839)
T KOG0269|consen 123 NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNS--ESIRDVKFSPG-YGNKFASIHDSG 199 (839)
T ss_pred chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccc--hhhhceeeccC-CCceEEEecCCc
Confidence 456778999999999999999 56699999999999999999998888888866 77999999997 568999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCc---eEEEeccCceeee--ccC-CCCC-eEecCC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK---DCYEREVGETVDT--DSL-CDSK-DDVPAE 159 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~-~~~~-~~~s~~ 159 (270)
.+.+||++... ++.+.+..+.....+ +.++|....+++++.+ .+|+....+.... .-. .... +.|-|+
T Consensus 200 ~lqlWDlRqp~---r~~~k~~AH~GpV~c--~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 200 YLQLWDLRQPD---RCEKKLTAHNGPVLC--LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred eEEEeeccCch---hHHHHhhcccCceEE--EeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 99999998765 344566666655544 4445566666666655 4577665432221 111 1111 899999
Q ss_pred CCeEEEEecC-CCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 160 GPKYMAVAGE-QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 160 ~~~~~~~~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
.++.|++++. .|-.|+|||++-.- +..++. .|.. .+..++ |... |-. .|.+++.||+|..-.
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--------eH~~----~vt~i~-W~~~--d~~-~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--------EHTD----SVTGIA-WDSG--DRI-NLWSCSKDGTVLQHL 338 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeee--------ccCc----ccccee-ccCC--Cce-eeEeecCccHHHHhh
Confidence 9988875443 37789999998544 445555 4643 455554 7642 233 899999999998877
Q ss_pred cCCCCcce
Q 024245 238 IRNPGIPL 245 (270)
Q Consensus 238 ~~~~~~~~ 245 (270)
+++...++
T Consensus 339 ~knat~pi 346 (839)
T KOG0269|consen 339 FKNATTPI 346 (839)
T ss_pred hhcccChh
Confidence 76644443
No 147
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=1.7e-17 Score=134.11 Aligned_cols=245 Identities=17% Similarity=0.282 Sum_probs=152.8
Q ss_pred CcccccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
+.+.+++.-.+.|+.++|..||+ .||+|+..|.+.+||++..+.+..+. .|. +.|....|.| ....+++++.|+
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~--~sv~~~~fl~--~epVl~ta~~Dn 310 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY--GSVTGATFLP--GEPVLVTAGADN 310 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc--CCcccceecC--CCceEeeccCCC
Confidence 34556664459999999999988 67888888999999999887776665 665 6699999999 878899999999
Q ss_pred cEEEEEccCCccCC----------CCcccee--cccceE-----------------------------------------
Q 024245 87 TVKCWDIENGGLSS----------NPSLTIK--TNSYHF----------------------------------------- 113 (270)
Q Consensus 87 ~i~~wd~~~~~~~~----------~~~~~~~--~~~~~~----------------------------------------- 113 (270)
.+++|=.+++.-.. .|...+. +.....
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST 390 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence 99888554322100 0000000 000000
Q ss_pred -----------------------------------------------------------EEEeeccCCccce---ecCCC
Q 024245 114 -----------------------------------------------------------CKLSLVKEPYANA---KQANE 131 (270)
Q Consensus 114 -----------------------------------------------------------~~~~~~~~~~~~~---~~~~~ 131 (270)
...+++.+.++.+ ....+
T Consensus 391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG 470 (910)
T ss_pred hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence 0000000011100 11112
Q ss_pred CceEEEeccCceeeec--cCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCC------------
Q 024245 132 PKDCYEREVGETVDTD--SLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG------------ 195 (270)
Q Consensus 132 ~~~~~~~~~~~~~~~~--~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------ 195 (270)
.+..+++..+-..... ...|.. ..++-|+.+-++++++.+|.+++||.....++..+...+...
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLA 550 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhh
Confidence 2222333333222211 123333 445555544333466679999999998777655554322110
Q ss_pred ---------------------CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245 196 ---------------------SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (270)
Q Consensus 196 ---------------------~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 254 (270)
..||. ..+++++ |+| ||+ +|++++.|++|++||+.+ +.++..+.. ..+
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~----nritd~~-FS~---Dgr-WlisasmD~tIr~wDlpt-~~lID~~~v-d~~ 619 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHG----NRITDMT-FSP---DGR-WLISASMDSTIRTWDLPT-GTLIDGLLV-DSP 619 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccc----cceeeeE-eCC---CCc-EEEEeecCCcEEEEeccC-cceeeeEec-CCc
Confidence 02453 3577777 999 566 999999999999999999 888877764 678
Q ss_pred eeEEEeecCCCcee
Q 024245 255 GLECSMWRNPITMS 268 (270)
Q Consensus 255 v~~~~~s~~g~~ls 268 (270)
++++.|||+|.+|.
T Consensus 620 ~~sls~SPngD~LA 633 (910)
T KOG1539|consen 620 CTSLSFSPNGDFLA 633 (910)
T ss_pred ceeeEECCCCCEEE
Confidence 99999999999975
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=125.87 Aligned_cols=226 Identities=12% Similarity=0.139 Sum_probs=155.1
Q ss_pred ccEEEEEEe-------CCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCc---ceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 19 ASVTDVCFH-------QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH---GIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 19 ~~v~~~~~s-------~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
..|...+|- |+..++|+.+++.-|.+||.-+|+....+.+..+.+ .-.+++|+| ||..|++|- ...|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGy-krci 181 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGY-KRCI 181 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeecc-cceE
Confidence 456777664 566799999999999999999999888877644322 246899999 999998764 5689
Q ss_pred EEEEc-cCCccCCCCccceec--ccceEEEEeeccCCccc-eecCCCCceEEEec--cCceeeeccCCCCC----eEecC
Q 024245 89 KCWDI-ENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYAN-AKQANEPKDCYERE--VGETVDTDSLCDSK----DDVPA 158 (270)
Q Consensus 89 ~~wd~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~s~ 158 (270)
++||+ +.|+... ...++.. .....+...+++++... ..+.++......+. .+..+...+.+|.. +.|.+
T Consensus 182 rvFdt~RpGr~c~-vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 182 RVFDTSRPGRDCP-VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEeeccCCCCCCc-chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 99999 5554322 1111111 11111222233333332 45555555554443 34455556667777 89999
Q ss_pred CCCeEEEEecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 159 EGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
+|+.++. .+-.|-.|-.||+|.. .++..+. +|....+..+ . |.-+ ++++ +|++|+.||.|++||
T Consensus 261 dGn~lfs-GaRk~dkIl~WDiR~~~~pv~~L~--------rhv~~TNQRI---~-FDld-~~~~-~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 261 DGNKLFS-GARKDDKILCWDIRYSRDPVYALE--------RHVGDTNQRI---L-FDLD-PKGE-ILASGDTDGSVRVWD 325 (406)
T ss_pred CcCeecc-cccCCCeEEEEeehhccchhhhhh--------hhccCccceE---E-EecC-CCCc-eeeccCCCccEEEEe
Confidence 9998874 3445788999999854 5777887 6654323222 2 4322 2466 999999999999999
Q ss_pred cCCCCcceeeeeccCCCeeEEEeecC
Q 024245 238 IRNPGIPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 238 ~~~~~~~~~~~~~~~~~v~~~~~s~~ 263 (270)
++..+.++..+..++..++.++++|-
T Consensus 326 lk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 326 LKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred cCCCCCcccccccccccccceecCcc
Confidence 99988888888889999999999986
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=8.9e-18 Score=125.36 Aligned_cols=87 Identities=26% Similarity=0.410 Sum_probs=74.6
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCC--------C--------CceeEEEeecCCCcceEEEEEeeC
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--------Q--------HRTVSSSWVHSAAHGIVSVATGPS 73 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~--------~--------~~~~~~~~~~~~~~~v~~~~~~~~ 73 (270)
.+..|..|+.+|+++.|+|+|++||||+.+|.|.+|-.. + ....+.+.+|. ..|+.++|+|
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~--~diydL~Ws~- 133 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR--DDIYDLAWSP- 133 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc--cchhhhhccC-
Confidence 456788999999999999999999999999999999866 2 12334566777 5599999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245 74 IGLNKVISQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 74 ~~~~~l~s~~~d~~i~~wd~~~~~~~~ 100 (270)
+++++++++.|..+++||+..+....
T Consensus 134 -d~~~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 134 -DSNFLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred -CCceeeeeeccceEEEEEeccceeEe
Confidence 99999999999999999999997654
No 150
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.2e-18 Score=133.51 Aligned_cols=208 Identities=17% Similarity=0.280 Sum_probs=149.6
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC--------CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
.++..|.+.|+.++|+|....|++++.||.|.+|++.. -+++.+|.+|. ++|.|+++.+ ++..+++|+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~--gPVl~v~v~~--n~~~~ysgg 363 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE--GPVLCVVVPS--NGEHCYSGG 363 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc--CceEEEEecC--CceEEEeec
Confidence 37888999999999999888999999999999999932 25777888998 7799999999 999999999
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
-||+|+.|++.... .. .. ......+...+.||.. +++|+.
T Consensus 364 ~Dg~I~~w~~p~n~-dp-----~d------------------------------s~dp~vl~~~l~Ghtdavw~l~~s~~ 407 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQ-DP-----DD------------------------------SYDPSVLSGTLLGHTDAVWLLALSST 407 (577)
T ss_pred cCceeeeeccCCCC-Cc-----cc------------------------------ccCcchhccceeccccceeeeeeccc
Confidence 99999999886221 00 00 0001122234455555 677777
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCC---------------------------------------CCcc
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS---------------------------------------PNFS 200 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------------------------------~~h~ 200 (270)
..+++ +++.||++++|+.....+ .++..+..... .+-.
T Consensus 408 ~~~Ll--scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~ 484 (577)
T KOG0642|consen 408 KDRLL--SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASP 484 (577)
T ss_pred cccee--eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCC
Confidence 77655 566799999999765544 22221110000 0000
Q ss_pred -cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 201 -SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 201 -~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
......+..+. ++|.. . +.+++.+|+.|+++|..+ +.++.....|...++++++.|+|.+|-
T Consensus 485 ~~~~~~~in~vV-s~~~~---~-~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 485 GPRRYPQINKVV-SHPTA---D-ITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLM 547 (577)
T ss_pred cccccCccceEE-ecCCC---C-eeEecccCCceecccccc-cccchheeeccceecceeecCCCceEE
Confidence 00112234444 67753 2 899999999999999999 999999999999999999999998864
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=1.2e-17 Score=132.36 Aligned_cols=247 Identities=16% Similarity=0.163 Sum_probs=162.0
Q ss_pred CcccccccccccEEEEEEeCCCC---EEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
..+.++.||.++|+|+.|-|+.+ +|++|+.|+.|.+|.++... ++..+.+|. +.++++.. .........
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~----~~~~cv~a--~~~~~~~~~ 118 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC----KECVCVVA--RSSVMTCKA 118 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc----eeEEEEEe--eeeEEEeec
Confidence 35678899999999999999777 89999999999999998544 444555544 55666655 323333337
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCc----eeeeccCCCCC----eE
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE----TVDTDSLCDSK----DD 155 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~ 155 (270)
.|+.+.+||.+..+......+.+........+++....+....++.++.+...++.... .....+.||.. ++
T Consensus 119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~ 198 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA 198 (764)
T ss_pred cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence 89999999996554211112222222222223444444555666777777777776555 45567889988 88
Q ss_pred ecCCCC-eEEEEecCCCceEEEEeCCCcceee---------------------eec--cCcCCCCCCcccCCCceeeeee
Q 024245 156 VPAEGP-KYMAVAGEQLSEVEIWDLNTAERCT---------------------RLH--QNSCGGSPNFSSKGRGMCMAVQ 211 (270)
Q Consensus 156 ~s~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~---------------------~~~--~~~~~~~~~h~~~~~~~~~~~~ 211 (270)
|...+. .+++++++.|..||||.+.-+.... .+. -.......|| ...++++.
T Consensus 199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH----eDWV~sv~ 274 (764)
T KOG1063|consen 199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH----EDWVYSVW 274 (764)
T ss_pred hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc----ccceEEEE
Confidence 886554 6666789999999999865332110 000 0001122377 45889998
Q ss_pred ecCCCCCCCceEEEEecCCCcEEEEEcCCC-Cc-----ceeeeeccCCCeeEEEeecCCCceecC
Q 024245 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GI-----PLTAMKVHLEPGLECSMWRNPITMSEH 270 (270)
Q Consensus 212 ~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~-~~-----~~~~~~~~~~~v~~~~~s~~g~~ls~~ 270 (270)
|+|. +. .|++++.|.++-+|.-.+. +- .+..+.+.....++.-|+|++..|-.|
T Consensus 275 -W~p~---~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 275 -WHPE---GL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred -Eccc---hh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence 9995 44 8999999999999987652 11 222233444568899999999776544
No 152
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=8.6e-18 Score=120.83 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=129.9
Q ss_pred cccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCC-CCEEEEEeCCCcEEEE
Q 024245 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCW 91 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~d~~i~~w 91 (270)
-.+|+-.|..+.|-| |.-.+.+++.|.+++|||..+-+....|+.. +.|++-+++|..- ..++++|..|-.|++-
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me---~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME---GKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC---ceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 357899999999999 6668999999999999999998888777765 5599999998543 2456788888899999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d 171 (270)
|+.+|.... .+.++...+.. +.|+|..+++++ +|+.|
T Consensus 174 Di~SGs~sH----~LsGHr~~vla--------------------------------------V~Wsp~~e~vLa-tgsaD 210 (397)
T KOG4283|consen 174 DIASGSFSH----TLSGHRDGVLA--------------------------------------VEWSPSSEWVLA-TGSAD 210 (397)
T ss_pred eccCCccee----eeccccCceEE--------------------------------------EEeccCceeEEE-ecCCC
Confidence 999997644 44444444332 458888887776 78889
Q ss_pred ceEEEEeCCCc-ceeeeeccC------cCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 172 SEVEIWDLNTA-ERCTRLHQN------SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 172 ~~i~iwd~~~~-~~~~~~~~~------~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
|.|++||++.. .+...+... .....++ ..+.+..++ |.. +++ ++++++.|..+++|+..++
T Consensus 211 g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a----h~gkvngla-~tS---d~~-~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 211 GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA----HYGKVNGLA-WTS---DAR-YLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ceEEEEEeecccceeEEeecccCccCcccccccc----ccceeeeee-ecc---cch-hhhhccCccceEEeecccC
Confidence 99999999865 344444310 0111122 355777887 886 566 9999999999999998874
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=132.60 Aligned_cols=222 Identities=14% Similarity=0.127 Sum_probs=153.4
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
.|..++|-|||..|+.+..+ .+.+||...|..++++++|. +.|++++|+. +|+++++|+.|+.|.+|.-.-....
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHK--DtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHK--DTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccccccccc--ceEEEEEEcc--CCceeccCCCceeEEEeccccccee
Confidence 89999999999987776544 69999999999999999999 6699999999 9999999999999999987543322
Q ss_pred CCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-eEecCCCCeEEEEecCCCceEEEEe
Q 024245 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWD 178 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd 178 (270)
+ . .+...+.++++.+-........-+...+|................. .+|..||+++.+ |-.||+|.|-+
T Consensus 89 k----Y--SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylal--G~~nGTIsiRN 160 (1081)
T KOG1538|consen 89 K----Y--SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLAL--GMFNGTISIRN 160 (1081)
T ss_pred e----e--ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEE--eccCceEEeec
Confidence 2 1 2333444444444333334444445566766655444433333333 789999987765 66789999875
Q ss_pred CCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCC-----------------------------------------
Q 024245 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK----------------------------------------- 217 (270)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~----------------------------------------- 217 (270)
-. ++....+..+ +..+..+++++ |+|..
T Consensus 161 k~-gEek~~I~Rp---------gg~Nspiwsi~-~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~Cis 229 (1081)
T KOG1538|consen 161 KN-GEEKVKIERP---------GGSNSPIWSIC-WNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCIS 229 (1081)
T ss_pred CC-CCcceEEeCC---------CCCCCCceEEE-ecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhe
Confidence 43 4444444421 11223334443 33321
Q ss_pred --CCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 218 --SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 218 --~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+|. +++.|+.|+.+++|.-+ +..+.++.....+|+.++..|++++..
T Consensus 230 Yf~NGE-y~LiGGsdk~L~~fTR~--GvrLGTvg~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 230 YFTNGE-YILLGGSDKQLSLFTRD--GVRLGTVGEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred eccCCc-EEEEccCCCceEEEeec--CeEEeeccccceeEEEEEEccCCceEE
Confidence 1566 88888899999998644 666777766778999999999998753
No 154
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=1e-16 Score=129.21 Aligned_cols=234 Identities=18% Similarity=0.188 Sum_probs=150.2
Q ss_pred ccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCce--eEE--EeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT--VSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 17 h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~--~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
-...|+|+.|+| +..+||.|..+|.|.+||+..+.. ... ...+.+..+|..+.|.....+.-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 357899999999 777999999999999999987654 222 223444488999999873233459999999999999
Q ss_pred EccCCccCCCCc-cc-ee------cccceEEEEeeccCCccceecCCCCceEEE-eccCc--ee------eeccCCCCC-
Q 024245 92 DIENGGLSSNPS-LT-IK------TNSYHFCKLSLVKEPYANAKQANEPKDCYE-REVGE--TV------DTDSLCDSK- 153 (270)
Q Consensus 92 d~~~~~~~~~~~-~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~------~~~~~~~~~- 153 (270)
+++.-....... .. .. ........+.+.......++.......++. .+.+. .. ...+..|..
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 887544311000 00 00 011111222222222222222222222222 11111 11 112222333
Q ss_pred ---eEecCCCCeEEEEecCCCceEEEEeCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245 154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229 (270)
Q Consensus 154 ---~~~s~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~ 229 (270)
+.++|-+..+++++| |.+++||... ...++..+.. + ...+++++ |+|..+ ..++++..
T Consensus 401 v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~~--------~----~~~v~~va-WSptrp---avF~~~d~ 462 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLDS--------S----PDYVTDVA-WSPTRP---AVFATVDG 462 (555)
T ss_pred eEeeecCCCccceeeeec--cceeEeccccCCCCcchhhhh--------c----cceeeeeE-EcCcCc---eEEEEEcC
Confidence 888999988887665 8999999988 5667776662 2 34588888 999855 28999999
Q ss_pred CCcEEEEEcCCC-CcceeeeeccCCCeeEEEeecCCCcee
Q 024245 230 DGSILVWDIRNP-GIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 230 dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
||.|.+||+... ..|+.+.+.+....+.+.|+++|+.|.
T Consensus 463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~la 502 (555)
T KOG1587|consen 463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLA 502 (555)
T ss_pred CCceehhhhhccccCCcccccccccccceeecCCCCcEEE
Confidence 999999998752 457777776667778888999888764
No 155
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=2.5e-16 Score=120.98 Aligned_cols=217 Identities=16% Similarity=0.142 Sum_probs=144.4
Q ss_pred ccccc-cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 13 VLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 13 ~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
.++++ +.-|.|++|.++|. +++|..+|.|.||+....+..+....|. +.|.+++... +| .|++|+.|+.|..|
T Consensus 240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L~~lr--~G-tllSGgKDRki~~W 313 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSLCMLR--DG-TLLSGGKDRKIILW 313 (626)
T ss_pred ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceEEEEEec--Cc-cEeecCccceEEec
Confidence 34443 35799999999985 6799999999999998777777666777 7799999998 85 46669999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~ 165 (270)
|-.-.+ .+ -..++........+..... . .....+...+ =.++++-.+ ...+|.. ++.+|+...++
T Consensus 314 d~~y~k-~r--~~elPe~~G~iRtv~e~~~-d--i~vGTtrN~iL~Gt~~~~f~~--~v~gh~delwgla~hps~~q~~- 384 (626)
T KOG2106|consen 314 DDNYRK-LR--ETELPEQFGPIRTVAEGKG-D--ILVGTTRNFILQGTLENGFTL--TVQGHGDELWGLATHPSKNQLL- 384 (626)
T ss_pred cccccc-cc--cccCchhcCCeeEEecCCC-c--EEEeeccceEEEeeecCCceE--EEEecccceeeEEcCCChhhee-
Confidence 932222 11 1222333333332222111 1 1111111111 122222222 2233433 78889887554
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
+++.|+.+++|+ ..++..+.. ....+.++. |+|. | .+|.|...|...+.|.++ ...+
T Consensus 385 -T~gqdk~v~lW~--~~k~~wt~~-------------~~d~~~~~~-fhps---g--~va~Gt~~G~w~V~d~e~-~~lv 441 (626)
T KOG2106|consen 385 -TCGQDKHVRLWN--DHKLEWTKI-------------IEDPAECAD-FHPS---G--VVAVGTATGRWFVLDTET-QDLV 441 (626)
T ss_pred -eccCcceEEEcc--CCceeEEEE-------------ecCceeEee-ccCc---c--eEEEeeccceEEEEeccc-ceeE
Confidence 566799999999 455554444 234566777 9995 4 799999999999999998 6655
Q ss_pred eeeeccCCCeeEEEeecCCCcee
Q 024245 246 TAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 246 ~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
..-.. .++++.++|+|+|.+|.
T Consensus 442 ~~~~d-~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 442 TIHTD-NEQLSVVRYSPDGAFLA 463 (626)
T ss_pred EEEec-CCceEEEEEcCCCCEEE
Confidence 55555 88999999999999875
No 156
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=121.36 Aligned_cols=174 Identities=19% Similarity=0.274 Sum_probs=124.4
Q ss_pred CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (270)
Q Consensus 31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 110 (270)
..+|++-..|.|++||..+++.+..++++. ..+..+.|........+.+++.||+|++||+++..... .+.....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~--~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP--ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--RISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC--CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--heeccCCC
Confidence 468888889999999999999999999988 55889999774345678899999999999999876433 23322222
Q ss_pred -ceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC----CCceEEEEeCCCcce-
Q 024245 111 -YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE----QLSEVEIWDLNTAER- 184 (270)
Q Consensus 111 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~d~~i~iwd~~~~~~- 184 (270)
..+.++... .. ..++ ++|. .+..|.+||+|..+.
T Consensus 117 ~~~f~~ld~n--------------------------------------ck-~~ii-~~GtE~~~s~A~v~lwDvR~~qq~ 156 (376)
T KOG1188|consen 117 GTPFICLDLN--------------------------------------CK-KNII-ACGTELTRSDASVVLWDVRSEQQL 156 (376)
T ss_pred CCcceEeecc--------------------------------------Cc-CCeE-EeccccccCceEEEEEEeccccch
Confidence 111111110 11 1222 2332 367899999998776
Q ss_pred eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc---ceeeeeccCCCeeEEEee
Q 024245 185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI---PLTAMKVHLEPGLECSMW 261 (270)
Q Consensus 185 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~s 261 (270)
+..+.. .| ..-++++. |+|..++ +|++||.||.|.|+|++...+ .+.++. |...|..+.|.
T Consensus 157 l~~~~e-------SH----~DDVT~lr-FHP~~pn---lLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~ 220 (376)
T KOG1188|consen 157 LRQLNE-------SH----NDDVTQLR-FHPSDPN---LLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWL 220 (376)
T ss_pred hhhhhh-------hc----cCcceeEE-ecCCCCC---eEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeee
Confidence 666664 56 44688888 9997543 999999999999999986432 233333 66779999999
Q ss_pred cCC
Q 024245 262 RNP 264 (270)
Q Consensus 262 ~~g 264 (270)
.++
T Consensus 221 ~~~ 223 (376)
T KOG1188|consen 221 SKK 223 (376)
T ss_pred cCC
Confidence 887
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=3.2e-17 Score=128.95 Aligned_cols=209 Identities=19% Similarity=0.257 Sum_probs=135.2
Q ss_pred ccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCc--------------------ee-------EEEeecCC--C
Q 024245 13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR--------------------TV-------SSSWVHSA--A 62 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~--------------------~~-------~~~~~~~~--~ 62 (270)
.+.||+..|.+++|.| +...+++|++||.|.|||+.-.. +. ..-..+.. .
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 3889999999999999 55689999999999999986321 00 00011111 0
Q ss_pred cceEEEEEeeCCCCCEEEEEeC-CCcEEEEEccCCccCC----CCccceecc---cceEEEEeeccCCcc-ceecCCCCc
Q 024245 63 HGIVSVATGPSIGLNKVISQGR-DGTVKCWDIENGGLSS----NPSLTIKTN---SYHFCKLSLVKEPYA-NAKQANEPK 133 (270)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~ 133 (270)
..|+.+.| . |...|++++. |+.|+|||+++..... .....++.+ ......+..+..... ......+.+
T Consensus 219 ssvTvv~f-k--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 219 SSVTVVLF-K--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred eeeEEEEE-e--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence 22444554 4 5589998887 9999999998765322 112222222 233344444443232 233345566
Q ss_pred eEEEeccCc-eeeeccCCCCC------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCce
Q 024245 134 DCYEREVGE-TVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM 206 (270)
Q Consensus 134 ~~~~~~~~~-~~~~~~~~~~~------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 206 (270)
..|++.... .+...+.++.. -..+|++.+++ +|+.|...++|.+.+.+.--.+.. ||. ..
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~--SgSsd~~ayiw~vs~~e~~~~~l~-------Ght----~e 362 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL--SGSSDEQAYIWVVSSPEAPPALLL-------GHT----RE 362 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCCCCceEe--ccCCCcceeeeeecCccCChhhhh-------Ccc----eE
Confidence 667776543 33334444444 56789998765 788899999999987664433332 673 46
Q ss_pred eeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
+.+++ |.|.. .. -++|++.|-.+++|++..+
T Consensus 363 Vt~V~-w~pS~-~t--~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 363 VTTVR-WLPSA-TT--PVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEEEe-ecccc-CC--CceeeccCcceEEEeccCc
Confidence 77787 88863 23 5888899999999999763
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.77 E-value=1.6e-16 Score=122.03 Aligned_cols=197 Identities=19% Similarity=0.341 Sum_probs=149.3
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCC--------cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGG--------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
-+.+.||...|.||+.+|+...+++|-.-| .+++||..+-..+..+.... ..|.+++|++.+.|.+|...
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~--~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFD--RGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecccc--ccceeeeecccCCCceEEEe
Confidence 355779999999999999988888876555 49999988888887777555 66999999998778877654
Q ss_pred --eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC
Q 024245 83 --GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (270)
Q Consensus 83 --~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 160 (270)
+.+..+.+||...+.... ..+...... +. ..|.|.+
T Consensus 175 D~s~~h~lSVWdWqk~~~~~----~vk~sne~v--~~------------------------------------a~FHPtd 212 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLG----PVKTSNEVV--FL------------------------------------ATFHPTD 212 (626)
T ss_pred cCCCccccchhhchhhhccC----cceeccceE--EE------------------------------------EEeccCC
Confidence 456688999998775433 111111110 00 3589999
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
.++++++| .+.+.+|+++.+...++.. -........+.+++ |.++ | -++||.++|.|.||+..+
T Consensus 213 ~nliit~G--k~H~~Fw~~~~~~l~k~~~--------~fek~ekk~Vl~v~-F~en---g--dviTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 213 PNLIITCG--KGHLYFWTLRGGSLVKRQG--------IFEKREKKFVLCVT-FLEN---G--DVITGDSGGNILIWSKGT 276 (626)
T ss_pred CcEEEEeC--CceEEEEEccCCceEEEee--------ccccccceEEEEEE-EcCC---C--CEEeecCCceEEEEeCCC
Confidence 99988665 4899999999887655433 12222447899998 9984 5 499999999999999987
Q ss_pred CCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 241 PGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+..+....|.+.|.+++.-.+|.+||
T Consensus 277 -~~~~k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 277 -NRISKQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred -ceEEeEeeecCCceEEEEEecCccEee
Confidence 555555559999999999999999988
No 159
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=1.8e-17 Score=131.39 Aligned_cols=199 Identities=19% Similarity=0.222 Sum_probs=140.9
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
.++.|.||...|++++.+|+|+++||+... ..|++|+..+...++.+.+|. -.|+.|+|+| ++.+|++++.
T Consensus 517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs--LTVT~l~FSp--dg~~LLsvsR 592 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS--LTVTRLAFSP--DGRYLLSVSR 592 (764)
T ss_pred hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc--eEEEEEEECC--CCcEEEEeec
Confidence 467889999999999999999999998764 359999999988888999999 5699999999 9999999999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEE
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 164 (270)
|+++.+|......... +.+.....+. ..+|+ ..|+|++.+++
T Consensus 593 DRt~sl~~~~~~~~~e---~~fa~~k~Ht-------------------RIIWd----------------csW~pde~~Fa 634 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDE---FRFACLKAHT-------------------RIIWD----------------CSWSPDEKYFA 634 (764)
T ss_pred CceEEeeeeecccchh---hhhccccccc-------------------eEEEE----------------cccCcccceeE
Confidence 9999999985443211 1111111111 11222 34899998743
Q ss_pred EEecCCCceEEEEeCCCc--ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc-eEEEEecCCCcEEEEEcCCC
Q 024245 165 AVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~~~~dg~i~vwd~~~~ 241 (270)
+++.|.+|++|..... +.+..+.. ......+++++ |.|.....+ ..++.|-+.|.|.+|.....
T Consensus 635 --TaSRDK~VkVW~~~~~~d~~i~~~a~----------~~~~~aVTAv~-~~~~~~~e~~~~vavGle~GeI~l~~~~~~ 701 (764)
T KOG1063|consen 635 --TASRDKKVKVWEEPDLRDKYISRFAC----------LKFSLAVTAVA-YLPVDHNEKGDVVAVGLEKGEIVLWRRKRE 701 (764)
T ss_pred --EecCCceEEEEeccCchhhhhhhhch----------hccCCceeeEE-eeccccccccceEEEEecccEEEEEecccc
Confidence 7889999999998877 33333221 11244666776 776422221 27889999999999996511
Q ss_pred Cc-----------ceeeeeccCCCeeEEEeecC
Q 024245 242 GI-----------PLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 242 ~~-----------~~~~~~~~~~~v~~~~~s~~ 263 (270)
.+ ......+|...|+.+.|+|.
T Consensus 702 ~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 702 HRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred cccccceeeeeccccccccChHHhhheeEeccc
Confidence 11 11122356788999999975
No 160
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=2.8e-17 Score=117.91 Aligned_cols=187 Identities=18% Similarity=0.223 Sum_probs=137.1
Q ss_pred ccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCce---eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 17 h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
+.+++++..|+. +.+++.+.|-|-+..|||++++.. ...+-.|. ..|..++|... ..+.+++++.||.+|+||
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD--KEV~DIaf~~~-s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD--KEVYDIAFLKG-SRDVFASVGADGSVRMFD 225 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC--cceeEEEeccC-ccceEEEecCCCcEEEEE
Confidence 567899999998 778999999999999999998733 44566788 45999999982 236789999999999999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~ 172 (270)
++..+... +..- ....... .++ ++|++...+++++-+....
T Consensus 226 LR~leHST--IIYE-~p~~~~p----------------------------LlR--------LswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 226 LRSLEHST--IIYE-DPSPSTP----------------------------LLR--------LSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred ecccccce--EEec-CCCCCCc----------------------------cee--------eccCcCCchHHhhhhcCCc
Confidence 99765321 1100 0000000 000 5577777777776676678
Q ss_pred eEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc-----cee
Q 024245 173 EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----PLT 246 (270)
Q Consensus 173 ~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~-----~~~ 246 (270)
.|.|.|+|.. .++.++. +|. +.+..++ |.|..+ . .|.+++.|..+.+||+..... ++.
T Consensus 267 ~V~iLDiR~P~tpva~L~--------~H~----a~VNgIa-WaPhS~--~-hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVARLR--------NHQ----ASVNGIA-WAPHSS--S-HICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred eEEEEEecCCCcceehhh--------cCc----ccccceE-ecCCCC--c-eeeecCCcceEEEEecccccccCCCCchh
Confidence 8999999864 4677777 774 4677777 999733 3 899999999999999986433 444
Q ss_pred eeeccCCCeeEEEeec
Q 024245 247 AMKVHLEPGLECSMWR 262 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s~ 262 (270)
.+. -.+.|+.+.|++
T Consensus 331 ay~-a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSS 345 (364)
T ss_pred hhh-ccceeeeeeecc
Confidence 444 357899999996
No 161
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=125.81 Aligned_cols=173 Identities=17% Similarity=0.188 Sum_probs=119.4
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC---------CceeEEEeecCCCcceEEEEEeeCCCCCE
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---------HRTVSSSWVHSAAHGIVSVATGPSIGLNK 78 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 78 (270)
.+++..+.+|-..|+|+.|+-||.+|+|||.||.|.+|.+-. -++.+.+..|. -+|+.+...+-....+
T Consensus 113 G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht--lsITDl~ig~Gg~~~r 190 (476)
T KOG0646|consen 113 GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT--LSITDLQIGSGGTNAR 190 (476)
T ss_pred ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc--ceeEEEEecCCCccce
Confidence 467788899999999999999999999999999999998742 35777888888 6699999887222368
Q ss_pred EEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-CCceEEEeccC---------------c
Q 024245 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVG---------------E 142 (270)
Q Consensus 79 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~ 142 (270)
|+|+|.|.++++||+..+.++. ++. .+....++.++......+.... +.+...++... .
T Consensus 191 l~TaS~D~t~k~wdlS~g~LLl----ti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~ 265 (476)
T KOG0646|consen 191 LYTASEDRTIKLWDLSLGVLLL----TIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEEN 265 (476)
T ss_pred EEEecCCceEEEEEeccceeeE----EEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccc
Confidence 9999999999999999997644 221 1222222333322222222111 11111111110 1
Q ss_pred eeeeccCCCCC------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245 143 TVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 143 ~~~~~~~~~~~------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 189 (270)
.....+.||.. ++++-||..|+ +|+.||.|.|||+.+.++++++.
T Consensus 266 t~~~~~~Gh~~~~~ITcLais~DgtlLl--SGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 266 TQINVLVGHENESAITCLAISTDGTLLL--SGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ceeeeeccccCCcceeEEEEecCccEEE--eeCCCCCEEEEecchHHHHHHHh
Confidence 12224455554 88999997443 89999999999999999998887
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=3.3e-17 Score=125.59 Aligned_cols=224 Identities=13% Similarity=0.120 Sum_probs=147.2
Q ss_pred cEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 20 SVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 20 ~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
.+.++.|+.... .+++-+.|..+++|.-.... .+..+....+ +.-.|++... ...++++|+..+.|+|||++...
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-d~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-DNAFCVACAS--QSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc-chHHHHhhhh--cceeeeccCcCceeeehhhHHHH
Confidence 488999988653 34555678889999744320 1111111111 1234444444 33689999999999999999654
Q ss_pred cCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCc
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS 172 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~ 172 (270)
+.+ .++++...+..+...+......... ++.+.+..+.++........+... +.|+|..+.+|. +.+++|
T Consensus 113 ~hr----~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~-~asd~G 187 (673)
T KOG4378|consen 113 IHR----FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS-IASDKG 187 (673)
T ss_pred Hhh----hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE-eeccCC
Confidence 433 5666666666566555555444443 333333444443322211111111 789999887776 566799
Q ss_pred eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (270)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 252 (270)
.|.+||+....++..+.. .|..+ +..++ |+|. +.. +|++.+.|..|.+||.+. .+....+. ..
T Consensus 188 ~VtlwDv~g~sp~~~~~~-------~HsAP----~~gic-fsps--ne~-l~vsVG~Dkki~~yD~~s-~~s~~~l~-y~ 250 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASE-------AHSAP----CRGIC-FSPS--NEA-LLVSVGYDKKINIYDIRS-QASTDRLT-YS 250 (673)
T ss_pred eEEEEeccCCCcccchhh-------hccCC----cCcce-ecCC--ccc-eEEEecccceEEEeeccc-ccccceee-ec
Confidence 999999998888777765 67554 44444 9996 444 999999999999999997 66666665 46
Q ss_pred CCeeEEEeecCCCcee
Q 024245 253 EPGLECSMWRNPITMS 268 (270)
Q Consensus 253 ~~v~~~~~s~~g~~ls 268 (270)
.+...++|+++|.+|.
T Consensus 251 ~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLC 266 (673)
T ss_pred CCcceeeecCCceEEE
Confidence 7899999999999986
No 163
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=7e-16 Score=111.62 Aligned_cols=207 Identities=13% Similarity=0.175 Sum_probs=135.6
Q ss_pred cccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCC-------c--eeEEEeecCCCcceEEEEEeeCCCCCE
Q 024245 10 PVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH-------R--TVSSSWVHSAAHGIVSVATGPSIGLNK 78 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~-------~--~~~~~~~~~~~~~v~~~~~~~~~~~~~ 78 (270)
+-...+.|.+.|..+.|.+ -|+.+|+++.|+++.||.-... + ...++.... ..|+.+.|.|.+-|-.
T Consensus 51 ~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr--ssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 51 CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR--SSVTDVKFAPKHLGLK 128 (361)
T ss_pred EeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC--cceeEEEecchhcceE
Confidence 3456788999999999977 7899999999999999985211 1 223344344 6799999999877889
Q ss_pred EEEEeCCCcEEEEEccCCccCCCCcc--cee---cc--cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCC
Q 024245 79 VISQGRDGTVKCWDIENGGLSSNPSL--TIK---TN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD 151 (270)
Q Consensus 79 l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (270)
|++++.||.+|||+.........-.+ .+. .. .....++.
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C---------------------------------- 174 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC---------------------------------- 174 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE----------------------------------
Confidence 99999999999998754322110000 000 00 00000011
Q ss_pred CCeEecCC--CCeEEEEecCCC-----ceEEEEeCCCcc----eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245 152 SKDDVPAE--GPKYMAVAGEQL-----SEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220 (270)
Q Consensus 152 ~~~~~s~~--~~~~~~~~~~~d-----~~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g 220 (270)
+.|+|. .+.+++ .|+.+ +.++||....+. .+.++. +| ...+.+++ |.|+-...
T Consensus 175 --vsWn~sr~~~p~iA-vgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~--------d~----~dpI~di~-wAPn~Gr~ 238 (361)
T KOG2445|consen 175 --VSWNPSRMHEPLIA-VGSDEDAPHLNKVKIYEYNENGRKWLKVAELP--------DH----TDPIRDIS-WAPNIGRS 238 (361)
T ss_pred --EeeccccccCceEE-EEcccCCccccceEEEEecCCcceeeeehhcC--------CC----CCcceeee-eccccCCc
Confidence 223322 123444 34433 378888776543 223333 45 45677887 99973322
Q ss_pred ceEEEEecCCCcEEEEEcCCCC-------------------cceeeeeccCCCeeEEEeecCCCceec
Q 024245 221 FVNVLAGYEDGSILVWDIRNPG-------------------IPLTAMKVHLEPGLECSMWRNPITMSE 269 (270)
Q Consensus 221 ~~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~~~~~~v~~~~~s~~g~~ls~ 269 (270)
..+||+++.|| |+||.++... +.+..+.+|++.|+.++|+-.|..||+
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS 305 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence 34899999999 9999988311 234557789999999999999998874
No 164
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.5e-17 Score=125.19 Aligned_cols=224 Identities=17% Similarity=0.244 Sum_probs=141.5
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+.+.|.||++-|+|++|+.+|.+|++||.|-.+.|||.-..++++.+. +|. ..|.++.|-|..+...+++|..|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt--aNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT--ANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc--cceeEEeeeccCCCeEEEeccCcceE
Confidence 457799999999999999999999999999999999998888777764 677 66999999997666788899999999
Q ss_pred EEEEccCCccCC------CCccceecccceEEEEeeccC--CccceecCCCCceEEEeccCceeeeccCCCC--------
Q 024245 89 KCWDIENGGLSS------NPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLCDS-------- 152 (270)
Q Consensus 89 ~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 152 (270)
+++|+...+--. .+......+......+..... .........+....+|++....-......+.
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 999998532110 112222222222222222222 2223334445556667665322111111111
Q ss_pred -----CeEecCCCCeEEEEecCCCceEEEEeCCCcc------------------eeeeeccCcCCCCCCcccCCC-----
Q 024245 153 -----KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------------------RCTRLHQNSCGGSPNFSSKGR----- 204 (270)
Q Consensus 153 -----~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~h~~~~~----- 204 (270)
.+.++|...+++++ |+.|-..++||.+... ++..+. ++|.....
T Consensus 200 lielk~ltisp~rp~~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-------p~hlkn~~gn~~~ 271 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-------PGHLKNSQGNLDR 271 (758)
T ss_pred hheeeeeeecCCCCceEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec-------CccccCccccccc
Confidence 17899999988885 5568999999954211 122222 24431111
Q ss_pred --ceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 205 --GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 205 --~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
..++-+. |+|+ |..+|++-+. ..|+++|+.....+...+
T Consensus 272 ~~~~~t~vt-fnpN---GtElLvs~~g-EhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 272 YITCCTYVT-FNPN---GTELLVSWGG-EHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ceeeeEEEE-ECCC---CcEEEEeeCC-eEEEEEeecCCCCceeec
Confidence 1244455 9984 5435555554 489999999844444433
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=7.8e-17 Score=120.15 Aligned_cols=152 Identities=17% Similarity=0.229 Sum_probs=115.5
Q ss_pred EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCce
Q 024245 55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD 134 (270)
Q Consensus 55 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (270)
.+.+|. ++|..++|+|++| +.|+|||+|.+|.||++..+.+..... .
T Consensus 76 ~v~GHt--~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~lt-------e----------------------- 122 (472)
T KOG0303|consen 76 LVCGHT--APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLT-------E----------------------- 122 (472)
T ss_pred CccCcc--ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcc-------c-----------------------
Confidence 456787 7799999999855 999999999999999998765443111 0
Q ss_pred EEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeee
Q 024245 135 CYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV 210 (270)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 210 (270)
....+.+|.. +.|+|...++|+++| .|.+|.+|++.+++.+.++. | ...++++
T Consensus 123 ---------pvv~L~gH~rrVg~V~wHPtA~NVLlsag-~Dn~v~iWnv~tgeali~l~---------h----pd~i~S~ 179 (472)
T KOG0303|consen 123 ---------PVVELYGHQRRVGLVQWHPTAPNVLLSAG-SDNTVSIWNVGTGEALITLD---------H----PDMVYSM 179 (472)
T ss_pred ---------ceEEEeecceeEEEEeecccchhhHhhcc-CCceEEEEeccCCceeeecC---------C----CCeEEEE
Confidence 1113334444 678998888888555 58999999999999888876 4 5689999
Q ss_pred eecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC-eeEEEeecCCCcee
Q 024245 211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-GLECSMWRNPITMS 268 (270)
Q Consensus 211 ~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~s~~g~~ls 268 (270)
. |+-+ |. +|+|.+.|..|+|||.++ ++.+..-.+|.+. ...+.|-.+|.+++
T Consensus 180 s-fn~d---Gs-~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 180 S-FNRD---GS-LLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred E-eccC---Cc-eeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCceee
Confidence 8 9984 55 999999999999999999 8888777777642 34456666666543
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=2e-16 Score=115.17 Aligned_cols=195 Identities=11% Similarity=0.150 Sum_probs=137.1
Q ss_pred EEEEEEeCCCCEEEEecCCCcEEEEeCCCC------------ceeEEEeecCCCcceEEEEEeeC-----CCCCEEEEEe
Q 024245 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQH------------RTVSSSWVHSAAHGIVSVATGPS-----IGLNKVISQG 83 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s~~ 83 (270)
...+.|+|||..|++-+.|..+.+|++... +...++....+ ..|..-+|.+. .+.+++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg-~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEG-ETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccC-CEEEEEEeeeccccCCCccceeeecc
Confidence 346899999999999999999999998531 11122222222 45888888732 1567899999
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 163 (270)
.+..|++||.-+++... .+..-.+.... .+...++|+|||.++
T Consensus 131 r~~PIh~wdaftG~lra--Sy~~ydh~de~-----------------------------------taAhsL~Fs~DGeql 173 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRA--SYRAYDHQDEY-----------------------------------TAAHSLQFSPDGEQL 173 (406)
T ss_pred ccCceeeeecccccccc--chhhhhhHHhh-----------------------------------hhheeEEecCCCCeE
Confidence 99999999999997633 11111111100 011116799999988
Q ss_pred EEEecCCCceEEEEeC-CCcceeeeeccCcCCCCCCc-ccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 164 MAVAGEQLSEVEIWDL-NTAERCTRLHQNSCGGSPNF-SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
++ | ....|++||+ |.|.....+... .+ .....+.+.+++ |+|. +.. .++.|+...++-||.-..
T Consensus 174 fa--G-ykrcirvFdt~RpGr~c~vy~t~------~~~k~gq~giisc~a-~sP~--~~~-~~a~gsY~q~~giy~~~~- 239 (406)
T KOG2919|consen 174 FA--G-YKRCIRVFDTSRPGRDCPVYTTV------TKGKFGQKGIISCFA-FSPM--DSK-TLAVGSYGQRVGIYNDDG- 239 (406)
T ss_pred ee--c-ccceEEEeeccCCCCCCcchhhh------hcccccccceeeeee-ccCC--CCc-ceeeecccceeeeEecCC-
Confidence 73 5 4789999999 666633332210 11 122356677777 9997 334 899999999999998887
Q ss_pred CcceeeeeccCCCeeEEEeecCCCce
Q 024245 242 GIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
..++..+-+|.+.|+.++|.++|..|
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~l 265 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKL 265 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCee
Confidence 88999999999999999999999754
No 167
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=7.1e-17 Score=115.88 Aligned_cols=189 Identities=19% Similarity=0.215 Sum_probs=133.9
Q ss_pred cccccEEEEEEeCCCC-----EEEEecCCCcEEEEeCCCCce----eEEEee---cCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 16 GHRASVTDVCFHQTKP-----ILFAGTTGGELRIWDTVQHRT----VSSSWV---HSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~-----~l~s~~~dg~i~vwd~~~~~~----~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
.|.-+++.+.|.|+.. +||+.+ | .+++|.+...+. ...+.. ....+++++..|+.. +.+++.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence 4888999999999753 566654 3 699999874211 111111 111267999999875 568999999
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
-|-+..|||++++..- . ++..+-+|.. ++|...
T Consensus 171 iDTTCTiWdie~~~~~-----~--------------------------------------vkTQLIAHDKEV~DIaf~~~ 207 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSG-----T--------------------------------------VKTQLIAHDKEVYDIAFLKG 207 (364)
T ss_pred ccCeEEEEEEeecccc-----c--------------------------------------eeeEEEecCcceeEEEeccC
Confidence 9999999999987210 0 0111222222 668888
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC-cEEEEEc
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDI 238 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg-~i~vwd~ 238 (270)
+..+++++| .||++|+||+|..+-...+.. . .........++ |++.++ + ++|+-..|. .|.+.|+
T Consensus 208 s~~~FASvg-aDGSvRmFDLR~leHSTIIYE-------~--p~~~~pLlRLs-wnkqDp--n-ymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 208 SRDVFASVG-ADGSVRMFDLRSLEHSTIIYE-------D--PSPSTPLLRLS-WNKQDP--N-YMATFAMDSNKVVILDI 273 (364)
T ss_pred ccceEEEec-CCCcEEEEEecccccceEEec-------C--CCCCCcceeec-cCcCCc--h-HHhhhhcCCceEEEEEe
Confidence 888888655 599999999997764433332 0 11144677777 888633 3 888887775 5999999
Q ss_pred CCCCcceeeeeccCCCeeEEEeecCC
Q 024245 239 RNPGIPLTAMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~s~~g 264 (270)
+.+..++..+.+|.+.|+.|+|.|..
T Consensus 274 R~P~tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 274 RVPCTPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred cCCCcceehhhcCcccccceEecCCC
Confidence 99999999999999999999999954
No 168
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=5.4e-16 Score=124.07 Aligned_cols=238 Identities=13% Similarity=0.136 Sum_probs=164.3
Q ss_pred cccccccccEEEEEEeC-C----------CCEEEEecCCCcEEEEeCCCCceeEEE------------------------
Q 024245 12 AVLRGHRASVTDVCFHQ-T----------KPILFAGTTGGELRIWDTVQHRTVSSS------------------------ 56 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~-~----------~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------------ 56 (270)
..+--|...|+++.--| + ...+.+++.|++|++||+..+..-.++
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 34445888888887655 1 125889999999999999752111000
Q ss_pred -----------eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-
Q 024245 57 -----------WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA- 124 (270)
Q Consensus 57 -----------~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 124 (270)
......-++.+++++| +|++|++|..-|++++|++...+. ...++.+...+.++...+....
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp--~gqhLAsGDr~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSP--DGQHLASGDRGGNLRVYDLQELEY----TCFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECC--CcceecccCccCceEEEEehhhhh----hhheecccceeEEEeecCchhhh
Confidence 0011124699999999 999999999999999999987754 3467777777766666554333
Q ss_pred ceecCCCC---ceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCC
Q 024245 125 NAKQANEP---KDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197 (270)
Q Consensus 125 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 197 (270)
..++.++. +.++|+.....+..++.+|.. +.|...|-+.-+.+++.|..|.+=-.+.......+..
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r------- 589 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR------- 589 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc-------
Confidence 23344444 445777777788888999888 7888776333333555688765433332222333432
Q ss_pred CcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec---cCCCeeEEEeecCCCcee
Q 024245 198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 198 ~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~s~~g~~ls 268 (270)
+|..-....++.++ ..|+.. ++++++.|..|+|||+.+ ++..+.|++ |.+....+...|.|.||.
T Consensus 590 ~t~t~~ktTlYDm~-Vdp~~k----~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMA-VDPTSK----LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred cccccccceEEEee-eCCCcc----eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEE
Confidence 33344566788887 888643 999999999999999999 888888875 556777899999999874
No 169
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=1.4e-17 Score=134.91 Aligned_cols=230 Identities=16% Similarity=0.268 Sum_probs=158.7
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
-++.|.||..+|+|..|...|.++++|+.|..++||.++++.++..+.+|. +.|+.++.+. +..++++++.|..|+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--~ditdlavs~--~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS--GDITDLAVSS--NNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc--cccchhccch--hhhhhhhcccCceEE
Confidence 456788999999999999999999999999999999999999999999999 5599999988 767888999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCce--------------eee---------
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--------------VDT--------- 146 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--------- 146 (270)
+|.+..+.. +..+.++...+..+.+.... .....+...+||.+-.-. +..
T Consensus 258 vWrl~~~~p----vsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~ 330 (1113)
T KOG0644|consen 258 VWRLPDGAP----VSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR 330 (1113)
T ss_pred EEecCCCch----HHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence 999999854 44666666665544443322 223334445555441000 000
Q ss_pred ccC--------CCCC--eEecCCC----------CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCce
Q 024245 147 DSL--------CDSK--DDVPAEG----------PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM 206 (270)
Q Consensus 147 ~~~--------~~~~--~~~s~~~----------~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 206 (270)
... .|+. +++...+ ....+ +.-.+-.+.+|++.++...+.+. +|.+ .
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~-~ar~~~~~~vwnl~~g~l~H~l~--------ghsd----~ 397 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVV-TARNDHRLCVWNLYTGQLLHNLM--------GHSD----E 397 (1113)
T ss_pred cccccCCcccccchhhHhhhhccceEEEeccccccccce-eeeeeeEeeeeecccchhhhhhc--------cccc----c
Confidence 000 0000 1222111 11111 22234567889988888888777 6744 4
Q ss_pred eeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
++.+. ++|- +-+ ...+++.||...|||+-. +.+++...--...+..-+||+||..++
T Consensus 398 ~yvLd-~Hpf--n~r-i~msag~dgst~iwdi~e-g~pik~y~~gh~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 398 VYVLD-VHPF--NPR-IAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred eeeee-ecCC--CcH-hhhhccCCCceEeeeccc-CCcceeeecccceeeccccCCCCceEe
Confidence 55555 7775 344 788899999999999998 666655543345677789999987654
No 170
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.2e-15 Score=122.93 Aligned_cols=220 Identities=10% Similarity=0.015 Sum_probs=134.3
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE-eCCCc
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGT 87 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~ 87 (270)
+.+..|...+...+|+|||+.|+.++.+ ..|++||+.+++...... .. .....++|+| +|+.|+.+ +.+|.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~--g~~~~~~wSP--DG~~La~~~~~~g~ 271 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FR--GHNGAPAFSP--DGSRLAFASSKDGV 271 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CC--CccCceeECC--CCCEEEEEEecCCc
Confidence 4566778889999999999999887654 369999998875433221 11 2245789999 99988765 46887
Q ss_pred EEEE--EccCCccCCCCccceecccc--eEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCC-CCeEecCCCCe
Q 024245 88 VKCW--DIENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD-SKDDVPAEGPK 162 (270)
Q Consensus 88 i~~w--d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 162 (270)
+.|| |+.++... .+..... ....++.+...........+...+|.+.........+... ....|+|+|+.
T Consensus 272 ~~Iy~~d~~~~~~~-----~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ 346 (429)
T PRK01742 272 LNIYVMGANGGTPS-----QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKT 346 (429)
T ss_pred EEEEEEECCCCCeE-----eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCE
Confidence 6666 55554422 1222211 1122222222111122223455667654322111111111 22789999997
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC-C
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-P 241 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~-~ 241 (270)
++++ +. ++ +.+||+.+++...... .+ ....+. |+| ||+ +|+.++.+|.+.+|++.+ .
T Consensus 347 ia~~-~~-~~-i~~~Dl~~g~~~~lt~--------~~------~~~~~~-~sP---dG~-~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 347 LVMI-NG-DN-VVKQDLTSGSTEVLSS--------TF------LDESPS-ISP---NGI-MIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred EEEE-cC-CC-EEEEECCCCCeEEecC--------CC------CCCCce-ECC---CCC-EEEEEEcCCCceEEEEEECC
Confidence 7653 33 44 6669998887543222 11 113455 999 466 888888899888887632 2
Q ss_pred CcceeeeeccCCCeeEEEeecC
Q 024245 242 GIPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~s~~ 263 (270)
+.....+..|.+.+...+|+|-
T Consensus 405 G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEccCCCCCCCCcccCCC
Confidence 7788888888888999999984
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.5e-15 Score=104.78 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=141.9
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCC---------C-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---------H-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~---------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
..|.+-+++|.+++|++|+.+|.|.+..+++ + ..+-..++|. ++|+.++|.. .+|++++ ||.|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahd--gpiy~~~f~d----~~Lls~g-dG~V 83 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHD--GPIYYLAFHD----DFLLSGG-DGLV 83 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccC--CCeeeeeeeh----hheeecc-CceE
Confidence 4567778999999999999999999999864 1 2333446777 7799999986 6788776 4999
Q ss_pred EEEEccCCccCC--CCcc----ceec---ccceEEEEeeccCCcccee-cCCCCceEEEeccCceeeeccCCCCC----e
Q 024245 89 KCWDIENGGLSS--NPSL----TIKT---NSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDSLCDSK----D 154 (270)
Q Consensus 89 ~~wd~~~~~~~~--~~~~----~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 154 (270)
+-|..+...... +++. ..+. .-..+..+.++........ ...+....||+++++.. ..+.||.. +
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~-r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ-REYRGHTDYVHSV 162 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE-EEEcCCcceeeee
Confidence 999775432100 0111 1111 1122334455544433333 33445566888888654 47888888 3
Q ss_pred Ee-cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCC-CCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245 155 DV-PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS-PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (270)
Q Consensus 155 ~~-s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~ 232 (270)
.- +..++ ++ +|++||++||||+++++.+..+..+.-... ..| ....+.+++ -+. . +|++|+ ...
T Consensus 163 v~R~~~~q-il--sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~---~g~wigala-~~e-----d-WlvCGg-Gp~ 228 (325)
T KOG0649|consen 163 VGRNANGQ-IL--SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD---WGKWIGALA-VNE-----D-WLVCGG-GPK 228 (325)
T ss_pred eecccCcc-ee--ecCCCccEEEEeccccceeEEeccccChhhcCcc---cCceeEEEe-ccC-----c-eEEecC-CCc
Confidence 33 44454 33 799999999999999999988874321100 011 123455555 332 2 777776 458
Q ss_pred EEEEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245 233 ILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 233 i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g 264 (270)
+.+|.++. .++...+.- ..++..+.|..|-
T Consensus 229 lslwhLrs-se~t~vfpi-pa~v~~v~F~~d~ 258 (325)
T KOG0649|consen 229 LSLWHLRS-SESTCVFPI-PARVHLVDFVDDC 258 (325)
T ss_pred eeEEeccC-CCceEEEec-ccceeEeeeecce
Confidence 99999998 777777763 4566666666553
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.6e-14 Score=112.97 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=136.9
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEe-cCCCcEEEEeCCC-Cce--eEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQ-HRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
+.++++. +.+....++++|++++|+++ ..++.|.+|++.. ++. +.... .. .....++|+| ++++|++++.
T Consensus 26 ~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~--~~p~~i~~~~--~g~~l~v~~~ 99 (330)
T PRK11028 26 TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LP--GSPTHISTDH--QGRFLFSASY 99 (330)
T ss_pred eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CC--CCceEEEECC--CCCEEEEEEc
Confidence 3445554 34567789999999988765 4578899999973 332 22222 11 3467899999 9898887764
Q ss_pred -CCcEEEEEccCCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceee-------eccCCCCC--
Q 024245 85 -DGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-------TDSLCDSK-- 153 (270)
Q Consensus 85 -d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-- 153 (270)
++.|.+|++++..........+... ......++...............+.+|++.....+. ....+...
T Consensus 100 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~ 179 (330)
T PRK11028 100 NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH 179 (330)
T ss_pred CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCce
Confidence 8899999997533221111112111 112222222222222223334556778886633221 11112222
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCC--cc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe-c
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNT--AE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-Y 228 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~--~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~ 228 (270)
++|+|+|++++++ ...+++|.+||+.. ++ .+..+.. .+.. .........+. ++|+ |+ +|+++ .
T Consensus 180 ~~~~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~-----~p~~-~~~~~~~~~i~-~~pd---g~-~lyv~~~ 247 (330)
T PRK11028 180 MVFHPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLDM-----MPAD-FSDTRWAADIH-ITPD---GR-HLYACDR 247 (330)
T ss_pred EEECCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEec-----CCCc-CCCCccceeEE-ECCC---CC-EEEEecC
Confidence 9999999988764 44479999999973 22 2333321 0000 00111233466 8884 55 56655 4
Q ss_pred CCCcEEEEEcCCCCcceeeeecc---CCCeeEEEeecCCCce
Q 024245 229 EDGSILVWDIRNPGIPLTAMKVH---LEPGLECSMWRNPITM 267 (270)
Q Consensus 229 ~dg~i~vwd~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l 267 (270)
.++.|.+|++...+... ++.++ ......++|+|||++|
T Consensus 248 ~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~~l 288 (330)
T PRK11028 248 TASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGKYL 288 (330)
T ss_pred CCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCCEE
Confidence 57899999997633222 22222 1356789999999876
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.6e-15 Score=111.06 Aligned_cols=242 Identities=13% Similarity=0.202 Sum_probs=160.8
Q ss_pred CCccccccc-ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 8 PDPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 8 ~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
|+|++.... |...|.|++|....+++++|..+++|.+.|+++.+.+..+......+.|+.+..+| ..+.|++.+.++
T Consensus 94 ~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~ 171 (609)
T KOG4227|consen 94 PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAK 171 (609)
T ss_pred CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC--CCceEEEEecCc
Confidence 467776654 56899999999999999999999999999999998888876555446799999999 669999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceE--EEEeeccCCccceecCCCCceEEEeccCceeeeccCC-------CCC---e
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHF--CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-------DSK---D 154 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~ 154 (270)
.|.+||.+.......++. ....+..+ ..+.+............+...+||++..........+ ... +
T Consensus 172 ~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~ 250 (609)
T KOG4227|consen 172 LVSFIDNRDRQNPISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS 250 (609)
T ss_pred eEEEEeccCCCCCCceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence 999999987642221111 11122222 2222222223333444566788998876543322211 111 7
Q ss_pred EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC-C--CceeeeeeecCCCCCCCceEEEEecCCC
Q 024245 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK-G--RGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (270)
Q Consensus 155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~-~--~~~~~~~~~~~p~~~~g~~~l~~~~~dg 231 (270)
.|+|.|..+++.- ....-.+||+.+.++. .++. .|... . ...+-+++ |.- .+ .+++|+.+-
T Consensus 251 ~~~~~G~Q~msiR--R~~~P~~~D~~S~R~~-V~k~-------D~N~~GY~N~~T~KS~~-F~~----D~-~v~tGSD~~ 314 (609)
T KOG4227|consen 251 LWSPSGNQFMSIR--RGKCPLYFDFISQRCF-VLKS-------DHNPNGYCNIKTIKSMT-FID----DY-TVATGSDHW 314 (609)
T ss_pred eeCCCCCeehhhh--ccCCCEEeeeecccce-eEec-------cCCCCcceeeeeeeeee-eec----ce-eeeccCccc
Confidence 8999999887532 2344567888764432 2332 23221 1 11222344 653 33 799999999
Q ss_pred cEEEEEcCCC----C------------------cceeeeeccCCCeeEEEeecCCCcee
Q 024245 232 SILVWDIRNP----G------------------IPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 232 ~i~vwd~~~~----~------------------~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.|++|.+... + ..+..+++|..-++.+.|+|...+|.
T Consensus 315 ~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~ 373 (609)
T KOG4227|consen 315 GIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLV 373 (609)
T ss_pred ceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEe
Confidence 9999987531 1 23567889999999999999877664
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=9.2e-16 Score=110.18 Aligned_cols=211 Identities=13% Similarity=0.178 Sum_probs=139.9
Q ss_pred EEEEec----CCCcEEEEeCCCC--cee-EEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-------CcEEEEEccCCc
Q 024245 32 ILFAGT----TGGELRIWDTVQH--RTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-------GTVKCWDIENGG 97 (270)
Q Consensus 32 ~l~s~~----~dg~i~vwd~~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~ 97 (270)
.+++|. .|+.|.+-++..+ +.. +.|..+. +.|..++-+|. +...|+++..+ ..+.||.+....
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~a--gEvw~las~P~-d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~ 104 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHA--GEVWDLASSPF-DQRILATVYNDTSDSGVLTGAAIWQIPEPL 104 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCC--cceehhhcCCC-CCceEEEEEeccCCCcceeeEEEEeccccc
Confidence 444554 3677888777653 222 2344455 55999999996 54667766442 247799986543
Q ss_pred cCC-----CCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC-----CCCC----eEecC--CC
Q 024245 98 LSS-----NPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL-----CDSK----DDVPA--EG 160 (270)
Q Consensus 98 ~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~s~--~~ 160 (270)
... +.+..+... -....++...+............+.+|++.....+...+. ++.. -+|+| +|
T Consensus 105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 105 GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 210 111222211 1233444444444555555677778888877665322111 1111 67888 45
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
. .+++++ |+++..||+|+.++...+.. +|. ..+..+. |+|+ .+.+|++|+.||.|++||.++
T Consensus 185 n-qv~tt~--d~tl~~~D~RT~~~~~sI~d-------AHg----q~vrdlD-fNpn---kq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 185 N-QVATTS--DSTLQFWDLRTMKKNNSIED-------AHG----QRVRDLD-FNPN---KQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred c-eEEEeC--CCcEEEEEccchhhhcchhh-------hhc----ceeeecc-CCCC---ceEEEEEcCCCccEEEEeccC
Confidence 4 344333 79999999999998888886 553 3677787 9994 555999999999999999999
Q ss_pred CCcceeeeeccCCCeeEEEeecC
Q 024245 241 PGIPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~s~~ 263 (270)
...++..+.+|..+|+++.|+|.
T Consensus 247 tk~pv~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 247 TKFPVQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred CCccccccCCCceEEEEEEecCc
Confidence 89999999999999999999994
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.5e-16 Score=115.91 Aligned_cols=199 Identities=15% Similarity=0.101 Sum_probs=137.2
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC------CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
+.+-+.+|.+.|+++.|+.++++|++|+.|..+++|+++. .++++. .+|.+...|.|++|.. ...++++|.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~~~H~SNIF~L~F~~--~N~~~~SG~ 124 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-MEHPHRSNIFSLEFDL--ENRFLYSGE 124 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-ccCccccceEEEEEcc--CCeeEecCC
Confidence 4455789999999999999999999999999999999864 345543 3444447799999998 778899999
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 163 (270)
.+++|..-|+++.+.+. .+........... +..+|... .
T Consensus 125 ~~~~VI~HDiEt~qsi~----V~~~~~~~~~VY~------------------------------------m~~~P~DN-~ 163 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIY----VANENNNRGDVYH------------------------------------MDQHPTDN-T 163 (609)
T ss_pred CcceeEeeecccceeee----eecccCcccceee------------------------------------cccCCCCc-e
Confidence 99999999999875432 1111110000000 33566654 4
Q ss_pred EEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 164 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
++ +.+.++.|.+||.+... .+..+.. +. .......+. |+|..+ + +|++.++.+-+.+||.+.+.
T Consensus 164 ~~-~~t~~~~V~~~D~Rd~~~~~~~~~~-------AN---~~~~F~t~~-F~P~~P--~-Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 164 LI-VVTRAKLVSFIDNRDRQNPISLVLP-------AN---SGKNFYTAE-FHPETP--A-LILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred EE-EEecCceEEEEeccCCCCCCceeee-------cC---CCccceeee-ecCCCc--e-eEEeccccCCCCceeecccc
Confidence 44 34568999999998765 3332221 11 222344555 999744 3 89999999999999999876
Q ss_pred cceeeeeccCC------CeeEEEeecCCCce
Q 024245 243 IPLTAMKVHLE------PGLECSMWRNPITM 267 (270)
Q Consensus 243 ~~~~~~~~~~~------~v~~~~~s~~g~~l 267 (270)
.++....+..+ .-.++.|+|+|..+
T Consensus 229 ~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 229 RPVYQRSMFKGLPQENTEWMGSLWSPSGNQF 259 (609)
T ss_pred chHHhhhccccCcccchhhhheeeCCCCCee
Confidence 66554443321 22568899998765
No 176
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=1.1e-15 Score=111.08 Aligned_cols=195 Identities=12% Similarity=0.160 Sum_probs=139.3
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC---ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
.+.--.++|+|.+|++|+..+|.+-....|.||..... +..+++..|. ..|+.|.|+| ..+.|++++.|..-.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd--~~vtgvdWap--~snrIvtcs~drnay 80 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD--KIVTGVDWAP--KSNRIVTCSHDRNAY 80 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC--cceeEEeecC--CCCceeEccCCCCcc
Confidence 34445679999999999999999999999999998764 4677888888 6699999999 889999999999999
Q ss_pred EEEcc-CCccCCCCccceec-ccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245 90 CWDIE-NGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (270)
Q Consensus 90 ~wd~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 167 (270)
+|... .++... .+.+-. +....+ +.|+|.+..+. +
T Consensus 81 Vw~~~~~~~Wkp--tlvLlRiNrAAt~---------------------------------------V~WsP~enkFA--V 117 (361)
T KOG1523|consen 81 VWTQPSGGTWKP--TLVLLRINRAATC---------------------------------------VKWSPKENKFA--V 117 (361)
T ss_pred ccccCCCCeecc--ceeEEEeccceee---------------------------------------EeecCcCceEE--e
Confidence 99984 443322 222111 111111 56999987655 4
Q ss_pred cCCCceEEEEeCCCcceeeeeccCcCCCCCCcc-cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc-----CCC
Q 024245 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS-SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI-----RNP 241 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~-~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~-----~~~ 241 (270)
|+....|.||-++..+--..-+ |. .+++..+.++. |+|+ +- +|++|+.|+..+++.. +..
T Consensus 118 gSgar~isVcy~E~ENdWWVsK---------hikkPirStv~sld-Whpn---nV-LlaaGs~D~k~rVfSayIK~Vdek 183 (361)
T KOG1523|consen 118 GSGARLISVCYYEQENDWWVSK---------HIKKPIRSTVTSLD-WHPN---NV-LLAAGSTDGKCRVFSAYIKGVDEK 183 (361)
T ss_pred ccCccEEEEEEEecccceehhh---------hhCCccccceeeee-ccCC---cc-eecccccCcceeEEEEeeeccccC
Confidence 5556889998877544221111 11 23577899998 9995 33 9999999999999853 210
Q ss_pred ------------CcceeeeeccCCCeeEEEeecCCCcee
Q 024245 242 ------------GIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 242 ------------~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
++.+..+....+.|..+.|+|+|..|.
T Consensus 184 pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 184 PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 223444444567899999999998874
No 177
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.8e-15 Score=114.95 Aligned_cols=205 Identities=8% Similarity=0.119 Sum_probs=149.8
Q ss_pred cccccccc-ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 11 VAVLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 11 ~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
+..+.|++ ..+.....+|++++|+..+..|.|.+-...+++.+..++.. +.|..++|+. ++..|++++.+|.|.
T Consensus 295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsS--dsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---GVVSDFTFSS--DSKELLASGGTGEVY 369 (514)
T ss_pred ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec---cEEeeEEEec--CCcEEEEEcCCceEE
Confidence 34444554 46778889999999999999999999999999999988866 6699999998 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeee--------cc----CCCCCeEec
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT--------DS----LCDSKDDVP 157 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~s 157 (270)
+||++...++. .+... ......+++.+.....++.|+..+++++...+.... .+ .+-..+.|+
T Consensus 370 v~nl~~~~~~~----rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 370 VWNLRQNSCLH----RFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred EEecCCcceEE----EEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 99999986654 22221 122233444444455667776666666655332211 11 111118999
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
++++.|.+++...+..+++-.+.+......++. - +..-+.+.+++ |+|.+. +|+.|..+|.|.+|.
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~--------~-n~~vg~vtc~a-FSP~sG----~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPT--------S-NTKVGHVTCMA-FSPNSG----YLAVGNEAGRVHLFK 510 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCC--------C-CCcccceEEEE-ecCCCc----eEEeecCCCceeeEe
Confidence 999877776666788999999988777766663 1 33456788998 999633 999999999999998
Q ss_pred cC
Q 024245 238 IR 239 (270)
Q Consensus 238 ~~ 239 (270)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 75
No 178
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=9.6e-16 Score=114.67 Aligned_cols=170 Identities=17% Similarity=0.186 Sum_probs=122.6
Q ss_pred cccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCc---------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR---------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 18 ~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
..+|..+.|.++.. .++||+.|..|++|.++.+. -...+..|. ..|+++.|+| +|++|+||+.+|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~--~aVN~vRf~p--~gelLASg~D~g~ 88 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT--RAVNVVRFSP--DGELLASGGDGGE 88 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc--ceeEEEEEcC--CcCeeeecCCCce
Confidence 46899999999766 99999999999999986542 223456677 5599999999 9999999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
|.+|....-. +..... ... .. .....+...+.+|.. ++|+|++..+
T Consensus 89 v~lWk~~~~~-----~~~~d~-e~~-----~~-------------------ke~w~v~k~lr~h~~diydL~Ws~d~~~l 138 (434)
T KOG1009|consen 89 VFLWKQGDVR-----IFDADT-EAD-----LN-------------------KEKWVVKKVLRGHRDDIYDLAWSPDSNFL 138 (434)
T ss_pred EEEEEecCcC-----Cccccc-hhh-----hC-------------------ccceEEEEEecccccchhhhhccCCCcee
Confidence 9999876411 110000 000 00 001123334455555 8999999755
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+ +++.|.++++||+..|+....+. .|.. .+..++ |.|- ++ ++++-+.|...+.+.+..
T Consensus 139 ~--s~s~dns~~l~Dv~~G~l~~~~~--------dh~~----yvqgva-wDpl---~q-yv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 139 V--SGSVDNSVRLWDVHAGQLLAILD--------DHEH----YVQGVA-WDPL---NQ-YVASKSSDRHPEGFSAKL 196 (434)
T ss_pred e--eeeccceEEEEEeccceeEeecc--------cccc----ccceee-cchh---hh-hhhhhccCcccceeeeee
Confidence 4 67789999999999999998887 5643 555565 8885 34 889888888777776654
No 179
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.3e-15 Score=110.81 Aligned_cols=189 Identities=11% Similarity=0.108 Sum_probs=117.3
Q ss_pred EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC-CC-ccceecccceEEEEeeccCCccceecCCCC
Q 024245 55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS-NP-SLTIKTNSYHFCKLSLVKEPYANAKQANEP 132 (270)
Q Consensus 55 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (270)
.+++|. +.|++++|+. +|+.|++++.|++|++|+++.-.... +. ...++........++.+..........+..
T Consensus 81 ~LKgH~--~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 81 VLKGHK--KEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhccC--CceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 567888 5599999999 99999999999999999997633211 00 011122222223344444333344444444
Q ss_pred ceEEEeccCce---ee-ec------c-CCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCC
Q 024245 133 KDCYEREVGET---VD-TD------S-LCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197 (270)
Q Consensus 133 ~~~~~~~~~~~---~~-~~------~-~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 197 (270)
...|.+...+. .. .. + ..|.. +...-.+. ++ .+++.|..|.||+++ |+.+..+..
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~i-msas~dt~i~lw~lk-Gq~L~~idt------- 226 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YI-MSASLDTKICLWDLK-GQLLQSIDT------- 226 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EE-EEecCCCcEEEEecC-Cceeeeecc-------
Confidence 45554332211 00 00 0 11111 23333443 33 367789999999999 888888773
Q ss_pred CcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC--C-----cceeeeeccCCCeeEEEeecCCCce
Q 024245 198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP--G-----IPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 198 ~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~--~-----~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
. ...-... +.+| +|+ ++++++..-.|++|..--. + ..+..++||++.|+.++||++...+
T Consensus 227 -n----q~~n~~a-avSP---~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~ 293 (420)
T KOG2096|consen 227 -N----QSSNYDA-AVSP---DGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRA 293 (420)
T ss_pred -c----cccccce-eeCC---CCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCccee
Confidence 1 1112222 4888 577 9999999999999986321 1 2567789999999999999987664
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=1.9e-14 Score=106.64 Aligned_cols=219 Identities=13% Similarity=0.137 Sum_probs=149.2
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccC
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIEN 95 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~ 95 (270)
...+..+.|+.+...|..|+.|| .++++.+............ ..|.-+-|+. .+++..+.+. .+++.+.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~--~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEG--VSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCC--eEEEEeeccc----ceeEEEecCCCceEEEEEccc
Confidence 45677788999999999999998 8888887644322222122 4466777776 5766555544 488888887
Q ss_pred CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC--CCC--eEecCCCC--eEEEEecC
Q 024245 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC--DSK--DDVPAEGP--KYMAVAGE 169 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~s~~~~--~~~~~~~~ 169 (270)
+..+. ........+++..........-.....++|+.+-+.+...... +.. ++++++.. ++..-...
T Consensus 78 ~~~IC-------e~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 78 KTTIC-------EIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred CceEE-------EEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence 65433 1111112222222333333333444788899888877654444 222 67776543 55543444
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc-EEEEEcCCCCcceeee
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAM 248 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~-i~vwd~~~~~~~~~~~ 248 (270)
..|.|.|||+.+-+.+..+. .| .+.+-+++ |+|+ |. +|||+++.|+ |||+.+.+ ++.+..|
T Consensus 151 t~GdV~l~d~~nl~~v~~I~--------aH----~~~lAala-fs~~---G~-llATASeKGTVIRVf~v~~-G~kl~eF 212 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTIN--------AH----KGPLAALA-FSPD---GT-LLATASEKGTVIRVFSVPE-GQKLYEF 212 (391)
T ss_pred CCceEEEEEcccceeeeEEE--------ec----CCceeEEE-ECCC---CC-EEEEeccCceEEEEEEcCC-ccEeeee
Confidence 56899999999999999998 67 45677887 9995 55 9999999997 89999999 8888877
Q ss_pred eccC--CCeeEEEeecCCCcee
Q 024245 249 KVHL--EPGLECSMWRNPITMS 268 (270)
Q Consensus 249 ~~~~--~~v~~~~~s~~g~~ls 268 (270)
..-. ..|.+++|+||+++|.
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEE
Confidence 6422 4678999999999986
No 181
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=2.5e-15 Score=116.44 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=129.9
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCceeEEEe--ecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccc
Q 024245 28 QTKPILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT 105 (270)
Q Consensus 28 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 105 (270)
+.+--|..|-.-|.|++.|....+..+.+. .+..+..|+++.|-|- +...++.+-.+|.+.+||.+-..-...|...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeC-CCceEEEEEecCceEEeeccccccCCCCccc
Confidence 345567777778889998876532222121 1222266999999995 3356677788999999988432222222222
Q ss_pred eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245 106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185 (270)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 185 (270)
.......+........ ........|.+..+. -...+|+|||++|. +-+.||.+||||..+.+++
T Consensus 262 ~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~--------in~f~FS~DG~~LA--~VSqDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSK------KTRNPVARWHIGEGS--------INEFAFSPDGKYLA--TVSQDGFLRIFDFDTQELL 325 (636)
T ss_pred ccCCCCeeEEeeeecc------ccCCccceeEecccc--------ccceeEcCCCceEE--EEecCceEEEeeccHHHHH
Confidence 2222111111110000 000112222222221 11188999998665 4457999999999998887
Q ss_pred eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
..++. .-+..++++ |+| ||+ ||++|++|..|.||.+.. ++.+..-++|+++|..++|.|
T Consensus 326 g~mkS------------YFGGLLCvc-WSP---DGK-yIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 326 GVMKS------------YFGGLLCVC-WSP---DGK-YIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHh------------hccceEEEE-EcC---Ccc-EEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecc
Confidence 77662 245678887 999 566 999999999999999998 899999999999999999996
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=3.2e-15 Score=118.96 Aligned_cols=207 Identities=14% Similarity=0.172 Sum_probs=126.3
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--------eeEEE----------------------
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--------TVSSS---------------------- 56 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~---------------------- 56 (270)
-...+++++||++.|+|++|+.||+.+|+|+.|..|.+|+.+-.- .++..
T Consensus 42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~ 121 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSP 121 (1081)
T ss_pred CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccCh
Confidence 345789999999999999999999999999999999999865311 11111
Q ss_pred -----eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceec---
Q 024245 57 -----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ--- 128 (270)
Q Consensus 57 -----~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (270)
..+.....|.+.+|.. ||++|+-|-.+|+|.+-+-...... ...-++. .....+++.+.+......
T Consensus 122 ~qK~V~K~kss~R~~~CsWtn--DGqylalG~~nGTIsiRNk~gEek~---~I~Rpgg-~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 122 EQKSVSKHKSSSRIICCSWTN--DGQYLALGMFNGTISIRNKNGEEKV---KIERPGG-SNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred hhhhHHhhhhheeEEEeeecC--CCcEEEEeccCceEEeecCCCCcce---EEeCCCC-CCCCceEEEecCCCCCCccce
Confidence 0011113466666666 8999999999999988754432211 1111111 111223333322221000
Q ss_pred -----CCCCceEEEeccCceee-eccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcc
Q 024245 129 -----ANEPKDCYEREVGETVD-TDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS 200 (270)
Q Consensus 129 -----~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~ 200 (270)
.+....++.+ .++.+. ..-.+-.. +.+.++|+++++ |+.|+.+++|-. .|-.+.++..
T Consensus 196 ~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~Li--GGsdk~L~~fTR-~GvrLGTvg~---------- 261 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILL--GGSDKQLSLFTR-DGVRLGTVGE---------- 261 (1081)
T ss_pred EEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEE--ccCCCceEEEee-cCeEEeeccc----------
Confidence 0000111111 111111 11111122 677799998885 555899999964 4666666542
Q ss_pred cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 201 ~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
...++|.++ ..| +++ +++.|+.||+|-.|++-.
T Consensus 262 --~D~WIWtV~-~~P---NsQ-~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 262 --QDSWIWTVQ-AKP---NSQ-YVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred --cceeEEEEE-Ecc---CCc-eEEEEEccCeeehhhhHH
Confidence 456899998 999 466 999999999999998753
No 183
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.4e-14 Score=113.70 Aligned_cols=223 Identities=14% Similarity=0.146 Sum_probs=159.7
Q ss_pred cccccc-cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 12 AVLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 12 ~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
..+.|+ ...|.+++|++.+ .|++.+.+|.|.-||+.+++.+..+.... +.|++++.+| .+..++.|+.||.+..
T Consensus 62 ~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~g--g~IWsiai~p--~~~~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNG--GAIWSIAINP--ENTILAIGCDDGVLYD 136 (691)
T ss_pred EEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCC--cceeEEEeCC--ccceEEeecCCceEEE
Confidence 445555 4689999999655 67788889999999999999999888777 6699999999 8789999999998888
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCC---ceEEEeccCceeee------ccCCCCC-eEec---
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDT------DSLCDSK-DDVP--- 157 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~-~~~s--- 157 (270)
++...+++.. ...-.......+++.+.+...-+..|+. +.+||...+..+.. .+..... +.|+
T Consensus 137 ~s~~p~~I~~----~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~ 212 (691)
T KOG2048|consen 137 FSIGPDKITY----KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLF 212 (691)
T ss_pred EecCCceEEE----EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEE
Confidence 8887776532 1111122345577777777764444444 55688887776551 1111122 4443
Q ss_pred -CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 158 -AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 158 -~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
.++. ++ +|..-|+|++||...+.+++.+. .| ...+.+++ -.+++ . ++++++.|+.|..+
T Consensus 213 Lrd~t--I~-sgDS~G~V~FWd~~~gTLiqS~~--------~h----~adVl~La-v~~~~---d-~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 213 LRDST--IA-SGDSAGTVTFWDSIFGTLIQSHS--------CH----DADVLALA-VADNE---D-RVFSAGVDPKIIQY 272 (691)
T ss_pred eecCc--EE-EecCCceEEEEcccCcchhhhhh--------hh----hcceeEEE-EcCCC---C-eEEEccCCCceEEE
Confidence 5553 33 78888999999999999999888 56 34577776 66643 3 89999999999999
Q ss_pred EcCCCCc---ceeeeeccCCCeeEEEeecC
Q 024245 237 DIRNPGI---PLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 237 d~~~~~~---~~~~~~~~~~~v~~~~~s~~ 263 (270)
...+.+. .......|...|.+++..++
T Consensus 273 ~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 273 SLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred EecCCccceeeeccccCCcccceeeeeecc
Confidence 8877433 22233467778888888776
No 184
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.68 E-value=3.5e-15 Score=113.32 Aligned_cols=234 Identities=11% Similarity=0.089 Sum_probs=151.7
Q ss_pred cccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
-+..+..|..+|.+|.|+| +...+++.|+||+|++-|+++...-..+........+..+.|+. +...++.+..=|.+
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGNF 303 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC--CCccEEEeecccce
Confidence 4566778999999999999 55689999999999999999764433333323335577888887 65667777766799
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceee---eccCCCCC----eEecCC
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVD---TDSLCDSK----DDVPAE 159 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~s~~ 159 (270)
.+||.+++.... ..+.-+...++.+.+..... ...........+||++.-.... .....|.. ..|||.
T Consensus 304 ~~iD~R~~~s~~---~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs 380 (498)
T KOG4328|consen 304 NVIDLRTDGSEY---ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS 380 (498)
T ss_pred EEEEeecCCccc---hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC
Confidence 999999876422 12222222333333333222 2233334455679987654333 22334444 889999
Q ss_pred CCeEEEEecCCCceEEEEeCC----CcceeeeeccCcCCCCCCcccCC--CceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 160 GPKYMAVAGEQLSEVEIWDLN----TAERCTRLHQNSCGGSPNFSSKG--RGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
+..+ + +.+.|..|+|||.. .-.+..++. |.... .-...... |.|+.+ ++++|..-..|
T Consensus 381 ~gtl-~-TT~~D~~IRv~dss~~sa~~~p~~~I~---------Hn~~t~RwlT~fKA~-W~P~~~----li~vg~~~r~I 444 (498)
T KOG4328|consen 381 GGTL-L-TTCQDNEIRVFDSSCISAKDEPLGTIP---------HNNRTGRWLTPFKAA-WDPDYN----LIVVGRYPRPI 444 (498)
T ss_pred CCce-E-eeccCCceEEeecccccccCCccceee---------ccCcccccccchhhe-eCCCcc----EEEEeccCcce
Confidence 9884 4 45569999999983 334455554 33221 22233444 999644 99999999999
Q ss_pred EEEEcCCCCcceeeeeccC-CCeeE-EEeecCCC
Q 024245 234 LVWDIRNPGIPLTAMKVHL-EPGLE-CSMWRNPI 265 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~~~~~-~~v~~-~~~s~~g~ 265 (270)
-|+|-.. ++.+..+.... ..|.+ ..|+|-+.
T Consensus 445 Dv~~~~~-~q~v~el~~P~~~tI~~vn~~HP~~~ 477 (498)
T KOG4328|consen 445 DVFDGNG-GQMVCELHDPESSTIPSVNEFHPMRD 477 (498)
T ss_pred eEEcCCC-CEEeeeccCccccccccceeeccccc
Confidence 9999887 77666654433 24554 57888665
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.2e-14 Score=99.01 Aligned_cols=224 Identities=14% Similarity=0.209 Sum_probs=148.5
Q ss_pred CCCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce------eEE--EeecCC---CcceEEEEEee
Q 024245 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT------VSS--SWVHSA---AHGIVSVATGP 72 (270)
Q Consensus 4 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~------~~~--~~~~~~---~~~v~~~~~~~ 72 (270)
.|+...++...++|.++|+.++|. ..+|++|+ ||.|+=|....... +.. ...+.. --.|+++...|
T Consensus 48 ~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 48 EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc
Confidence 444456777789999999999998 34777776 49999998764321 111 111110 02388999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEee-ccCCccceecCCCCceEEEeccCceeeeccC--
Q 024245 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-VKEPYANAKQANEPKDCYEREVGETVDTDSL-- 149 (270)
Q Consensus 73 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (270)
..+-++.++.|+.+..||+++|+..+ .++++....-++.. ...+........+..++||.++.+.+...-.
T Consensus 125 --~enSi~~AgGD~~~y~~dlE~G~i~r----~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 125 --SENSILFAGGDGVIYQVDLEDGRIQR----EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred --CCCcEEEecCCeEEEEEEecCCEEEE----EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc
Confidence 66677777799999999999998765 67777665544433 3344445555677788999999887654322
Q ss_pred ------CCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245 150 ------CDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220 (270)
Q Consensus 150 ------~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g 220 (270)
.|.. .++.-+...++ +|. ...+.+|.+++.++...|. +...+-.+. |.-+
T Consensus 199 ~~~~lRp~~g~wigala~~edWlv--CGg-Gp~lslwhLrsse~t~vfp-------------ipa~v~~v~-F~~d---- 257 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAVNEDWLV--CGG-GPKLSLWHLRSSESTCVFP-------------IPARVHLVD-FVDD---- 257 (325)
T ss_pred ChhhcCcccCceeEEEeccCceEE--ecC-CCceeEEeccCCCceEEEe-------------cccceeEee-eecc----
Confidence 1111 45555666554 554 5789999999999988887 233455555 7643
Q ss_pred ceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEee
Q 024245 221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMW 261 (270)
Q Consensus 221 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s 261 (270)
.++++++.+.|.-|.+. +......++.+...++..|+
T Consensus 258 --~vl~~G~g~~v~~~~l~--Gvl~a~ip~~s~~c~s~s~~ 294 (325)
T KOG0649|consen 258 --CVLIGGEGNHVQSYTLN--GVLQANIPVESTACYSASWQ 294 (325)
T ss_pred --eEEEeccccceeeeeec--cEEEEeccCCccceeeeccc
Confidence 78888888899999876 44433344333344444444
No 186
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=1.3e-15 Score=120.41 Aligned_cols=184 Identities=16% Similarity=0.239 Sum_probs=126.1
Q ss_pred eCCCCEEEE--ecCCCcEEEEeCCCC-cee-EEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC--
Q 024245 27 HQTKPILFA--GTTGGELRIWDTVQH-RTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS-- 100 (270)
Q Consensus 27 s~~~~~l~s--~~~dg~i~vwd~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-- 100 (270)
+.+..++|. ++.-|.|-||+++.. +.- ..+.+-.....|+.+.|.|+ |...|+.++.||.|++|.+..+....
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCccc
Confidence 334445544 455789999999753 211 11111111155999999998 55899999999999999998765432
Q ss_pred -CCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeC
Q 024245 101 -NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (270)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~ 179 (270)
.|...+..+...++. +.|+|-...+++ ++++|-+|+|||+
T Consensus 667 ~tPe~~lt~h~eKI~s--------------------------------------lRfHPLAadvLa-~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITS--------------------------------------LRFHPLAADVLA-VASYDSTIELWDL 707 (1012)
T ss_pred CCcceeeecccceEEE--------------------------------------EEecchhhhHhh-hhhccceeeeeeh
Confidence 111111122111111 447776666666 5678999999999
Q ss_pred CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCC-CeeEE
Q 024245 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PGLEC 258 (270)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~ 258 (270)
++++....+. ||. +.+..++ |+| +|+ .+++.+.||+|++|+-+...++++.-++..+ .--.|
T Consensus 708 ~~~~~~~~l~--------gHt----dqIf~~A-WSp---dGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi 770 (1012)
T KOG1445|consen 708 ANAKLYSRLV--------GHT----DQIFGIA-WSP---DGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARI 770 (1012)
T ss_pred hhhhhhheec--------cCc----CceeEEE-ECC---CCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeE
Confidence 9999988898 784 4688888 999 577 9999999999999999987777766554332 22346
Q ss_pred EeecCCCce
Q 024245 259 SMWRNPITM 267 (270)
Q Consensus 259 ~~s~~g~~l 267 (270)
.|--||++|
T Consensus 771 ~wacdgr~v 779 (1012)
T KOG1445|consen 771 LWACDGRIV 779 (1012)
T ss_pred EEEecCcEE
Confidence 677777765
No 187
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.66 E-value=1.4e-14 Score=105.92 Aligned_cols=169 Identities=12% Similarity=0.184 Sum_probs=123.4
Q ss_pred cccccccEEEEEEeC-----CCCEEEEecCCCcEEEEeCCCCc---eeEEEeecCCCcceEEEEEeeCCC--CCEEEEEe
Q 024245 14 LRGHRASVTDVCFHQ-----TKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIG--LNKVISQG 83 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~-----~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~ 83 (270)
..+|..+|..++|++ +...+|+++. ..+.+|.....- .++.+.....+.....++|+-..+ .-+++.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 456889999999995 2235666665 469999876543 344444333336678888875211 23788888
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 163 (270)
.-|.|+|.|+.++++.. .+.++...+.. +.+.|+..++
T Consensus 113 ~~GvIrVid~~~~~~~~----~~~ghG~sINe--------------------------------------ik~~p~~~ql 150 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSK----NYRGHGGSINE--------------------------------------IKFHPDRPQL 150 (385)
T ss_pred ceeEEEEEecchhhhcc----ceeccCccchh--------------------------------------hhcCCCCCcE
Confidence 99999999999887654 33333222211 4577888877
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
++ +++.|.+|++|++++..++..|-+.. || ++.+.++. |+++ |. +|++++.|.+|++|++..
T Consensus 151 vl-s~SkD~svRlwnI~~~~Cv~VfGG~e-----gH----rdeVLSvD-~~~~---gd-~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 151 VL-SASKDHSVRLWNIQTDVCVAVFGGVE-----GH----RDEVLSVD-FSLD---GD-RIASCGMDHSLKLWRLNV 212 (385)
T ss_pred EE-EecCCceEEEEeccCCeEEEEecccc-----cc----cCcEEEEE-EcCC---CC-eeeccCCcceEEEEecCh
Confidence 76 78889999999999999999987322 55 56899998 9984 55 999999999999999984
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=3.4e-14 Score=101.57 Aligned_cols=158 Identities=16% Similarity=0.268 Sum_probs=103.1
Q ss_pred EEEEEeCCCCEEEEecC----------CCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEE--EeCCCcE
Q 024245 22 TDVCFHQTKPILFAGTT----------GGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS--QGRDGTV 88 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~----------dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~d~~i 88 (270)
..+.|+++|.+|+.-.. -+...+|.++. +.....+..... ++|.+++|+| +|+.|+. |..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~-~~I~~~~WsP--~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE-GPIHDVAWSP--NGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC-CceEEEEECc--CCCEEEEEEccCCccc
Confidence 46889999987655322 23455666532 344555544332 4699999999 8888754 4467799
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe-
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA- 167 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~- 167 (270)
.+||++.. ++..+....... +.|+|+|++++++.
T Consensus 86 ~lyd~~~~-----~i~~~~~~~~n~----------------------------------------i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 86 TLYDVKGK-----KIFSFGTQPRNT----------------------------------------ISWSPDGRFLVLAGF 120 (194)
T ss_pred EEEcCccc-----EeEeecCCCceE----------------------------------------EEECCCCCEEEEEEc
Confidence 99999622 122332211110 56999998777632
Q ss_pred cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC------CCcEEEEEcCCC
Q 024245 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVWDIRNP 241 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~------dg~i~vwd~~~~ 241 (270)
+...|.|.+||.++.+.+.+.+ | ..+..+. |+| +|+ +|+++.. |+.++||+..
T Consensus 121 ~n~~G~l~~wd~~~~~~i~~~~---------~-----~~~t~~~-WsP---dGr-~~~ta~t~~r~~~dng~~Iw~~~-- 179 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKISTFE---------H-----SDATDVE-WSP---DGR-YLATATTSPRLRVDNGFKIWSFQ-- 179 (194)
T ss_pred cCCCcEEEEEECCCCEEeeccc---------c-----CcEEEEE-EcC---CCC-EEEEEEeccceeccccEEEEEec--
Confidence 2335789999999888887766 2 2356776 999 566 7777653 7889999986
Q ss_pred Ccceeee
Q 024245 242 GIPLTAM 248 (270)
Q Consensus 242 ~~~~~~~ 248 (270)
|+.+...
T Consensus 180 G~~l~~~ 186 (194)
T PF08662_consen 180 GRLLYKK 186 (194)
T ss_pred CeEeEec
Confidence 5554443
No 189
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=1.4e-14 Score=122.23 Aligned_cols=198 Identities=16% Similarity=0.283 Sum_probs=134.3
Q ss_pred cccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCCCCEEEE
Q 024245 10 PVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (270)
.+..+..|+..|..++.++. +.+++|||.||+|++||..+- +...++.... .++.++.+.+ +++.++.
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~--sr~~~vt~~~--~~~~~Av 1115 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG--SRVEKVTMCG--NGDQFAV 1115 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC--CceEEEEecc--CCCeEEE
Confidence 67888889999999999885 489999999999999998641 2222333233 6699999999 8899999
Q ss_pred EeCCCcEEEEEccCCccCCCCccce--ecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecC-
Q 024245 82 QGRDGTVKCWDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA- 158 (270)
Q Consensus 82 ~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 158 (270)
++.||.|++.+++............ ..........++ -+|..
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m-----------------------------------~a~~~~ 1160 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM-----------------------------------HAFTAI 1160 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEe-----------------------------------eccccc
Confidence 9999999999987632111000000 000000000000 01111
Q ss_pred CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
.+..++++ +...+.|..||+++.....+++. ....+.+++++ .+|.+. +++.|...|.+.+||+
T Consensus 1161 ~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~----------~~~hG~vTSi~-idp~~~----WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1161 VQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKN----------QLRHGLVTSIV-IDPWCN----WLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred ccceeEEE-EEeccceEEecchhhhhHHhhhc----------CccccceeEEE-ecCCce----EEEEecCCceEEEEEe
Confidence 12223333 34568899999999887777763 22467888888 888533 9999999999999999
Q ss_pred CCCCcceeeee-ccCCCeeEEEeecC
Q 024245 239 RNPGIPLTAMK-VHLEPGLECSMWRN 263 (270)
Q Consensus 239 ~~~~~~~~~~~-~~~~~v~~~~~s~~ 263 (270)
+- +.++..+. .+..+|+.+..+|-
T Consensus 1225 RF-~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1225 RF-RVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred ec-CceeecccCcccCCcceEEeecc
Confidence 98 77777665 33467777777664
No 190
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=2.5e-15 Score=118.90 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=122.8
Q ss_pred CcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+...+.+|...|+++.|+| ....|+++++|.+|++||+.+.+....+.+|. +.|..++|+| +|+.+++.+.||+
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt--dqIf~~AWSp--dGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT--DQIFGIAWSP--DGRRIATVCKDGT 743 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc--CceeEEEECC--CCcceeeeecCce
Confidence 46678899999999999999 66799999999999999999999999999999 6699999999 9999999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 167 (270)
|++|+.++++. ++..-++... ..... +.|..+|+++++ +
T Consensus 744 ~rVy~Prs~e~---pv~Eg~gpvg-tRgAR------------------------------------i~wacdgr~viv-~ 782 (1012)
T KOG1445|consen 744 LRVYEPRSREQ---PVYEGKGPVG-TRGAR------------------------------------ILWACDGRIVIV-V 782 (1012)
T ss_pred EEEeCCCCCCC---ccccCCCCcc-Cccee------------------------------------EEEEecCcEEEE-e
Confidence 99999988752 2222221111 10000 447778876664 5
Q ss_pred cCC---CceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 168 GEQ---LSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 168 ~~~---d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
|.+ ...|.+||..+-. .+++.... ......-- .|.++ ...++++|-.|..|++|.+-.
T Consensus 783 Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD-----------vaps~LvP-~YD~D---s~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 783 GFDKSSERQVQMYDAQTLDLRPLYTQVLD-----------VAPSPLVP-HYDYD---SNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred cccccchhhhhhhhhhhccCCcceeeeec-----------ccCccccc-cccCC---CceEEEecCCCceEEEEEecC
Confidence 542 3467888876432 33333210 01111111 14443 335899999999999999876
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=7.8e-13 Score=106.64 Aligned_cols=228 Identities=21% Similarity=0.388 Sum_probs=157.4
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEE-eeCCCCC-EEEEEeC-CCcE
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT-GPSIGLN-KVISQGR-DGTV 88 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~-~~~~~~~-~l~s~~~-d~~i 88 (270)
.+..|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+..... ..+..+.+ .+ ++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSP--DGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECC--CcceEEeccCCCCccE
Confidence 467899999999999999999999999999999998876 6666666432 25777777 66 766 5555444 9999
Q ss_pred EEEEccC-CccCCCCccceecccceEEEEeeccCCccceecC--CCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245 89 KCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP 161 (270)
Q Consensus 89 ~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~ 161 (270)
.+||... ... ...+..+......+............. .+...+|+......+. .+.+|.. ++|+|++.
T Consensus 137 ~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 137 KLWDLSTPGKL----IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS-TLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred EEEEecCCCeE----EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE-eeccCCCceEEEEEcCCcc
Confidence 9999987 332 223444444444344443333222222 4566677777644333 3333444 88899987
Q ss_pred eEEEEecCCCceEEEEeCCCcceee-eeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
.++ ++++.|+.|++||...+..+. .+. +|.... +. . |+|++ . ++++++.|+.+++||++.
T Consensus 212 ~~~-~~~~~d~~i~~wd~~~~~~~~~~~~--------~~~~~~---~~--~-~~~~~---~-~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 212 LLI-ASGSSDGTIRLWDLSTGKLLRSTLS--------GHSDSV---VS--S-FSPDG---S-LLASGSSDGTIRLWDLRS 272 (466)
T ss_pred eEE-EEecCCCcEEEEECCCCcEEeeecC--------CCCcce---eE--e-ECCCC---C-EEEEecCCCcEEEeeecC
Confidence 344 355779999999998777777 465 563321 11 4 88853 3 788999999999999997
Q ss_pred CCcceeeeeccCCCeeEEEeecCCCce
Q 024245 241 PGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
....+..+.+|...|.++.|+|++..+
T Consensus 273 ~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 273 SSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred CCcEEEEEecCCccEEEEEECCCCCEE
Confidence 444355556788999999999966554
No 192
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.3e-13 Score=109.62 Aligned_cols=220 Identities=12% Similarity=0.040 Sum_probs=129.8
Q ss_pred cccccccEEEEEEeCCCCEEEEec---CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE-eCCC--c
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGT---TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDG--T 87 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~--~ 87 (270)
+..+...+...+|+|||+.|+..+ .+..|.+|++.+++....... . ..+..+.|+| +|+.|+.. +.+| .
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~--~~~~~~~~SP--DG~~La~~~~~~g~~~ 268 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P--RHNGAPAFSP--DGSKLAFALSKTGSLN 268 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-C--CCcCCeEECC--CCCEEEEEEcCCCCcE
Confidence 334566889999999999887653 245799999988765433222 2 2255789999 99988744 4455 5
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEE--EeccCceeeeccCCCCC--eEecCCCCeE
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK--DDVPAEGPKY 163 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~s~~~~~~ 163 (270)
|.+||+.+++... +... ........++.++..........+...+| ++..++.......+... ..|+|||+.+
T Consensus 269 I~~~d~~tg~~~~--lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 269 LYVMDLASGQIRQ--VTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred EEEEECCCCCEEE--ccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 8889998875432 1111 11111122222222111111122233454 44444333222223222 8899999987
Q ss_pred EEEecC-CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc---EEEEEcC
Q 024245 164 MAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS---ILVWDIR 239 (270)
Q Consensus 164 ~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~---i~vwd~~ 239 (270)
+++... ....|.+||+.+++.. .+.. .+ ...... |+| ||+ +|+..+.++. +.++++.
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~-------~~------~~~~p~-~Sp---DG~-~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQ-VLTD-------TF------LDETPS-IAP---NGT-MVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EeCC-------CC------CCCCce-ECC---CCC-EEEEEEcCCCceEEEEEECC
Confidence 664332 1245888999877643 3431 11 112344 998 566 6777766653 6777775
Q ss_pred CCCcceeeeeccCCCeeEEEeec
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
+.....+.+|.+.+...+|+|
T Consensus 407 --G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 407 --GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --CCCeEECccCCCCcCCcccCC
Confidence 566677778888899999997
No 193
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=3.3e-14 Score=110.32 Aligned_cols=163 Identities=17% Similarity=0.266 Sum_probs=115.1
Q ss_pred cccEEEEEEeC-CCCEEEEecCCCcEEEEeCCC--------------CceeEEE--e----------ecCCCcceEEEEE
Q 024245 18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ--------------HRTVSSS--W----------VHSAAHGIVSVAT 70 (270)
Q Consensus 18 ~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~--------------~~~~~~~--~----------~~~~~~~v~~~~~ 70 (270)
+..|+|+.|-| +...++.+-.+|.++++|.+. +...... + -+..++.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 37899999999 444667778899999997642 1111110 0 1112256899999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccce-EEEEeeccCCccceecCCCCceEEEeccCceeeeccC
Q 024245 71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL 149 (270)
Q Consensus 71 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (270)
+| ||++|++.++||.+||||..+.++.. .++.-... .|
T Consensus 299 S~--DG~~LA~VSqDGfLRvF~fdt~eLlg----~mkSYFGGLLC----------------------------------- 337 (636)
T KOG2394|consen 299 SP--DGKYLATVSQDGFLRIFDFDTQELLG----VMKSYFGGLLC----------------------------------- 337 (636)
T ss_pred cC--CCceEEEEecCceEEEeeccHHHHHH----HHHhhccceEE-----------------------------------
Confidence 99 99999999999999999999876543 22211111 11
Q ss_pred CCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC-------------
Q 024245 150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS------------- 216 (270)
Q Consensus 150 ~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~------------- 216 (270)
++|||||++++ +|++|--|.||.+..++.+..=+ || ..+|..++ |.|-
T Consensus 338 ----vcWSPDGKyIv--tGGEDDLVtVwSf~erRVVARGq--------GH----kSWVs~Va-FDpytt~~ee~~~~~~~ 398 (636)
T KOG2394|consen 338 ----VCWSPDGKYIV--TGGEDDLVTVWSFEERRVVARGQ--------GH----KSWVSVVA-FDPYTTSTEEWNNFSGM 398 (636)
T ss_pred ----EEEcCCccEEE--ecCCcceEEEEEeccceEEEecc--------cc----ccceeeEe-ecccccccccccccccc
Confidence 67999999665 68889999999999988887766 66 44555555 6521
Q ss_pred ------------------CC-C------------CceEEEEecCCCcEEEEEcCC
Q 024245 217 ------------------KS-Q------------GFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 217 ------------------~~-~------------g~~~l~~~~~dg~i~vwd~~~ 240 (270)
.+ + -.+.|.+.+.|-.+.+||+..
T Consensus 399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 00 1 135789999999999999975
No 194
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=3.6e-13 Score=108.58 Aligned_cols=187 Identities=25% Similarity=0.496 Sum_probs=136.6
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCC-EEEEEeCCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG 86 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~ 86 (270)
.....+.+|...|.+++|+|++.++++++. |+.+++|++..+..+..+..|. ..|.+++|+| ++. .+++++.|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~~~~~~~d~ 221 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT--DPVSSLAFSP--DGGLLIASGSSDG 221 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC--CceEEEEEcC--CcceEEEEecCCC
Confidence 456678889999999999999998988886 9999999999888888888877 6699999998 776 555669999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 166 (270)
.|++||...+..... .+..+.... + ..|++++.. ++
T Consensus 222 ~i~~wd~~~~~~~~~---~~~~~~~~~--~-------------------------------------~~~~~~~~~-~~- 257 (466)
T COG2319 222 TIRLWDLSTGKLLRS---TLSGHSDSV--V-------------------------------------SSFSPDGSL-LA- 257 (466)
T ss_pred cEEEEECCCCcEEee---ecCCCCcce--e-------------------------------------EeECCCCCE-EE-
Confidence 999998774433210 111111110 0 037888843 43
Q ss_pred ecCCCceEEEEeCCCcce-eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 167 AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
+++.|+.+++||.+.... +..+. +| ...+.++. |.|. +. .+++++.|+.+.+||..+ ....
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~~~~~~~d~~~~~~~~~~-~~~~ 319 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLS--------GH----SSSVLSVA-FSPD---GK-LLASGSSDGTVRLWDLET-GKLL 319 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEe--------cC----CccEEEEE-ECCC---CC-EEEEeeCCCcEEEEEcCC-CceE
Confidence 677799999999987665 44442 45 34566666 9984 33 666688889999999887 5544
Q ss_pred eeee--ccCCCeeEEEee
Q 024245 246 TAMK--VHLEPGLECSMW 261 (270)
Q Consensus 246 ~~~~--~~~~~v~~~~~s 261 (270)
.... .|...+..+.|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~ 337 (466)
T COG2319 320 SSLTLKGHEGPVSSLSFS 337 (466)
T ss_pred EEeeecccCCceEEEEEC
Confidence 4444 777778999883
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.5e-13 Score=113.43 Aligned_cols=231 Identities=13% Similarity=0.162 Sum_probs=147.4
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
..-..+.|+|-...++++...-.|+|||.+.++....|..+.. ...|+.+.+-...|..++++++.||.|+||+--...
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3456788999888898888777899999999998887764332 256999999886677789999999999999753322
Q ss_pred cCC-CCcc---ce----ecccceEEEEeeccCCccceecCC---CCceEEEeccCceeeeccCCCCC--eEecCC---CC
Q 024245 98 LSS-NPSL---TI----KTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVGETVDTDSLCDSK--DDVPAE---GP 161 (270)
Q Consensus 98 ~~~-~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~---~~ 161 (270)
..+ +.+. .+ .+..... +-+++......+... ..+++||............+... .+++++ |.
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~--~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTG--LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCC--eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 100 0000 11 1111111 223333333333322 34667998888877766666554 555543 43
Q ss_pred eEEEEecCCCceEEEEeCCCcc---eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
+++ +|..||.|++||.+... .+.... .|..... ++.+. +.+. |.-.|++|+.||.|++||+
T Consensus 1223 -~i~-AGfaDGsvRvyD~R~a~~ds~v~~~R--------~h~~~~~--Iv~~s-lq~~---G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1223 -IIA-AGFADGSVRVYDRRMAPPDSLVCVYR--------EHNDVEP--IVHLS-LQRQ---GLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred -eEE-EeecCCceEEeecccCCccccceeec--------ccCCccc--ceeEE-eecC---CCcceeeeccCCeEEEEec
Confidence 443 68889999999998654 344455 5655322 66666 7764 3226999999999999999
Q ss_pred CCC-CcceeeeeccC---CCeeEEEeecCCCce
Q 024245 239 RNP-GIPLTAMKVHL---EPGLECSMWRNPITM 267 (270)
Q Consensus 239 ~~~-~~~~~~~~~~~---~~v~~~~~s~~g~~l 267 (270)
+.. .+....+..|. +..+++..+++...|
T Consensus 1287 R~~~~e~~~~iv~~~~yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1287 RMSSKETFLTIVAHWEYGSALTALTVHEHAPII 1319 (1387)
T ss_pred ccCcccccceeeeccccCccceeeeeccCCCee
Confidence 983 22222222222 247777777766554
No 196
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.3e-14 Score=110.53 Aligned_cols=200 Identities=13% Similarity=0.129 Sum_probs=142.7
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
..-.|...|+.+.|+..|.||++...+ ..|.|+++.......-|.-.. +.|.++.|+| ...+|+.++. ..|+
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHP--s~p~lfVaTq-~~vR 590 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHP--SKPYLFVATQ-RSVR 590 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecC--CCceEEEEec-cceE
Confidence 344588999999999999999987553 579999998776665554444 5599999999 6667777664 5799
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-CCceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~ 164 (270)
+||+....+++ .+.........+++........+... .....+|+.....+...+.-|.. ++|++.=. |
T Consensus 591 iYdL~kqelvK----kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP--L 664 (733)
T KOG0650|consen 591 IYDLSKQELVK----KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP--L 664 (733)
T ss_pred EEehhHHHHHH----HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc--e
Confidence 99998876544 44455555566666655555444433 33444677777666667777766 77777554 5
Q ss_pred EEecCCCceEEEEeCC------Ccc---eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 165 AVAGEQLSEVEIWDLN------TAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~------~~~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
+++|+.||++.||.-. ... ++..+. ||.......+..+. |+|..+ +|++++.||+|++
T Consensus 665 fas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~--------gH~~~~~~gVLd~~-wHP~qp----WLfsAGAd~tirl 731 (733)
T KOG0650|consen 665 FASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR--------GHEKTNDLGVLDTI-WHPRQP----WLFSAGADGTIRL 731 (733)
T ss_pred eeeecCCCcEEEEeeeeehhhhcCCceEeeeecc--------CceeecccceEeec-ccCCCc----eEEecCCCceEEe
Confidence 5588989999998533 222 345555 78655455677887 999866 9999999999999
Q ss_pred E
Q 024245 236 W 236 (270)
Q Consensus 236 w 236 (270)
|
T Consensus 732 f 732 (733)
T KOG0650|consen 732 F 732 (733)
T ss_pred e
Confidence 8
No 197
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=9.3e-13 Score=106.23 Aligned_cols=222 Identities=12% Similarity=0.038 Sum_probs=128.9
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCc
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT 87 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~ 87 (270)
+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... .... ..+.+..|+| +|+.|+ +.+.++.
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~--g~~~~~~~SP--DG~~la~~~~~~g~ 263 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFK--GSNSAPAWSP--DGRTLAVALSRDGN 263 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCC--CCccceEECC--CCCEEEEEEccCCC
Confidence 3445677889999999999988876643 3599999998876543 2222 3367899999 998876 6678888
Q ss_pred EEEEEcc--CCccCCCCccceeccc--ceEEEEeeccCCccceecCCCCceEEEec--cCceeeeccCCCCC--eEecCC
Q 024245 88 VKCWDIE--NGGLSSNPSLTIKTNS--YHFCKLSLVKEPYANAKQANEPKDCYERE--VGETVDTDSLCDSK--DDVPAE 159 (270)
Q Consensus 88 i~~wd~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~s~~ 159 (270)
..+|.++ ++... .+.... .....++.++.........++...+|.+. .+......+.+... ..|+|+
T Consensus 264 ~~Iy~~d~~~~~~~-----~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD 338 (427)
T PRK02889 264 SQIYTVNADGSGLR-----RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD 338 (427)
T ss_pred ceEEEEECCCCCcE-----ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence 7777654 33321 111111 11122332222222222223344555543 33332223333322 789999
Q ss_pred CCeEEEEecCC-CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc--EEEE
Q 024245 160 GPKYMAVAGEQ-LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVW 236 (270)
Q Consensus 160 ~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~--i~vw 236 (270)
|++++.++... +..|.+||+.+++.. .+.. +. ...... |+| ||+.++++....|. +++.
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-------~~------~~~~p~-~sp---dg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-------TT------RDESPS-FAP---NGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCCeE-EccC-------CC------CccCce-ECC---CCCEEEEEEecCCCEEEEEE
Confidence 99877544321 136999999887644 3331 11 113345 999 46634444444444 5555
Q ss_pred EcCCCCcceeeeeccCCCeeEEEeecC
Q 024245 237 DIRNPGIPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 237 d~~~~~~~~~~~~~~~~~v~~~~~s~~ 263 (270)
++. +.....+..+.+.+...+|+|-
T Consensus 401 ~~~--g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 401 SSD--GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ECC--CCceEEeecCCCCCCCCccCCC
Confidence 553 5666666666677888899873
No 198
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.7e-13 Score=107.36 Aligned_cols=223 Identities=12% Similarity=0.036 Sum_probs=129.1
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCC-
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG- 86 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~- 86 (270)
+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... .... ....+..|+| +|+.|+ +.+.+|
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~--g~~~~~~~Sp--DG~~l~~~~s~~g~ 271 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFR--GINGAPSFSP--DGRRLALTLSRDGN 271 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCC--CCccCceECC--CCCEEEEEEeCCCC
Confidence 3455677789999999999988877643 4699999988765433 2222 3356789999 988775 555555
Q ss_pred -cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEE--EeccCceeeeccCCCCC--eEecCCCC
Q 024245 87 -TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK--DDVPAEGP 161 (270)
Q Consensus 87 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~s~~~~ 161 (270)
.|.+||+.+++... +.... .......++.+...........+...+| ++..++.......+... .+|+|+|+
T Consensus 272 ~~Iy~~d~~~g~~~~--lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 272 PEIYVMDLGSRQLTR--LTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGK 348 (433)
T ss_pred ceEEEEECCCCCeEE--CccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence 59999998876432 11110 0111112222221111111112233344 44444433333333333 89999999
Q ss_pred eEEEEecCC-CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC--CcEEEEEc
Q 024245 162 KYMAVAGEQ-LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--GSILVWDI 238 (270)
Q Consensus 162 ~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d--g~i~vwd~ 238 (270)
.+++.+... +..|.+||+.+++.. .+.. +. ...... |+| ||+.++++.... +.|+++++
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-------~~------~~~~p~-~sp---dG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-------GS------LDESPS-FAP---NGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE-ECCC-------CC------CCCCce-ECC---CCCEEEEEEecCCceEEEEEEC
Confidence 887654421 236999999877654 3431 11 122344 998 466334443332 35777777
Q ss_pred CCCCcceeeeeccCCCeeEEEeec
Q 024245 239 RNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
. +.....+..+.+.+...+|+|
T Consensus 411 ~--g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 411 D--GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C--CCceEEcccCCCCCCCCccCC
Confidence 5 455566665667788888887
No 199
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=5.3e-13 Score=108.05 Aligned_cols=186 Identities=11% Similarity=0.013 Sum_probs=117.1
Q ss_pred cccccccccEEEEEEeCCCCEEEEecC---CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCc
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT 87 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~ 87 (270)
+.+..|...+...+|+|||+.|+..+. +..|.+||+.+++... +.... ..+....|+| +|+.|+ +.+.++.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~--g~~~~~~~SP--DG~~la~~~~~~g~ 269 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP--GMTFAPRFSP--DGRKVVMSLSQGGN 269 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC--CcccCcEECC--CCCEEEEEEecCCC
Confidence 456677889999999999998887653 4689999998876543 33333 4477899999 998775 5666665
Q ss_pred --EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEE
Q 024245 88 --VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (270)
Q Consensus 88 --i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 165 (270)
|.+||+.++.... +....... ....|+|||+.+++
T Consensus 270 ~~Iy~~d~~~~~~~~-----Lt~~~~~~--------------------------------------~~~~~spDG~~i~f 306 (435)
T PRK05137 270 TDIYTMDLRSGTTTR-----LTDSPAID--------------------------------------TSPSYSPDGSQIVF 306 (435)
T ss_pred ceEEEEECCCCceEE-----ccCCCCcc--------------------------------------CceeEcCCCCEEEE
Confidence 6666777664321 11110000 00459999998776
Q ss_pred EecCCC--ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC---CcEEEEEcCC
Q 024245 166 VAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRN 240 (270)
Q Consensus 166 ~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d---g~i~vwd~~~ 240 (270)
++ ..+ ..|+++|+..++. ..+.. + ........ |+|+ |+ +|+..+.+ ..|.+||+..
T Consensus 307 ~s-~~~g~~~Iy~~d~~g~~~-~~lt~--------~----~~~~~~~~-~Spd---G~-~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 307 ES-DRSGSPQLYVMNADGSNP-RRISF--------G----GGRYSTPV-WSPR---GD-LIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred EE-CCCCCCeEEEEECCCCCe-EEeec--------C----CCcccCeE-ECCC---CC-EEEEEEcCCCceEEEEEECCC
Confidence 44 223 3688888876554 33331 1 11233455 9995 55 55554432 3688888765
Q ss_pred CCcceeeeeccCCCeeEEEeecCCCce
Q 024245 241 PGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+. ...+.. ...+....|+|||+.|
T Consensus 368 -~~-~~~lt~-~~~~~~p~~spDG~~i 391 (435)
T PRK05137 368 -SG-ERILTS-GFLVEGPTWAPNGRVI 391 (435)
T ss_pred -Cc-eEeccC-CCCCCCCeECCCCCEE
Confidence 33 333332 2357789999999876
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=5.2e-13 Score=99.12 Aligned_cols=185 Identities=14% Similarity=0.170 Sum_probs=117.8
Q ss_pred cccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCC----c--------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH----R--------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 18 ~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~----~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
+..|+|++|-| .+..|+.|...| |.+|..... . +.+.++...+ .+|++|.|++ ||..+++++.
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~--dgt~l~tAS~ 215 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE--DGTILVTASF 215 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC--CCCEEeeccc
Confidence 56899999999 556888888876 999987531 1 1122332222 7799999999 9999998874
Q ss_pred -CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245 85 -DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (270)
Q Consensus 85 -d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 163 (270)
|..|.+||..++.... +...... .+ +. +.|||||.++
T Consensus 216 gsssi~iWdpdtg~~~p--L~~~glg--g~---sl-----------------------------------LkwSPdgd~l 253 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIP--LIPKGLG--GF---SL-----------------------------------LKWSPDGDVL 253 (445)
T ss_pred CcceEEEEcCCCCCccc--ccccCCC--ce---ee-----------------------------------EEEcCCCCEE
Confidence 6789999999987643 2211111 11 00 5699999999
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
++++. |+..++|............. ..+.+...+ |+| +|+++|++.+..-.++--... ++
T Consensus 254 faAt~--davfrlw~e~q~wt~erw~l------------gsgrvqtac-Wsp---cGsfLLf~~sgsp~lysl~f~--~~ 313 (445)
T KOG2139|consen 254 FAATC--DAVFRLWQENQSWTKERWIL------------GSGRVQTAC-WSP---CGSFLLFACSGSPRLYSLTFD--GE 313 (445)
T ss_pred EEecc--cceeeeehhcccceecceec------------cCCceeeee-ecC---CCCEEEEEEcCCceEEEEeec--CC
Confidence 87554 79999996543332222221 123455555 999 566677777765544433222 11
Q ss_pred c--------------eeee------ec---cCCCeeEEEeecCCCcee
Q 024245 244 P--------------LTAM------KV---HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 244 ~--------------~~~~------~~---~~~~v~~~~~s~~g~~ls 268 (270)
+ +..+ .+ -.+.+.+++|.|.|.+|.
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence 1 0001 11 135788999999999975
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=2.8e-14 Score=110.88 Aligned_cols=167 Identities=18% Similarity=0.237 Sum_probs=125.0
Q ss_pred CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (270)
Q Consensus 31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 110 (270)
..++.++.||.+.|-+ +.++..+.+..|. +.|.+-.|+| +|.-|+++++||.|++|.-. |-+.. ++....
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~--~A~~~gRW~~--dGtgLlt~GEDG~iKiWSrs-GMLRS----tl~Q~~ 145 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHA--AAISSGRWSP--DGAGLLTAGEDGVIKIWSRS-GMLRS----TVVQNE 145 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhh--hhhhhcccCC--CCceeeeecCCceEEEEecc-chHHH----HHhhcC
Confidence 3678888999999887 4466667778888 6699999999 99999999999999999754 22111 111111
Q ss_pred ceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (270)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 190 (270)
....+ ++|.|+...++. +.+ +.+.|=-+.....+.+.+
T Consensus 146 ~~v~c--------------------------------------~~W~p~S~~vl~-c~g--~h~~IKpL~~n~k~i~Wk- 183 (737)
T KOG1524|consen 146 ESIRC--------------------------------------ARWAPNSNSIVF-CQG--GHISIKPLAANSKIIRWR- 183 (737)
T ss_pred ceeEE--------------------------------------EEECCCCCceEE-ecC--CeEEEeecccccceeEEe-
Confidence 11110 458888888776 433 677777777666666777
Q ss_pred CcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+| .+.+.++. |+|... ++++|++|-..++||-. ++++..-..|..+|++++|.||..++
T Consensus 184 -------AH----DGiiL~~~-W~~~s~----lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd~~~~ 242 (737)
T KOG1524|consen 184 -------AH----DGLVLSLS-WSTQSN----IIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPEKDYL 242 (737)
T ss_pred -------cc----CcEEEEee-cCcccc----ceeecCCceeEEeeccc--CcccccCChhccceeeeeecccccee
Confidence 67 56899998 999744 99999999999999977 67777777888899999999985553
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.58 E-value=4e-14 Score=100.63 Aligned_cols=161 Identities=18% Similarity=0.254 Sum_probs=113.3
Q ss_pred ccccEEEEEEeC-CCC--EEEEecCCCcEEEEeCCCCceeE----------EEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 17 HRASVTDVCFHQ-TKP--ILFAGTTGGELRIWDTVQHRTVS----------SSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 17 h~~~v~~~~~s~-~~~--~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
..+.+.|..+.. .+. ++++|-++|.+.+||+.++..+- ....|. .+|.++.+.+ .-+.=++|+
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~--qpvlsldyas--~~~rGisgg 224 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK--QPVLSLDYAS--SCDRGISGG 224 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc--Ccceeeeech--hhcCCcCCC
Confidence 356788887654 333 67788899999999999873332 233455 6699999988 445567788
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 163 (270)
.+..+..|.+....... ++.. .. ...-.|..++.+.||++ +
T Consensus 225 a~dkl~~~Sl~~s~gsl----q~~~---e~-------------------------------~lknpGv~gvrIRpD~K-I 265 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSL----QIRK---EI-------------------------------TLKNPGVSGVRIRPDGK-I 265 (323)
T ss_pred ccccceeeeeccccCcc----cccc---eE-------------------------------EecCCCccceEEccCCc-E
Confidence 88889999886542111 0000 00 00111112256778986 4
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
++ +++.|+.||||..++.+++..++ -| .+.+++++ |+|+.+ ++|+++.|++|.+|++
T Consensus 266 lA-TAGWD~RiRVyswrtl~pLAVLk--------yH----sagvn~vA-fspd~~----lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LA-TAGWDHRIRVYSWRTLNPLAVLK--------YH----SAGVNAVA-FSPDCE----LMAAASKDARISLWKL 322 (323)
T ss_pred Ee-ecccCCcEEEEEeccCCchhhhh--------hh----hcceeEEE-eCCCCc----hhhhccCCceEEeeec
Confidence 44 67799999999999999999998 56 35788998 999643 9999999999999986
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=2.1e-13 Score=99.49 Aligned_cols=206 Identities=13% Similarity=0.070 Sum_probs=134.7
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeC-CCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~-~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
+.++.++++.|...|++++|+|..+.|++++.|..-+||.. ..++ +...+.-+. ..++++.|+| .++.|++|+
T Consensus 44 ~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN--rAAt~V~WsP--~enkFAVgS 119 (361)
T KOG1523|consen 44 LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN--RAATCVKWSP--KENKFAVGS 119 (361)
T ss_pred CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEec--cceeeEeecC--cCceEEecc
Confidence 35789999999999999999999999999999999999998 4443 333444455 5599999999 999999999
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 163 (270)
..+.|.||=++...--. +...-..+......+ ++|+|++-
T Consensus 120 gar~isVcy~E~ENdWW--VsKhikkPirStv~s------------------------------------ldWhpnnV-- 159 (361)
T KOG1523|consen 120 GARLISVCYYEQENDWW--VSKHIKKPIRSTVTS------------------------------------LDWHPNNV-- 159 (361)
T ss_pred CccEEEEEEEeccccee--hhhhhCCccccceee------------------------------------eeccCCcc--
Confidence 99999999877543211 000000011111111 44677663
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCC----------CCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS----------PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
++++|+.|+..+||..-- +.+..+..... ...-....+.+..+. |+|+++ .|+-.+.|..+
T Consensus 160 LlaaGs~D~k~rVfSayI----K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~-fs~sG~----~lawv~Hds~v 230 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYI----KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL-FSPSGN----RLAWVGHDSTV 230 (361)
T ss_pred eecccccCcceeEEEEee----eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE-eCCCCC----EeeEecCCCce
Confidence 444788899999996421 11110000000 001112456788887 999644 89999999999
Q ss_pred EEEEcCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245 234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 265 (270)
.+-|...+.+.+.......-+..++.|-.+..
T Consensus 231 ~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 231 SFVDAAGPSERVQSVATAQLPLLSVSWISENS 262 (361)
T ss_pred EEeecCCCchhccchhhccCCceeeEeecCCc
Confidence 99998875544444443335566666654433
No 204
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=2.3e-13 Score=100.31 Aligned_cols=243 Identities=16% Similarity=0.206 Sum_probs=149.6
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-----eeEEEeecCC----------CcceEEEEEeeCCCCCEEEEE
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~ 82 (270)
.+-|.++.|...|.+||+|..+|.|.++.-.... ....++.|.. +..|..+.|.+..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568999999999999999999999999754322 2233444432 145889999985455677788
Q ss_pred eCCCcEEEEEccCCccCC------------------CCccc--------------eecccceEEEEeeccCCccceecCC
Q 024245 83 GRDGTVKCWDIENGGLSS------------------NPSLT--------------IKTNSYHFCKLSLVKEPYANAKQAN 130 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~------------------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (270)
..|.+|++|.+....... .|+.. ...+..+...+++.........++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 889999999986543221 11110 0123444455555554444555555
Q ss_pred CCceEEEeccCceeee--ccCCCCC---------eEecCCCCeEEEEecCCCceEEEEeCCCccee----eeeccCcCCC
Q 024245 131 EPKDCYEREVGETVDT--DSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGG 195 (270)
Q Consensus 131 ~~~~~~~~~~~~~~~~--~~~~~~~---------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~ 195 (270)
-.+.+|.++-...-.. ....+.- ..|+|....+++.+++ .|+|++-|+|...+. ..+..+.-+.
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS-KGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS-KGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC-CCcEEEeechhhhhhcchhhhhccccCCc
Confidence 5566676543221111 1111111 6799998888888776 699999999954421 1222111111
Q ss_pred CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC------------CCe---eEEEe
Q 024245 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL------------EPG---LECSM 260 (270)
Q Consensus 196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------------~~v---~~~~~ 260 (270)
....-...-..+..+. |++ +|+ |+++-.. -+|++||+....+++.+++.|. +.| ..++|
T Consensus 264 ~rsffseiIsSISDvK-Fs~---sGr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVK-FSH---SGR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred chhhHHHHhhhhhceE-Ecc---CCc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 1111112334567787 998 466 8887764 4899999987788998888774 223 35778
Q ss_pred ecCCCce
Q 024245 261 WRNPITM 267 (270)
Q Consensus 261 s~~g~~l 267 (270)
+-++.++
T Consensus 338 sg~~~~v 344 (433)
T KOG1354|consen 338 SGNDSYV 344 (433)
T ss_pred cCCcceE
Confidence 8776554
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.7e-13 Score=100.56 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=127.5
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
+-.+..++|++.-..+|++..|-.|++||-.. .+...++.... ..|.+++|-|. .+..|+.|+..| |.+|.....-
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQ-rnvtclawRPl-saselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQ-RNVTCLAWRPL-SASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhh-cceeEEEeccC-Ccceeeeeecce-eEEEEcCccc
Confidence 45688999999666788999999999999776 44445543332 56999999994 345677777655 8899875432
Q ss_pred cCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceE
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEV 174 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i 174 (270)
....++.....+... .....+|.. +.|.+||..++- ++-.|..|
T Consensus 174 n~~r~~~~~s~~~~q--------------------------------vl~~pgh~pVtsmqwn~dgt~l~t-AS~gsssi 220 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQ--------------------------------VLQDPGHNPVTSMQWNEDGTILVT-ASFGSSSI 220 (445)
T ss_pred ccccccccccccchh--------------------------------heeCCCCceeeEEEEcCCCCEEee-cccCcceE
Confidence 211111111111000 001223322 779999976653 45568899
Q ss_pred EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (270)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 254 (270)
.|||..++..+..... ..+.+.-+. |+|+ |. +|+++.-|+..++|+.........-..+ ++.
T Consensus 221 ~iWdpdtg~~~pL~~~------------glgg~slLk-wSPd---gd-~lfaAt~davfrlw~e~q~wt~erw~lg-sgr 282 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIPK------------GLGGFSLLK-WSPD---GD-VLFAATCDAVFRLWQENQSWTKERWILG-SGR 282 (445)
T ss_pred EEEcCCCCCccccccc------------CCCceeeEE-EcCC---CC-EEEEecccceeeeehhcccceecceecc-CCc
Confidence 9999998886654421 123444565 9995 44 9999999999999966542333333333 458
Q ss_pred eeEEEeecCCCce
Q 024245 255 GLECSMWRNPITM 267 (270)
Q Consensus 255 v~~~~~s~~g~~l 267 (270)
|...+|+|+|++|
T Consensus 283 vqtacWspcGsfL 295 (445)
T KOG2139|consen 283 VQTACWSPCGSFL 295 (445)
T ss_pred eeeeeecCCCCEE
Confidence 9999999999886
No 206
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.3e-13 Score=101.42 Aligned_cols=173 Identities=10% Similarity=0.200 Sum_probs=120.7
Q ss_pred CCcccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCC-cceEEEEEeeCCCCCEEEEEeC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
.+.+..+++|...++.++|.. .+..+.+|+.||.|++||++.......+...... .+..+++.+- +++.+++|..
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc--k~~ii~~GtE 137 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC--KKNIIACGTE 137 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC--cCCeEEeccc
Confidence 357888999999999999987 4568999999999999999987655555433221 4567777765 5577777653
Q ss_pred ----CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC
Q 024245 85 ----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (270)
Q Consensus 85 ----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 160 (270)
+-.|.+||++..+.... .-...+...+.. +.|+|..
T Consensus 138 ~~~s~A~v~lwDvR~~qq~l~--~~~eSH~DDVT~--------------------------------------lrFHP~~ 177 (376)
T KOG1188|consen 138 LTRSDASVVLWDVRSEQQLLR--QLNESHNDDVTQ--------------------------------------LRFHPSD 177 (376)
T ss_pred cccCceEEEEEEeccccchhh--hhhhhccCccee--------------------------------------EEecCCC
Confidence 56899999998754110 011111111110 5699998
Q ss_pred CeEEEEecCCCceEEEEeCCCcc----eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
..+|+ +|+.||-|.|||+.... ++.++. ....+-.+. |.. ++...|.+-+.+++..+|
T Consensus 178 pnlLl-SGSvDGLvnlfD~~~d~EeDaL~~viN-------------~~sSI~~ig-w~~---~~ykrI~clTH~Etf~~~ 239 (376)
T KOG1188|consen 178 PNLLL-SGSVDGLVNLFDTKKDNEEDALLHVIN-------------HGSSIHLIG-WLS---KKYKRIMCLTHMETFAIY 239 (376)
T ss_pred CCeEE-eecccceEEeeecCCCcchhhHHHhhc-------------ccceeeeee-eec---CCcceEEEEEccCceeEE
Confidence 88887 79999999999997543 233333 233466666 885 342268888899999999
Q ss_pred EcCC
Q 024245 237 DIRN 240 (270)
Q Consensus 237 d~~~ 240 (270)
+++.
T Consensus 240 ele~ 243 (376)
T KOG1188|consen 240 ELED 243 (376)
T ss_pred EccC
Confidence 9987
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=3.8e-12 Score=94.71 Aligned_cols=192 Identities=10% Similarity=0.169 Sum_probs=135.3
Q ss_pred cEEEEEEeCCCCEEEEecC--CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 20 SVTDVCFHQTKPILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
.|--+-|+.. ++|..+. -+.+++.+.+++..+..+... .+|.++.++. ++|+++-++. |.|||+++.+
T Consensus 48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr----~RLvV~Lee~-IyIydI~~Mk 117 (391)
T KOG2110|consen 48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP---TSILAVRMNR----KRLVVCLEES-IYIYDIKDMK 117 (391)
T ss_pred EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC---CceEEEEEcc----ceEEEEEccc-EEEEecccce
Confidence 4555556644 4444433 345999999988888777654 5599999977 6777776654 9999999987
Q ss_pred cCCCCccceecccceEEEEeeccCCccc---eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCC
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYAN---AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQ 170 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~ 170 (270)
.+. .+...+.+....+.+++....... ...+.+.+.+||..+-+.+. .+..|.. ++|+++|. ++| ++++
T Consensus 118 lLh-TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-~I~aH~~~lAalafs~~G~-llA-TASe 193 (391)
T KOG2110|consen 118 LLH-TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN-TINAHKGPLAALAFSPDGT-LLA-TASE 193 (391)
T ss_pred eeh-hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee-EEEecCCceeEEEECCCCC-EEE-Eecc
Confidence 654 122333445556666665543332 23335566778877776655 3447777 89999996 444 5555
Q ss_pred Cce-EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 171 LSE-VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 171 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
.|+ ||||.+.+|+.+++|.. |- ....+.+++ |+|+ ++ +|++.+..++|+++.+..
T Consensus 194 KGTVIRVf~v~~G~kl~eFRR-------G~---~~~~IySL~-Fs~d---s~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 194 KGTVIRVFSVPEGQKLYEFRR-------GT---YPVSIYSLS-FSPD---SQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred CceEEEEEEcCCccEeeeeeC-------Cc---eeeEEEEEE-ECCC---CC-eEEEecCCCeEEEEEecc
Confidence 564 79999999999999985 33 355788898 9996 44 999999999999999875
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=1.5e-14 Score=110.22 Aligned_cols=214 Identities=16% Similarity=0.147 Sum_probs=151.1
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
-.-..+.|+.+|++|+.|+..|.|..+|..+++....+..- ..|..+.|.. +.+++++ .+...+.|||-..-++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LH--neq~~AV-AQK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLH--NEQFFAV-AQKKYVYVYDNNGTEL 203 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh---hhhhhhhhhc--chHHHHh-hhhceEEEecCCCcEE
Confidence 34567899999999999999999999999999998888765 5589999988 7566655 4567899999765432
Q ss_pred CCCCccceecccceEEEEeeccCCc---cceecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCc
Q 024245 99 SSNPSLTIKTNSYHFCKLSLVKEPY---ANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLS 172 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~ 172 (270)
- .+..+. ....+.+-+. .......+.....|+..++.+.....+... ++-+|-.. ++-.|...|
T Consensus 204 H-----Clk~~~---~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na--Vih~GhsnG 273 (545)
T KOG1272|consen 204 H-----CLKRHI---RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA--VIHLGHSNG 273 (545)
T ss_pred e-----ehhhcC---chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc--eEEEcCCCc
Confidence 1 111111 1111222222 223333455566788888877665555444 56666654 444688899
Q ss_pred eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (270)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 252 (270)
+|.+|...+.+++..+- .| .+.+.+++ +.| +|+ |++|.+.|..++|||+++ ...+.++.. .
T Consensus 274 tVSlWSP~skePLvKiL--------cH----~g~V~siA-v~~---~G~-YMaTtG~Dr~~kIWDlR~-~~ql~t~~t-p 334 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKIL--------CH----RGPVSSIA-VDR---GGR-YMATTGLDRKVKIWDLRN-FYQLHTYRT-P 334 (545)
T ss_pred eEEecCCCCcchHHHHH--------hc----CCCcceEE-ECC---CCc-EEeecccccceeEeeecc-ccccceeec-C
Confidence 99999999999888877 46 45677787 998 466 999999999999999999 444444443 3
Q ss_pred CCeeEEEeecCCCce
Q 024245 253 EPGLECSMWRNPITM 267 (270)
Q Consensus 253 ~~v~~~~~s~~g~~l 267 (270)
.+...++||..|.+.
T Consensus 335 ~~a~~ls~SqkglLA 349 (545)
T KOG1272|consen 335 HPASNLSLSQKGLLA 349 (545)
T ss_pred CCcccccccccccee
Confidence 467778888877653
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=2.8e-13 Score=96.89 Aligned_cols=120 Identities=13% Similarity=0.232 Sum_probs=87.2
Q ss_pred cccEEEEEEeCCCCEEEE--ecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEE
Q 024245 18 RASVTDVCFHQTKPILFA--GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWD 92 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~i~~wd 92 (270)
.++|.+++|+|+|+.+|. |..++.|.+||++ ++.+..+. . ..+..+.|+| +|++|+.++. .|.|.+||
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~--~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--T--QPRNTISWSP--DGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--C--CCceEEEECC--CCCEEEEEEccCCCcEEEEEE
Confidence 457999999999997644 5567899999997 66666654 3 4478999999 9999998864 46799999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC---
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE--- 169 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--- 169 (270)
+++.+.+. ..+... .. . ++|+|+|++++.++..
T Consensus 132 ~~~~~~i~----~~~~~~-~t---~------------------------------------~~WsPdGr~~~ta~t~~r~ 167 (194)
T PF08662_consen 132 VRKKKKIS----TFEHSD-AT---D------------------------------------VEWSPDGRYLATATTSPRL 167 (194)
T ss_pred CCCCEEee----ccccCc-EE---E------------------------------------EEEcCCCCEEEEEEeccce
Confidence 99765432 221111 00 0 5699999988865543
Q ss_pred -CCceEEEEeCCCcceeeeec
Q 024245 170 -QLSEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 170 -~d~~i~iwd~~~~~~~~~~~ 189 (270)
.|+.++||+.. |+.+.+..
T Consensus 168 ~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 168 RVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred eccccEEEEEec-CeEeEecc
Confidence 47889999985 77766654
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.7e-13 Score=109.45 Aligned_cols=231 Identities=18% Similarity=0.225 Sum_probs=143.4
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC-CEEEEEeCCCcEEEEE
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCWD 92 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d~~i~~wd 92 (270)
+-|-...-..-.|++|+++++.... ..|.||...++.++..+..|. .++..+.+.|.... .++++++.||.|++||
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~--a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHT--APLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhccccc--CccceeeecCCCccceEEEEEecCccEEEec
Confidence 3343333344568999998887665 479999999999999999998 77999999985332 4677999999999999
Q ss_pred ccCCccCCCCccceecccceE------------------EEEe---e---------------------------------
Q 024245 93 IENGGLSSNPSLTIKTNSYHF------------------CKLS---L--------------------------------- 118 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~---~--------------------------------- 118 (270)
...+.+.+.....++.+.... ..+. .
T Consensus 89 ~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~ 168 (792)
T KOG1963|consen 89 WSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD 168 (792)
T ss_pred CCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE
Confidence 988766541100000000000 0000 0
Q ss_pred ccCCccceecCCCCceEEEeccCceee---eccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCC--c--ceeee
Q 024245 119 VKEPYANAKQANEPKDCYEREVGETVD---TDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNT--A--ERCTR 187 (270)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~--~--~~~~~ 187 (270)
........+.-...+.+|......... ..-..|.. .+++|+++++. +|..||.|.+|.--. + .....
T Consensus 169 ~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~A--a~d~dGrI~vw~d~~~~~~~~t~t~ 246 (792)
T KOG1963|consen 169 NNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLA--AGDSDGRILVWRDFGSSDDSETCTL 246 (792)
T ss_pred cCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEE--EeccCCcEEEEeccccccccccceE
Confidence 000000000111111122222211000 01111222 78999998543 677899999996432 1 12233
Q ss_pred eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 188 ~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+.. ....++++. |+++ |. +|++|+..|.+.+|.+.+ ++ .+.++.-.++|..+.+|||+.+.
T Consensus 247 lHW------------H~~~V~~L~-fS~~---G~-~LlSGG~E~VLv~Wq~~T-~~-kqfLPRLgs~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 247 LHW------------HHDEVNSLS-FSSD---GA-YLLSGGREGVLVLWQLET-GK-KQFLPRLGSPILHIVVSPDSDLY 307 (792)
T ss_pred EEe------------cccccceeE-EecC---Cc-eEeecccceEEEEEeecC-CC-cccccccCCeeEEEEEcCCCCeE
Confidence 332 244788888 9985 55 999999999999999999 44 45566677899999999999875
Q ss_pred e
Q 024245 268 S 268 (270)
Q Consensus 268 s 268 (270)
+
T Consensus 308 s 308 (792)
T KOG1963|consen 308 S 308 (792)
T ss_pred E
Confidence 4
No 211
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.3e-14 Score=109.06 Aligned_cols=84 Identities=24% Similarity=0.332 Sum_probs=72.7
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+...|.+|.+.|+.+.|+..|..|++|+.|..|.+||..+++....+. +|. ..|....|.|..+...+++++.||.+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~--~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC--NNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccc--cchhhhhccCCCCCcCceeccccCce
Confidence 456788999999999999999999999999999999999888777664 566 55888899997666789999999999
Q ss_pred EEEEccC
Q 024245 89 KCWDIEN 95 (270)
Q Consensus 89 ~~wd~~~ 95 (270)
++=.+..
T Consensus 212 r~s~i~~ 218 (559)
T KOG1334|consen 212 RVSEILE 218 (559)
T ss_pred eeeeecc
Confidence 9887643
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.9e-12 Score=106.00 Aligned_cols=78 Identities=23% Similarity=0.428 Sum_probs=66.1
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC--C--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--H--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
.|...++|.++||+++++|+|..||.|.+|.--. + .....+.=|. +.|.+++|++ +|.+|+||+..+.+.+|
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~--~~V~~L~fS~--~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH--DEVNSLSFSS--DGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc--cccceeEEec--CCceEeecccceEEEEE
Confidence 4777799999999999999999999999997432 2 2333454455 6699999999 99999999999999999
Q ss_pred EccCCc
Q 024245 92 DIENGG 97 (270)
Q Consensus 92 d~~~~~ 97 (270)
.+.+++
T Consensus 279 q~~T~~ 284 (792)
T KOG1963|consen 279 QLETGK 284 (792)
T ss_pred eecCCC
Confidence 999987
No 213
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=8.2e-12 Score=97.77 Aligned_cols=215 Identities=8% Similarity=0.076 Sum_probs=117.2
Q ss_pred EEEecCCCcEEEEeCCC-Cc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEEEEEccC-CccCCCCcccee
Q 024245 33 LFAGTTGGELRIWDTVQ-HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN-GGLSSNPSLTIK 107 (270)
Q Consensus 33 l~s~~~dg~i~vwd~~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~-~~~~~~~~~~~~ 107 (270)
+++...++.|.+||+.+ ++ .++.+... .....++++| ++++|++++ .++.|.+|++.. ++... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~--~~~~~ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTF--AAESP 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecC---CCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEE--eeeec
Confidence 34446789999999964 33 44444432 3467899999 989887654 578899999973 33211 11111
Q ss_pred cccceEEEEeeccCCc--cceecCCCCceEEEeccCcee---eeccCCCC--C-eEecCCCCeEEEEecCCCceEEEEeC
Q 024245 108 TNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETV---DTDSLCDS--K-DDVPAEGPKYMAVAGEQLSEVEIWDL 179 (270)
Q Consensus 108 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~-~~~s~~~~~~~~~~~~~d~~i~iwd~ 179 (270)
. ....+.+.+..... .......+....|++.....+ .....+.. . ++++|+++++++ +...++.|.+||+
T Consensus 78 ~-~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v-~~~~~~~v~v~d~ 155 (330)
T PRK11028 78 L-PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV-PCLKEDRIRLFTL 155 (330)
T ss_pred C-CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE-eeCCCCEEEEEEE
Confidence 1 11122233332222 222223455566777532211 11122221 2 789999988776 4556799999999
Q ss_pred CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC-CCcEEEEEcCCC-C--cceeeeecc----
Q 024245 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNP-G--IPLTAMKVH---- 251 (270)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~-dg~i~vwd~~~~-~--~~~~~~~~~---- 251 (270)
.+...+...... ............+. |+| +|+ +++++.+ ++.|.+||+... + +.+..+..+
T Consensus 156 ~~~g~l~~~~~~------~~~~~~g~~p~~~~-~~p---dg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 156 SDDGHLVAQEPA------EVTTVEGAGPRHMV-FHP---NQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred CCCCcccccCCC------ceecCCCCCCceEE-ECC---CCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 763322110000 00000111233455 998 466 6655554 899999999742 2 223333221
Q ss_pred --CCCeeEEEeecCCCce
Q 024245 252 --LEPGLECSMWRNPITM 267 (270)
Q Consensus 252 --~~~v~~~~~s~~g~~l 267 (270)
......+.|+|||++|
T Consensus 225 ~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 225 SDTRWAADIHITPDGRHL 242 (330)
T ss_pred CCCccceeEEECCCCCEE
Confidence 1123468899999865
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2e-12 Score=104.44 Aligned_cols=195 Identities=13% Similarity=0.093 Sum_probs=111.5
Q ss_pred CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEccCCccCCCCccceecccceEEE
Q 024245 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (270)
Q Consensus 39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 115 (270)
+..|.+||..... .+.+..+. ..+.+..|+| +|+.|+.++.+ ..|.+||+.+++... +........ ...
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~-~~~ 254 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSS--QPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKV--VASFRGHNG-APA 254 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCC--CccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEE--EecCCCccC-cee
Confidence 5789999987544 44555555 5699999999 99999877643 369999998875321 222222211 122
Q ss_pred EeeccCCccceecCCCCceEE--EeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeee
Q 024245 116 LSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRL 188 (270)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~ 188 (270)
++.++..........+...+| ++..+.... +..+.. ..|+|||+.++++ +..++...||++.... ....+
T Consensus 255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~--lt~~~~~~~~~~wSpDG~~i~f~-s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 255 FSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ--LTSGAGNNTEPSWSPDGQSILFT-SDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred ECCCCCEEEEEEecCCcEEEEEEECCCCCeEe--eccCCCCcCCEEECCCCCEEEEE-ECCCCCceEEEEECCCCCeEEe
Confidence 222222222222223333444 444443222 222221 8999999987764 4457888888775432 22222
Q ss_pred ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
. + .. .... |+|+ |+ +|+..+.++ +.+||+.+ ++.......+ ...+++|+|||++|-
T Consensus 332 ~---------~----~~--~~~~-~SpD---G~-~ia~~~~~~-i~~~Dl~~-g~~~~lt~~~--~~~~~~~sPdG~~i~ 387 (429)
T PRK01742 332 G---------G----RG--YSAQ-ISAD---GK-TLVMINGDN-VVKQDLTS-GSTEVLSSTF--LDESPSISPNGIMII 387 (429)
T ss_pred c---------C----CC--CCcc-CCCC---CC-EEEEEcCCC-EEEEECCC-CCeEEecCCC--CCCCceECCCCCEEE
Confidence 2 2 11 2345 9984 55 777766654 55699987 5433222222 345788999998763
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=3.6e-12 Score=100.03 Aligned_cols=236 Identities=13% Similarity=0.110 Sum_probs=130.8
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCc
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGT 87 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~ 87 (270)
+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++++ +|+++++++ .++.
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~--DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSP--DGKYVYVANYEPGT 101 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE----TTTEEEEEEEETTE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcC--CCCEEEEEecCCCc
Confidence 5566666544444557899999999999999999999999999999988663 368899999 999988665 6899
Q ss_pred EEEEEccCCccCCCCccceeccc-------ceEEEEeeccCCccceecCCCCceEE--EeccCceeee-cc-CCCCC--e
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNS-------YHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDT-DS-LCDSK--D 154 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~-~~~~~--~ 154 (270)
+.++|.++.+.++ .++... .....+-.................+| |....+.+.. .. .+... .
T Consensus 102 v~v~D~~tle~v~----~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 102 VSVIDAETLEPVK----TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp EEEEETTT--EEE----EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred eeEecccccccee----ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 9999999886544 333221 11122222222222222222233333 4444332221 11 12212 8
Q ss_pred EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCccc-------CCCceeeeeeecCCCCCCCceEEEEe
Q 024245 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-------KGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~-------~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
.|+|++++++++.- .+..|-++|..+++.+..+... ...|.. +..+.++... - .+. ..++.
T Consensus 178 ~~dpdgry~~va~~-~sn~i~viD~~~~k~v~~i~~g----~~p~~~~~~~~php~~g~vw~~~-~-----~~~-~~~~~ 245 (369)
T PF02239_consen 178 GFDPDGRYFLVAAN-GSNKIAVIDTKTGKLVALIDTG----KKPHPGPGANFPHPGFGPVWATS-G-----LGY-FAIPL 245 (369)
T ss_dssp EE-TTSSEEEEEEG-GGTEEEEEETTTTEEEEEEE-S----SSBEETTEEEEEETTTEEEEEEE-B-----SSS-SEEEE
T ss_pred ccCcccceeeeccc-ccceeEEEeeccceEEEEeecc----ccccccccccccCCCcceEEeec-c-----ccc-eeccc
Confidence 89999998887544 3578999999998877766420 001111 1112222221 0 122 22222
Q ss_pred cCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 228 YEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 228 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
-....+.+||..+ .+.++.++....+ ..+.-+||++++
T Consensus 246 ig~~~v~v~d~~~-wkvv~~I~~~G~g-lFi~thP~s~~v 283 (369)
T PF02239_consen 246 IGTDPVSVHDDYA-WKVVKTIPTQGGG-LFIKTHPDSRYV 283 (369)
T ss_dssp EE--TTT-STTTB-TSEEEEEE-SSSS---EE--TT-SEE
T ss_pred ccCCccccchhhc-CeEEEEEECCCCc-ceeecCCCCccE
Confidence 2233666788888 8889999876666 778999999875
No 216
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.49 E-value=6.1e-13 Score=103.60 Aligned_cols=178 Identities=11% Similarity=0.107 Sum_probs=117.2
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+..+....|.++|.+-.|+|||.-|+++++||.|++|.- +|-...++.... .+|+|++|.| +.+.++-+.. +.+
T Consensus 95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~--~~v~c~~W~p--~S~~vl~c~g-~h~ 168 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNE--ESIRCARWAP--NSNSIVFCQG-GHI 168 (737)
T ss_pred hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcC--ceeEEEEECC--CCCceEEecC-CeE
Confidence 455677889999999999999999999999999999984 454444444444 6699999999 6665554433 344
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 168 (270)
.+=.+..... +...+.+.....+ +.|++... ++ ++|
T Consensus 169 ~IKpL~~n~k----~i~WkAHDGiiL~--------------------------------------~~W~~~s~-lI-~sg 204 (737)
T KOG1524|consen 169 SIKPLAANSK----IIRWRAHDGLVLS--------------------------------------LSWSTQSN-II-ASG 204 (737)
T ss_pred EEeecccccc----eeEEeccCcEEEE--------------------------------------eecCcccc-ce-eec
Confidence 4433332211 1223333322221 34667665 33 478
Q ss_pred CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
++|-..+|||.. |..+..-. .| .-.+++++ |+|+ . .++.++.. +++ + -
T Consensus 205 GED~kfKvWD~~-G~~Lf~S~--------~~----ey~ITSva-~npd-~----~~~v~S~n-t~R---~---------~ 252 (737)
T KOG1524|consen 205 GEDFRFKIWDAQ-GANLFTSA--------AE----EYAITSVA-FNPE-K----DYLLWSYN-TAR---F---------S 252 (737)
T ss_pred CCceeEEeeccc-CcccccCC--------hh----ccceeeee-eccc-c----ceeeeeee-eee---e---------c
Confidence 899999999976 66665544 34 34688888 9995 2 55555532 333 1 1
Q ss_pred eccCCCeeEEEeecCCCcee
Q 024245 249 KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 249 ~~~~~~v~~~~~s~~g~~ls 268 (270)
+...+.|..++||+||..+.
T Consensus 253 ~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 253 SPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred CCCccceEEEEEcCCCceee
Confidence 22457899999999998764
No 217
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.48 E-value=8.6e-14 Score=113.40 Aligned_cols=203 Identities=16% Similarity=0.226 Sum_probs=132.4
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+++..++||.+.|+.++.+.+..+++++|.|..|++|.+..+.++..+.+|+ +.|++++|+|. .+.+.||++
T Consensus 223 ~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrght--gavtaiafsP~------~sss~dgt~ 294 (1113)
T KOG0644|consen 223 RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHT--GAVTAIAFSPR------ASSSDDGTC 294 (1113)
T ss_pred hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccc--cceeeeccCcc------ccCCCCCce
Confidence 5788899999999999999999999999999999999999999999999999 66999999993 278899999
Q ss_pred EEEEccCCccCC--CCccceecccceEEEEee------------------------ccCCccceecCCC-----------
Q 024245 89 KCWDIENGGLSS--NPSLTIKTNSYHFCKLSL------------------------VKEPYANAKQANE----------- 131 (270)
Q Consensus 89 ~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~----------- 131 (270)
++||.+-.-... .|.. +... ...+.+-. .+...........
T Consensus 295 ~~wd~r~~~~~y~prp~~-~~~~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 295 RIWDARLEPRIYVPRPLK-FTEK-DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred EeccccccccccCCCCCC-cccc-cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeee
Confidence 999987211110 1110 0000 00000000 0000000000000
Q ss_pred ---CceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCC
Q 024245 132 ---PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR 204 (270)
Q Consensus 132 ---~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~ 204 (270)
....|++.++... ..+.+|.. +.++|-...+.. +.+.||...|||+-.|.+++.+.. +|
T Consensus 373 ~~~~~~vwnl~~g~l~-H~l~ghsd~~yvLd~Hpfn~ri~m-sag~dgst~iwdi~eg~pik~y~~-------gh----- 438 (1113)
T KOG0644|consen 373 NDHRLCVWNLYTGQLL-HNLMGHSDEVYVLDVHPFNPRIAM-SAGYDGSTIIWDIWEGIPIKHYFI-------GH----- 438 (1113)
T ss_pred eeeEeeeeecccchhh-hhhcccccceeeeeecCCCcHhhh-hccCCCceEeeecccCCcceeeec-------cc-----
Confidence 0111222222211 12233333 788898887766 566799999999999988877763 44
Q ss_pred ceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 205 ~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
..+..-+ |++ ||. .++....-|.++|.....
T Consensus 439 ~kl~d~k-FSq---dgt-s~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 439 GKLVDGK-FSQ---DGT-SIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred ceeeccc-cCC---CCc-eEecCCCCCceEEeccCC
Confidence 2344444 998 455 777777778888887654
No 218
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3e-11 Score=98.04 Aligned_cols=222 Identities=13% Similarity=0.026 Sum_probs=125.4
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCC--
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG-- 86 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~-- 86 (270)
.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++..... ... +.+....|+| +|+.|+ +.+.++
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~--g~~~~~~~Sp--DG~~la~~~~~~g~~ 267 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFE--GLNGAPAWSP--DGSKLAFVLSKDGNP 267 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCC--CCcCCeEECC--CCCEEEEEEccCCCc
Confidence 344567788999999999988776543 36999999887654432 222 3356789999 988876 555555
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccCCCCC--eEecCCCCe
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSLCDSK--DDVPAEGPK 162 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~s~~~~~ 162 (270)
.|.+||+.+++... +.... .......++.++..........+...+ +++..++.......+... ..|+|+|+.
T Consensus 268 ~Iy~~d~~~~~~~~--lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 268 EIYVMDLASRQLSR--VTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKT 344 (430)
T ss_pred eEEEEECCCCCeEE--cccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 57788988775422 11111 111111122222211111111222233 344455443333333322 789999998
Q ss_pred EEEEecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc--EEEEEc
Q 024245 163 YMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDI 238 (270)
Q Consensus 163 ~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~--i~vwd~ 238 (270)
+++... .++ .|.+||+.+++. ..+.. .. ...... |+| ||+.++++...+|. |+++++
T Consensus 345 i~~~~~-~~~~~~l~~~dl~tg~~-~~lt~-------~~------~~~~p~-~sp---dg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 345 LVMVHR-QDGNFHVAAQDLQRGSV-RILTD-------TS------LDESPS-VAP---NGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEEEEc-cCCceEEEEEECCCCCE-EEccC-------CC------CCCCce-ECC---CCCEEEEEEecCCceEEEEEEC
Confidence 776443 333 588899987764 33331 11 111234 998 46645555544444 666666
Q ss_pred CCCCcceeeeeccCCCeeEEEeecC
Q 024245 239 RNPGIPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~s~~ 263 (270)
. +.....+..+.+.+...+|+|-
T Consensus 406 ~--g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 406 N--GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred C--CCceEECcCCCCCcCCCccCCC
Confidence 4 4545556555567788888873
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=2.3e-11 Score=88.94 Aligned_cols=174 Identities=12% Similarity=0.238 Sum_probs=116.9
Q ss_pred CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC-ccCCCCccceecccceEEEEee
Q 024245 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSL 118 (270)
Q Consensus 40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~ 118 (270)
..|.|||=...+++.++... .+|.++.+.+ ++|++.- .+.|.||...+. +... .+....++...|.+..
T Consensus 75 NkviIWDD~k~~~i~el~f~---~~I~~V~l~r----~riVvvl-~~~I~VytF~~n~k~l~--~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN---SEIKAVKLRR----DRIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNPKGLCSLCP 144 (346)
T ss_pred ceEEEEecccCcEEEEEEec---cceeeEEEcC----CeEEEEe-cCeEEEEEcCCChhhee--eeecccCCCceEeecC
Confidence 57999997777888888766 6699999988 5666665 457999998743 3222 1122223344444443
Q ss_pred ccCCccceecC--CCCceEEEeccCce-eeeccCCCCC----eEecCCCCeEEEEecCCCce-EEEEeCCCcceeeeecc
Q 024245 119 VKEPYANAKQA--NEPKDCYEREVGET-VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSE-VEIWDLNTAERCTRLHQ 190 (270)
Q Consensus 119 ~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~~ 190 (270)
.........-. .+.+.+.++...+. ......+|.. ++++-+|. ++| +++..|+ |||||..+|+.++++..
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vA-TaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVA-TASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEE-EeccCcEEEEEEEcCCCcEeeeeec
Confidence 33222111111 23444555554443 3446677777 78888885 555 5555565 89999999999999985
Q ss_pred CcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
|- ....+.+++ |+|+.. +|++.|..|+|+|+.++.
T Consensus 223 -------G~---d~A~iy~ia-FSp~~s----~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 223 -------GV---DRADIYCIA-FSPNSS----WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred -------CC---chheEEEEE-eCCCcc----EEEEEcCCCeEEEEEeec
Confidence 33 456788998 999644 999999999999999876
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=2.1e-11 Score=98.66 Aligned_cols=186 Identities=15% Similarity=0.121 Sum_probs=115.0
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCC-
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG- 86 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~- 86 (270)
+.+..+...+...+|+|+|++|+.++.+ ..|++||+.+++..... ... ..+.+++|+| +++.|+ +.+.++
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~--~~~~~~~~sp--Dg~~l~~~~~~~~~ 257 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFP--GMNGAPAFSP--DGSKLAVSLSKDGN 257 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCC--CCccceEECC--CCCEEEEEECCCCC
Confidence 3444566678999999999998877643 47999999887654333 233 3467899999 988776 455444
Q ss_pred -cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEE
Q 024245 87 -TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (270)
Q Consensus 87 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 165 (270)
.|.+||+.++.... +....... ....|+|+|+.+++
T Consensus 258 ~~i~~~d~~~~~~~~-----l~~~~~~~--------------------------------------~~~~~s~dg~~l~~ 294 (417)
T TIGR02800 258 PDIYVMDLDGKQLTR-----LTNGPGID--------------------------------------TEPSWSPDGKSIAF 294 (417)
T ss_pred ccEEEEECCCCCEEE-----CCCCCCCC--------------------------------------CCEEECCCCCEEEE
Confidence 58888887664321 10000000 00348899988776
Q ss_pred EecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC---cEEEEEcCC
Q 024245 166 VAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIRN 240 (270)
Q Consensus 166 ~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg---~i~vwd~~~ 240 (270)
++ ..++ .|.++|+.+++.. .+.. + ........ |+|+ |+ +|+.++.++ .|.+||+.+
T Consensus 295 ~s-~~~g~~~iy~~d~~~~~~~-~l~~--------~----~~~~~~~~-~spd---g~-~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 295 TS-DRGGSPQIYMMDADGGEVR-RLTF--------R----GGYNASPS-WSPD---GD-LIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EE-CCCCCceEEEEECCCCCEE-Eeec--------C----CCCccCeE-ECCC---CC-EEEEEEccCCceEEEEEeCCC
Confidence 43 3333 5888888766543 3331 1 12334455 9984 55 666666655 788999887
Q ss_pred CCcceeeeeccCCCeeEEEeecCCCce
Q 024245 241 PGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+.. ..+... ......+|+|||..|
T Consensus 356 -~~~-~~l~~~-~~~~~p~~spdg~~l 379 (417)
T TIGR02800 356 -GGE-RVLTDT-GLDESPSFAPNGRMI 379 (417)
T ss_pred -CCe-EEccCC-CCCCCceECCCCCEE
Confidence 432 333322 234567899999876
No 221
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.8e-11 Score=97.34 Aligned_cols=218 Identities=11% Similarity=0.027 Sum_probs=122.7
Q ss_pred cccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCc--EE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT--VK 89 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~--i~ 89 (270)
.+...+....|+|||+.|+..+.+ ..|.+||+.+++....... . .......|+| +|+.|+ +.+.++. |.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~--g~~~~~~wSP--DG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-P--GINGAPRFSP--DGKKLALVLSKDGQPEIY 289 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-C--CCcCCeeECC--CCCEEEEEEeCCCCeEEE
Confidence 345567889999999988776543 3588999988765432222 2 2345789999 999776 4566665 77
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEE--EeccCceeeeccCCCCC--eEecCCCCeEEE
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK--DDVPAEGPKYMA 165 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~ 165 (270)
++|+.+++... +.. .........++.+...........+...+| ++..++.......+... .+|+|||+.+++
T Consensus 290 ~~dl~tg~~~~--lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 290 VVDIATKALTR--ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEECCCCCeEE--Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence 77887765422 111 111111122222222211112222233444 44445443333333333 789999998776
Q ss_pred EecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc--EEEEEcCCC
Q 024245 166 VAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNP 241 (270)
Q Consensus 166 ~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~--i~vwd~~~~ 241 (270)
+. ..++ .|.++|+.+++.. .+.. .. ...... |+|+ |+.++++...+|. +++++..
T Consensus 367 ~~-~~~g~~~I~~~dl~~g~~~-~lt~-------~~------~d~~ps-~spd---G~~I~~~~~~~g~~~l~~~~~~-- 425 (448)
T PRK04792 367 VN-RTNGKFNIARQDLETGAMQ-VLTS-------TR------LDESPS-VAPN---GTMVIYSTTYQGKQVLAAVSID-- 425 (448)
T ss_pred EE-ecCCceEEEEEECCCCCeE-EccC-------CC------CCCCce-ECCC---CCEEEEEEecCCceEEEEEECC--
Confidence 43 3344 4566788776643 3331 11 111234 9984 5535555555554 6667764
Q ss_pred CcceeeeeccCCCeeEEEeec
Q 024245 242 GIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~s~ 262 (270)
+.....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 566666766666778888987
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=8.1e-11 Score=92.53 Aligned_cols=177 Identities=16% Similarity=0.111 Sum_probs=111.9
Q ss_pred EEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccce
Q 024245 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (270)
Q Consensus 33 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 112 (270)
+++-..++.|.|.|..+.+.+..+.... ..-..+.|+| ||+++++++.||.|.++|+.+.+.+. .++.....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~----~i~~G~~~ 80 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG--APHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVA----TIKVGGNP 80 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST--TEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEE----EEE-SSEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC--CceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEE----EEecCCCc
Confidence 3556678999999999999999998654 2234578899 99999999999999999999987543 33332222
Q ss_pred EEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc
Q 024245 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (270)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 192 (270)
.. +++|+||+++++ +....+.+.++|.++.+.++.+....
T Consensus 81 ~~---------------------------------------i~~s~DG~~~~v-~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 81 RG---------------------------------------IAVSPDGKYVYV-ANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EE---------------------------------------EEE--TTTEEEE-EEEETTEEEEEETTT--EEEEEE--E
T ss_pred ce---------------------------------------EEEcCCCCEEEE-EecCCCceeEeccccccceeeccccc
Confidence 11 669999998876 45568999999999999999887310
Q ss_pred CCCCCCccc-CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 193 CGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 193 ~~~~~~h~~-~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
... .....+.++. .+|. ...++++--+.+.|.+.|......+......-........|+|+++|+
T Consensus 121 ------~~~~~~~~Rv~aIv-~s~~---~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 121 ------MPVDGPESRVAAIV-ASPG---RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp ------E-TTTS---EEEEE-E-SS---SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE
T ss_pred ------ccccccCCCceeEE-ecCC---CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccccee
Confidence 000 0122344454 5553 222666666668899999887433333333345677889999999875
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.2e-11 Score=92.65 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=125.2
Q ss_pred ccEEEEEEeCC-CCEEEEecCC--CcEEEEeCCCCceeEEEeecCC---------CcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 19 ASVTDVCFHQT-KPILFAGTTG--GELRIWDTVQHRTVSSSWVHSA---------AHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 19 ~~v~~~~~s~~-~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
..+..|.-++. ..++|+|+.. ..+.|||++..+.+ +.+..- +-.++++.|.+......|++++.-+
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h 226 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH 226 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCccccceeeeeeccceecCCCCCceEEEEecce
Confidence 44556666663 3466779988 89999999977444 332211 1236788888822278999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 166 (270)
.+++||.+.++ +|+.++......... +...|.+..++
T Consensus 227 qvR~YDt~~qR---RPV~~fd~~E~~is~--------------------------------------~~l~p~gn~Iy-- 263 (412)
T KOG3881|consen 227 QVRLYDTRHQR---RPVAQFDFLENPISS--------------------------------------TGLTPSGNFIY-- 263 (412)
T ss_pred eEEEecCcccC---cceeEeccccCccee--------------------------------------eeecCCCcEEE--
Confidence 99999999765 566655444333222 23557777554
Q ss_pred ecCCCceEEEEeCCCcceeee-eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 167 AGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
+|..-+.+..||++.++.... +. | ..+.+.++. .+|..+ +|++++-|..|+|+|+.+ .+++
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~k--------g----~tGsirsih-~hp~~~----~las~GLDRyvRIhD~kt-rkll 325 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLK--------G----ITGSIRSIH-CHPTHP----VLASCGLDRYVRIHDIKT-RKLL 325 (412)
T ss_pred EecccchhheecccCceeeccccC--------C----ccCCcceEE-EcCCCc----eEEeeccceeEEEeeccc-chhh
Confidence 566789999999999887766 44 2 456777787 888543 999999999999999998 5554
Q ss_pred eeeeccCCCeeEEEeecC
Q 024245 246 TAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 246 ~~~~~~~~~v~~~~~s~~ 263 (270)
...- -...+++|-+.++
T Consensus 326 ~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 326 HKVY-VKSRLTFILLRDD 342 (412)
T ss_pred hhhh-hhccccEEEecCC
Confidence 4332 2456677777554
No 224
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4e-12 Score=95.99 Aligned_cols=171 Identities=17% Similarity=0.143 Sum_probs=119.0
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC---C-EEE-EEe
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL---N-KVI-SQG 83 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~l~-s~~ 83 (270)
..+.....|.+.|.+|.|+|||++|++-+.| ..+||+++++.+++.......+.....+.|+. ++ . +++ ...
T Consensus 177 ~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~ 253 (398)
T KOG0771|consen 177 LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQF 253 (398)
T ss_pred hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc--cCCCceEEEEEecC
Confidence 4455666799999999999999999999999 89999999997777665333335567778877 53 2 233 333
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCCC
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEG 160 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~ 160 (270)
.-+.|+.||+..-.... ..... .....++. ++.+++|
T Consensus 254 ~~~~v~~~~~~~w~~~~--~l~~~--------------------------------------~~~~~~~siSsl~VS~dG 293 (398)
T KOG0771|consen 254 PGGGVRLCDISLWSGSN--FLRLR--------------------------------------KKIKRFKSISSLAVSDDG 293 (398)
T ss_pred CCCceeEEEeeeecccc--ccchh--------------------------------------hhhhccCcceeEEEcCCC
Confidence 44567777764322100 00000 00011111 6688999
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+.+. -|+.||.|-|++..+.+.++-.+. .| ...++.+. |+|+. + ++++.+.|..+.|..+.-
T Consensus 294 kf~A--lGT~dGsVai~~~~~lq~~~~vk~-------aH----~~~VT~lt-F~Pds---r-~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 294 KFLA--LGTMDGSVAIYDAKSLQRLQYVKE-------AH----LGFVTGLT-FSPDS---R-YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEE--EeccCCcEEEEEeceeeeeEeehh-------hh----eeeeeeEE-EcCCc---C-cccccccCCceeEEEEee
Confidence 8544 477799999999999998888875 56 45889998 99963 3 889999998888887654
No 225
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.42 E-value=1.4e-10 Score=94.37 Aligned_cols=210 Identities=12% Similarity=0.084 Sum_probs=127.7
Q ss_pred CCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccc--eecccceEEE
Q 024245 39 GGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT--IKTNSYHFCK 115 (270)
Q Consensus 39 dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~ 115 (270)
++.+.||+++.. .+...+... ..|.++.|+|. +.++++.|+.+|.|.+||++.+......... ...+......
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~---s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESP---SEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA 296 (555)
T ss_pred CceEEEEecCCCCCceEEEecC---CceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence 347999999876 344444433 66999999997 5589999999999999999987652111111 2222322222
Q ss_pred EeeccCCc---cceecCCCCceEEEeccCceeeecc------------CCCCC---eEecCCCCeEEEEecCCCceEEEE
Q 024245 116 LSLVKEPY---ANAKQANEPKDCYEREVGETVDTDS------------LCDSK---DDVPAEGPKYMAVAGEQLSEVEIW 177 (270)
Q Consensus 116 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~---~~~s~~~~~~~~~~~~~d~~i~iw 177 (270)
+....... .......+.+..|+++......... ..... ++|.+...+.++ .|+++|.|.--
T Consensus 297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi-VGTe~G~v~~~ 375 (555)
T KOG1587|consen 297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI-VGTEEGKVYKG 375 (555)
T ss_pred EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE-EEcCCcEEEEE
Confidence 22222211 2333446666677766543321110 11111 788888877776 47788988763
Q ss_pred eCCCccee--eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCe
Q 024245 178 DLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPG 255 (270)
Q Consensus 178 d~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 255 (270)
.....+.- ..++. ..+| ....+.+.++. ++|-.. . .+++++ |.+|+||.......|+..+..+...|
T Consensus 376 ~r~g~~~~~~~~~~~-----~~~~-~~h~g~v~~v~-~nPF~~--k-~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v 444 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKG-----HSTF-ITHIGPVYAVS-RNPFYP--K-NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYV 444 (555)
T ss_pred eccCCcccccccccc-----cccc-cccCcceEeee-cCCCcc--c-eeeeec-cceeEeccccCCCCcchhhhhcccee
Confidence 33222211 11120 0011 22355777887 888633 1 555555 99999999884378888888888889
Q ss_pred eEEEeecCC
Q 024245 256 LECSMWRNP 264 (270)
Q Consensus 256 ~~~~~s~~g 264 (270)
++++|||..
T Consensus 445 ~~vaWSptr 453 (555)
T KOG1587|consen 445 TDVAWSPTR 453 (555)
T ss_pred eeeEEcCcC
Confidence 999999964
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=2.2e-11 Score=89.07 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=77.0
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCc-EEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
..+.+|.+.|.|++.+.+|.++||+|..|+ |+|||..+|+.++++.-......|++|+|+| +..+|+++|..|++++
T Consensus 175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp--~~s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP--NSSWLAVSSDKGTLHI 252 (346)
T ss_pred eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC--CccEEEEEcCCCeEEE
Confidence 467899999999999999999999999997 7899999999999998665557899999999 9999999999999999
Q ss_pred EEccCCcc
Q 024245 91 WDIENGGL 98 (270)
Q Consensus 91 wd~~~~~~ 98 (270)
|.++....
T Consensus 253 F~l~~~~~ 260 (346)
T KOG2111|consen 253 FSLRDTEN 260 (346)
T ss_pred EEeecCCC
Confidence 99987543
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=5.4e-11 Score=96.11 Aligned_cols=196 Identities=15% Similarity=0.073 Sum_probs=107.3
Q ss_pred CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEccCCccCCCCccceecccceEEEE
Q 024245 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (270)
Q Consensus 40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (270)
..|.++|.. +...+.+..+. ..+.+.+|+| +|+.|+..+.+ ..|.+||+.+++... +...++.. ....+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~~-~~~~~ 247 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSP--EPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGSN-SAPAW 247 (427)
T ss_pred cEEEEECCC-CCCceEeccCC--CCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCCc-cceEE
Confidence 467777874 44444444454 5689999999 99988866543 359999998886432 21122111 11222
Q ss_pred eeccCCccceecCCCCceEEEec--cCceeeeccCCC---CC-eEecCCCCeEEEEecCCCceEEEEeC--CCcceeeee
Q 024245 117 SLVKEPYANAKQANEPKDCYERE--VGETVDTDSLCD---SK-DDVPAEGPKYMAVAGEQLSEVEIWDL--NTAERCTRL 188 (270)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~-~~~s~~~~~~~~~~~~~d~~i~iwd~--~~~~~~~~~ 188 (270)
+.++..........+...+|.+. .+.. ..+..+ .. ..|+|||+.++++ +..++...||.+ ..++. ..+
T Consensus 248 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG~~l~f~-s~~~g~~~Iy~~~~~~g~~-~~l 323 (427)
T PRK02889 248 SPDGRTLAVALSRDGNSQIYTVNADGSGL--RRLTQSSGIDTEPFFSPDGRSIYFT-SDRGGAPQIYRMPASGGAA-QRV 323 (427)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCc--EECCCCCCCCcCeEEcCCCCEEEEE-ecCCCCcEEEEEECCCCce-EEE
Confidence 22222222222223344555443 2322 122222 22 7899999987764 444566666654 44432 222
Q ss_pred ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC---cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 265 (270)
... + ....... |+|+ |+ +|+..+.++ .|++||+.+ ++.. .+.. .......+|+|||+
T Consensus 324 t~~------g------~~~~~~~-~SpD---G~-~Ia~~s~~~g~~~I~v~d~~~-g~~~-~lt~-~~~~~~p~~spdg~ 383 (427)
T PRK02889 324 TFT------G------SYNTSPR-ISPD---GK-LLAYISRVGGAFKLYVQDLAT-GQVT-ALTD-TTRDESPSFAPNGR 383 (427)
T ss_pred ecC------C------CCcCceE-ECCC---CC-EEEEEEccCCcEEEEEEECCC-CCeE-EccC-CCCccCceECCCCC
Confidence 210 1 1122345 9994 55 666555443 699999987 4433 3332 23456789999998
Q ss_pred ce
Q 024245 266 TM 267 (270)
Q Consensus 266 ~l 267 (270)
.|
T Consensus 384 ~l 385 (427)
T PRK02889 384 YI 385 (427)
T ss_pred EE
Confidence 76
No 228
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=4.7e-12 Score=111.11 Aligned_cols=197 Identities=13% Similarity=0.199 Sum_probs=142.9
Q ss_pred ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
+.+-..|.++.=+|...+.++|+.||.|++|....++.+..+..... +.|+.+.|+. .|+.+..+..||.+.+|.+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH--QGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc--cCCceeeeccCCceeecccC
Confidence 34567788898899888999999999999999999999888876554 7799999999 99999999999999999987
Q ss_pred CCccCCCCccceecccceEEEEeeccCCcc--ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEec
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYA--NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG 168 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~ 168 (270)
. .|....+.+......+.+..+... .....+.....||..-..........|.. +++.|..+.++ +|
T Consensus 2282 p-----k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qlli--sg 2354 (2439)
T KOG1064|consen 2282 P-----KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLI--SG 2354 (2439)
T ss_pred C-----cceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEE--ec
Confidence 3 334444444444443443332111 22333455666776433322222255655 88889886433 79
Q ss_pred CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
+.+|.|.+||++..++++.++. +. . .. ++++|+..|.++||++.. ...+..+
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~----------------------~~-~---~~-~f~~~ss~g~ikIw~~s~-~~ll~~~ 2406 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA----------------------LD-T---RE-YFVTGSSEGNIKIWRLSE-FGLLHTF 2406 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh----------------------hh-h---hh-eeeccCcccceEEEEccc-cchhhcC
Confidence 9999999999999888888871 22 1 11 999999999999999998 4555555
Q ss_pred e
Q 024245 249 K 249 (270)
Q Consensus 249 ~ 249 (270)
.
T Consensus 2407 p 2407 (2439)
T KOG1064|consen 2407 P 2407 (2439)
T ss_pred c
Confidence 4
No 229
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=3.5e-11 Score=100.96 Aligned_cols=202 Identities=15% Similarity=0.213 Sum_probs=131.5
Q ss_pred EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 101 (270)
.-++|.....+|++++.-..|+|||.......+.+..... ..|+++.-+-. .|+.+++|..||.|++||.+..... .
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~d-s 1245 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPD-S 1245 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeeccccc-CCceEEEeecCCceEEeecccCCcc-c
Confidence 4456777444555555578999999998888877765543 56777776553 4699999999999999999865432 1
Q ss_pred Cccceecccce--EEEEeeccCCcc--ceecCCCCceEEEeccCcee-eeccC-----C--CCCeEecCCCCeEEEEecC
Q 024245 102 PSLTIKTNSYH--FCKLSLVKEPYA--NAKQANEPKDCYEREVGETV-DTDSL-----C--DSKDDVPAEGPKYMAVAGE 169 (270)
Q Consensus 102 ~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~-----~--~~~~~~s~~~~~~~~~~~~ 169 (270)
.+...+.+... +...++...... ......+.+.+||++..... ..... | +..+..++..+ ++ ++|+
T Consensus 1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-ii-AsGs 1323 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-II-ASGS 1323 (1387)
T ss_pred cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-ee-eecC
Confidence 22223333322 444444443333 44555677788998874211 11111 2 23377777776 33 4777
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
. +.|+||++. |+.+..++.. .+......+.+.+++ |+|... ++|+|+.|..|.||....
T Consensus 1324 ~-q~ikIy~~~-G~~l~~~k~n-----~~F~~q~~gs~scL~-FHP~~~----llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1324 A-QLIKIYSLS-GEQLNIIKYN-----PGFMGQRIGSVSCLA-FHPHRL----LLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred c-ceEEEEecC-hhhhcccccC-----cccccCcCCCcceee-ecchhH----hhhhccCCceEEEeecCC
Confidence 5 999999997 6655555421 134344556678888 999633 899999999999998776
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=2e-09 Score=84.69 Aligned_cols=234 Identities=10% Similarity=0.096 Sum_probs=132.4
Q ss_pred ccEEEEEEeCCCCEEEEecC----CCcEEEEeCCCC--c--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEE
Q 024245 19 ASVTDVCFHQTKPILFAGTT----GGELRIWDTVQH--R--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVK 89 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~----dg~i~vwd~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~ 89 (270)
.....++++|++++|++..+ ++.|..|++... + .+....... .....++++| ++++|+++. .+|.|.
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~~p~~i~~~~--~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG--SSPCHIAVDP--DGRFLYVANYGGGSVS 112 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS--SCEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC--CCcEEEEEec--CCCEEEEEEccCCeEE
Confidence 34567889999999988866 578999998764 2 333333222 4467899999 989988776 589999
Q ss_pred EEEccCCccCCCCcccee----------cccceEEEEeeccCCccceecCCCC--ceEEEeccCc--eee----eccCCC
Q 024245 90 CWDIENGGLSSNPSLTIK----------TNSYHFCKLSLVKEPYANAKQANEP--KDCYEREVGE--TVD----TDSLCD 151 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~----~~~~~~ 151 (270)
++++.............. ....+.-.+.+............+. +..+++.... ... ....+.
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 999987422211111110 0111112222222222333333333 3445555443 111 111222
Q ss_pred CC--eEecCCCCeEEEEecCCCceEEEEeCC--Ccc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245 152 SK--DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (270)
Q Consensus 152 ~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~--~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (270)
.. ++|+|+++++++ ....+++|.++++. .+. .+..+..-. .+. ........+. ++| ||+++++
T Consensus 193 GPRh~~f~pdg~~~Yv-~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~----~~~--~~~~~~~~i~-isp---dg~~lyv 261 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYV-VNELSNTVSVFDYDPSDGSLTEIQTISTLP----EGF--TGENAPAEIA-ISP---DGRFLYV 261 (345)
T ss_dssp SEEEEEE-TTSSEEEE-EETTTTEEEEEEEETTTTEEEEEEEEESCE----TTS--CSSSSEEEEE-E-T---TSSEEEE
T ss_pred CCcEEEEcCCcCEEEE-ecCCCCcEEEEeecccCCceeEEEEeeecc----ccc--cccCCceeEE-Eec---CCCEEEE
Confidence 22 999999998887 46678999999998 332 233332100 011 0112455676 998 5665666
Q ss_pred EecCCCcEEEEEcCCC-Cc--ceeeeeccCCCeeEEEeecCCCce
Q 024245 226 AGYEDGSILVWDIRNP-GI--PLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 226 ~~~~dg~i~vwd~~~~-~~--~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+...++.|.+|++... +. .+..+.........++++|+|++|
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence 6667889999999432 22 333343334568999999999986
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.2e-10 Score=94.38 Aligned_cols=160 Identities=14% Similarity=0.059 Sum_probs=99.9
Q ss_pred CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEEccCCccCCCCccceecccceEEEE
Q 024245 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (270)
Q Consensus 40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (270)
..|.++|... ...+.+..+. ..+.+.+|+| +|+.|+..+. +..|.+||+.+++... +..... ..
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~--~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~--l~~~~g---~~--- 248 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGS--SLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL--VGNFPG---MT--- 248 (435)
T ss_pred eEEEEECCCC-CCcEEEecCC--CCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE--eecCCC---cc---
Confidence 4788999864 4444555555 5699999999 9998886653 4689999998775321 110000 00
Q ss_pred eeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCC
Q 024245 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG 194 (270)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~ 194 (270)
...+|+|||+.++++ .+.++ .|.+||+.+++.. .+.
T Consensus 249 -----------------------------------~~~~~SPDG~~la~~-~~~~g~~~Iy~~d~~~~~~~-~Lt----- 286 (435)
T PRK05137 249 -----------------------------------FAPRFSPDGRKVVMS-LSQGGNTDIYTMDLRSGTTT-RLT----- 286 (435)
T ss_pred -----------------------------------cCcEECCCCCEEEEE-EecCCCceEEEEECCCCceE-Ecc-----
Confidence 004599999887654 33444 4777898876643 344
Q ss_pred CCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCC--cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+ ........ |+|+ |+ .|+..+ .+| .|++||+.. ++ ...+..+...+....|+|||+.|.
T Consensus 287 ---~~----~~~~~~~~-~spD---G~-~i~f~s~~~g~~~Iy~~d~~g-~~-~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 287 ---DS----PAIDTSPS-YSPD---GS-QIVFESDRSGSPQLYVMNADG-SN-PRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred ---CC----CCccCcee-EcCC---CC-EEEEEECCCCCCeEEEEECCC-CC-eEEeecCCCcccCeEECCCCCEEE
Confidence 22 12334455 9995 55 555444 344 688888775 43 344443455677789999998763
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.9e-10 Score=91.87 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=97.3
Q ss_pred CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe---CCCcEEEEEccCCccCCCCccceecccceEEEE
Q 024245 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG---RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (270)
Q Consensus 40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (270)
..|.+||........ +..+. ..+.+.+|+| +|+.|+..+ .+..|.+||+.+++... +..++....
T Consensus 179 ~~l~~~d~dg~~~~~-lt~~~--~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~----- 246 (429)
T PRK03629 179 YELRVSDYDGYNQFV-VHRSP--QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNG----- 246 (429)
T ss_pred eeEEEEcCCCCCCEE-eecCC--CceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcC-----
Confidence 379999987554433 33343 5699999999 999888554 23478899988765321 111111100
Q ss_pred eeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCC
Q 024245 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG 194 (270)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~ 194 (270)
...|+|||+.++++. +.+| .|++||+.+++......
T Consensus 247 ------------------------------------~~~~SPDG~~La~~~-~~~g~~~I~~~d~~tg~~~~lt~----- 284 (429)
T PRK03629 247 ------------------------------------APAFSPDGSKLAFAL-SKTGSLNLYVMDLASGQIRQVTD----- 284 (429)
T ss_pred ------------------------------------CeEECCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEccC-----
Confidence 045999999877643 2334 59999998776543322
Q ss_pred CCCCcccCCCceeeeeeecCCCCCCCceEEEEecC-CCc--EEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGS--ILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+ ........ |+|+ |+ .|+..+. +|. |+++|+.+ ++ ...+..........+|+|||++|.
T Consensus 285 ----~----~~~~~~~~-wSPD---G~-~I~f~s~~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 285 ----G----RSNNTEPT-WFPD---SQ-NLAYTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred ----C----CCCcCceE-ECCC---CC-EEEEEeCCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEE
Confidence 1 12344555 9995 55 5555544 454 44456655 33 344444444567789999998863
No 233
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=5e-10 Score=81.30 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=120.0
Q ss_pred cccEEEEEEeC---CCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCC----cceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 18 RASVTDVCFHQ---TKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 18 ~~~v~~~~~s~---~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
++.+..|.|.. +|. .++-+..+|.|.++..........+.+-... ....++.|++ .+..++++..+|.+.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSIS 146 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec--cCceEEEEcCCCcEE
Confidence 45567777764 455 5666777889999887655444444332110 1135778888 778898888899888
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 169 (270)
+-+.....+.. ....+.+....- . ..|+...+.++. +|+
T Consensus 147 ~v~~t~~~le~--vq~wk~He~E~W--t------------------------------------a~f~~~~pnlvy-tGg 185 (339)
T KOG0280|consen 147 GVYETEMVLEK--VQTWKVHEFEAW--T------------------------------------AKFSDKEPNLVY-TGG 185 (339)
T ss_pred EEecceeeeee--cccccccceeee--e------------------------------------eecccCCCceEE-ecC
Confidence 55544433322 222233322211 1 234444455554 899
Q ss_pred CCceEEEEeCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 170 QLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 170 ~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
+|+.+..||+| .++.+..-.. -| ..-+.++. -+|. .+. +++||++|..|++||.|+.++|+..-
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~k-------vH----~~GV~SI~-ss~~--~~~-~I~TGsYDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSK-------VH----TSGVVSIY-SSPP--KPT-YIATGSYDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred CCceEEEEEecCCcceeeecce-------ee----ecceEEEe-cCCC--CCc-eEEEeccccceeeeehhcccCccccC
Confidence 99999999999 3344433221 33 34566666 5553 344 99999999999999999879988776
Q ss_pred eccCCCeeEEEeecCC
Q 024245 249 KVHLEPGLECSMWRNP 264 (270)
Q Consensus 249 ~~~~~~v~~~~~s~~g 264 (270)
+. .+.|+.+.++|.-
T Consensus 251 ~v-~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 251 KV-GGGVWRIKHHPEI 265 (339)
T ss_pred cc-ccceEEEEecchh
Confidence 63 5789999998853
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.1e-10 Score=92.95 Aligned_cols=198 Identities=12% Similarity=0.009 Sum_probs=109.6
Q ss_pred CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEccCCccCCCCccceecccceEEEE
Q 024245 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (270)
Q Consensus 40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (270)
..|.+||.... ..+.+..+. ..+.+.+|+| +|+.|+..+.+ ..|.+||+.+++... +....... ....+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~--~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~~g~~-~~~~~ 255 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSA--EPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL--VASFRGIN-GAPSF 255 (433)
T ss_pred EEEEEECCCCC-CceEeecCC--CccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE--eccCCCCc-cCceE
Confidence 46999998644 334454444 5689999999 99998877643 469999998876422 22222111 11122
Q ss_pred eeccCCccceecCCC--CceEEEeccCceeeeccCC-CC-CeEecCCCCeEEEEecCCCce--EEEEeCCCcceeeeecc
Q 024245 117 SLVKEPYANAKQANE--PKDCYEREVGETVDTDSLC-DS-KDDVPAEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQ 190 (270)
Q Consensus 117 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~-~~~~s~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~ 190 (270)
+..+..........+ ....+++..++........ .. ..+|+|||+.++++ +..+|. |.++|+.+++.. .+..
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~-sd~~g~~~iy~~dl~~g~~~-~lt~ 333 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFT-SDRGGRPQIYRVAASGGSAE-RLTF 333 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEE-ECCCCCceEEEEECCCCCeE-Eeec
Confidence 222222111111222 2444566665533221111 11 18999999987764 333444 666777666533 2321
Q ss_pred CcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCC--cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
. +. ...... |+|+ |+ +|+..+ .++ .|.+||+.+ ++.. .+. +........|+|||++|
T Consensus 334 ~------g~------~~~~~~-~SpD---G~-~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 334 Q------GN------YNARAS-VSPD---GK-KIAMVHGSGGQYRIAVMDLST-GSVR-TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred C------CC------CccCEE-ECCC---CC-EEEEEECCCCceeEEEEECCC-CCeE-ECC-CCCCCCCceECCCCCEE
Confidence 0 11 223455 9994 55 555443 333 699999987 5443 333 22345678999999875
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=6.2e-11 Score=93.32 Aligned_cols=191 Identities=15% Similarity=0.174 Sum_probs=126.5
Q ss_pred EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 101 (270)
..|+++.-..-|+.++....|+-.+++.|+.+..+.... +.++++..++ ...+|++|+.+|.|..||.+......
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~--~~lN~v~in~--~hgLla~Gt~~g~VEfwDpR~ksrv~- 211 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS--GELNVVSINE--EHGLLACGTEDGVVEFWDPRDKSRVG- 211 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEcccccccccccccc--ccceeeeecC--ccceEEecccCceEEEecchhhhhhe-
Confidence 345555433334444445579999999999998888777 5699999999 76788999999999999999876543
Q ss_pred CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (270)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~ 181 (270)
.+..... +...+... ....-..+.|+.+|-.+ ++|..+|.+.|||+++
T Consensus 212 ---~l~~~~~------v~s~pg~~---------------------~~~svTal~F~d~gL~~--aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 212 ---TLDAASS------VNSHPGGD---------------------AAPSVTALKFRDDGLHV--AVGTSTGSVLIYDLRA 259 (703)
T ss_pred ---eeecccc------cCCCcccc---------------------ccCcceEEEecCCceeE--EeeccCCcEEEEEccc
Confidence 1111100 00000000 00000015677777443 3577799999999999
Q ss_pred cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEee
Q 024245 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMW 261 (270)
Q Consensus 182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s 261 (270)
.+++..-. |.. .-.+..+. |.+. +++..+++. ....++|||-.+ +++...+.. ...++.+++-
T Consensus 260 ~~pl~~kd---------h~~--e~pi~~l~-~~~~--~~q~~v~S~-Dk~~~kiWd~~~-Gk~~asiEp-t~~lND~C~~ 322 (703)
T KOG2321|consen 260 SKPLLVKD---------HGY--ELPIKKLD-WQDT--DQQNKVVSM-DKRILKIWDECT-GKPMASIEP-TSDLNDFCFV 322 (703)
T ss_pred CCceeecc---------cCC--ccceeeec-cccc--CCCceEEec-chHHhhhccccc-CCceeeccc-cCCcCceeee
Confidence 98876543 432 34566676 8876 344255555 456899999998 888888874 5569999999
Q ss_pred cCCCc
Q 024245 262 RNPIT 266 (270)
Q Consensus 262 ~~g~~ 266 (270)
|++-+
T Consensus 323 p~sGm 327 (703)
T KOG2321|consen 323 PGSGM 327 (703)
T ss_pred cCCce
Confidence 87543
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.31 E-value=5e-12 Score=92.98 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=83.7
Q ss_pred EEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCCC
Q 024245 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSN 101 (270)
Q Consensus 23 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~ 101 (270)
-++|||+|+++|++++- .+.|-|.++-+..+.+..- +.|.-+.|.. +..+++ ....|+.|.+|++...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~c- 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYC- 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeec--cceeeeeeeeccceEEEEEeecceeEE-
Confidence 46899999999999876 7899998887766665543 4488999998 766655 56788899999998664321
Q ss_pred CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (270)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~ 181 (270)
.+......... ++|||||+.++. +.+.|-.|.+|.+.+
T Consensus 86 ---kIdeg~agls~--------------------------------------~~WSPdgrhiL~-tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 86 ---KIDEGQAGLSS--------------------------------------ISWSPDGRHILL-TSEFDLRITVWSLNT 123 (447)
T ss_pred ---EeccCCCccee--------------------------------------eeECCCcceEee-eecceeEEEEEEecc
Confidence 22221111110 569999998887 566799999999987
Q ss_pred cceee
Q 024245 182 AERCT 186 (270)
Q Consensus 182 ~~~~~ 186 (270)
.+...
T Consensus 124 ~~~~~ 128 (447)
T KOG4497|consen 124 QKGYL 128 (447)
T ss_pred ceeEE
Confidence 76544
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=7.6e-10 Score=87.37 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=134.0
Q ss_pred cccccEEEEEEeCCCCE-EEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 16 GHRASVTDVCFHQTKPI-LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
+|...-+.|..+|||+| +|+|.+--.|++||+.+-... |.-|.....|.-.-.+. |-..++--..|.+|.+-..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEecc--chhhheEeecCceeeehhhc
Confidence 37788899999999996 577888899999999864433 44444434444444444 44455555667776553321
Q ss_pred CCccCCCCccceecccceEEEEeec-cCCccceecCCCCceEEEeccCceeeeccC--CCCC-eEecCCCCeEEEEecCC
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLV-KEPYANAKQANEPKDCYEREVGETVDTDSL--CDSK-DDVPAEGPKYMAVAGEQ 170 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~s~~~~~~~~~~~~~ 170 (270)
|.... ..++. ....+... ++......+.+..+..++++.++-+...-. +... +.+++... | +++|..
T Consensus 125 -G~hy~---~RIP~---~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-L-la~Gt~ 195 (703)
T KOG2321|consen 125 -GRHYR---TRIPK---FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-L-LACGTE 195 (703)
T ss_pred -Ceeee---eecCc---CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc-e-EEeccc
Confidence 11100 00000 00011111 112223334445555567776664432211 1111 66666654 4 447888
Q ss_pred CceEEEEeCCCcceeeeeccCcCCCCCCccc-CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee-
Q 024245 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM- 248 (270)
Q Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~- 248 (270)
+|.|..||.++...+.++..... +..|.. .....++++. |+. +|- .+++|..+|.|.|||+++ .+|+..-
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~--v~s~pg~~~~~svTal~-F~d---~gL-~~aVGts~G~v~iyDLRa-~~pl~~kd 267 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASS--VNSHPGGDAAPSVTALK-FRD---DGL-HVAVGTSTGSVLIYDLRA-SKPLLVKD 267 (703)
T ss_pred CceEEEecchhhhhheeeecccc--cCCCccccccCcceEEE-ecC---Cce-eEEeeccCCcEEEEEccc-CCceeecc
Confidence 99999999999887777763211 111211 1223477887 985 354 899999999999999999 5554433
Q ss_pred eccCCCeeEEEeecC
Q 024245 249 KVHLEPGLECSMWRN 263 (270)
Q Consensus 249 ~~~~~~v~~~~~s~~ 263 (270)
.+..-+|..+.|.+.
T Consensus 268 h~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 268 HGYELPIKKLDWQDT 282 (703)
T ss_pred cCCccceeeeccccc
Confidence 334568889999775
No 238
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=5.9e-10 Score=83.86 Aligned_cols=230 Identities=11% Similarity=0.093 Sum_probs=143.8
Q ss_pred ccccEEEEEEeCCCC--EEEEecCCCcEEEEeCCCCceeEEE----eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 17 HRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 17 h~~~v~~~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
-...|..++|.-+++ .+...+.|..+....+....+...+ ..+....+|..++... ..|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d----g~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD----GTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC----CEEEEEecCCcEEE
Confidence 345678888887554 5555556777877777766555443 2222225677777655 68899999999999
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCccceecCC----CCceEEEeccCceeeeccCCCCC------------e
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN----EPKDCYEREVGETVDTDSLCDSK------------D 154 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------------~ 154 (270)
|..+.+.....++..+........ +..........+..| ....+|+++..+.+-........ +
T Consensus 130 ~~~k~~d~hss~l~~la~g~g~~~-~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATGPGLYD-VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred EeccCCccccccceeeecCCceee-eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 999866533333333333322211 221111122222222 23456887766433221111111 5
Q ss_pred EecCCC-CeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245 155 DVPAEG-PKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (270)
Q Consensus 155 ~~s~~~-~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~ 232 (270)
.|-+.. .+-++ ++..-+.+++||.+.++ ++.++.. ....++++. .-|+ |. ++++|..-|.
T Consensus 209 ~Fl~g~~~~~fa-t~T~~hqvR~YDt~~qRRPV~~fd~------------~E~~is~~~-l~p~---gn-~Iy~gn~~g~ 270 (412)
T KOG3881|consen 209 RFLEGSPNYKFA-TITRYHQVRLYDTRHQRRPVAQFDF------------LENPISSTG-LTPS---GN-FIYTGNTKGQ 270 (412)
T ss_pred eecCCCCCceEE-EEecceeEEEecCcccCcceeEecc------------ccCcceeee-ecCC---Cc-EEEEecccch
Confidence 666652 23333 55667999999999765 6666653 234566666 7775 44 8999999999
Q ss_pred EEEEEcCCCCcceeeeeccCCCeeEEEeecCCCceec
Q 024245 233 ILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMSE 269 (270)
Q Consensus 233 i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls~ 269 (270)
+..+|++...-....+++..+.|.+|..+|.+.+|++
T Consensus 271 l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las 307 (412)
T KOG3881|consen 271 LAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLAS 307 (412)
T ss_pred hheecccCceeeccccCCccCCcceEEEcCCCceEEe
Confidence 9999999943444458899999999999999888763
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=5.4e-11 Score=99.39 Aligned_cols=150 Identities=14% Similarity=0.183 Sum_probs=109.5
Q ss_pred EEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCcc
Q 024245 25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSL 104 (270)
Q Consensus 25 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 104 (270)
.++++.-++++|+.-+.|.+|+....+.-..+.+|. +.|.++.|+. +|.++++.|+|.++++|++++.+... .
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHe--G~iF~i~~s~--dg~~i~s~SdDRsiRlW~i~s~~~~~---~ 212 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHE--GSIFSIVTSL--DGRYIASVSDDRSIRLWPIDSREVLG---C 212 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcceecccC--CceEEEEEcc--CCcEEEEEecCcceeeeecccccccC---c
Confidence 345666699999999999999987444333578898 6699999999 99999999999999999999986532 0
Q ss_pred ceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcce
Q 024245 105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER 184 (270)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~ 184 (270)
..-++... .|+ ++|.|+ .++ +.+.|-+.++|+.. ++.
T Consensus 213 ~~fgHsaR----------------------vw~----------------~~~~~n---~i~-t~gedctcrvW~~~-~~~ 249 (967)
T KOG0974|consen 213 TGFGHSAR----------------------VWA----------------CCFLPN---RII-TVGEDCTCRVWGVN-GTQ 249 (967)
T ss_pred ccccccce----------------------eEE----------------EEeccc---eeE-EeccceEEEEEecc-cce
Confidence 11111111 111 346666 233 67789999999766 555
Q ss_pred eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 185 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+..+. +|. ...++.+. ..+... .++|++.||.+++||+..
T Consensus 250 l~~y~--------~h~---g~~iw~~~-~~~~~~----~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 250 LEVYD--------EHS---GKGIWKIA-VPIGVI----IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ehhhh--------hhh---hcceeEEE-EcCCce----EEEeeccCcchhhhhhhc
Confidence 55676 673 34567776 766433 999999999999999876
No 240
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.8e-11 Score=95.87 Aligned_cols=172 Identities=12% Similarity=0.125 Sum_probs=104.2
Q ss_pred eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCcccee-cccceEEEEeeccCCccc---eec
Q 024245 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYAN---AKQ 128 (270)
Q Consensus 53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~ 128 (270)
.+++.+|. +.|.+++|+. +|.+|++|+.|-.+.|||.-..+... .+. ++...+-+..+....... ..+
T Consensus 43 E~eL~GH~--GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kllh----sI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 43 EAELTGHT--GCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLLH----SISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hhhhcccc--ceecceeecC--CCCEEeecCCcceEEeecchhcceee----eeecccccceeEEeeeccCCCeEEEecc
Confidence 35678898 7799999999 99999999999999999998655432 332 233333333333322222 233
Q ss_pred CCCCceEEEeccCc---------eeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCC
Q 024245 129 ANEPKDCYEREVGE---------TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 195 (270)
Q Consensus 129 ~~~~~~~~~~~~~~---------~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 195 (270)
....+.++|+...+ ....-...|.. ++..|+++..+. ++++||+|+-+|++.......-.. +...
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw-sasEDGtirQyDiREph~c~p~~~-~~~~ 192 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW-SASEDGTIRQYDIREPHVCNPDED-CPSI 192 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE-EecCCcceeeecccCCccCCcccc-ccHH
Confidence 34445556665421 12223334444 888899987776 567899999999986431111000 0000
Q ss_pred CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
.... ........++. .+|..+ .+|+.|+.|--.++||.+
T Consensus 193 l~ny-~~~lielk~lt-isp~rp---~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 193 LVNY-NPQLIELKCLT-ISPSRP---YYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHHh-chhhheeeeee-ecCCCC---ceEEecCCCchhhhhhhh
Confidence 0000 00122344565 888633 399999999999999944
No 241
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=2e-10 Score=84.24 Aligned_cols=228 Identities=16% Similarity=0.228 Sum_probs=132.2
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-----eeEEEeecCC----------CcceEEEEEeeCCCCCEEEEE
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~ 82 (270)
.+.|+++.|...|.||++|...|.|.++.-+... ....+++|.. +..|..+.|......+.++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999865422 2223444432 134888999873334567777
Q ss_pred eCCCcEEEEEccCCccCC---------------CCccc------------------------eecccceEEEEeeccCCc
Q 024245 83 GRDGTVKCWDIENGGLSS---------------NPSLT------------------------IKTNSYHFCKLSLVKEPY 123 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~---------------~~~~~------------------------~~~~~~~~~~~~~~~~~~ 123 (270)
+.|++|++|.+....+.. -|+.. ...++.....+++.....
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 889999999986542110 00000 011222233333333333
Q ss_pred cceecCCCCceEEEeccCce--eeeccCCCCC---------eEecCCCCeEEEEecCCCceEEEEeCCCccee----eee
Q 024245 124 ANAKQANEPKDCYEREVGET--VDTDSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TRL 188 (270)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~ 188 (270)
....++.-.+.+|.+.-... -......|.- ..|+|....++..+.+ .|.|++-|+|...+. ..+
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS-kG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS-KGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC-CCcEEehhhhhhhhccCchhhh
Confidence 33333344444555442221 1111222222 6788988888877766 699999999954321 111
Q ss_pred ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (270)
Q Consensus 189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 252 (270)
....-+.....-......+..+. |+| +|+ |+++-+. -+|++||++....|+.++.-|.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~k-Fs~---ngr-yIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFK-FSD---NGR-YILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhccCcccchhHHHHhhhhcceE-EcC---CCc-EEEEecc-ceEEEEecccccCCceeechHH
Confidence 11000000000012334566777 998 466 7777654 4899999999888998886553
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=8.3e-10 Score=87.18 Aligned_cols=174 Identities=15% Similarity=0.095 Sum_probs=117.2
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEe------e------------CCCCCEEEEEeCCCcE
Q 024245 28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATG------P------------SIGLNKVISQGRDGTV 88 (270)
Q Consensus 28 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~------~------------~~~~~~l~s~~~d~~i 88 (270)
|.+.++|....||.+++||..+++..+.|....+ .+...+..|. | ..+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4566899999999999999999887777643211 1334455552 1 1122356667777888
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 168 (270)
.+|++..+++.. .+.-..+...... +.++.+-..+ .++
T Consensus 83 ~~ys~~~g~it~--~~st~~h~~~v~~--------------------------------------~~~~~~~~ci--yS~ 120 (541)
T KOG4547|consen 83 LLYSVAGGEITA--KLSTDKHYGNVNE--------------------------------------ILDAQRLGCI--YSV 120 (541)
T ss_pred EEEEecCCeEEE--EEecCCCCCccee--------------------------------------eecccccCce--Eec
Confidence 888888776533 1111111111111 1122222223 366
Q ss_pred CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
+.|..+..|+..+.+.+..+.. ....+.+++ .+|+ |. .+++++ +.|++||+++ ++.+..|
T Consensus 121 ~ad~~v~~~~~~~~~~~~~~~~------------~~~~~~sl~-is~D---~~-~l~~as--~~ik~~~~~~-kevv~~f 180 (541)
T KOG4547|consen 121 GADLKVVYILEKEKVIIRIWKE------------QKPLVSSLC-ISPD---GK-ILLTAS--RQIKVLDIET-KEVVITF 180 (541)
T ss_pred CCceeEEEEecccceeeeeecc------------CCCccceEE-EcCC---CC-EEEecc--ceEEEEEccC-ceEEEEe
Confidence 6799999999999998888874 234566676 8885 55 788876 4799999999 9999999
Q ss_pred eccCCCeeEEEeecC
Q 024245 249 KVHLEPGLECSMWRN 263 (270)
Q Consensus 249 ~~~~~~v~~~~~s~~ 263 (270)
.+|.++|.+++|--+
T Consensus 181 tgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 181 TGHGSPVRTLSFTTL 195 (541)
T ss_pred cCCCcceEEEEEEEe
Confidence 999999999999876
No 243
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.24 E-value=1.7e-11 Score=63.60 Aligned_cols=38 Identities=29% Similarity=0.711 Sum_probs=36.3
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEe
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 46 (270)
++++++++|++.|++|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 47889999999999999999999999999999999997
No 244
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=2.6e-11 Score=100.19 Aligned_cols=215 Identities=15% Similarity=0.227 Sum_probs=143.7
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC-
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG- 86 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~- 86 (270)
+..++++.|...-+|++|+-+.+.|+.|+-.|.|+++++.+|.....+.+|. ++|+-+.=+. +|..+++.+. ..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~--SavT~vePs~--dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ--SAVTLVEPSV--DGSTQLTSSSSSSP 1167 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc--cccccccccC--CcceeeeeccccCc
Confidence 4677889999999999999999999999999999999999999999999999 6699888777 8887765443 33
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC-------eEecC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK-------DDVPA 158 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~ 158 (270)
-..+|++.+.- .+..++... ....+..+.... ....+....+||+.+.......+.+... ..|+|
T Consensus 1168 lsaLW~~~s~~---~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1168 LSALWDASSTG---GPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred hHHHhcccccc---Ccccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 46689987521 111122111 112222222222 2223345567899988877665544322 78999
Q ss_pred CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
+...++ .|| .+||++..+.++.|. .......+ .|+|.+ . .++.-+ -|||+
T Consensus 1241 ~D~LIl-----ndG--vLWDvR~~~aIh~FD--------~ft~~~~G------~FHP~g---~-eVIINS-----EIwD~ 1290 (1516)
T KOG1832|consen 1241 CDTLIL-----NDG--VLWDVRIPEAIHRFD--------QFTDYGGG------GFHPSG---N-EVIINS-----EIWDM 1290 (1516)
T ss_pred CcceEe-----eCc--eeeeeccHHHHhhhh--------hheecccc------cccCCC---c-eEEeec-----hhhhh
Confidence 997444 356 589999988888876 22211111 299963 3 566665 48999
Q ss_pred CCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 239 RNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
++ .+.+.....- .-..+.|+..|.+|
T Consensus 1291 RT-F~lLh~VP~L--dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1291 RT-FKLLHSVPSL--DQCAVTFNSTGDVM 1316 (1516)
T ss_pred HH-HHHHhcCccc--cceEEEeccCccch
Confidence 99 6655544432 12456777777654
No 245
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.24 E-value=1.7e-09 Score=80.00 Aligned_cols=94 Identities=9% Similarity=0.052 Sum_probs=63.0
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
++|++|..++.-.....-+.+-+||++..+....+.. ...+.+.. |.|..+ .|+.+.....+
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ-------------k~piraf~-WdP~~p----rL~vctg~srL 385 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ-------------KHPIRAFE-WDPGRP----RLVVCTGKSRL 385 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh-------------ccceeEEE-eCCCCc----eEEEEcCCceE
Confidence 9999999755432333346799999998776666652 23566676 999644 56666666679
Q ss_pred EEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
++|...- ...+.. ....-.|..+.|..+|..|
T Consensus 386 Y~W~psg-~~~V~v-P~~GF~i~~l~W~~~g~~i 417 (447)
T KOG4497|consen 386 YFWAPSG-PRVVGV-PKKGFNIQKLQWLQPGEFI 417 (447)
T ss_pred EEEcCCC-ceEEec-CCCCceeeeEEecCCCcEE
Confidence 9998774 222222 2233578889998888765
No 246
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=3.7e-11 Score=94.60 Aligned_cols=178 Identities=15% Similarity=0.235 Sum_probs=121.2
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
+..+.||+..|+.++--.+.+-+++++.|.+|++|.++.. .+..+++.|. .+|.++.|-. +-..+++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk--k~i~~igfL~--~lr~i~S-- 801 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK--KPIHDIGFLA--DLRSIAS-- 801 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc--Ccccceeeee--ccceeee--
Confidence 5678899999999988778888999999999999998642 3556677787 6799999998 6556654
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCC-CCe
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-GPK 162 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~ 162 (270)
.||-|++||.--++... ++...+.....-. +..-++ .+.
T Consensus 802 cD~giHlWDPFigr~La----q~~dapk~~a~~~------------------------------------ikcl~nv~~~ 841 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLA----QMEDAPKEGAGGN------------------------------------IKCLENVDRH 841 (1034)
T ss_pred ccCcceeecccccchhH----hhhcCcccCCCce------------------------------------eEecccCcch
Confidence 47889999987665432 2211111100000 001111 234
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
++++.++...+|+++|.+..+....++. ......++.+.+++ ..|. |. .++++-..|.|.+.|.++ +
T Consensus 842 iliAgcsaeSTVKl~DaRsce~~~E~kV-------cna~~Pna~~R~ia-Va~~---GN-~lAa~LSnGci~~LDaR~-G 908 (1034)
T KOG4190|consen 842 ILIAGCSAESTVKLFDARSCEWTCELKV-------CNAPGPNALTRAIA-VADK---GN-KLAAALSNGCIAILDARN-G 908 (1034)
T ss_pred heeeeccchhhheeeecccccceeeEEe-------ccCCCCchheeEEE-eccC---cc-hhhHHhcCCcEEEEecCC-C
Confidence 5555556789999999999987776662 11111234555665 6664 43 899999999999999999 6
Q ss_pred cceee
Q 024245 243 IPLTA 247 (270)
Q Consensus 243 ~~~~~ 247 (270)
+.+..
T Consensus 909 ~vINs 913 (1034)
T KOG4190|consen 909 KVINS 913 (1034)
T ss_pred ceecc
Confidence 65553
No 247
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.22 E-value=4.1e-11 Score=91.92 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=126.7
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
.++.++.| ..|..+.|-|.--+|++++..|-+.--|+..|+.+..+.... +.+..++-+| -...+-+|...|+|.
T Consensus 202 ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~--G~~~vm~qNP--~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA--GRTDVMKQNP--YNAVIHLGHSNGTVS 276 (545)
T ss_pred EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC--CccchhhcCC--ccceEEEcCCCceEE
Confidence 34555544 578899999988899999999999999999999999887776 5589999999 556778999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 169 (270)
+|.....+ |+..+-.+...... +++.++|.+++ +.+
T Consensus 277 lWSP~ske----PLvKiLcH~g~V~s--------------------------------------iAv~~~G~YMa--TtG 312 (545)
T KOG1272|consen 277 LWSPNSKE----PLVKILCHRGPVSS--------------------------------------IAVDRGGRYMA--TTG 312 (545)
T ss_pred ecCCCCcc----hHHHHHhcCCCcce--------------------------------------EEECCCCcEEe--ecc
Confidence 99988764 33344333333221 55778887654 445
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC--cceee
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTA 247 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~ 247 (270)
.|..++|||++.-..+.++.. .| ....++ +|- . -+++.+....|.+|.-.-.+ ..-..
T Consensus 313 ~Dr~~kIWDlR~~~ql~t~~t-------p~------~a~~ls-~Sq----k--glLA~~~G~~v~iw~d~~~~s~~~~~p 372 (545)
T KOG1272|consen 313 LDRKVKIWDLRNFYQLHTYRT-------PH------PASNLS-LSQ----K--GLLALSYGDHVQIWKDALKGSGHGETP 372 (545)
T ss_pred cccceeEeeeccccccceeec-------CC------Cccccc-ccc----c--cceeeecCCeeeeehhhhcCCCCCCcc
Confidence 699999999998776666652 12 233343 653 2 34445556689999532211 11111
Q ss_pred eecc--CCCeeEEEeecCC
Q 024245 248 MKVH--LEPGLECSMWRNP 264 (270)
Q Consensus 248 ~~~~--~~~v~~~~~s~~g 264 (270)
+-.| .++|.++.|.|=.
T Consensus 373 Ym~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 373 YMNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred hhhhccCcccccceeccHH
Confidence 1112 3578888887743
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.1e-08 Score=80.99 Aligned_cols=222 Identities=8% Similarity=0.014 Sum_probs=114.8
Q ss_pred ccccEEEEEEeCCCCE---EEEecCC--CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC----
Q 024245 17 HRASVTDVCFHQTKPI---LFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG---- 86 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~---l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~---- 86 (270)
....+..-+|+|||+. +++...+ ..|.+.++..++..+.... . ......+|+| ||+.|+..+. +|
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~--g~~~~p~wSP--DG~~Laf~s~~~g~~di 257 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-Q--GNQLMPTFSP--RKKLLAFISDRYGNPDL 257 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-C--CCccceEECC--CCCEEEEEECCCCCcce
Confidence 4455677899999974 2244444 3578888887765443332 2 3356789999 9988875442 23
Q ss_pred cEEEEEccCCccCCCCcccee-cc--cceEEEEeeccCCccceecCCCCceEEEecc---Cceee-eccCCCC-C-eEec
Q 024245 87 TVKCWDIENGGLSSNPSLTIK-TN--SYHFCKLSLVKEPYANAKQANEPKDCYEREV---GETVD-TDSLCDS-K-DDVP 157 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~-~-~~~s 157 (270)
.+..|++..+.... ...+. .. ......++.++..........+...+|.+.. +.... ....... . ..||
T Consensus 258 ~~~~~~~~~g~~g~--~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 258 FIQSFSLETGAIGK--PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred eEEEeecccCCCCc--ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence 34447766532100 01111 11 1111122222222221111223334444321 11111 1111111 2 8999
Q ss_pred CCCCeEEEEecCC-CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC--CCcEE
Q 024245 158 AEGPKYMAVAGEQ-LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--DGSIL 234 (270)
Q Consensus 158 ~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~--dg~i~ 234 (270)
|||+.++.++... ...|.+||+.+++... +.. + ........ |+| ||+.+++++.. ...|+
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~-------~-----~~~~~~p~-wSp---DG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTT-------S-----PENKESPS-WAI---DSLHLVYSAGNSNESELY 398 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccC-------C-----CCCccceE-ECC---CCCEEEEEECCCCCceEE
Confidence 9999877643321 2479999998877543 331 1 11233455 998 45534444443 35688
Q ss_pred EEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245 235 VWDIRNPGIPLTAMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g 264 (270)
+||+.. ++...... ..+.+...+|+|-.
T Consensus 399 ~vdl~~-g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLIT-KKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCC-CCEEEeec-CCCcccCceecCCC
Confidence 889886 54433333 34567788898854
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.21 E-value=4e-08 Score=76.05 Aligned_cols=218 Identities=9% Similarity=0.039 Sum_probs=119.5
Q ss_pred EeCCCCEEEEecC----------CCcEEEEeCCCCceeEEEeecCCC-----cceEEEEEeeCCCCCEEEEEe-C-CCcE
Q 024245 26 FHQTKPILFAGTT----------GGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPSIGLNKVISQG-R-DGTV 88 (270)
Q Consensus 26 ~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~-d~~i 88 (270)
++|||+.|+.+.. +..|.+||..+.+.+..+.....+ ..-..++++| +|++|+... . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEE
Confidence 8999997776654 788999999999999888743210 1234789999 999988766 3 6899
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEec-cCceeee---ccCCCCC-----eEecC-
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYERE-VGETVDT---DSLCDSK-----DDVPA- 158 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~-----~~~s~- 158 (270)
.+.|+.+++.+. .+.... ....+........ .....+....+.+. .++.... .+..... -.|++
T Consensus 131 ~VvD~~~~kvv~----ei~vp~-~~~vy~t~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~ 204 (352)
T TIGR02658 131 GVVDLEGKAFVR----MMDVPD-CYHIFPTANDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK 204 (352)
T ss_pred EEEECCCCcEEE----EEeCCC-CcEEEEecCCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence 999999987654 232211 1111111111111 11111111111111 1111100 1111000 13455
Q ss_pred CCCeEEEEecCCCceEEEEeCCCcc-----eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe-c----
Q 024245 159 EGPKYMAVAGEQLSEVEIWDLNTAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-Y---- 228 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~---- 228 (270)
+|..+++ +. .|+|.+.|+.... ....+.... .-.....+....++ ++|+ .++ +++.. .
T Consensus 205 dg~~~~v-s~--eG~V~~id~~~~~~~~~~~~~~~~~~~-----~~~~wrP~g~q~ia-~~~d--g~~-lyV~~~~~~~~ 272 (352)
T TIGR02658 205 SGRLVWP-TY--TGKIFQIDLSSGDAKFLPAIEAFTEAE-----KADGWRPGGWQQVA-YHRA--RDR-IYLLADQRAKW 272 (352)
T ss_pred CCcEEEE-ec--CCeEEEEecCCCcceecceeeeccccc-----cccccCCCcceeEE-EcCC--CCE-EEEEecCCccc
Confidence 7876665 44 3999999965432 222222100 00011112222255 8885 233 33322 1
Q ss_pred ----CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245 229 ----EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 229 ----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 265 (270)
..+.|.++|..+ ++.+..+.. ...+..++++|||+
T Consensus 273 thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgk 311 (352)
T TIGR02658 273 THKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAK 311 (352)
T ss_pred cccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCC
Confidence 225799999999 888888774 46899999999998
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=1.1e-10 Score=97.51 Aligned_cols=79 Identities=18% Similarity=0.400 Sum_probs=70.8
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeE-EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
.+.||++.|..+.|+-||+++++.|.|.++++|++++.+... ...+|. ++|..+.|.| + .++|++.|-+.++|
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs--aRvw~~~~~~--n--~i~t~gedctcrvW 243 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS--ARVWACCFLP--N--RIITVGEDCTCRVW 243 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc--ceeEEEEecc--c--eeEEeccceEEEEE
Confidence 588999999999999999999999999999999999987666 666787 7799999999 4 99999999999999
Q ss_pred EccCCc
Q 024245 92 DIENGG 97 (270)
Q Consensus 92 d~~~~~ 97 (270)
+.+...
T Consensus 244 ~~~~~~ 249 (967)
T KOG0974|consen 244 GVNGTQ 249 (967)
T ss_pred ecccce
Confidence 766543
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.7e-09 Score=82.74 Aligned_cols=73 Identities=18% Similarity=0.332 Sum_probs=59.2
Q ss_pred EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-----------CCcEE
Q 024245 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----------DGTVK 89 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----------d~~i~ 89 (270)
=+-+.|||-|.||+|-...| |.+|--++...++.|. | -.|.-+.||| +.++|+|-+- ...+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H---p~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H---PGVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C---CCceeeecCC--ccceEEEecCCccccCcccCCCceEE
Confidence 46789999999999998887 9999877777777764 4 3389999999 8899997542 25799
Q ss_pred EEEccCCccCC
Q 024245 90 CWDIENGGLSS 100 (270)
Q Consensus 90 ~wd~~~~~~~~ 100 (270)
|||+.+|...+
T Consensus 286 IWDI~tG~lkr 296 (698)
T KOG2314|consen 286 IWDIATGLLKR 296 (698)
T ss_pred EEEccccchhc
Confidence 99999997654
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.14 E-value=7.5e-09 Score=83.88 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=97.2
Q ss_pred CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEccCCccCCCCccceecccceEEE
Q 024245 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (270)
Q Consensus 39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 115 (270)
...|.++|...... +.+..+. ..+....|+| +|++|+.+..+ ..|.+||+.+++... +........
T Consensus 169 ~~~l~~~d~~g~~~-~~l~~~~--~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~~~~~~~~---- 237 (417)
T TIGR02800 169 RYELQVADYDGANP-QTITRSR--EPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK--VASFPGMNG---- 237 (417)
T ss_pred cceEEEEcCCCCCC-EEeecCC--CceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE--eecCCCCcc----
Confidence 34688888764433 4444444 4588999999 99998876543 479999998764321 100000000
Q ss_pred EeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC-CCceEEEEeCCCcceeeeeccCcCC
Q 024245 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCG 194 (270)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (270)
..+|+|+|+.++++... .+..|++||+.+++.. .+.
T Consensus 238 -------------------------------------~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~----- 274 (417)
T TIGR02800 238 -------------------------------------APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT----- 274 (417)
T ss_pred -------------------------------------ceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC-----
Confidence 04599999877754322 2346888999876543 333
Q ss_pred CCCCcccCCCceeeeeeecCCCCCCCceEEEEe-cCCC--cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDG--SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+. ....... |+| ||+ .|+.. ..++ .|+++|+.+ ++ ...+..+...+...+|+|||++|-
T Consensus 275 ---~~~----~~~~~~~-~s~---dg~-~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 275 ---NGP----GIDTEPS-WSP---DGK-SIAFTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred ---CCC----CCCCCEE-ECC---CCC-EEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEE
Confidence 121 1223344 888 455 55444 3344 588888876 43 344444556677899999998763
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=6.5e-09 Score=84.47 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=92.0
Q ss_pred cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC--cEEEEEccCCccCCCCccceecccceEEEEe
Q 024245 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (270)
Q Consensus 41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (270)
.|.++|...... +.+.... ..+.+..|+| +|+.|+..+. ++ .|.+||+.+++... +...+....
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~--~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~g~~~------ 265 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSP--EPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSFPGING------ 265 (448)
T ss_pred EEEEEeCCCCCc-eEeecCC--CcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCCCCCcC------
Confidence 677778765433 3343344 5688999999 9998886543 33 57888887764311 111111000
Q ss_pred eccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCC
Q 024245 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG 195 (270)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~ 195 (270)
..+|+|||+.++++ .+.++ .|+++|+.+++.. .+.
T Consensus 266 -----------------------------------~~~wSPDG~~La~~-~~~~g~~~Iy~~dl~tg~~~-~lt------ 302 (448)
T PRK04792 266 -----------------------------------APRFSPDGKKLALV-LSKDGQPEIYVVDIATKALT-RIT------ 302 (448)
T ss_pred -----------------------------------CeeECCCCCEEEEE-EeCCCCeEEEEEECCCCCeE-ECc------
Confidence 04599999987764 33455 4788888876643 343
Q ss_pred CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC--cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
.+ ........ |+|+ |+.++++...++ .|+++|+.+ ++. ..+..........+|+|||++|
T Consensus 303 --~~----~~~~~~p~-wSpD---G~~I~f~s~~~g~~~Iy~~dl~~-g~~-~~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 303 --RH----RAIDTEPS-WHPD---GKSLIFTSERGGKPQIYRVNLAS-GKV-SRLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred --cC----CCCccceE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEEecCCCCCcCeeECCCCCEE
Confidence 12 11234455 9984 553444444444 466677776 443 3332222334567899999876
No 254
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=7.8e-10 Score=85.56 Aligned_cols=209 Identities=14% Similarity=0.132 Sum_probs=132.0
Q ss_pred cccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCceeEEEeecCCC----cceEEEEEeeCCCCCEEEEEeCCC
Q 024245 12 AVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
..+..|.+.|..++.-|+. .-|.+++.|+.+.-.|+..+.+...+...... -...+++..|. +.+.+++++.|.
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dq 304 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR-NTNEFAVGGSDQ 304 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC-CccccccCChhh
Confidence 3455699999999999954 47899999999999999877554444321111 24678899996 447899999999
Q ss_pred cEEEEEccCCccCC--CCccc------eecccceEEEEeeccC-CccceecCCCCceEEEec--cC----------ceee
Q 024245 87 TVKCWDIENGGLSS--NPSLT------IKTNSYHFCKLSLVKE-PYANAKQANEPKDCYERE--VG----------ETVD 145 (270)
Q Consensus 87 ~i~~wd~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~----------~~~~ 145 (270)
.+++||.+.-.... .++.. .......+..+..... ...........+.++.-. .+ ..+.
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k 384 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK 384 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence 99999987543221 00001 0122222222222211 111111111122222111 11 1223
Q ss_pred eccCCCCC------e-EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245 146 TDSLCDSK------D-DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218 (270)
Q Consensus 146 ~~~~~~~~------~-~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~ 218 (270)
..+.||.+ + -|-|...++ ++|++-|.|.||+-.+++.++-++. - ...|.|+. =+|..+
T Consensus 385 ~vYKGHrN~~TVKgVNFfGPrsEyV--vSGSDCGhIFiW~K~t~eii~~Meg--------D----r~VVNCLE-pHP~~P 449 (559)
T KOG1334|consen 385 RVYKGHRNSRTVKGVNFFGPRSEYV--VSGSDCGHIFIWDKKTGEIIRFMEG--------D----RHVVNCLE-PHPHLP 449 (559)
T ss_pred hhhcccccccccceeeeccCccceE--EecCccceEEEEecchhHHHHHhhc--------c----cceEeccC-CCCCCc
Confidence 34778877 3 345777644 3899999999999999999888873 2 33788887 777655
Q ss_pred CCceEEEEecCCCcEEEEEcCC
Q 024245 219 QGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 219 ~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
.||+.+-|..|+||--.+
T Consensus 450 ----vLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 450 ----VLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ----hhhccCCccceeeecCCc
Confidence 999999999999998643
No 255
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.11 E-value=3.2e-09 Score=80.31 Aligned_cols=162 Identities=9% Similarity=0.074 Sum_probs=97.2
Q ss_pred eEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeecc-CCccceecCCCCceEEEeccCc-
Q 024245 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGE- 142 (270)
Q Consensus 65 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 142 (270)
...+..++ ++.+|+.+..+....++++.......++...... +.....++... ..........+....+++....
T Consensus 65 ~~~~~~s~--~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSD--SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCC--CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 44555667 7788888888888777777654321111111111 11111111111 1111122222333334433322
Q ss_pred eeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245 143 TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218 (270)
Q Consensus 143 ~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~ 218 (270)
.......||.. ++++||++.++ ++..|..|+|-....-..+..+.. ||. ..|..++ .-+
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~Ii--taDRDEkIRvs~ypa~f~Iesfcl-------GH~----eFVS~is-l~~--- 204 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFII--TADRDEKIRVSRYPATFVIESFCL-------GHK----EFVSTIS-LTD--- 204 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEE--EecCCceEEEEecCcccchhhhcc-------ccH----hheeeee-ecc---
Confidence 33335567766 89999997554 688999999998887777777776 774 4666665 554
Q ss_pred CCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 219 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
++ .|++||.|++|++||+++ ++.+.++.
T Consensus 205 -~~-~LlS~sGD~tlr~Wd~~s-gk~L~t~d 232 (390)
T KOG3914|consen 205 -NY-LLLSGSGDKTLRLWDITS-GKLLDTCD 232 (390)
T ss_pred -Cc-eeeecCCCCcEEEEeccc-CCcccccc
Confidence 44 789999999999999999 66655554
No 256
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.10 E-value=3.1e-08 Score=85.09 Aligned_cols=237 Identities=14% Similarity=0.074 Sum_probs=128.8
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--c-----eeEEEeecCCCcceEEE-EEeeCCCCC-EEEEEeCCCcE
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--R-----TVSSSWVHSAAHGIVSV-ATGPSIGLN-KVISQGRDGTV 88 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~-----~~~~~~~~~~~~~v~~~-~~~~~~~~~-~l~s~~~d~~i 88 (270)
...+.++...+.+..+|.++.||.|++.+++.. + +.+....+.. +.+.++ +|... .+. .|+.+..-+.|
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~-~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAI-VQSHVLVYATDLSRI 1175 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeeccccc-ccceeEEEEEeccce
Confidence 567888888899999999999999999998752 1 2222222322 334444 44332 334 67788888899
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCC-ccceecCCCCceEEEeccCceeeecc-CCCCC---eEecCCCC--
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDS-LCDSK---DDVPAEGP-- 161 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~s~~~~-- 161 (270)
..||+++............... ...+..+... ........+...+||++-+..+.... ..+.. +..+|-.+
T Consensus 1176 v~~D~r~~~~~w~lk~~~~hG~--vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~ 1253 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGL--VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQE 1253 (1431)
T ss_pred EEecchhhhhHHhhhcCccccc--eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCC
Confidence 9999988754431112222222 2222222222 22334445566779998776555433 22222 44444332
Q ss_pred eEEEEecC-CCceEEEEeCCCcceeeeeccCcCCCCCCcccCC-----CceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 162 KYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG-----RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 162 ~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
...+++++ ..+.|.+|++.+|.+...+..........+..+. ...+-... ....+.++ ++.+|+.|..|+.
T Consensus 1254 S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~-~~~~~~~~--~~ltggsd~kIR~ 1330 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS-CGVCEKNG--FLLTGGSDMKIRK 1330 (1431)
T ss_pred ceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccccee-eecccCCc--eeeecCCccceee
Confidence 34444555 6789999999999877666531000000111111 00000000 11111122 8999999999999
Q ss_pred EEcCCCCcceeeeeccCCCeeEEEee
Q 024245 236 WDIRNPGIPLTAMKVHLEPGLECSMW 261 (270)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~v~~~~~s 261 (270)
||...+...-....+.+........+
T Consensus 1331 wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1331 WDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred ccCCCcccccccccCccccccccchh
Confidence 99987544323333333333333333
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4.1e-08 Score=77.51 Aligned_cols=218 Identities=16% Similarity=0.207 Sum_probs=129.4
Q ss_pred EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEE-----EeCCCcEEEEEccCC
Q 024245 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-----QGRDGTVKCWDIENG 96 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~ 96 (270)
++..|+.|..+. +--..+.+.+|++.+.+.+.. ..|. ..|..+.++|......+++ .+.-+.|++|.....
T Consensus 129 W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~~-kl~~--~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQH-KLSV--SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhh-hhhhcceEEEEecCCccceee-eeec--cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 688888876533 333456899999987433321 2234 5589999998322234442 455568999988633
Q ss_pred ccCCCCccceecc-cceEEEEeec-------------cCCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCC
Q 024245 97 GLSSNPSLTIKTN-SYHFCKLSLV-------------KEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAE 159 (270)
Q Consensus 97 ~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~ 159 (270)
.... ....+.. ....+.+.+. .+.............++.+. +......+..... +.|+|+
T Consensus 205 ~~~~--~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 205 GQHQ--PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPS 281 (566)
T ss_pred cccc--hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCC
Confidence 2211 0000000 0000111111 11111111122223334444 3444444433333 999999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec--CCCcEEEEE
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWD 237 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~--~dg~i~vwd 237 (270)
++.+.++-|-.-..+.|||++ +.++..+.. +.-.++- |+|. |++.+++|- .-|.|-|||
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr-~~~v~df~e--------------gpRN~~~-fnp~---g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLR-GKPVFDFPE--------------GPRNTAF-FNPH---GNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCEEEEEEecccceEEEEcCC-CCEeEeCCC--------------CCccceE-ECCC---CCEEEEeecCCCCCceEEEe
Confidence 998888888888899999998 788887763 3445555 9995 664444443 348899999
Q ss_pred cCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 238 IRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 238 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+.+ .+++..+... .-+-+.|+|||+++-
T Consensus 343 v~n-~K~i~~~~a~--~tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 343 VPN-RKLIAKFKAA--NTTVFEWSPDGEYFL 370 (566)
T ss_pred ccc-hhhccccccC--CceEEEEcCCCcEEE
Confidence 999 8888888753 345689999999863
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=3.4e-08 Score=80.35 Aligned_cols=160 Identities=13% Similarity=0.082 Sum_probs=94.1
Q ss_pred cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEccCCccCCCCccceecccceEEEEe
Q 024245 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (270)
Q Consensus 41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (270)
.|.++|...+.. +.+..+. ..+....|+| +|+.|+..+.+ ..|.+||+.+++... +....+...
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~--~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~~~------ 246 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSR--EPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGLNG------ 246 (430)
T ss_pred EEEEECCCCCCc-eEEecCC--CceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCCcC------
Confidence 477888775444 3444444 5689999999 99988765543 368888998775322 111111000
Q ss_pred eccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCC
Q 024245 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG 195 (270)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~ 195 (270)
...|+|||+.++++. +.++ .|++||+.+++.. .+.
T Consensus 247 -----------------------------------~~~~SpDG~~la~~~-~~~g~~~Iy~~d~~~~~~~-~lt------ 283 (430)
T PRK00178 247 -----------------------------------APAWSPDGSKLAFVL-SKDGNPEIYVMDLASRQLS-RVT------ 283 (430)
T ss_pred -----------------------------------CeEECCCCCEEEEEE-ccCCCceEEEEECCCCCeE-Ecc------
Confidence 045999998877543 3334 6888899877643 343
Q ss_pred CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC--cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+ ........ |+|+ |+.++++...+| .|+++|+.+ ++. ..+..........+|+|||+.|.
T Consensus 284 --~~----~~~~~~~~-~spD---g~~i~f~s~~~g~~~iy~~d~~~-g~~-~~lt~~~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 284 --NH----PAIDTEPF-WGKD---GRTLYFTSDRGGKPQIYKVNVNG-GRA-ERVTFVGNYNARPRLSADGKTLV 346 (430)
T ss_pred --cC----CCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEE
Confidence 12 11233445 9985 542444444444 577778776 443 22222222344578999998763
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=8.6e-10 Score=89.49 Aligned_cols=208 Identities=14% Similarity=0.120 Sum_probs=136.8
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
.-++|.||.+.|.-+.|+.+.+.|-+...+|.|.||-+.+++..........++-|.+++|+. +|..+...-.||.|.
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVI 140 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEE
Confidence 457899999999999999999999999999999999999887766655444447799999999 999999999999998
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 169 (270)
+=.++.++...+ .+++..... +.|++|.+.+++ +-
T Consensus 141 VGsvdGNRIwgK---eLkg~~l~h----------------------------------------v~ws~D~~~~Lf--~~ 175 (1189)
T KOG2041|consen 141 VGSVDGNRIWGK---ELKGQLLAH----------------------------------------VLWSEDLEQALF--KK 175 (1189)
T ss_pred EEeeccceecch---hcchheccc----------------------------------------eeecccHHHHHh--hh
Confidence 877766543321 111111000 448888876664 44
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeee----ecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ----AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~----~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
.+|.+++||.. |....+++..+.....|-.......+-.+. .+.|..+|.. .|+.+-..|.+.+..-.+...|+
T Consensus 176 ange~hlydnq-gnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 176 ANGETHLYDNQ-GNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred cCCcEEEeccc-ccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCCCCCe
Confidence 57999999976 332222221110000011000001111111 1222233444 89999999999998766645565
Q ss_pred eeeeccCCCeeEEEeecCCCcee
Q 024245 246 TAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 246 ~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
..-.+ ..+..+.|+++|.+|.
T Consensus 254 v~dtg--m~~vgakWnh~G~vLA 274 (1189)
T KOG2041|consen 254 VVDTG--MKIVGAKWNHNGAVLA 274 (1189)
T ss_pred EEecc--cEeecceecCCCcEEE
Confidence 44443 5788899999998764
No 260
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.5e-07 Score=75.61 Aligned_cols=210 Identities=7% Similarity=-0.035 Sum_probs=113.9
Q ss_pred cEEEEEEeCCCCE-EEEecC---CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCC--CcEEEEE
Q 024245 20 SVTDVCFHQTKPI-LFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD--GTVKCWD 92 (270)
Q Consensus 20 ~v~~~~~s~~~~~-l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d--~~i~~wd 92 (270)
.+....|+|||+. ++..+. +..|.++|+.+++...... .. +.+....|+| ||+.|+ +.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~--g~~~~~~~SP--DG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ--GMLVVSDVSK--DGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC--CcEEeeEECC--CCCEEEEEEccCCCcEEEEEE
Confidence 6678999999984 554333 3569999998887665443 22 4466788999 988765 44434 4677778
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccCCCCCeEecCCCCeEEEEecCC
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 170 (270)
+.+++..+ +..... ......++.++..........+...+ +++..++..+....+.....|+|+|+.+++++...
T Consensus 264 l~~g~~~~--LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 264 TNTKTLTQ--ITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCCcEEE--cccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCC
Confidence 87775322 211111 11112233333322222222222233 45555554343333333378999999887755432
Q ss_pred C-------ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc--EEEEEcCCC
Q 024245 171 L-------SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNP 241 (270)
Q Consensus 171 d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~--i~vwd~~~~ 241 (270)
+ ..|.+.|+.+++. ..+.. + ....... |+| ||+..+++....+. +.+.++.
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~-~~LT~-------~------~~~~~p~-~SP---DG~~I~f~~~~~~~~~L~~~~l~-- 400 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYI-RRLTA-------N------GVNQFPR-FSS---DGGSIMFIKYLGNQSALGIIRLN-- 400 (419)
T ss_pred CcccCCCCcEEEEEECCCCCe-EECCC-------C------CCcCCeE-ECC---CCCEEEEEEccCCcEEEEEEecC--
Confidence 1 3688889887764 34441 1 0112344 999 46534444433444 5555665
Q ss_pred CcceeeeeccCCCeeE
Q 024245 242 GIPLTAMKVHLEPGLE 257 (270)
Q Consensus 242 ~~~~~~~~~~~~~v~~ 257 (270)
+.....+....+.+..
T Consensus 401 g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 401 YNKSFLFPLKVGKIQS 416 (419)
T ss_pred CCeeEEeecCCCccCC
Confidence 4444444433344443
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.3e-08 Score=80.64 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=110.2
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 109 (270)
...++-|...|.|.+|++..++....+....+.++|.++.++. +-..|.|++.|+.+..|+.......+ .....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~----~~~~~ 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIR----IWKEQ 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeee----eeccC
Confidence 3467888899999999999999999888666658899999998 77899999999999999998876533 11111
Q ss_pred cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 189 (270)
..... .++++|||..++ +++ +.|++||+.+++.+.+|.
T Consensus 144 ~~~~~--------------------------------------sl~is~D~~~l~--~as--~~ik~~~~~~kevv~~ft 181 (541)
T KOG4547|consen 144 KPLVS--------------------------------------SLCISPDGKILL--TAS--RQIKVLDIETKEVVITFT 181 (541)
T ss_pred CCccc--------------------------------------eEEEcCCCCEEE--ecc--ceEEEEEccCceEEEEec
Confidence 11110 056889987665 354 789999999999999999
Q ss_pred cCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 190 ~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
||..+.+....... +... -|.++|.+...+.-+.+|-+..
T Consensus 182 --------gh~s~v~t~~f~~~-~~g~--~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 182 --------GHGSPVRTLSFTTL-IDGI--IGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --------CCCcceEEEEEEEe-cccc--ccceeeeccccccceeEEEEEc
Confidence 89664433322221 2221 3564666667777788887764
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.07 E-value=1.3e-07 Score=74.12 Aligned_cols=223 Identities=12% Similarity=0.042 Sum_probs=127.1
Q ss_pred ccEEEEEEeCCCCEEEEecCC---------------CcEEEEeCCCCceeEEEeecC-----------------------
Q 024245 19 ASVTDVCFHQTKPILFAGTTG---------------GELRIWDTVQHRTVSSSWVHS----------------------- 60 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d---------------g~i~vwd~~~~~~~~~~~~~~----------------------- 60 (270)
..|..+.|+|++.+|.+=++. ..+.+||+.++..+..+....
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 568889999999999986543 359999998876554332111
Q ss_pred --------------------CCcceEEEEEeeCCCCCEEE-----EEeCCCcEEEEEccCCccCCCCccceecccceEEE
Q 024245 61 --------------------AAHGIVSVATGPSIGLNKVI-----SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (270)
Q Consensus 61 --------------------~~~~v~~~~~~~~~~~~~l~-----s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 115 (270)
....|....|+|..++..|+ ..+.++++++|.+..+..+. ...+- ....+.
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~--tk~lf--k~~~~q 227 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV--TKNLF--KVSGVQ 227 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee--eeeeE--eecccE
Confidence 01346666777733333343 24667788888876554322 00110 011111
Q ss_pred EeeccCC------------ccceecCCCCceEEEeccCceeee-ccCCCCC-eEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245 116 LSLVKEP------------YANAKQANEPKDCYEREVGETVDT-DSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (270)
Q Consensus 116 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~ 181 (270)
+...... ........+...++++........ .+.+... .+|.|.++.+.+++|-.+..+.++|++.
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 1111111 011111122233344442222221 1222222 8999999999988888999999999995
Q ss_pred cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC---CCcEEEEEcCCCCcceeeeeccCCCeeEE
Q 024245 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGSILVWDIRNPGIPLTAMKVHLEPGLEC 258 (270)
Q Consensus 182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 258 (270)
. ....+.. ..-..+. |+|. ++ +++.++- .|.+-+||......++..+.+. ...-+
T Consensus 308 N-l~~~~Pe--------------~~rNT~~-fsp~---~r-~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~ 365 (561)
T COG5354 308 N-LRFYFPE--------------QKRNTIF-FSPH---ER-YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYC 365 (561)
T ss_pred c-eEEecCC--------------ccccccc-ccCc---cc-EEEEecCCccccceEEeccCCceEEEEEeecC--CceEe
Confidence 4 5555542 1223333 9995 55 6666554 4789999988745555566653 34557
Q ss_pred EeecCCCce
Q 024245 259 SMWRNPITM 267 (270)
Q Consensus 259 ~~s~~g~~l 267 (270)
.|+|||+++
T Consensus 366 ~wspd~qF~ 374 (561)
T COG5354 366 DWSPDGQFY 374 (561)
T ss_pred eccCCceEE
Confidence 899999875
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.06 E-value=8.4e-09 Score=75.12 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=111.1
Q ss_pred EEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
..++.|++.+..++++..+|.+.+-+..... .++.++.|. -.+...+|+.. +.+.+.+|+.|+.+..||++..+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He--~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~- 199 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE--FEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPK- 199 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccc--eeeeeeecccC-CCceEEecCCCceEEEEEecCCc-
Confidence 4578899988899999999999966655443 344778888 44888999875 34889999999999999999332
Q ss_pred CCCCccc-eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEE
Q 024245 99 SSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (270)
Q Consensus 99 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iw 177 (270)
..++. .+.+....+.+. -+|..++.++ +|++|..|++|
T Consensus 200 --~~i~~n~kvH~~GV~SI~--------------------------------------ss~~~~~~I~-TGsYDe~i~~~ 238 (339)
T KOG0280|consen 200 --TFIWHNSKVHTSGVVSIY--------------------------------------SSPPKPTYIA-TGSYDECIRVL 238 (339)
T ss_pred --ceeeecceeeecceEEEe--------------------------------------cCCCCCceEE-Eeccccceeee
Confidence 11111 222233333222 2232234443 89999999999
Q ss_pred eCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC-c---ceeeeeccC
Q 024245 178 DLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-I---PLTAMKVHL 252 (270)
Q Consensus 178 d~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~-~---~~~~~~~~~ 252 (270)
|.| .++++..-. ..+-++.+. ++|... ++ +|+++ .-.-.+|-+..... + .....+.|.
T Consensus 239 DtRnm~kPl~~~~-------------v~GGVWRi~-~~p~~~-~~-lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 239 DTRNMGKPLFKAK-------------VGGGVWRIK-HHPEIF-HR-LLAAC-MHNGAKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred ehhcccCccccCc-------------cccceEEEE-ecchhh-hH-HHHHH-HhcCceEEEecccccchheeeecccccc
Confidence 999 456655433 457899998 998632 22 34444 33345555555421 2 233344555
Q ss_pred CCeeEEEe
Q 024245 253 EPGLECSM 260 (270)
Q Consensus 253 ~~v~~~~~ 260 (270)
+-+..-.|
T Consensus 302 Sl~YG~DW 309 (339)
T KOG0280|consen 302 SLCYGGDW 309 (339)
T ss_pred ceeecccc
Confidence 44444444
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.06 E-value=4.2e-07 Score=71.62 Aligned_cols=222 Identities=13% Similarity=0.165 Sum_probs=119.1
Q ss_pred ccEEEEEEeCCCCEEEEecC-CCcEEEEeCCC-CceeEE---Ee--ec------CCCcceEEEEEeeCCCCCEEEEEe-C
Q 024245 19 ASVTDVCFHQTKPILFAGTT-GGELRIWDTVQ-HRTVSS---SW--VH------SAAHGIVSVATGPSIGLNKVISQG-R 84 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~-~~~~~~---~~--~~------~~~~~v~~~~~~~~~~~~~l~s~~-~ 84 (270)
.....++++|++++|+++.. +|.|.++++.. +..... +. +. .......++.|+| +++++++.. .
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG 164 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLG 164 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecC
Confidence 44567899999998888864 89999999986 433322 21 00 1114478999999 988887654 3
Q ss_pred CCcEEEEEccCCc--cCCCCccceecccceEEEEeeccCCccc--eecCCCCceEEEec--cCc--ee---ee---ccCC
Q 024245 85 DGTVKCWDIENGG--LSSNPSLTIKTNSYHFCKLSLVKEPYAN--AKQANEPKDCYERE--VGE--TV---DT---DSLC 150 (270)
Q Consensus 85 d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~--~~---~~---~~~~ 150 (270)
...|.+|++.... +.......++.. .....+.+....... .....+.+..+++. .+. .+ .. ...+
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccC-CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 4589999997764 211001111111 112222232222222 22233444455555 221 11 11 1112
Q ss_pred CCC---eEecCCCCeEEEEecCCCceEEEEeCC--Ccc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245 151 DSK---DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (270)
Q Consensus 151 ~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~--~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~ 223 (270)
... ++++|||++++++.. .+++|.+|++. +++ .+..+.. .......+. ++| +|+++
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d~~~g~l~~~~~~~~------------~G~~Pr~~~-~s~---~g~~l 306 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNR-GSNSISVFDLDPATGTLTLVQTVPT------------GGKFPRHFA-FSP---DGRYL 306 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEECTTTTTEEEEEEEEE------------SSSSEEEEE-E-T---TSSEE
T ss_pred cCCceeEEEecCCCEEEEEec-cCCEEEEEEEecCCCceEEEEEEeC------------CCCCccEEE-EeC---CCCEE
Confidence 212 899999998887554 47899999993 233 2222221 112355666 888 46645
Q ss_pred EEEecCCCcEEEEEcCCC-Ccceeeee-ccCCCeeEEEe
Q 024245 224 VLAGYEDGSILVWDIRNP-GIPLTAMK-VHLEPGLECSM 260 (270)
Q Consensus 224 l~~~~~dg~i~vwd~~~~-~~~~~~~~-~~~~~v~~~~~ 260 (270)
+++...++.|.+|++... +.....-. ..-....||.|
T Consensus 307 ~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 307 YVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 555567789999987531 44322221 12345667766
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.04 E-value=2.1e-09 Score=79.85 Aligned_cols=87 Identities=20% Similarity=0.403 Sum_probs=73.7
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
..++.++++|.+.+++++|.+...+|.+|..|..+.+||+...+ ....+.+|. +.|..+...+ -...+++++.||
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~--~kV~~l~~~~--~t~~l~S~~edg 262 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN--DKVQALSYAQ--HTRQLISCGEDG 262 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch--hhhhhhhhhh--hheeeeeccCCC
Confidence 46788999999999999999999999999999999999997543 344667777 4588888877 668899999999
Q ss_pred cEEEEEccCCcc
Q 024245 87 TVKCWDIENGGL 98 (270)
Q Consensus 87 ~i~~wd~~~~~~ 98 (270)
.|.+||++..+.
T Consensus 263 ~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 263 GIVVWNMNVKRV 274 (404)
T ss_pred eEEEEeccceee
Confidence 999999976543
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=5.4e-08 Score=76.89 Aligned_cols=168 Identities=13% Similarity=0.172 Sum_probs=105.5
Q ss_pred EEEEEeCCCC-EE--EEecCCC---------cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE--EEeCCCc
Q 024245 22 TDVCFHQTKP-IL--FAGTTGG---------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI--SQGRDGT 87 (270)
Q Consensus 22 ~~~~~s~~~~-~l--~s~~~dg---------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~d~~ 87 (270)
..+.|++-|. +| ++..-|. ++++.+++..++.-.+.. . ++|.++.|+| ++.-++ -|-.-..
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~--GPVhdv~W~~--s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-E--GPVHDVTWSP--SGREFAVVYGFMPAK 295 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-C--CCceEEEECC--CCCEEEEEEecccce
Confidence 4577877665 22 2332232 567777663333333322 2 7899999999 876655 4556678
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 167 (270)
+.+||++.. +++.+...+... +-|+|.|..+++ +
T Consensus 296 vtifnlr~~-----~v~df~egpRN~----------------------------------------~~fnp~g~ii~l-A 329 (566)
T KOG2315|consen 296 VTIFNLRGK-----PVFDFPEGPRNT----------------------------------------AFFNPHGNIILL-A 329 (566)
T ss_pred EEEEcCCCC-----EeEeCCCCCccc----------------------------------------eEECCCCCEEEE-e
Confidence 899998753 233333222221 448999987765 4
Q ss_pred cC--CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC------CCcEEEEEcC
Q 024245 168 GE--QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVWDIR 239 (270)
Q Consensus 168 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~------dg~i~vwd~~ 239 (270)
|- -.|.|-|||+.+.+++..+.. - ..+-+ .|+| ||+ +++|+.. |+.++||+..
T Consensus 330 GFGNL~G~mEvwDv~n~K~i~~~~a--------~------~tt~~-eW~P---dGe-~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 330 GFGNLPGDMEVWDVPNRKLIAKFKA--------A------NTTVF-EWSP---DGE-YFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ecCCCCCceEEEeccchhhcccccc--------C------CceEE-EEcC---CCc-EEEEEeccccEEecCCeEEEEec
Confidence 43 358899999999888888872 1 22223 4999 566 6776653 7889999987
Q ss_pred CCCcceeeeeccCCCeeEEEeec
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
|..+..-...+ ..+.+.|-|
T Consensus 391 --G~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 391 --GSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred --CceeehhhhhH-hHhheeeee
Confidence 55554443222 577788876
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=2.7e-09 Score=55.15 Aligned_cols=39 Identities=36% Similarity=0.491 Sum_probs=35.5
Q ss_pred CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 50 HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 50 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
++++.++.+|. ..|.+|+|+| ++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~--~~i~~i~~~~--~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS--SSINSIAWSP--DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS--SSEEEEEEET--TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCC--CcEEEEEEec--ccccceeeCCCCEEEEEC
Confidence 36788899998 6699999999 899999999999999997
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=2.4e-07 Score=66.94 Aligned_cols=185 Identities=14% Similarity=0.124 Sum_probs=110.5
Q ss_pred EEEEEeC-----CCCEEEEecCCCcEEEEeCCCCce-eEEEeecCCCcceEEEEEeeCC--CCCEEEEEeCCCcEEEEEc
Q 024245 22 TDVCFHQ-----TKPILFAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 22 ~~~~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~d~~i~~wd~ 93 (270)
+.|.|-| ...+||.|+..|...+|...+.+- .+....+. ..+...... ..-.+..++.|.++++.++
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn-----n~v~~~~r~cd~~~~~~i~sndht~k~~~~ 145 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSN-----NDVTLVKRYCDLKFPLNIASNDHTGKTMVV 145 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccc-----cchhhhhhhcccccceeeccCCcceeEEEE
Confidence 4566666 234899999999999999986543 33333332 222221100 1134667888999999998
Q ss_pred cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCce
Q 024245 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~ 173 (270)
+.+.... ..+...... .+ ++++++++.+. ..| +...
T Consensus 146 ~~~s~~~----~~h~~~~~~--ns------------------------------------~~~snd~~~~~-~Vg-ds~~ 181 (344)
T KOG4532|consen 146 SGDSNKF----AVHNQNLTQ--NS------------------------------------LHYSNDPSWGS-SVG-DSRR 181 (344)
T ss_pred ecCcccc----eeeccccce--ee------------------------------------eEEcCCCceEE-Eec-CCCc
Confidence 7654321 111111110 01 45788887544 345 4577
Q ss_pred EEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee----
Q 024245 174 VEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM---- 248 (270)
Q Consensus 174 i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~---- 248 (270)
|..|.+.. ++.+..+.. .+....-.+.. |+.... .+|++..||++.|||++..+.+....
T Consensus 182 Vf~y~id~~sey~~~~~~----------a~t~D~gF~~S-~s~~~~----~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr 246 (344)
T KOG4532|consen 182 VFRYAIDDESEYIENIYE----------APTSDHGFYNS-FSENDL----QFAVVFQDGTCAIYDVRNMATPMAEISSTR 246 (344)
T ss_pred ceEEEeCCccceeeeeEe----------cccCCCceeee-eccCcc----eEEEEecCCcEEEEEecccccchhhhcccC
Confidence 88888763 333333221 11122223333 775422 89999999999999999866665544
Q ss_pred eccCCCeeEEEeecCCC----ceecC
Q 024245 249 KVHLEPGLECSMWRNPI----TMSEH 270 (270)
Q Consensus 249 ~~~~~~v~~~~~s~~g~----~ls~~ 270 (270)
..|.+++..+.|++-|. ++|||
T Consensus 247 p~hnGa~R~c~Fsl~g~lDLLf~sEh 272 (344)
T KOG4532|consen 247 PHHNGAFRVCRFSLYGLLDLLFISEH 272 (344)
T ss_pred CCCCCceEEEEecCCCcceEEEEecC
Confidence 35889999999998554 36676
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=6.2e-06 Score=62.29 Aligned_cols=241 Identities=12% Similarity=0.086 Sum_probs=135.3
Q ss_pred cccccEEEEEEeCCCCEEEEecC---CCcEEEEeCCC--CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CCcEE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVK 89 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~~i~ 89 (270)
.+.+.++-|+|+|+++.|+++-. +|.|..|.+.. |+....-.......+-..+++++ ++++|+++.. .|.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEE
Confidence 35677899999999999988755 47788887764 44332211111113358899999 9899987764 57899
Q ss_pred EEEccCCccCCCCccceeccc-----------ceEEEEeeccCCccceecCCCCc--eEEEeccCceeee----ccC--C
Q 024245 90 CWDIENGGLSSNPSLTIKTNS-----------YHFCKLSLVKEPYANAKQANEPK--DCYEREVGETVDT----DSL--C 150 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~--~ 150 (270)
++-+.....+..++....... .+...+. .........+-+.+ .++++..+..... ... |
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t--P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G 192 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT--PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG 192 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeC--CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence 999966333322222221111 1122222 22222333333333 3456664432211 111 2
Q ss_pred CCCeEecCCCCeEEEEecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229 (270)
Q Consensus 151 ~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~ 229 (270)
...+.|+|+++...+ ...-+++|-+|..... ..+..++.-. ....... ......++. .+| ||+++.++--.
T Consensus 193 PRHi~FHpn~k~aY~-v~EL~stV~v~~y~~~~g~~~~lQ~i~-tlP~dF~--g~~~~aaIh-is~---dGrFLYasNRg 264 (346)
T COG2706 193 PRHIVFHPNGKYAYL-VNELNSTVDVLEYNPAVGKFEELQTID-TLPEDFT--GTNWAAAIH-ISP---DGRFLYASNRG 264 (346)
T ss_pred cceEEEcCCCcEEEE-EeccCCEEEEEEEcCCCceEEEeeeec-cCccccC--CCCceeEEE-ECC---CCCEEEEecCC
Confidence 222999999997776 4677999999998763 2222222100 0000111 123444565 777 67744444444
Q ss_pred CCcEEEEEcCCCCcceeee---eccCCCeeEEEeecCCCcee
Q 024245 230 DGSILVWDIRNPGIPLTAM---KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 230 dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~ls 268 (270)
...|-++.+...+..+... ..+......+.|+|+|.+|-
T Consensus 265 ~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 265 HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 5588888887644433333 23444578899999988763
No 270
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=9.2e-09 Score=76.60 Aligned_cols=175 Identities=10% Similarity=0.112 Sum_probs=109.4
Q ss_pred EEeC--CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC-C
Q 024245 25 CFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS-N 101 (270)
Q Consensus 25 ~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~ 101 (270)
+|+- .|-. ++.+.+-.|.+-|++++-.. .|. .. +.|.++.|.. .++++..|+.+|.|...|++.+..-. .
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sk--sDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SK--SDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccc-ccc-cc--hhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCc
Confidence 5553 2333 44455566888888876433 333 23 4599999988 77999999999999999998763211 0
Q ss_pred CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (270)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~ 181 (270)
+...+ .+....+.+.. +--+++++++ ++.+|.|++||++.
T Consensus 291 ~a~rl-yh~Ssvtslq~-------------------------------------Lq~s~q~Lma--S~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 291 CAQRL-YHDSSVTSLQI-------------------------------------LQFSQQKLMA--SDMTGKIKLYDLRA 330 (425)
T ss_pred ceEEE-EcCcchhhhhh-------------------------------------hccccceEee--ccCcCceeEeeehh
Confidence 00000 01111111100 1113455653 55789999999998
Q ss_pred cce---eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC----CC
Q 024245 182 AER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL----EP 254 (270)
Q Consensus 182 ~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~ 254 (270)
-++ +.+++ ||.+...-.... ..| .+| .+++++.|...+||.++. +..+.+++... ..
T Consensus 331 ~K~~~~V~qYe--------GHvN~~a~l~~~---v~~--eeg--~I~s~GdDcytRiWsl~~-ghLl~tipf~~s~~e~d 394 (425)
T KOG2695|consen 331 TKCKKSVMQYE--------GHVNLSAYLPAH---VKE--EEG--SIFSVGDDCYTRIWSLDS-GHLLCTIPFPYSASEVD 394 (425)
T ss_pred hhcccceeeee--------cccccccccccc---ccc--ccc--eEEEccCeeEEEEEeccc-CceeeccCCCCcccccc
Confidence 777 88888 886533222211 233 234 788899999999999998 88888877533 24
Q ss_pred eeEEEeec
Q 024245 255 GLECSMWR 262 (270)
Q Consensus 255 v~~~~~s~ 262 (270)
+.+++|..
T Consensus 395 ~~sv~~~s 402 (425)
T KOG2695|consen 395 IPSVAFDS 402 (425)
T ss_pred ccceehhc
Confidence 56677654
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=1.6e-08 Score=75.29 Aligned_cols=185 Identities=14% Similarity=0.198 Sum_probs=112.3
Q ss_pred ccccc-ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-ceeEEE--eecCCC---cceEEEEEeeCCCCCEEEEE
Q 024245 10 PVAVL-RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSS--WVHSAA---HGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 10 ~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~--~~~~~~---~~v~~~~~~~~~~~~~l~s~ 82 (270)
|.+.+ .+|+--|++++++.|++.++++. |=.|.+|+++-- +....+ +.+..+ .-|++..|+|.+. +.++-.
T Consensus 155 prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YS 232 (433)
T KOG1354|consen 155 PRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYS 232 (433)
T ss_pred eeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEe
Confidence 33444 36889999999999999998875 567999998642 222222 222110 3488999999644 778888
Q ss_pred eCCCcEEEEEccCCccCCCCcccee--cccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 160 (270)
+..|+|++-|++...+-......+. ..+....-++ .....-..+.|+.+|
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffs----------------------------eiIsSISDvKFs~sG 284 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFS----------------------------EIISSISDVKFSHSG 284 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHH----------------------------HHhhhhhceEEccCC
Confidence 8899999999986543221111111 1111100000 000000016799999
Q ss_pred CeEEEEecCCCceEEEEeCC-CcceeeeeccCcCCCCCCcccC--------CCcee---eeeeecCCCCCCCceEEEEec
Q 024245 161 PKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSK--------GRGMC---MAVQAYLPSKSQGFVNVLAGY 228 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~--------~~~~~---~~~~~~~p~~~~g~~~l~~~~ 228 (270)
++++ +-. --+|++||+. ..+++.+++ -|..- ....+ ..++ |+.+ +. +++||+
T Consensus 285 ryil--sRD-yltvk~wD~nme~~pv~t~~--------vh~~lr~kLc~lYEnD~IfdKFec~-~sg~---~~-~v~TGs 348 (433)
T KOG1354|consen 285 RYIL--SRD-YLTVKLWDLNMEAKPVETYP--------VHEYLRSKLCSLYENDAIFDKFECS-WSGN---DS-YVMTGS 348 (433)
T ss_pred cEEE--Eec-cceeEEEeccccCCcceEEe--------ehHhHHHHHHHHhhccchhheeEEE-EcCC---cc-eEeccc
Confidence 8876 343 3799999994 556666665 23211 01111 2344 7764 33 999999
Q ss_pred CCCcEEEEEcCC
Q 024245 229 EDGSILVWDIRN 240 (270)
Q Consensus 229 ~dg~i~vwd~~~ 240 (270)
....++++++..
T Consensus 349 y~n~frvf~~~~ 360 (433)
T KOG1354|consen 349 YNNVFRVFNLAR 360 (433)
T ss_pred ccceEEEecCCC
Confidence 999999999654
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.93 E-value=5.5e-07 Score=78.93 Aligned_cols=225 Identities=10% Similarity=0.074 Sum_probs=122.1
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEE----eCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIW----DTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vw----d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
..+.|.++.|-++...++.+..+|.|.+. +..... +.....-. .+|.+++||| |++.|+..+.++++.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd--~GI~a~~WSP--D~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVD--SGILAASWSP--DEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEc--CcEEEEEECC--CcCEEEEEeCCCEEEEEe
Confidence 34689999999999989999999999999 544332 21222122 5699999999 999999888888887764
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCce----EEEeccCceeeeccC--CCCC-eEecCCCCeEEE
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD----CYEREVGETVDTDSL--CDSK-DDVPAEGPKYMA 165 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-~~~s~~~~~~~~ 165 (270)
-.-.-....++.. ........+++-+.....-.-+..... ..+....+.-...+. .... ++|..||.++.+
T Consensus 149 ~~fd~i~E~~l~~--~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 149 RDFDPISEVPLDS--DDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred ccceEEEEeecCc--cccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEE
Confidence 2211100000000 000001112222211110000000000 001000000001111 1111 899999998766
Q ss_pred Eec--CC--CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC---CCcEEEEEc
Q 024245 166 VAG--EQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGSILVWDI 238 (270)
Q Consensus 166 ~~~--~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~---dg~i~vwd~ 238 (270)
.+- .. -..++||+.. |.+..+-+ +..+.-.+++ |.|.++ +||+... ...|.+|.-
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE------------~v~gLe~~l~-WrPsG~----lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSE------------PVDGLEGALS-WRPSGN----LIASSQRLPDRHDVVFFER 288 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEeccc------------cCCCccCCcc-CCCCCC----EEEEEEEcCCCcEEEEEec
Confidence 443 22 2689999976 66444433 1344445566 999643 7777754 345777764
Q ss_pred CCCCcceeeee----ccCCCeeEEEeecCCCcee
Q 024245 239 RNPGIPLTAMK----VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 239 ~~~~~~~~~~~----~~~~~v~~~~~s~~g~~ls 268 (270)
+ |-.-..|. .....|..++|++|+..|.
T Consensus 289 N--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLA 320 (928)
T PF04762_consen 289 N--GLRHGEFTLRFDPEEEKVIELAWNSDSEILA 320 (928)
T ss_pred C--CcEeeeEecCCCCCCceeeEEEECCCCCEEE
Confidence 3 33222222 2356799999999998875
No 273
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.3e-07 Score=71.91 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=71.5
Q ss_pred cccccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
..+.+.+|...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-. +.++|..|...|.|
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---~~~wSC~wDld-e~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLD-ERHVIYAGLQNGMV 260 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---CCceeeeeccC-CcceeEEeccCceE
Confidence 4556778889999999999666 8889999999999999999888888877 55999999873 35678899999999
Q ss_pred EEEEccCCc
Q 024245 89 KCWDIENGG 97 (270)
Q Consensus 89 ~~wd~~~~~ 97 (270)
.+||++..+
T Consensus 261 lvyD~R~~~ 269 (463)
T KOG1645|consen 261 LVYDMRQPE 269 (463)
T ss_pred EEEEccCCC
Confidence 999998654
No 274
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.92 E-value=1.8e-08 Score=72.25 Aligned_cols=193 Identities=15% Similarity=0.127 Sum_probs=104.4
Q ss_pred EEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee------------EEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV------------SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
|+.+.++.+. .|+++-.++.+......++.+. +.+..+...++...... .++.++++..||.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~----~~t~V~~~~~dg~~ 113 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM----TDNRVCIGYADGSL 113 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc----cCCceEecCCCceE
Confidence 5666666543 5667766766666655443332 23333332233333222 34789999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCC--------CceEEEeccCceeeec---cCCCCCeEec
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE--------PKDCYEREVGETVDTD---SLCDSKDDVP 157 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~~s 157 (270)
.+++.+...... ..++............ .....+..+. ....|+++..+..... +.+-..++-+
T Consensus 114 ~v~s~~~~~~~~---~~i~~~~~~~as~~~~--~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~h 188 (319)
T KOG4714|consen 114 AVFSTDKDLALM---SRIPSIHSGSASRKIC--RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSH 188 (319)
T ss_pred EEEechHHHhhh---hhccccccccccccee--ecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCC
Confidence 999987632211 1111111000000000 0011111111 1112222222221111 1111116777
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCccee-eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
|..+.+++ +|+.||.+.+||.+..... ..+. .| +..++.+. |+|. ++. .|+++++||.+-.|
T Consensus 189 p~qq~~v~-cgt~dg~~~l~d~rn~~~p~S~l~--------ah----k~~i~eV~-FHpk--~p~-~Lft~sedGslw~w 251 (319)
T KOG4714|consen 189 PAQQHLVC-CGTDDGIVGLWDARNVAMPVSLLK--------AH----KAEIWEVH-FHPK--NPE-HLFTCSEDGSLWHW 251 (319)
T ss_pred cccccEEE-EecCCCeEEEEEcccccchHHHHH--------Hh----hhhhhhee-ccCC--Cch-heeEecCCCcEEEE
Confidence 88887776 7889999999999977533 3333 55 44677777 9997 455 89999999999999
Q ss_pred EcCC
Q 024245 237 DIRN 240 (270)
Q Consensus 237 d~~~ 240 (270)
|..+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9874
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.90 E-value=1.5e-07 Score=70.21 Aligned_cols=229 Identities=12% Similarity=0.160 Sum_probs=130.0
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCC-CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
.|.+++.++||.+.|++...-|..+-+++.+.|.+++||--. +++.-..+. |..+.++.++++.+ +...|+.|-..
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~--e~~~L~vg~~n 89 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVS--ESRRLYVGQDN 89 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeec--cceEEEEEEec
Confidence 357889999999999999999977789999999999999643 343333332 33337799999999 87889999999
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEe-ccCceeeeccCCCCC-eEec--CCCC
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYER-EVGETVDTDSLCDSK-DDVP--AEGP 161 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~s--~~~~ 161 (270)
|++.-+.+...-...........+.......-....+.-...........|.. +.+..+ ++.. .+.. ++-.
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l-----g~Y~~~~~~t~~~~d 164 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL-----GGYNFETPASALQFD 164 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcc-----cceEeeccCCCCcee
Confidence 99988876432111111111111211111111111111111111111111111 111111 0000 0000 1101
Q ss_pred eEEEEecCCCceEEEEeCC--CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 162 KYMAVAGEQLSEVEIWDLN--TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
...+..|...|.|.+-.+. .-.++.++. +| .+.+.++. |.|. ++ .|.+|..|..+.+||+.
T Consensus 165 ~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~--------~h----~~~~~~l~-Wd~~--~~--~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 165 ALYAFVGDHSGQITMLKLEQNGCQLITTFN--------GH----TGEVTCLK-WDPG--QR--LLFSGASDHSVIMWDIG 227 (404)
T ss_pred eEEEEecccccceEEEEEeecCCceEEEEc--------Cc----ccceEEEE-EcCC--Cc--EEEeccccCceEEEecc
Confidence 1122345555655554433 234566666 56 44677787 9985 22 89999999999999998
Q ss_pred CCCcceeeeeccCCCeeEEEe
Q 024245 240 NPGIPLTAMKVHLEPGLECSM 260 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~ 260 (270)
-.......+.+|...|..+..
T Consensus 228 g~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 228 GRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred CCcceeeeeccchhhhhhhhh
Confidence 655566677788776665443
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=4.5e-09 Score=79.48 Aligned_cols=84 Identities=18% Similarity=0.284 Sum_probs=72.0
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
..+-||-..++.++|+||+++++++.+|..|+|-....-..+..+. +|. .-|..++..+ + ..|+++|.|++|++
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~--eFVS~isl~~--~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHK--EFVSTISLTD--N-YLLLSGSGDKTLRL 219 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccH--hheeeeeecc--C-ceeeecCCCCcEEE
Confidence 3456899999999999999999999999999998887655555554 577 6699999988 5 67899999999999
Q ss_pred EEccCCccCC
Q 024245 91 WDIENGGLSS 100 (270)
Q Consensus 91 wd~~~~~~~~ 100 (270)
||+.+++...
T Consensus 220 Wd~~sgk~L~ 229 (390)
T KOG3914|consen 220 WDITSGKLLD 229 (390)
T ss_pred EecccCCccc
Confidence 9999998754
No 277
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=8.4e-09 Score=76.80 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=90.3
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
-++.|.++.|...+.++..|.+.|.|...|++.+ .+.+.+ .|. ..|+++..-.+ ++++|++.+.+|+|++|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~--Ssvtslq~Lq~-s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHD--SSVTSLQILQF-SQQKLMASDMTGKIKLY 326 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcC--cchhhhhhhcc-ccceEeeccCcCceeEe
Confidence 4567888999988899999999999999999764 344444 455 66888887664 45899999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d 171 (270)
|++--++.. .+.+.++|......+. +-+.+... +++ ++++|
T Consensus 327 D~R~~K~~~-~V~qYeGHvN~~a~l~------------------------------------~~v~~eeg-~I~-s~GdD 367 (425)
T KOG2695|consen 327 DLRATKCKK-SVMQYEGHVNLSAYLP------------------------------------AHVKEEEG-SIF-SVGDD 367 (425)
T ss_pred eehhhhccc-ceeeeecccccccccc------------------------------------cccccccc-eEE-EccCe
Confidence 998765422 1112222211110000 11333333 344 46679
Q ss_pred ceEEEEeCCCcceeeeecc
Q 024245 172 SEVEIWDLNTAERCTRLHQ 190 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~ 190 (270)
-..|||.++++.++.+++.
T Consensus 368 cytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eEEEEEecccCceeeccCC
Confidence 9999999999999988874
No 278
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=6.3e-07 Score=72.53 Aligned_cols=166 Identities=13% Similarity=0.034 Sum_probs=88.7
Q ss_pred CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCE--E-EEEeCCC--cEEEEEccCCccCCCCccceecccceEE
Q 024245 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK--V-ISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFC 114 (270)
Q Consensus 40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l-~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 114 (270)
..|.+.|...+.... +.... ..+..-.|+| ||+. + ++...++ .|.+.++.+++... +..+++....
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~--~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~-- 235 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEH--SLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLM-- 235 (428)
T ss_pred ceEEEEcCCCCCceE-cccCC--CCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccc--
Confidence 467778876554443 43333 4467889999 9875 2 2444444 46666777664322 1111111100
Q ss_pred EEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec---CCCceEEEEeCCCcc--eeeeec
Q 024245 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---EQLSEVEIWDLNTAE--RCTRLH 189 (270)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---~~d~~i~iwd~~~~~--~~~~~~ 189 (270)
.+|||||+.+++++. ..+-.+.+|++..+. ....+.
T Consensus 236 ---------------------------------------p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt 276 (428)
T PRK01029 236 ---------------------------------------PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL 276 (428)
T ss_pred ---------------------------------------eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee
Confidence 359999998876442 123334457766531 222222
Q ss_pred cCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE--EcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW--DIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 190 ~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
. +. ........ |+|+ |+.++++...+|...+| ++...+.....+..+...+...+|||||+.|
T Consensus 277 ~-------~~----~~~~~~p~-wSPD---G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 277 N-------EA----FGTQGNPS-FSPD---GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred c-------CC----CCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 1 11 11223455 9994 55234444456755555 4442233344455455667889999999876
Q ss_pred e
Q 024245 268 S 268 (270)
Q Consensus 268 s 268 (270)
.
T Consensus 342 a 342 (428)
T PRK01029 342 A 342 (428)
T ss_pred E
Confidence 3
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.84 E-value=5e-06 Score=64.64 Aligned_cols=202 Identities=10% Similarity=0.015 Sum_probs=110.4
Q ss_pred EEEEEeCCCCEEEEec-C-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245 22 TDVCFHQTKPILFAGT-T-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
..++++|||++|+... . +..|.+.|+.+++.+..+.... ...-...++ + ..+ .-+.||......+.+....
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~---~~~vy~t~e--~-~~~-~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD---CYHIFPTAN--D-TFF-MHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC---CcEEEEecC--C-ccE-EEeecCceEEEEecCCCce
Confidence 4789999999888766 3 6899999999999988877532 122222222 2 222 3334554444333221110
Q ss_pred C-CCccceec--ccceEE-EEeeccCCccceecCCCCceEEEeccC-----ceeee----------ccCCCCCeEecCCC
Q 024245 100 S-NPSLTIKT--NSYHFC-KLSLVKEPYANAKQANEPKDCYEREVG-----ETVDT----------DSLCDSKDDVPAEG 160 (270)
Q Consensus 100 ~-~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----------~~~~~~~~~~s~~~ 160 (270)
. .....+.. ...... .+.. ...........+.+...|+... ..... ...+-+.+++++++
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~-~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSN-KSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred EEeeeeeecCCccccccCCceEc-CCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 0 00000000 000000 0000 0111111222233344443221 11111 11111128999999
Q ss_pred CeEEEEecCC--------CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc-eEEEEecCCC
Q 024245 161 PKYMAVAGEQ--------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDG 231 (270)
Q Consensus 161 ~~~~~~~~~~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~~~~dg 231 (270)
++++++.-.. .+.|.++|..+++.+..+.. + ..++.++ ++|+ ++ .++++...++
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-------G------~~~~~ia-vS~D---gkp~lyvtn~~s~ 322 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-------G------HEIDSIN-VSQD---AKPLLYALSTGDK 322 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-------C------CceeeEE-ECCC---CCeEEEEeCCCCC
Confidence 9988743211 25899999999999999884 2 3577787 9994 55 3555555789
Q ss_pred cEEEEEcCCCCcceeeee
Q 024245 232 SILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~ 249 (270)
.|.++|..+ ++.+..+.
T Consensus 323 ~VsViD~~t-~k~i~~i~ 339 (352)
T TIGR02658 323 TLYIFDAET-GKELSSVN 339 (352)
T ss_pred cEEEEECcC-CeEEeeec
Confidence 999999999 77777773
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=1.2e-08 Score=83.19 Aligned_cols=194 Identities=18% Similarity=0.235 Sum_probs=119.1
Q ss_pred CCcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
......+.||..+|+.+-|+|. ...+++++.|-.+..||+++. .++..+.... ..-..++|+-. +++.++ .+..
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s~asqVkwnyk-~p~vla-sshg 179 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--SAASQVKWNYK-DPNVLA-SSHG 179 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--ccCceeeeccc-Ccchhh-hccC
Confidence 3455668899999999999994 458999999999999999874 4454444433 44678999873 434444 4556
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEE
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 165 (270)
+.|++||.+.+. .|+..++++...... ++|..--...+.
T Consensus 180 ~~i~vwd~r~gs---~pl~s~K~~vs~vn~--------------------------------------~~fnr~~~s~~~ 218 (1081)
T KOG0309|consen 180 NDIFVWDLRKGS---TPLCSLKGHVSSVNS--------------------------------------IDFNRFKYSEIM 218 (1081)
T ss_pred CceEEEeccCCC---cceEEecccceeeeh--------------------------------------HHHhhhhhhhhc
Confidence 679999999886 444555553222211 112211112233
Q ss_pred EecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCce--------EEEEecCCCcEEE
Q 024245 166 VAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV--------NVLAGYEDGSILV 235 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~--------~l~~~~~dg~i~v 235 (270)
+++.|++|+.||..... ..++.. ....++.-. |-|-+ +|.. .+.----+.....
T Consensus 219 -s~~~d~tvkfw~y~kSt~e~~~~vt-------------t~~piw~~r-~~Pfg-~g~~~mp~~G~n~v~~~~c~n~d~e 282 (1081)
T KOG0309|consen 219 -SSSNDGTVKFWDYSKSTTESKRTVT-------------TNFPIWRGR-YLPFG-EGYCIMPMVGGNMVPQLRCENSDLE 282 (1081)
T ss_pred -ccCCCCceeeecccccccccceecc-------------ccCcceecc-ccccC-ceeEeccccCCeeeeeccccchhhh
Confidence 56779999999987543 222222 222344443 55543 2321 1111112333445
Q ss_pred EEcCCCCcceeeeeccCCCeeEEEeec
Q 024245 236 WDIRNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
|++.+..+++.+|.||.+.|...-|-.
T Consensus 283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 283 WNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred hccccCCcceeeecCcchHHHHHhhhh
Confidence 677776789999999998887665543
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=1.1e-05 Score=60.91 Aligned_cols=222 Identities=11% Similarity=0.113 Sum_probs=117.7
Q ss_pred EEEEEeCCCCEEEEecC-CCcEEEEeCCC-CceeEE--EeecCCC--------cceEEEEEeeCCCCCEEEEEeC-CCcE
Q 024245 22 TDVCFHQTKPILFAGTT-GGELRIWDTVQ-HRTVSS--SWVHSAA--------HGIVSVATGPSIGLNKVISQGR-DGTV 88 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~-dg~i~vwd~~~-~~~~~~--~~~~~~~--------~~v~~~~~~~~~~~~~l~s~~~-d~~i 88 (270)
+-++++++|++|+++.. .|.|.++-++. |..... +..|... .-+....+.| ++++|++... -..|
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP--~~~~l~v~DLG~Dri 169 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP--DGRYLVVPDLGTDRI 169 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC--CCCEEEEeecCCceE
Confidence 77888999999988876 47899998865 432221 1112210 1178899999 9888887653 3479
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCcccee--cCCCCceEEEeccC--c--------eeeeccCCCCC---
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK--QANEPKDCYEREVG--E--------TVDTDSLCDSK--- 153 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~--------~~~~~~~~~~~--- 153 (270)
.+|++..+++.......++.. .....+.+..+....++ --.+.+..|..... + .+...+.+...
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G-~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPG-AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred EEEEcccCccccccccccCCC-CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 999999887644222222111 11122222222222222 22334444544442 1 12223334433
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCC
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG 231 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg 231 (270)
+.+++||++|.++-- ....|.+|.+.... .+..+.. . ........... |+|+ |+ +|+++. .+.
T Consensus 249 Ihis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~~~--------~-~teg~~PR~F~-i~~~---g~-~Liaa~q~sd 313 (346)
T COG2706 249 IHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELVGI--------T-PTEGQFPRDFN-INPS---GR-FLIAANQKSD 313 (346)
T ss_pred EEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEEEE--------e-ccCCcCCccce-eCCC---CC-EEEEEccCCC
Confidence 899999998886433 34588888776432 2222221 0 10111233444 7774 55 555555 445
Q ss_pred cEEEEEcCCCCcceeeee--ccCCCeeEEEee
Q 024245 232 SILVWDIRNPGIPLTAMK--VHLEPGLECSMW 261 (270)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~s 261 (270)
.|.+|......-.+..+. .......||.|.
T Consensus 314 ~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 314 NITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 688887764222233222 223445666664
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.80 E-value=1.9e-06 Score=67.36 Aligned_cols=171 Identities=12% Similarity=0.142 Sum_probs=115.7
Q ss_pred EeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC-cEEEEEccCCccCCCCc
Q 024245 26 FHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-TVKCWDIENGGLSSNPS 103 (270)
Q Consensus 26 ~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~ 103 (270)
|++ +|.+++..|+ |...|.+...+-.++. ++. ..|.-..+.- +++-++.|..|| .+-++|.++++..+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~--~~VrY~r~~~--~~e~~vigt~dgD~l~iyd~~~~e~kr--- 396 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKK--GGVRYRRIQV--DPEGDVIGTNDGDKLGIYDKDGGEVKR--- 396 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCC--CceEEEEEcc--CCcceEEeccCCceEEEEecCCceEEE---
Confidence 455 7888888886 5677777665555533 344 4588888877 777888999998 89999999886432
Q ss_pred cceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcc
Q 024245 104 LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 183 (270)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~ 183 (270)
+...-.... + +..+++|+.+++ +.....|-+.|+.+++
T Consensus 397 --~e~~lg~I~--a------------------------------------v~vs~dGK~~vv--aNdr~el~vididngn 434 (668)
T COG4946 397 --IEKDLGNIE--A------------------------------------VKVSPDGKKVVV--ANDRFELWVIDIDNGN 434 (668)
T ss_pred --eeCCccceE--E------------------------------------EEEcCCCcEEEE--EcCceEEEEEEecCCC
Confidence 111111111 1 458899987764 4556888899999887
Q ss_pred eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC----cEEEEEcCCCCcceeeeeccCCCeeEEE
Q 024245 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG----SILVWDIRNPGIPLTAMKVHLEPGLECS 259 (270)
Q Consensus 184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 259 (270)
....-+ ...+.++... |+|+ ++ ++|-+--+| .|+++|+.. ++....-. ..+.=.+-+
T Consensus 435 v~~idk------------S~~~lItdf~-~~~n---sr-~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT-~ta~DfsPa 495 (668)
T COG4946 435 VRLIDK------------SEYGLITDFD-WHPN---SR-WIAYAFPEGYYTQSIKLYDMDG-GKIYDVTT-PTAYDFSPA 495 (668)
T ss_pred eeEecc------------cccceeEEEE-EcCC---ce-eEEEecCcceeeeeEEEEecCC-CeEEEecC-CcccccCcc
Confidence 543222 1467888888 9994 55 888877665 689999997 55433322 233335567
Q ss_pred eecCCCce
Q 024245 260 MWRNPITM 267 (270)
Q Consensus 260 ~s~~g~~l 267 (270)
|.|||++|
T Consensus 496 FD~d~ryL 503 (668)
T COG4946 496 FDPDGRYL 503 (668)
T ss_pred cCCCCcEE
Confidence 88998875
No 283
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.79 E-value=1.1e-06 Score=68.95 Aligned_cols=218 Identities=12% Similarity=0.066 Sum_probs=128.2
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC----------
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG---------- 86 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~---------- 86 (270)
-.-++..++|||.|.+|++....| |.+|.-.....+..+.. ..|..+.|+| ++++|.+=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~----~~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH----PDVKYLDFSP--NEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeeec----CCceecccCc--ccceeeeeccCCccChhhccCC
Confidence 456789999999999999988776 99999887765555543 3399999999 999999755433
Q ss_pred -----cEEEEEccCCccCCCCccceecccce-----EEEEeeccCCccceecCCCCceEEEeccCceee---eccC--CC
Q 024245 87 -----TVKCWDIENGGLSSNPSLTIKTNSYH-----FCKLSLVKEPYANAKQANEPKDCYEREVGETVD---TDSL--CD 151 (270)
Q Consensus 87 -----~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~ 151 (270)
.+.+||+.++.++. .+...... ...++.. .....-..+....++++ +..... ..+. +-
T Consensus 104 ~~~~n~~~vwd~~sg~iv~----sf~~~~q~~~~Wp~~k~s~~--D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 104 FTSKNNVFVWDIASGMIVF----SFNGISQPYLGWPVLKFSID--DKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccccCceeEEeccCceeEe----eccccCCcccccceeeeeec--chhhhhhccCeEEEEec-CCccccCchhhccccce
Confidence 59999999997643 33322222 2222222 22222224555555664 222111 1111 11
Q ss_pred CCeEecCCCCeE--EEE---ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245 152 SKDDVPAEGPKY--MAV---AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (270)
Q Consensus 152 ~~~~~s~~~~~~--~~~---~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (270)
....|+|.++.- ... ....+++++||.+..+..+.+-.. ....-..+. |.+. |.++++-
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l------------fk~~~~qLk-W~~~---g~~ll~l 240 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL------------FKVSGVQLK-WQVL---GKYLLVL 240 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee------------EeecccEEE-EecC---CceEEEE
Confidence 116677764321 111 134578999999987665544331 111223344 7764 3322221
Q ss_pred ec----------CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245 227 GY----------EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 227 ~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
.- ....++|++++. ..+.....-.++|.+.+|.|.+..
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSR 288 (561)
T ss_pred EEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCc
Confidence 11 134688888884 323333355789999999998765
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=1.2e-06 Score=72.43 Aligned_cols=214 Identities=10% Similarity=0.109 Sum_probs=130.9
Q ss_pred CCcccccccccccEEEEEEeCC------------CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQT------------KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG 75 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~------------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 75 (270)
.+.++.+..|...|+.+.|.|. .-+||++...|.|.+||...+..+..+..+. +++..++|-+..+
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~--~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN--DSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC--cchhheeeeeccC
Confidence 3678889999999999999873 1268888899999999999888887787777 7799999988543
Q ss_pred C--CEEEEEeCCCcEEEEEccCCccCC------CCccceecccceEEEEeeccCCcccee-------cCCCCceEEEecc
Q 024245 76 L--NKVISQGRDGTVKCWDIENGGLSS------NPSLTIKTNSYHFCKLSLVKEPYANAK-------QANEPKDCYEREV 140 (270)
Q Consensus 76 ~--~~l~s~~~d~~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 140 (270)
. ..|+.-....++.+|+..+|+... .++..+...+.....+.+......... -.......+.+.+
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 2 456777778899999999987643 111112211111111111111110000 0011111222221
Q ss_pred Ccee-----e------eccCCCCC---------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcc
Q 024245 141 GETV-----D------TDSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS 200 (270)
Q Consensus 141 ~~~~-----~------~~~~~~~~---------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~ 200 (270)
...- + ........ .+|+|.-++.++++- ...+.|+|++-..++.....
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~--prellv~dle~~~~l~vvpi---------- 270 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF--PRELLVFDLEYECCLAVVPI---------- 270 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe--ccceEEEcchhhceeEEEEe----------
Confidence 1000 0 00000001 678888777776553 57899999998888877763
Q ss_pred cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 201 ~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
.++.+--+. +-|+.. .. .|++.-.||.+.+|-.+.
T Consensus 271 --er~~akfv~-vlP~~~-rd-~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 271 --ERGGAKFVD-VLPDPR-RD-ALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred --ccCCcceeE-eccCCC-cc-eEEEEecCCeEEEEEeec
Confidence 122233344 777633 22 899999999999997654
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.75 E-value=1.8e-06 Score=62.54 Aligned_cols=177 Identities=10% Similarity=-0.008 Sum_probs=102.1
Q ss_pred EEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccce
Q 024245 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (270)
Q Consensus 33 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 112 (270)
+..++.|.++++.+++.+.....+.... -.+.++++++ ++.++++.+....|..|.+........-+...+.....
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHG 206 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccc--cceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCc
Confidence 4556677777777776544333322222 2378999999 99999999999999999887543211000000111111
Q ss_pred EEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc
Q 024245 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (270)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 192 (270)
++ ..|+..... + +++..||++.|||++..........
T Consensus 207 F~---------------------------------------~S~s~~~~~-F-Av~~Qdg~~~I~DVR~~~tpm~~~s-- 243 (344)
T KOG4532|consen 207 FY---------------------------------------NSFSENDLQ-F-AVVFQDGTCAIYDVRNMATPMAEIS-- 243 (344)
T ss_pred ee---------------------------------------eeeccCcce-E-EEEecCCcEEEEEecccccchhhhc--
Confidence 11 335555543 3 3677899999999997653332221
Q ss_pred CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee-------ccC-CCeeEEEeecCC
Q 024245 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-------VHL-EPGLECSMWRNP 264 (270)
Q Consensus 193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~-~~v~~~~~s~~g 264 (270)
...+. ..+.+..+. |+|.+... +|+..-.-+.+.+.|+++ ....+.+. .|. ..|..-.|+.++
T Consensus 244 -strp~----hnGa~R~c~-Fsl~g~lD--LLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 244 -STRPH----HNGAFRVCR-FSLYGLLD--LLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred -ccCCC----CCCceEEEE-ecCCCcce--EEEEecCcceEEEEEccc-CceeeEEecCccccccccccccccccccCCC
Confidence 01112 355666666 99865433 555555567899999998 44333322 122 236666676654
Q ss_pred C
Q 024245 265 I 265 (270)
Q Consensus 265 ~ 265 (270)
.
T Consensus 315 ~ 315 (344)
T KOG4532|consen 315 E 315 (344)
T ss_pred c
Confidence 3
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=1e-05 Score=65.32 Aligned_cols=197 Identities=6% Similarity=-0.081 Sum_probs=102.3
Q ss_pred CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCE-EEEEeC---CCcEEEEEccCCccCCCCccceecccceEEE
Q 024245 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (270)
Q Consensus 40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 115 (270)
..|.+-|..... .+.+... ..+....|+| +|+. ++..+. +..|.++|+.+++... +...++. .....
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~---~~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~-~~~~~ 239 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG---GLNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGM-LVVSD 239 (419)
T ss_pred ceEEEECCCCCc-eeEEccC---CCeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCc-EEeeE
Confidence 456665554333 3333322 2478899999 9885 553333 3468888998876432 2221111 11122
Q ss_pred EeeccCCccceecCCCCceEE--EeccCceeeec-cCCCCC-eEecCCCCeEEEEecCCC-ceEEEEeCCCcceeeeecc
Q 024245 116 LSLVKEPYANAKQANEPKDCY--EREVGETVDTD-SLCDSK-DDVPAEGPKYMAVAGEQL-SEVEIWDLNTAERCTRLHQ 190 (270)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~-~~~s~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~~ 190 (270)
+++++..........+...+| ++..++....+ ..+... ..|+|||+.+++++...+ ..|.+.|+.+++..+....
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 333332222222223333444 44444432221 122122 789999998887653322 2688888887665332221
Q ss_pred CcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC--------CcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--------GSILVWDIRNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
+. . ... |+|+ |+.++++...+ ..|.+.|+.+ +.. ..+... .......|+|
T Consensus 320 -------g~----~----~~~-~SPD---G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~~-~~LT~~-~~~~~p~~SP 377 (419)
T PRK04043 320 -------GK----N----NSS-VSTY---KNYIVYSSRETNNEFGKNTFNLYLISTNS-DYI-RRLTAN-GVNQFPRFSS 377 (419)
T ss_pred -------CC----c----Cce-ECCC---CCEEEEEEcCCCcccCCCCcEEEEEECCC-CCe-EECCCC-CCcCCeEECC
Confidence 11 1 124 9994 55344444332 3688888877 443 334332 2334688999
Q ss_pred CCCce
Q 024245 263 NPITM 267 (270)
Q Consensus 263 ~g~~l 267 (270)
||+.|
T Consensus 378 DG~~I 382 (419)
T PRK04043 378 DGGSI 382 (419)
T ss_pred CCCEE
Confidence 99875
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.68 E-value=2.7e-05 Score=57.22 Aligned_cols=74 Identities=8% Similarity=0.105 Sum_probs=49.5
Q ss_pred EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeec-----CCCcceEEEEEeeCC-C---CCEEEEEeCCCcEEEE
Q 024245 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH-----SAAHGIVSVATGPSI-G---LNKVISQGRDGTVKCW 91 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~-~---~~~l~s~~~d~~i~~w 91 (270)
=+.++||||+.+||.+...|+|+++|+... .+..+... .-...|..+.|.+.. + ...|+....+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 367999999999999999999999998753 33233211 111457777776521 1 1246667778888877
Q ss_pred EccC
Q 024245 92 DIEN 95 (270)
Q Consensus 92 d~~~ 95 (270)
-+..
T Consensus 125 ~vs~ 128 (282)
T PF15492_consen 125 LVSV 128 (282)
T ss_pred EEEc
Confidence 7643
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=3.1e-07 Score=75.36 Aligned_cols=225 Identities=11% Similarity=0.131 Sum_probs=134.2
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
.+.+.++..+|.|+-+|.+++-| +.+-|+...-....+-.|..+-.|-.+.|+|.....+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788899999999999999988 67778765322222222332234777888874333344433334445689886432
Q ss_pred cCCCCccceecccceEEEEeeccCCccc--eecCCCCceEEEeccCceeeeccCC-CCC---eEecCCCCeEEEEecCCC
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYAN--AKQANEPKDCYEREVGETVDTDSLC-DSK---DDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~s~~~~~~~~~~~~~d 171 (270)
.. ..-+.++++......+.+....... ..........|+++........... +.. ++|+--...+++ .+..
T Consensus 103 ~~-aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla--sshg 179 (1081)
T KOG0309|consen 103 SN-AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA--SSHG 179 (1081)
T ss_pred cc-ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh--hccC
Confidence 21 1223455555544444444333222 2333556777888877655443322 222 889977777775 3345
Q ss_pred ceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 172 SEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 172 ~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
..|++||.+.|. ++..++ +|. ..+..+. |.... .+ .+.+.+.||+|++||.....+.-.....
T Consensus 180 ~~i~vwd~r~gs~pl~s~K--------~~v----s~vn~~~-fnr~~-~s--~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLK--------GHV----SSVNSID-FNRFK-YS--EIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred CceEEEeccCCCcceEEec--------ccc----eeeehHH-Hhhhh-hh--hhcccCCCCceeeecccccccccceecc
Confidence 789999999775 677777 553 3455555 65431 12 7999999999999998763332222222
Q ss_pred cCCCeeEEEeec
Q 024245 251 HLEPGLECSMWR 262 (270)
Q Consensus 251 ~~~~v~~~~~s~ 262 (270)
...+|+--++-|
T Consensus 244 t~~piw~~r~~P 255 (1081)
T KOG0309|consen 244 TNFPIWRGRYLP 255 (1081)
T ss_pred ccCcceeccccc
Confidence 345566555555
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=9.5e-06 Score=72.66 Aligned_cols=189 Identities=12% Similarity=0.066 Sum_probs=104.0
Q ss_pred EEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecC-------------CCcceEEEEEeeCCCCCE-EEEEeCC
Q 024245 21 VTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-------------AAHGIVSVATGPSIGLNK-VISQGRD 85 (270)
Q Consensus 21 v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~-l~s~~~d 85 (270)
-+.++|+| ++.++++.+.++.|++||..++... .+.+.. .-.....|+++| +++. +++-+.+
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n 761 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSES 761 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCC
Confidence 35789999 5667777778899999998876433 222110 002356799999 8774 4566678
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEE
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 165 (270)
+.|++||+.++.... ...+...... ..... +.. .+......+.....++++++|. +++
T Consensus 762 ~~Irv~D~~tg~~~~----~~gg~~~~~~-------~l~~f---G~~-------dG~g~~~~l~~P~Gvavd~dG~-LYV 819 (1057)
T PLN02919 762 SSIRALDLKTGGSRL----LAGGDPTFSD-------NLFKF---GDH-------DGVGSEVLLQHPLGVLCAKDGQ-IYV 819 (1057)
T ss_pred CeEEEEECCCCcEEE----EEecccccCc-------ccccc---cCC-------CCchhhhhccCCceeeEeCCCc-EEE
Confidence 999999998764210 0000000000 00000 000 0000000111112278999997 444
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCc-ccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF-SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+...++.|++||..++...........+...|. ..........++ ++| +|+ ++++-+.++.|++||+.+
T Consensus 820 -ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa-vd~---dG~-lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 820 -ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA-LGE---NGR-LFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred -EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE-EeC---CCC-EEEEECCCCEEEEEECCC
Confidence 445689999999987765533321000000000 000112344565 777 466 788888999999999988
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=1.8e-05 Score=59.62 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=99.8
Q ss_pred cccccccccccEEEEEEeCCCCEEEEe-----cCCCcEEEEeCC-CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAG-----TTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~-----~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
.-+.|.|| -.||+||++|++. ...|.|-|||.. +.+.+.++..+. -.-..+.+.| +|..|+.+.
T Consensus 48 ~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G--IGPHel~l~p--DG~tLvVAN 117 (305)
T PF07433_consen 48 PGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG--IGPHELLLMP--DGETLVVAN 117 (305)
T ss_pred CCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC--cChhhEEEcC--CCCEEEEEc
Confidence 44567777 6899999999885 345899999998 667888888776 4467888999 987777652
Q ss_pred C------------------CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC------CCCceEEEec
Q 024245 84 R------------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA------NEPKDCYERE 139 (270)
Q Consensus 84 ~------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 139 (270)
. +-++.+-|..+++++.+..+....+......+.+........... ...-.+.-.+
T Consensus 118 GGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~ 197 (305)
T PF07433_consen 118 GGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR 197 (305)
T ss_pred CCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc
Confidence 2 224555566666654422221122333344444433322111110 0000111111
Q ss_pred cCceee---------eccCCCCC-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245 140 VGETVD---------TDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 140 ~~~~~~---------~~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 189 (270)
.++.+. ..+.+... +++++++..+.+ ++-..+.+.+||..+++.+....
T Consensus 198 ~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~-tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 198 RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV-TSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEE-ECCCCCEEEEEECCCCCEeeccc
Confidence 111111 11112222 899999976554 67778999999999999888776
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=6.9e-05 Score=56.25 Aligned_cols=216 Identities=12% Similarity=0.135 Sum_probs=120.8
Q ss_pred EEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEe-eCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245 22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-PSIGLNKVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 22 ~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
.+..|.+ ++.++++--..+.|..|+..+++.. .+... . ...+.+. + + ..|+.+...+ +.++|+.+++..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~---~-~~G~~~~~~--~-g~l~v~~~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLP---G-PNGMAFDRP--D-GRLYVADSGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESS---S-EEEEEEECT--T-SEEEEEETTC-EEEEETTTTEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecC---C-CceEEEEcc--C-CEEEEEEcCc-eEEEecCCCcEE
Confidence 3678898 7778888778899999999876543 23322 2 6778888 4 5 5555555554 566698887653
Q ss_pred CCCccceecc---cceEEEEeeccCCccceecCCC-----C--ceEEEeccCceeee---ccCCCCCeEecCCCCeEEEE
Q 024245 100 SNPSLTIKTN---SYHFCKLSLVKEPYANAKQANE-----P--KDCYEREVGETVDT---DSLCDSKDDVPAEGPKYMAV 166 (270)
Q Consensus 100 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~ 166 (270)
. +...... ......+.+............. . ..+|.+.....+.. .+.....++|+|+++.+++
T Consensus 74 ~--~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv- 150 (246)
T PF08450_consen 74 V--LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYV- 150 (246)
T ss_dssp E--EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEE-
T ss_pred E--EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheee-
Confidence 2 3333211 1222223333222211111111 0 23444444422222 2222222999999998776
Q ss_pred ecCCCceEEEEeCCCcce-e---eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 167 AGEQLSEVEIWDLNTAER-C---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~-~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
+-+..+.|..|++..... + ..+.. . ....+..-.++ +.. +|. +.++....+.|.++|.+ +
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~--------~-~~~~g~pDG~~-vD~---~G~-l~va~~~~~~I~~~~p~--G 214 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFID--------F-PGGPGYPDGLA-VDS---DGN-LWVADWGGGRIVVFDPD--G 214 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE----------SSSSCEEEEEE-EBT---TS--EEEEEETTTEEEEEETT--S
T ss_pred cccccceeEEEeccccccceeeeeeEEE--------c-CCCCcCCCcce-EcC---CCC-EEEEEcCCCEEEEECCC--c
Confidence 445578899999863221 1 12210 0 00112344454 665 565 66666678899999977 7
Q ss_pred cceeeeeccCCCeeEEEee-cCCC
Q 024245 243 IPLTAMKVHLEPGLECSMW-RNPI 265 (270)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~s-~~g~ 265 (270)
+.+..+......+++++|. ++..
T Consensus 215 ~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 215 KLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp CEEEEEE-SSSSEEEEEEESTTSS
T ss_pred cEEEEEcCCCCCEEEEEEECCCCC
Confidence 7777777665689999995 4443
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.65 E-value=5.7e-05 Score=67.89 Aligned_cols=235 Identities=9% Similarity=-0.045 Sum_probs=122.3
Q ss_pred EEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCC------------CcceEEEEEeeCCCCCEEEEE-eCCCc
Q 024245 22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------------AHGIVSVATGPSIGLNKVISQ-GRDGT 87 (270)
Q Consensus 22 ~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~s~-~~d~~ 87 (270)
..+++++ ++.++++-+..+.|++||.. +..+..+..... -.....+++.+ +++.|+.+ ...+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--KKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--CCCEEEEEeCCCce
Confidence 4688887 46677777788899999976 444433322110 01257899998 77766554 45678
Q ss_pred EEEEEccCCccCCCC---c--cceeccc-------ceEEEEeeccCCccceecC--CCCceEEEeccCceeee-------
Q 024245 88 VKCWDIENGGLSSNP---S--LTIKTNS-------YHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDT------- 146 (270)
Q Consensus 88 i~~wd~~~~~~~~~~---~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------- 146 (270)
|+++|+.++...... . ....+.. .....+.+.......+... ...+..++...+.....
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999998765431100 0 0000000 0001122221111122222 22233344433322110
Q ss_pred ----------ccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccC-cCCC---CCC-ccc----CCCcee
Q 024245 147 ----------DSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN-SCGG---SPN-FSS----KGRGMC 207 (270)
Q Consensus 147 ----------~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~---~~~-h~~----~~~~~~ 207 (270)
.+.....++++|++..++++ ...++.|++||+.++......... .... ..+ ... ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVA-Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIA-DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEE-ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 01111118999999877764 455799999999876532111000 0000 000 000 001123
Q ss_pred eeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec--------------cCCCeeEEEeecCCCce
Q 024245 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--------------HLEPGLECSMWRNPITM 267 (270)
Q Consensus 208 ~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------~~~~v~~~~~s~~g~~l 267 (270)
..++ ++| +|. ++++-..++.|++||..+ +... .+.+ .-..+..|+++++|+++
T Consensus 807 ~Gva-vd~---dG~-LYVADs~N~rIrviD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 807 LGVL-CAK---DGQ-IYVADSYNHKIKKLDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred ceee-EeC---CCc-EEEEECCCCEEEEEECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 3555 776 455 788888899999999986 4432 2222 11357889999999753
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.53 E-value=1.7e-05 Score=62.26 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=65.5
Q ss_pred cccccEEEEEEeCCCCEEEEecCCC-cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGG-ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++..+ +...- +.|.++..++ +|++++.+.....|.+.|+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l--g~I~av~vs~--dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL--GNIEAVKVSP--DGKKVVVANDRFELWVIDID 431 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCc--cceEEEEEcC--CCcEEEEEcCceEEEEEEec
Confidence 5778898888888888899999999 89999998776554 44344 5699999999 99999999988899999999
Q ss_pred CCcc
Q 024245 95 NGGL 98 (270)
Q Consensus 95 ~~~~ 98 (270)
++..
T Consensus 432 ngnv 435 (668)
T COG4946 432 NGNV 435 (668)
T ss_pred CCCe
Confidence 9864
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.52 E-value=3.9e-05 Score=66.78 Aligned_cols=225 Identities=11% Similarity=0.048 Sum_probs=117.3
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
+.|.++.|.-++..++.+..+|.|.+-|.++....- ...-. .+|.+++|+| |++.++-.+.++++.+-...-.-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd--~GI~aaswS~--Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVD--NGISAASWSP--DEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeecc--CceEEEeecC--CCcEEEEEeCCcEEEEEeccccch
Confidence 589999999999988889999999999887654332 21122 6699999999 999998888887776543321111
Q ss_pred CCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeee--ccCCCCC-eEecCCCCeEEEE--ecCCC-
Q 024245 99 SSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDT--DSLCDSK-DDVPAEGPKYMAV--AGEQL- 171 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~s~~~~~~~~~--~~~~d- 171 (270)
...++. ..... ......+-+..... +-...+.....+....+.... ....|.. ++|.-||+++.+. +...+
T Consensus 144 ~E~~L~-~d~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 144 AEKPLD-ADDER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred hccccc-ccccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 111110 00000 00000111100000 000000000000000000000 1222333 8999999866541 11223
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe---cCCCcEEEEEcCCC--Cccee
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNP--GIPLT 246 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~---~~dg~i~vwd~~~~--~~~~~ 246 (270)
..|+|||.. |.+-..-. +..+.-.++. |-|.++ .+++- .+|+.|.++.-+.- +....
T Consensus 222 RkirV~drE-g~Lns~se------------~~~~l~~~Ls-WkPsgs----~iA~iq~~~sd~~IvffErNGL~hg~f~l 283 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSE------------PVEGLQHSLS-WKPSGS----LIAAIQCKTSDSDIVFFERNGLRHGEFVL 283 (1265)
T ss_pred eeEEEeccc-chhhcccC------------ccccccccee-ecCCCC----eEeeeeecCCCCcEEEEecCCcccccccc
Confidence 789999987 44322211 1233344555 999643 66665 35667989875421 11222
Q ss_pred eeeccCCCeeEEEeecCCCcee
Q 024245 247 AMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+......|..++|+.++..|+
T Consensus 284 ~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred CCcccccchheeeecCCCCcee
Confidence 2222233489999999988775
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.52 E-value=3.5e-07 Score=65.84 Aligned_cols=74 Identities=26% Similarity=0.458 Sum_probs=62.2
Q ss_pred ccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 19 ASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 19 ~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
..|.+++-+| ...++++|+.||.+.+||.++.. +...+..|. .+|..+.|+|. ++..|+++++||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk--~~i~eV~FHpk-~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHK--AEIWEVHFHPK-NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhh--hhhhheeccCC-CchheeEecCCCcEEEEcCCC
Confidence 3499999999 55588899999999999998763 344566787 66999999997 568999999999999999875
No 296
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.52 E-value=8.1e-07 Score=71.22 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=62.7
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
....|.|++++|+.+.|+.|..||+|.+||...+..... + .. -....++|+| +|..+++|+..|.+.+||+.-.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a~--~~P~~iaWHp--~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-AE--FIPTLIAWHP--DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-ec--ccceEEEEcC--CCcEEEEEcCCceEEEEEeecC
Confidence 567899999999999999999999999999876633322 2 22 3378999999 9999999999999999998754
Q ss_pred c
Q 024245 97 G 97 (270)
Q Consensus 97 ~ 97 (270)
.
T Consensus 332 p 332 (545)
T PF11768_consen 332 P 332 (545)
T ss_pred c
Confidence 3
No 297
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.50 E-value=4.8e-07 Score=81.02 Aligned_cols=121 Identities=23% Similarity=0.409 Sum_probs=91.8
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEec---CCCcEEEEeCCCC---ceeEEEeecCCCcceEEEEEeeCCCCCEEEE
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGT---TGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (270)
|+++...+-|.....+..|-. ..+++++ .++.+.+||.-.. ..+. ..|. ++++++++.| ..+.|++
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~--~gaT~l~~~P--~~qllis 2353 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHD--GGATVLAYAP--KHQLLIS 2353 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecC--CCceEEEEcC--cceEEEe
Confidence 588889999999999999976 5677764 4689999996432 3343 6677 6699999999 8889999
Q ss_pred EeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCC
Q 024245 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (270)
Q Consensus 82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 161 (270)
|+.+|.|++||++..++.. .++. +. ...
T Consensus 2354 ggr~G~v~l~D~rqrql~h----~~~~-----------------------------------------------~~-~~~ 2381 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRH----TFQA-----------------------------------------------LD-TRE 2381 (2439)
T ss_pred cCCcCcEEEeehHHHHHHH----Hhhh-----------------------------------------------hh-hhh
Confidence 9999999999999876533 2221 00 013
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 190 (270)
+++ +|+..|.|+||++..-..++.+..
T Consensus 2382 ~f~--~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2382 YFV--TGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred eee--ccCcccceEEEEccccchhhcCch
Confidence 333 688899999999998888888874
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=2.6e-05 Score=64.94 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=101.7
Q ss_pred cccccccEEEEEEeCC-------------CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeC---CCCC
Q 024245 14 LRGHRASVTDVCFHQT-------------KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS---IGLN 77 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~-------------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~ 77 (270)
|..|.+.|.-..+.-+ |++++|||.||.|.|-.+.+.+....+..+ .++.+++++|. +..+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~---rpiksial~Pd~~~~~sk 130 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK---RPIKSIALHPDFSRQQSK 130 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC---CcceeEEeccchhhhhhh
Confidence 4456666666555444 999999999999999999998888877776 66999999992 1146
Q ss_pred EEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEec
Q 024245 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (270)
Q Consensus 78 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 157 (270)
.+++|+..| +.++.-+--.... ++ ........+ .+++
T Consensus 131 ~fv~GG~ag-lvL~er~wlgnk~-~v-~l~~~eG~I----------------------------------------~~i~ 167 (846)
T KOG2066|consen 131 QFVSGGMAG-LVLSERNWLGNKD-SV-VLSEGEGPI----------------------------------------HSIK 167 (846)
T ss_pred heeecCcce-EEEehhhhhcCcc-ce-eeecCccce----------------------------------------EEEE
Confidence 799999988 7676432111100 00 111111111 1233
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC-CCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK-GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
..|. ++|- ++ |--|++||+.+++.+..++.+ +... .......+. |.+. . .|+.|=.| +|+|.
T Consensus 168 W~g~-lIAW-an-d~Gv~vyd~~~~~~l~~i~~p-------~~~~R~e~fpphl~-W~~~---~--~LVIGW~d-~v~i~ 230 (846)
T KOG2066|consen 168 WRGN-LIAW-AN-DDGVKVYDTPTRQRLTNIPPP-------SQSVRPELFPPHLH-WQDE---D--RLVIGWGD-SVKIC 230 (846)
T ss_pred ecCc-EEEE-ec-CCCcEEEeccccceeeccCCC-------CCCCCcccCCCceE-ecCC---C--eEEEecCC-eEEEE
Confidence 4454 4443 33 445899999999988888753 2111 122333455 8763 2 56666444 78888
Q ss_pred EcCC
Q 024245 237 DIRN 240 (270)
Q Consensus 237 d~~~ 240 (270)
.++.
T Consensus 231 ~I~~ 234 (846)
T KOG2066|consen 231 SIKK 234 (846)
T ss_pred EEec
Confidence 8773
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.45 E-value=6e-05 Score=60.44 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=101.9
Q ss_pred CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEE--EeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA--TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (270)
Q Consensus 31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 108 (270)
..++.++.++.|..||.++++.+..+..... ...+. -+|...+..++.+..++.+..+|.++++...........
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATGERLWTYSRVTP---ALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CEEEEECCCCeEEEEEcCCCceeeEEccCCC---ceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 3555666677788888877777666544321 11110 011001246777888899999999888654311100000
Q ss_pred ccceE-----EEEeecc-CCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCc
Q 024245 109 NSYHF-----CKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182 (270)
Q Consensus 109 ~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~ 182 (270)
..... ...++.. ..........+....++..+++.+-. ............+.++++ ++.+|.+..+|..++
T Consensus 223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~-~~~~~~~~p~~~~~~vyv--~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK-RDASSYQGPAVDDNRLYV--TDADGVVVALDRRSG 299 (377)
T ss_pred CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe-eccCCccCceEeCCEEEE--ECCCCeEEEEECCCC
Confidence 00000 0000000 00111111233344456655543221 111111122234555654 345899999999999
Q ss_pred ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (270)
Q Consensus 183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 254 (270)
+.+.+... ... ....+.. . .+. .|++++.+|.|+++|..+ ++.+..++.+...
T Consensus 300 ~~~W~~~~--------~~~---~~~ssp~-i-----~g~-~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~ 352 (377)
T TIGR03300 300 SELWKNDE--------LKY---RQLTAPA-V-----VGG-YLVVGDFEGYLHWLSRED-GSFVARLKTDGSG 352 (377)
T ss_pred cEEEcccc--------ccC---CccccCE-E-----ECC-EEEEEeCCCEEEEEECCC-CCEEEEEEcCCCc
Confidence 87766531 000 0111111 1 122 788899999999999998 8888888765543
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=4.2e-06 Score=70.45 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=100.5
Q ss_pred EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---------CCcEEEE
Q 024245 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---------DGTVKCW 91 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------d~~i~~w 91 (270)
|+-|+. +++++.+|...|+|.+-|.++.+.++++..|. +.|..+.. .|+.|++++. |..|+||
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs--~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS--GSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccc--cceeeeec----cCCeEEEeecccccccccccchhhhh
Confidence 444543 57899999999999999999999999999999 55877776 4589998876 4578999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d 171 (270)
|++..+.+. ...++..+.. +.|.|.=...++++.+ .
T Consensus 252 DLRmmral~--PI~~~~~P~f-----------------------------------------lrf~Psl~t~~~V~S~-s 287 (1118)
T KOG1275|consen 252 DLRMMRALS--PIQFPYGPQF-----------------------------------------LRFHPSLTTRLAVTSQ-S 287 (1118)
T ss_pred hhhhhhccC--CcccccCchh-----------------------------------------hhhcccccceEEEEec-c
Confidence 999876543 1222222111 2244543333443333 5
Q ss_pred ceEEEEeCCC-cce-eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 172 SEVEIWDLNT-AER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 172 ~~i~iwd~~~-~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
|...+-|..+ +++ ...+. - .+....+..+. ++++ |+ .++.|..+|.|.+|.-
T Consensus 288 Gq~q~vd~~~lsNP~~~~~~--------v--~p~~s~i~~fD-iSsn---~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 288 GQFQFVDTATLSNPPAGVKM--------V--NPNGSGISAFD-ISSN---GD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cceeeccccccCCCccceeE--------E--ccCCCcceeEE-ecCC---Cc-eEEEecccCcEeeecC
Confidence 8888888432 222 22221 1 11233477777 8874 55 9999999999999973
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.41 E-value=0.00014 Score=54.29 Aligned_cols=185 Identities=12% Similarity=0.101 Sum_probs=100.5
Q ss_pred CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC-Ccccee
Q 024245 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN-PSLTIK 107 (270)
Q Consensus 29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~ 107 (270)
++..+++++.++.|..||..+|+.+..+..... +...... .++.++.++.++.+..+|..+++.... .....+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---ISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC---GGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc---ccceeee---cccccccccceeeeEecccCCcceeeeecccccc
Confidence 456777778999999999999999888876332 2221222 336777777888999999999976541 000000
Q ss_pred cccc-eEEEEeeccCCcccee-cCCCCceEEEeccCceeeeccCCC-C------------CeEecCCCCeEEEEecCCCc
Q 024245 108 TNSY-HFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDSLCD-S------------KDDVPAEGPKYMAVAGEQLS 172 (270)
Q Consensus 108 ~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~s~~~~~~~~~~~~~d~ 172 (270)
.... ......+. ...... ...+....++..+++.+-...... . .-.+..++ .+++ +.. ++
T Consensus 109 ~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~-~g 183 (238)
T PF13360_consen 109 PAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYV-SSG-DG 183 (238)
T ss_dssp TCSTB--SEEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEE-ECC-TS
T ss_pred ccccccccCceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEE-EcC-CC
Confidence 0110 11111111 111222 224555667777776543321111 1 01111234 5554 333 45
Q ss_pred e-EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 173 E-VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 173 ~-i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
. +.+ |+.+++.+.+... .. .... ..+ ++. .|+.++.++.|..||+++ ++.+.
T Consensus 184 ~~~~~-d~~tg~~~w~~~~-------------~~-~~~~--~~~---~~~-~l~~~~~~~~l~~~d~~t-G~~~W 236 (238)
T PF13360_consen 184 RVVAV-DLATGEKLWSKPI-------------SG-IYSL--PSV---DGG-TLYVTSSDGRLYALDLKT-GKVVW 236 (238)
T ss_dssp SEEEE-ETTTTEEEEEECS-------------S--ECEC--EEC---CCT-EEEEEETTTEEEEEETTT-TEEEE
T ss_pred eEEEE-ECCCCCEEEEecC-------------CC-ccCC--cee---eCC-EEEEEeCCCEEEEEECCC-CCEEe
Confidence 4 555 9999986643221 11 1111 112 233 666666999999999999 66554
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.40 E-value=1.1e-05 Score=68.13 Aligned_cols=172 Identities=14% Similarity=0.125 Sum_probs=115.3
Q ss_pred CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (270)
Q Consensus 29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 108 (270)
++..++-|+-...+..+|+.+.+..+...... ..|.-|.. ++..+.+|...|+|.+-|.++.+.+. ++..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~ih----t~~a 215 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIH----TFDA 215 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC--CceEEEEe----cCcEEEeecccceEEeecCCcCceee----eeec
Confidence 34467777777788999999888887776555 33666665 34889999999999999999875433 6666
Q ss_pred ccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC--------CCceEEEEeCC
Q 024245 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE--------QLSEVEIWDLN 180 (270)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--------~d~~i~iwd~~ 180 (270)
+......+.+. |+ +++++|- .|.-|+|||+|
T Consensus 216 Hs~siSDfDv~----------------------------------------GN-lLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 216 HSGSISDFDVQ----------------------------------------GN-LLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred cccceeeeecc----------------------------------------CC-eEEEeecccccccccccchhhhhhhh
Confidence 66555444433 22 2222322 36779999999
Q ss_pred CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE---cCCCCcceeeeeccCCCeeE
Q 024245 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD---IRNPGIPLTAMKVHLEPGLE 257 (270)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd---~~~~~~~~~~~~~~~~~v~~ 257 (270)
..+.+.-+.. +-++ .-+ .|+|.-. . .++.++..|...+-| +.++..-+..+......+..
T Consensus 255 mmral~PI~~--------~~~P-----~fl-rf~Psl~--t-~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~ 317 (1118)
T KOG1275|consen 255 MMRALSPIQF--------PYGP-----QFL-RFHPSLT--T-RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA 317 (1118)
T ss_pred hhhccCCccc--------ccCc-----hhh-hhccccc--c-eEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence 8887666652 2111 112 3888632 2 788999999999999 44433334444444556999
Q ss_pred EEeecCCCcee
Q 024245 258 CSMWRNPITMS 268 (270)
Q Consensus 258 ~~~s~~g~~ls 268 (270)
+.+|++|..|.
T Consensus 318 fDiSsn~~ala 328 (1118)
T KOG1275|consen 318 FDISSNGDALA 328 (1118)
T ss_pred EEecCCCceEE
Confidence 99999998764
No 303
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=3.6e-06 Score=69.23 Aligned_cols=77 Identities=12% Similarity=0.197 Sum_probs=64.0
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc---------------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---------------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
....|++|+.+..++|.|+.||.++|-.+.+.. .-+++.+|. +.|.-+.|+. +.+.|-+..
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~--~sV~vvTWNe--~~QKLTtSD 90 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN--ASVMVVTWNE--NNQKLTTSD 90 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc--ceEEEEEecc--ccccccccC
Confidence 456899999998999999999999999886531 123567888 6699999998 778899999
Q ss_pred CCCcEEEEEccCCccC
Q 024245 84 RDGTVKCWDIENGGLS 99 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~ 99 (270)
.+|.|.+|-+-.+...
T Consensus 91 t~GlIiVWmlykgsW~ 106 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWC 106 (1189)
T ss_pred CCceEEEEeeecccHH
Confidence 9999999999887653
No 304
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.38 E-value=4.7e-05 Score=61.45 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=49.0
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
.+++|+.+.+++ |..||+|.+||...+..... + ..-....++ |+|++ . ++++|+..|.+
T Consensus 265 ca~sp~E~kLvl--GC~DgSiiLyD~~~~~t~~~-k-------------a~~~P~~ia-WHp~g---a-i~~V~s~qGel 323 (545)
T PF11768_consen 265 CARSPSEDKLVL--GCEDGSIILYDTTRGVTLLA-K-------------AEFIPTLIA-WHPDG---A-IFVVGSEQGEL 323 (545)
T ss_pred EecCcccceEEE--EecCCeEEEEEcCCCeeeee-e-------------ecccceEEE-EcCCC---c-EEEEEcCCceE
Confidence 778999988875 66799999999876543222 2 112344555 99964 4 99999999999
Q ss_pred EEEEcCC
Q 024245 234 LVWDIRN 240 (270)
Q Consensus 234 ~vwd~~~ 240 (270)
.+||+.-
T Consensus 324 Q~FD~AL 330 (545)
T PF11768_consen 324 QCFDMAL 330 (545)
T ss_pred EEEEeec
Confidence 9999864
No 305
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.32 E-value=1.2e-06 Score=44.47 Aligned_cols=38 Identities=29% Similarity=0.657 Sum_probs=34.5
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEe
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 46 (270)
+++..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677888999999999999999999999999999996
No 306
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.6e-05 Score=63.46 Aligned_cols=141 Identities=11% Similarity=0.081 Sum_probs=89.8
Q ss_pred eEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCcee
Q 024245 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV 144 (270)
Q Consensus 65 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (270)
=+-+.||| .|.+|+|-...| |.+|--.+-.... .+.......
T Consensus 213 etyv~wSP--~GTYL~t~Hk~G-I~lWGG~~f~r~~----RF~Hp~Vq~------------------------------- 254 (698)
T KOG2314|consen 213 ETYVRWSP--KGTYLVTFHKQG-IALWGGESFDRIQ----RFYHPGVQF------------------------------- 254 (698)
T ss_pred eeeEEecC--CceEEEEEeccc-eeeecCccHHHHH----hccCCCcee-------------------------------
Confidence 35789999 999999998877 7789655433221 111111111
Q ss_pred eeccCCCCCeEecCCCCeEEEEecC---------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245 145 DTDSLCDSKDDVPAEGPKYMAVAGE---------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (270)
Q Consensus 145 ~~~~~~~~~~~~s~~~~~~~~~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p 215 (270)
+.|||+.+||+-.+.. +...+.|||+++|...+.|.. .. .....+.+-.||.
T Consensus 255 ---------idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~--------~~--~~~~~WP~frWS~ 315 (698)
T KOG2314|consen 255 ---------IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV--------IK--SPYLKWPIFRWSH 315 (698)
T ss_pred ---------eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceec--------cC--CCccccceEEecc
Confidence 4578888777644322 225799999999999888873 11 1223444445887
Q ss_pred CCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 216 SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 216 ~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+ +. |+|.-.. ..|.||+... -.++..-.---..|....|+|.+.+|.
T Consensus 316 D---dK-y~Arm~~-~sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 316 D---DK-YFARMTG-NSISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred C---Cc-eeEEecc-ceEEEEecCc-eeeecccccCCccccCcccCCCcceEE
Confidence 5 43 7777665 5789998776 333322222235788999999987764
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=9.1e-06 Score=63.22 Aligned_cols=214 Identities=14% Similarity=0.083 Sum_probs=124.2
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC--C-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CCcEEEEE
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--H-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKCWD 92 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd 92 (270)
|++.|+-+.-.. .+++.+++.||.++.|--.. + +.+..+..|. ..|.+++.+- ++.++.|.+. |..++++|
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL--~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL--GVILSLAVSY--DGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHH--HHHHhhhccc--cceeEeeccCcccceeEEE
Confidence 777777766544 45999999999999997543 1 3444556666 5688999888 8888889887 99999999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCcc---ceecCCCCceEEEeccCceeee-ccCCCCC----eEecCCCCeEE
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA---NAKQANEPKDCYEREVGETVDT-DSLCDSK----DDVPAEGPKYM 164 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~s~~~~~~~ 164 (270)
+++-.... ...+...+...+.....+.... ......+...++|-........ ...-|.. +.+.+.+...+
T Consensus 83 vEn~Dmin--miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 83 VENFDMIN--MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred eeccchhh--hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence 98765432 2222222222222222221111 1222233344444333322111 1122222 56777777554
Q ss_pred EEecCCCceEEEEeCCC------cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 165 AVAGEQLSEVEIWDLNT------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
+....|.|.-|.... .+....++ ......+.. .-.....++. |+|++. .+.+-+.|..|+++++
T Consensus 161 --SiD~~gmVEyWs~e~~~qfPr~~l~~~~K--~eTdLy~f~-K~Kt~pts~E-fsp~g~----qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 161 --SIDISGMVEYWSAEGPFQFPRTNLNFELK--HETDLYGFP-KAKTEPTSFE-FSPDGA----QISTLNPDRKVRGFVF 230 (558)
T ss_pred --eccccceeEeecCCCcccCcccccccccc--ccchhhccc-ccccCccceE-EccccC----cccccCcccEEEEEEe
Confidence 566679999998762 11111111 000000110 1133456676 999643 8899999999999999
Q ss_pred CCCCcceeee
Q 024245 239 RNPGIPLTAM 248 (270)
Q Consensus 239 ~~~~~~~~~~ 248 (270)
++ ++.++.+
T Consensus 231 Kt-Gklvqei 239 (558)
T KOG0882|consen 231 KT-GKLVQEI 239 (558)
T ss_pred cc-chhhhhh
Confidence 98 6655444
No 308
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.26 E-value=0.00021 Score=57.34 Aligned_cols=184 Identities=15% Similarity=0.120 Sum_probs=89.5
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 109 (270)
+..++.++.++.+..+|..+|+.+....... .+.+.-.. .++.++.++.++.|..||.++++... .....
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W----~~~~~ 174 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS---EVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLW----TYSRV 174 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc---eeecCCEE---ECCEEEEECCCCeEEEEEcCCCceee----EEccC
Confidence 3455555666666666666666555443221 12211111 23566677778888999988876543 11111
Q ss_pred cceE-----EEEeeccCCccceecCCCCceEEEeccCceeeec-cC---CCCC------eEecC--CCCeEEEEecCCCc
Q 024245 110 SYHF-----CKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SL---CDSK------DDVPA--EGPKYMAVAGEQLS 172 (270)
Q Consensus 110 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~------~~~s~--~~~~~~~~~~~~d~ 172 (270)
.... ....... .........+....++..+++.+-.. .. +... +.-+| .+..+++ ++.+|
T Consensus 175 ~~~~~~~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~--~~~~g 251 (377)
T TIGR03300 175 TPALTLRGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA--VSYQG 251 (377)
T ss_pred CCceeecCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE--EEcCC
Confidence 0000 0000000 11111111223334555555432111 00 0000 00011 2345554 33579
Q ss_pred eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
.++.||..+++.+..... .. ..... .. ++ .++.++.||.|+.+|..+ ++.+...
T Consensus 252 ~l~a~d~~tG~~~W~~~~-------------~~-~~~p~-~~----~~--~vyv~~~~G~l~~~d~~t-G~~~W~~ 305 (377)
T TIGR03300 252 RVAALDLRSGRVLWKRDA-------------SS-YQGPA-VD----DN--RLYVTDADGVVVALDRRS-GSELWKN 305 (377)
T ss_pred EEEEEECCCCcEEEeecc-------------CC-ccCce-Ee----CC--EEEEECCCCeEEEEECCC-CcEEEcc
Confidence 999999999987766551 00 11111 11 23 677788999999999988 6655544
No 309
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=4.2e-06 Score=66.86 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=90.6
Q ss_pred EEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCc
Q 024245 54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133 (270)
Q Consensus 54 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (270)
..+.+|. ..|..++--. +.+-+++++.|++|++|.++...-.. ....|.+
T Consensus 729 ~nf~GH~--~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~---------~tsaCQf----------------- 778 (1034)
T KOG4190|consen 729 CNFTGHQ--EKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEI---------GTSACQF----------------- 778 (1034)
T ss_pred ecccCcH--HHhHHHHhcc--cccceeeccCCceEEEEEeccccCcc---------ccceeee-----------------
Confidence 3456676 5588777666 67899999999999999997532111 0011111
Q ss_pred eEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeee
Q 024245 134 DCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA 209 (270)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 209 (270)
+++.|.. +.|-.+-+++ + + .||.|++||.--++++.++.... .|. ..+.+.+
T Consensus 779 -------------TY~aHkk~i~~igfL~~lr~i-~-S--cD~giHlWDPFigr~Laq~~dap-----k~~--a~~~ikc 834 (1034)
T KOG4190|consen 779 -------------TYQAHKKPIHDIGFLADLRSI-A-S--CDGGIHLWDPFIGRLLAQMEDAP-----KEG--AGGNIKC 834 (1034)
T ss_pred -------------EhhhccCcccceeeeecccee-e-e--ccCcceeecccccchhHhhhcCc-----ccC--CCceeEe
Confidence 1111111 3344444433 2 3 37999999998888777655311 121 1223333
Q ss_pred eeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee-----ccCCCeeEEEeecCCCcee
Q 024245 210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 210 ~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~s~~g~~ls 268 (270)
+. +- +....++.++...+|+++|.+. .+-...++ +....+.+++..+.|..|.
T Consensus 835 l~----nv-~~~iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lA 892 (1034)
T KOG4190|consen 835 LE----NV-DRHILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGNKLA 892 (1034)
T ss_pred cc----cC-cchheeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeEEEeccCcchhh
Confidence 32 10 2332444447889999999998 44333333 3446678899998887653
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=1.7e-06 Score=72.73 Aligned_cols=186 Identities=10% Similarity=0.138 Sum_probs=107.7
Q ss_pred eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeecc--CCccceecC
Q 024245 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--EPYANAKQA 129 (270)
Q Consensus 52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 129 (270)
..+.|..+. ..-+|++|+- +.++|+.|+..|.|++|++.+|.... ....+......+.+.. +........
T Consensus 1093 ~w~~frd~~--~~fTc~afs~--~~~hL~vG~~~Geik~~nv~sG~~e~----s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1093 SWRSFRDET--ALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSSGSMEE----SVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred cchhhhccc--cceeeEEeec--CCceEEeeeccceEEEEEccCccccc----cccccccccccccccCCcceeeeeccc
Confidence 344555565 6689999999 88999999999999999999986543 2222222222222222 111111111
Q ss_pred CC-CceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceee
Q 024245 130 NE-PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM 208 (270)
Q Consensus 130 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 208 (270)
.. ...+|+....-..+..+.+...+.|+..-..-++ |.......|||+.++..+.++-. +-.. ..-.-.
T Consensus 1165 S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~--gt~~d~a~~YDvqT~~~l~tylt-------~~~~-~~y~~n 1234 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRAL--GTEADDALLYDVQTCSPLQTYLT-------DTVT-SSYSNN 1234 (1516)
T ss_pred cCchHHHhccccccCccccccccceeehhhhHHHHHh--cccccceEEEecccCcHHHHhcC-------cchh-hhhhcc
Confidence 11 3345666554444444444444778766443343 33346689999999998887442 1111 111113
Q ss_pred eeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 209 ~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
.. .|+|++. +++- || .+||++. .+.+..|...+..+ .-.|+|+|..+
T Consensus 1235 ~a-~FsP~D~----LIln---dG--vLWDvR~-~~aIh~FD~ft~~~-~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1235 LA-HFSPCDT----LILN---DG--VLWDVRI-PEAIHRFDQFTDYG-GGGFHPSGNEV 1281 (1516)
T ss_pred cc-ccCCCcc----eEee---Cc--eeeeecc-HHHHhhhhhheecc-cccccCCCceE
Confidence 33 4999632 4432 33 5899998 57777776555332 34588877643
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.20 E-value=0.0013 Score=49.98 Aligned_cols=222 Identities=12% Similarity=0.093 Sum_probs=116.3
Q ss_pred EEEEEeC-CCCEEEEecCCCc-EEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-----CCCcEEEEEcc
Q 024245 22 TDVCFHQ-TKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-----RDGTVKCWDIE 94 (270)
Q Consensus 22 ~~~~~s~-~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----~d~~i~~wd~~ 94 (270)
..++.+| .+..++.+-+-|+ ..+||..+++..+.+.......--=.-.|++ +|++|++.- ..|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~--dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP--DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC--CCCEEEEeccccCCCcEEEEEEECc
Confidence 3577888 5667777777664 6789999998887775443221122457999 999999763 35789999998
Q ss_pred CCccCCCCccceecccceEEEEeeccCCccceecCCC-------------------CceEEEeccCceeee-cc--CCCC
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE-------------------PKDCYEREVGETVDT-DS--LCDS 152 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~-~~--~~~~ 152 (270)
.+ ..+ +-.+..+....-.+.+........++.++ ...+.|..+++.+.. .+ .-|.
T Consensus 86 ~~-~~r--i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RG-YRR--IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred CC-cEE--EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 32 111 22333332222112222222112222221 122234455554443 22 1222
Q ss_pred C----eEecCCCCeEEEEecCCCc-------eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245 153 K----DDVPAEGPKYMAVAGEQLS-------EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 221 (270)
Q Consensus 153 ~----~~~s~~~~~~~~~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~ 221 (270)
. +++.++|.-+++ .-..| -|-+++. ++.+..+..+. .-......++-+++ +++ ++.
T Consensus 163 lSiRHLa~~~~G~V~~a--~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~-----~~~~~l~~Y~gSIa-~~~---~g~ 229 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFA--MQYQGDPGDAPPLVALHRR--GGALRLLPAPE-----EQWRRLNGYIGSIA-ADR---DGR 229 (305)
T ss_pred cceeeEEecCCCcEEEE--EecCCCCCccCCeEEEEcC--CCcceeccCCh-----HHHHhhCCceEEEE-EeC---CCC
Confidence 2 778888753332 22222 1223322 22222222100 00112345788887 887 455
Q ss_pred eEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 222 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g 264 (270)
...+|+=..|.+.+||..+ ++.+....- ..+..++-.+++
T Consensus 230 ~ia~tsPrGg~~~~~d~~t-g~~~~~~~l--~D~cGva~~~~~ 269 (305)
T PF07433_consen 230 LIAVTSPRGGRVAVWDAAT-GRLLGSVPL--PDACGVAPTDDG 269 (305)
T ss_pred EEEEECCCCCEEEEEECCC-CCEeecccc--CceeeeeecCCc
Confidence 3556666778999999998 776655542 234445555544
No 312
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.19 E-value=8.5e-05 Score=59.84 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=57.0
Q ss_pred eEecCCCCeEEEEecCCCce--EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245 154 DDVPAEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg 231 (270)
-.|+|||+++++ +...||. |.++|+..++ ...+.. ..+....-. |+| ||+.++++.+..|
T Consensus 243 P~fspDG~~l~f-~~~rdg~~~iy~~dl~~~~-~~~Lt~------------~~gi~~~Ps-~sp---dG~~ivf~Sdr~G 304 (425)
T COG0823 243 PAFSPDGSKLAF-SSSRDGSPDIYLMDLDGKN-LPRLTN------------GFGINTSPS-WSP---DGSKIVFTSDRGG 304 (425)
T ss_pred ccCCCCCCEEEE-EECCCCCccEEEEcCCCCc-ceeccc------------CCccccCcc-CCC---CCCEEEEEeCCCC
Confidence 569999988776 4555675 5556777666 333441 111122333 998 5665667777777
Q ss_pred cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 232 SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.-.||-....+.....+......-..-.|||||++|.
T Consensus 305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEE
Confidence 6555544332333344443333333788999999875
No 313
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.17 E-value=0.0013 Score=48.91 Aligned_cols=205 Identities=10% Similarity=0.050 Sum_probs=105.9
Q ss_pred ccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 13 VLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
.+.+-...+.+++|+|+ +.++++....+.|...+.+ |+.++.+..... +-...|++.. ++.++++--.++.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~-~D~EgI~y~g--~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGF-GDYEGITYLG--NGRYVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-S--TTEEEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCC-CCceeEEEEC--CCEEEEEEcCCCcEEEE
Confidence 45565667999999996 5577778888888888864 788887765442 4478999987 76666666668999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d 171 (270)
++....... ... . ...+.+.... ..-.+-+.++|.+.+..++++. +.
T Consensus 92 ~~~~~~~~~----~~~--~--~~~~~l~~~~-----------------------~~N~G~EGla~D~~~~~L~v~k--E~ 138 (248)
T PF06977_consen 92 TIDDDTTSL----DRA--D--VQKISLGFPN-----------------------KGNKGFEGLAYDPKTNRLFVAK--ER 138 (248)
T ss_dssp EE----TT------EE--E--EEEEE---S--------------------------SS--EEEEEETTTTEEEEEE--ES
T ss_pred EEecccccc----chh--h--ceEEeccccc-----------------------CCCcceEEEEEcCCCCEEEEEe--CC
Confidence 986542110 000 0 1111111100 0000111178989888888753 33
Q ss_pred ceEEEEeCCC---cceeeeeccCcCCCCCCcc--cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 172 SEVEIWDLNT---AERCTRLHQNSCGGSPNFS--SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 172 ~~i~iwd~~~---~~~~~~~~~~~~~~~~~h~--~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
.-..||.++. ...+...... .+. ........++. ++|. .+. +++....+..|..+|.. ++++.
T Consensus 139 ~P~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~S~l~-~~p~--t~~-lliLS~es~~l~~~d~~--G~~~~ 206 (248)
T PF06977_consen 139 KPKRLYEVNGFPGGFDLFVSDDQ------DLDDDKLFVRDLSGLS-YDPR--TGH-LLILSDESRLLLELDRQ--GRVVS 206 (248)
T ss_dssp SSEEEEEEESTT-SS--EEEE-H------HHH-HT--SS---EEE-EETT--TTE-EEEEETTTTEEEEE-TT----EEE
T ss_pred CChhhEEEccccCccceeecccc------ccccccceeccccceE-EcCC--CCe-EEEEECCCCeEEEECCC--CCEEE
Confidence 4455665543 1111111100 010 01122355666 8886 566 77778888999999944 67666
Q ss_pred eeeccC---------CCeeEEEeecCCCc
Q 024245 247 AMKVHL---------EPGLECSMWRNPIT 266 (270)
Q Consensus 247 ~~~~~~---------~~v~~~~~s~~g~~ 266 (270)
.+.-.. ...-.|+|.++|.+
T Consensus 207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~L 235 (248)
T PF06977_consen 207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNL 235 (248)
T ss_dssp EEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred EEEeCCcccCcccccCCccEEEECCCCCE
Confidence 554322 24678999999965
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00056 Score=57.90 Aligned_cols=200 Identities=13% Similarity=0.110 Sum_probs=106.0
Q ss_pred EEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc-----EEEEEccCCccC
Q 024245 25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT-----VKCWDIENGGLS 99 (270)
Q Consensus 25 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~-----i~~wd~~~~~~~ 99 (270)
+|++.+..+|.|+.+|.|.+.+-. -+.++.++.+.. +.|..+.... ..++|++.++|+. +++||++.....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~-siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQ-SIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecch-hhhhHhhccc--CceEEEEEeecCCCCceEEEEecccccCCC
Confidence 356778899999999998887732 455577777763 2244444444 4478888887764 899999765322
Q ss_pred CCCccc---------eecccceEEEEeeccCCccceecCCCCceEEE-----eccCceee--eccCCCCC---eEecCCC
Q 024245 100 SNPSLT---------IKTNSYHFCKLSLVKEPYANAKQANEPKDCYE-----REVGETVD--TDSLCDSK---DDVPAEG 160 (270)
Q Consensus 100 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~---~~~s~~~ 160 (270)
..|... .+..+...+.+.+... ....+.|-..+.+- +...+..+ ....+... +++..++
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 112111 1222333333333332 22333332222222 21222111 12223333 7888888
Q ss_pred Ce-EEEEecCCCceEEEEeCCCcceeee-eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 161 PK-YMAVAGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 161 ~~-~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
.. +++++. ..|.+|.+....+... +. .| .....+.. |++. .+ .+++++ +.-+.+||.
T Consensus 184 ~s~lFv~Tt---~~V~~y~l~gr~p~~~~ld--------~~----G~~lnCss-~~~~--t~--qfIca~-~e~l~fY~s 242 (933)
T KOG2114|consen 184 KSVLFVATT---EQVMLYSLSGRTPSLKVLD--------NN----GISLNCSS-FSDG--TY--QFICAG-SEFLYFYDS 242 (933)
T ss_pred ceeEEEEec---ceeEEEEecCCCcceeeec--------cC----Cccceeee-cCCC--Cc--cEEEec-CceEEEEcC
Confidence 77 444333 5799999883332222 33 22 22344443 6653 12 244444 347999998
Q ss_pred CCCCcceeeee-ccC
Q 024245 239 RNPGIPLTAMK-VHL 252 (270)
Q Consensus 239 ~~~~~~~~~~~-~~~ 252 (270)
.. ..+...+. +|.
T Consensus 243 d~-~~~cfaf~~g~k 256 (933)
T KOG2114|consen 243 DG-RGPCFAFEVGEK 256 (933)
T ss_pred CC-cceeeeecCCCe
Confidence 86 55555555 554
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.11 E-value=0.0005 Score=57.11 Aligned_cols=182 Identities=11% Similarity=0.062 Sum_probs=100.3
Q ss_pred EeCCCCEEEE-ecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---CC-cEEEEEccCCccCC
Q 024245 26 FHQTKPILFA-GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DG-TVKCWDIENGGLSS 100 (270)
Q Consensus 26 ~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~-~i~~wd~~~~~~~~ 100 (270)
+.|||+.+.. .-..+.+.+.|.++.+....+.... ....++++| +|.++++.+. .+ ++..-+......
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d~-- 272 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERDW-- 272 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC---CcccceECC--CCCEEEEeccCcccCcceeeeccccCce--
Confidence 4556665433 3335667778888776666655442 246778889 8888877753 21 222222211110
Q ss_pred CCccceecccceEEEEeeccCCccceecCCCCceEEEecc-----CceeeeccCCCCC--eEecCCCCeEEEEecCCCce
Q 024245 101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-----GETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSE 173 (270)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~ 173 (270)
...+.-.. .. .......... ..++.+..+|..+ .+.......+... +.++|||+++++ ++..+.+
T Consensus 273 --~vvfni~~--ie--a~vkdGK~~~-V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyV-anklS~t 344 (635)
T PRK02888 273 --VVVFNIAR--IE--EAVKAGKFKT-IGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIA-NGKLSPT 344 (635)
T ss_pred --EEEEchHH--HH--HhhhCCCEEE-ECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEE-eCCCCCc
Confidence 00000000 00 0000000111 1234455667666 3344444555555 999999998886 5667899
Q ss_pred EEEEeCCCcce------------eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 174 VEIWDLNTAER------------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 174 i~iwd~~~~~~------------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
|.|+|+.+.+. ..+.+. .......+ |.+ +|. ...|-.-|..|..||+..
T Consensus 345 VSVIDv~k~k~~~~~~~~~~~~vvaevev-------------GlGPLHTa-FDg---~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 345 VTVIDVRKLDDLFDGKIKPRDAVVAEPEL-------------GLGPLHTA-FDG---RGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEEEChhhhhhhhccCCccceEEEeecc-------------CCCcceEE-ECC---CCC-EEEeEeecceeEEEehHH
Confidence 99999987553 222221 11122333 876 454 788888999999999875
No 316
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.10 E-value=0.0005 Score=61.01 Aligned_cols=94 Identities=11% Similarity=0.075 Sum_probs=53.2
Q ss_pred eEecCCCCeEEEEecC--CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245 154 DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg 231 (270)
++|.|.|. +++++-. ....|.+|.- .|..-..|..+ . .+....+..+. |+++ +. .||..-.|.
T Consensus 262 l~WrPsG~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~-------~-~~~~~~v~~l~-Wn~d---s~-iLAv~~~~~ 326 (928)
T PF04762_consen 262 LSWRPSGN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLR-------F-DPEEEKVIELA-WNSD---SE-ILAVWLEDR 326 (928)
T ss_pred ccCCCCCC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecC-------C-CCCCceeeEEE-ECCC---CC-EEEEEecCC
Confidence 67999996 4443322 1245666654 35555555421 1 12344678888 9985 43 777776554
Q ss_pred cEEEEEcCCCC-cceeeeecc-CCCeeEEEeecC
Q 024245 232 SILVWDIRNPG-IPLTAMKVH-LEPGLECSMWRN 263 (270)
Q Consensus 232 ~i~vwd~~~~~-~~~~~~~~~-~~~v~~~~~s~~ 263 (270)
|.+|-..+-. -..+.+... ...+..+.|+|.
T Consensus 327 -vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 327 -VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred -ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 9999887622 122333322 233455888875
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=1.2e-06 Score=70.90 Aligned_cols=186 Identities=18% Similarity=0.203 Sum_probs=109.5
Q ss_pred cccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCce--eEEEeecCCCcceEEEEEeeCCCCCEEEEEeC----CCcEE
Q 024245 18 RASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----DGTVK 89 (270)
Q Consensus 18 ~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----d~~i~ 89 (270)
...+.|+++.. +..+++.|..+|.|.+-..+...- ....+.+. .++++++|++- |.+.|+.|-. |-.+.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a--r~Ct~lAwneL-Dtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA--RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc--ccccccccccc-cHHHHHhhhhhhcccCCcc
Confidence 45677888766 335889999999999998865432 22334455 66999999985 5577777632 45799
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 169 (270)
+||+.++-... .....+. - . .+.+...++|-.+.+ +++ +|.
T Consensus 133 Iwdi~s~ltvP-------ke~~~fs---~-~--------------------------~l~gqns~cwlrd~k-lvl-aGm 173 (783)
T KOG1008|consen 133 IWDINSLLTVP-------KESPLFS---S-S--------------------------TLDGQNSVCWLRDTK-LVL-AGM 173 (783)
T ss_pred ceecccccCCC-------ccccccc---c-c--------------------------cccCccccccccCcc-hhh-ccc
Confidence 99998863211 0000000 0 0 111111144554544 333 577
Q ss_pred CCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE-cCCCCcceee
Q 024245 170 QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD-IRNPGIPLTA 247 (270)
Q Consensus 170 ~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd-~~~~~~~~~~ 247 (270)
....++++|++... ....+..+ -| .+... ..|+|+ |+++-. ||.|-+|| .++...++..
T Consensus 174 ~sr~~~ifdlRqs~~~~~svnTk------~v----qG~tV--dp~~~n------Y~cs~~-dg~iAiwD~~rnienpl~~ 234 (783)
T KOG1008|consen 174 TSRSVHIFDLRQSLDSVSSVNTK------YV----QGITV--DPFSPN------YFCSNS-DGDIAIWDTYRNIENPLQI 234 (783)
T ss_pred ccchhhhhhhhhhhhhhhhhhhh------hc----cccee--cCCCCC------ceeccc-cCceeeccchhhhccHHHH
Confidence 77899999998332 22222210 11 12221 136653 666655 99999999 5555556665
Q ss_pred eeccCC----CeeEEEeecCC
Q 024245 248 MKVHLE----PGLECSMWRNP 264 (270)
Q Consensus 248 ~~~~~~----~v~~~~~s~~g 264 (270)
+..... .+..++|.|..
T Consensus 235 i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 235 ILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred HhhCCCCcccceeeEEeccCC
Confidence 553333 38899999854
No 318
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.08 E-value=2.8e-05 Score=57.83 Aligned_cols=144 Identities=16% Similarity=0.218 Sum_probs=85.7
Q ss_pred ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc---eeEEEeecCCC---cceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAA---HGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
..|.--|++++|+.|.+.++++. |-.|.+|+++--. .+--++.|..+ .-|++..|+|... +.+.-.+..|.|
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~I 246 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEI 246 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcE
Confidence 56888899999999998888875 5679999986422 12222233211 3478899999633 667777888999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 168 (270)
++-|++...+...+...+...... ....+-.. ....-..+.|+++|++++ +-
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~---v~~~ff~e-----------------------ivsSISD~kFs~ngryIl--sR 298 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDG---VDVDFFEE-----------------------IVSSISDFKFSDNGRYIL--SR 298 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCc---ccchhHHH-----------------------HhhhhcceEEcCCCcEEE--Ee
Confidence 999998654322111111100000 00000000 000000156999998765 34
Q ss_pred CCCceEEEEeCCCc-ceeeeec
Q 024245 169 EQLSEVEIWDLNTA-ERCTRLH 189 (270)
Q Consensus 169 ~~d~~i~iwd~~~~-~~~~~~~ 189 (270)
+ --+++|||.+.. .++.++.
T Consensus 299 d-yltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 299 D-YLTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred c-cceEEEEecccccCCceeec
Confidence 3 479999999864 4677764
No 319
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.06 E-value=6.9e-05 Score=62.51 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=97.8
Q ss_pred cceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCc
Q 024245 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (270)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (270)
..-.++.|+| . .+|+-|+. ..|.+-|..+.+.++ .++.+......+.+...+...
T Consensus 16 sN~~A~Dw~~--~-GLiAygsh-slV~VVDs~s~q~iq----sie~h~s~V~~VrWap~~~p~----------------- 70 (1062)
T KOG1912|consen 16 SNRNAADWSP--S-GLIAYGSH-SLVSVVDSRSLQLIQ----SIELHQSAVTSVRWAPAPSPR----------------- 70 (1062)
T ss_pred ccccccccCc--c-ceEEEecC-ceEEEEehhhhhhhh----ccccCccceeEEEeccCCCch-----------------
Confidence 3357889998 5 56666654 468889988876654 444444444333333221110
Q ss_pred eeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCce
Q 024245 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (270)
Q Consensus 143 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~ 222 (270)
--+||....++++++...|.|.+||...+..+..+. .|.. .+..++ |-|...+.+.
T Consensus 71 -----------~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~--------~~~~----~~qdl~-W~~~rd~Srd 126 (1062)
T KOG1912|consen 71 -----------DLLSPSSSQLLIASADISGRIILVDFVLASVINWLS--------HSND----SVQDLC-WVPARDDSRD 126 (1062)
T ss_pred -----------hccCccccceeEEeccccCcEEEEEehhhhhhhhhc--------CCCc----chhhee-eeeccCcchh
Confidence 125555455677788889999999999888887777 3433 345555 7766556654
Q ss_pred EEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
+|++-.....|.+|+..+ |+.++..........++.+.|
T Consensus 127 ~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDP 165 (1062)
T ss_pred eeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCC
Confidence 777777788999999999 777776665444555577766
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00015 Score=61.25 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=61.8
Q ss_pred EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|. .+|..+.|++ +|+.++++..-|.+.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~--a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP--APIQGLDWSH--DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC--CCceeEEecC--CCCeEEEcCCCceeEEEEeee
Confidence 5679999988899999999999999988766665555676 7799999999 999999999999999998763
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.04 E-value=4.3e-06 Score=67.79 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=98.4
Q ss_pred cccccccEEEEEEeC-CCCEEEEec----CCCcEEEEeCCCC--ceeE--EEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 14 LRGHRASVTDVCFHQ-TKPILFAGT----TGGELRIWDTVQH--RTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~-~~~~l~s~~----~dg~i~vwd~~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
..+|....++++|++ |...||+|- .|..+.|||+.++ .+.. .+.+. ......+++|.. +..++++|..
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~-~l~gqns~cwlr--d~klvlaGm~ 174 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS-TLDGQNSVCWLR--DTKLVLAGMT 174 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc-cccCcccccccc--Ccchhhcccc
Confidence 446778899999999 667888773 3678999999876 2222 22221 114567889986 8788889999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeecc-CCccceecCCCCceEEEe-ccCceeeeccC--------CCCCe
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYER-EVGETVDTDSL--------CDSKD 154 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~ 154 (270)
.+.++++|++...... ..+.+. ....+.+.. .+........+...+||. ..-+.+..... .+..+
T Consensus 175 sr~~~ifdlRqs~~~~---~svnTk--~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ 249 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSV---SSVNTK--YVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL 249 (783)
T ss_pred cchhhhhhhhhhhhhh---hhhhhh--hcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence 9999999998432111 111111 111122222 344444555667777883 33222221111 11128
Q ss_pred EecCCCCeEEEEecCCCceEEEEeCC
Q 024245 155 DVPAEGPKYMAVAGEQLSEVEIWDLN 180 (270)
Q Consensus 155 ~~s~~~~~~~~~~~~~d~~i~iwd~~ 180 (270)
+|+|....++++..-+.++|+++|+.
T Consensus 250 aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 250 AYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred EeccCCcchhhhhccCcceEEEeccc
Confidence 99998877787666677899999986
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.04 E-value=0.0025 Score=47.44 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=79.4
Q ss_pred CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEee
Q 024245 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL 118 (270)
Q Consensus 39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (270)
+|.|..||..+|+.+.............+..+ + +++.+++++.++.|..||..+++... ...+....... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~l~~~d~~tG~~~W--~~~~~~~~~~~--~~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P--DGGRVYVASGDGNLYALDAKTGKVLW--RFDLPGPISGA--PVV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E--ETTEEEEEETTSEEEEEETTTSEEEE--EEECSSCGGSG--EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E--eCCEEEEEcCCCEEEEEECCCCCEEE--Eeeccccccce--eee
Confidence 68899999999999988865221122222233 2 34778888899999999999997643 11111110010 011
Q ss_pred ccCCccceecCCCCceEEEeccCceeeec-cCC---CC---CeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245 119 VKEPYANAKQANEPKDCYEREVGETVDTD-SLC---DS---KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~---~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 189 (270)
.. .........+....++..+++..-.. ... .. .......+..+++.. .++.|..+|+++|+.+....
T Consensus 75 ~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 75 DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT--SSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE--TCSEEEEEETTTTEEEEEEE
T ss_pred cc-cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe--ccCcEEEEecCCCcEEEEee
Confidence 11 11111112234455666666654431 211 11 133334466666533 36999999999999988877
No 323
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4e-05 Score=62.22 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=69.5
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceE-EEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
-...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..++ ..+. +++|.| ||+.|+.|-.||+|++-|+++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~--~~v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPG--ENVTASLCWRP--DGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCC--CccceeeeecC--CCCEEEEEecCCeEEEEEccC
Confidence 34578889999999999999999999999998 78888888666 4466 999999 999999999999999999999
Q ss_pred CccCC
Q 024245 96 GGLSS 100 (270)
Q Consensus 96 ~~~~~ 100 (270)
+..+.
T Consensus 94 ~~~l~ 98 (665)
T KOG4640|consen 94 GGRLV 98 (665)
T ss_pred CCcee
Confidence 87654
No 324
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.0014 Score=53.06 Aligned_cols=163 Identities=12% Similarity=0.020 Sum_probs=90.2
Q ss_pred cccEEEEEEeCCCCEEEEe---cCC-CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEE--E
Q 024245 18 RASVTDVCFHQTKPILFAG---TTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVK--C 90 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~---~~d-g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~--~ 90 (270)
...+..-+|+|++..++-- ... ..+.++++++++....+... ..-..-+|+| +|++|+ +...||... +
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fsp--DG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSP--DGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCC--CCCEEEEEECCCCCccEEE
Confidence 4556677899988754433 223 46999999988766655533 2246788999 988876 666777554 5
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEE--EeccCceeeeccCCCCC--eEecCCCCeEEEE
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK--DDVPAEGPKYMAV 166 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~ 166 (270)
.|+.++...+ +....+... ...++.++.........++.-.+| +.+.....+.+..+... -.++|||+++++.
T Consensus 267 ~dl~~~~~~~--Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 267 MDLDGKNLPR--LTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred EcCCCCccee--cccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEE
Confidence 5666655322 111111111 112233333222333333333443 33444433333333333 7899999988876
Q ss_pred ecCCCce--EEEEeCCCcceeeeec
Q 024245 167 AGEQLSE--VEIWDLNTAERCTRLH 189 (270)
Q Consensus 167 ~~~~d~~--i~iwd~~~~~~~~~~~ 189 (270)
+ ..+|. |.+.|+.++...+.+.
T Consensus 344 ~-~~~g~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 344 S-SSGGQWDIDKNDLASGGKIRILT 367 (425)
T ss_pred e-ccCCceeeEEeccCCCCcEEEcc
Confidence 5 33454 7777777666544444
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00013 Score=60.95 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=101.0
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
.+.+.|++++ +++++-|+-+|.|++.+... .. .+...|. . . .- +|.+++||+.||+|.|-.+-+.+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s--~-~-----~~--~Gey~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHS--S-S-----IL--EGEYVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccc--c-c-----cc--CCceEEEecCCCcEEEeeccCCc
Confidence 4567777776 66899999999999999763 33 3333343 1 1 34 88999999999999999887765
Q ss_pred cCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCC----CCeEEEEecCCCce
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE----GPKYMAVAGEQLSE 173 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~~~~~~~~~d~~ 173 (270)
... ...++. .... ++++|+ ....++ +|+..|
T Consensus 105 ~~~--~~df~r---piks--------------------------------------ial~Pd~~~~~sk~fv-~GG~ag- 139 (846)
T KOG2066|consen 105 EIT--QYDFKR---PIKS--------------------------------------IALHPDFSRQQSKQFV-SGGMAG- 139 (846)
T ss_pred cce--eEecCC---ccee--------------------------------------EEeccchhhhhhhhee-ecCcce-
Confidence 322 111111 1111 234444 122333 576666
Q ss_pred EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCC
Q 024245 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (270)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 253 (270)
+.++.-+=-....... .| ...+.+.++. |.-+ ++|=++.+ -|+|||+.+ ++.+..++....
T Consensus 140 lvL~er~wlgnk~~v~--------l~--~~eG~I~~i~-W~g~------lIAWand~-Gv~vyd~~~-~~~l~~i~~p~~ 200 (846)
T KOG2066|consen 140 LVLSERNWLGNKDSVV--------LS--EGEGPIHSIK-WRGN------LIAWANDD-GVKVYDTPT-RQRLTNIPPPSQ 200 (846)
T ss_pred EEEehhhhhcCcccee--------ee--cCccceEEEE-ecCc------EEEEecCC-CcEEEeccc-cceeeccCCCCC
Confidence 7777643211111111 22 2467888988 9742 66666555 589999998 665555543322
Q ss_pred C------eeEEEeecCCCc
Q 024245 254 P------GLECSMWRNPIT 266 (270)
Q Consensus 254 ~------v~~~~~s~~g~~ 266 (270)
. ...+.|.++..+
T Consensus 201 ~~R~e~fpphl~W~~~~~L 219 (846)
T KOG2066|consen 201 SVRPELFPPHLHWQDEDRL 219 (846)
T ss_pred CCCcccCCCceEecCCCeE
Confidence 2 235666665544
No 326
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.91 E-value=5.1e-05 Score=38.06 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=31.9
Q ss_pred ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
++...+..|. ..|.++.|.+ ++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~--~~i~~~~~~~--~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHT--GPVTSVAFSP--DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecC--CceeEEEECC--CCCEEEEecCCCeEEEcC
Confidence 4556666676 5699999999 778999999999999996
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.0011 Score=52.98 Aligned_cols=225 Identities=13% Similarity=0.163 Sum_probs=104.4
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeec------CCCcceEEEEEeeC---CCC---C
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH------SAAHGIVSVATGPS---IGL---N 77 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~---~ 77 (270)
|+..++..++.|++++.|.-| ++|.|..+|.+.|.|++....+..-... .....|+++.|.-. .|+ -
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 445555668999999998666 9999999999999999876666542211 12256888988731 122 3
Q ss_pred EEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccCCCCCeE
Q 024245 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSLCDSKDD 155 (270)
Q Consensus 78 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (270)
.++.|...|.+.+|.+.-.... .+. ....... ....+....+ ++..+++........-..+.
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g---~f~-----v~~~~~~--------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~ 220 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNG---RFS-----VQFAGAT--------TNHDSPILSIIPINADTGESALATISAMQGLS 220 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG----EE-----EEEEEEE----------SS----EEEEEETTT--B-B-BHHHHHGGG
T ss_pred EEEEEeCCCCEEEEEEecCCCC---ceE-----EEEeecc--------ccCCCceEEEEEEECCCCCcccCchhHhhccc
Confidence 6788999999999987521100 000 0000000 0000000000 11111111000000000000
Q ss_pred ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCC-CCCceEEEEecCCCcEE
Q 024245 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-SQGFVNVLAGYEDGSIL 234 (270)
Q Consensus 156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~-~~g~~~l~~~~~dg~i~ 234 (270)
-...-+.++++++ +..++++...+.+...+... ..-.+..+. +-+.. ..+...|++-..+|.|+
T Consensus 221 ~g~~i~g~vVvvS--e~~irv~~~~~~k~~~K~~~------------~~~~~~~~~-vv~~~~~~~~~~Lv~l~~~G~i~ 285 (395)
T PF08596_consen 221 KGISIPGYVVVVS--ESDIRVFKPPKSKGAHKSFD------------DPFLCSSAS-VVPTISRNGGYCLVCLFNNGSIR 285 (395)
T ss_dssp GT----EEEEEE---SSEEEEE-TT---EEEEE-S------------S-EEEEEEE-EEEEE-EEEEEEEEEEETTSEEE
T ss_pred cCCCcCcEEEEEc--ccceEEEeCCCCcccceeec------------cccccceEE-EEeecccCCceEEEEEECCCcEE
Confidence 0001123444444 47899999998876655442 111222232 42210 01223888889999999
Q ss_pred EEEcCCCCcceeeeeccC----CCeeEEEeecCCCce
Q 024245 235 VWDIRNPGIPLTAMKVHL----EPGLECSMWRNPITM 267 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l 267 (270)
++.+.. -+.+..++-.. ..+...+++++|..+
T Consensus 286 i~SLP~-Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 286 IYSLPS-LKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp EEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred EEECCC-chHhhcccCCCccccccccccEECCCCCEE
Confidence 999998 56665555422 234567778887754
No 328
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.80 E-value=0.0028 Score=40.27 Aligned_cols=67 Identities=21% Similarity=0.329 Sum_probs=51.5
Q ss_pred EEEEEEeC-C--C-CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 21 VTDVCFHQ-T--K-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 21 v~~~~~s~-~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
|++|++.. + | ..|+.|+.|..|++|+- .+.+.++... +.|.++.-.. . ..++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~---~~v~~L~~~~--~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET---DKVTSLCSLG--G-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc---cceEEEEEcC--C-CEEEEEecCCEEEEEeCcc
Confidence 67777766 3 3 48999999999999974 3667666655 5588888776 5 7799999999999887643
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.0022 Score=53.32 Aligned_cols=77 Identities=10% Similarity=0.095 Sum_probs=59.5
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee---EEEeecC-CCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV---SSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
-.+.+..+..|++..++|.|+..|.|.++-+.++.+. ..-..+. +...|++++|++ ++..+++|...|+|.+-.
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEE
Confidence 4556777788888889999999999999988764221 1111111 126799999999 999999999999999988
Q ss_pred ccC
Q 024245 93 IEN 95 (270)
Q Consensus 93 ~~~ 95 (270)
+.+
T Consensus 153 L~s 155 (726)
T KOG3621|consen 153 LDS 155 (726)
T ss_pred ech
Confidence 877
No 330
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.79 E-value=0.009 Score=48.33 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=93.0
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccc
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY 111 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 111 (270)
.++.+..++.|..+|.++|+.+..+........+.. .-+|...+..++.++.++.+..+|..+++..............
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~ 240 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT 240 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence 444556667777777777776665543211000000 0111111245666777888888888888654311000000000
Q ss_pred eE-----EEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245 112 HF-----CKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185 (270)
Q Consensus 112 ~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 185 (270)
.. ...++....... .....+....+|..+++.+=....+.. ......+..+++ ++.+|.+..+|..+++.+
T Consensus 241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~~vy~--~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAVDGGRIYL--VDQNDRVYALDTRGGVEL 317 (394)
T ss_pred chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEEECCEEEE--EcCCCeEEEEECCCCcEE
Confidence 00 000000000111 111223334445555543211111110 111223455654 335799999999999876
Q ss_pred eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
.+.... .+ ....+.. .. ++ +|+.++.||.|++.|..+ ++.+...+.
T Consensus 318 W~~~~~------~~-----~~~~sp~-v~----~g--~l~v~~~~G~l~~ld~~t-G~~~~~~~~ 363 (394)
T PRK11138 318 WSQSDL------LH-----RLLTAPV-LY----NG--YLVVGDSEGYLHWINRED-GRFVAQQKV 363 (394)
T ss_pred Eccccc------CC-----CcccCCE-EE----CC--EEEEEeCCCEEEEEECCC-CCEEEEEEc
Confidence 554310 01 0111111 21 33 688889999999999998 787776654
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.77 E-value=0.0038 Score=50.75 Aligned_cols=172 Identities=15% Similarity=0.124 Sum_probs=88.2
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
.++.+....-....++++|+|++++.+ .||...|+.....+... .+. -....|.+ . +.+++-...++|.
T Consensus 24 ~~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--~G~-----g~~~vw~~--~-n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 24 SVKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--FGS-----GLSFVWSS--R-NRYAVLESSSTIK 92 (443)
T ss_dssp --EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--EEE------SEEEE-T--S-SEEEEE-TTS-EE
T ss_pred EeccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--cCc-----eeEEEEec--C-ccEEEEECCCeEE
Confidence 334444455567899999999998885 47888888844333332 222 35678887 5 5577777788899
Q ss_pred EE-EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245 90 CW-DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (270)
Q Consensus 90 ~w-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 168 (270)
++ +++... .+ .+.... ....+ |. |. +++..+
T Consensus 93 I~kn~~~~~-~k----~i~~~~-~~~~I---------------------------------------f~--G~-LL~~~~ 124 (443)
T PF04053_consen 93 IYKNFKNEV-VK----SIKLPF-SVEKI---------------------------------------FG--GN-LLGVKS 124 (443)
T ss_dssp EEETTEE-T-T---------SS--EEEE---------------------------------------E---SS-SEEEEE
T ss_pred EEEcCcccc-ce----EEcCCc-ccceE---------------------------------------Ec--Cc-EEEEEC
Confidence 96 333221 11 111110 00000 22 44 344344
Q ss_pred CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC------
Q 024245 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG------ 242 (270)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~------ 242 (270)
++.|.+||..+++.+.++.. . .+..+. |+++ |. +++..+.+ .+++++... .
T Consensus 125 --~~~i~~yDw~~~~~i~~i~v-------------~-~vk~V~-Ws~~---g~-~val~t~~-~i~il~~~~-~~~~~~~ 181 (443)
T PF04053_consen 125 --SDFICFYDWETGKLIRRIDV-------------S-AVKYVI-WSDD---GE-LVALVTKD-SIYILKYNL-EAVAAIP 181 (443)
T ss_dssp --TTEEEEE-TTT--EEEEESS---------------E-EEEE-E-TT---SS-EEEEE-S--SEEEEEE-H-HHHHHBT
T ss_pred --CCCEEEEEhhHcceeeEEec-------------C-CCcEEE-EECC---CC-EEEEEeCC-eEEEEEecc-hhccccc
Confidence 35899999999999999982 2 256666 9985 44 67777644 777777553 1
Q ss_pred -----cceeeeeccCCCeeEEEeecC
Q 024245 243 -----IPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 243 -----~~~~~~~~~~~~v~~~~~s~~ 263 (270)
..+..+..-...|.+.+|..|
T Consensus 182 ~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 182 EEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp TTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred ccCchhceEEEEEecceeEEEEEEcC
Confidence 133444333567888888766
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00018 Score=55.51 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=63.0
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
++|||..+.++. .++.+..|+|.|+++...+..+. .+ ..+++++ |.-++ +.+|.+|-..|.|
T Consensus 199 lafSp~~~GLl~-~asl~nkiki~dlet~~~vssy~--------a~-----~~~wSC~-wDlde---~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 199 LAFSPFNEGLLG-LASLGNKIKIMDLETSCVVSSYI--------AY-----NQIWSCC-WDLDE---RHVIYAGLQNGMV 260 (463)
T ss_pred hccCccccceee-eeccCceEEEEecccceeeehee--------cc-----CCceeee-eccCC---cceeEEeccCceE
Confidence 889999876554 56778999999999999888887 33 4677877 88753 3499999999999
Q ss_pred EEEEcCCCCcceeeeec
Q 024245 234 LVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~~~ 250 (270)
.+||++.+..++..+.+
T Consensus 261 lvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVA 277 (463)
T ss_pred EEEEccCCCchHhhhhh
Confidence 99999987666665544
No 333
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.73 E-value=0.00015 Score=38.48 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=29.9
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT 52 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 52 (270)
...|.+++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 4543
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.70 E-value=0.013 Score=51.94 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=24.1
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEe
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWD 46 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 46 (270)
...|.+++||||++.++..+.++++.+-+
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 56899999999999998888877776643
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.67 E-value=0.0043 Score=50.16 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=45.7
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEE-EEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 100 (270)
+..++.++.+|.+..+|.++|+.+....... .+.+ ... .+..++.+..++.+.-+|.++++...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE----ECCEEEEECCCCEEEEEEccCCCEee
Confidence 3466777889999999999999887765442 2222 122 22567778888999999999987654
No 336
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.025 Score=45.93 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=47.7
Q ss_pred EEEeCCCCEEEEecCC----------C-cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 24 VCFHQTKPILFAGTTG----------G-ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 24 ~~~s~~~~~l~s~~~d----------g-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
++.+|.|..+|....+ . .|.||+.. |+.+..+.-.. +.|.++.|+. + ..|+....||.+++||
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~--~~iv~~~wt~--~-e~LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS--GRIVGMGWTD--D-EELVVVQSDGTVRVYD 107 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC--CCEEEEEECC--C-CeEEEEEcCCEEEEEe
Confidence 4555655555555333 1 48888865 67777766555 5699999988 6 6677788999999999
Q ss_pred ccCC
Q 024245 93 IENG 96 (270)
Q Consensus 93 ~~~~ 96 (270)
+...
T Consensus 108 ~~G~ 111 (410)
T PF04841_consen 108 LFGE 111 (410)
T ss_pred CCCc
Confidence 8643
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.58 E-value=0.021 Score=44.17 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=104.9
Q ss_pred EEEEeCCCCEEEEe--cCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC-CccC
Q 024245 23 DVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGLS 99 (270)
Q Consensus 23 ~~~~s~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~ 99 (270)
.++++.||++++.. +-.-+|.|-|+..++.+.++.... +..+ .|..+ ..+.+.+.||.+....+.. |+..
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~i--yP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLI--YPSGN-RGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEE--EEEET-TEEEEEETTSCEEEEEETSTSSEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEE--EecCC-CceEEEecCCceEEEEECCCCCEe
Confidence 35788889877653 445679999999988888876543 3333 34213 5688999999999998874 3321
Q ss_pred CCCccceecccc-eEEEEee-ccCCccceecCCCCceEEEeccCce---------------eeeccCCCCCeEecCCCCe
Q 024245 100 SNPSLTIKTNSY-HFCKLSL-VKEPYANAKQANEPKDCYEREVGET---------------VDTDSLCDSKDDVPAEGPK 162 (270)
Q Consensus 100 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~~~~ 162 (270)
......+..... .+..-.. .......+....+.+...++..... ..+...|-+.+++++...+
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 100000000000 0000000 0000011111122222222222210 1112222333788776665
Q ss_pred EEEEe--c----CCC--ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE-EecCCCcE
Q 024245 163 YMAVA--G----EQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL-AGYEDGSI 233 (270)
Q Consensus 163 ~~~~~--~----~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~-~~~~dg~i 233 (270)
+++.- | .+| ..|-++|+.+++.+.++.. ...+.++. .+-+ +.. +|+ ....++.+
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-------------~~~~~Si~-Vsqd--~~P-~L~~~~~~~~~l 314 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-------------EHPIDSIA-VSQD--DKP-LLYALSAGDGTL 314 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-------------EEEESEEE-EESS--SS--EEEEEETTTTEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-------------CCccceEE-EccC--CCc-EEEEEcCCCCeE
Confidence 55432 1 112 2477779999999999984 23455666 6553 333 554 45578999
Q ss_pred EEEEcCCCCcceeeeecc
Q 024245 234 LVWDIRNPGIPLTAMKVH 251 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~~~~ 251 (270)
.+||..+ ++.+.+++.-
T Consensus 315 ~v~D~~t-Gk~~~~~~~l 331 (342)
T PF06433_consen 315 DVYDAAT-GKLVRSIEQL 331 (342)
T ss_dssp EEEETTT---EEEEE---
T ss_pred EEEeCcC-CcEEeehhcc
Confidence 9999999 8888888753
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.55 E-value=0.0076 Score=38.33 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=24.3
Q ss_pred eEEEEEeeCCC--CCEEEEEeCCCcEEEEEccC
Q 024245 65 IVSVATGPSIG--LNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 65 v~~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~ 95 (270)
|.+|++..... .+.|+.|+.|..|++|+-+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e 34 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE 34 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc
Confidence 77888877533 26899999999999998653
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.55 E-value=0.0022 Score=53.42 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=26.9
Q ss_pred CCcEEEEEcCC----CCcceeeeeccCCCeeEEEeecCCCce
Q 024245 230 DGSILVWDIRN----PGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 230 dg~i~vwd~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
++.|.+.|.++ ..+.+..+.. ...+..+++||||+++
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkyl 335 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYF 335 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEE
Confidence 46788899886 2345555553 4568999999999986
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.49 E-value=0.018 Score=45.85 Aligned_cols=222 Identities=10% Similarity=0.005 Sum_probs=106.0
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC---------------CcceEEEEEeeCCCCCEEEEE
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---------------AHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~s~ 82 (270)
...+....|||+|+.+|... ++.|.+++..++...+.-..... -+.-.++-|+| ++++|+..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TSSEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--CCCEEEEE
Confidence 56788899999999988875 57899999887754432211100 01235788999 99998865
Q ss_pred eC-CCcEEEEEccCCccCCC--C-ccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC----CCCC-
Q 024245 83 GR-DGTVKCWDIENGGLSSN--P-SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL----CDSK- 153 (270)
Q Consensus 83 ~~-d~~i~~wd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 153 (270)
.. +..|+.+.+........ | ...++ ....+... ......++++..++....... ....
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~--------YPk~G~~n-----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~y 185 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIR--------YPKAGDPN-----PRVSLFVVDLASGKTTELDPPNSLNPQDYY 185 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE----------BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccc--------cCCCCCcC-----CceEEEEEECCCCcEEEeeeccccCCCccC
Confidence 43 44555554432111000 0 00000 00000000 111123345544443221111 1111
Q ss_pred ---eEecCCCCeEEEEecCCC---ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecC-CCCCCCceEEEE
Q 024245 154 ---DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-PSKSQGFVNVLA 226 (270)
Q Consensus 154 ---~~~s~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-p~~~~g~~~l~~ 226 (270)
+.|++++..+++...+.+ ..+.+.|..++.....+.. ....... ...... |. ++ ++. +|..
T Consensus 186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-------~~~~Wv~-~~~~~~-~~~~~--~~~-~l~~ 253 (353)
T PF00930_consen 186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-------TSDGWVD-VYDPPH-FLGPD--GNE-FLWI 253 (353)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-------ESSSSSS-SSSEEE-E-TTT--SSE-EEEE
T ss_pred cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-------cCCccee-eecccc-cccCC--CCE-EEEE
Confidence 789999885555444333 3466678877665433332 0111111 111222 43 43 333 6666
Q ss_pred ecCCCcEEEEEcCCCCcceeeeeccCCCeeE-EEeecCCCce
Q 024245 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGLE-CSMWRNPITM 267 (270)
Q Consensus 227 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l 267 (270)
...||--+||-+...+.....+....-.|+. +.|++++..|
T Consensus 254 s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~i 295 (353)
T PF00930_consen 254 SERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRI 295 (353)
T ss_dssp EETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEE
T ss_pred EEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEE
Confidence 6688865555444434444455544556654 6777776643
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.039 Score=44.41 Aligned_cols=185 Identities=13% Similarity=0.069 Sum_probs=111.7
Q ss_pred cEEEEEEeCCCCEEEEecC---CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEEEEEccC
Q 024245 20 SVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN 95 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~ 95 (270)
....++++++++.++.+.. ++.+.+.|..+.+.+....... .+ ..+++.| +|+.++... .++.|.+.|...
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--Cc-ceEEECC--CCCeEEEEecCCCeEEEEeCCC
Confidence 4467889998887666554 6889999998888888755443 34 8999999 988766554 788999999665
Q ss_pred CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCC-CceE
Q 024245 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ-LSEV 174 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-d~~i 174 (270)
....+ ....... .....+..+.++|+|.+++++.... ++.+
T Consensus 192 ~~v~~------~~~~~~~--------------------------------~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 192 NSVVR------GSVGSLV--------------------------------GVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred cceec------ccccccc--------------------------------ccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 54321 0000000 0111111166889999777644332 2689
Q ss_pred EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC--
Q 024245 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-- 252 (270)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-- 252 (270)
...|..++.....-.. .- .. ....+. ..|+ |....+.-+..+.+.+-|..+ ...........
T Consensus 234 ~~id~~~~~v~~~~~~-------~~---~~-~~~~v~-~~p~---g~~~yv~~~~~~~V~vid~~~-~~v~~~~~~~~~~ 297 (381)
T COG3391 234 LKIDTATGNVTATDLP-------VG---SG-APRGVA-VDPA---GKAAYVANSQGGTVSVIDGAT-DRVVKTGPTGNEA 297 (381)
T ss_pred EEEeCCCceEEEeccc-------cc---cC-CCCcee-ECCC---CCEEEEEecCCCeEEEEeCCC-Cceeeeecccccc
Confidence 9999988776655221 00 11 233344 7774 442333335568899999887 55555443322
Q ss_pred -CCeeEEEeecC
Q 024245 253 -EPGLECSMWRN 263 (270)
Q Consensus 253 -~~v~~~~~s~~ 263 (270)
..+..+++.+.
T Consensus 298 ~~~~~~~~~~~~ 309 (381)
T COG3391 298 LGEPVSIAISPL 309 (381)
T ss_pred cccceeccceee
Confidence 23455555543
No 342
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0012 Score=51.93 Aligned_cols=173 Identities=8% Similarity=-0.018 Sum_probs=98.5
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCC---EEE-EEe
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN---KVI-SQG 83 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~-s~~ 83 (270)
+.+..++.|-..|.+++.+-++.++.|.+. |..++++|+++-..+.-++...- --.+.|... .|. .|+ +.-
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l---Pg~a~wv~s-kGd~~s~IAVs~~ 119 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL---PGFAEWVTS-KGDKISLIAVSLF 119 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC---CCceEEecC-CCCeeeeEEeecc
Confidence 356677788899999999999999999777 99999999987655533332221 122333321 221 333 344
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEecc-Cce----eee----------c
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREV-GET----VDT----------D 147 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~----~~~----------~ 147 (270)
.++.+.++|-....+..-....++..+. ..+.......... ...++-+..|..+. .+. +.. .
T Consensus 120 ~sg~i~VvD~~~d~~q~~~fkklH~sPV--~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 120 KSGKIFVVDGFGDFCQDGYFKKLHFSPV--KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred cCCCcEEECCcCCcCccceecccccCce--EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcc
Confidence 6788999998766543211112222222 2222222222222 22234445555442 111 110 1
Q ss_pred cCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245 148 SLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 148 ~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 189 (270)
...... +.|+|+|..+- +-+.|..|++++..+++.++.+.
T Consensus 198 ~K~Kt~pts~Efsp~g~qis--tl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 198 PKAKTEPTSFEFSPDGAQIS--TLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccccCccceEEccccCccc--ccCcccEEEEEEeccchhhhhhh
Confidence 111111 89999997653 34469999999999998777665
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.041 Score=44.29 Aligned_cols=184 Identities=15% Similarity=0.083 Sum_probs=109.8
Q ss_pred EEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEEccCCc
Q 024245 22 TDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGG 97 (270)
Q Consensus 22 ~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~ 97 (270)
..++.++.+. ..+....+..|.+.|....+......... ....++++| +++.+..+.. ++++.+.|..+++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~---~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL---GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc---CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCe
Confidence 4677788777 44445556889999988777776665443 357899999 8777765554 6778888877765
Q ss_pred cCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEE
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iw 177 (270)
... ........ ..++++|+|..++++. ..++.|.+.
T Consensus 152 ~~~----~~~vG~~P---------------------------------------~~~a~~p~g~~vyv~~-~~~~~v~vi 187 (381)
T COG3391 152 VTA----TIPVGNTP---------------------------------------TGVAVDPDGNKVYVTN-SDDNTVSVI 187 (381)
T ss_pred EEE----EEecCCCc---------------------------------------ceEEECCCCCeEEEEe-cCCCeEEEE
Confidence 433 11111100 0166899999887754 558999999
Q ss_pred eCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC--CcEEEEEcCCCCcceee-eeccCCC
Q 024245 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--GSILVWDIRNPGIPLTA-MKVHLEP 254 (270)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d--g~i~vwd~~~~~~~~~~-~~~~~~~ 254 (270)
|........ -.. +-..........+. +.|+ |....++...+ +.+...|..+ +..... ...-...
T Consensus 188 ~~~~~~v~~-~~~-------~~~~~~~~~P~~i~-v~~~---g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~ 254 (381)
T COG3391 188 DTSGNSVVR-GSV-------GSLVGVGTGPAGIA-VDPD---GNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGA 254 (381)
T ss_pred eCCCcceec-ccc-------ccccccCCCCceEE-ECCC---CCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCC
Confidence 977655443 110 00000111223344 7774 44233333333 6899999887 444443 2221114
Q ss_pred eeEEEeecCCCce
Q 024245 255 GLECSMWRNPITM 267 (270)
Q Consensus 255 v~~~~~s~~g~~l 267 (270)
...+.++|+|.++
T Consensus 255 ~~~v~~~p~g~~~ 267 (381)
T COG3391 255 PRGVAVDPAGKAA 267 (381)
T ss_pred CCceeECCCCCEE
Confidence 5668888888764
No 344
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.38 E-value=0.049 Score=43.59 Aligned_cols=219 Identities=11% Similarity=0.022 Sum_probs=90.5
Q ss_pred CCCCCCccccccc---cc----ccEEEEEEeCCCCEEEEec------CCCcEEEEeCCCCceeEEEeecCC-CcceEEEE
Q 024245 4 RPPPPDPVAVLRG---HR----ASVTDVCFHQTKPILFAGT------TGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVA 69 (270)
Q Consensus 4 ~~~~~~~~~~~~~---h~----~~v~~~~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~ 69 (270)
.|..|+..++++. +. ..-..+-.-|+|++++|+- .-|-+.+.|-++.+.......... ..--+.+-
T Consensus 108 dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw 187 (461)
T PF05694_consen 108 DPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFW 187 (461)
T ss_dssp -TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EE
T ss_pred CCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeE
Confidence 3555666666664 22 1122333346898888852 234688888887776666544221 13356777
Q ss_pred EeeCCCCCEEEEEeC--------------------CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC
Q 024245 70 TGPSIGLNKVISQGR--------------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129 (270)
Q Consensus 70 ~~~~~~~~~l~s~~~--------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (270)
|.| ..+.++|... ..++.+||+.+.+..+ ++.-.......+.+.+
T Consensus 188 ~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q----~idLg~~g~~pLEvRf--------- 252 (461)
T PF05694_consen 188 YQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ----TIDLGEEGQMPLEVRF--------- 252 (461)
T ss_dssp EET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE----EEES-TTEEEEEEEEE---------
T ss_pred EcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee----EEecCCCCCceEEEEe---------
Confidence 888 6677887643 2478888888876544 3332222222222221
Q ss_pred CCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeC-CCcc----eeeeeccCc-----CCCCCCc
Q 024245 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL-NTAE----RCTRLHQNS-----CGGSPNF 199 (270)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~-~~~~----~~~~~~~~~-----~~~~~~h 199 (270)
...|+..+-++.+.- .++|..|-- ..++ .+..+..+. +.....-
T Consensus 253 -------------------------lH~P~~~~gFvg~aL-ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~ 306 (461)
T PF05694_consen 253 -------------------------LHDPDANYGFVGCAL-SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKP 306 (461)
T ss_dssp --------------------------SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred -------------------------cCCCCccceEEEEec-cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccc
Confidence 122334444433332 244444432 3332 122222100 0000000
Q ss_pred ccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc------------------CCCeeEEEee
Q 024245 200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH------------------LEPGLECSMW 261 (270)
Q Consensus 200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------------~~~v~~~~~s 261 (270)
.......++.+. .|. |.+++.+++=.+|.|+.||+..+..+...-+.. .+...-+..|
T Consensus 307 ~~~~P~LitDI~-iSl---DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS 382 (461)
T PF05694_consen 307 FGAVPPLITDIL-ISL---DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLS 382 (461)
T ss_dssp G-EE------EE-E-T---TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-
T ss_pred cccCCCceEeEE-Ecc---CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEc
Confidence 000134566776 776 456577788899999999999877665443211 1233567888
Q ss_pred cCCCce
Q 024245 262 RNPITM 267 (270)
Q Consensus 262 ~~g~~l 267 (270)
.||+.|
T Consensus 383 ~DGkRl 388 (461)
T PF05694_consen 383 LDGKRL 388 (461)
T ss_dssp TTSSEE
T ss_pred cCCeEE
Confidence 888764
No 345
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.35 E-value=0.031 Score=43.28 Aligned_cols=144 Identities=16% Similarity=0.165 Sum_probs=90.5
Q ss_pred CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEEEEEccCCccCCCCccceecc
Q 024245 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGGLSSNPSLTIKTN 109 (270)
Q Consensus 40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~~~ 109 (270)
+.+.|+|..+++.+..+...- .-.+..+| +++.+++++ ....|.+||..+-.... .+.-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~----~~~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~----EI~iP 86 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF----LGNVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG----EIEIP 86 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES----SEEEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE----EEEET
T ss_pred ceEEEEECCCCcEEEEeeccc----CCceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccc----eEecC
Confidence 479999999998887776543 34466788 888887643 24478899988764322 11111
Q ss_pred cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeee
Q 024245 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (270)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 188 (270)
..... ....+.. ..++.||+++++.--+--.+|.|-|+..++.+.++
T Consensus 87 ~k~R~--------------------------------~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei 134 (342)
T PF06433_consen 87 PKPRA--------------------------------QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI 134 (342)
T ss_dssp TS-B----------------------------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred Ccchh--------------------------------eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee
Confidence 10000 0000111 66899999988876666789999999999998888
Q ss_pred ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
.. .+ |+. ..|.++ + -+.+-+.||.+.-..+...+++.
T Consensus 135 ~~-------------PG-C~~---iyP~~~--~-~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 135 DT-------------PG-CWL---IYPSGN--R-GFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp EG-------------TS-EEE---EEEEET--T-EEEEEETTSCEEEEEETSTSSEE
T ss_pred cC-------------CC-EEE---EEecCC--C-ceEEEecCCceEEEEECCCCCEe
Confidence 73 22 222 224322 2 46677789998888888656654
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.33 E-value=0.0039 Score=53.87 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=69.3
Q ss_pred ceEEEeccCceeeeccCCCCC--eEecCC--------CCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCccc
Q 024245 133 KDCYEREVGETVDTDSLCDSK--DDVPAE--------GPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSS 201 (270)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~--~~~s~~--------~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~ 201 (270)
....|++.++.+..--..... ..+.|+ .+.++ |-.+..+..||.|-.. .+..-. .|.-
T Consensus 506 ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~--------~k~Y 574 (794)
T PF08553_consen 506 LYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQ--------SKQY 574 (794)
T ss_pred eEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEE---EECCCceEEeccCCCCCceeecc--------cccc
Confidence 344566666665432222212 344443 22333 4457889999999643 111111 2211
Q ss_pred CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 202 ~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.......+++ -.. +| +||.|+.+|.||+||--. .+....+++-..+|.+|..+.||++|-
T Consensus 575 ~~~~~Fs~~a-Tt~---~G--~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 575 SSKNNFSCFA-TTE---DG--YIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred ccCCCceEEE-ecC---Cc--eEEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEecCCCcEEE
Confidence 1112222322 222 45 899999999999999432 455556677789999999999999874
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.003 Score=52.49 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=56.2
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
|...|.--++...+++++.|+.-|.+++|+-..++... ++.......+..+..++ +..+++.|+..|.|.++-+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhcc
Confidence 44556666677788999999999999999977655443 33211224466777888 7677888899999999988773
No 348
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.24 E-value=0.049 Score=40.67 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=50.5
Q ss_pred EEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCC-cceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 24 VCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 24 ~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
++.+.+|++||.- .|..|.|-..+.. ..+...+....+ -.=..++|+| |+.+|+.+...|+|++||+....
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEecccce
Confidence 5677899888765 4667888776653 233333322211 2257899999 99999999999999999998654
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.20 E-value=0.089 Score=42.93 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=45.6
Q ss_pred cEEEEEEeCCCCEEEEe-cCC----CcEEEEeCCCCceeEEE-eecCCCcceEEEEEeeCCCCCEEEEEeCCC-------
Q 024245 20 SVTDVCFHQTKPILFAG-TTG----GELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDG------- 86 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~-~~d----g~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~------- 86 (270)
.+....++|+|+++|-+ +.. ..|++.|+++++.+... .... -..+.|.+ +++.|+-...+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~----~~~~~W~~--d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK----FSSVSWSD--DGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE----SEEEEECT--TSSEEEEEECSTTTSS-CC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc----cceEEEeC--CCCEEEEEEeCcccccccC
Confidence 44567899999987754 333 45999999999776532 2221 23499999 877766444332
Q ss_pred ----cEEEEEccCCc
Q 024245 87 ----TVKCWDIENGG 97 (270)
Q Consensus 87 ----~i~~wd~~~~~ 97 (270)
.|..|++.+..
T Consensus 199 ~~~~~v~~~~~gt~~ 213 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQ 213 (414)
T ss_dssp GCCEEEEEEETTS-G
T ss_pred CCCcEEEEEECCCCh
Confidence 25666665543
No 350
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0025 Score=52.31 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=63.0
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
+.|+|.-. ++| .+..+|.|-+..+. .+.+.++. -+.. ....+++ |.|+ |. +||.|-.||+|
T Consensus 26 ~ewnP~~d-LiA-~~t~~gelli~R~n-~qRlwtip--------~p~~---~v~~sL~-W~~D---Gk-llaVg~kdG~I 86 (665)
T KOG4640|consen 26 IEWNPKMD-LIA-TRTEKGELLIHRLN-WQRLWTIP--------IPGE---NVTASLC-WRPD---GK-LLAVGFKDGTI 86 (665)
T ss_pred EEEcCccc-hhh-eeccCCcEEEEEec-cceeEecc--------CCCC---ccceeee-ecCC---CC-EEEEEecCCeE
Confidence 66888876 333 56668999999888 67777777 2222 1224676 9995 55 99999999999
Q ss_pred EEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245 234 LVWDIRNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
++.|+.+++............|.++-|++
T Consensus 87 ~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 87 RLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEEccCCCceeccccccccchheeeccc
Confidence 99999994443333333456788888864
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.022 Score=46.28 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=57.3
Q ss_pred cCCCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 168 GEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
|-.|..|.-||+|-... +...+ +|.-.....-. ||.-.+ +| ++++||.+|.|++||--. ....
T Consensus 400 GLs~n~vfriDpRv~~~~kl~~~q--------~kqy~~k~nFs---c~aTT~-sG--~IvvgS~~GdIRLYdri~-~~AK 464 (644)
T KOG2395|consen 400 GLSDNSVFRIDPRVQGKNKLAVVQ--------SKQYSTKNNFS---CFATTE-SG--YIVVGSLKGDIRLYDRIG-RRAK 464 (644)
T ss_pred eecCCceEEecccccCcceeeeee--------ccccccccccc---eeeecC-Cc--eEEEeecCCcEEeehhhh-hhhh
Confidence 44578899999984332 22222 33221111111 233332 35 899999999999999733 5566
Q ss_pred eeeeccCCCeeEEEeecCCCcee
Q 024245 246 TAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 246 ~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
..+++...+|..|..+.||+.|-
T Consensus 465 TAlPgLG~~I~hVdvtadGKwil 487 (644)
T KOG2395|consen 465 TALPGLGDAIKHVDVTADGKWIL 487 (644)
T ss_pred hcccccCCceeeEEeeccCcEEE
Confidence 67888899999999999999874
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.14 E-value=0.038 Score=43.67 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=84.2
Q ss_pred EEeCCCCEEE-EecCCC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245 25 CFHQTKPILF-AGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (270)
Q Consensus 25 ~~s~~~~~l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 101 (270)
+|.++|+.|+ ++..|| .+.+-|+.+++..+.-.+.. .......++| +++.++-......|+-.|+++.+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~--~~~~~~Yv~~~~~l~~vdL~T~e~~~- 116 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSP--DDRALYYVKNGRSLRRVDLDTLEERV- 116 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-T--TSSEEEEEETTTEEEEEETTT--EEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEec--CCCeEEEEECCCeEEEEECCcCcEEE-
Confidence 5677887554 444454 57777888887776554432 2233566677 66777655556688888888876422
Q ss_pred CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (270)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~ 181 (270)
+..++..-.....+....... .+.-++..+.-...+ .. +.-..+.+. ..-...|.-.|+.+
T Consensus 117 -vy~~p~~~~g~gt~v~n~d~t----------~~~g~e~~~~d~~~l---~~--~~~f~e~~~---a~p~~~i~~idl~t 177 (386)
T PF14583_consen 117 -VYEVPDDWKGYGTWVANSDCT----------KLVGIEISREDWKPL---TK--WKGFREFYE---ARPHCRIFTIDLKT 177 (386)
T ss_dssp -EEE--TTEEEEEEEEE-TTSS----------EEEEEEEEGGG--------S--HHHHHHHHH---C---EEEEEEETTT
T ss_pred -EEECCcccccccceeeCCCcc----------EEEEEEEeehhccCc---cc--cHHHHHHHh---hCCCceEEEEECCC
Confidence 444443333222222111100 000000000000000 00 000001111 11235567778888
Q ss_pred cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC---CCc-EEEEEcCCCCcceeeeeccC--CCe
Q 024245 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGS-ILVWDIRNPGIPLTAMKVHL--EPG 255 (270)
Q Consensus 182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~---dg~-i~vwd~~~~~~~~~~~~~~~--~~v 255 (270)
|+....+.. ...+.-+. |+|..+ . +|+-|-+ |.. -+||-+++.+.....+..+. ..+
T Consensus 178 G~~~~v~~~-------------~~wlgH~~-fsP~dp--~-li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 178 GERKVVFED-------------TDWLGHVQ-FSPTDP--T-LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV 240 (386)
T ss_dssp --EEEEEEE-------------SS-EEEEE-EETTEE--E-EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred CceeEEEec-------------CccccCcc-cCCCCC--C-EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence 887666652 33556676 999733 3 4554432 222 37787776565555554332 344
Q ss_pred eEEEeecCCCce
Q 024245 256 LECSMWRNPITM 267 (270)
Q Consensus 256 ~~~~~s~~g~~l 267 (270)
..=-|.|||..|
T Consensus 241 gHEfw~~DG~~i 252 (386)
T PF14583_consen 241 GHEFWVPDGSTI 252 (386)
T ss_dssp EEEEE-TTSS-E
T ss_pred ccccccCCCCEE
Confidence 555688888765
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.022 Score=50.10 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=56.6
Q ss_pred CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (270)
Q Consensus 29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 108 (270)
.+..++.|+..|.+...|+... .-.-..+.....+|.+++|+. +|..++.|-.+|.|.+||+..++..+ .+...+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k~l~--~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAKILK--VITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCccee--eeeecC
Confidence 4557888999999999887653 111122222237899999999 99999999999999999999987655 344444
Q ss_pred ccc
Q 024245 109 NSY 111 (270)
Q Consensus 109 ~~~ 111 (270)
.+.
T Consensus 173 ap~ 175 (1206)
T KOG2079|consen 173 APV 175 (1206)
T ss_pred Ccc
Confidence 443
No 354
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.07 Score=40.08 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=43.2
Q ss_pred EEeCCCCEEEEecC-----CCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 25 CFHQTKPILFAGTT-----GGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 25 ~~s~~~~~l~s~~~-----dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
.|||||++|+..-. -|.|-|||...+ +.+.++..|. -.-..+.|.+ ||..++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G--iGpHev~lm~--DGrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG--IGPHEVTLMA--DGRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC--cCcceeEEec--CCcEEEEeCC
Confidence 58999999887543 378999998754 5677787777 4478899999 9998886643
No 355
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.11 Score=44.86 Aligned_cols=174 Identities=13% Similarity=0.121 Sum_probs=95.3
Q ss_pred Cccccccccccc-EEEEEEeCCCCEEEEecCCCc-----EEEEeCCCC------cee---EEEe--ecCCCcceEEEEEe
Q 024245 9 DPVAVLRGHRAS-VTDVCFHQTKPILFAGTTGGE-----LRIWDTVQH------RTV---SSSW--VHSAAHGIVSVATG 71 (270)
Q Consensus 9 ~~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~dg~-----i~vwd~~~~------~~~---~~~~--~~~~~~~v~~~~~~ 71 (270)
+.++-++.+... |..+-...+..+|++-+.|+. |+||+++.- .++ +.+. ....+.++.+++.+
T Consensus 55 ~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs 134 (933)
T KOG2114|consen 55 QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS 134 (933)
T ss_pred eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE
Confidence 344566777666 444433334468888777754 899999642 233 1121 12223678999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcc--CCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeec-
Q 024245 72 PSIGLNKVISQGRDGTVKCWDIE--NGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTD- 147 (270)
Q Consensus 72 ~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 147 (270)
. +-+.+|.|-.+|.|..+.-+ ..+-.+ ..........+..+........ .++++...+..+.+.... +...
T Consensus 135 ~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr--~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ 209 (933)
T KOG2114|consen 135 E--DLKTIVCGFTNGLVICYKGDILRDRGSR--QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKV 209 (933)
T ss_pred c--cccEEEEEecCcEEEEEcCcchhccccc--eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceee
Confidence 8 77889999999999888432 111111 1111112222222333222222 455556666777776333 3322
Q ss_pred cCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245 148 SLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (270)
Q Consensus 148 ~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 190 (270)
+..+.. ..+++....+++ ++ +..+.+||.....+...+..
T Consensus 210 ld~~G~~lnCss~~~~t~qfIc-a~--~e~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 210 LDNNGISLNCSSFSDGTYQFIC-AG--SEFLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred eccCCccceeeecCCCCccEEE-ec--CceEEEEcCCCcceeeeecC
Confidence 333333 333333332443 44 36899999987666666663
No 356
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0032 Score=54.96 Aligned_cols=73 Identities=22% Similarity=0.432 Sum_probs=55.8
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC-CCCEEEEEeCCCcEEEEEcc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d~~i~~wd~~ 94 (270)
.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..+. .+..++-+.-.. ++..++++...|. +|.+.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~--ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG--APVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC--CccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 5789999999999999999999999999999999998887766 334444333221 4456778777775 66653
No 357
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.02 E-value=0.085 Score=39.49 Aligned_cols=183 Identities=11% Similarity=0.022 Sum_probs=96.8
Q ss_pred ccEEEEEEeCCCCEEEEecCCC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 19 ASVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++.......... ---..++... + ....-.=.++...+||.++-
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~--d-~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILG--D-KLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEET--T-EEEEEESSSSEEEEEETTTT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEEC--C-EEEEEEecCCeEEEEccccc
Confidence 3456888877888877777665 799999999987766554321 1223455544 3 33334456788899999876
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEE
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~i 176 (270)
+... .++-.... --+..+++.++++-|+ ..+++
T Consensus 121 ~~~~----~~~y~~EG-----------------------------------------WGLt~dg~~Li~SDGS--~~L~~ 153 (264)
T PF05096_consen 121 KKIG----TFPYPGEG-----------------------------------------WGLTSDGKRLIMSDGS--SRLYF 153 (264)
T ss_dssp EEEE----EEE-SSS-------------------------------------------EEEECSSCEEEE-SS--SEEEE
T ss_pred eEEE----EEecCCcc-----------------------------------------eEEEcCCCEEEEECCc--cceEE
Confidence 5432 22111100 0123566778775554 68999
Q ss_pred EeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec------
Q 024245 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV------ 250 (270)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------ 250 (270)
+|..+-+...++.-.. ....-..+.-+. |. +|. ..|=.=....|...|..+ ++....+..
T Consensus 154 ~dP~~f~~~~~i~V~~-------~g~pv~~LNELE-~i----~G~-IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~ 219 (264)
T PF05096_consen 154 LDPETFKEVRTIQVTD-------NGRPVSNLNELE-YI----NGK-IYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPE 219 (264)
T ss_dssp E-TTT-SEEEEEE-EE-------TTEE---EEEEE-EE----TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHH
T ss_pred ECCcccceEEEEEEEE-------CCEECCCcEeEE-EE----cCE-EEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhc
Confidence 9988777666665210 011112233333 33 232 333333344555566666 554443320
Q ss_pred ---------cCCCeeEEEeecCCCc
Q 024245 251 ---------HLEPGLECSMWRNPIT 266 (270)
Q Consensus 251 ---------~~~~v~~~~~s~~g~~ 266 (270)
..+-.+.|||.|+...
T Consensus 220 ~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 220 VGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp HTSTTST--TTS-EEEEEEETTTTE
T ss_pred ccccccccccCCeeEeEeEeCCCCE
Confidence 1245788999987654
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.02 E-value=0.055 Score=44.23 Aligned_cols=86 Identities=9% Similarity=-0.022 Sum_probs=43.5
Q ss_pred EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (270)
Q Consensus 155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~ 234 (270)
+|.+.+++.+ -- ..++|.|+.--+.+....++. ...+-.+ |. |. +|...+. +.|.
T Consensus 75 vw~~~n~yAv--~~-~~~~I~I~kn~~~~~~k~i~~-------------~~~~~~I--f~-----G~-LL~~~~~-~~i~ 129 (443)
T PF04053_consen 75 VWSSRNRYAV--LE-SSSTIKIYKNFKNEVVKSIKL-------------PFSVEKI--FG-----GN-LLGVKSS-DFIC 129 (443)
T ss_dssp EE-TSSEEEE--E--TTS-EEEEETTEE-TT------------------SS-EEEE--E------SS-SEEEEET-TEEE
T ss_pred EEecCccEEE--EE-CCCeEEEEEcCccccceEEcC-------------CcccceE--Ec-----Cc-EEEEECC-CCEE
Confidence 4777555332 22 257899974333444444542 1123333 33 43 4555443 4899
Q ss_pred EEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 235 VWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+||..+ ++.+..+... +|..+.|+++|.++.
T Consensus 130 ~yDw~~-~~~i~~i~v~--~vk~V~Ws~~g~~va 160 (443)
T PF04053_consen 130 FYDWET-GKLIRRIDVS--AVKYVIWSDDGELVA 160 (443)
T ss_dssp EE-TTT---EEEEESS---E-EEEEE-TTSSEEE
T ss_pred EEEhhH-cceeeEEecC--CCcEEEEECCCCEEE
Confidence 999999 8888888743 489999999998864
No 359
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.98 E-value=0.0051 Score=32.61 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=27.6
Q ss_pred cceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
..|..++|+| ..++|+.++.+|.|.++.++
T Consensus 12 ~~v~~~~w~P--~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCP--TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECC--CCCEEEEEECCCeEEEEECC
Confidence 5699999999 88899999999999999994
No 360
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.97 E-value=0.097 Score=39.31 Aligned_cols=157 Identities=11% Similarity=0.095 Sum_probs=81.7
Q ss_pred EEEEEEe-CCCCEEEEecCCCcEEEEeCCCCceeEEEee--cC-CCcceEEEEEeeCCCCCEEEEEeCC--------CcE
Q 024245 21 VTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWV--HS-AAHGIVSVATGPSIGLNKVISQGRD--------GTV 88 (270)
Q Consensus 21 v~~~~~s-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~l~s~~~d--------~~i 88 (270)
...+.+. +++.+++ +...+ +.++|..+++....+.. .. .....+.+++.| +|++.++.... |.|
T Consensus 42 ~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccce
Confidence 6778888 5665544 44544 66669988865544443 11 225688999999 98877766543 345
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCC--CceEEEeccCce------eeeccCCCC----CeEe
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE--PKDCYEREVGET------VDTDSLCDS----KDDV 156 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~----~~~~ 156 (270)
..++.. ++.. ...........+.+.......+..... .+..+++..... +...+.... .+++
T Consensus 118 ~~~~~~-~~~~-----~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v 191 (246)
T PF08450_consen 118 YRIDPD-GKVT-----VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV 191 (246)
T ss_dssp EEEETT-SEEE-----EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE
T ss_pred EEECCC-CeEE-----EEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE
Confidence 555555 3321 111111112223333322223333333 333445532221 112222222 1999
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 190 (270)
..+|..+++ .- ..+.|.++|.. |+.+..+..
T Consensus 192 D~~G~l~va-~~-~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 192 DSDGNLWVA-DW-GGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp BTTS-EEEE-EE-TTTEEEEEETT-SCEEEEEE-
T ss_pred cCCCCEEEE-Ec-CCCEEEEECCC-ccEEEEEcC
Confidence 999964443 22 35899999988 888888874
No 361
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.12 Score=39.02 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=118.1
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
+.|-+..|.++.|+|+.+.|++......-.||=..+|+.++++....- .-...|++.. ++++.++--.++.+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig--~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIG--GNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEec--CCEEEEEehhcceEEEEEE
Confidence 345556699999999999888888888888887778999988764332 2356788887 7777777778889988887
Q ss_pred cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCce
Q 024245 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~ 173 (270)
....... ..... .+.+.... ..-.|-+.++|.|....++++ - +..-
T Consensus 158 d~~t~~~----~~~~~-----~i~L~~~~-----------------------k~N~GfEGlA~d~~~~~l~~a-K-Er~P 203 (316)
T COG3204 158 DADTTVI----SAKVQ-----KIPLGTTN-----------------------KKNKGFEGLAWDPVDHRLFVA-K-ERNP 203 (316)
T ss_pred cCCccEE----eccce-----EEeccccC-----------------------CCCcCceeeecCCCCceEEEE-E-ccCC
Confidence 7653211 11100 11110000 001122227899998888863 3 3455
Q ss_pred EEEEeCCCcceeeeeccCcCCCCCCcccC---CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSK---GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~---~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
+.||....+........ ...+... ....+..+. |++. .+. +|+-+.+++.+.-.|.. +.++..+.-
T Consensus 204 ~~I~~~~~~~~~l~~~~-----~~~~~~~~~~f~~DvSgl~-~~~~--~~~-LLVLS~ESr~l~Evd~~--G~~~~~lsL 272 (316)
T COG3204 204 IGIFEVTQSPSSLSVHA-----SLDPTADRDLFVLDVSGLE-FNAI--TNS-LLVLSDESRRLLEVDLS--GEVIELLSL 272 (316)
T ss_pred cEEEEEecCCccccccc-----ccCcccccceEeeccccce-ecCC--CCc-EEEEecCCceEEEEecC--CCeeeeEEe
Confidence 67766553221111110 0011111 112344555 7764 444 88888888888888877 444444432
Q ss_pred cC---------CCeeEEEeecCCC
Q 024245 251 HL---------EPGLECSMWRNPI 265 (270)
Q Consensus 251 ~~---------~~v~~~~~s~~g~ 265 (270)
+. ...-.|+..++|.
T Consensus 273 ~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 273 TKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccCCCCCcccCCCcceeEECCCCC
Confidence 21 1234667776664
No 362
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.85 E-value=0.12 Score=38.39 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=51.4
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEE-EEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 100 (270)
|.+++.|...|.+++-+.++|+....+.... .|.+ ....+ ++..+..++.|++....|.++..++.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---~vk~~a~~d~--~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---TVKVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehh---hhccceEEcC--CCceEEEecCCCcEEEecccccceEE
Confidence 5678889999999999999998887776543 2322 23345 77899999999999999998876643
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.70 E-value=0.16 Score=37.77 Aligned_cols=111 Identities=13% Similarity=0.028 Sum_probs=76.8
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 109 (270)
..+++.|+-.+.+.--|..+|+.+.+-... .+|.+-+.-- |++++.|+..|.+.+.+.+++.... .+.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~~w--~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQIW--NFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEEE---CCEEEEEEccCcEEEEEecchhhee--eeeehhh
Confidence 458888999999999999999887654333 3355544443 3789999999999999999996543 1111111
Q ss_pred cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 189 (270)
-... ....+++..+ .+|+.|++.+..|.++..++++.+
T Consensus 95 vk~~----------------------------------------a~~d~~~glI--ycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 95 VKVR----------------------------------------AQCDFDGGLI--YCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred hccc----------------------------------------eEEcCCCceE--EEecCCCcEEEecccccceEEecc
Confidence 0000 1134566533 478899999999999999998876
Q ss_pred c
Q 024245 190 Q 190 (270)
Q Consensus 190 ~ 190 (270)
.
T Consensus 133 c 133 (354)
T KOG4649|consen 133 C 133 (354)
T ss_pred c
Confidence 3
No 364
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.65 E-value=0.0034 Score=53.62 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=66.3
Q ss_pred eEecCCCCeEEEEe--cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245 154 DDVPAEGPKYMAVA--GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (270)
Q Consensus 154 ~~~s~~~~~~~~~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg 231 (270)
..|+|..+.+.+++ ....|+|.||- .+|++-.-... .-.+.+++ |+|.. ..|+.|=+-|
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-------------P~hatSLC-WHpe~----~vLa~gwe~g 81 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-------------PVHATSLC-WHPEE----FVLAQGWEMG 81 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-------------ceehhhhc-cChHH----HHHhhccccc
Confidence 45888887554432 22458888883 45665444431 12345576 99952 2888999999
Q ss_pred cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 232 SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+.+|...+ .+.-.....|..+|..+.||++|..|-
T Consensus 82 ~~~v~~~~~-~e~htv~~th~a~i~~l~wS~~G~~l~ 117 (1416)
T KOG3617|consen 82 VSDVQKTNT-TETHTVVETHPAPIQGLDWSHDGTVLM 117 (1416)
T ss_pred eeEEEecCC-ceeeeeccCCCCCceeEEecCCCCeEE
Confidence 999999887 555555567999999999999997653
No 365
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.59 E-value=0.35 Score=40.47 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=42.9
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccC----CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK----GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~----~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
.+|.+.-.|+.+|+.+.+.... .+... .......+. . .+. +|+.++.||.|+.+|.++ ++.+
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~------~~~~~~~~g~~~~~~~~~-~-----~g~-~v~~g~~dG~l~ald~~t-G~~l 429 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREG------TIRDSWNIGFPHWGGSLA-T-----AGN-LVFAGAADGYFRAFDATT-GKEL 429 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCC------ccccccccCCcccCcceE-e-----cCC-eEEEECCCCeEEEEECCC-Ccee
Confidence 3688999999999988777631 00000 000001111 1 223 788889999999999999 8877
Q ss_pred eeeec
Q 024245 246 TAMKV 250 (270)
Q Consensus 246 ~~~~~ 250 (270)
..++-
T Consensus 430 W~~~~ 434 (488)
T cd00216 430 WKFRT 434 (488)
T ss_pred eEEEC
Confidence 77764
No 366
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.56 E-value=0.29 Score=39.08 Aligned_cols=93 Identities=8% Similarity=0.085 Sum_probs=47.5
Q ss_pred CCCCeEEEEecCCCce--EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC----
Q 024245 158 AEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---- 231 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg---- 231 (270)
+++..++..+- .+|- |.+++...+. ...+.. | .-.+..+..|.+. .+. +++++..++
T Consensus 245 ~~~~~~l~~s~-~~G~~hly~~~~~~~~-~~~lT~-------G-----~~~V~~i~~~d~~--~~~-iyf~a~~~~p~~r 307 (353)
T PF00930_consen 245 PDGNEFLWISE-RDGYRHLYLYDLDGGK-PRQLTS-------G-----DWEVTSILGWDED--NNR-IYFTANGDNPGER 307 (353)
T ss_dssp TTSSEEEEEEE-TTSSEEEEEEETTSSE-EEESS--------S-----SS-EEEEEEEECT--SSE-EEEEESSGGTTSB
T ss_pred CCCCEEEEEEE-cCCCcEEEEEcccccc-eecccc-------C-----ceeecccceEcCC--CCE-EEEEecCCCCCce
Confidence 66666665444 5665 4455655444 334442 1 2233333337764 333 555555432
Q ss_pred cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 232 SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.|+.-++.. +..+..+......-..+.|||+|+++-
T Consensus 308 ~lY~v~~~~-~~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 308 HLYRVSLDS-GGEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp EEEEEETTE-TTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred EEEEEEeCC-CCCeEeccCCCCCceEEEECCCCCEEE
Confidence 455555552 344555553333335899999999874
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.069 Score=40.11 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=70.0
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC----
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---- 229 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~---- 229 (270)
++|+|.-+.-++.+---.....++|....+...++..... .| .--.= .|+| ||+ +|.+.-.
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~----RH------fyGHG-vfs~---dG~-~LYATEndfd~ 137 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG----RH------FYGHG-VFSP---DGR-LLYATENDFDP 137 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC----ce------eeccc-ccCC---CCc-EEEeecCCCCC
Confidence 8888888776665544344578899988876666542110 11 11111 2998 576 5555433
Q ss_pred -CCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 230 -DGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 230 -dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
-|.|-|||.+...+.+.++..|.-....+.|.+||+.|.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlv 177 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLV 177 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEecCCcEEE
Confidence 378999999987788889999988889999999999874
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.49 E-value=0.29 Score=38.42 Aligned_cols=180 Identities=9% Similarity=0.117 Sum_probs=98.5
Q ss_pred CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCC-----CCEEEEEeC----------CCcEEEEEccCCccCCCCcc
Q 024245 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-----LNKVISQGR----------DGTVKCWDIENGGLSSNPSL 104 (270)
Q Consensus 40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~ 104 (270)
..|++.|..+.+.+..+..... ..+.+++.....+ ..+|+.|.. .|.|.++++.........+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 3688999888888877766554 4566665544322 356775543 28899999988410000011
Q ss_pred cee--cccceEEEEeeccCCccceecCCCCceEEEeccCc-eeeeccC-CCCC-eEecCCCCeEEEEecCCCceEEEEeC
Q 024245 105 TIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSL-CDSK-DDVPAEGPKYMAVAGEQLSEVEIWDL 179 (270)
Q Consensus 105 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~ 179 (270)
.+. ........+... ......+.+....++++...+ ....... .... ++....++++++ |.....+.++..
T Consensus 81 ~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~v--gD~~~sv~~~~~ 156 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILV--GDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEE--EESSSSEEEEEE
T ss_pred EEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEE--EEcccCEEEEEE
Confidence 111 112223333322 333566667778888888777 3332222 2222 555555666654 444566777744
Q ss_pred CC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 180 NT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 180 ~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
.. ...+..+.. +.....++++. |-++ +. .++++..+|.+.++...
T Consensus 157 ~~~~~~l~~va~----------d~~~~~v~~~~-~l~d---~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVAR----------DYQPRWVTAAE-FLVD---ED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEE----------ESS-BEEEEEE-EE-S---SS-EEEEEETTSEEEEEEE-
T ss_pred EccCCEEEEEEe----------cCCCccEEEEE-EecC---Cc-EEEEEcCCCeEEEEEEC
Confidence 43 222333321 11244577776 7654 33 89999999999999876
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.48 E-value=0.16 Score=41.02 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=53.0
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeE-------------------------------------------EE
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-------------------------------------------SS 56 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-------------------------------------------~~ 56 (270)
.|+.++|+++...|+.|...|.|.||.....+... .+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999988899999999999999764321110 11
Q ss_pred eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245 57 WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 57 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
... .++|++++.+. - .+++.|.++|.+.|.|++....+
T Consensus 83 ~~~--~g~vtal~~S~--i-GFvaigy~~G~l~viD~RGPavI 120 (395)
T PF08596_consen 83 DAK--QGPVTALKNSD--I-GFVAIGYESGSLVVIDLRGPAVI 120 (395)
T ss_dssp -----S-SEEEEEE-B--T-SEEEEEETTSEEEEEETTTTEEE
T ss_pred ecc--CCcEeEEecCC--C-cEEEEEecCCcEEEEECCCCeEE
Confidence 122 36799999986 4 79999999999999999876543
No 370
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.43 E-value=0.57 Score=41.00 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=54.3
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC----------Cce-e--EEEe------ecCCCcceEEEEEeeCC-CC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----------HRT-V--SSSW------VHSAAHGIVSVATGPSI-GL 76 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~----------~~~-~--~~~~------~~~~~~~v~~~~~~~~~-~~ 76 (270)
-.-.|..+.++|+|.+||..|..| |.|-.+.. ++. + +++. .......|..+.|+|.. ++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 345789999999999999988876 55555432 111 1 1111 11112568999999942 25
Q ss_pred CEEEEEeCCCcEEEEEccCCc
Q 024245 77 NKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 77 ~~l~s~~~d~~i~~wd~~~~~ 97 (270)
.+|+.-..|+++|+||+....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CeEEEEecCCEEEEEecCCCC
Confidence 789999999999999997543
No 371
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.37 E-value=0.05 Score=43.86 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=62.0
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC--C------------
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--G------------ 75 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~------------ 75 (270)
....|......+.++..+|++++.|+...-|.|.++|+.++..++.+++.... .+.|.... .
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA----qc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA----QCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc----eEEEEEeecccccccccccccCC
Confidence 44556666778999999999999999888899999999999888888776542 22222100 0
Q ss_pred ----CCE-EEEEeCCCcEEEEEccCCccC
Q 024245 76 ----LNK-VISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 76 ----~~~-l~s~~~d~~i~~wd~~~~~~~ 99 (270)
..+ ++-+-.-|.|.||.++++..+
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCCCEE
Confidence 112 235667899999999988653
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.27 E-value=0.56 Score=39.30 Aligned_cols=68 Identities=21% Similarity=0.105 Sum_probs=45.9
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCC----cceE--EEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIV--SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~--~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 100 (270)
+..++.++.++.|.-.|..+++.+..+...... ..+. .+... ++..++.++.++.|.-+|.++++...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEee
Confidence 446777888899999999999888776543210 0010 11111 22678888889999999999987654
No 373
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.26 E-value=0.035 Score=28.55 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=26.0
Q ss_pred ccEEEEEEeCC-C--CEEEEecCCCcEEEEeCCC
Q 024245 19 ASVTDVCFHQT-K--PILFAGTTGGELRIWDTVQ 49 (270)
Q Consensus 19 ~~v~~~~~s~~-~--~~l~s~~~dg~i~vwd~~~ 49 (270)
++|+++.|+|+ + .+|+-+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999984 4 5888887889999999985
No 374
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.24 E-value=0.43 Score=40.73 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=48.8
Q ss_pred EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
.-+.-+.-++..+.-+....+.|||.+.+.....-.. ...+.|..+.|....+++.+++.+..+.|.+|--
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 3344444444444444455799999998765443332 1126799999987768999999999999999864
No 375
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.19 E-value=0.42 Score=37.03 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=41.0
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
.+.+..+..+++|+++++++.-..+.-||-....-...-.... .+|.+|.|.| ++.+.+. ...|.|+.=+
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~--~riq~~gf~~--~~~lw~~-~~Gg~~~~s~ 213 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSS--RRIQSMGFSP--DGNLWML-ARGGQIQFSD 213 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SS--S-EEEEEE-T--TS-EEEE-ETTTEEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCcc--ceehhceecC--CCCEEEE-eCCcEEEEcc
Confidence 4678888889999999888776666678754322222222233 6699999999 8666554 4788888776
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.15 E-value=0.73 Score=39.48 Aligned_cols=59 Identities=10% Similarity=-0.043 Sum_probs=37.6
Q ss_pred ccEEEEEEeCCCCEEEEec------CCC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 19 ASVTDVCFHQTKPILFAGT------TGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
..+...+++|+|+.++... .|. .|.+++.. +.......+ .....-.|+| +|..|++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g----~~~t~PsWsp--DG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG----HSLTRPSWSL--DADAVWVVVD 416 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC----CCCCCceECC--CCCceEEEec
Confidence 4678889999999776654 243 45555542 333222222 2278889999 9888877654
No 377
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.93 E-value=0.034 Score=48.37 Aligned_cols=71 Identities=10% Similarity=0.158 Sum_probs=53.1
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
.....|++-+.+| +||.|+.+|.||+||--..+....+++-+ ++|.+|..+. ||++|++.+ +..|.+++..
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~--DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTA--DGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecC--CCcEEEEee-cceEEEEEEe
Confidence 4456777777777 89999999999999954333333455555 7799999999 999988665 4577888763
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.83 E-value=0.64 Score=36.17 Aligned_cols=210 Identities=14% Similarity=0.097 Sum_probs=98.3
Q ss_pred EEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCc
Q 024245 25 CFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS 103 (270)
Q Consensus 25 ~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 103 (270)
.|.++.. ++.+--..+.|.-|+..+++.. .+... +.+.++.... .+..|+++.. -+.+++.+++.... .+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p---~~~~~~~~~d--~~g~Lv~~~~--g~~~~~~~~~~~~t-~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP---GGFSSGALID--AGGRLIACEH--GVRLLDPDTGGKIT-LL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC---CCcccceeec--CCCeEEEEcc--ccEEEeccCCceeE-Ee
Confidence 4566555 5666666788888888755433 33322 2244554444 4455555433 25666665444311 01
Q ss_pred ccee-c---ccceEEEEeeccCC-----c---cceecCCCCceEEEecc-Cceeee--c-cCCCCCeEecCCCCeEEEEe
Q 024245 104 LTIK-T---NSYHFCKLSLVKEP-----Y---ANAKQANEPKDCYEREV-GETVDT--D-SLCDSKDDVPAEGPKYMAVA 167 (270)
Q Consensus 104 ~~~~-~---~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~~~s~~~~~~~~~~ 167 (270)
.... . .......+...+.- . ...........+|.+.. +...+. . +...+.++||||++.+++ +
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~-a 180 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV-A 180 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE-E
Confidence 1111 0 11111111111100 0 00000111123455552 222221 1 223333999999998776 4
Q ss_pred cCCCceEEEEeCCC--cceee----eeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC-cEEEEEcCC
Q 024245 168 GEQLSEVEIWDLNT--AERCT----RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRN 240 (270)
Q Consensus 168 ~~~d~~i~iwd~~~--~~~~~----~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg-~i~vwd~~~ 240 (270)
=+..+.|.-|++.. +.... .+.. .......+.+ .. .+|. +.+++..+| .|.+|+..
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~-------~~~G~PDG~~-----vD---adG~-lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFD-------EEPGLPDGMA-----VD---ADGN-LWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEcc-------CCCCCCCceE-----Ee---CCCC-EEEecccCCceEEEECCC-
Confidence 44567888887752 11111 1110 0001111111 22 2465 332443443 89999977
Q ss_pred CCcceeeeeccCCCeeEEEeec
Q 024245 241 PGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
++++..+......+++++|--
T Consensus 244 -G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 244 -GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred -CcEEEEEECCCCCCccceEeC
Confidence 677777777667778888754
No 379
>PHA02713 hypothetical protein; Provisional
Probab=95.83 E-value=0.61 Score=39.77 Aligned_cols=21 Identities=0% Similarity=-0.035 Sum_probs=16.5
Q ss_pred CCceEEEEecCCC--cEEEEEcCC
Q 024245 219 QGFVNVLAGYEDG--SILVWDIRN 240 (270)
Q Consensus 219 ~g~~~l~~~~~dg--~i~vwd~~~ 240 (270)
+|+ +.++|+.|| .+..||..+
T Consensus 512 ~~~-iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 512 DNT-IMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCE-EEEEeeecceeehhhcCccc
Confidence 455 788888888 788888887
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.68 E-value=0.68 Score=35.37 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=43.9
Q ss_pred CCCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 29 TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 29 ~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
.++.|+.|..+| |.++++.. ......... ..|..+...| +-+.|++-+ |+.+.++++..-.
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~ 67 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLE 67 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEec--ccCEEEEEc-CCccEEEEchhhc
Confidence 567899999998 99999833 333333322 3399999999 666666554 5999999997654
No 381
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.46 Score=34.18 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCCCEEEEEeCC--CcEEEEEccCCccCC
Q 024245 65 IVSVATGPSIGLNKVISQGRD--GTVKCWDIENGGLSS 100 (270)
Q Consensus 65 v~~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~ 100 (270)
-..+... ++.++.+.+.- ..|++||+++++...
T Consensus 48 TQGL~~~---~g~i~esTG~yg~S~ir~~~L~~gq~~~ 82 (262)
T COG3823 48 TQGLEYL---DGHILESTGLYGFSKIRVSDLTTGQEIF 82 (262)
T ss_pred hcceeee---CCEEEEeccccccceeEEEeccCceEEE
Confidence 3445544 34666666653 379999999887543
No 382
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.39 E-value=0.08 Score=27.26 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=25.4
Q ss_pred ceEEEEEeeCCCC--CEEEEEeCCCcEEEEEccCC
Q 024245 64 GIVSVATGPSIGL--NKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 64 ~v~~~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~ 96 (270)
.|.++.|+|. ++ ++|+.+-..+.|.++|++++
T Consensus 2 AvR~~kFsP~-~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPE-PGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCC-CCcccEEEEEccCCeEEEEEcccC
Confidence 4899999973 23 57787778889999999964
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.20 E-value=1.4 Score=36.01 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=23.0
Q ss_pred eEEEEEeeCCCCCEEE-EEeCCC----cEEEEEccCCcc
Q 024245 65 IVSVATGPSIGLNKVI-SQGRDG----TVKCWDIENGGL 98 (270)
Q Consensus 65 v~~~~~~~~~~~~~l~-s~~~d~----~i~~wd~~~~~~ 98 (270)
+....++| ++++++ +.+..| .++++|+++++.
T Consensus 126 ~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 126 LGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp EEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred eeeeeECC--CCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 34567888 989887 334444 599999999854
No 384
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.12 E-value=0.087 Score=42.30 Aligned_cols=165 Identities=12% Similarity=0.110 Sum_probs=85.5
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee-EEEeec-CCC--cceE-EEEEeeCCCCCEEEEEe
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-SSSWVH-SAA--HGIV-SVATGPSIGLNKVISQG 83 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~-~~~--~~v~-~~~~~~~~~~~~l~s~~ 83 (270)
+.++.+..--+.|..+-..|||+.++.-+. .++.|+++.+.... +.+... .++ ..|. ++..-. .|.-++.++
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~--Gg~SLLv~~ 287 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS--GGFSLLVVH 287 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh--CceeEEEEc
Confidence 344445555677888899999997776655 57899998764321 112111 100 1122 222223 566788899
Q ss_pred CCCcEEEE-EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccC-----------cee-ee-ccC
Q 024245 84 RDGTVKCW-DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG-----------ETV-DT-DSL 149 (270)
Q Consensus 84 ~d~~i~~w-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~-~~~ 149 (270)
.||-|.-| |++.+.... -.+...++....+............++.+... +.+ .. ..+
T Consensus 288 ~dG~vsQWFdvr~~~~p~---------l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPH---------LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred CCCceeeeeeeecCCCCc---------ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc
Confidence 99999887 555443211 11122222222222222222222222222211 111 11 112
Q ss_pred CCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeee
Q 024245 150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (270)
Q Consensus 150 ~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 188 (270)
+...+++||.+.+++. .+.|.|+++.+.+..+-.++
T Consensus 359 ~~~~~~~Sp~~~~Ll~---e~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 359 APQLVAMSPNQAYLLS---EDQGKIRLAQLENRNPEISW 394 (733)
T ss_pred CcceeeeCcccchhee---ecCCceEEEEecCCCCCccH
Confidence 2222899999998874 34588999988765543333
No 385
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.76 E-value=2.3 Score=36.12 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=45.8
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceE----------EEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV----------SVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
+..|+.++.++.|.-.|..+|+.+..+..... ..+. .+++. +..++.++.|+.|.-.|.++++..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~----~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY----DGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE----CCEEEEEcCCCEEEEEECCCCCEE
Confidence 44677778888999999999998877654321 1111 12222 256777888999999999998865
Q ss_pred C
Q 024245 100 S 100 (270)
Q Consensus 100 ~ 100 (270)
.
T Consensus 144 W 144 (527)
T TIGR03075 144 W 144 (527)
T ss_pred e
Confidence 4
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.74 E-value=0.3 Score=41.69 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=50.1
Q ss_pred eEecCCCCeEEEEec------CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245 154 DDVPAEGPKYMAVAG------EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
.+++|+|+.++++.. .....|.+++.. +.. ..+.. +. ....-. |+|+ |+ .|++.
T Consensus 355 paiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-------g~------~~t~Ps-WspD---G~-~lw~v 414 (591)
T PRK13616 355 AALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-------GH------SLTRPS-WSLD---AD-AVWVV 414 (591)
T ss_pred ceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-------CC------CCCCce-ECCC---CC-ceEEE
Confidence 789999998776552 222356665652 222 33321 11 133444 9985 33 34443
Q ss_pred c------------CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 228 Y------------EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 228 ~------------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
. ..+.+.+.+++. ++... .....|..++|||||..|
T Consensus 415 ~dg~~~~~v~~~~~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG~Ri 462 (591)
T PRK13616 415 VDGNTVVRVIRDPATGQLARTPVDA-SAVAS---RVPGPISELQLSRDGVRA 462 (591)
T ss_pred ecCcceEEEeccCCCceEEEEeccC-chhhh---ccCCCcCeEEECCCCCEE
Confidence 2 233455555554 33322 234579999999999876
No 387
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.73 E-value=0.69 Score=38.69 Aligned_cols=78 Identities=9% Similarity=0.056 Sum_probs=42.3
Q ss_pred ccccEEEEEEeCC----CCEEEEecCCCcEEEEeCCC-----CceeEEEeecCCC-c--ceEEEEEeeCCCCCEEEEEeC
Q 024245 17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAA-H--GIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 17 h~~~v~~~~~s~~----~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~-~--~v~~~~~~~~~~~~~l~s~~~ 84 (270)
.-+.|..++|.|- -..|.+..-...|.||.+.. .+.+.....+-.+ - --..+.|+| ....|+.-..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~ 132 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTA 132 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEec
Confidence 3356999999994 22344445567899999852 2222222111100 1 124678999 7566665444
Q ss_pred CCcEEEEEccCC
Q 024245 85 DGTVKCWDIENG 96 (270)
Q Consensus 85 d~~i~~wd~~~~ 96 (270)
...=.++++...
T Consensus 133 ~dvSV~~sV~~d 144 (671)
T PF15390_consen 133 RDVSVLPSVHCD 144 (671)
T ss_pred CceeEeeeeeeC
Confidence 433345555433
No 388
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.67 E-value=0.39 Score=35.36 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=48.9
Q ss_pred EeCCCCEEEEecCCCcEEEEeCCCCceeEEE-------ee-----cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSS-------WV-----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 26 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
+..++.+|++-+.+|.+++||+.+++.+..- .. ......|..+.++. +|.-+++-+ +|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEecc
Confidence 3346788999999999999999987654321 11 01225588888887 877777655 577888887
Q ss_pred cCCcc
Q 024245 94 ENGGL 98 (270)
Q Consensus 94 ~~~~~ 98 (270)
.-+..
T Consensus 95 ~L~~W 99 (219)
T PF07569_consen 95 DLGCW 99 (219)
T ss_pred cccee
Confidence 76543
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.40 E-value=2.9 Score=35.85 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=40.2
Q ss_pred CCCEEEEecCC------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC-----cEEEEEccCCc
Q 024245 29 TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGG 97 (270)
Q Consensus 29 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 97 (270)
++.+.++|+.| .++..||...++....-....... =.+++.. +|...+.|+.|| ++..||..+.+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-DFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-cceeEEE---CCEEEEEeccccccccccEEEecCCCCc
Confidence 34677888888 357788887776554222222111 1122222 457778888886 57788888776
Q ss_pred cC
Q 024245 98 LS 99 (270)
Q Consensus 98 ~~ 99 (270)
..
T Consensus 408 W~ 409 (571)
T KOG4441|consen 408 WT 409 (571)
T ss_pred cc
Confidence 53
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.24 E-value=1.6 Score=32.19 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=60.0
Q ss_pred eEecCCCCeEEEEecCCCceEEEEe--CCCcce-----eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWD--LNTAER-----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd--~~~~~~-----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (270)
++|+.+.+.+.. .-+.+-+|.-|| ..+|.. +..++.. ....+.. ..+.+ ..- +|. +.++
T Consensus 163 l~Wd~d~K~fY~-iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~---~~~e~~~-PDGm~-----ID~---eG~-L~Va 228 (310)
T KOG4499|consen 163 LAWDSDAKKFYY-IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS---QPFESLE-PDGMT-----IDT---EGN-LYVA 228 (310)
T ss_pred ccccccCcEEEE-EccCceEEeeeecCCCcccccCcceeEEeccC---CCcCCCC-CCcce-----Ecc---CCc-EEEE
Confidence 788888877765 455677887787 555542 2233210 0001100 11111 221 455 6777
Q ss_pred ecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 227 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
.-..|+|...|..+ ++.+.+++-....|++++|--
T Consensus 229 ~~ng~~V~~~dp~t-GK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTT-GKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EecCcEEEEECCCC-CcEEEEEEcCCCceEEEEecC
Confidence 77788999999999 899999998889999999953
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.04 E-value=0.21 Score=36.28 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE--eCCCcEEEEEccC
Q 024245 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ--GRDGTVKCWDIEN 95 (270)
Q Consensus 29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~ 95 (270)
++.+..++..||.|+.|++.-++.+.....|.. .++.....+. .+..+..+ |.|..++.|++..
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccC-CCcceeEEec--CCceEEeeccccchhhhhcchhh
Confidence 455888999999999999998888777666653 2233333333 33555555 6666666666654
No 392
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.99 E-value=0.4 Score=24.36 Aligned_cols=41 Identities=10% Similarity=0.044 Sum_probs=28.2
Q ss_pred CCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEee
Q 024245 219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMW 261 (270)
Q Consensus 219 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s 261 (270)
+++.++++...++.|.++|..+ .+.+..+.. ......++|+
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC-CCCCceEEeC
Confidence 3443566666788999999988 777777765 3445566653
No 393
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.97 E-value=0.69 Score=37.52 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=53.3
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC-----------CCCCce
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS-----------KSQGFV 222 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~-----------~~~g~~ 222 (270)
++.+|++. +.++ ...-|.|.|+|+..+..++.++ |..+...+.+.... -... .....+
T Consensus 313 i~~sP~~~-laA~-tDslGRV~LiD~~~~~vvrmWK--------GYRdAqc~wi~~~~-~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 313 ICLSPSGR-LAAV-TDSLGRVLLIDVARGIVVRMWK--------GYRDAQCGWIEVPE-EGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred EEECCCCC-EEEE-EcCCCcEEEEECCCChhhhhhc--------cCccceEEEEEeec-ccccccccccccCCCCcceEE
Confidence 78889976 4443 4557999999999999998888 55443333332211 1000 001223
Q ss_pred EEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 223 NVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
+++-.-.-|.|.||.+++ +..+..+.
T Consensus 382 LvIyaprRg~lEvW~~~~-g~Rv~a~~ 407 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQ-GPRVAAFN 407 (415)
T ss_pred EEEEeccCCeEEEEecCC-CCEEEEEE
Confidence 455566789999999998 66665554
No 394
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.92 E-value=0.36 Score=24.52 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=24.4
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 189 (270)
|++++++++ ...+++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~-~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVT-NSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEE-eCCCCEEEEEECCCCeEEEEEE
Confidence 567777764 4457899999999888887776
No 395
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.17 E-value=2.8 Score=31.55 Aligned_cols=75 Identities=9% Similarity=0.189 Sum_probs=47.2
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc------eeEEEe--ec-CCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------TVSSSW--VH-SAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~--~~-~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
+..-++++..++.++++--+++.+.+.++.... ....+. .. .++..+..++|.| .++.|+.+-+.....
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~--~~~~L~v~kE~~P~~ 142 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP--KTNRLFVAKERKPKR 142 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET--TTTEEEEEEESSSEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC--CCCEEEEEeCCCChh
Confidence 456778887778777776678999999884321 112222 11 2225689999999 777888787777778
Q ss_pred EEEccC
Q 024245 90 CWDIEN 95 (270)
Q Consensus 90 ~wd~~~ 95 (270)
+|.+..
T Consensus 143 l~~~~~ 148 (248)
T PF06977_consen 143 LYEVNG 148 (248)
T ss_dssp EEEEES
T ss_pred hEEEcc
Confidence 887765
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=0.35 Score=39.71 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=48.7
Q ss_pred EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
-.|.+-..+| ++|.||.+|.|++||--..+....+++-. .+|..|..+. +|.+|+..+ +..+.+-++.
T Consensus 433 Fsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvta--dGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 433 FSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTA--DGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeec--cCcEEEEec-ccEEEEEEEe
Confidence 3444444455 89999999999999974334444566666 6699999999 988887555 4567777654
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.80 E-value=0.76 Score=33.52 Aligned_cols=41 Identities=24% Similarity=0.196 Sum_probs=28.7
Q ss_pred EEEEecCCCcEEEEEcCCCCcceeeeeccC-CCeeEEEeecCC
Q 024245 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPGLECSMWRNP 264 (270)
Q Consensus 223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~s~~g 264 (270)
+..+++.||.|+.|++.- .+.+.....|. .++..+..+..+
T Consensus 116 ~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd 157 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSD 157 (238)
T ss_pred eeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCC
Confidence 888999999999999886 66666666666 455444444433
No 398
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.78 E-value=4.7 Score=33.02 Aligned_cols=154 Identities=11% Similarity=-0.040 Sum_probs=74.6
Q ss_pred EEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245 22 TDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
+.+-|....+.|++. ..|.+.=|-++.. ...-.+.... +++|.++.|++ |.+.|+.--.+.+|.+++....+..
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d-~G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDD-KGEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecC-CCceeEEEecc--CcceEEEEecCceEEEEecCCCchh
Confidence 445555444444333 3344666655432 2222333222 26799999999 9888999999999999988443322
Q ss_pred CCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEE
Q 024245 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVE 175 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~ 175 (270)
.......+.....+..+.+..+ ....+........+.+...+........+.. ..|.++-...+++++-..+++.
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln 180 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN 180 (657)
T ss_pred hHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence 1112222222332333333333 2233333334444433322221111222222 5677777666665553334443
Q ss_pred EEeCC
Q 024245 176 IWDLN 180 (270)
Q Consensus 176 iwd~~ 180 (270)
=+.++
T Consensus 181 pf~~~ 185 (657)
T KOG2377|consen 181 PFHFR 185 (657)
T ss_pred cEEEe
Confidence 34333
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.71 E-value=3.1 Score=30.78 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=32.3
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p 215 (270)
+++..+|.. ++++ -..++|.-.|..+|+.+.+++. ....+++++ |--
T Consensus 217 m~ID~eG~L-~Va~-~ng~~V~~~dp~tGK~L~eikl------------Pt~qitscc-FgG 263 (310)
T KOG4499|consen 217 MTIDTEGNL-YVAT-FNGGTVQKVDPTTGKILLEIKL------------PTPQITSCC-FGG 263 (310)
T ss_pred ceEccCCcE-EEEE-ecCcEEEEECCCCCcEEEEEEc------------CCCceEEEE-ecC
Confidence 555556654 4333 3468999999999999999984 234566666 763
No 400
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.59 E-value=7.3 Score=34.79 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=44.3
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCC----------CcceEEEEEeeCCCCCEEEEEeC----------CCcEE
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQGR----------DGTVK 89 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~----------d~~i~ 89 (270)
+..++.++.|+.|.-.|.++|+....+..... ...-..+.-.|.-.++.++.++. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 34788888999999999999998876642210 00000111112112356666643 68899
Q ss_pred EEEccCCccCC
Q 024245 90 CWDIENGGLSS 100 (270)
Q Consensus 90 ~wd~~~~~~~~ 100 (270)
-+|.++++...
T Consensus 340 A~Da~TGkl~W 350 (764)
T TIGR03074 340 AFDVNTGALVW 350 (764)
T ss_pred EEECCCCcEee
Confidence 99999998754
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.27 E-value=3.1 Score=31.50 Aligned_cols=94 Identities=9% Similarity=-0.017 Sum_probs=49.8
Q ss_pred eEecCCCCeEEEEec-CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245 154 DDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~ 232 (270)
.+++++++.+.+++. .....+.++. .+.....+.. +. ...... |+++ +. ..+....+..
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~-------g~------~l~~PS-~d~~---g~-~W~v~~~~~~ 88 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLT-------GG------SLTRPS-WDPD---GW-VWTVDDGSGG 88 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeecc-------CC------cccccc-ccCC---CC-EEEEEcCCCc
Confidence 779999987776551 2234444444 3333333321 11 334444 8884 44 4444455556
Q ss_pred EEEEE-cCCCCcceeeeecc--CCCeeEEEeecCCCce
Q 024245 233 ILVWD-IRNPGIPLTAMKVH--LEPGLECSMWRNPITM 267 (270)
Q Consensus 233 i~vwd-~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l 267 (270)
.+++. ...+.......... ...|..+++||||..+
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~Rv 126 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRV 126 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEE
Confidence 66663 33312222222211 1289999999999875
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.21 E-value=3.8 Score=33.38 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=38.2
Q ss_pred EEEEEEeCCCCEEEEec--------------------CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCE-E
Q 024245 21 VTDVCFHQTKPILFAGT--------------------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-V 79 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l 79 (270)
-..+-|.|..+.++|.. .-.++.+||+.+.+.++++...........|.|....+..+ +
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 35666777777777753 34689999999999999998654223356777754213333 3
Q ss_pred EEEeCCCcEEEE
Q 024245 80 ISQGRDGTVKCW 91 (270)
Q Consensus 80 ~s~~~d~~i~~w 91 (270)
+.+-...+|..|
T Consensus 263 vg~aLss~i~~~ 274 (461)
T PF05694_consen 263 VGCALSSSIWRF 274 (461)
T ss_dssp EEEE--EEEEEE
T ss_pred EEEeccceEEEE
Confidence 333334444444
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.99 E-value=6.9 Score=33.18 Aligned_cols=163 Identities=10% Similarity=0.141 Sum_probs=81.9
Q ss_pred ccccEEEEEEeCCCCEEEEec--CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC--CCCEEEEEeCCCcEEEEE
Q 024245 17 HRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~d~~i~~wd 92 (270)
--.+|..++|......+.+.- ..|.++.=| .+.+..| ..|..+.|.|.. +.-.|++.-..+.|.||.
T Consensus 18 AiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF------EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 18 AIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF------EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred hhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc------ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 345788999974333444432 223332221 1122222 338999999831 122455556677899999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC-CCCeEecCCCCeEEEEecCCC
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-DSKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~d 171 (270)
+........-.. ....|.+. ..+.. .++..|+|...-+.+.++ .|
T Consensus 89 L~~s~~e~~K~l-----~sQtcEi~----------------------------e~~pvLpQGCVWHPk~~iL~VLT~-~d 134 (671)
T PF15390_consen 89 LCPSTTERNKLL-----MSQTCEIR----------------------------EPFPVLPQGCVWHPKKAILTVLTA-RD 134 (671)
T ss_pred eccCccccccce-----eeeeeecc----------------------------CCcccCCCcccccCCCceEEEEec-Cc
Confidence 863321110000 00111110 00111 111568898876665555 34
Q ss_pred ceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 172 SEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 172 ~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
-. .+++++... ...-++ ..+.+.+.+ |.++ |+.++++.+..=.-++||-..
T Consensus 135 vS-V~~sV~~d~srVkaDi~-------------~~G~IhCAC-WT~D---G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 135 VS-VLPSVHCDSSRVKADIK-------------TSGLIHCAC-WTKD---GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ee-EeeeeeeCCceEEEecc-------------CCceEEEEE-ecCc---CCEEEEEeCCeEEEEEecCch
Confidence 33 356665433 222233 345666766 9984 553555556666788998553
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.95 E-value=7.5 Score=33.48 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=42.5
Q ss_pred CCCEEEEecCC------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC------CcEEEEEccCC
Q 024245 29 TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENG 96 (270)
Q Consensus 29 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~ 96 (270)
.+.+++.|+.+ ..+..+|..+++.......... ..-.++++.. + ...++|+.| .++..||..++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~~--~-~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVLN--G-KLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEEC--C-EEEEEccccCCCcccceEEEecCCCC
Confidence 45577778777 3688889887754443322221 2244555554 3 777888888 35778888877
Q ss_pred ccCC
Q 024245 97 GLSS 100 (270)
Q Consensus 97 ~~~~ 100 (270)
+...
T Consensus 360 ~W~~ 363 (571)
T KOG4441|consen 360 QWTP 363 (571)
T ss_pred ceec
Confidence 6543
No 405
>PHA02713 hypothetical protein; Provisional
Probab=91.77 E-value=7.8 Score=33.30 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=33.9
Q ss_pred CCCEEEEecCC------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC-----cEEEEEccCCc
Q 024245 29 TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGG 97 (270)
Q Consensus 29 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 97 (270)
++.+.+.|+.+ ..+..||..++.....-......... +++.. ++...+.|+.++ ++..||..+++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE---CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 45566666653 34677887766433211111110111 22222 446667777654 47788887765
Q ss_pred c
Q 024245 98 L 98 (270)
Q Consensus 98 ~ 98 (270)
.
T Consensus 379 W 379 (557)
T PHA02713 379 W 379 (557)
T ss_pred E
Confidence 4
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.63 E-value=4.7 Score=30.53 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=72.4
Q ss_pred eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC
Q 024245 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129 (270)
Q Consensus 52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (270)
.+.++. |....-...+.|.. ++.++-+.+.-| .|+.+|+.+++... ...++.. .....+.
T Consensus 35 vv~~yp-Hd~~aFTQGL~~~~--~g~LyESTG~yG~S~l~~~d~~tg~~~~--~~~l~~~-~FgEGit------------ 96 (264)
T PF05096_consen 35 VVETYP-HDPTAFTQGLEFLD--DGTLYESTGLYGQSSLRKVDLETGKVLQ--SVPLPPR-YFGEGIT------------ 96 (264)
T ss_dssp EEEEEE---TT-EEEEEEEEE--TTEEEEEECSTTEEEEEEEETTTSSEEE--EEE-TTT---EEEEE------------
T ss_pred EEEECC-CCCcccCccEEecC--CCEEEEeCCCCCcEEEEEEECCCCcEEE--EEECCcc-ccceeEE------------
Confidence 344444 44446678899977 767777888766 79999999987543 1111111 1111111
Q ss_pred CCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeee
Q 024245 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA 209 (270)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 209 (270)
.. +..++..+= .++...+||..+-+.+.++.- .+.-+.
T Consensus 97 --------------------------~~--~d~l~qLTW-k~~~~f~yd~~tl~~~~~~~y-------------~~EGWG 134 (264)
T PF05096_consen 97 --------------------------IL--GDKLYQLTW-KEGTGFVYDPNTLKKIGTFPY-------------PGEGWG 134 (264)
T ss_dssp --------------------------EE--TTEEEEEES-SSSEEEEEETTTTEEEEEEE--------------SSS--E
T ss_pred --------------------------EE--CCEEEEEEe-cCCeEEEEccccceEEEEEec-------------CCcceE
Confidence 11 234444454 579999999999988888872 223344
Q ss_pred eeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 210 ~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
++ . |+. .|+.......++++|..+ .+....+.
T Consensus 135 Lt-~-----dg~-~Li~SDGS~~L~~~dP~~-f~~~~~i~ 166 (264)
T PF05096_consen 135 LT-S-----DGK-RLIMSDGSSRLYFLDPET-FKEVRTIQ 166 (264)
T ss_dssp EE-E-----CSS-CEEEE-SSSEEEEE-TTT--SEEEEEE
T ss_pred EE-c-----CCC-EEEEECCccceEEECCcc-cceEEEEE
Confidence 43 2 444 455555566899999876 44444443
No 407
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.57 E-value=5.6 Score=31.28 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=46.4
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
..++|++++-- ++. |+.+. .+.|.+|++...+ ....-..+.. ..+.++.... ++++.|...+.+.++.++.
T Consensus 87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~~~----~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSVFK----NYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEEET----TEEEEEESSSSEEEEEEET
T ss_pred ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecce-EEEEEEeccc----cEEEEEEcccCEEEEEEEc
Confidence 46788888866 444 44443 3689999998877 4443333322 3466666654 7999999888888886654
No 408
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.50 E-value=6.8 Score=32.13 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=23.2
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCC
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTV 48 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 48 (270)
+.|-++.|+.+. .|+.-..||.++++|+.
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 678888888755 45566789999999987
No 409
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=2.4 Score=34.52 Aligned_cols=77 Identities=8% Similarity=0.142 Sum_probs=52.5
Q ss_pred ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE--eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
-.-+++|.++.||+|.+.||.--.|++|.+++....+....+ ........|....|+. + .-++-.+..| +.+|-
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s-~e~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--S-TEIAFITDQG-IEFYQ 138 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--C-eeEEEEecCC-eEEEE
Confidence 345679999999999999999999999999998544332221 1222225589999987 5 4555555444 56665
Q ss_pred ccC
Q 024245 93 IEN 95 (270)
Q Consensus 93 ~~~ 95 (270)
...
T Consensus 139 v~p 141 (657)
T KOG2377|consen 139 VLP 141 (657)
T ss_pred Ech
Confidence 543
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.38 E-value=7.7 Score=35.67 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=33.4
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p 215 (270)
++|+|.|+.+++ |...|++.-|... .+....+.++ .......+.+++ |--
T Consensus 204 v~WSprGKQl~i--G~nnGt~vQy~P~-leik~~ip~P--------p~~e~yrvl~v~-Wl~ 253 (1405)
T KOG3630|consen 204 VLWSPRGKQLFI--GRNNGTEVQYEPS-LEIKSEIPEP--------PVEENYRVLSVT-WLS 253 (1405)
T ss_pred EEeccccceeeE--ecCCCeEEEeecc-cceeecccCC--------CcCCCcceeEEE-Eec
Confidence 899999998875 7778998888654 5555555521 122245677776 764
No 411
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.05 E-value=6 Score=30.63 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=49.5
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCC------CC-ceeEEEeecC---CCcceEEEEEeeCC----------CCCEE
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTV------QH-RTVSSSWVHS---AAHGIVSVATGPSI----------GLNKV 79 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~------~~-~~~~~~~~~~---~~~~v~~~~~~~~~----------~~~~l 79 (270)
.-+.|+|+|.+.+-++....+...+||.. .. ..+-.+.... .+...+.+.|+... ....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45899999999888887778899999986 12 2232333111 11457788887510 11236
Q ss_pred EEEeCCCcEEEEEcc
Q 024245 80 ISQGRDGTVKCWDIE 94 (270)
Q Consensus 80 ~s~~~d~~i~~wd~~ 94 (270)
+.+++||+|.-|...
T Consensus 104 if~tEdGTisaW~p~ 118 (336)
T TIGR03118 104 LFVTEDGTLSGWAPA 118 (336)
T ss_pred EEEeCCceEEeecCc
Confidence 778899999999854
No 412
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.85 E-value=0.38 Score=42.23 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=43.9
Q ss_pred EEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEE-----------EEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV-----------ATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 24 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
+-|-++..++..+-.+++|++-++.+... ..+.+|. ..+..+ ..+| ||..|++++.||.++.|.
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs--~~~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHS--QRVTDMAFFAEGVLKLASLSP--DGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH-HHHHhcC--CCcccHHHHhhchhhheeeCC--CCcEEEEeecCCccceee
Confidence 33444667888888889998877664322 3333444 223332 3678 899999999999999887
Q ss_pred cc
Q 024245 93 IE 94 (270)
Q Consensus 93 ~~ 94 (270)
+.
T Consensus 264 iy 265 (1283)
T KOG1916|consen 264 IY 265 (1283)
T ss_pred ee
Confidence 64
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.65 E-value=3.4 Score=35.63 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=56.0
Q ss_pred cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC-----CC-
Q 024245 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR-----NP- 241 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~-----~~- 241 (270)
.+....+.|||.+.+...+.-. . ...+.+..+. |... ++|+ .+++.+....|.+|--. +.
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~---------f--~~~~~I~dLD-Wtst-~d~q-siLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEES---------F--SEDDPIRDLD-WTST-PDGQ-SILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeee---------e--cCCCceeece-eeec-CCCC-EEEEEEcCcEEEEEEccchhhhcCC
Confidence 4446789999999887443322 1 1245677777 7755 3677 67777778888887531 11
Q ss_pred --Ccceeee--eccC-CCeeEEEeecCCCcee
Q 024245 242 --GIPLTAM--KVHL-EPGLECSMWRNPITMS 268 (270)
Q Consensus 242 --~~~~~~~--~~~~-~~v~~~~~s~~g~~ls 268 (270)
..++..+ ..|+ .+|.+..|-+||..+.
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV 144 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV 144 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEE
Confidence 1233333 2344 6899999999998874
No 414
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.64 E-value=12 Score=33.28 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=34.9
Q ss_pred CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 203 ~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
....+..+. |+|.+.++. .|+.=..|+++++||+..+..+..++.
T Consensus 145 ~~~~i~qv~-WhP~s~~~~-~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 145 SSLEIKQVR-WHPWSESDS-HLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCceEEEEE-EcCCCCCCC-eEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 345677777 999875566 788888999999999988666666654
No 415
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.23 E-value=1.6 Score=37.33 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=40.4
Q ss_pred CCCCEEEEecCCCcEEEEeCCC----CceeEEEee---------------c-----CCCcceEEEEEee--CCCCCEEEE
Q 024245 28 QTKPILFAGTTGGELRIWDTVQ----HRTVSSSWV---------------H-----SAAHGIVSVATGP--SIGLNKVIS 81 (270)
Q Consensus 28 ~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~---------------~-----~~~~~v~~~~~~~--~~~~~~l~s 81 (270)
++...++.+..||.+....... +........ . .....+..+++.. ..+..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3556777788888888877654 211111100 0 0012234444433 224578999
Q ss_pred EeCCCcEEEEEccCCccC
Q 024245 82 QGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 82 ~~~d~~i~~wd~~~~~~~ 99 (270)
.+.|+++|+||+.++.++
T Consensus 236 l~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EETTSEEEEEETTTTCEE
T ss_pred EeCCCeEEEEECCCCeEE
Confidence 999999999999999873
No 416
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.20 E-value=0.92 Score=38.67 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=28.5
Q ss_pred ccEEEEEEeC----CCCEEEEecCCCcEEEEeCCCCceeEEE
Q 024245 19 ASVTDVCFHQ----TKPILFAGTTGGELRIWDTVQHRTVSSS 56 (270)
Q Consensus 19 ~~v~~~~~s~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 56 (270)
..+..++.+. +..+|++.+.|+.+|+||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455566665 6679999999999999999999996655
No 417
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.09 E-value=3.6 Score=29.02 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=25.3
Q ss_pred ceEEEEEeeC----CCCCEEEEEeCCCcEEEEEccC
Q 024245 64 GIVSVATGPS----IGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 64 ~v~~~~~~~~----~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
.|.+++|+|. +.+..|++...++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 5899999992 2235788899999999998764
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.95 E-value=4.1 Score=33.83 Aligned_cols=45 Identities=16% Similarity=0.029 Sum_probs=37.2
Q ss_pred EEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
++|+++..|.|++||--. ......+++....|..+..+.+|+.|-
T Consensus 575 yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~il 619 (776)
T COG5167 575 YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHIL 619 (776)
T ss_pred eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEE
Confidence 999999999999999654 444556777788999999999998763
No 419
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=89.90 E-value=8 Score=30.27 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=42.6
Q ss_pred cEEEEEEeCCCCEEEEecC-----------CCcEEEEeCC-CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC
Q 024245 20 SVTDVCFHQTKPILFAGTT-----------GGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG 86 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~-----------dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~ 86 (270)
.-+.+...|+|.+-++... -| .||.+. .+..++.+..+- ..-+.|+|+| +++.|+.+.. .+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G--~lyr~~p~g~~~~l~~~~~--~~~NGla~Sp--Dg~tly~aDT~~~ 185 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG--SLYRVDPDGGVVRLLDDDL--TIPNGLAFSP--DGKTLYVADTPAN 185 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcc--eEEEEcCCCCEEEeecCcE--EecCceEECC--CCCEEEEEeCCCC
Confidence 4456777788876555333 13 344444 455555554433 3357899999 9877765544 47
Q ss_pred cEEEEEccC
Q 024245 87 TVKCWDIEN 95 (270)
Q Consensus 87 ~i~~wd~~~ 95 (270)
.|.-|++..
T Consensus 186 ~i~r~~~d~ 194 (307)
T COG3386 186 RIHRYDLDP 194 (307)
T ss_pred eEEEEecCc
Confidence 777777753
No 420
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.72 E-value=12 Score=31.95 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=38.9
Q ss_pred cEEEEeCCCCceeEEEeecCCC-------cceEEEEEeeCCCCC---EEEEEeCCCcEEEEEccCCccC
Q 024245 41 ELRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIGLN---KVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 41 ~i~vwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
+|.--|+++|+....++...+. ....-+.+.. +|+ .++.+.++|.+.+.|-++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~--~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKK--DGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEecc--CCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 6777899999988887653321 1111222222 555 6779999999999999999764
No 421
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.60 E-value=7.7 Score=29.61 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=43.0
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe------------ecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW------------VHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.|..+...++-+.|++-+ |+.+.++++..-.....-. .......+...+......+...+.....+.
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 499999999777666554 5999999997643332100 000012344444111113344444445558
Q ss_pred EEEEEccCC
Q 024245 88 VKCWDIENG 96 (270)
Q Consensus 88 i~~wd~~~~ 96 (270)
|.+|.....
T Consensus 116 i~i~~~~~~ 124 (275)
T PF00780_consen 116 ILIYEWNDP 124 (275)
T ss_pred EEEEEEECC
Confidence 999988764
No 422
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.44 E-value=9.3 Score=30.32 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=33.7
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce---eEEEe--ecCCCcceEEEEEee
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSW--VHSAAHGIVSVATGP 72 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~--~~~~~~~v~~~~~~~ 72 (270)
.-+.|+|.|+|+++++ ...|.|++++ ..+.. +..+. ....+.....++++|
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence 4578999999988776 5599999999 44443 22221 112235689999999
No 423
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.27 E-value=8.5 Score=29.67 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=34.0
Q ss_pred EEEEecCCCcEEEEEcCCCCcceeeeeccCC-CeeEEEeecCCCcee
Q 024245 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PGLECSMWRNPITMS 268 (270)
Q Consensus 223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~ls 268 (270)
+-..+..|+-+.+-|+.++..|...-.-..+ .+.++..+++..++.
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE
Confidence 6666778999999999987777654443334 788888888877654
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.97 E-value=1.2 Score=32.87 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=31.4
Q ss_pred EEEEecCCCcEEEEEcCCCCcceee------ee-------ccCCCeeEEEeecCCCce
Q 024245 223 NVLAGYEDGSILVWDIRNPGIPLTA------MK-------VHLEPGLECSMWRNPITM 267 (270)
Q Consensus 223 ~l~~~~~dg~i~vwd~~~~~~~~~~------~~-------~~~~~v~~~~~s~~g~~l 267 (270)
+|++-..+|.+++||+.+....+.. +. .....|..+.++.+|.-|
T Consensus 24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi 81 (219)
T PF07569_consen 24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI 81 (219)
T ss_pred EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE
Confidence 8999999999999999983222111 11 244677888888877654
No 425
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.58 E-value=1.9 Score=21.40 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=18.8
Q ss_pred ccccEEEEEEeCCCCEEEEec-CC--CcEEEE
Q 024245 17 HRASVTDVCFHQTKPILFAGT-TG--GELRIW 45 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~-~d--g~i~vw 45 (270)
....-....|+|||+.|+-.+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445677899999998766544 44 555555
No 426
>PRK10115 protease 2; Provisional
Probab=88.54 E-value=17 Score=32.22 Aligned_cols=72 Identities=7% Similarity=-0.103 Sum_probs=45.8
Q ss_pred ccEEEEEEeCCCCEEEEec-----CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-C-----Cc
Q 024245 19 ASVTDVCFHQTKPILFAGT-----TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-D-----GT 87 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d-----~~ 87 (270)
-.+..+.++|+|++|+.+. +...|++-|+.+++.+....... -..++|.+ +++.|+-... + ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~----~~~~~w~~--D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV----EPSFVWAN--DSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc----ceEEEEee--CCCEEEEEEecCCCCCCCE
Confidence 3477789999999877643 23468889998776432221111 14699999 8776654432 2 35
Q ss_pred EEEEEccCC
Q 024245 88 VKCWDIENG 96 (270)
Q Consensus 88 i~~wd~~~~ 96 (270)
|..+++.++
T Consensus 201 v~~h~lgt~ 209 (686)
T PRK10115 201 VWRHTIGTP 209 (686)
T ss_pred EEEEECCCC
Confidence 667777776
No 427
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=88.54 E-value=10 Score=29.61 Aligned_cols=75 Identities=9% Similarity=0.026 Sum_probs=53.7
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
-|+++...++|.+|+|.-.-..|.+.|-++|+.+..+.+... .-.+....|+-.++.+++-....++.|.++|-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 377888888999999999999999999999999988876521 111122234333364555566788899999974
No 428
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.43 E-value=0.2 Score=40.73 Aligned_cols=96 Identities=15% Similarity=0.244 Sum_probs=63.2
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
++|.-+++.+++ .....+.+.+||+.+.. .++++. +- ....++..|++..+ .++.|...|.+
T Consensus 80 m~wDkegdvlav-lAek~~piylwd~n~ey-tqqLE~-------gg-----~~s~sll~wsKg~~----el~ig~~~gn~ 141 (615)
T KOG2247|consen 80 MAWDKEGDVLAV-LAEKTGPIYLWDVNSEY-TQQLES-------GG-----TSSKSLLAWSKGTP----ELVIGNNAGNI 141 (615)
T ss_pred hhhccccchhhh-hhhcCCCeeechhhhhh-HHHHhc-------cC-----cchHHHHhhccCCc----cccccccccce
Confidence 345555665554 35567899999998543 233332 10 01122223887543 88889999999
Q ss_pred EEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+++..+ .+.+...-.|...+++++|.+.+..+.
T Consensus 142 viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 142 VIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred EEEeccc-hhhhhhhcccccceeEEEecccceeee
Confidence 9999988 454444444888999999999887764
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.38 E-value=2.3 Score=38.76 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=43.9
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe---ecCCCcceEEEEEeeCCCCCEEEE
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVIS 81 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s 81 (270)
-...++|++|+|.|..++.|-..|++.-|... .+....+. ... ...|.+|.|.. ...++++
T Consensus 197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e-~yrvl~v~Wl~--t~eflvv 260 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEE-NYRVLSVTWLS--TQEFLVV 260 (1405)
T ss_pred cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCC-CcceeEEEEec--ceeEEEE
Confidence 34678999999999999999999999988754 33333332 122 26699999988 6455553
No 430
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.36 E-value=12 Score=30.21 Aligned_cols=55 Identities=13% Similarity=-0.072 Sum_probs=27.6
Q ss_pred EEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245 24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 24 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
..++|+.+.++-......|+--|+.+.+....+.... ..+-...|....++..++
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~--~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD--DWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T--TEEEEEEEEE-TTSSEEE
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc--ccccccceeeCCCccEEE
Confidence 4455666665444444567777888877666665554 445456665422444443
No 431
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.12 E-value=14 Score=30.73 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=37.6
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce--eEEEe---ecCCCcceEEEEEee
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSW---VHSAAHGIVSVATGP 72 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~---~~~~~~~v~~~~~~~ 72 (270)
.-..-+.|+|.|+|++|++--..|.|++++..++.. +..+. ....+.....|+++|
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 345678999999998887765469999998655432 21111 111236689999998
No 432
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.72 E-value=14 Score=30.34 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=39.3
Q ss_pred CCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCC--CCCEEEEEeCCCcEEEEEcc
Q 024245 30 KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~d~~i~~wd~~ 94 (270)
...++.||.+|.++||+...+. ....+-...-+.+|..++.-++. .....++.-.-+.+.+|.+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~ 105 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS 105 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Confidence 3589999999999999986533 11111111222678888764420 12233334556788888884
No 433
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.70 E-value=1.8 Score=20.42 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=20.4
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEE
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSS 56 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~ 56 (270)
.++.++.+|.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888999999999888876543
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.21 E-value=20 Score=31.53 Aligned_cols=167 Identities=9% Similarity=0.027 Sum_probs=78.3
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE----eecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
+..+.-....+-.|.|+.+.. |+.-..||++.||++- |+.+... .... ..|..+.+.. +|=.+++. +|
T Consensus 76 L~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~--~~I~ec~~f~--~GVavlt~--~g 147 (829)
T KOG2280|consen 76 LGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIESNSVGFESQM--SDIVECRFFH--NGVAVLTV--SG 147 (829)
T ss_pred hHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecc-hhhhccccccccccc--CceeEEEEec--CceEEEec--CC
Confidence 333333345888999998765 5556889999999986 3333331 1111 2255555555 44444443 33
Q ss_pred cEE-EEEccCCccCCCCccceecccceEEEEeeccCCccc---eecC-CCCceEEEeccCceeeecc-CCCCC---eEec
Q 024245 87 TVK-CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN---AKQA-NEPKDCYEREVGETVDTDS-LCDSK---DDVP 157 (270)
Q Consensus 87 ~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~---~~~s 157 (270)
.+. +-+.+...... ....+.......++++....... .... .-...+............+ ..+.. +.+|
T Consensus 148 ~v~~i~~~~~~~~~~--~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS 225 (829)
T KOG2280|consen 148 QVILINGVEEPKLRK--MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVS 225 (829)
T ss_pred cEEEEcCCCcchhhh--CCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEc
Confidence 333 33333322111 11112222221222222211111 0000 0000111111111111111 12233 8899
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 189 (270)
|+.+++.+.+. .|.|.+-+....+....+.
T Consensus 226 ~n~~~laLyt~--~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 226 PNRRFLALYTE--TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCcceEEEEec--CCcEEEEecchhhhhhccC
Confidence 99988877654 5888888888777666665
No 435
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.96 E-value=7.2 Score=26.11 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=48.4
Q ss_pred EEEEEeCCCCEEEEecCCCcEEEEeCCCC--------ceeEEEeecCCCcceEEEEEeeC---CCCCEEEEEeCCCcEEE
Q 024245 22 TDVCFHQTKPILFAGTTGGELRIWDTVQH--------RTVSSSWVHSAAHGIVSVATGPS---IGLNKVISQGRDGTVKC 90 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~d~~i~~ 90 (270)
..-.|......|+.++.-|.|.|++.... ..+..+... ..|++|+--+. .+...|+.|+.. .+..
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliGt~t-~lla 77 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIGTQT-SLLA 77 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEeccc-eEEE
Confidence 34456666668888889999999987643 344555544 44777765543 234567776654 6889
Q ss_pred EEccCCc
Q 024245 91 WDIENGG 97 (270)
Q Consensus 91 wd~~~~~ 97 (270)
||+....
T Consensus 78 YDV~~N~ 84 (136)
T PF14781_consen 78 YDVENNS 84 (136)
T ss_pred EEcccCc
Confidence 9998774
No 436
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.88 E-value=5.9 Score=34.69 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=55.6
Q ss_pred cccccccccccEEEEEEe--CCCCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCC-CCC---EEEEE
Q 024245 10 PVAVLRGHRASVTDVCFH--QTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSI-GLN---KVISQ 82 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s--~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~---~l~s~ 82 (270)
|...++ -...+++++++ ...++||+++....|.||-.... +.......+.....|-+|+|.+.. ++. .|+++
T Consensus 156 P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~ 234 (717)
T PF08728_consen 156 PFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVAT 234 (717)
T ss_pred CCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEE
Confidence 444444 34589999999 78889999999888988866442 111111111222559999998832 112 67788
Q ss_pred eCCCcEEEEEc
Q 024245 83 GRDGTVKCWDI 93 (270)
Q Consensus 83 ~~d~~i~~wd~ 93 (270)
+-.|.+.+|++
T Consensus 235 dI~G~v~~~~I 245 (717)
T PF08728_consen 235 DISGEVWTFKI 245 (717)
T ss_pred eccCcEEEEEE
Confidence 99999999888
No 437
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.62 E-value=22 Score=31.33 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=36.8
Q ss_pred cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
.|+|+++. |+.+..+.-.. ..+..+.|+. + ..|+....+|++++|++-...
T Consensus 65 ~I~If~~s-G~lL~~~~w~~--~~lI~mgWs~--~-eeLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKH--GELIGMGWSD--D-EELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eEEEEecc-ccchHHHHhcC--CCeeeecccC--C-ceEEEEeccceEEEeecchhh
Confidence 47777765 55555443333 3588999998 6 778888999999999986543
No 438
>PHA03098 kelch-like protein; Provisional
Probab=86.38 E-value=20 Score=30.64 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=35.8
Q ss_pred CCCEEEEecCCC------cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEccCCc
Q 024245 29 TKPILFAGTTGG------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGG 97 (270)
Q Consensus 29 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~ 97 (270)
++.+++.|+.++ .+..||..+.+....-......... +++. - ++...+.|+.+ ..+..||..+++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-F--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-E--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 455666666542 5778888776553321111111112 2222 2 44667777765 357788888776
Q ss_pred cCC
Q 024245 98 LSS 100 (270)
Q Consensus 98 ~~~ 100 (270)
...
T Consensus 370 W~~ 372 (534)
T PHA03098 370 WRE 372 (534)
T ss_pred eee
Confidence 543
No 439
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.38 E-value=7.5 Score=28.40 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=35.5
Q ss_pred eEecCCC-CeEEEEecCCCceEEEEeCCC--cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245 154 DDVPAEG-PKYMAVAGEQLSEVEIWDLNT--AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229 (270)
Q Consensus 154 ~~~s~~~-~~~~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~ 229 (270)
.++...| +.++++++ ...|.+|++.. .+.+.+|.. -+.+..+. ++.. |. ||+|--+
T Consensus 21 ~~~c~~g~d~Lfva~~--g~~Vev~~l~~~~~~~~~~F~T-------------v~~V~~l~-y~~~---GD-YlvTlE~ 79 (215)
T PF14761_consen 21 TAVCCGGPDALFVAAS--GCKVEVYDLEQEECPLLCTFST-------------VGRVLQLV-YSEA---GD-YLVTLEE 79 (215)
T ss_pred ceeeccCCceEEEEcC--CCEEEEEEcccCCCceeEEEcc-------------hhheeEEE-eccc---cc-eEEEEEe
Confidence 3444445 55666444 37899999883 345666662 35677887 8874 44 8888743
No 440
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=85.58 E-value=4.6 Score=24.71 Aligned_cols=30 Identities=0% Similarity=0.071 Sum_probs=22.9
Q ss_pred CCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (270)
Q Consensus 151 ~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~ 181 (270)
...+.++|++++++++ ....+.|++|....
T Consensus 56 aNGI~~s~~~k~lyVa-~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVA-SSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEE-eccCCeEEEEEecC
Confidence 3338899999988875 45579999998653
No 441
>PRK10115 protease 2; Provisional
Probab=85.48 E-value=16 Score=32.39 Aligned_cols=96 Identities=5% Similarity=-0.025 Sum_probs=50.1
Q ss_pred eEecCCCCeEEEEe---cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245 154 DDVPAEGPKYMAVA---GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (270)
Q Consensus 154 ~~~s~~~~~~~~~~---~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d 230 (270)
..++|+|++++++. |++...|++.|+.+++.+.... ......+. |.++ ++.++++...+
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--------------~~~~~~~~-w~~D---~~~~~y~~~~~ 193 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--------------DNVEPSFV-WAND---SWTFYYVRKHP 193 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--------------cCcceEEE-EeeC---CCEEEEEEecC
Confidence 56899998665532 3333458889998776432221 11113355 9885 33244444322
Q ss_pred -----CcEEEEEcCCCC-cceeeeeccCCCee-EEEeecCCCce
Q 024245 231 -----GSILVWDIRNPG-IPLTAMKVHLEPGL-ECSMWRNPITM 267 (270)
Q Consensus 231 -----g~i~vwd~~~~~-~~~~~~~~~~~~v~-~~~~s~~g~~l 267 (270)
..|+.+++.++. +....+........ .+..+.|++++
T Consensus 194 ~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l 237 (686)
T PRK10115 194 VTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYV 237 (686)
T ss_pred CCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEE
Confidence 368888988842 22333332222222 33334466654
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.12 E-value=3.2 Score=34.43 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=45.3
Q ss_pred CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
.++|.||..|.|++||--.-+....+++-+ ..|..+..+. +|.++++.+.. .+.+-|+.
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG--~aIk~idvta--~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLG--DAIKHIDVTA--NGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccc--cceeeeEeec--CCcEEEEeecc-eEEEEecc
Confidence 389999999999999965444445566666 5599999998 98988766654 67777765
No 443
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.00 E-value=3.6 Score=35.94 Aligned_cols=69 Identities=9% Similarity=0.121 Sum_probs=46.7
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
...++++.-+|.|.-+++++.||+|++|+....+..+..... .+-..+.|.. .-|++...|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tn----hgl~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTN----HGLVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeec----cceEEEeccchhheeec
Confidence 356788888999999999999999999998765443333222 2234555654 34666666766666643
No 444
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.53 E-value=3.6 Score=20.43 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.2
Q ss_pred EEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 223 NVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
.+..++.||.|+-.|.++ ++.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~T-G~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKT-GKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTT-TSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCC-CCEEEeeeC
Confidence 456669999999999999 888877763
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.96 E-value=14 Score=26.99 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=34.3
Q ss_pred CEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 31 PILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 31 ~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
..|+.+...+.|.+|++... +....|..- +.|..+.++. .|++|+|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~--~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSE--AGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEecc--ccceEEEEEe
Confidence 34444455678999999833 444455433 6699999999 8999998644
No 446
>PHA02790 Kelch-like protein; Provisional
Probab=83.76 E-value=25 Score=29.62 Aligned_cols=67 Identities=9% Similarity=0.006 Sum_probs=35.3
Q ss_pred CCCEEEEecCCC-----cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC--CcEEEEEccCCccC
Q 024245 29 TKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--GTVKCWDIENGGLS 99 (270)
Q Consensus 29 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~ 99 (270)
++.+++.|+.++ .+..||..+++....-......... +++ .- ++...+.|+.+ ..+..||..+++..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~--~~~iYviGG~~~~~sve~ydp~~n~W~ 344 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA--NNKLYVVGGLPNPTSVERWFHGDAAWV 344 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE--CCEEEEECCcCCCCceEEEECCCCeEE
Confidence 455667777543 4677888776544322211111111 222 23 54666677653 35788888766543
No 447
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=83.28 E-value=31 Score=30.23 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=52.6
Q ss_pred CCCccccccc-ccccEEEEEEeCC---CCEEEEecCCCc-EEEEeCCCC-----------ceeE--EEeecCCCcceEEE
Q 024245 7 PPDPVAVLRG-HRASVTDVCFHQT---KPILFAGTTGGE-LRIWDTVQH-----------RTVS--SSWVHSAAHGIVSV 68 (270)
Q Consensus 7 ~~~~~~~~~~-h~~~v~~~~~s~~---~~~l~s~~~dg~-i~vwd~~~~-----------~~~~--~~~~~~~~~~v~~~ 68 (270)
.|+++..+.- .+..|.||..-.. .++.+.|-.++. -++-.+..+ +... .+.. . +.|.++
T Consensus 59 TPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl-~--~kvv~I 135 (670)
T PF10395_consen 59 TPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKL-D--DKVVGI 135 (670)
T ss_pred CcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEc-c--cceEEE
Confidence 3477766653 4667888887542 234445534433 333333222 1111 2222 2 569999
Q ss_pred EEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 69 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
.|.+ +++.+++...+|.|.+||...+
T Consensus 136 k~~~--~~~~I~vvl~nG~i~~~d~~~~ 161 (670)
T PF10395_consen 136 KFSS--DGKIIYVVLENGSIQIYDFSEN 161 (670)
T ss_pred EEec--CCCEEEEEEcCCcEEEEecccc
Confidence 9998 8899999999999999999444
No 448
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=82.97 E-value=32 Score=30.16 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=28.7
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCC
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQ 49 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~ 49 (270)
.+.|-.+.|.++++.++..-.+|.|.+||...
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~ 160 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSE 160 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccc
Confidence 57889999999999999999999999999943
No 449
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=82.66 E-value=3.5 Score=18.88 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.4
Q ss_pred ceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 64 GIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 64 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
.|.+++..+ .+++.+...+.+|+|.
T Consensus 3 ~i~aia~g~----~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD----SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC----CEEEEEeCCCeEEecC
Confidence 478888876 7898888889999873
No 450
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=81.02 E-value=42 Score=30.27 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=47.6
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCc------ceEEEEEee--------------CCCCCEEEEEeCCCcEE
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH------GIVSVATGP--------------SIGLNKVISQGRDGTVK 89 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~v~~~~~~~--------------~~~~~~l~s~~~d~~i~ 89 (270)
+..|+.++.++.|.-.|..+|+.+..+....... ....+.+.. ...+.+++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4577778888999999999999888776433211 012233321 11235788888899999
Q ss_pred EEEccCCccC
Q 024245 90 CWDIENGGLS 99 (270)
Q Consensus 90 ~wd~~~~~~~ 99 (270)
-.|.++++..
T Consensus 274 ALDA~TGk~~ 283 (764)
T TIGR03074 274 ALDADTGKLC 283 (764)
T ss_pred EEECCCCCEE
Confidence 9999988754
No 451
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=80.23 E-value=29 Score=27.99 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=31.3
Q ss_pred eeeeeecCCCCCCCceEEEEecC------------------CCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 207 CMAVQAYLPSKSQGFVNVLAGYE------------------DGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~~~~------------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
...+. |.| ||.+|+..|+. .|.|.-+|... ++ +..+..--...+.++|+|+|.++
T Consensus 126 ~~~l~-~gp---DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg-~~-~e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 126 LNSLA-WGP---DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG-GK-LRVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred ccCce-ECC---CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC-Ce-EEEEecCcCCCccceECCCCCEE
Confidence 44565 888 56656655632 13455555543 22 33333223456789999998764
No 452
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=80.09 E-value=54 Score=30.90 Aligned_cols=27 Identities=4% Similarity=0.203 Sum_probs=21.1
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCC
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLN 180 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~ 180 (270)
+.|--+|..+-++++..+++|++|-..
T Consensus 1187 ~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1187 TEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 667778887777778889999998543
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=79.71 E-value=44 Score=29.67 Aligned_cols=74 Identities=7% Similarity=0.069 Sum_probs=48.3
Q ss_pred ccEEEEEEeC--CCCEEEEecCCCcEEEEeCCC-------C----ce------e-EEEeecCCCcceEEEEEe--eCCCC
Q 024245 19 ASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQ-------H----RT------V-SSSWVHSAAHGIVSVATG--PSIGL 76 (270)
Q Consensus 19 ~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~-------~----~~------~-~~~~~~~~~~~v~~~~~~--~~~~~ 76 (270)
..|+-|.... +.+.|+.+..||.|.+|.+++ . +. + .-+....+ ..+++++++ . ..
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~-~SaWGLdIh~~~--~~ 177 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG-ASAWGLDIHDYK--KS 177 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC-CceeEEEEEecC--cc
Confidence 3466665554 556899999999999997742 0 00 0 01222222 568999998 5 66
Q ss_pred CEEEEEeCCCcEEEEEccC
Q 024245 77 NKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 77 ~~l~s~~~d~~i~~wd~~~ 95 (270)
++||+++....|.||-...
T Consensus 178 rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred eEEEEecCCceEEEEEEec
Confidence 7788888788888876554
No 454
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.24 E-value=12 Score=23.03 Aligned_cols=41 Identities=20% Similarity=0.016 Sum_probs=27.1
Q ss_pred cCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 37 TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 37 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
..+|.+..||..+++..-.+.+- .--+.|+.++ ++..++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L---~fpNGVals~--d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL---YFPNGVALSP--DESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE---SSEEEEEE-T--TSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC---CccCeEEEcC--CCCEEEEE
Confidence 34688999999887765555543 3368999999 88876654
No 455
>PHA03098 kelch-like protein; Provisional
Probab=78.42 E-value=42 Score=28.71 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCCEEEEecCC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC------CcEEEEEccCCc
Q 024245 29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENGG 97 (270)
Q Consensus 29 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~ 97 (270)
++.+.+.|+.+ ..+..||..+++....-....... -.+++. - ++...+.|+.+ ..+..||+.+++
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~-~~~~~~-~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY-NPCVVN-V--NNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc-cceEEE-E--CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 45666677765 347778877654432211111101 112222 2 44666666632 358889998876
Q ss_pred cCC
Q 024245 98 LSS 100 (270)
Q Consensus 98 ~~~ 100 (270)
...
T Consensus 418 W~~ 420 (534)
T PHA03098 418 WSK 420 (534)
T ss_pred eee
Confidence 543
No 456
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=77.14 E-value=26 Score=31.30 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=30.8
Q ss_pred EEEEecCCCcEEEEeCCCCc---eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 32 ILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
.+..|+.++.+.++.-..+. .......... ..+.++.+++ .-+..|.-||++-.+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~-~~v~~l~~ss----~Slgagl~dgt~a~y 606 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEH-ESVKLLLFSS----GSLGAGLIDGTLAVY 606 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCch-hhhhhhhccc----cccccCccCCccccc
Confidence 46677888888888765222 2222221111 4567777766 455556666666554
No 457
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=75.55 E-value=33 Score=26.06 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=47.4
Q ss_pred ccccEEEEEEeC----C---CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC--CCCEEEEEeCCCc
Q 024245 17 HRASVTDVCFHQ----T---KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGT 87 (270)
Q Consensus 17 h~~~v~~~~~s~----~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~d~~ 87 (270)
+...|+||+--. + -..|+.|.++|.|.|.|.+.-..+..+.... -++ .+..+-.. -.-+|+.++.||.
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lps--vPv-~i~~~G~~devdyRI~Va~Rdg~ 251 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPS--VPV-FISVSGQYDEVDYRIVVACRDGK 251 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCC--Cce-EEEEEeeeeccceEEEEEeCCCE
Confidence 356788887543 1 1379999999999999988777776666554 223 23222211 2356888899998
Q ss_pred EEEE
Q 024245 88 VKCW 91 (270)
Q Consensus 88 i~~w 91 (270)
|.+-
T Consensus 252 iy~i 255 (257)
T PF14779_consen 252 IYTI 255 (257)
T ss_pred EEEE
Confidence 7653
No 458
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=75.19 E-value=29 Score=27.14 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=40.0
Q ss_pred CCCEEEEecCCCcEEEEeCCC--CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEEEEEccC
Q 024245 29 TKPILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN 95 (270)
Q Consensus 29 ~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~ 95 (270)
++++|+.|.++| +.+-++.. ++..+.+. . ..|.++...+ .-+.|++-+ ....++++++..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~--~--~~v~q~~v~~--~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIG--R--RSVTQIWVLE--ENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEecC--c--CceEEEEEEh--hhCEEEEEeCCcceEEEEEHHH
Confidence 346899999999 56666654 33444332 2 4599999998 656666544 344599999843
No 459
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=74.25 E-value=48 Score=27.35 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=21.0
Q ss_pred eeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+.++. ..+.. + .|++-..+|.|.+|++..
T Consensus 192 I~~v~-~d~~r---~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVA-VDPSR---R-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEE-EETTT---T-EEEEEESSE-EEEEEE-S
T ss_pred eeeEE-ecCCc---C-EEEEEeCCCcEEEEEEeC
Confidence 66665 66542 3 899999999999999985
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.35 E-value=60 Score=27.60 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=52.3
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeC---------CCCceeEEEe---------ecCCCcceEEEEEeeCC-CCCEE
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDT---------VQHRTVSSSW---------VHSAAHGIVSVATGPSI-GLNKV 79 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~---------~~~~~~~~~~---------~~~~~~~v~~~~~~~~~-~~~~l 79 (270)
-.|..+..++.|..++-.+.+|.+.++=. +.++.+-... .....-.+..++|+|.. ....|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 46788899999999999999995555431 2232221111 11111347788999942 02678
Q ss_pred EEEeCCCcEEEEEccCCcc
Q 024245 80 ISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 80 ~s~~~d~~i~~wd~~~~~~ 98 (270)
+.-+.|..||+||+.....
T Consensus 184 ~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEecCcEEEEEecCCcch
Confidence 8888899999999987643
No 461
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=71.96 E-value=83 Score=29.04 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=46.8
Q ss_pred cccEEEEEEeCC--C----CEEEEecCCCcEEEEeC-CCCceeEE--EeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 18 RASVTDVCFHQT--K----PILFAGTTGGELRIWDT-VQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 18 ~~~v~~~~~s~~--~----~~l~s~~~dg~i~vwd~-~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+..|.|+.++|- + ++++.|..+..+.+--. .+...+.. +.+..-+..|.-..+-. +..+|.++..||.+
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~--d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG--DIHYLLVALGDGAL 607 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeec--cceEEEEEcCCceE
Confidence 568999999983 2 27888887766555443 33332222 22222223355555555 57899999999998
Q ss_pred EEEEcc
Q 024245 89 KCWDIE 94 (270)
Q Consensus 89 ~~wd~~ 94 (270)
..|.+.
T Consensus 608 ~~fv~d 613 (1096)
T KOG1897|consen 608 LYFVLD 613 (1096)
T ss_pred EEEEEE
Confidence 876554
No 462
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.87 E-value=45 Score=25.93 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=26.5
Q ss_pred cceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 100 (270)
..|.++.|+| +.+.|++......-.||=-..|..++
T Consensus 86 ~nvS~LTynp--~~rtLFav~n~p~~iVElt~~Gdlir 121 (316)
T COG3204 86 ANVSSLTYNP--DTRTLFAVTNKPAAIVELTKEGDLIR 121 (316)
T ss_pred ccccceeeCC--CcceEEEecCCCceEEEEecCCceEE
Confidence 4499999999 88888877776666666555665544
No 463
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=71.78 E-value=8.7 Score=19.18 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=15.7
Q ss_pred CCCEEEEecCCCcEEEEeCCC
Q 024245 29 TKPILFAGTTGGELRIWDTVQ 49 (270)
Q Consensus 29 ~~~~l~s~~~dg~i~vwd~~~ 49 (270)
.+..++.++.||.|..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 355888889999999998763
No 464
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=71.60 E-value=8.6 Score=17.53 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=14.3
Q ss_pred EEEEEEeCCCCEEEEecCCCcEEE
Q 024245 21 VTDVCFHQTKPILFAGTTGGELRI 44 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~i~v 44 (270)
..+++..++|.++++=+....|++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEE
Confidence 356666666666666555555554
No 465
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=71.56 E-value=80 Score=28.67 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=55.4
Q ss_pred Ccccccccc---cccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCc-----eeEEE---eecC-----CCcceEEEEEe
Q 024245 9 DPVAVLRGH---RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR-----TVSSS---WVHS-----AAHGIVSVATG 71 (270)
Q Consensus 9 ~~~~~~~~h---~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~---~~~~-----~~~~v~~~~~~ 71 (270)
.++..+..+ ..+...++|+| +...||.....|.-.||++.... ..... .++- ..+.-..+.|.
T Consensus 133 ~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~ 212 (765)
T PF10214_consen 133 NPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV 212 (765)
T ss_pred ceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec
Confidence 445555432 24678999999 66699999999999999992211 11111 0110 00223478888
Q ss_pred eCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 72 PSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 72 ~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
+ +-+.|+.++.. .+.++|+++...
T Consensus 213 ~--~~~~lLv~~r~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 213 S--DSNRLLVCNRS-KLMLIDFESNWQ 236 (765)
T ss_pred C--CCCEEEEEcCC-ceEEEECCCCCc
Confidence 7 66777776654 688999988754
No 466
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=70.83 E-value=55 Score=26.48 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=36.4
Q ss_pred ccEEEEEEeCCCCEEEEec-----------CCC-cEEEEeCCC--Cc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 19 ASVTDVCFHQTKPILFAGT-----------TGG-ELRIWDTVQ--HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.... .....+++.+ ++ +++ +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l--~~p~Gi~~~~--~G-lyV-~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL--SMVTGLAVAV--GG-VYV-A 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC--CCccceeEec--CC-EEE-e
Confidence 3567899999999777642 223 677776433 32 223333222 3468899988 86 444 4
Q ss_pred eCCC
Q 024245 83 GRDG 86 (270)
Q Consensus 83 ~~d~ 86 (270)
+...
T Consensus 88 ~~~~ 91 (367)
T TIGR02604 88 TPPD 91 (367)
T ss_pred CCCe
Confidence 4443
No 467
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=69.96 E-value=54 Score=26.03 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=55.4
Q ss_pred eEecCCCCeEEEEecCCC------ceEEEEeCCCcceeeeeccCcCCCCCC---cccCCCceeeeeeecCCCCCCCceEE
Q 024245 154 DDVPAEGPKYMAVAGEQL------SEVEIWDLNTAERCTRLHQNSCGGSPN---FSSKGRGMCMAVQAYLPSKSQGFVNV 224 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~---h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (270)
+++.++|..++ +...+ ..|..++.. |+.+..+..+....... .....+.-.-+++ ++|+ |+ .|
T Consensus 90 i~~~~~g~~~i--s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la-~~~d---G~-~l 161 (326)
T PF13449_consen 90 IAVPPDGSFWI--SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA-VSPD---GR-TL 161 (326)
T ss_pred eEEecCCCEEE--EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE-ECCC---CC-EE
Confidence 66767775443 45556 778888877 77766663221100000 0111233445566 8884 55 45
Q ss_pred EEecC-----CC--c-------EEE--EEcCCCCcceeee----ec-----cCCCeeEEEeecCCCcee
Q 024245 225 LAGYE-----DG--S-------ILV--WDIRNPGIPLTAM----KV-----HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 225 ~~~~~-----dg--~-------i~v--wd~~~~~~~~~~~----~~-----~~~~v~~~~~s~~g~~ls 268 (270)
+++.+ |+ . +++ ||..+.+++...+ .. ....|..+.+-+++++|.
T Consensus 162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 44432 22 1 444 4544423232222 21 245788899999987764
No 468
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=69.35 E-value=1.3 Score=36.23 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=68.5
Q ss_pred EEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceee
Q 024245 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD 145 (270)
Q Consensus 66 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (270)
....|.| ++.-++.++.+..+..||-....... .......-...+...+..........+...+|++.+.....
T Consensus 38 i~~~w~~--e~~nlavaca~tiv~~YD~agq~~le----~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 38 IIHRWRP--EGHNLAVACANTIVIYYDKAGQVILE----LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred ceeeEec--CCCceehhhhhhHHHhhhhhcceecc----cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 4556777 65668888888888888866543221 00111111112222333333344445667788887776655
Q ss_pred eccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeee
Q 024245 146 TDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (270)
Q Consensus 146 ~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 188 (270)
..+.+... ..|++....+++ |...|.+.|++.++.+.+...
T Consensus 112 LE~gg~~s~sll~wsKg~~el~i--g~~~gn~viynhgtsR~iiv~ 155 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVI--GNNAGNIVIYNHGTSRRIIVM 155 (615)
T ss_pred HhccCcchHHHHhhccCCccccc--cccccceEEEeccchhhhhhh
Confidence 55555444 788888876664 667899999998776654433
No 469
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=69.20 E-value=48 Score=25.16 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=41.4
Q ss_pred cEEEEEEeCCCCEEEEec---CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 20 SVTDVCFHQTKPILFAGT---TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
.+...+.++++..+|... ....++++.. +.....+. .. ..+..-.|.+ ++...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g--~~l~~PS~d~--~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TG--GSLTRPSWDP--DGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cC--CccccccccC--CCCEEEEEcCCCceEEEE
Confidence 788999999998776655 2334555543 33332222 11 3488889999 866666666566666664
No 470
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.65 E-value=44 Score=24.58 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=37.3
Q ss_pred CCCEEEEecCC--CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEE-EeCCCcEEEEEccCCccCC
Q 024245 29 TKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 29 ~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~ 100 (270)
+|.++.+.+.- ..|++||+.+++.+....... ..+..=-... -++.+.. .=.+|.-..+|.++-++..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~--~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITK--LGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceee--ccceEEEEEeccceeEEEChHHhhhhc
Confidence 45666666543 369999999988776544332 1122222222 2233332 2346666778877765544
No 471
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=66.75 E-value=1.1e+02 Score=28.53 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=47.1
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
.++.|...++++.. ...+++||+...+++++.+. .+ ....+..++ +.- . .++.|...-.|
T Consensus 939 ~Ai~~f~~~~Lagv---G~~l~~YdlG~K~lLRk~e~-------k~---~p~~Is~iq-t~~-----~-RI~VgD~qeSV 998 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGV---GRFLRLYDLGKKKLLRKCEL-------KF---IPNRISSIQ-TYG-----A-RIVVGDIQESV 998 (1205)
T ss_pred eEEeccCCEEEEec---ccEEEEeeCChHHHHhhhhh-------cc---CceEEEEEe-ecc-----e-EEEEeeccceE
Confidence 67788888777543 37899999998887777663 12 344566666 542 2 67777666666
Q ss_pred EEEEcCCCCcceeee
Q 024245 234 LVWDIRNPGIPLTAM 248 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~ 248 (270)
.++..+.....+..+
T Consensus 999 ~~~~y~~~~n~l~~f 1013 (1205)
T KOG1898|consen 999 HFVRYRREDNQLIVF 1013 (1205)
T ss_pred EEEEEecCCCeEEEE
Confidence 655554433333333
No 472
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=66.31 E-value=59 Score=25.14 Aligned_cols=198 Identities=10% Similarity=0.017 Sum_probs=98.5
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
..-..++-.|||..-+++...+.|---|..+|+....--+.. ..-..|..-| +|...++-+.. -|.-.|-++.+.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G--a~Phgiv~gp--dg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG--ASPHGIVVGP--DGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC--CCCceEEECC--CCCeeEecCcc-eeEEecCcccce
Confidence 345667778888888888888888888888887665443433 4467788888 87777664443 455566655543
Q ss_pred CCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCce-eeeccCCCCC--eEecCCCCeEEEEecCCCceEE
Q 024245 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET-VDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVE 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~ 175 (270)
.+-++- .+..........++......+....+.-...|..+... +....++... ++..|+|+..++ .-.+..|.
T Consensus 137 t~f~lp-~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwya--slagnaia 213 (353)
T COG4257 137 TRFPLP-LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYA--SLAGNAIA 213 (353)
T ss_pred EEeecc-cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEE--eccccceE
Confidence 321111 11111122222222222222222211111122221111 1111122222 899999986553 33456777
Q ss_pred EEeCCCcceeeeeccCcCCCCCC-cccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 176 IWDLNTAERCTRLHQNSCGGSPN-FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
..|..++. -..+..+. + |.. ...+ |+- +.|+ .-++-...+.+..+|-.+
T Consensus 214 ridp~~~~-aev~p~P~-----~~~~g-----sRri--wsd--pig~-~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 214 RIDPFAGH-AEVVPQPN-----ALKAG-----SRRI--WSD--PIGR-AWITTWGTGSLHRFDPSV 263 (353)
T ss_pred EcccccCC-cceecCCC-----ccccc-----cccc--ccC--ccCc-EEEeccCCceeeEeCccc
Confidence 77777663 22333110 1 111 1111 332 1455 566666667777777654
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.92 E-value=24 Score=33.17 Aligned_cols=70 Identities=23% Similarity=0.353 Sum_probs=0.0
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCC-------------------------CceeEEEeecCCCcceEEEEEeeCC
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------------------------HRTVSSSWVHSAAHGIVSVATGPSI 74 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~~~v~~~~~~~~~ 74 (270)
.|+|+....+|+.+++|-.+ .+|.+.- ....+....+. ++|..+++..
T Consensus 180 ~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~--dpI~qi~ID~-- 252 (1311)
T KOG1900|consen 180 SVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK--DPIRQITIDN-- 252 (1311)
T ss_pred eEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC--CcceeeEecc--
Q ss_pred CCCEEEEEeCCCcEEEEEccCC
Q 024245 75 GLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 75 ~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
..+.+.+-++.++|.+||+...
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ccceeeeeccCceEEEEEccCC
No 474
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=65.20 E-value=46 Score=26.38 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=42.4
Q ss_pred cEEEEEEeCCCCEEEEecCC------CcEEEEeCCCCceeEEEe-------------ecCCCcceEEEEEeeCCCCCEEE
Q 024245 20 SVTDVCFHQTKPILFAGTTG------GELRIWDTVQHRTVSSSW-------------VHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
...+|++.++|.++++.=.+ ..|+.++.. |+.+..+. .........+|+++| +|+.|+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLF 162 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC--CCCEEE
Confidence 44578887788888876666 778888876 65544431 112236689999999 988776
Q ss_pred EEeC
Q 024245 81 SQGR 84 (270)
Q Consensus 81 s~~~ 84 (270)
++.+
T Consensus 163 ~~~E 166 (326)
T PF13449_consen 163 AAME 166 (326)
T ss_pred EEEC
Confidence 6544
No 475
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=64.82 E-value=64 Score=25.03 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=46.2
Q ss_pred ccccEEEEEEeCCCCEEEEec------CCCcEEEEeCCCCceeEEEee-c--CCCcceEEEEEeeCCCCCEEEEEe-CCC
Q 024245 17 HRASVTDVCFHQTKPILFAGT------TGGELRIWDTVQHRTVSSSWV-H--SAAHGIVSVATGPSIGLNKVISQG-RDG 86 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~l~s~~-~d~ 86 (270)
-.+.|++|.|..+.++++.|. ....+..||..+.... .+.. . .-.++|..+.+...+..+..+.|. .++
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g 113 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG 113 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence 457899999997777777764 4567889998876443 2322 1 112668888886532334454443 333
Q ss_pred --cEEEEEc
Q 024245 87 --TVKCWDI 93 (270)
Q Consensus 87 --~i~~wd~ 93 (270)
.|..||-
T Consensus 114 ~~~l~~~dG 122 (281)
T PF12768_consen 114 STFLMKYDG 122 (281)
T ss_pred CceEEEEcC
Confidence 4555543
No 476
>PHA02790 Kelch-like protein; Provisional
Probab=64.76 E-value=87 Score=26.52 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=35.8
Q ss_pred CCCEEEEecCC--CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC---cEEEEEccCCccCC
Q 024245 29 TKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG---TVKCWDIENGGLSS 100 (270)
Q Consensus 29 ~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~ 100 (270)
++.+.+.|+.+ ..+..||..+++....-......... +++. - ++...+.|+.++ .+..||.++++...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~-~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~ 390 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVAS-I--NNVIYVIGGHSETDTTTEYLLPNHDQWQF 390 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEE-E--CCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence 56666777653 35778887655433221111110111 2222 2 446667777553 47789988776543
No 477
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=63.17 E-value=16 Score=22.56 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=24.8
Q ss_pred ecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 227 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+..+|.+.-||..+ ++....+.+ -.-.+.|++++|+..+
T Consensus 33 ~~~~GRll~ydp~t-~~~~vl~~~-L~fpNGVals~d~~~v 71 (89)
T PF03088_consen 33 GRPTGRLLRYDPST-KETTVLLDG-LYFPNGVALSPDESFV 71 (89)
T ss_dssp T---EEEEEEETTT-TEEEEEEEE-ESSEEEEEE-TTSSEE
T ss_pred CCCCcCEEEEECCC-CeEEEehhC-CCccCeEEEcCCCCEE
Confidence 44577888999987 554333443 3568999999999854
No 478
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=63.00 E-value=1.2e+02 Score=27.43 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=49.8
Q ss_pred CcccccccccccEEEEEEe----CCCC--EEEEecCCCcEE-EEeCCCCc-----eeEEEeecCCCcceEEEEEeeCCCC
Q 024245 9 DPVAVLRGHRASVTDVCFH----QTKP--ILFAGTTGGELR-IWDTVQHR-----TVSSSWVHSAAHGIVSVATGPSIGL 76 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s----~~~~--~l~s~~~dg~i~-vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~ 76 (270)
+|+.+..+ ....+.++.. .++. .|+.|+.+|+|. +-.+.+.. .+.+++.-....+|..|..++ ..
T Consensus 399 ~P~l~~~~-~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~--~~ 475 (737)
T KOG3611|consen 399 RPLLVKTG-DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSS--KR 475 (737)
T ss_pred CceEEecc-cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecc--cC
Confidence 35555554 5666777766 4444 577899998754 33332211 345555444337799999999 76
Q ss_pred CEEEEEeCCCcEEE
Q 024245 77 NKVISQGRDGTVKC 90 (270)
Q Consensus 77 ~~l~s~~~d~~i~~ 90 (270)
+.|+.|+..+.++|
T Consensus 476 ~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 476 GSLYVGSRSGVVQV 489 (737)
T ss_pred CeEEEEccCcEEEe
Confidence 78888888875443
No 479
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=62.15 E-value=25 Score=19.39 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=15.9
Q ss_pred cEEEEEEeCCCCEEEEecC
Q 024245 20 SVTDVCFHQTKPILFAGTT 38 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~ 38 (270)
.+.+++.-|||++|++|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678899999999999864
No 480
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=61.61 E-value=3.5 Score=18.04 Aligned_cols=9 Identities=0% Similarity=-0.094 Sum_probs=6.3
Q ss_pred EeecCCCce
Q 024245 259 SMWRNPITM 267 (270)
Q Consensus 259 ~~s~~g~~l 267 (270)
.|||+|++.
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 378888763
No 481
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=60.13 E-value=99 Score=25.62 Aligned_cols=55 Identities=13% Similarity=0.031 Sum_probs=40.3
Q ss_pred cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
.|.|.| ++...+..+.+-....+|.++.|.. |-.+++|--+-..+.+-|+.+.+.
T Consensus 407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~g--dv~yiVTfrqtDPlfviDlsNPen 461 (603)
T COG4880 407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVG--DVLYIVTFRQTDPLFVIDLSNPEN 461 (603)
T ss_pred eeEEEc-CCCcEEEEEeccCCCceEEEEEEeC--ceEEEEEEeccCceEEEEcCCCCC
Confidence 456665 3356667777665557899999988 767788887777888999887653
No 482
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=59.23 E-value=74 Score=23.90 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=52.2
Q ss_pred cccc--ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE----EeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 13 VLRG--HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS----SWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 13 ~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
.+.| ..+.+..+.|-|....|+.-+.++.|+--|..++..... +...-. ..-..+.|+|.. ++|=..+.+|
T Consensus 19 ~vtGL~~ge~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~-g~~~gvDFNP~a--DRlRvvs~~G 95 (236)
T PF14339_consen 19 AVTGLAAGESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALS-GTAFGVDFNPAA--DRLRVVSNTG 95 (236)
T ss_pred EeecccCCCeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeeccccccccc-CceEEEecCccc--CcEEEEccCC
Confidence 3555 457899999999444444446678899999998875443 211111 336789999954 4444444566
Q ss_pred cEEEEEccCCc
Q 024245 87 TVKCWDIENGG 97 (270)
Q Consensus 87 ~i~~wd~~~~~ 97 (270)
+=...+++++.
T Consensus 96 qNlR~npdtGa 106 (236)
T PF14339_consen 96 QNLRLNPDTGA 106 (236)
T ss_pred cEEEECCCCCC
Confidence 55556777765
No 483
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=58.53 E-value=86 Score=24.41 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=37.6
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC--CCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS--QGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~--~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
-.|.+||+.+++.++++..+ .+.....+....+. +..... +..+..++=+..+-|.|+|+.+ ++..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p------~~~~~~~s~lndl~-VD~~~~~~~~~~aYItD~~~~glIV~dl~~-~~s~ 101 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFP------PDIAPPDSFLNDLV-VDVRDGNCDDGFAYITDSGGPGLIVYDLAT-GKSW 101 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--------CCCS-TCGGEEEEE-EECTTTTS-SEEEEEEETTTCEEEEEETTT-TEEE
T ss_pred cEEEEEECCCCcEEEEEECC------hHHcccccccceEE-EEccCCCCcceEEEEeCCCcCcEEEEEccC-CcEE
Confidence 47888999999988887743 12222234444544 443211 1133555556667899999998 5433
No 484
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=57.29 E-value=1.1e+02 Score=25.37 Aligned_cols=59 Identities=8% Similarity=0.130 Sum_probs=42.1
Q ss_pred CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
.++..=+.||.+.+++-+.-.....+...-. .-.+.+.+ ..+.|++++.+..+..|...
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~ll---PgPl~Y~~--~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLL---PGPLCYCP--RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCC---CcCeEEee--cCCEEEEecCceeEEEecHH
Confidence 4778889999999999775444444443322 23567778 66789999998889988763
No 485
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=56.60 E-value=1.3e+02 Score=27.64 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=47.6
Q ss_pred ceEEEEeCCCcceeee-eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE-ecCCC-----cEEEEEcCCCCcc
Q 024245 172 SEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYEDG-----SILVWDIRNPGIP 244 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~-~~~dg-----~i~vwd~~~~~~~ 244 (270)
+.|.+-|......... +. ....+++.. |+| ||+ .|+- .+.++ .|++-|+.+.+.-
T Consensus 329 ~~L~~~D~dG~n~~~ve~~-------------~~~~i~sP~-~SP---DG~-~vAY~ts~e~~~g~s~vYv~~L~t~~~~ 390 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIE-------------DTISVYHPD-ISP---DGK-KVAFCTGIEGLPGKSSVYVRNLNASGSG 390 (912)
T ss_pred CeEEEEecCCCCceEEEec-------------CCCceecCc-CCC---CCC-EEEEEEeecCCCCCceEEEEehhccCCC
Confidence 4777777764444332 33 234566666 998 566 5554 45444 4899999986666
Q ss_pred eeeeeccCCCeeEEEeecCCC
Q 024245 245 LTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 245 ~~~~~~~~~~v~~~~~s~~g~ 265 (270)
+..+...+..|-.-...++|.
T Consensus 391 ~vkl~ve~aaiprwrv~e~gd 411 (912)
T TIGR02171 391 LVKLPVENAAIPRWRVLENGD 411 (912)
T ss_pred ceEeecccccccceEecCCCC
Confidence 666666666666666666554
No 486
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.15 E-value=1.3e+02 Score=25.77 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=22.5
Q ss_pred eEecCCC---CeEEEEecCCCceEEEEeCCCcceeeee
Q 024245 154 DDVPAEG---PKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (270)
Q Consensus 154 ~~~s~~~---~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 188 (270)
.+|+|+. ..+++.+ .|..||+||+.+...++..
T Consensus 171 a~WHP~S~~D~hL~iL~--sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 171 AAWHPSSILDPHLVLLT--SDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred ccccCCccCCceEEEEe--cCcEEEEEecCCcchhhcc
Confidence 5688875 4455433 3799999999876655443
No 487
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=55.80 E-value=9.8 Score=32.75 Aligned_cols=76 Identities=14% Similarity=0.288 Sum_probs=47.7
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCC-cEEEEeCCCCce-----eEEEeec-C--CCcceEEEEEeeCCCCCEE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGG-ELRIWDTVQHRT-----VSSSWVH-S--AAHGIVSVATGPSIGLNKV 79 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~i~vwd~~~~~~-----~~~~~~~-~--~~~~v~~~~~~~~~~~~~l 79 (270)
..+..++.|+.++..++|.+.+.++++++-.| .|.++.+....+ .+.+..+ . ....+..++|+. ..+++
T Consensus 306 a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~--~s~~r 383 (788)
T KOG2109|consen 306 ADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSE--VSTIR 383 (788)
T ss_pred hhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhh--hcceE
Confidence 35677899999999999999999999888765 455555432111 1111111 0 012355567777 66777
Q ss_pred EEEeCCC
Q 024245 80 ISQGRDG 86 (270)
Q Consensus 80 ~s~~~d~ 86 (270)
..++.+|
T Consensus 384 ~~gsc~G 390 (788)
T KOG2109|consen 384 TAGSCEG 390 (788)
T ss_pred eecccCC
Confidence 7777665
No 488
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=55.77 E-value=1e+02 Score=24.51 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=45.6
Q ss_pred cccccccccccEEEEEEeC-------CCCEEEEecCCCcEEEEeCCCCceeEEE-e-ecCCCcceEEEEEeeCCCCCEEE
Q 024245 10 PVAVLRGHRASVTDVCFHQ-------TKPILFAGTTGGELRIWDTVQHRTVSSS-W-VHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~-------~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
|+..+..| .++..+.|-. .|.++++.-..+.|....++.+..+... . ......++..+++.| +|.+.+
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p--DG~Lyv 321 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP--DGALYV 321 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET--TSEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC--CCeEEE
Confidence 55556545 6777888764 3456776666677888777655332211 1 111113699999999 998888
Q ss_pred EEeCCCcE
Q 024245 81 SQGRDGTV 88 (270)
Q Consensus 81 s~~~d~~i 88 (270)
+-..+|.|
T Consensus 322 ~~d~~G~i 329 (331)
T PF07995_consen 322 SDDSDGKI 329 (331)
T ss_dssp EE-TTTTE
T ss_pred EECCCCeE
Confidence 87788876
No 489
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=54.59 E-value=1.8e+02 Score=27.04 Aligned_cols=74 Identities=5% Similarity=-0.032 Sum_probs=42.8
Q ss_pred EEEEeCCCCEEEEecCCCcEEEEeCCCC------ceeEEEeecCCCcceEEEEEeeCCCCCEEEE---EeCCCcEEEEEc
Q 024245 23 DVCFHQTKPILFAGTTGGELRIWDTVQH------RTVSSSWVHSAAHGIVSVATGPSIGLNKVIS---QGRDGTVKCWDI 93 (270)
Q Consensus 23 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s---~~~d~~i~~wd~ 93 (270)
-+...|.++.+...-.+|.+++-.+.+. .....+...-.+-.|..++|........+++ -+.+..++.|++
T Consensus 118 ~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly~~s~pt~~vly~Ds~~~Hv~~yel 197 (1096)
T KOG1897|consen 118 ILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLYGCSDPTLAVLYKDSDGRHVKTYEL 197 (1096)
T ss_pred EEEECCCCcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEEcCCCCCceEEEEEcCCCcEEEEEEe
Confidence 3456788888888888888888777652 3333333222223488888865211223443 344557777776
Q ss_pred cCC
Q 024245 94 ENG 96 (270)
Q Consensus 94 ~~~ 96 (270)
+-+
T Consensus 198 nl~ 200 (1096)
T KOG1897|consen 198 NLR 200 (1096)
T ss_pred ccc
Confidence 543
No 490
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=54.17 E-value=36 Score=30.98 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=32.3
Q ss_pred ccccccccEEEEE-----------EeCCCCEEEEecCCCcEEEEeCC-----CCceeEEEeecC
Q 024245 13 VLRGHRASVTDVC-----------FHQTKPILFAGTTGGELRIWDTV-----QHRTVSSSWVHS 60 (270)
Q Consensus 13 ~~~~h~~~v~~~~-----------~s~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~~ 60 (270)
.+++|...+..++ .||||+.+|.+..||.++.|.+. ..+++...+.|+
T Consensus 219 l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 219 LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred HHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 3455665555544 57899999999999998888763 224455555555
No 491
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=53.76 E-value=30 Score=24.41 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=25.6
Q ss_pred ccEEEEEEeCCC------CEEEEecCCCcEEEEeCCC
Q 024245 19 ASVTDVCFHQTK------PILFAGTTGGELRIWDTVQ 49 (270)
Q Consensus 19 ~~v~~~~~s~~~------~~l~s~~~dg~i~vwd~~~ 49 (270)
..|.+++|||.| .+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999944 3788899999999998663
No 492
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=53.43 E-value=1.1e+02 Score=23.89 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=39.0
Q ss_pred CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe------CCCcEEEEEccCCcc
Q 024245 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG------RDGTVKCWDIENGGL 98 (270)
Q Consensus 39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~ 98 (270)
-..|++||..+.+....-.+-. +.|.+|.|.. +.++++.|. ....+..||..+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~--G~V~~l~~~~--~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGIS--GTVTDLQWAS--NNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCEEEEEECCCCEeecCCCCce--EEEEEEEEec--CCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 3469999998776654443333 5699999986 656666664 355788899887754
No 493
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=52.49 E-value=71 Score=21.63 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=27.5
Q ss_pred cccEEEEEEeCCCCEEE-EecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEee
Q 024245 18 RASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGP 72 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~ 72 (270)
...+.---|.+|-..|+ +|-.|++|+.|.+...+ .+..+..+....+..++++.|
T Consensus 10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lP 66 (136)
T PF08954_consen 10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLP 66 (136)
T ss_dssp -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--
T ss_pred CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecC
Confidence 44566666777766554 45568899999998763 333343333336678899988
No 494
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=51.75 E-value=1.3e+02 Score=24.56 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=46.6
Q ss_pred cEEEEEE--eC-CCC-EEEEecCCCcEEEEeCC---CC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 20 SVTDVCF--HQ-TKP-ILFAGTTGGELRIWDTV---QH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 20 ~v~~~~~--s~-~~~-~l~s~~~dg~i~vwd~~---~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.+..+++ ++ +|. +++....+|.+..|.+. .+ +.++.|... ..+..+.... ....|+.+-++.-|
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~---sQ~EGCVVDD--e~g~LYvgEE~~GI 231 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG---SQPEGCVVDD--ETGRLYVGEEDVGI 231 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S---S-EEEEEEET--TTTEEEEEETTTEE
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC---CcceEEEEec--ccCCEEEecCccEE
Confidence 4666765 34 455 66667888999888874 22 456777654 3488999988 66789999888766
Q ss_pred EEEEcc
Q 024245 89 KCWDIE 94 (270)
Q Consensus 89 ~~wd~~ 94 (270)
.-|+.+
T Consensus 232 W~y~Ae 237 (381)
T PF02333_consen 232 WRYDAE 237 (381)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 666655
No 495
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=49.02 E-value=81 Score=21.31 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=45.3
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeee------ecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ------AYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~------~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
+...+..||.|.++|..+++.+..+.. +...-..+....+. .... +.. +-++--+||.+.+-|
T Consensus 43 l~f~d~~~G~v~V~~~~~G~~va~~~~-------g~~GFvrgvlR~l~R~R~~~gv~~---~~P-f~L~r~~dGrltL~D 111 (135)
T TIGR03054 43 LVFEDRPDGAVAVVETPDGRLVAILEP-------GQNGFVRVMLRGLARARARAGVAA---EPP-FRLTRYDNGRLTLTD 111 (135)
T ss_pred EEEecCCCCeEEEEECCCCCEEEEecC-------CCCchhhHhHHHHHHHHHHcCCCC---CCC-EEEEEEeCCcEEEEc
Confidence 334677899999999999999999974 33221221111111 0111 222 888899999999999
Q ss_pred cCCCCcce
Q 024245 238 IRNPGIPL 245 (270)
Q Consensus 238 ~~~~~~~~ 245 (270)
-.+ ++.+
T Consensus 112 p~T-g~~i 118 (135)
T TIGR03054 112 PAT-GWSI 118 (135)
T ss_pred CCC-CcEE
Confidence 888 5543
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=48.01 E-value=1.7e+02 Score=24.80 Aligned_cols=179 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred EEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcc---eEEEEEeeCCCCCEEEEEeC-------------CCc
Q 024245 24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG---IVSVATGPSIGLNKVISQGR-------------DGT 87 (270)
Q Consensus 24 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~l~s~~~-------------d~~ 87 (270)
+...++|.+++... ..+..+|+- |+.+..+.... .. =..+...| +|++|+.+.. ...
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~--~~~~~HHD~~~l~--nGn~L~l~~~~~~~~~~~~~~~~~D~ 225 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPG--GYYDFHHDIDELP--NGNLLILASETKYVDEDKDVDTVEDV 225 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--T--TEE-B-S-EEE-T--TS-EEEEEEETTEE-TS-EE---S-E
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCC--cccccccccEECC--CCCEEEEEeecccccCCCCccEecCE
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 167 (270)
|..+| .+|+.+. ...+..+-...........................+.. +.+.+....+++ +
T Consensus 226 Ivevd-~tG~vv~--~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns-------------i~yd~~dd~iiv-S 288 (477)
T PF05935_consen 226 IVEVD-PTGEVVW--EWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS-------------IDYDPSDDSIIV-S 288 (477)
T ss_dssp EEEE--TTS-EEE--EEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE-------------EEEETTTTEEEE-E
T ss_pred EEEEC-CCCCEEE--EEehHHhCCcccccccccccccccccCCCCCCccccCc-------------cEEeCCCCeEEE-E
Q ss_pred cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCC---------------CCCCCceEEEEecCCC-
Q 024245 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP---------------SKSQGFVNVLAGYEDG- 231 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p---------------~~~~g~~~l~~~~~dg- 231 (270)
+-.-..|...|.++++....+. .+....... -... +.| +-.-|+ .-+.--.+|
T Consensus 289 sR~~s~V~~Id~~t~~i~Wilg--------~~~~w~~~~-~~~l-l~~vd~~G~~~~~~~~~~~~~~gQ-H~~~~~~~g~ 357 (477)
T PF05935_consen 289 SRHQSAVIKIDYRTGKIKWILG--------PPGGWNGTY-QDYL-LTPVDSNGNPIDCGDGDFDWFWGQ-HTAHLIPDGP 357 (477)
T ss_dssp ETTT-EEEEEE-TTS-EEEEES---------STT--TTT-GGGB--EEB-TTS-B-EBSSSS----SS--EEEEE-TTS-
T ss_pred cCcceEEEEEECCCCcEEEEeC--------CCCCCCccc-chhe-eeeeccCCceeeccCCCCcccccc-cceEEcCCCC
Q ss_pred --cEEEEE
Q 024245 232 --SILVWD 237 (270)
Q Consensus 232 --~i~vwd 237 (270)
.|.++|
T Consensus 358 ~~~l~vFD 365 (477)
T PF05935_consen 358 QGNLLVFD 365 (477)
T ss_dssp --SEEEEE
T ss_pred eEEEEEEE
No 497
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=47.68 E-value=2.8e+02 Score=27.13 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=11.9
Q ss_pred EEEEEeCCCCEEEEec
Q 024245 22 TDVCFHQTKPILFAGT 37 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~ 37 (270)
.+++++++|.+.++-+
T Consensus 596 r~Iavg~~G~lyvaEs 611 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAES 611 (1899)
T ss_pred hceeecCCceEEEEec
Confidence 7888999887666544
No 498
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=47.42 E-value=2.2e+02 Score=25.94 Aligned_cols=165 Identities=11% Similarity=0.087 Sum_probs=84.5
Q ss_pred ccc-cccccEEEEEEe---C----CCCEEEEecCCCcEEEEeCCCC---------------ceeEEEeec-CCCcceEEE
Q 024245 13 VLR-GHRASVTDVCFH---Q----TKPILFAGTTGGELRIWDTVQH---------------RTVSSSWVH-SAAHGIVSV 68 (270)
Q Consensus 13 ~~~-~h~~~v~~~~~s---~----~~~~l~s~~~dg~i~vwd~~~~---------------~~~~~~~~~-~~~~~v~~~ 68 (270)
.+. .-..+|..+.|. . ..++|++-. ...+.|+...-. .++..+..+ .+..+...+
T Consensus 73 ~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv 151 (765)
T PF10214_consen 73 AWSIDDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADV 151 (765)
T ss_pred eeEcCCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceE
Confidence 344 466889999998 2 223555544 456777772111 233333311 111457899
Q ss_pred EEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc-----------cceEEEEeeccCCccceecCCCCceEEE
Q 024245 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN-----------SYHFCKLSLVKEPYANAKQANEPKDCYE 137 (270)
Q Consensus 69 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (270)
+|+|.. ...||.....|...||++................ ......+.+........+........++
T Consensus 152 ~FnP~~-~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d 230 (765)
T PF10214_consen 152 AFNPWD-QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLID 230 (765)
T ss_pred EeccCc-cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEE
Confidence 999973 4689999999999999993222111111111100 0111122233333344455555556667
Q ss_pred eccCceeeeccCCCCC-----eEecCC-CCeEEEEecCCCceEEEEeCCCc
Q 024245 138 REVGETVDTDSLCDSK-----DDVPAE-GPKYMAVAGEQLSEVEIWDLNTA 182 (270)
Q Consensus 138 ~~~~~~~~~~~~~~~~-----~~~s~~-~~~~~~~~~~~d~~i~iwd~~~~ 182 (270)
+............... +.-++. ..++++.|. ..|...|+...
T Consensus 231 ~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~~ 278 (765)
T PF10214_consen 231 FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKSS 278 (765)
T ss_pred CCCCCccchhccCCChhheeeEEecCCccceEEEEec---CeEEEEEccCC
Confidence 7665543211111111 444455 224444343 57888888763
No 499
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=47.32 E-value=1.4e+02 Score=23.53 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=18.0
Q ss_pred cceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
..+..+.-++ +|.+++++..-....-||.-
T Consensus 145 gs~~~~~r~~--dG~~vavs~~G~~~~s~~~G 174 (302)
T PF14870_consen 145 GSINDITRSS--DGRYVAVSSRGNFYSSWDPG 174 (302)
T ss_dssp --EEEEEE-T--TS-EEEEETTSSEEEEE-TT
T ss_pred ceeEeEEECC--CCcEEEEECcccEEEEecCC
Confidence 5588888888 88877777665555667654
No 500
>PLN02153 epithiospecifier protein
Probab=46.80 E-value=1.5e+02 Score=23.65 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=15.2
Q ss_pred CCCEEEEecCC-----CcEEEEeCCCCcee
Q 024245 29 TKPILFAGTTG-----GELRIWDTVQHRTV 53 (270)
Q Consensus 29 ~~~~l~s~~~d-----g~i~vwd~~~~~~~ 53 (270)
++.+++.|+.+ ..+.+||..+.+..
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 35566666653 35778888765443
Done!