Query 024245
Match_columns 270
No_of_seqs 461 out of 1078
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 04:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 4.6E-38 1.6E-42 242.1 28.1 236 9-268 4-244 (304)
2 4gqb_B Methylosome protein 50; 100.0 4E-37 1.4E-41 240.3 24.6 224 15-266 79-313 (344)
3 1vyh_C Platelet-activating fac 100.0 1.3E-36 4.6E-41 243.2 27.0 234 9-268 99-354 (410)
4 1got_B GT-beta; complex (GTP-b 100.0 5.3E-36 1.8E-40 234.1 29.0 236 8-268 45-286 (340)
5 3ow8_A WD repeat-containing pr 100.0 5.8E-36 2E-40 231.9 27.3 230 10-268 72-306 (321)
6 1vyh_C Platelet-activating fac 100.0 3.7E-36 1.3E-40 240.6 26.7 232 9-268 141-396 (410)
7 2ynn_A Coatomer subunit beta'; 100.0 3.9E-36 1.3E-40 231.3 25.6 230 9-265 46-283 (304)
8 2pbi_B Guanine nucleotide-bind 100.0 2.1E-35 7.3E-40 231.8 30.0 234 8-268 54-342 (354)
9 3iz6_a 40S ribosomal protein R 100.0 4.2E-36 1.4E-40 238.0 25.4 247 5-268 53-360 (380)
10 2pm7_B Protein transport prote 100.0 4.5E-35 1.5E-39 224.6 27.3 239 11-268 2-270 (297)
11 3ow8_A WD repeat-containing pr 100.0 3.5E-35 1.2E-39 227.5 26.6 229 9-268 23-264 (321)
12 4g56_B MGC81050 protein; prote 100.0 2E-35 6.9E-40 232.1 22.8 229 11-267 87-327 (357)
13 4ery_A WD repeat-containing pr 100.0 4.5E-34 1.5E-38 220.6 29.2 235 9-268 56-295 (312)
14 3frx_A Guanine nucleotide-bind 100.0 1.4E-34 4.8E-39 224.1 25.6 231 8-268 7-253 (319)
15 3bg1_A Protein SEC13 homolog; 100.0 1.7E-34 5.9E-39 223.3 24.6 238 12-268 7-278 (316)
16 1got_B GT-beta; complex (GTP-b 100.0 3.2E-33 1.1E-37 218.3 29.3 232 9-268 88-328 (340)
17 4aow_A Guanine nucleotide-bind 100.0 2.1E-33 7.2E-38 219.1 27.1 233 9-268 29-272 (340)
18 4gqb_B Methylosome protein 50; 100.0 5.4E-34 1.8E-38 222.6 22.0 203 13-240 122-331 (344)
19 3frx_A Guanine nucleotide-bind 100.0 5.5E-33 1.9E-37 215.1 27.3 228 9-268 56-302 (319)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-33 1.3E-37 218.3 25.5 235 9-268 6-268 (345)
21 2xzm_R RACK1; ribosome, transl 100.0 1.5E-32 5.2E-37 214.8 26.5 230 9-268 67-325 (343)
22 4ery_A WD repeat-containing pr 100.0 2.4E-32 8.2E-37 210.9 27.3 231 9-267 14-252 (312)
23 2xzm_R RACK1; ribosome, transl 100.0 2.5E-32 8.4E-37 213.6 27.5 232 9-268 12-271 (343)
24 1erj_A Transcriptional repress 100.0 3.1E-32 1.1E-36 216.8 27.4 215 19-262 124-362 (393)
25 2hes_X YDR267CP; beta-propelle 100.0 1.7E-32 5.8E-37 213.4 24.8 238 8-268 4-266 (330)
26 4g56_B MGC81050 protein; prote 100.0 9.2E-33 3.1E-37 217.0 22.9 208 13-245 134-348 (357)
27 1nr0_A Actin interacting prote 100.0 4.3E-32 1.5E-36 227.5 27.4 237 8-268 49-340 (611)
28 3jrp_A Fusion protein of prote 100.0 1.8E-32 6.3E-37 216.6 22.0 240 9-268 2-272 (379)
29 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-31 5.4E-36 210.9 26.7 229 14-268 4-260 (372)
30 1nr0_A Actin interacting prote 100.0 9.2E-32 3.2E-36 225.4 26.1 226 16-268 16-255 (611)
31 3mmy_A MRNA export factor; mRN 100.0 1.4E-31 4.8E-36 210.7 25.5 240 6-268 27-331 (368)
32 3zwl_B Eukaryotic translation 100.0 3.3E-31 1.1E-35 208.6 26.9 228 11-268 25-275 (369)
33 4gga_A P55CDC, cell division c 100.0 3.9E-31 1.3E-35 212.3 27.3 227 14-268 143-380 (420)
34 2hes_X YDR267CP; beta-propelle 100.0 1.3E-31 4.5E-36 208.3 23.8 236 10-267 48-312 (330)
35 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.4E-31 1.2E-35 207.2 26.1 229 14-265 57-316 (345)
36 4e54_B DNA damage-binding prot 100.0 6.7E-32 2.3E-36 217.7 22.7 235 10-267 111-359 (435)
37 3dwl_C Actin-related protein 2 100.0 5.3E-33 1.8E-37 220.0 15.8 229 14-268 7-267 (377)
38 3dm0_A Maltose-binding peripla 100.0 2.4E-31 8.1E-36 226.2 26.2 232 10-268 374-618 (694)
39 1erj_A Transcriptional repress 100.0 2.9E-31 9.9E-36 211.2 24.9 233 16-268 62-326 (393)
40 3f3f_A Nucleoporin SEH1; struc 100.0 8.3E-31 2.8E-35 204.6 25.8 242 9-268 2-322 (351)
41 4ggc_A P55CDC, cell division c 100.0 1.3E-30 4.5E-35 201.4 26.0 249 5-268 8-300 (318)
42 2aq5_A Coronin-1A; WD40 repeat 100.0 8.4E-31 2.9E-35 209.2 25.6 234 9-268 72-329 (402)
43 2j04_B YDR362CP, TAU91; beta p 100.0 5.3E-32 1.8E-36 221.5 18.8 233 17-268 132-413 (524)
44 3vl1_A 26S proteasome regulato 100.0 1.4E-30 4.9E-35 208.8 25.9 231 9-265 130-398 (420)
45 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-30 4E-35 225.6 26.4 234 9-267 4-243 (814)
46 2ymu_A WD-40 repeat protein; u 100.0 1.8E-30 6.3E-35 216.3 26.1 226 9-268 335-565 (577)
47 1sq9_A Antiviral protein SKI8; 100.0 1.2E-30 4.3E-35 207.6 23.8 236 9-268 7-307 (397)
48 2pm9_A Protein WEB1, protein t 100.0 3E-31 1E-35 212.4 19.7 233 9-268 104-399 (416)
49 4a11_B DNA excision repair pro 100.0 7.2E-30 2.5E-34 203.7 27.4 245 9-268 34-350 (408)
50 3odt_A Protein DOA1; ubiquitin 100.0 7.9E-30 2.7E-34 196.5 26.6 230 7-268 7-241 (313)
51 4gq1_A NUP37; propeller, trans 100.0 9.4E-31 3.2E-35 208.2 21.9 220 10-268 128-375 (393)
52 3gre_A Serine/threonine-protei 100.0 3.3E-31 1.1E-35 213.7 19.1 231 8-263 52-314 (437)
53 3dm0_A Maltose-binding peripla 100.0 2E-30 7E-35 220.4 24.8 231 10-268 422-678 (694)
54 2ymu_A WD-40 repeat protein; u 100.0 5.1E-30 1.7E-34 213.6 26.4 227 10-268 8-278 (577)
55 2pm9_A Protein WEB1, protein t 100.0 2E-30 6.7E-35 207.7 22.5 235 10-267 60-321 (416)
56 4aez_A CDC20, WD repeat-contai 100.0 2.5E-29 8.7E-34 200.6 28.6 230 10-268 125-365 (401)
57 2pbi_B Guanine nucleotide-bind 100.0 8.4E-30 2.9E-34 200.0 25.2 204 9-237 145-354 (354)
58 3ei3_B DNA damage-binding prot 100.0 5.9E-30 2E-34 203.0 24.3 232 8-266 63-324 (383)
59 1sq9_A Antiviral protein SKI8; 100.0 2.8E-30 9.5E-35 205.6 22.5 241 9-264 53-366 (397)
60 3zwl_B Eukaryotic translation 100.0 4.2E-29 1.4E-33 196.6 28.9 235 8-268 64-331 (369)
61 3i2n_A WD repeat-containing pr 100.0 3.8E-30 1.3E-34 201.8 22.3 240 1-265 1-272 (357)
62 4ggc_A P55CDC, cell division c 100.0 3.4E-29 1.2E-33 193.5 26.5 213 9-240 56-315 (318)
63 1r5m_A SIR4-interacting protei 100.0 9.3E-30 3.2E-34 204.0 23.9 222 16-268 106-346 (425)
64 3jro_A Fusion protein of prote 100.0 1.7E-30 5.8E-35 222.4 20.6 238 11-268 2-270 (753)
65 3v7d_B Cell division control p 100.0 1.1E-29 3.7E-34 206.3 23.9 223 9-262 112-362 (464)
66 2xyi_A Probable histone-bindin 100.0 3.2E-30 1.1E-34 207.6 20.5 233 12-265 122-391 (430)
67 1gxr_A ESG1, transducin-like e 100.0 1.3E-28 4.4E-33 191.6 28.5 223 16-268 95-322 (337)
68 2pm7_B Protein transport prote 100.0 3.7E-29 1.2E-33 191.8 25.0 212 9-240 44-285 (297)
69 3v7d_B Cell division control p 100.0 8.9E-29 3E-33 201.0 28.5 233 8-268 152-407 (464)
70 3mkq_A Coatomer beta'-subunit; 100.0 2E-29 6.9E-34 217.8 26.1 232 8-266 45-284 (814)
71 1gxr_A ESG1, transducin-like e 100.0 3.9E-29 1.3E-33 194.5 25.3 225 14-268 47-281 (337)
72 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-29 1.5E-33 224.5 29.3 241 10-267 607-897 (1249)
73 3dw8_B Serine/threonine-protei 100.0 6.8E-30 2.3E-34 206.5 21.6 235 17-268 27-358 (447)
74 4e54_B DNA damage-binding prot 100.0 3.1E-29 1.1E-33 202.1 24.5 240 10-268 156-416 (435)
75 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-28 3.8E-33 199.7 27.6 244 13-268 97-370 (450)
76 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-29 5.2E-34 198.6 21.7 225 9-268 10-256 (355)
77 4aow_A Guanine nucleotide-bind 100.0 5.1E-29 1.8E-33 194.2 24.5 230 9-268 77-322 (340)
78 3vl1_A 26S proteasome regulato 100.0 8.8E-29 3E-33 198.4 26.0 231 10-267 90-349 (420)
79 4aez_A CDC20, WD repeat-contai 100.0 4.7E-29 1.6E-33 199.0 23.7 224 14-268 87-319 (401)
80 4h5i_A Guanine nucleotide-exch 100.0 4E-29 1.4E-33 196.8 22.3 199 16-240 131-343 (365)
81 3i2n_A WD repeat-containing pr 100.0 3.6E-29 1.2E-33 196.3 21.9 230 16-267 63-336 (357)
82 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-29 5.2E-34 207.0 19.0 227 12-267 201-458 (524)
83 1r5m_A SIR4-interacting protei 100.0 1E-28 3.4E-33 198.0 23.3 229 8-267 139-409 (425)
84 3ei3_B DNA damage-binding prot 100.0 1.5E-28 5E-33 194.9 23.9 234 14-268 114-368 (383)
85 1yfq_A Cell cycle arrest prote 100.0 1.8E-28 6.3E-33 191.3 23.8 227 11-268 4-267 (342)
86 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-28 9.1E-33 192.4 24.1 209 10-240 44-274 (372)
87 3k26_A Polycomb protein EED; W 100.0 1.3E-28 4.5E-33 193.6 22.0 225 17-268 68-351 (366)
88 3odt_A Protein DOA1; ubiquitin 100.0 7.4E-28 2.5E-32 185.5 25.5 224 9-268 50-282 (313)
89 1yfq_A Cell cycle arrest prote 100.0 1.8E-28 6.2E-33 191.3 22.2 228 11-268 49-308 (342)
90 3k26_A Polycomb protein EED; W 100.0 1.1E-28 3.9E-33 194.0 20.7 237 13-268 13-303 (366)
91 3f3f_A Nucleoporin SEH1; struc 100.0 8.2E-28 2.8E-32 187.6 24.3 217 9-248 48-344 (351)
92 3iz6_a 40S ribosomal protein R 100.0 8.1E-28 2.8E-32 190.5 24.6 211 9-240 148-375 (380)
93 3bg1_A Protein SEC13 homolog; 100.0 2.8E-28 9.7E-33 188.4 21.0 210 10-240 49-293 (316)
94 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-27 5.2E-32 192.8 25.3 227 9-268 190-423 (445)
95 1p22_A F-BOX/WD-repeat protein 100.0 8.4E-28 2.9E-32 193.8 23.4 225 8-267 163-398 (435)
96 1p22_A F-BOX/WD-repeat protein 100.0 3.3E-27 1.1E-31 190.3 26.4 220 11-267 126-349 (435)
97 3dw8_B Serine/threonine-protei 100.0 3.2E-28 1.1E-32 196.6 20.3 237 9-268 72-432 (447)
98 4h5i_A Guanine nucleotide-exch 100.0 1.5E-28 5E-33 193.6 17.7 227 13-268 68-328 (365)
99 3jrp_A Fusion protein of prote 100.0 2.2E-27 7.4E-32 187.6 23.4 213 9-240 46-287 (379)
100 1pgu_A Actin interacting prote 100.0 3.1E-27 1E-31 198.1 25.5 230 16-267 16-267 (615)
101 2oaj_A Protein SNI1; WD40 repe 100.0 3.5E-27 1.2E-31 204.9 26.3 230 14-262 13-281 (902)
102 4gga_A P55CDC, cell division c 100.0 8.8E-27 3E-31 187.0 26.0 233 8-264 179-418 (420)
103 3gre_A Serine/threonine-protei 100.0 1.2E-26 4E-31 187.1 26.4 231 16-267 109-424 (437)
104 3dwl_C Actin-related protein 2 100.0 4.1E-28 1.4E-32 191.9 17.2 205 9-239 46-280 (377)
105 2w18_A PALB2, fancn, partner a 100.0 1.3E-27 4.4E-32 181.5 18.6 195 18-268 111-342 (356)
106 3sfz_A APAF-1, apoptotic pepti 100.0 8.4E-28 2.9E-32 216.2 20.4 222 17-268 960-1194(1249)
107 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.5E-26 1.2E-30 184.8 27.9 219 8-262 149-372 (445)
108 1pgu_A Actin interacting prote 100.0 1E-26 3.6E-31 194.8 25.3 230 9-263 54-349 (615)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 5.6E-26 1.9E-30 181.3 25.2 228 20-267 36-282 (402)
110 2w18_A PALB2, fancn, partner a 100.0 3E-27 1E-31 179.5 15.7 168 9-238 169-355 (356)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.1E-26 1.1E-30 185.4 22.6 223 18-267 4-322 (450)
112 2j04_A TAU60, YPL007P, hypothe 99.9 3.5E-26 1.2E-30 184.3 21.0 186 16-268 83-283 (588)
113 1l0q_A Surface layer protein; 99.9 3.7E-25 1.3E-29 175.8 26.2 227 9-267 23-258 (391)
114 2xyi_A Probable histone-bindin 99.9 5.6E-26 1.9E-30 182.8 21.0 212 8-240 171-410 (430)
115 3jro_A Fusion protein of prote 99.9 8.4E-26 2.9E-30 193.5 22.7 212 9-240 44-285 (753)
116 2oaj_A Protein SNI1; WD40 repe 99.9 1E-26 3.5E-31 202.0 15.7 231 12-261 429-690 (902)
117 3bws_A Protein LP49; two-domai 99.9 6.1E-25 2.1E-29 176.8 25.0 225 13-267 164-415 (433)
118 3lrv_A PRE-mRNA-splicing facto 99.9 1.6E-26 5.5E-31 180.6 14.7 179 26-268 44-230 (343)
119 3lrv_A PRE-mRNA-splicing facto 99.9 3.2E-25 1.1E-29 173.3 20.4 168 16-242 123-294 (343)
120 4a11_B DNA excision repair pro 99.9 2.5E-24 8.5E-29 171.6 25.3 216 15-249 96-373 (408)
121 3vu4_A KMHSV2; beta-propeller 99.9 5.5E-24 1.9E-28 167.0 24.9 188 19-240 59-271 (355)
122 3mmy_A MRNA export factor; mRN 99.9 9.7E-25 3.3E-29 171.6 19.1 202 11-240 79-346 (368)
123 3bws_A Protein LP49; two-domai 99.9 1.8E-24 6.3E-29 174.0 20.3 228 11-267 116-359 (433)
124 2j04_A TAU60, YPL007P, hypothe 99.9 1E-24 3.4E-29 175.9 16.0 190 14-268 11-241 (588)
125 1l0q_A Surface layer protein; 99.9 2.2E-23 7.4E-28 165.6 23.2 206 31-267 3-214 (391)
126 4gq1_A NUP37; propeller, trans 99.9 6.4E-25 2.2E-29 174.6 12.4 200 17-266 88-311 (393)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.2E-22 1.1E-26 160.0 26.1 224 10-267 170-412 (415)
128 2ojh_A Uncharacterized protein 99.9 3E-22 1E-26 152.6 18.8 225 12-267 35-286 (297)
129 1nir_A Nitrite reductase; hemo 99.9 2.3E-21 8E-26 159.7 25.4 237 9-267 170-435 (543)
130 3u4y_A Uncharacterized protein 99.9 2E-20 6.9E-25 145.2 23.0 230 9-267 31-287 (331)
131 2oit_A Nucleoporin 214KDA; NH2 99.9 4.1E-21 1.4E-25 154.3 15.0 186 18-267 36-255 (434)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-20 5.1E-25 150.4 17.9 220 12-267 111-368 (415)
133 1ri6_A Putative isomerase YBHE 99.9 1.3E-19 4.5E-24 141.1 21.6 234 16-267 35-291 (343)
134 3vgz_A Uncharacterized protein 99.9 3.7E-19 1.3E-23 139.1 24.2 221 19-267 89-328 (353)
135 2oit_A Nucleoporin 214KDA; NH2 99.9 2E-20 6.9E-25 150.2 16.4 163 17-240 91-278 (434)
136 2ecf_A Dipeptidyl peptidase IV 99.9 9.8E-20 3.4E-24 156.0 21.0 223 18-267 36-351 (741)
137 3vgz_A Uncharacterized protein 99.8 1.9E-18 6.4E-23 135.2 25.5 224 17-266 39-285 (353)
138 3hfq_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 139.5 20.5 234 16-267 37-300 (347)
139 3u4y_A Uncharacterized protein 99.8 1.2E-18 4.2E-23 135.1 23.5 219 25-267 4-235 (331)
140 1nir_A Nitrite reductase; hemo 99.8 1.3E-18 4.4E-23 143.5 23.4 236 9-267 213-493 (543)
141 3o4h_A Acylamino-acid-releasin 99.8 9E-20 3.1E-24 152.2 16.5 221 17-267 20-260 (582)
142 2ecf_A Dipeptidyl peptidase IV 99.8 6.6E-19 2.3E-23 150.9 20.0 225 20-267 110-394 (741)
143 1xfd_A DIP, dipeptidyl aminope 99.8 1.5E-19 5E-24 154.5 15.2 228 19-267 17-320 (723)
144 1ri6_A Putative isomerase YBHE 99.8 2.4E-18 8.2E-23 133.9 19.6 232 11-270 77-340 (343)
145 2ojh_A Uncharacterized protein 99.8 7.3E-18 2.5E-22 128.2 19.8 205 35-267 17-231 (297)
146 1pby_B Quinohemoprotein amine 99.8 8.8E-18 3E-22 130.4 19.9 219 20-267 35-294 (337)
147 1pby_B Quinohemoprotein amine 99.8 6.7E-18 2.3E-22 131.0 17.7 198 20-251 83-320 (337)
148 3scy_A Hypothetical bacterial 99.8 1.6E-16 5.6E-21 124.7 25.8 229 17-267 48-320 (361)
149 1xfd_A DIP, dipeptidyl aminope 99.8 6.4E-18 2.2E-22 144.4 18.0 233 13-268 108-425 (723)
150 2z3z_A Dipeptidyl aminopeptida 99.8 1.8E-17 6E-22 141.4 20.6 229 19-267 82-370 (706)
151 2z3z_A Dipeptidyl aminopeptida 99.8 3.9E-18 1.3E-22 145.4 16.4 227 13-267 115-415 (706)
152 1k32_A Tricorn protease; prote 99.8 1.8E-17 6.2E-22 146.9 19.9 219 12-267 239-486 (1045)
153 1z68_A Fibroblast activation p 99.8 4E-18 1.4E-22 145.6 14.6 226 22-267 19-326 (719)
154 1jmx_B Amine dehydrogenase; ox 99.8 3.3E-17 1.1E-21 127.8 18.5 214 9-251 32-335 (349)
155 1jmx_B Amine dehydrogenase; ox 99.8 4.6E-17 1.6E-21 127.0 19.2 224 23-267 4-309 (349)
156 2oiz_A Aromatic amine dehydrog 99.8 1.7E-16 5.7E-21 124.6 22.2 231 9-265 42-360 (361)
157 3pe7_A Oligogalacturonate lyas 99.7 1.2E-16 4.1E-21 126.6 17.9 236 8-267 20-304 (388)
158 3hfq_A Uncharacterized protein 99.7 1.3E-15 4.6E-20 118.8 22.2 207 11-239 78-316 (347)
159 4a5s_A Dipeptidyl peptidase 4 99.7 3.3E-16 1.1E-20 134.2 19.4 229 18-267 16-333 (740)
160 1k32_A Tricorn protease; prote 99.7 2.7E-16 9.3E-21 139.4 18.9 218 12-267 197-435 (1045)
161 1jof_A Carboxy-CIS,CIS-muconat 99.7 8.9E-16 3E-20 120.8 16.7 237 19-267 40-324 (365)
162 3fvz_A Peptidyl-glycine alpha- 99.7 2.5E-14 8.4E-19 110.9 24.5 228 18-266 23-305 (329)
163 2dg1_A DRP35, lactonase; beta 99.7 2E-14 6.8E-19 111.5 22.9 237 11-266 37-293 (333)
164 3e5z_A Putative gluconolactona 99.7 3.2E-14 1.1E-18 108.6 23.5 225 10-266 19-270 (296)
165 3scy_A Hypothetical bacterial 99.7 2.2E-14 7.6E-19 112.6 22.1 184 18-261 154-360 (361)
166 2xdw_A Prolyl endopeptidase; a 99.7 2.9E-14 9.8E-19 121.7 22.9 231 16-267 122-394 (710)
167 3pe7_A Oligogalacturonate lyas 99.7 1E-14 3.4E-19 115.5 18.7 234 10-267 72-365 (388)
168 3c5m_A Oligogalacturonate lyas 99.6 2.4E-15 8.3E-20 119.3 11.1 232 9-267 21-297 (396)
169 3o4h_A Acylamino-acid-releasin 99.6 3E-14 1E-18 118.9 18.0 173 21-267 112-296 (582)
170 1z68_A Fibroblast activation p 99.6 1.6E-14 5.4E-19 123.4 14.4 83 10-98 48-142 (719)
171 1q7f_A NHL, brain tumor CG1071 99.6 3.7E-12 1.3E-16 96.6 24.0 222 16-267 27-265 (286)
172 3no2_A Uncharacterized protein 99.6 3E-12 1E-16 96.5 22.8 207 29-267 4-227 (276)
173 3azo_A Aminopeptidase; POP fam 99.6 5.3E-13 1.8E-17 113.0 20.3 233 9-267 14-308 (662)
174 1qks_A Cytochrome CD1 nitrite 99.6 4.4E-12 1.5E-16 104.7 25.0 226 19-267 197-454 (567)
175 2bkl_A Prolyl endopeptidase; m 99.5 2.3E-13 7.9E-18 115.8 17.2 230 16-267 118-377 (695)
176 3azo_A Aminopeptidase; POP fam 99.5 2.5E-13 8.5E-18 115.0 17.2 186 17-264 128-348 (662)
177 3dsm_A Uncharacterized protein 99.5 2.2E-11 7.5E-16 94.2 24.8 216 19-264 44-278 (328)
178 3g4e_A Regucalcin; six bladed 99.5 1.4E-11 4.9E-16 94.0 23.4 227 15-267 9-256 (297)
179 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.2E-12 4.3E-17 102.8 17.6 202 21-240 85-341 (365)
180 3c5m_A Oligogalacturonate lyas 99.5 5.1E-13 1.7E-17 105.9 15.2 215 23-267 85-365 (396)
181 2gop_A Trilobed protease; beta 99.5 4.8E-12 1.6E-16 98.6 19.3 209 19-267 59-315 (347)
182 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.8E-11 1.3E-15 92.1 23.1 226 14-265 13-280 (314)
183 1qks_A Cytochrome CD1 nitrite 99.5 1.6E-11 5.4E-16 101.4 21.9 185 28-267 165-356 (567)
184 1xip_A Nucleoporin NUP159; bet 99.5 4E-12 1.4E-16 99.5 17.3 169 20-268 39-229 (388)
185 2oiz_A Aromatic amine dehydrog 99.5 7.7E-12 2.6E-16 98.1 18.3 212 38-267 29-319 (361)
186 1rwi_B Serine/threonine-protei 99.5 1.1E-10 3.7E-15 87.6 23.3 218 20-267 25-248 (270)
187 4a5s_A Dipeptidyl peptidase 4 99.4 5.5E-12 1.9E-16 108.1 17.5 83 10-98 48-144 (740)
188 1yr2_A Prolyl oligopeptidase; 99.4 2.4E-11 8.2E-16 104.2 20.9 227 16-267 160-421 (741)
189 1q7f_A NHL, brain tumor CG1071 99.4 1E-10 3.5E-15 88.6 22.0 196 16-240 74-280 (286)
190 2ghs_A AGR_C_1268P; regucalcin 99.4 3.9E-10 1.3E-14 87.1 25.4 221 19-267 49-286 (326)
191 2mad_H Methylamine dehydrogena 99.4 4.3E-10 1.5E-14 88.4 25.7 204 23-248 70-357 (373)
192 3dsm_A Uncharacterized protein 99.4 2.5E-10 8.7E-15 88.3 21.0 201 37-267 14-239 (328)
193 3fvz_A Peptidyl-glycine alpha- 99.4 3E-10 1E-14 87.9 20.7 202 17-240 89-322 (329)
194 2dg1_A DRP35, lactonase; beta 99.3 5.8E-11 2E-15 92.0 16.3 219 19-267 6-247 (333)
195 3sjl_D Methylamine dehydrogena 99.3 2.4E-09 8.4E-14 83.5 24.7 216 21-263 139-384 (386)
196 3c75_H MADH, methylamine dehyd 99.3 3.8E-10 1.3E-14 89.5 20.4 216 23-263 122-423 (426)
197 2iwa_A Glutamine cyclotransfer 99.3 1.1E-09 3.9E-14 81.0 21.2 191 10-267 11-220 (266)
198 3dr2_A Exported gluconolactona 99.3 5.2E-10 1.8E-14 85.6 20.2 226 12-267 38-291 (305)
199 2z2n_A Virginiamycin B lyase; 99.3 7.7E-09 2.6E-13 78.5 26.5 223 15-267 11-239 (299)
200 1mda_H Methylamine dehydrogena 99.3 2.7E-10 9.2E-15 88.9 17.9 230 10-263 58-367 (368)
201 2hz6_A Endoplasmic reticulum t 99.3 3.4E-12 1.2E-16 100.4 7.3 205 29-265 8-216 (369)
202 3nol_A Glutamine cyclotransfer 99.3 1.2E-09 4.2E-14 80.0 18.6 190 10-267 33-239 (262)
203 3hrp_A Uncharacterized protein 99.3 9E-09 3.1E-13 82.0 24.7 230 19-267 131-394 (409)
204 2z2n_A Virginiamycin B lyase; 99.2 4.1E-08 1.4E-12 74.5 25.9 220 17-267 55-280 (299)
205 3iuj_A Prolyl endopeptidase; h 99.2 1.2E-09 4.2E-14 92.9 18.6 226 16-267 126-385 (693)
206 2gop_A Trilobed protease; beta 99.2 4.9E-09 1.7E-13 81.5 20.4 192 21-254 106-342 (347)
207 1rwi_B Serine/threonine-protei 99.2 3.2E-09 1.1E-13 79.5 18.0 193 19-240 67-264 (270)
208 2ece_A 462AA long hypothetical 99.2 5E-09 1.7E-13 82.6 19.1 216 5-267 117-395 (462)
209 2qc5_A Streptogramin B lactona 99.2 1.3E-07 4.4E-12 71.7 26.4 220 17-266 18-243 (300)
210 2xdw_A Prolyl endopeptidase; a 99.1 2.3E-08 7.9E-13 85.4 23.2 197 21-240 173-414 (710)
211 3nok_A Glutaminyl cyclase; bet 99.1 1.2E-08 4.3E-13 74.7 18.3 189 9-267 44-249 (268)
212 3e5z_A Putative gluconolactona 99.1 1.6E-08 5.5E-13 76.9 20.0 198 11-240 61-286 (296)
213 3no2_A Uncharacterized protein 99.1 2.9E-08 1E-12 74.7 20.8 225 9-258 26-271 (276)
214 2qc5_A Streptogramin B lactona 99.1 2.4E-07 8.1E-12 70.2 25.9 219 18-267 61-286 (300)
215 2bkl_A Prolyl endopeptidase; m 99.1 6.6E-09 2.3E-13 88.5 18.5 192 22-240 171-397 (695)
216 3mbr_X Glutamine cyclotransfer 99.1 8.9E-08 3.1E-12 69.6 21.4 191 9-267 10-218 (243)
217 1xip_A Nucleoporin NUP159; bet 99.1 5E-09 1.7E-13 82.1 15.1 143 16-226 86-230 (388)
218 2mad_H Methylamine dehydrogena 99.1 1.4E-07 4.8E-12 74.1 23.3 148 25-185 27-199 (373)
219 3sjl_D Methylamine dehydrogena 99.0 1.2E-08 4E-13 79.8 15.6 157 25-244 39-212 (386)
220 2qe8_A Uncharacterized protein 99.0 5.6E-08 1.9E-12 75.6 18.3 227 19-267 17-305 (343)
221 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 3.1E-07 1.1E-11 70.2 21.6 199 17-243 69-302 (314)
222 1fwx_A Nitrous oxide reductase 98.9 4.3E-08 1.5E-12 80.0 15.3 214 28-267 99-402 (595)
223 1npe_A Nidogen, entactin; glyc 98.9 4.9E-06 1.7E-10 62.1 25.2 218 19-265 36-263 (267)
224 1yr2_A Prolyl oligopeptidase; 98.9 1.9E-07 6.6E-12 80.1 18.7 198 22-240 212-441 (741)
225 1kb0_A Quinohemoprotein alcoho 98.9 8.4E-07 2.9E-11 75.2 21.6 211 22-266 246-533 (677)
226 2p4o_A Hypothetical protein; p 98.8 9.8E-06 3.4E-10 61.8 24.9 217 19-266 32-271 (306)
227 1yiq_A Quinohemoprotein alcoho 98.8 7.7E-07 2.6E-11 75.6 20.3 214 22-266 238-531 (689)
228 3c75_H MADH, methylamine dehyd 98.8 3.7E-07 1.3E-11 72.5 17.1 151 28-240 82-248 (426)
229 3g4e_A Regucalcin; six bladed 98.8 2.5E-06 8.6E-11 64.8 20.6 186 17-228 52-261 (297)
230 3hrp_A Uncharacterized protein 98.7 5.4E-06 1.8E-10 66.0 20.2 199 24-238 176-408 (409)
231 2ece_A 462AA long hypothetical 98.6 2.2E-06 7.6E-11 67.8 16.0 183 28-267 93-335 (462)
232 2qe8_A Uncharacterized protein 98.6 2.3E-05 7.8E-10 60.8 20.4 82 15-98 63-157 (343)
233 2ghs_A AGR_C_1268P; regucalcin 98.6 6.6E-05 2.2E-09 57.8 22.5 185 18-230 89-293 (326)
234 3dr2_A Exported gluconolactona 98.6 1.5E-05 5.2E-10 60.7 18.6 189 11-231 78-298 (305)
235 3iuj_A Prolyl endopeptidase; h 98.5 1.9E-05 6.4E-10 67.4 20.4 195 22-240 178-405 (693)
236 3qqz_A Putative uncharacterize 98.5 0.00011 3.6E-09 54.2 21.4 205 14-266 22-237 (255)
237 3q7m_A Lipoprotein YFGL, BAMB; 98.5 1.1E-05 3.8E-10 63.3 17.3 189 32-250 145-346 (376)
238 2xe4_A Oligopeptidase B; hydro 98.5 1.1E-05 3.8E-10 69.4 18.4 70 20-96 175-257 (751)
239 3hxj_A Pyrrolo-quinoline quino 98.5 2.4E-05 8.3E-10 60.0 18.5 200 30-267 107-309 (330)
240 1kv9_A Type II quinohemoprotei 98.5 0.00015 5.2E-09 61.4 23.8 76 22-99 233-337 (668)
241 1fwx_A Nitrous oxide reductase 98.4 7E-05 2.4E-09 61.5 19.6 223 19-266 134-457 (595)
242 1mda_H Methylamine dehydrogena 98.4 3.6E-06 1.2E-10 65.7 10.7 104 41-189 47-163 (368)
243 3q7m_A Lipoprotein YFGL, BAMB; 98.4 4.4E-05 1.5E-09 59.9 17.1 185 30-249 103-304 (376)
244 2fp8_A Strictosidine synthase; 98.4 0.00021 7.2E-09 54.8 20.4 189 19-267 19-243 (322)
245 1kb0_A Quinohemoprotein alcoho 98.4 5.3E-05 1.8E-09 64.3 18.2 199 30-249 77-354 (677)
246 3nok_A Glutaminyl cyclase; bet 98.3 8.2E-05 2.8E-09 54.7 16.4 141 51-261 44-189 (268)
247 1flg_A Protein (quinoprotein e 98.3 0.00038 1.3E-08 58.0 22.3 77 171-266 465-542 (582)
248 3v65_B Low-density lipoprotein 98.3 0.0007 2.4E-08 53.4 24.1 215 19-261 116-338 (386)
249 2iwa_A Glutamine cyclotransfer 98.3 9.5E-05 3.2E-09 54.8 16.4 167 23-240 70-237 (266)
250 3v65_B Low-density lipoprotein 98.3 0.00075 2.6E-08 53.2 22.9 219 22-268 80-304 (386)
251 2ad6_A Methanol dehydrogenase 98.2 0.0013 4.5E-08 54.7 23.6 78 170-266 442-520 (571)
252 3mbr_X Glutamine cyclotransfer 98.2 0.00022 7.6E-09 51.9 16.6 131 51-250 10-142 (243)
253 3v64_C Agrin; beta propeller, 98.2 0.00093 3.2E-08 51.9 23.8 222 19-268 34-261 (349)
254 3hxj_A Pyrrolo-quinoline quino 98.2 2.3E-05 8E-10 60.1 12.5 203 22-266 23-228 (330)
255 1w6s_A Methanol dehydrogenase 98.2 0.0019 6.3E-08 54.0 23.2 78 170-266 451-529 (599)
256 3nol_A Glutamine cyclotransfer 98.2 0.00022 7.4E-09 52.4 15.5 144 52-265 33-183 (262)
257 2hz6_A Endoplasmic reticulum t 98.1 1.6E-06 5.4E-11 68.1 3.1 143 75-249 8-157 (369)
258 1yiq_A Quinohemoprotein alcoho 98.1 0.0002 6.8E-09 61.0 15.8 151 32-190 321-514 (689)
259 3v64_C Agrin; beta propeller, 98.0 0.0026 9E-08 49.4 27.0 216 19-261 73-295 (349)
260 1npe_A Nidogen, entactin; glyc 98.0 0.0024 8.1E-08 47.4 22.2 204 31-261 2-217 (267)
261 1n7d_A LDL receptor, low-densi 97.9 0.00039 1.3E-08 59.2 15.4 218 20-262 407-635 (699)
262 1w6s_A Methanol dehydrogenase 97.9 0.0059 2E-07 51.0 20.6 69 30-100 62-145 (599)
263 3m0c_C LDL receptor, low-densi 97.8 0.012 4E-07 50.9 26.3 216 18-260 423-651 (791)
264 3tc9_A Hypothetical hydrolase; 97.8 0.0032 1.1E-07 50.4 17.9 158 20-239 138-300 (430)
265 1kv9_A Type II quinohemoprotei 97.8 0.0026 9E-08 54.0 17.8 67 30-100 66-141 (668)
266 1k3i_A Galactose oxidase precu 97.8 0.002 6.8E-08 54.6 16.8 74 22-98 246-326 (656)
267 3sov_A LRP-6, low-density lipo 97.8 0.0071 2.4E-07 46.3 23.8 215 19-260 35-257 (318)
268 2ad6_A Methanol dehydrogenase 97.7 0.01 3.6E-07 49.3 20.4 67 30-100 62-139 (571)
269 3p5b_L Low density lipoprotein 97.7 0.01 3.4E-07 47.0 28.2 219 18-261 111-340 (400)
270 1k3i_A Galactose oxidase precu 97.7 0.0046 1.6E-07 52.4 18.1 75 23-100 190-279 (656)
271 1ijq_A LDL receptor, low-densi 97.7 0.0091 3.1E-07 45.6 25.6 216 19-260 30-257 (316)
272 1n7d_A LDL receptor, low-densi 97.7 0.0025 8.4E-08 54.4 15.8 208 39-268 385-600 (699)
273 3m0c_C LDL receptor, low-densi 97.7 0.024 8.1E-07 49.0 23.9 214 32-268 397-618 (791)
274 2fp8_A Strictosidine synthase; 97.7 0.011 3.8E-07 45.1 19.2 72 20-96 127-217 (322)
275 3p5b_L Low density lipoprotein 97.6 0.015 5.2E-07 46.0 24.5 214 32-268 85-306 (400)
276 3sov_A LRP-6, low-density lipo 97.6 0.015 5E-07 44.5 22.2 204 39-268 12-224 (318)
277 2xe4_A Oligopeptidase B; hydro 97.6 0.0061 2.1E-07 52.5 17.0 138 64-262 175-329 (751)
278 1ijq_A LDL receptor, low-densi 97.5 0.016 5.6E-07 44.2 24.5 209 32-268 3-224 (316)
279 3amr_A 3-phytase; beta-propell 97.5 0.022 7.7E-07 43.8 18.8 60 30-94 40-107 (355)
280 4a2l_A BT_4663, two-component 97.4 0.048 1.6E-06 47.3 25.4 229 18-266 214-465 (795)
281 3sre_A PON1, serum paraoxonase 97.4 0.025 8.4E-07 43.9 17.5 167 14-181 45-252 (355)
282 1flg_A Protein (quinoprotein e 97.4 0.037 1.3E-06 46.1 19.1 64 32-99 70-140 (582)
283 4a2l_A BT_4663, two-component 97.3 0.074 2.5E-06 46.1 24.2 222 21-265 175-418 (795)
284 3kya_A Putative phosphatase; s 97.3 0.053 1.8E-06 44.0 18.3 65 20-86 140-214 (496)
285 4a0p_A LRP6, LRP-6, low-densit 97.2 0.073 2.5E-06 44.8 23.6 210 32-268 8-223 (628)
286 3s94_A LRP-6, low-density lipo 97.2 0.087 3E-06 44.3 21.3 186 19-267 40-228 (619)
287 3tc9_A Hypothetical hydrolase; 97.1 0.027 9.3E-07 45.0 15.0 93 154-265 184-282 (430)
288 2p9w_A MAL S 1 allergenic prot 97.0 0.066 2.2E-06 40.9 16.8 83 14-98 8-115 (334)
289 4a0p_A LRP6, LRP-6, low-densit 97.0 0.12 4.3E-06 43.4 25.5 211 19-258 37-254 (628)
290 4hw6_A Hypothetical protein, I 96.9 0.11 3.9E-06 41.5 22.1 158 20-239 140-303 (433)
291 3kya_A Putative phosphatase; s 96.8 0.04 1.4E-06 44.7 13.0 57 207-268 249-327 (496)
292 3pbp_A Nucleoporin NUP82; beta 96.7 0.06 2.1E-06 42.5 13.3 76 20-96 67-159 (452)
293 3ei3_A DNA damage-binding prot 96.7 0.34 1.2E-05 43.9 22.7 76 18-94 553-635 (1158)
294 3pbp_A Nucleoporin NUP82; beta 96.5 0.083 2.9E-06 41.8 12.6 100 154-266 71-193 (452)
295 3amr_A 3-phytase; beta-propell 96.4 0.24 8.1E-06 38.2 18.3 70 19-93 128-208 (355)
296 3s94_A LRP-6, low-density lipo 96.3 0.4 1.4E-05 40.4 22.8 75 19-96 349-424 (619)
297 2ism_A Putative oxidoreductase 96.3 0.27 9.2E-06 38.1 21.6 74 18-96 30-115 (352)
298 3qqz_A Putative uncharacterize 96.1 0.25 8.7E-06 36.3 17.8 74 19-94 70-150 (255)
299 3v9f_A Two-component system se 96.1 0.61 2.1E-05 40.4 24.2 225 18-267 257-509 (781)
300 3sre_A PON1, serum paraoxonase 96.0 0.16 5.6E-06 39.3 12.1 29 65-95 52-92 (355)
301 2p4o_A Hypothetical protein; p 95.9 0.36 1.2E-05 36.3 21.9 75 19-96 72-148 (306)
302 4hw6_A Hypothetical protein, I 95.5 0.72 2.4E-05 36.9 18.6 72 21-94 230-303 (433)
303 2p9w_A MAL S 1 allergenic prot 95.4 0.16 5.6E-06 38.7 9.7 121 20-181 64-215 (334)
304 3a9g_A Putative uncharacterize 95.2 0.78 2.7E-05 35.5 20.9 75 18-96 28-115 (354)
305 3v9f_A Two-component system se 95.0 1.6 5.3E-05 37.8 23.4 224 18-266 312-552 (781)
306 2be1_A Serine/threonine-protei 94.4 0.18 6.2E-06 38.7 7.7 122 77-250 11-139 (339)
307 1cru_A Protein (soluble quinop 93.6 2.3 8E-05 34.2 23.0 62 18-81 26-96 (454)
308 1cru_A Protein (soluble quinop 93.4 2.5 8.5E-05 34.0 15.6 32 63-96 27-58 (454)
309 4gq2_M Nucleoporin NUP120; bet 93.4 3.7 0.00013 36.6 15.0 39 19-57 236-274 (950)
310 2xzh_A Clathrin heavy chain 1; 93.2 2.2 7.6E-05 32.7 14.8 147 38-253 47-200 (365)
311 2xzh_A Clathrin heavy chain 1; 92.6 2.7 9.4E-05 32.2 26.8 212 26-255 74-304 (365)
312 2xn4_A Kelch-like protein 2; s 92.5 2.5 8.6E-05 31.5 17.9 67 29-99 61-137 (302)
313 2vpj_A Kelch-like protein 12; 92.4 2.5 8.7E-05 31.4 18.0 67 29-99 62-141 (301)
314 1bpo_A Protein (clathrin); cla 92.3 3.7 0.00013 32.9 16.6 148 38-254 46-200 (494)
315 2be1_A Serine/threonine-protei 92.3 0.71 2.4E-05 35.5 8.0 66 31-97 11-78 (339)
316 3das_A Putative oxidoreductase 92.2 3.2 0.00011 32.0 17.7 32 63-96 32-63 (347)
317 2xbg_A YCF48-like protein; pho 91.7 3.4 0.00012 31.4 18.2 69 17-92 161-231 (327)
318 3a9g_A Putative uncharacterize 91.5 3.9 0.00013 31.6 15.8 27 63-92 29-55 (354)
319 4asc_A Kelch repeat and BTB do 91.5 3.5 0.00012 31.0 14.0 66 29-98 98-177 (315)
320 2ism_A Putative oxidoreductase 91.2 4.1 0.00014 31.4 14.0 27 63-92 31-57 (352)
321 3ii7_A Kelch-like protein 7; p 91.2 3.6 0.00012 30.7 19.8 67 29-99 55-131 (306)
322 2g8s_A Glucose/sorbosone dehyd 90.6 4.7 0.00016 31.1 16.9 28 64-93 19-46 (353)
323 1zgk_A Kelch-like ECH-associat 89.6 5.2 0.00018 29.9 14.1 66 29-98 70-149 (308)
324 3ei3_A DNA damage-binding prot 89.5 12 0.00043 34.1 23.8 64 32-97 525-593 (1158)
325 1bpo_A Protein (clathrin); cla 89.3 7.3 0.00025 31.2 24.7 211 25-255 72-303 (494)
326 3das_A Putative oxidoreductase 89.0 6.5 0.00022 30.3 23.6 80 14-95 27-116 (347)
327 2woz_A Kelch repeat and BTB do 88.9 6 0.0002 29.7 13.3 66 29-98 109-187 (318)
328 3sbq_A Nitrous-oxide reductase 88.7 4.2 0.00014 33.7 9.6 78 154-240 328-408 (638)
329 1zgk_A Kelch-like ECH-associat 88.5 6.3 0.00021 29.5 15.0 66 29-98 121-196 (308)
330 2xbg_A YCF48-like protein; pho 87.4 7.9 0.00027 29.4 21.8 63 19-88 122-185 (327)
331 3f7f_A Nucleoporin NUP120; nuc 87.3 11 0.00039 32.2 11.7 26 75-100 230-255 (729)
332 1xi4_A Clathrin heavy chain; a 87.2 20 0.00068 33.7 14.8 62 26-95 73-134 (1630)
333 1tl2_A L10, protein (tachylect 86.6 1.5 5E-05 31.5 5.3 91 154-266 46-148 (236)
334 4gq2_M Nucleoporin NUP120; bet 86.5 6 0.0002 35.3 10.3 35 64-100 237-271 (950)
335 1xi4_A Clathrin heavy chain; a 86.2 14 0.00049 34.6 12.3 136 39-189 47-195 (1630)
336 3s25_A Hypothetical 7-bladed b 85.8 9.5 0.00032 28.7 18.1 31 154-185 150-180 (302)
337 2wg3_C Hedgehog-interacting pr 85.5 13 0.00045 30.0 12.7 54 19-72 14-78 (463)
338 1tl2_A L10, protein (tachylect 84.8 2.1 7.2E-05 30.7 5.4 69 19-93 41-114 (236)
339 2g8s_A Glucose/sorbosone dehyd 83.6 13 0.00045 28.5 21.1 53 18-72 17-75 (353)
340 2vpj_A Kelch-like protein 12; 83.0 12 0.00041 27.7 19.4 65 29-97 14-89 (301)
341 4fhn_B Nucleoporin NUP120; pro 81.9 1.4 4.7E-05 40.1 4.4 38 20-57 239-276 (1139)
342 2uvk_A YJHT; unknown function, 81.1 16 0.00056 27.8 16.8 53 29-85 65-128 (357)
343 3zwu_A Alkaline phosphatase PH 80.7 9.6 0.00033 31.8 8.6 60 20-82 477-548 (592)
344 3f7f_A Nucleoporin NUP120; nuc 80.1 3.7 0.00013 35.0 6.0 38 19-58 222-259 (729)
345 3sbq_A Nitrous-oxide reductase 79.0 11 0.00037 31.3 8.1 71 20-95 324-408 (638)
346 2xn4_A Kelch-like protein 2; s 76.5 21 0.00071 26.4 17.8 66 30-99 16-90 (302)
347 2woz_A Kelch repeat and BTB do 76.0 22 0.00076 26.5 14.6 67 28-98 55-139 (318)
348 2wg3_C Hedgehog-interacting pr 74.6 27 0.00091 28.2 9.4 25 154-180 19-44 (463)
349 4a9v_A PHOX; hydrolase, beta-p 74.0 30 0.001 28.9 9.4 61 19-82 476-548 (592)
350 3al9_A Plexin-A2; beta-propell 69.3 16 0.00053 30.2 7.0 68 20-89 401-475 (539)
351 3q6k_A 43.2 kDa salivary prote 69.3 39 0.0013 26.4 10.6 84 172-263 123-230 (381)
352 4fhn_B Nucleoporin NUP120; pro 69.0 2.8 9.7E-05 38.1 2.9 35 64-100 239-273 (1139)
353 4gz8_A Semaphorin-3A; multi-do 68.5 55 0.0019 27.9 10.3 69 20-90 413-495 (667)
354 1q47_A Semaphorin 3A; beta pro 67.3 43 0.0015 27.3 9.1 69 20-90 405-487 (495)
355 2zwa_A Leucine carboxyl methyl 65.4 65 0.0022 27.5 19.5 71 28-100 396-482 (695)
356 3ii7_A Kelch-like protein 7; p 62.5 44 0.0015 24.6 17.6 63 32-98 14-82 (306)
357 4a9v_A PHOX; hydrolase, beta-p 58.4 28 0.00094 29.0 6.4 57 206-267 477-545 (592)
358 3ol2_B Plexin-B1; beta-propell 50.3 55 0.0019 26.9 7.0 68 20-90 388-461 (528)
359 3ott_A Two-component system se 49.7 1.2E+02 0.0043 25.9 22.4 72 18-98 21-94 (758)
360 3oky_B Putative uncharacterize 46.2 1.1E+02 0.0038 25.4 8.2 80 9-90 393-495 (565)
361 3oky_A Plexin-A2; transmembran 43.9 74 0.0025 27.2 7.0 68 21-90 401-475 (681)
362 3ott_A Two-component system se 36.0 2.1E+02 0.0071 24.6 23.3 71 18-97 62-132 (758)
363 3nvq_A Semaphorin-7A; beta-pro 35.8 1.7E+02 0.0057 24.6 7.7 69 20-90 363-444 (590)
364 2zwa_A Leucine carboxyl methyl 35.0 1.9E+02 0.0065 24.7 8.3 68 28-97 499-579 (695)
365 4fww_A Macrophage-stimulating 34.7 1.3E+02 0.0045 24.7 7.1 71 17-90 403-479 (527)
366 4hvt_A Ritya.17583.B, post-pro 34.2 2.3E+02 0.0078 24.4 18.9 74 21-97 131-227 (711)
367 3zwu_A Alkaline phosphatase PH 31.4 2.3E+02 0.008 23.8 8.4 50 154-216 481-541 (592)
368 4asc_A Kelch repeat and BTB do 30.3 1.6E+02 0.0056 21.6 21.3 63 32-99 7-80 (315)
369 3c12_A FLGD, flagellar protein 25.4 1.2E+02 0.0042 19.4 4.5 17 172-189 41-57 (138)
370 1uhe_A Aspartate 1-decarboxyla 23.7 1.2E+02 0.004 18.3 3.6 18 40-57 17-34 (97)
371 1olz_A Semaphorin 4D; developm 23.6 3.5E+02 0.012 23.1 8.6 69 20-90 398-477 (663)
372 3q6k_A 43.2 kDa salivary prote 23.5 2.7E+02 0.0091 21.8 18.5 82 19-100 87-195 (381)
373 3mwp_A Nucleoprotein; structur 20.9 18 0.00061 28.6 -0.3 17 226-242 162-178 (577)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.6e-38 Score=242.08 Aligned_cols=236 Identities=13% Similarity=0.160 Sum_probs=193.0
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+..++|++|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|. .+|.+++|+| ++++|++++.|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE--TPVRAGKFIA--RKNWIIVGSDDFRI 79 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEG--GGTEEEEEETTSEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC--CcEEEEEEeC--CCCEEEEECCCCEE
Confidence 5678899999999999999999999999999999999999999999999888 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
++||+.+++.. ..+..+......+.+...... ......+.+.+|++..+......+.+|.. ++|+|++..+
T Consensus 80 ~vwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 80 RVFNYNTGEKV----VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEETTTCCEE----EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred EEEECCCCcEE----EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence 99999998653 356666666655555443332 23344567788999988777777888877 8999955445
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
++ +|+.|++|++||++++.....+.. +| ...+..+. |.|.. ++. +|++|+.|++|++||+++ ++
T Consensus 156 l~-sgs~D~~v~iwd~~~~~~~~~~~~-------~~----~~~v~~~~-~~~~~-~~~-~l~s~s~D~~i~iWd~~~-~~ 219 (304)
T 2ynn_A 156 FA-SGCLDRTVKVWSLGQSTPNFTLTT-------GQ----ERGVNYVD-YYPLP-DKP-YMITASDDLTIKIWDYQT-KS 219 (304)
T ss_dssp EE-EEETTSEEEEEETTCSSCSEEEEC-------CC----TTCEEEEE-ECCST-TCC-EEEEEETTSEEEEEETTT-TE
T ss_pred EE-EEeCCCeEEEEECCCCCccceecc-------CC----cCcEEEEE-EEEcC-CCC-EEEEEcCCCeEEEEeCCC-Cc
Confidence 54 677899999999998887776663 33 23455666 77742 345 999999999999999999 89
Q ss_pred ceeeeeccCCCeeEEEeecCCCcee
Q 024245 244 PLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 244 ~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
++..+.+|...|.+++|+|++.+|.
T Consensus 220 ~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 220 CVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEE
T ss_pred cceeeCCCCCCEEEEEECCCCCEEE
Confidence 9999999999999999999997653
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=240.28 Aligned_cols=224 Identities=12% Similarity=0.117 Sum_probs=174.1
Q ss_pred ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE----eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
..|+..|++++|+|++ .|++|+.||+|+|||+.+++.+..+ .+|. +.|.+++|+| ++++|++++.|++|++
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~--~~V~~v~~sp--dg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHD--DIVSTVSVLS--SGTQAVSGSKDICIKV 153 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCS--SCEEEEEECT--TSSEEEEEETTSCEEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCC--CCEEEEEECC--CCCEEEEEeCCCeEEE
Confidence 3467889999999985 6889999999999999988765443 3566 6799999999 9999999999999999
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeeeccC-CCCC----eEecCCCCeE
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDSL-CDSK----DDVPAEGPKY 163 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~s~~~~~~ 163 (270)
||+++++... .+.++......+.+..... .......+.+.+||++.++....... .+.. ++|+|++..+
T Consensus 154 wd~~~~~~~~----~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 154 WDLAQQVVLS----SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229 (344)
T ss_dssp EETTTTEEEE----EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred EECCCCcEEE----EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence 9999987643 6666666655555544332 23344467788999998876654332 2222 8899987777
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
++ +|+.|++|+|||+++++++.++. +|. ..+.+++ |+|+ +..+|++|+.|++|+|||+++ ++
T Consensus 230 l~-sg~~dg~v~~wd~~~~~~~~~~~--------~h~----~~v~~v~-fsp~---g~~~lasgs~D~~i~vwd~~~-~~ 291 (344)
T 4gqb_B 230 FV-FGDENGTVSLVDTKSTSCVLSSA--------VHS----QCVTGLV-FSPH---SVPFLASLSEDCSLAVLDSSL-SE 291 (344)
T ss_dssp EE-EEETTSEEEEEESCC--CCEEEE--------CCS----SCEEEEE-ECSS---SSCCEEEEETTSCEEEECTTC-CE
T ss_pred eE-EeccCCcEEEEECCCCcEEEEEc--------CCC----CCEEEEE-EccC---CCeEEEEEeCCCeEEEEECCC-Cc
Confidence 65 67789999999999999999998 774 4678888 9995 322899999999999999997 55
Q ss_pred ceeeeeccCCCeeEEEeecCCCc
Q 024245 244 PLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 244 ~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
+ ..+.+|.+.|++++|+|++..
T Consensus 292 ~-~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 292 L-FRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp E-EEECCCSSCEEEEEECSSSTT
T ss_pred E-EEEcCCCCCEEEEEEeCCCCe
Confidence 4 467899999999999999875
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-36 Score=243.15 Aligned_cols=234 Identities=18% Similarity=0.249 Sum_probs=191.0
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.....+.+|.+.|++++|+|++.+|++|+.||.|+|||+.+++....+.+|. ..|.+++|+| ++++|++|+.|++|
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~--~~V~~v~~~~--~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSVQDISFDH--SGKLLASCSADMTI 174 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS--SCEEEEEECT--TSSEEEEEETTSCC
T ss_pred CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccC--CcEEEEEEcC--CCCEEEEEeCCCeE
Confidence 3467789999999999999999999999999999999999999999999998 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
++||+.++++.. .+..+......+.+...... ......+...+|++.++..+. .+.+|.. +.++|++..+
T Consensus 175 ~iwd~~~~~~~~----~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 175 KLWDFQGFECIR----TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQDGTLI 249 (410)
T ss_dssp CEEETTSSCEEE----CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEEeCCCCceeE----EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeCCCccEEEEEECCCCCEE
Confidence 999998876543 55555555555554443322 233345667789998887654 4556665 8899999754
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC-----------------CCceEEEE
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-----------------QGFVNVLA 226 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~-----------------~g~~~l~~ 226 (270)
+ +|+.|++|++||++++++...+. +|. ..+.++. |+|+.. +|. +|++
T Consensus 250 ~--s~s~D~~v~vwd~~~~~~~~~~~--------~h~----~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~s 313 (410)
T 1vyh_C 250 A--SCSNDQTVRVWVVATKECKAELR--------EHR----HVVECIS-WAPESSYSSISEATGSETKKSGKPGP-FLLS 313 (410)
T ss_dssp E--EEETTSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-ECCSCGGGGGGGCCSCC-------CC-EEEE
T ss_pred E--EEcCCCeEEEEECCCCceeeEec--------CCC----ceEEEEE-EcCcccccchhhhccccccccCCCCC-EEEE
Confidence 4 56679999999999999988887 663 4677787 988521 144 8999
Q ss_pred ecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 227 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
|+.||.|++||+++ ++++..+.+|...|++++|+|+|.+|-
T Consensus 314 gs~D~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g~~l~ 354 (410)
T 1vyh_C 314 GSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFIL 354 (410)
T ss_dssp EETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSCEE
T ss_pred EeCCCeEEEEECCC-CceEEEEECCCCcEEEEEEcCCCCEEE
Confidence 99999999999998 889999999999999999999998763
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.3e-36 Score=234.09 Aligned_cols=236 Identities=14% Similarity=0.220 Sum_probs=187.4
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+..+++++|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|. ..|.+++|+| ++++|++++.|+.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~s~~~d~~ 120 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAP--SGNYVACGGLDNI 120 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS--SCEEEEEECT--TSSEEEEEETTCE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCC--ccEEEEEECC--CCCEEEEEeCCCe
Confidence 35677899999999999999999999999999999999999999999999888 6699999999 9999999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
|++||+.+..........+..+......+.+............+...+|++.+++.+. .+.+|.. ++|+|++..+
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEE-EEcCCCCceEEEEECCCCCEE
Confidence 9999998764322122334445444444444333334444556778889998877654 4566766 8999999754
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
+ +|+.|+.|++||+++++++..+. +|. ..+.+++ |+|+ +. +|++|+.||.|++||+++ ++
T Consensus 200 ~--sg~~d~~v~~wd~~~~~~~~~~~--------~h~----~~v~~v~-~~p~---~~-~l~s~s~d~~v~iwd~~~-~~ 259 (340)
T 1got_B 200 V--SGACDASAKLWDVREGMCRQTFT--------GHE----SDINAIC-FFPN---GN-AFATGSDDATCRLFDLRA-DQ 259 (340)
T ss_dssp E--EEETTSCEEEEETTTCSEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-TE
T ss_pred E--EEeCCCcEEEEECCCCeeEEEEc--------CCc----CCEEEEE-EcCC---CC-EEEEEcCCCcEEEEECCC-Cc
Confidence 3 57779999999999999999888 673 4678887 9995 44 999999999999999998 66
Q ss_pred ceeeeec--cCCCeeEEEeecCCCcee
Q 024245 244 PLTAMKV--HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 244 ~~~~~~~--~~~~v~~~~~s~~g~~ls 268 (270)
++..+.. +...|++++|+|+|.+|.
T Consensus 260 ~~~~~~~~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 260 ELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred EEEEEccCCcccceEEEEECCCCCEEE
Confidence 6666542 335799999999998764
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=231.91 Aligned_cols=230 Identities=14% Similarity=0.215 Sum_probs=187.2
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
+...+.+|...|.+++|++++.++++++.|+.|++||+.+++.+..+..+. ..+.+++|+| ++++|++++.|+.|+
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~--~~~~~~~~sp--dg~~l~~g~~dg~v~ 147 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP--VDAWTLAFSP--DSQYLATGTHVGKVN 147 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCT--TCCCCEEECT--TSSEEEEECTTSEEE
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC--ccEEEEEECC--CCCEEEEEcCCCcEE
Confidence 345688999999999999999999999999999999999999999998877 5599999999 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~ 164 (270)
+||+++++.. ..+..+......+.+...... ......+...+|++.+++.+. .+.+|.. ++|+|+++.++
T Consensus 148 i~~~~~~~~~----~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 148 IFGVESGKKE----YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH-TLEGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp EEETTTCSEE----EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCCCEEEECTTSCEEE
T ss_pred EEEcCCCcee----EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-EEcccCCceeEEEEcCCCCEEE
Confidence 9999988643 244444443433333332222 223335667889998876654 4556655 89999998554
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
+++.|+.|++||+++++....+. +|. ..+.+++ |+|+ ++ +|++|+.|++|++||+++ +++
T Consensus 223 --s~s~dg~i~iwd~~~~~~~~~~~--------~h~----~~v~~~~-~sp~---~~-~l~s~s~D~~v~iwd~~~-~~~ 282 (321)
T 3ow8_A 223 --TASDDGYIKIYDVQHANLAGTLS--------GHA----SWVLNVA-FCPD---DT-HFVSSSSDKSVKVWDVGT-RTC 282 (321)
T ss_dssp --EECTTSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-TEE
T ss_pred --EEcCCCeEEEEECCCcceeEEEc--------CCC----CceEEEE-ECCC---CC-EEEEEeCCCcEEEEeCCC-CEE
Confidence 67789999999999999988888 673 4678888 9995 44 999999999999999998 899
Q ss_pred eeeeeccCCCeeEEEeecCCCcee
Q 024245 245 LTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 245 ~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+..+.+|...|++++|+|+|.+|.
T Consensus 283 ~~~~~~h~~~v~~v~~s~~g~~l~ 306 (321)
T 3ow8_A 283 VHTFFDHQDQVWGVKYNGNGSKIV 306 (321)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEcCCCCcEEEEEECCCCCEEE
Confidence 999999999999999999998753
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-36 Score=240.61 Aligned_cols=232 Identities=17% Similarity=0.291 Sum_probs=190.3
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
++++++++|.+.|++++|+|++++|++|+.|++|++||+.+++++..+.+|. ..|.+++|+| ++++|++++.|++|
T Consensus 141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~--~~V~~v~~~p--~~~~l~s~s~D~~i 216 (410)
T 1vyh_C 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD--HNVSSVSIMP--NGDHIVSASRDKTI 216 (410)
T ss_dssp CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS--SCEEEEEECS--SSSEEEEEETTSEE
T ss_pred cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--CCEEEEEEeC--CCCEEEEEeCCCeE
Confidence 5678899999999999999999999999999999999999999999999998 5699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC--
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP-- 161 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~-- 161 (270)
++||++++.+.. .+..+......+.+...... ......+...+|++...+... .+.+|.. ++|+|++.
T Consensus 217 ~~wd~~~~~~~~----~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 217 KMWEVQTGYCVK----TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA-ELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp EEEETTTCCEEE----EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECCSCGGG
T ss_pred EEEECCCCcEEE----EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee-EecCCCceEEEEEEcCccccc
Confidence 999999886543 55566555555544433322 233345677889998776554 4455655 78888632
Q ss_pred -----------------eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245 162 -----------------KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (270)
Q Consensus 162 -----------------~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (270)
.+++ +|+.|+.|++||+++++++..+. +|. ..+.++. |+|+ |+ +|
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~-sgs~D~~i~iwd~~~~~~~~~~~--------~h~----~~v~~v~-~~~~---g~-~l 353 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLV--------GHD----NWVRGVL-FHSG---GK-FI 353 (410)
T ss_dssp GGGGCCSCC-------CCEEE-EEETTSEEEEEETTTTEEEEEEE--------CCS----SCEEEEE-ECSS---SS-CE
T ss_pred chhhhccccccccCCCCCEEE-EEeCCCeEEEEECCCCceEEEEE--------CCC----CcEEEEE-EcCC---CC-EE
Confidence 2343 67789999999999999999998 774 3677887 9985 55 89
Q ss_pred EEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 225 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
++|+.||.|++||+++ ++++..+.+|...|++++|+|++.+|.
T Consensus 354 ~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 354 LSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVV 396 (410)
T ss_dssp EEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred EEEeCCCeEEEEECCC-CceEEEEcCCCCcEEEEEEcCCCCEEE
Confidence 9999999999999998 888999999999999999999998763
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.9e-36 Score=231.30 Aligned_cols=230 Identities=17% Similarity=0.168 Sum_probs=185.2
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
++++.+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|. +.|.+++|+| ++++|++++.|++|
T Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~sgs~D~~v 121 (304)
T 2ynn_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHP--TKPYVLSGSDDLTV 121 (304)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS--SSSEEEEEETTSCE
T ss_pred ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCC--CcEEEEEEcC--CCCEEEEECCCCeE
Confidence 5677889999999999999999999999999999999999999999999998 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccC--CccceecCCCCceEEEeccCceeeeccCCCCC----eEecC--CC
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--EG 160 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~--~~ 160 (270)
++||++++... ...+..+......+.+... .........+.+.+|++...........++.. +.|+| ++
T Consensus 122 ~lWd~~~~~~~---~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (304)
T 2ynn_A 122 KLWNWENNWAL---EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198 (304)
T ss_dssp EEEEGGGTTEE---EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTC
T ss_pred EEEECCCCcch---hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCC
Confidence 99999876421 2234455555554544432 12233444567788998777655544445543 67776 45
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
.++ + +++.|++|++||+++++++.++. +|. ..+.+++ |+|+ ++ +|++|+.||+|++||+++
T Consensus 199 ~~l-~-s~s~D~~i~iWd~~~~~~~~~~~--------~h~----~~v~~~~-~~p~---~~-~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 199 PYM-I-TASDDLTIKIWDYQTKSCVATLE--------GHM----SNVSFAV-FHPT---LP-IIISGSEDGTLKIWNSST 259 (304)
T ss_dssp CEE-E-EEETTSEEEEEETTTTEEEEEEE--------CCS----SCEEEEE-ECSS---SS-EEEEEETTSCEEEEETTT
T ss_pred CEE-E-EEcCCCeEEEEeCCCCccceeeC--------CCC----CCEEEEE-ECCC---CC-EEEEEcCCCeEEEEECCC
Confidence 433 3 67789999999999999999998 774 3577787 9995 44 999999999999999999
Q ss_pred CCcceeeeeccCCCeeEEEeecCCC
Q 024245 241 PGIPLTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~s~~g~ 265 (270)
++++..+..|...+++++|+|++.
T Consensus 260 -~~~~~~~~~~~~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 260 -YKVEKTLNVGLERSWCIATHPTGR 283 (304)
T ss_dssp -CCEEEEECCSSSSEEEEEECTTCG
T ss_pred -CceeeeccCCCccEEEEEECCCCC
Confidence 889999999999999999999875
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-35 Score=231.78 Aligned_cols=234 Identities=17% Similarity=0.247 Sum_probs=183.4
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE-------------------------------
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS------------------------------- 56 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------------------- 56 (270)
.+..+++++|.+.|++++|+|++++|++|+.||.|+|||..+++....+
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 3567889999999999999999999999999999999998766544333
Q ss_pred -----------------eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeec
Q 024245 57 -----------------WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119 (270)
Q Consensus 57 -----------------~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (270)
..|. ..|.+++|+| ++..|++++.|++|++||+++++... .+..+......+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~----~~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHT--NYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQ----SFHGHGADVLCLDLA 205 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECS--SCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEE----EEECCSSCEEEEEEC
T ss_pred EEeccccccccccceeeeccC--CcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEE----EEcCCCCCeEEEEEE
Confidence 2344 5588899998 88899999999999999999886533 566666655555555
Q ss_pred cCCc---cceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc
Q 024245 120 KEPY---ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (270)
Q Consensus 120 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 192 (270)
.... .......+...+||+.+++.+. .+.+|.. ++|+|++..++ +++.|++|++||++.++.+..+..
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~v~lwd~~~~~~~~~~~~-- 280 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQ-AFETHESDVNSVRYYPSGDAFA--SGSDDATCRLYDLRADREVAIYSK-- 280 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEECC--
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcEEE-EecCCCCCeEEEEEeCCCCEEE--EEeCCCeEEEEECCCCcEEEEEcC--
Confidence 4432 2333445677889998887654 4566665 89999997544 567799999999998887776652
Q ss_pred CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+. ....+.++. |+|+ |+ +|++|+.|+.|++||+.+ ++++..+.+|...|++++|+|||.+|.
T Consensus 281 ------~~--~~~~~~~~~-~s~~---g~-~l~~g~~d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 281 ------ES--IIFGASSVD-FSLS---GR-LLFAGYNDYTINVWDVLK-GSRVSILFGHENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp ------TT--CCSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred ------CC--cccceeEEE-EeCC---CC-EEEEEECCCcEEEEECCC-CceEEEEECCCCcEEEEEECCCCCEEE
Confidence 21 123466777 9995 55 999999999999999998 788899999999999999999998864
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-36 Score=238.05 Aligned_cols=247 Identities=13% Similarity=0.210 Sum_probs=179.7
Q ss_pred CCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 5 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
|..+.+.++|++|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|. ..|.+++|+| ++++|++++.
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~--~~v~~~~~s~--~g~~las~~~ 128 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC--PWVMECAFAP--NGQSVACGGL 128 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC--TTCCCCEECT--TSSEEEECCS
T ss_pred cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC--CCEEEEEECC--CCCEEEEeeC
Confidence 34456778899999999999999999999999999999999999999999999888 5599999999 8888999888
Q ss_pred CCcEEEEEccCCccCC---CCcccee------------------------------------------------cccceE
Q 024245 85 DGTVKCWDIENGGLSS---NPSLTIK------------------------------------------------TNSYHF 113 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~---~~~~~~~------------------------------------------------~~~~~~ 113 (270)
|+.+++||+.+..... .....+. .+....
T Consensus 129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 9889999876421100 0000000 000111
Q ss_pred EEEeecc--CCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeee
Q 024245 114 CKLSLVK--EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187 (270)
Q Consensus 114 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 187 (270)
..+.+.. ..........+.+.+||++........+.+|.. ++|+|++..++ +|+.|++|++||+++++.+..
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG--TGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEE--EECSSSCEEEEETTTTEEEEE
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEE--EEcCCCeEEEEECCCCcEEEE
Confidence 1111111 011122333556778998765555556777776 89999998554 677899999999999998888
Q ss_pred eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee----eccCCCeeEEEeecC
Q 024245 188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM----KVHLEPGLECSMWRN 263 (270)
Q Consensus 188 ~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~s~~ 263 (270)
+.... .........+.+++ |+|+ |+ +|++|+.||.|++||+.+ ++.+..+ .+|...|++++|+||
T Consensus 287 ~~~~~-----~~~~~~~~~v~~~~-~s~~---g~-~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v~~l~~s~d 355 (380)
T 3iz6_a 287 YNREP-----DRNDNELPIVTSVA-FSIS---GR-LLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRISCLGLSSD 355 (380)
T ss_dssp ECCCC-----SSSCCSSCSCSEEE-ECSS---SS-EEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred ecccc-----cccccccCceEEEE-ECCC---CC-EEEEEECCCCEEEEECCC-CceEEEEecccCCCCCceEEEEECCC
Confidence 76310 01111223477887 9995 55 999999999999999988 6666666 689999999999999
Q ss_pred CCcee
Q 024245 264 PITMS 268 (270)
Q Consensus 264 g~~ls 268 (270)
|.+|.
T Consensus 356 g~~l~ 360 (380)
T 3iz6_a 356 GSALC 360 (380)
T ss_dssp SSEEE
T ss_pred CCEEE
Confidence 98764
No 10
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.5e-35 Score=224.63 Aligned_cols=239 Identities=14% Similarity=0.122 Sum_probs=175.9
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC--CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.. .+.+..+.+|. ++|.+++|++..++++|++++.|++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~--~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc--CCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 346789999999999999999999999999999999974 36778888998 66999999862237899999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccC---CccceecCCCCceEEEeccCcee-eeccCCCCC----eEecCCC
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE---PYANAKQANEPKDCYEREVGETV-DTDSLCDSK----DDVPAEG 160 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~s~~~ 160 (270)
++||+++++... +..+..+......+.+... .........+...+|++...... ...+.+|.. ++|+|++
T Consensus 80 ~iWd~~~~~~~~--~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 80 MIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEEBSSSCBCC--CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred EEEEcCCCceEE--EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 999999875322 3344444444444444432 12233344566778888765322 334556665 8899873
Q ss_pred ------------CeEEEEecCCCceEEEEeCCCcc----eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245 161 ------------PKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (270)
Q Consensus 161 ------------~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (270)
..+++ +|+.|++|+|||+++++ ....+. +| ...+.+++ |+|+...+. +|
T Consensus 158 ~~~~~~~~~~~~~~~l~-sgs~D~~v~lwd~~~~~~~~~~~~~l~--------~H----~~~V~~v~-~sp~~~~~~-~l 222 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS-YM 222 (297)
T ss_dssp ------------CCEEE-EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE-EE
T ss_pred ccccccCCCCCCcceEE-EEcCCCcEEEEEEcCCCceEEEEEEec--------CC----CCceEEEE-ECCCCCCce-EE
Confidence 13444 67789999999998766 455666 67 34688888 999632245 99
Q ss_pred EEecCCCcEEEEEcCCCCc--ceeee--eccCCCeeEEEeecCCCcee
Q 024245 225 LAGYEDGSILVWDIRNPGI--PLTAM--KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 225 ~~~~~dg~i~vwd~~~~~~--~~~~~--~~~~~~v~~~~~s~~g~~ls 268 (270)
++|+.|++|++||+++... ....+ ..|...|.+++|+|+|.+|.
T Consensus 223 as~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~la 270 (297)
T 2pm7_B 223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 270 (297)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred EEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEE
Confidence 9999999999999987322 12233 46788999999999998874
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=227.55 Aligned_cols=229 Identities=17% Similarity=0.224 Sum_probs=176.8
Q ss_pred CcccccccccccEEEEEEeCC----CCEEEEecCCCcEEEEeCCCCce--eEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 9 DPVAVLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
.+++.+++|.+.|++++|+|+ +.+|++|+.|++|+|||+..++. ...+.+|. ..|.+++|++ ++.+++++
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~--~~v~~~~~~~--~~~~l~s~ 98 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ--LGVVSVDISH--TLPIAASS 98 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECS--SSSEEEEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCC--CCEEEEEECC--CCCEEEEE
Confidence 345677899999999999984 56999999999999999987654 34567777 6699999999 98999999
Q ss_pred eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceec---CCCCceEEEeccCceeeeccCCCCC----eE
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ---ANEPKDCYEREVGETVDTDSLCDSK----DD 155 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 155 (270)
+.|++|++||+.+++... .+..+......+.+ .+....+. ..+...+|++..++.... +..+.. ++
T Consensus 99 s~D~~i~lWd~~~~~~~~----~~~~~~~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~-~~~~~~~v~~~~ 171 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIK----SIDAGPVDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYS-LDTRGKFILSIA 171 (321)
T ss_dssp ETTSEEEEEETTTTEEEE----EEECCTTCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEE-EECSSSCEEEEE
T ss_pred eCCCcEEEEECCCCCEEE----EEeCCCccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEE-ecCCCceEEEEE
Confidence 999999999999886543 34443333322332 33332222 244566788887765543 333333 89
Q ss_pred ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
|+|++++++ +|+.|+.|++||+++++.+.++. +|. ..+.+++ |+|+ ++ +|++|+.||.|++
T Consensus 172 ~spdg~~la--sg~~dg~i~iwd~~~~~~~~~~~--------~h~----~~v~~l~-~spd---~~-~l~s~s~dg~i~i 232 (321)
T 3ow8_A 172 YSPDGKYLA--SGAIDGIINIFDIATGKLLHTLE--------GHA----MPIRSLT-FSPD---SQ-LLVTASDDGYIKI 232 (321)
T ss_dssp ECTTSSEEE--EEETTSCEEEEETTTTEEEEEEC--------CCS----SCCCEEE-ECTT---SC-EEEEECTTSCEEE
T ss_pred ECCCCCEEE--EEcCCCeEEEEECCCCcEEEEEc--------ccC----CceeEEE-EcCC---CC-EEEEEcCCCeEEE
Confidence 999998654 56679999999999999999988 674 3577787 9995 55 9999999999999
Q ss_pred EEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 236 WDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
||+++ ++....+.+|...|.+++|+|++.+|.
T Consensus 233 wd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~ 264 (321)
T 3ow8_A 233 YDVQH-ANLAGTLSGHASWVLNVAFCPDDTHFV 264 (321)
T ss_dssp EETTT-CCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EECCC-cceeEEEcCCCCceEEEEECCCCCEEE
Confidence 99998 788899999999999999999998763
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-35 Score=232.14 Aligned_cols=229 Identities=12% Similarity=0.143 Sum_probs=169.9
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE----EeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS----SWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
.....+|...|++++|+|++. +++++.||+|+|||+.+++.... ..+|. ..|.+++|+| ++++|++++.|+
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~--~~V~~v~~sp--dg~~l~sgs~dg 161 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHD--DIVKTLSVFS--DGTQAVSGGKDF 161 (357)
T ss_dssp CSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCS--SCEEEEEECS--SSSEEEEEETTS
T ss_pred ecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCC--CCEEEEEECC--CCCEEEEEeCCC
Confidence 344567999999999999985 45677899999999988765432 23455 6799999999 999999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeec-cCCCCC----eEecCC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTD-SLCDSK----DDVPAE 159 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~s~~ 159 (270)
+|++||+++++... .+..+......+.+.... ........+.+.+||++.++..... ...+.. ++|+|+
T Consensus 162 ~v~iwd~~~~~~~~----~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 237 (357)
T 4g56_B 162 SVKVWDLSQKAVLK----SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE 237 (357)
T ss_dssp CEEEEETTTTEEEE----EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred eEEEEECCCCcEEE----EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhc
Confidence 99999999886543 555555555555544333 2334445567888999887765443 233333 899999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
+..+++ +|+.|+.|++||+++++++..+. +|. ..+.+++ |+|+ +++ +|++|+.||+|+|||++
T Consensus 238 ~~~~la-~g~~d~~i~~wd~~~~~~~~~~~--------~~~----~~v~~l~-~sp~--~~~-~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 238 KDDTFA-CGDETGNVSLVNIKNPDSAQTSA--------VHS----QNITGLA-YSYH--SSP-FLASISEDCTVAVLDAD 300 (357)
T ss_dssp STTEEE-EEESSSCEEEEESSCGGGCEEEC--------CCS----SCEEEEE-ECSS--SSC-CEEEEETTSCEEEECTT
T ss_pred ccceEE-EeecccceeEEECCCCcEeEEEe--------ccc----eeEEEEE-EcCC--CCC-EEEEEeCCCEEEEEECC
Confidence 877766 56779999999999999999888 663 4678888 9995 233 89999999999999999
Q ss_pred CCCcceeeeeccCCCeeEEEeec-CCCce
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWR-NPITM 267 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~-~g~~l 267 (270)
+ ++++..+ +|.+.|++++|+| |+.+|
T Consensus 301 ~-~~~~~~~-~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 301 F-SEVFRDL-SHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp S-CEEEEEC-CCSSCEEEEEECSSSTTEE
T ss_pred C-CcEeEEC-CCCCCEEEEEEeCCCCCEE
Confidence 8 7766555 7999999999998 77765
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.5e-34 Score=220.58 Aligned_cols=235 Identities=15% Similarity=0.295 Sum_probs=187.1
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+....+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|. ..|.+++|+| ++++|++++.|+.|
T Consensus 56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~s~~~d~~i 131 (312)
T 4ery_A 56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP--QSNLIVSGSFDESV 131 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS--SSSEEEEEETTSCE
T ss_pred ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcC--CCCEEEEEeCCCcE
Confidence 5667888999999999999999999999999999999999999999999988 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
++||+++++... .+..+......+.+...... ......+...+|++..++.+......+.. ++|+|+++++
T Consensus 132 ~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (312)
T 4ery_A 132 RIWDVKTGKCLK----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 207 (312)
T ss_dssp EEEETTTCCEEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEE
T ss_pred EEEECCCCEEEE----EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEE
Confidence 999999886533 44444444444444433322 23334566788999888776655544443 8999999866
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
+ +++.|+.|++||+++++.+..+. +|..... +.... +.+. ++. +|++|+.||.|++||+++ ++
T Consensus 208 ~--~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~--~~~~~-~~~~--~~~-~l~sg~~dg~i~vwd~~~-~~ 270 (312)
T 4ery_A 208 L--AATLDNTLKLWDYSKGKCLKTYT--------GHKNEKY--CIFAN-FSVT--GGK-WIVSGSEDNLVYIWNLQT-KE 270 (312)
T ss_dssp E--EEETTTEEEEEETTTTEEEEEEC--------SSCCSSS--CCCEE-EECS--SSC-EEEECCTTSCEEEEETTT-CC
T ss_pred E--EEcCCCeEEEEECCCCcEEEEEE--------ecCCceE--EEEEE-EEeC--CCc-EEEEECCCCEEEEEECCC-ch
Confidence 5 45568999999999999998888 5644222 22222 4432 455 999999999999999998 88
Q ss_pred ceeeeeccCCCeeEEEeecCCCcee
Q 024245 244 PLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 244 ~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+..+.+|...|.+++|+|++.+|.
T Consensus 271 ~~~~~~~h~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 271 IVQKLQGHTDVVISTACHPTENIIA 295 (312)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEE
T ss_pred hhhhhhccCCcEEEEeecCcCCceE
Confidence 8999999999999999999998764
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.4e-34 Score=224.07 Aligned_cols=231 Identities=14% Similarity=0.174 Sum_probs=180.6
Q ss_pred CCcccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCC-----CceeEEEeecCCCcceEEEEEeeCCCCCEEEE
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (270)
..+..+|++|.+.|++++|+|++ ++|++|+.|++|++|++.. +.++..+.+|. ..|.+++|+| ++++|++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~--dg~~l~s 82 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS--HIVQDCTLTA--DGAYALS 82 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS--SCEEEEEECT--TSSEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc--ccEEEEEECC--CCCEEEE
Confidence 35678899999999999999954 7999999999999999864 34567788888 6699999999 9999999
Q ss_pred EeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEe
Q 024245 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDV 156 (270)
Q Consensus 82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (270)
++.|++|++||+++++... .+..+......+.+...... ......+...+|++.... ...+.+|.. ++|
T Consensus 83 ~s~D~~v~~wd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~--~~~~~~h~~~v~~~~~ 156 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQ----RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--LATLLGHNDWVSQVRV 156 (319)
T ss_dssp EETTSEEEEEETTTTEEEE----EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE--EEEECCCSSCEEEEEE
T ss_pred EeCCCEEEEEECCCCCeeE----EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEeccCCcEEEEEE
Confidence 9999999999999986543 56666665555555443322 233345567789886432 234556665 788
Q ss_pred cCCCC-----eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245 157 PAEGP-----KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (270)
Q Consensus 157 s~~~~-----~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg 231 (270)
+|.+. .+++ +++.|+.|++||+++.+....+. +|. ..+.+++ |+|+ |+ +|++|+.||
T Consensus 157 ~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~--------~h~----~~v~~~~-~sp~---g~-~l~s~~~dg 218 (319)
T 3frx_A 157 VPNEKADDDSVTII-SAGNDKMVKAWNLNQFQIEADFI--------GHN----SNINTLT-ASPD---GT-LIASAGKDG 218 (319)
T ss_dssp CCC------CCEEE-EEETTSCEEEEETTTTEEEEEEC--------CCC----SCEEEEE-ECTT---SS-EEEEEETTC
T ss_pred ccCCCCCCCccEEE-EEeCCCEEEEEECCcchhheeec--------CCC----CcEEEEE-EcCC---CC-EEEEEeCCC
Confidence 87543 2343 66779999999999998888887 673 4678887 9995 55 999999999
Q ss_pred cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 232 SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.|++||+++ ++++..+.. ...|.+++|+|++.+|.
T Consensus 219 ~i~iwd~~~-~~~~~~~~~-~~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 219 EIMLWNLAA-KKAMYTLSA-QDEVFSLAFSPNRYWLA 253 (319)
T ss_dssp EEEEEETTT-TEEEEEEEC-CSCEEEEEECSSSSEEE
T ss_pred eEEEEECCC-CcEEEEecC-CCcEEEEEEcCCCCEEE
Confidence 999999998 888888875 46899999999998764
No 15
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-34 Score=223.28 Aligned_cols=238 Identities=13% Similarity=0.116 Sum_probs=169.2
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
..+.+|++.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|. ..|.+++|++..++++|++++.|++|+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~--~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE--GPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS--SCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC--ccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 3567999999999999999999999999999999998774 466788888 669999998622378999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCC---ccceecCCCCceEEEeccCce--eeeccCCCCC----eEecCCC
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP---YANAKQANEPKDCYEREVGET--VDTDSLCDSK----DDVPAEG 160 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~s~~~ 160 (270)
+||++++.... ...+..+......+.+.... ........+...+|++..... ....+.+|.. ++|+|+.
T Consensus 85 iWd~~~~~~~~--~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 85 IWREENGTWEK--SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp EECCSSSCCCE--EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred EEECCCCcceE--EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 99998864322 33444454444444443331 222333455677888876532 2345566665 8899873
Q ss_pred C----------------eEEEEecCCCceEEEEeCCCc---ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC-CC
Q 024245 161 P----------------KYMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-QG 220 (270)
Q Consensus 161 ~----------------~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~-~g 220 (270)
. .+++ +|+.|++|++||++.. +++..+. +|. ..+.+++ |+|+.. ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l~--------~h~----~~V~~v~-~sp~~~~~~ 228 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKLE--------AHS----DWVRDVA-WAPSIGLPT 228 (316)
T ss_dssp CC------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECCB--------CCS----SCEEEEE-CCCCSSCSC
T ss_pred CCccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeecc--------cCC----CceEEEE-ecCCCCCCC
Confidence 1 2343 7888999999999755 3555666 673 4688888 999631 12
Q ss_pred ceEEEEecCCCcEEEEEcCCC---CcceeeeeccCCCeeEEEeecCCCcee
Q 024245 221 FVNVLAGYEDGSILVWDIRNP---GIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 221 ~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
. +|++|+.||+|++||+++. ......+..|...|++++|+|+|.+|.
T Consensus 229 ~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~la 278 (316)
T 3bg1_A 229 S-TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILA 278 (316)
T ss_dssp C-EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEE
T ss_pred c-eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEE
Confidence 4 8999999999999999862 123345677899999999999998874
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-33 Score=218.32 Aligned_cols=232 Identities=15% Similarity=0.163 Sum_probs=184.0
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
+.+..+..|...|.+++|+|++++|++|+.|+.|++||+.++ .....+.+|. ..|.++.|++ + +.+++++.
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~-~~l~s~s~ 162 (340)
T 1got_B 88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT--GYLSCCRFLD--D-NQIVTSSG 162 (340)
T ss_dssp CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS--SCEEEEEEEE--T-TEEEEEET
T ss_pred CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC--ccEEEEEECC--C-CcEEEEEC
Confidence 566778899999999999999999999999999999999865 3556677887 6699999999 7 56999999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
|++|++||+++++... .+..+......+.+...... ......+...+|++..+.... .+.+|.. ++|+|+
T Consensus 163 d~~i~~wd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~ 237 (340)
T 1got_B 163 DTTCALWDIETGQQTT----TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ-TFTGHESDINAICFFPN 237 (340)
T ss_dssp TSCEEEEETTTTEEEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE-EECCCSSCEEEEEECTT
T ss_pred CCcEEEEECCCCcEEE----EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEE-EEcCCcCCEEEEEEcCC
Confidence 9999999999886543 55555555555554443322 233345677889998876554 4556665 899999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
+..++ +|+.|++|++||+++++.+..+.. + . ....+.+++ |+|+ |+ +|++|+.||.|++||+.
T Consensus 238 ~~~l~--s~s~d~~v~iwd~~~~~~~~~~~~--------~-~-~~~~v~~~~-~s~~---g~-~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 238 GNAFA--TGSDDATCRLFDLRADQELMTYSH--------D-N-IICGITSVS-FSKS---GR-LLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp SSEEE--EEETTSCEEEEETTTTEEEEEECC--------T-T-CCSCEEEEE-ECTT---SS-EEEEEETTSEEEEEETT
T ss_pred CCEEE--EEcCCCcEEEEECCCCcEEEEEcc--------C-C-cccceEEEE-ECCC---CC-EEEEECCCCeEEEEEcc
Confidence 98554 567799999999999888777652 1 1 233577887 9995 55 99999999999999999
Q ss_pred CCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+ ++.+..+.+|...|++++|+|+|.+|.
T Consensus 301 ~-~~~~~~~~~h~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 301 K-ADRAGVLAGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp T-CCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred c-CcEeeEeecCCCcEEEEEEcCCCCEEE
Confidence 8 888999999999999999999998763
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.1e-33 Score=219.06 Aligned_cols=233 Identities=15% Similarity=0.217 Sum_probs=181.6
Q ss_pred CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCc-----eeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
++..+|+||++.|++++|+|+ +++|+||+.|++|+|||+.+.+ +...+.+|. ..|.+++|+| ++++|+++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~--~~V~~~~~s~--dg~~l~s~ 104 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS--HFVSDVVISS--DGQFALSG 104 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS--SCEEEEEECT--TSSEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC--CCEEEEEECC--CCCEEEEE
Confidence 355689999999999999996 6899999999999999987643 456777887 6699999999 99999999
Q ss_pred eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc-cceecCCCCceEEEeccCceeeeccCCCCC----eEec
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP 157 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s 157 (270)
+.|+.|++|+........ ................... .......+...+|+............+|.. ++|+
T Consensus 105 ~~d~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 180 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTR----RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFS 180 (340)
T ss_dssp ETTSEEEEEETTTTEEEE----EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred cccccceEEeecccceee----eecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEc
Confidence 999999999998775432 2222222222222222222 222334556677888777777667777766 7888
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
+++...++++++.|+.|++||+++++.+..+. +|. ..+.+++ |+|+ ++ +|++|+.||.|++||
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--------~h~----~~v~~~~-~s~~---~~-~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--------GHT----GYLNTVT-VSPD---GS-LCASGGKDGQAMLWD 243 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTCEEEEEE
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEec--------CCC----CcEEEEE-ECCC---CC-EEEEEeCCCeEEEEE
Confidence 88766555577789999999999999998888 673 4678888 9995 44 999999999999999
Q ss_pred cCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 238 IRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 238 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+++ .+++..+.. ...|.+++|+|++.+++
T Consensus 244 ~~~-~~~~~~~~~-~~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 244 LNE-GKHLYTLDG-GDIINALCFSPNRYWLC 272 (340)
T ss_dssp TTT-TEEEEEEEC-SSCEEEEEECSSSSEEE
T ss_pred ecc-CceeeeecC-CceEEeeecCCCCceee
Confidence 998 788888875 46899999999988775
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=222.58 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=154.1
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC-CEEEEEeCCCcEEEE
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCW 91 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d~~i~~w 91 (270)
.+.+|.+.|++++|+|+|++|++|+.|++|++||+++++++..+.+|. ..|.+++|+| ++ .+|++++.|++|++|
T Consensus 122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~--~~V~~~~~~~--~~~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA--AQVTCVAASP--HKDSVFLSCSEDNRILLW 197 (344)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECS--SCTTEEEEEETTSCEEEE
T ss_pred cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC--CceEEEEecC--CCCCceeeeccccccccc
Confidence 456899999999999999999999999999999999999999999998 6699999999 65 478999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~ 165 (270)
|+++++... .+....+......+.+.... ........+.+.+||+.+++.+. .+.+|.. ++|+|++..+++
T Consensus 198 d~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~-~~~~h~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 198 DTRCPKPAS--QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL-SSAVHSQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp ETTSSSCEE--ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE-EEECCSSCEEEEEECSSSSCCEE
T ss_pred cccccceee--eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE-EEcCCCCCEEEEEEccCCCeEEE
Confidence 999886543 11112222222333332221 12223345667889998877654 4566766 899999976665
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+|+.|++|+|||+++++++ .+. +|. ..+.+++ |+|+ ++.+|++|+.||+|++|++.+
T Consensus 275 -sgs~D~~i~vwd~~~~~~~-~~~--------~H~----~~V~~v~-~sp~---~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 275 -SLSEDCSLAVLDSSLSELF-RSQ--------AHR----DFVRDAT-WSPL---NHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp -EEETTSCEEEECTTCCEEE-EEC--------CCS----SCEEEEE-ECSS---STTEEEEEETTSCEEEEECCC
T ss_pred -EEeCCCeEEEEECCCCcEE-EEc--------CCC----CCEEEEE-EeCC---CCeEEEEEcCCCeEEEEECCC
Confidence 6778999999999988765 455 673 4688898 9995 333788999999999999987
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.5e-33 Score=215.13 Aligned_cols=228 Identities=15% Similarity=0.228 Sum_probs=176.2
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.+++.+++|...|++++|+|++++|++|+.|++|++||+.+++.+..+.+|. ..|.+++|+| ++.+|++++.|++|
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~s~D~~i 131 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDK--KASMIISGSRDKTI 131 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECT--TSCEEEEEETTSCE
T ss_pred ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCC--CcEEEEEEcC--CCCEEEEEeCCCeE
Confidence 3577899999999999999999999999999999999999999999999998 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCC-------ccceecCCCCceEEEeccCceeeeccCCCCC----eEec
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-------YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP 157 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s 157 (270)
++||++... +..+..+......+.+.... ........+...+|++...+... .+.+|.. ++|+
T Consensus 132 ~vwd~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~s 205 (319)
T 3frx_A 132 KVWTIKGQC-----LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTAS 205 (319)
T ss_dssp EEEETTSCE-----EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE-EECCCCSCEEEEEEC
T ss_pred EEEECCCCe-----EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-eecCCCCcEEEEEEc
Confidence 999997542 22344444444333333221 12333445667889988765443 4556666 8999
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
|++++++ +++.|+.|+|||+++++.+..+. .+ ..+.+++ |+|+ +. +|++++. +.+++|+
T Consensus 206 p~g~~l~--s~~~dg~i~iwd~~~~~~~~~~~--------~~-----~~v~~~~-~sp~---~~-~la~~~~-~~i~v~~ 264 (319)
T 3frx_A 206 PDGTLIA--SAGKDGEIMLWNLAAKKAMYTLS--------AQ-----DEVFSLA-FSPN---RY-WLAAATA-TGIKVFS 264 (319)
T ss_dssp TTSSEEE--EEETTCEEEEEETTTTEEEEEEE--------CC-----SCEEEEE-ECSS---SS-EEEEEET-TEEEEEE
T ss_pred CCCCEEE--EEeCCCeEEEEECCCCcEEEEec--------CC-----CcEEEEE-EcCC---CC-EEEEEcC-CCcEEEE
Confidence 9998554 56779999999999999988887 22 3578888 9995 54 7777765 4599999
Q ss_pred cCCCCcceeeee--------ccCCCeeEEEeecCCCcee
Q 024245 238 IRNPGIPLTAMK--------VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 238 ~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~ls 268 (270)
+.. ...+..+. .|...+.+++|+|||++|.
T Consensus 265 ~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 265 LDP-QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp ETT-EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred eCc-CeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence 987 55444443 3456789999999999874
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=218.34 Aligned_cols=235 Identities=12% Similarity=0.147 Sum_probs=176.4
Q ss_pred Ccccccccccc-cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE---EeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 9 DPVAVLRGHRA-SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS---SWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 9 ~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
++++++.+|.. .|++++|+|+|++||+|+.|+.|+|||+.++..... ..+|. ..|.+++|+| ++++|++++.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~sp--~g~~l~s~s~ 81 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSP--CGNYLASASF 81 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCS--SCEEEEEECT--TSSEEEEEET
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccC--CcEEEEEECC--CCCEEEEEEC
Confidence 57888999988 999999999999999999999999999988764322 24566 6799999999 9999999999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCce--eeeccCCCCC----eEec
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGET--VDTDSLCDSK----DDVP 157 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~s 157 (270)
|+++++||+.++.... +..+.++......+.+...... ......+...+|++..... ....+.+|.. ++|+
T Consensus 82 D~~v~iw~~~~~~~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 82 DATTCIWKKNQDDFEC--VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp TSCEEEEEECCC-EEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred CCcEEEEEccCCCeEE--EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 9999999998764321 3355556555555554433322 2233456678899876643 2345666766 8999
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
|+++.++ +++.|+.|++||.++++ +..++. +| ...+.+++ |+|+ |+ +|++|+.||+|++
T Consensus 160 p~~~~l~--s~s~d~~i~~w~~~~~~~~~~~~~~--------~h----~~~v~~l~-~sp~---g~-~l~s~s~D~~v~i 220 (345)
T 3fm0_A 160 PSQELLA--SASYDDTVKLYREEEDDWVCCATLE--------GH----ESTVWSLA-FDPS---GQ-RLASCSDDRTVRI 220 (345)
T ss_dssp SSSSCEE--EEETTSCEEEEEEETTEEEEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEE
T ss_pred CCCCEEE--EEeCCCcEEEEEecCCCEEEEEEec--------CC----CCceEEEE-ECCC---CC-EEEEEeCCCeEEE
Confidence 9998554 56779999999998775 345666 66 34688888 9995 55 9999999999999
Q ss_pred EEcCCCCc--------------ceeeeec-cCCCeeEEEeecCCCcee
Q 024245 236 WDIRNPGI--------------PLTAMKV-HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 236 wd~~~~~~--------------~~~~~~~-~~~~v~~~~~s~~g~~ls 268 (270)
||...++. ++..+.+ |...|++++|+|++..|.
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~ 268 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA 268 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE
Confidence 99754221 2334444 888999999999887653
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-32 Score=214.79 Aligned_cols=230 Identities=15% Similarity=0.152 Sum_probs=165.2
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.+...+.+|...|++++|+|++.++++|+.|++|++||+++++.+..+.+|. ..|.+++|+| ++++|++++.|++|
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--SEVYSVAFSP--DNRQILSAGAEREI 142 (343)
T ss_dssp EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCC--SCEEEEEECS--STTEEEEEETTSCE
T ss_pred cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--CcEEEEEECC--CCCEEEEEcCCCEE
Confidence 3567789999999999999999999999999999999999999999999998 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCC-----------ccceecCCCCceEEEeccCceeeeccCCCCC----
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-----------YANAKQANEPKDCYEREVGETVDTDSLCDSK---- 153 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (270)
++||+....... ......+......+...... ........+...+|+.. ......+.+|..
T Consensus 143 ~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 143 KLWNILGECKFS--SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNH 218 (343)
T ss_dssp EEEESSSCEEEE--CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEE
T ss_pred EEEeccCCceee--eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceE
Confidence 999997432211 11111222223323222211 12223334556678732 233345566666
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~ 232 (270)
++|+|+|++++ +|+.|+.|++||++. ......+.. ...+.+++ |+|+ ++ +++ ++.|+.
T Consensus 219 ~~~s~~g~~l~--sgs~dg~v~iwd~~~~~~~~~~~~~-------------~~~v~~v~-~sp~---~~-~la-~~~d~~ 277 (343)
T 2xzm_R 219 LSISPNGKYIA--TGGKDKKLLIWDILNLTYPQREFDA-------------GSTINQIA-FNPK---LQ-WVA-VGTDQG 277 (343)
T ss_dssp EEECTTSSEEE--EEETTCEEEEEESSCCSSCSEEEEC-------------SSCEEEEE-ECSS---SC-EEE-EEESSC
T ss_pred EEECCCCCEEE--EEcCCCeEEEEECCCCcccceeecC-------------CCcEEEEE-ECCC---CC-EEE-EECCCC
Confidence 89999998654 567799999999954 334444431 22478888 9995 44 555 556888
Q ss_pred EEEEEcCCCCccee--eee-----------ccCCCeeEEEeecCCCcee
Q 024245 233 ILVWDIRNPGIPLT--AMK-----------VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 233 i~vwd~~~~~~~~~--~~~-----------~~~~~v~~~~~s~~g~~ls 268 (270)
|++||+.+ ++... .+. +|...|++++|+|+|.+|.
T Consensus 278 v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 325 (343)
T 2xzm_R 278 VKIFNLMT-QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF 325 (343)
T ss_dssp EEEEESSS-CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred EEEEEeCC-CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence 99999987 44332 333 6788899999999998764
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.4e-32 Score=210.92 Aligned_cols=231 Identities=19% Similarity=0.251 Sum_probs=179.0
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.+..++.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|. ..|.+++|+| ++++|++++.|+.|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~d~~i 89 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSS--DSNLLVSASDDKTL 89 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC--CceEEEEEcC--CCCEEEEECCCCEE
Confidence 4577889999999999999999999999999999999999999999998888 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
++||+++++... .+..+......+.+...... ......+...+|++..++.+. .+..|.. ++|+|+++.+
T Consensus 90 ~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 90 KIWDVSSGKCLK----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-TLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp EEEETTTCCEEE----EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCcEEE----EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE-EecCCCCcEEEEEEcCCCCEE
Confidence 999999886533 55555554444444433222 223345667889998877654 3445544 8999999855
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
+ +++.|+.|++||+++++.+..+.. .+ ...+..++ |+|+ ++ +|++++.||.|++||+++ ++
T Consensus 165 ~--~~~~d~~i~~wd~~~~~~~~~~~~-------~~----~~~~~~~~-~~~~---~~-~l~~~~~d~~i~iwd~~~-~~ 225 (312)
T 4ery_A 165 V--SSSYDGLCRIWDTASGQCLKTLID-------DD----NPPVSFVK-FSPN---GK-YILAATLDNTLKLWDYSK-GK 225 (312)
T ss_dssp E--EEETTSCEEEEETTTCCEEEEECC-------SS----CCCEEEEE-ECTT---SS-EEEEEETTTEEEEEETTT-TE
T ss_pred E--EEeCCCcEEEEECCCCceeeEEec-------cC----CCceEEEE-ECCC---CC-EEEEEcCCCeEEEEECCC-Cc
Confidence 4 566799999999999988877752 22 33566677 9995 44 999999999999999998 88
Q ss_pred ceeeeeccCCCeeE--EEee-cCCCce
Q 024245 244 PLTAMKVHLEPGLE--CSMW-RNPITM 267 (270)
Q Consensus 244 ~~~~~~~~~~~v~~--~~~s-~~g~~l 267 (270)
++..+.+|...+.. ..|+ +++.+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 226 CLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred EEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 88888888765433 3444 455543
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-32 Score=213.59 Aligned_cols=232 Identities=15% Similarity=0.191 Sum_probs=174.3
Q ss_pred CcccccccccccEEEEEE-----eC-CCCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCC
Q 024245 9 DPVAVLRGHRASVTDVCF-----HQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIG 75 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~ 75 (270)
++..+|+||.+.|++++| ++ ++++|++|+.|++|++||+.+. .+...+.+|. ..|.+++|+| +
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~~~--~ 87 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN--HFVSDLALSQ--E 87 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS--SCEEEEEECS--S
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC--CceEEEEECC--C
Confidence 467889999999999999 77 8999999999999999998753 3566778888 6699999999 9
Q ss_pred CCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeee-ccCCCCC
Q 024245 76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDT-DSLCDSK 153 (270)
Q Consensus 76 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (270)
+.+|++++.|++|++||+++++... .+..+......+.+...... ......+...+|++........ ...+|..
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~----~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 163 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYK----RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD 163 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEE----EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSS
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEE----EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCc
Confidence 9999999999999999999886533 55566555554444433322 2233456678898874332221 2234544
Q ss_pred ----eEecCCCC---------eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245 154 ----DDVPAEGP---------KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220 (270)
Q Consensus 154 ----~~~s~~~~---------~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g 220 (270)
++|+|++. .+++ +++.|+.|++||. ..+....+. +|. ..+.+++ |+|+ |
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~-~~~~~~~~~--------~h~----~~v~~~~-~s~~---g 225 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFA-SVGWDGRLKVWNT-NFQIRYTFK--------AHE----SNVNHLS-ISPN---G 225 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEE-EEETTSEEEEEET-TTEEEEEEE--------CCS----SCEEEEE-ECTT---S
T ss_pred eeeeeeeccccccccccCCCCCEEE-EEcCCCEEEEEcC-CCceeEEEc--------Ccc----ccceEEE-ECCC---C
Confidence 88888872 2344 5667999999994 456666776 663 4678888 9995 5
Q ss_pred ceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 221 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+ +|++|+.||.|++||++....+...+. +...|++++|+|++.+|+
T Consensus 226 ~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la 271 (343)
T 2xzm_R 226 K-YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVA 271 (343)
T ss_dssp S-EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEE
T ss_pred C-EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEE
Confidence 5 999999999999999965455555554 456799999999998875
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-32 Score=216.78 Aligned_cols=215 Identities=21% Similarity=0.360 Sum_probs=164.9
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
..|++++|+|+|++|++|+.|+.|+|||+.+++.+..+.+|. ..|.+++|+| ++++|++++.|++|++||+++++.
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCC--CCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCee
Confidence 359999999999999999999999999999999999999998 6699999999 999999999999999999998865
Q ss_pred CCCCccceecccceEEEEeecc--CCccceecCCCCceEEEeccCceeeec------cCCCCC----eEecCCCCeEEEE
Q 024245 99 SSNPSLTIKTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDTD------SLCDSK----DDVPAEGPKYMAV 166 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----~~~s~~~~~~~~~ 166 (270)
.. .+... .....+.+.. ..........+.+.+|++.+++.+... ..+|.. ++|+|+++.++
T Consensus 200 ~~----~~~~~-~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~-- 272 (393)
T 1erj_A 200 SL----TLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-- 272 (393)
T ss_dssp EE----EEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE--
T ss_pred EE----EEEcC-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE--
Confidence 32 22221 2222233322 122233344567788998887655432 145655 89999998654
Q ss_pred ecCCCceEEEEeCCCcc------------eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245 167 AGEQLSEVEIWDLNTAE------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~ 234 (270)
+|+.|+.|++||+++.. +...+. +| ...+.+++ |+|+ ++ +|++|+.||.|+
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~~~~---~~-~l~sgs~D~~v~ 335 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI--------GH----KDFVLSVA-TTQN---DE-YILSGSKDRGVL 335 (393)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEE--------CC----SSCEEEEE-ECGG---GC-EEEEEETTSEEE
T ss_pred EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe--------cc----cCcEEEEE-ECCC---CC-EEEEEeCCCeEE
Confidence 57779999999998643 333444 55 34678887 9985 44 999999999999
Q ss_pred EEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245 235 VWDIRNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
+||+++ ++++..+.+|...|.+++|++
T Consensus 336 iwd~~~-~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 336 FWDKKS-GNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEETTT-CCEEEEEECCSSCEEEEEECS
T ss_pred EEECCC-CeEEEEECCCCCCEEEEEecC
Confidence 999999 888999999999999999987
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=213.37 Aligned_cols=238 Identities=16% Similarity=0.154 Sum_probs=170.0
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEE-ee-cCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSS-WV-HSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~-~~-~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
.++++++++|.+.|++++|+|+ +|++|+.|+.|++||+..+ +....+ .. |. ..|.+++|+| ++++|++++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~las~s 77 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK--KAIRSVAWRP--HTSLLAAGS 77 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCC--SCEEEEEECT--TSSEEEEEE
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCcc--CCEEEEEECC--CCCEEEEEe
Confidence 3678899999999999999988 9999999999999999875 345555 23 65 6799999999 999999999
Q ss_pred CCCcEEEEEccCCcc---CCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccC-c--eeeeccCCCCC---
Q 024245 84 RDGTVKCWDIENGGL---SSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVG-E--TVDTDSLCDSK--- 153 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~--- 153 (270)
.|++|++||++.... ...+...+.++......+.+...... ......+...+|++... . .....+.+|..
T Consensus 78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 999999999964321 01112334455554544444333222 22333566788998532 2 23445677766
Q ss_pred -eEecCCCCeEEEEecCCCceEEEEeCCCc--ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245 154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (270)
Q Consensus 154 -~~~s~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d 230 (270)
++|+|++..++ +++.|++|++||.+++ +++..+. +|. ..+.++. |+|+. ++. +|++|+.|
T Consensus 158 ~v~~~p~~~~l~--s~s~D~~i~iW~~~~~~~~~~~~~~--------~h~----~~v~~~~-~~~~~-~~~-~l~s~s~D 220 (330)
T 2hes_X 158 HVIWHPSEALLA--SSSYDDTVRIWKDYDDDWECVAVLN--------GHE----GTVWSSD-FDKTE-GVF-RLCSGSDD 220 (330)
T ss_dssp EEEECSSSSEEE--EEETTSCEEEEEEETTEEEEEEEEC--------CCS----SCEEEEE-ECCSS-SSC-EEEEEETT
T ss_pred EEEECCCCCEEE--EEcCCCeEEEEECCCCCeeEEEEcc--------CCC----CcEEEEE-ecCCC-Cee-EEEEEeCC
Confidence 89999997543 5777999999998766 5677777 673 4688888 99962 144 89999999
Q ss_pred CcEEEEEcCCCC-------cceeeeec-cCCCeeEEEeecCCCcee
Q 024245 231 GSILVWDIRNPG-------IPLTAMKV-HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 231 g~i~vwd~~~~~-------~~~~~~~~-~~~~v~~~~~s~~g~~ls 268 (270)
++|++||++... .+...+.+ |...|++++|++++.+++
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s 266 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIAS 266 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEE
T ss_pred CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEE
Confidence 999999997621 33445554 889999999998886655
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.2e-33 Score=217.01 Aligned_cols=208 Identities=16% Similarity=0.180 Sum_probs=156.6
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC-CEEEEEeCCCcEEEE
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCW 91 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d~~i~~w 91 (270)
...+|.+.|++++|+|++++|++|+.|+.|++||+++++.+..+.+|. ..|.+++|+| ++ .++++++.|++|++|
T Consensus 134 ~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~--~~~~~~~s~~~dg~v~~w 209 (357)
T 4g56_B 134 AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS--SEVNCVAACP--GKDTIFLSCGEDGRILLW 209 (357)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECT--TCSSCEEEEETTSCEEEC
T ss_pred ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEcc--CCCceeeeeccCCceEEE
Confidence 455899999999999999999999999999999999999999999988 6699999999 65 478999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~ 165 (270)
|+++++... ......+......+.+.... ........+.+.+|++.+++.+. .+.+|.. ++|+|++..+++
T Consensus 210 d~~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 210 DTRKPKPAT--RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ-TSAVHSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp CTTSSSCBC--BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE-EECCCSSCEEEEEECSSSSCCEE
T ss_pred ECCCCceee--eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE-EEeccceeEEEEEEcCCCCCEEE
Confidence 999886543 22222233333333333221 22223345667889998876554 4455555 899999977665
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
+|+.|++|+|||+++++++..+ +| ...+.+++ |+|. ++. +|++|+.||+|++||+.+.++..
T Consensus 287 -sgs~D~~i~iwd~~~~~~~~~~---------~H----~~~V~~va-fsP~--d~~-~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 287 -SISEDCTVAVLDADFSEVFRDL---------SH----RDFVTGVA-WSPL--DHS-KFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp -EEETTSCEEEECTTSCEEEEEC---------CC----SSCEEEEE-ECSS--STT-EEEEEETTSCEEEEECC------
T ss_pred -EEeCCCEEEEEECCCCcEeEEC---------CC----CCCEEEEE-EeCC--CCC-EEEEEcCCCeEEEEECCCCCccc
Confidence 6778999999999998877654 46 34688898 9995 455 99999999999999998744433
No 27
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.3e-32 Score=227.45 Aligned_cols=237 Identities=13% Similarity=0.126 Sum_probs=177.2
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
++...++.+|...|++++|+|+|++||+|+.|++|+|||+.+++ ....+.+|. .+|.+++|+| ++++|++++.+
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~--~~v~~v~fs~--dg~~l~~~~~~ 124 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS--GPVKDISWDS--ESKRIAAVGEG 124 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS--SCEEEEEECT--TSCEEEEEECC
T ss_pred cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccC--CceEEEEECC--CCCEEEEEECC
Confidence 46778899999999999999999999999999999999997543 445677787 6699999999 99999988865
Q ss_pred ----CcEEEEEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeeeccCCCCC----eE
Q 024245 86 ----GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDSLCDSK----DD 155 (270)
Q Consensus 86 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 155 (270)
+.|++||. ++.. ..+.++......+.+..... .......+...+|+....+.. ..+.+|.. ++
T Consensus 125 ~~~~~~v~~wd~--~~~~----~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~-~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 125 RERFGHVFLFDT--GTSN----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-STFGEHTKFVHSVR 197 (611)
T ss_dssp SSCSEEEEETTT--CCBC----BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-EEECCCSSCEEEEE
T ss_pred CCceeEEEEeeC--CCCc----ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe-eeeccccCceEEEE
Confidence 36777774 4332 24455555555444443322 334445667788987766544 45677877 89
Q ss_pred ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
|+|+|+.++ +++.|++|++||+.+++.+..+.... ....+| ...+.+++ |+|+ |+ +|++++.|++|++
T Consensus 198 fspdg~~la--s~s~D~~i~lwd~~~g~~~~~~~~~~-~~~~~h----~~~V~~v~-~spd---g~-~l~s~s~D~~v~l 265 (611)
T 1nr0_A 198 YNPDGSLFA--STGGDGTIVLYNGVDGTKTGVFEDDS-LKNVAH----SGSVFGLT-WSPD---GT-KIASASADKTIKI 265 (611)
T ss_dssp ECTTSSEEE--EEETTSCEEEEETTTCCEEEECBCTT-SSSCSS----SSCEEEEE-ECTT---SS-EEEEEETTSEEEE
T ss_pred ECCCCCEEE--EEECCCcEEEEECCCCcEeeeecccc-cccccc----CCCEEEEE-ECCC---CC-EEEEEeCCCeEEE
Confidence 999998543 56779999999999998887774100 000134 45788898 9995 55 9999999999999
Q ss_pred EEcCCCCcce-------------------------------------------eeeeccCCCeeEEEeecCCCcee
Q 024245 236 WDIRNPGIPL-------------------------------------------TAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 236 wd~~~~~~~~-------------------------------------------~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
||+++ ++++ ..+.+|...|++++|+|||++|.
T Consensus 266 Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~ 340 (611)
T 1nr0_A 266 WNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF 340 (611)
T ss_dssp EETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE
Confidence 99987 4432 34457999999999999998763
No 28
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=216.63 Aligned_cols=240 Identities=15% Similarity=0.128 Sum_probs=174.4
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCC--CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
+++..+++|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|. ..|.+++|++..++++|++++.||
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTS
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC--CcEEEEEeCCCCCCCEEEEeccCC
Confidence 4678899999999999999999999999999999999998 556777788887 669999999821289999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccC--C-ccceecCCCCceEEEeccCcee-eeccCCCCC----eEecC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--P-YANAKQANEPKDCYEREVGETV-DTDSLCDSK----DDVPA 158 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~s~ 158 (270)
.|++||+.+++... ...+..+......+.+... . ........+...+|++...... ...+.+|.. ++|+|
T Consensus 80 ~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 80 KVLIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp CEEEEEEETTEEEE--EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred EEEEEEcCCCceeE--eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence 99999999886322 3344444444554444443 2 2233444566778998876432 224445554 88999
Q ss_pred -------------CCCeEEEEecCCCceEEEEeCCCcce----eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245 159 -------------EGPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 221 (270)
Q Consensus 159 -------------~~~~~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~ 221 (270)
++..++ +++.|+.|++||++++.. ...+. +| ...+.+++ |+|+...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~sp~~~~~~ 222 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFV--TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS 222 (379)
T ss_dssp CC----------CTTCEEE--EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE
T ss_pred ccccccccccCCCCCCEEE--EEeCCCeEEEEEecCCCcceeeEEEEe--------cc----cCcEeEEE-ECCCCCCCC
Confidence 566444 466799999999987653 34444 45 44688888 999521145
Q ss_pred eEEEEecCCCcEEEEEcCCCCc----ceeeeeccCCCeeEEEeecCCCcee
Q 024245 222 VNVLAGYEDGSILVWDIRNPGI----PLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 222 ~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+|++++.||.|++||+++... .+.....|...|++++|+|+|.+|.
T Consensus 223 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 272 (379)
T 3jrp_A 223 -YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 272 (379)
T ss_dssp -EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred -eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence 999999999999999998422 2222234788999999999998764
No 29
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-31 Score=210.94 Aligned_cols=229 Identities=11% Similarity=0.081 Sum_probs=178.4
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
+..|.++|++++|+|++++|++|+.|+.|++||+.+++ .+..+..|. ..|.+++|+| ++++|++++.|+.|++|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAP--DSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS--SCEEEEEEET--TTTEEEEEETTSCEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC--CcccEEEEeC--CCCEEEEEcCCCeEEEE
Confidence 45699999999999999999999999999999999887 888888888 6699999999 99999999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCce---eeeccCCCCC----eEecCCCCeE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGET---VDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~s~~~~~~ 163 (270)
|+++++... ......+......+.+...... ......+...+|++..... ......+|.. ++|+|++..+
T Consensus 80 d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 80 TLKGRTWKP--TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp EEETTEEEE--EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred ECCCCeeee--eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 998876432 2222333334444444333222 2233356677899887763 3334455554 8999999755
Q ss_pred EEEecCCCceEEEEeCC------------------CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245 164 MAVAGEQLSEVEIWDLN------------------TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (270)
+ +++.|+.|++||++ .++.+..+. +| ...+.+++ |+|+ +. +|+
T Consensus 158 ~--~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~ 218 (372)
T 1k8k_C 158 A--AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--------SS----CGWVHGVC-FSAN---GS-RVA 218 (372)
T ss_dssp E--EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--------CC----SSCEEEEE-ECSS---SS-EEE
T ss_pred E--EEcCCCCEEEEEcccccccccccccccccccchhhheEecC--------CC----CCeEEEEE-ECCC---CC-EEE
Confidence 4 46679999999954 566677766 45 34678887 9995 44 999
Q ss_pred EecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 226 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+++.||.|++||+++ ++++..+..|..+|++++|+|++.+|.
T Consensus 219 ~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~ 260 (372)
T 1k8k_C 219 WVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESSLVA 260 (372)
T ss_dssp EEETTTEEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred EEeCCCEEEEEECCC-CceeEEEccCCCCeEEEEEecCCCEEE
Confidence 999999999999998 889999999999999999999998875
No 30
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.2e-32 Score=225.44 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=172.8
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
.+++.+.+++|+|+|++|++++ ++.|++|++.+++....+.+|. ..|.+++|+| +|++|++|+.|++|++||+.+
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~--~~v~~~~~sp--dg~~lasg~~d~~v~lWd~~~ 90 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS--HQTTVAKTSP--SGYYCASGDVHGNVRIWDTTQ 90 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEEEEESSS
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCC--CceEEEEECC--CCcEEEEEeCCCCEEEeECCC
Confidence 3467788999999999999988 5699999999889999999998 6699999999 999999999999999999976
Q ss_pred CccCCCCccceecccceEEEEeeccCCccceecCCCC---ceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEec
Q 024245 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG 168 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~ 168 (270)
++... ...+..+......+.+.............. ..++....+. ....+.+|.. ++|+|+++..++ ++
T Consensus 91 ~~~~~--~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~-~~~~l~gh~~~v~~v~f~p~~~~~l~-s~ 166 (611)
T 1nr0_A 91 TTHIL--KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRII-SG 166 (611)
T ss_dssp TTCCE--EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEE-EE
T ss_pred Cccee--eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC-CcceecCCCCCceEEEECCCCCeEEE-EE
Confidence 54321 234444544444444433322222222211 1233333333 2345677777 899999986555 67
Q ss_pred CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
+.|++|++||.+++++...+. +|. ..+.+++ |+|+ |+ +|++|+.|++|++||+.+ ++++..+
T Consensus 167 s~D~~v~lwd~~~~~~~~~l~--------~H~----~~V~~v~-fspd---g~-~las~s~D~~i~lwd~~~-g~~~~~~ 228 (611)
T 1nr0_A 167 SDDNTVAIFEGPPFKFKSTFG--------EHT----KFVHSVR-YNPD---GS-LFASTGGDGTIVLYNGVD-GTKTGVF 228 (611)
T ss_dssp ETTSCEEEEETTTBEEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-CCEEEEC
T ss_pred eCCCeEEEEECCCCeEeeeec--------ccc----CceEEEE-ECCC---CC-EEEEEECCCcEEEEECCC-CcEeeee
Confidence 789999999999998888888 773 4688888 9995 55 999999999999999998 7777777
Q ss_pred e-------ccCCCeeEEEeecCCCcee
Q 024245 249 K-------VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 249 ~-------~~~~~v~~~~~s~~g~~ls 268 (270)
. +|.+.|++++|+|||++|.
T Consensus 229 ~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 229 EDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp BCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred ccccccccccCCCEEEEEECCCCCEEE
Confidence 4 7999999999999998763
No 31
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=210.67 Aligned_cols=240 Identities=16% Similarity=0.210 Sum_probs=174.4
Q ss_pred CCCCcccccccccccEEEEEEeCC---CCEEEEecCCCcEEEEeCCC-Ccee-EEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245 6 PPPDPVAVLRGHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQ-HRTV-SSSWVHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 6 ~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
.|.+.+..+++|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|. ..|.+++|+| ++++|+
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~ 102 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT--GPVLDVCWSD--DGSKVF 102 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS--SCEEEEEECT--TSSEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc--CCEEEEEECc--CCCEEE
Confidence 455788899999999999999998 69999999999999999987 5444 6778888 6699999999 999999
Q ss_pred EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc---ceecCCCCceEEEeccCceeeeccC--------
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA---NAKQANEPKDCYEREVGETVDTDSL-------- 149 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------- 149 (270)
+++.||.|++||+++++... ...+......+.+...+.. ......+...+|++..++.+.....
T Consensus 103 s~~~dg~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQ-----IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD 177 (368)
T ss_dssp EEETTSEEEEEETTTTEEEE-----EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred EEcCCCcEEEEEcCCCCcee-----eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence 99999999999999886432 3334444444444223332 2223345566677765543221110
Q ss_pred ----------------------------------CCCC--eEecCCCCe--EEEEecCCCceEEEEeCCCc---ceeeee
Q 024245 150 ----------------------------------CDSK--DDVPAEGPK--YMAVAGEQLSEVEIWDLNTA---ERCTRL 188 (270)
Q Consensus 150 ----------------------------------~~~~--~~~s~~~~~--~~~~~~~~d~~i~iwd~~~~---~~~~~~ 188 (270)
.+.. +++.++... ..+++++.|+.|++||++.. ..+..+
T Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 178 VIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp EETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred ecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 0111 333333221 11335677999999999877 456666
Q ss_pred ccCcCCCCCCcccCC--------CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEe
Q 024245 189 HQNSCGGSPNFSSKG--------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSM 260 (270)
Q Consensus 189 ~~~~~~~~~~h~~~~--------~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 260 (270)
. +|.... ...+.+++ |+|+ ++ +|++|+.||.|++||+++ ++++..+.+|..+|++++|
T Consensus 258 ~--------~~~~~~~~~~~~~~~~~v~~~~-~sp~---~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~ 323 (368)
T 3mmy_A 258 K--------CHRSNGTNTSAPQDIYAVNGIA-FHPV---HG-TLATVGSDGRFSFWDKDA-RTKLKTSEQLDQPISACCF 323 (368)
T ss_dssp E--------CSEEC----CCCEEECCEEEEE-ECTT---TC-CEEEEETTSCEEEEETTT-TEEEEECCCCSSCEEEEEE
T ss_pred e--------eeecccccccccccccceEEEE-EecC---CC-EEEEEccCCeEEEEECCC-CcEEEEecCCCCCceEEEE
Confidence 6 453211 11578888 9995 44 899999999999999998 8899999999999999999
Q ss_pred ecCCCcee
Q 024245 261 WRNPITMS 268 (270)
Q Consensus 261 s~~g~~ls 268 (270)
+|+|.+|.
T Consensus 324 s~~g~~l~ 331 (368)
T 3mmy_A 324 NHNGNIFA 331 (368)
T ss_dssp CTTSSCEE
T ss_pred CCCCCeEE
Confidence 99998874
No 32
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-31 Score=208.60 Aligned_cols=228 Identities=15% Similarity=0.175 Sum_probs=176.2
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|. ..|.+++|+| ++++|++++.|+.|++
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT--GTIWSIDVDC--FTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTTEEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcC--CcEEEEEEcC--CCCEEEEEeCCCeEEE
Confidence 45688999999999999999999999999999999999999999999888 6699999999 9999999999999999
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCccceecC-C-----CCceEEEeccCceee----------eccCCCC--
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-N-----EPKDCYEREVGETVD----------TDSLCDS-- 152 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~----------~~~~~~~-- 152 (270)
||+.+++... .+. .......+.+........... . +...+|++....... ..+..+.
T Consensus 101 wd~~~~~~~~----~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 101 WDVSNGQCVA----TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EETTTCCEEE----EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EECCCCcEEE----Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 9999886543 333 333333333333332222222 2 566778877654211 1111221
Q ss_pred -C---eEecCCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245 153 -K---DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 153 -~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
. ++|+|+++.++ +++.||.|++||+++ ++.+..+. +| ...+.+++ |+|+ +. +|+++
T Consensus 176 ~~~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~ 236 (369)
T 3zwl_B 176 DAATVAGWSTKGKYII--AGHKDGKISKYDVSNNYEYVDSID--------LH----EKSISDMQ-FSPD---LT-YFITS 236 (369)
T ss_dssp CCEEEEEECGGGCEEE--EEETTSEEEEEETTTTTEEEEEEE--------CC----SSCEEEEE-ECTT---SS-EEEEE
T ss_pred cceeEEEEcCCCCEEE--EEcCCCEEEEEECCCCcEeEEEEe--------cC----CCceeEEE-ECCC---CC-EEEEe
Confidence 2 88999998655 456689999999998 67777777 55 34678887 9995 44 99999
Q ss_pred cCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 228 YEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 228 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+.||.|++||+++ ++.+..+. +...+..++|+|++.++.
T Consensus 237 ~~d~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~ 275 (369)
T 3zwl_B 237 SRDTNSFLVDVST-LQVLKKYE-TDCPLNTAVITPLKEFII 275 (369)
T ss_dssp ETTSEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSSSEEE
T ss_pred cCCceEEEEECCC-Cceeeeec-CCCCceeEEecCCCceEE
Confidence 9999999999998 78888887 678999999999998763
No 33
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.9e-31 Score=212.27 Aligned_cols=227 Identities=15% Similarity=0.236 Sum_probs=175.0
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
+.+|...|++++|+|+|++||+|+.||.|+|||+++++.+..+.+|. ..+.++++++ ..|++++.|+.+++||.
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~--~~v~~~s~~~----~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNS----YILSSGSRSGHIHHHDV 216 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEET----TEEEEEETTSEEEEEET
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCC--CceEEEeeCC----CEEEEEeCCCceeEeee
Confidence 45688899999999999999999999999999999999999999998 5688888765 79999999999999999
Q ss_pred cCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCcee---eeccCCCCC----eEecCCCCeEEE
Q 024245 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETV---DTDSLCDSK----DDVPAEGPKYMA 165 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~s~~~~~~~~ 165 (270)
..... .+..+..+....+.......... ......+...+|+...++.. ......|.. ++|+|++..+++
T Consensus 217 ~~~~~---~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 217 RVAEH---HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp TSSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred cccce---eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence 87542 23345555555554444433332 22334556677888766532 223344444 889998877765
Q ss_pred E-ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE--ecCCCcEEEEEcCCCC
Q 024245 166 V-AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWDIRNPG 242 (270)
Q Consensus 166 ~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~--~~~dg~i~vwd~~~~~ 242 (270)
+ +|+.|++|++||++++++...+. .| ..+.++. |+|+ +. .+++ |+.||.|+|||+.+ +
T Consensus 294 ~~~gs~D~~I~iwd~~t~~~~~~~~--------~~-----~~v~~~~-~~~~---~~-~lv~~sg~~d~~I~iwd~~~-~ 354 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSGACLSAVD--------AH-----SQVCSIL-WSPH---YK-ELISGHGFAQNQLVIWKYPT-M 354 (420)
T ss_dssp EEECTTTCEEEEEETTTTEEEEEEE--------CS-----SCEEEEE-EETT---TT-EEEEEECTTTCCEEEEETTT-C
T ss_pred EEeecCCCEEEEEeCCccccceeec--------cc-----cceeeee-ecCC---CC-eEEEEEecCCCEEEEEECCC-C
Confidence 4 46789999999999999988887 33 3466676 8885 33 4444 45899999999999 8
Q ss_pred cceeeeeccCCCeeEEEeecCCCcee
Q 024245 243 IPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+++..+.+|.+.|++++|+|||.+|.
T Consensus 355 ~~v~~l~gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 355 AKVAELKGHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 99999999999999999999998764
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=208.33 Aligned_cols=236 Identities=13% Similarity=0.136 Sum_probs=161.5
Q ss_pred ccccc-cc-ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-------CceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245 10 PVAVL-RG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 10 ~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
.+..+ .+ |...|++++|+|++++|++|+.|+.|+|||+.. .+.+..+.+|. ..|.+++|+| ++++|+
T Consensus 48 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~sp--~g~~la 123 (330)
T 2hes_X 48 LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE--NEVKGVAWSN--DGYYLA 123 (330)
T ss_dssp EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC------CEEEEEECT--TSCEEE
T ss_pred EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC--CcEEEEEECC--CCCEEE
Confidence 34445 44 999999999999999999999999999999853 34667788888 6699999999 999999
Q ss_pred EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCc-eeeeccCCCCC----e
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGE-TVDTDSLCDSK----D 154 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~ 154 (270)
+++.|++|++||++.......++..+..+......+.+...... ......+.+.+|+..... .....+.+|.. +
T Consensus 124 s~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~ 203 (330)
T 2hes_X 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS 203 (330)
T ss_dssp EEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred EEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEE
Confidence 99999999999995432111122344455554444444333222 223335567789887653 34456777877 8
Q ss_pred EecCCCCeEEEEecCCCceEEEEeCCCc--------ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTA--------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (270)
Q Consensus 155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (270)
+|+|++....+++++.|++|++||++.+ .+...+.. .| ...+.+++ |+|. + +|++
T Consensus 204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-------~h----~~~v~~v~-~s~~---~--~l~s 266 (330)
T 2hes_X 204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-------VH----KRQVYNVA-WGFN---G--LIAS 266 (330)
T ss_dssp EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-------CC----SSCEEEEE-ECTT---S--CEEE
T ss_pred EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-------cc----ccceEEEE-EcCC---C--EEEE
Confidence 8999843222336778999999999765 23333331 24 44688888 9863 3 7999
Q ss_pred ecCCCcEEEEEcCCCCc--cee-eeeccCC-CeeEEEeec--CCCce
Q 024245 227 GYEDGSILVWDIRNPGI--PLT-AMKVHLE-PGLECSMWR--NPITM 267 (270)
Q Consensus 227 ~~~dg~i~vwd~~~~~~--~~~-~~~~~~~-~v~~~~~s~--~g~~l 267 (270)
++.||.|++||..+ ++ ... .+.+|.. .|++++|+| ++.+|
T Consensus 267 ~~~dg~v~iw~~~~-~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 267 VGADGVLAVYEEVD-GEWKVFAKRALCHGVYEINVVKWLELNGKTIL 312 (330)
T ss_dssp EETTSCEEEEEEET-TEEEEEEEESCTTTTSCEEEEEEC-----CCE
T ss_pred EeCCCEEEEEEcCC-CceEEEeccccccccceEEEEEEecCCCceEE
Confidence 99999999999987 42 232 3357876 899999999 67665
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-31 Score=207.24 Aligned_cols=229 Identities=14% Similarity=0.125 Sum_probs=167.3
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
..+|...|++++|+|++++|++|+.|+.|++||+..+ +++..+.+|. ..|.+++|+| ++++|++++.|++|++|
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~l~s~s~D~~v~iw 132 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE--NEVKSVAWAP--SGNLLATCSRDKSVWVW 132 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSCEEEE
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC--CCceEEEEeC--CCCEEEEEECCCeEEEE
Confidence 3689999999999999999999999999999998876 4567788888 6699999999 99999999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCce-eeeccCCCCC----eEecCCCCeEEE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGET-VDTDSLCDSK----DDVPAEGPKYMA 165 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~s~~~~~~~~ 165 (270)
|++++.... .+..+..+......+.+...... ......+.+.+|+....+. ....+.+|.. ++|+|++++++
T Consensus 133 d~~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~- 210 (345)
T 3fm0_A 133 EVDEEDEYE-CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA- 210 (345)
T ss_dssp EECTTSCEE-EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE-
T ss_pred ECCCCCCeE-EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE-
Confidence 998764211 12233344444444443333222 2233455677888887653 3456777777 89999998654
Q ss_pred EecCCCceEEEEeCCCcc---------------eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245 166 VAGEQLSEVEIWDLNTAE---------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d 230 (270)
+++.|++|+|||..... ++..+.. .| ...+.+++ |+|+ +. .|++++.|
T Consensus 211 -s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h----~~~v~~v~-~~~~---~~-~l~s~~~d 273 (345)
T 3fm0_A 211 -SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-------FH----SRTIYDIA-WCQL---TG-ALATACGD 273 (345)
T ss_dssp -EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS-------SC----SSCEEEEE-ECTT---TC-CEEEEETT
T ss_pred -EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC-------CC----CCcEEEEE-EecC---CC-EEEEEeCC
Confidence 56779999999964321 2223331 13 44688888 9995 44 89999999
Q ss_pred CcEEEEEcCCCCc---c-----eeeeeccCCCeeEEEeecCCC
Q 024245 231 GSILVWDIRNPGI---P-----LTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 231 g~i~vwd~~~~~~---~-----~~~~~~~~~~v~~~~~s~~g~ 265 (270)
+.|++|+...... + .....+|...|++++|+|++.
T Consensus 274 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP 316 (345)
T ss_dssp SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence 9999999876321 1 122357999999999999874
No 36
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.7e-32 Score=217.66 Aligned_cols=235 Identities=14% Similarity=0.137 Sum_probs=161.9
Q ss_pred cccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEE--eecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
......+|...|+||+|+| ++.+||+|+.||.|+|||+.+++....+ .+|. +.|.+|+|+|. ++++|++++.||
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~--~~V~~l~f~p~-~~~~l~s~s~D~ 187 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPL-NTNQFYASSMEG 187 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSS--CCCCEEEECSS-CTTEEEEECSSS
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCC--CCEEEEEEeCC-CCCEEEEEeCCC
Confidence 4455667899999999999 6679999999999999999877654444 4566 77999999984 568999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP 161 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~ 161 (270)
+|++||++++.... .............+.+....... .....+.+.+|++.... ...+.+|.. ++|+|+++
T Consensus 188 ~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~--~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 188 TTRLQDFKGNILRV--FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE--LWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp CEEEEETTSCEEEE--EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB--CCCSBCCSSCEEEEEECTTCS
T ss_pred EEEEeeccCCceeE--EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce--eEEEecccceEEeeeecCCCc
Confidence 99999998764321 11111222222333333222222 22234556778876432 335667766 89999998
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
.+++ +++.|+.|+|||+++.+....+... .+| ...+.+++ |+|+ |. +|++|+.||.|++||+++
T Consensus 264 ~~~~-s~s~d~~v~iwd~~~~~~~~~~~~~-----~~h----~~~v~~~~-~spd---g~-~l~s~~~D~~i~iwd~~~- 327 (435)
T 4e54_B 264 WFLA-TASVDQTVKIWDLRQVRGKASFLYS-----LPH----RHPVNAAC-FSPD---GA-RLLTTDQKSEIRVYSASQ- 327 (435)
T ss_dssp SEEE-EEETTSBCCEEETTTCCSSSCCSBC-----CBC----SSCEEECC-BCTT---SS-EEEEEESSSCEEEEESSS-
T ss_pred eEEE-EecCcceeeEEecccccccceEEEe-----eec----ccccccee-ECCC---CC-eeEEEcCCCEEEEEECCC-
Confidence 7776 5667999999999987755544310 134 44688888 9995 55 999999999999999998
Q ss_pred CcceeeeeccCC------CeeEEEeecCCCce
Q 024245 242 GIPLTAMKVHLE------PGLECSMWRNPITM 267 (270)
Q Consensus 242 ~~~~~~~~~~~~------~v~~~~~s~~g~~l 267 (270)
+.....+..|.. .+....|+|++.++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
T 4e54_B 328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 359 (435)
T ss_dssp SSSEEEECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred CccceEEecccccccccceeEEEEEcCCCCEE
Confidence 666666555432 23344555555443
No 37
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-33 Score=219.96 Aligned_cols=229 Identities=12% Similarity=0.071 Sum_probs=165.3
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
++.|.+.|++++|+|++++|++|+.|+.|++||+.++ +.+..+.+|. ..|.+++|+| ++++|++++.|++|++|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~s~--~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHD--KIVTCVDWAP--KSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCS--SCEEEEEECT--TTCCEEEEETTSSEEEC
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCC--ceEEEEEEeC--CCCEEEEEeCCCeEEEE
Confidence 4557789999999999999999999999999999988 7778888888 6699999999 99999999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCce--eeeccCC-CCC----eEecCCCCeE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGET--VDTDSLC-DSK----DDVPAEGPKY 163 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~----~~~s~~~~~~ 163 (270)
|+.+++.. .+...+..+......+.+...... ......+...+|++...+. ....+.+ |.. ++|+|+++.+
T Consensus 83 d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 83 EKRPDGTW-KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp ------CC-CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred EcCCCCce-eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 99987611 123344445555554444433222 2333355677888887763 2333444 655 8999999755
Q ss_pred EEEecCCCceEEEEeCCCcc------------------eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245 164 MAVAGEQLSEVEIWDLNTAE------------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (270)
+ +++.|+.|++||++..+ ++..+ +| ...+.+++ |+|+ ++ +|+
T Consensus 162 ~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~v~~~~-~sp~---~~-~l~ 221 (377)
T 3dwl_C 162 A--AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---------PS----GGWVHAVG-FSPS---GN-ALA 221 (377)
T ss_dssp E--EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---------CC----SSSEEEEE-ECTT---SS-CEE
T ss_pred E--EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---------cC----CceEEEEE-ECCC---CC-EEE
Confidence 4 56679999999986332 22222 23 45688888 9995 54 999
Q ss_pred EecCCCcEEEEEcCCCCcc----eeeeeccCCCeeEEEeecCCCcee
Q 024245 226 AGYEDGSILVWDIRNPGIP----LTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 226 ~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+++.||.|++||+++ ++. +..+.+|...|++++|+|+|++|.
T Consensus 222 ~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 267 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSA-PEQPPRALITVKLSQLPLRSLLWANESAIVA 267 (377)
T ss_dssp EEETTTEEC-CEECS-TTSCEEECCCEECSSSCEEEEEEEETTEEEE
T ss_pred EEeCCCcEEEEECCC-CCCcceeeEeecCCCCceEEEEEcCCCCEEE
Confidence 999999999999998 665 788999999999999999998875
No 38
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.4e-31 Score=226.16 Aligned_cols=232 Identities=15% Similarity=0.204 Sum_probs=179.2
Q ss_pred cccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCC-----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245 10 PVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (270)
....+++|.+.|++++|+|+ +.+|++|+.|++|++||+.+. .....+.+|. ..|.+++|+| ++++|++++
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~--~g~~l~sgs 449 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS--HFVEDVVLSS--DGQFALSGS 449 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS--SCEEEEEECT--TSSEEEEEE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC--CcEEEEEECC--CCCEEEEEe
Confidence 34568899999999999986 479999999999999999753 3456788888 6699999999 999999999
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceee--eccCCCCC----eEe
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVD--TDSLCDSK----DDV 156 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~ 156 (270)
.|++|++||+.++.... .+..+...+..+.+...... ......+.+.+|+........ ....+|.. ++|
T Consensus 450 ~Dg~v~vwd~~~~~~~~----~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTR----RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF 525 (694)
T ss_dssp TTSEEEEEETTTTEEEE----EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred CCCcEEEEECCCCccee----EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence 99999999999886543 55566555554444433322 233345567778875543322 22345655 889
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
+|++...++++++.|++|++||++++++...+. +| ...+.+++ |+|+ ++ +|++|+.||.|++|
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~--------~h----~~~v~~v~-~spd---g~-~l~sg~~Dg~i~iw 588 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA--------GH----TGYVSTVA-VSPD---GS-LCASGGKDGVVLLW 588 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSBCEEE
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc--------CC----CCCEEEEE-EeCC---CC-EEEEEeCCCeEEEE
Confidence 998743233367789999999999999888888 67 34688888 9995 55 99999999999999
Q ss_pred EcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 237 DIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 237 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
|+++ ++++..+.. ...|.+++|+|++.+|+
T Consensus 589 d~~~-~~~~~~~~~-~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 589 DLAE-GKKLYSLEA-NSVIHALCFSPNRYWLC 618 (694)
T ss_dssp ETTT-TEEEECCBC-SSCEEEEEECSSSSEEE
T ss_pred ECCC-CceEEEecC-CCcEEEEEEcCCCcEEE
Confidence 9998 777777764 56899999999998875
No 39
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-31 Score=211.22 Aligned_cols=233 Identities=20% Similarity=0.249 Sum_probs=169.8
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC----------------CcceEEEEEeeCCCCCEE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----------------AHGIVSVATGPSIGLNKV 79 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l 79 (270)
+|.+.|++++|+|+|++||+|+ ++.+++|++.+++.+..+..+.. ...|.+++|+| ++++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TSSEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC--CCCEE
Confidence 6999999999999999999987 68899999999988877765431 12489999999 99999
Q ss_pred EEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC---eE
Q 024245 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK---DD 155 (270)
Q Consensus 80 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 155 (270)
++++.|+.|++||+.+++... .+..+......+.+...... ......+...+|++.+++...... .+.. ++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~ 213 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM----ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA 213 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE----EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence 999999999999999886533 45555555554444433322 223345567789998877554332 2222 88
Q ss_pred ecC-CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245 156 VPA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (270)
Q Consensus 156 ~s~-~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~ 234 (270)
|+| ++.. ++ +|+.|+.|++||+++++.+..+.... ....+| ...+.+++ |+|+ |+ +|++|+.||.|+
T Consensus 214 ~~~~~~~~-l~-~~s~d~~v~iwd~~~~~~~~~~~~~~-~~~~~h----~~~v~~v~-~~~~---g~-~l~s~s~d~~v~ 281 (393)
T 1erj_A 214 VSPGDGKY-IA-AGSLDRAVRVWDSETGFLVERLDSEN-ESGTGH----KDSVYSVV-FTRD---GQ-SVVSGSLDRSVK 281 (393)
T ss_dssp ECSTTCCE-EE-EEETTSCEEEEETTTCCEEEEEC-------CCC----SSCEEEEE-ECTT---SS-EEEEEETTSEEE
T ss_pred EECCCCCE-EE-EEcCCCcEEEEECCCCcEEEeecccc-cCCCCC----CCCEEEEE-ECCC---CC-EEEEEeCCCEEE
Confidence 999 6654 44 56779999999999998887764210 000134 45788888 9995 55 999999999999
Q ss_pred EEEcCCC-----------CcceeeeeccCCCeeEEEeecCCCcee
Q 024245 235 VWDIRNP-----------GIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 235 vwd~~~~-----------~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+||+++. +.+...+.+|...|.+++|+|++.+|.
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 326 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEE
Confidence 9999762 234567789999999999999998763
No 40
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.3e-31 Score=204.60 Aligned_cols=242 Identities=13% Similarity=0.095 Sum_probs=175.4
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
.....+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|. ..|.+++|+|..++++|++++.
T Consensus 2 ~~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 2 HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD--SSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CCCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS--SCEEEEEECCGGGCSEEEEEET
T ss_pred CccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC--CcEEEEEEcCCCCCCEEEEEcC
Confidence 345667899999999999999999999999999999999876 4666777787 6699999998323789999999
Q ss_pred CCcEEEEEccCCccCC-----CCccceecccceEEEEeeccC--Cc-cceecCCCCceEEEeccCceeeec---------
Q 024245 85 DGTVKCWDIENGGLSS-----NPSLTIKTNSYHFCKLSLVKE--PY-ANAKQANEPKDCYEREVGETVDTD--------- 147 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~--------- 147 (270)
||.|++||++++.... .+...+..+......+.+... .. .......+...+|++...+.+...
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 9999999998874321 112334444444544444443 22 233344566788998776533211
Q ss_pred ---cCCCCC----eEecCC---CCeEEEEecCCCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245 148 ---SLCDSK----DDVPAE---GPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (270)
Q Consensus 148 ---~~~~~~----~~~s~~---~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p 215 (270)
...+.. ++|+|+ +..+ + +++.|+.+.+|+...++. +..+. +| ...+.+++ |+|
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l-~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~h----~~~i~~~~-~~p 224 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKL-A-VSALEQAIIYQRGKDGKLHVAAKLP--------GH----KSLIRSIS-WAP 224 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEE-E-EEETTEEEEEEECTTSCEEEEEECC--------CC----CSCEEEEE-ECC
T ss_pred ccccCCcccceeEEEeccCCCCCcEE-E-EecCCCcEEEEccCCCceeeeeecC--------CC----CcceeEEE-ECC
Confidence 112333 889997 6544 4 455689998888877764 45555 55 44688888 999
Q ss_pred CCCC-CceEEEEecCCCcEEEEEcCCC---------------------------------------------Ccceeeee
Q 024245 216 SKSQ-GFVNVLAGYEDGSILVWDIRNP---------------------------------------------GIPLTAMK 249 (270)
Q Consensus 216 ~~~~-g~~~l~~~~~dg~i~vwd~~~~---------------------------------------------~~~~~~~~ 249 (270)
++.. +. +|++|+.||.|++||++.. .+++..+.
T Consensus 225 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 225 SIGRWYQ-LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp CSSCSSE-EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred CCCCcce-EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 6311 04 9999999999999999872 15677788
Q ss_pred ccCCCeeEEEeecCCCcee
Q 024245 250 VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 250 ~~~~~v~~~~~s~~g~~ls 268 (270)
+|...|++++|+|++.+|.
T Consensus 304 ~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 304 DHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp TTSSCEEEEEECSSSCCEE
T ss_pred cccccEEEEEEcCCCCEEE
Confidence 8999999999999998764
No 41
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-30 Score=201.40 Aligned_cols=249 Identities=14% Similarity=0.132 Sum_probs=169.7
Q ss_pred CCCCCccccccc--ccc--cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245 5 PPPPDPVAVLRG--HRA--SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 5 ~~~~~~~~~~~~--h~~--~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
.-|-.|.+.|.+ ..+ .+++|+||+++ +||+| .|++|+|||+.++++++.+..+.+...|.+++|+| ++++|+
T Consensus 8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l~ 83 (318)
T 4ggc_A 8 YIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLA 83 (318)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEE
T ss_pred ccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEEE
Confidence 344456666653 222 35789999986 77766 48999999999999999887666557799999999 999999
Q ss_pred EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEe
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV 156 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (270)
+|+.||+|++||+++++... .+..+......++.... ........+....++..........+.+|.. +.+
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~----~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EEETTSEEEEEETTTTEEEE----EEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEECCCcEEEeecCCceeEE----EecCccceEEEeecCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 99999999999999987644 55566555554444332 1222233344455666666666666667766 788
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc--------------CCCC-----CCc-----------------c
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--------------CGGS-----PNF-----------------S 200 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~~-----~~h-----------------~ 200 (270)
+++++.++ +++.|+.|++||+++++......... .... .+. .
T Consensus 159 ~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 159 APDGRHLA--SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp CTTSSEEE--EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred cCCCCEEE--EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence 99998654 56679999999998765321111000 0000 000 0
Q ss_pred cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 201 ~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
......+..+. |+|.. ...++++|+.|+.|++||+++ ++++..+.+|.+.|++++|+|||.+|.
T Consensus 237 ~~~~~~v~~~~-~~~~~--~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~V~~l~~spdg~~l~ 300 (318)
T 4ggc_A 237 VDAHSQVCSIL-WSPHY--KELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVA 300 (318)
T ss_dssp EECSSCEEEEE-EETTT--TEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred ccceeeeeeee-ecccc--cceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 00112234444 77742 222333456899999999999 899999999999999999999998764
No 42
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.4e-31 Score=209.20 Aligned_cols=234 Identities=18% Similarity=0.246 Sum_probs=174.8
Q ss_pred CcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCCC-CEE
Q 024245 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGL-NKV 79 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l 79 (270)
+.+..+.+|.+.|++++|+| ++.+|++|+.||.|+|||+.++ +++..+.+|. ..|.+++|+| ++ ++|
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p--~~~~~l 147 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT--KRVGIVAWHP--TAQNVL 147 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS--SCEEEEEECS--SBTTEE
T ss_pred CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC--CeEEEEEECc--CCCCEE
Confidence 45667889999999999999 9999999999999999999987 6678888888 6699999999 86 699
Q ss_pred EEEeCCCcEEEEEccCCccCCCCccce--ecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC---
Q 024245 80 ISQGRDGTVKCWDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK--- 153 (270)
Q Consensus 80 ~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 153 (270)
++++.|+.|++||+++++... .+ ..+......+.+...... ......+...+|++..++.+.....+|..
T Consensus 148 ~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 223 (402)
T 2aq5_A 148 LSAGCDNVILVWDVGTGAAVL----TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP 223 (402)
T ss_dssp EEEETTSCEEEEETTTTEEEE----EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSC
T ss_pred EEEcCCCEEEEEECCCCCccE----EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcc
Confidence 999999999999999886543 44 344444444444433322 22334566788999888776654344543
Q ss_pred --eEecCCCCeEEEEec---CCCceEEEEeCCCcce-eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245 154 --DDVPAEGPKYMAVAG---EQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 154 --~~~s~~~~~~~~~~~---~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
++|+|++..+ + +| +.|+.|++||+++++. +..... .| ...+.++. |+|+ ++.++++|
T Consensus 224 ~~~~~~~~~~~l-~-~g~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~----~~~v~~~~-~s~~---~~~l~~~g 286 (402)
T 2aq5_A 224 VHAVFVSEGKIL-T-TGFSRMSERQVALWDTKHLEEPLSLQEL-------DT----SSGVLLPF-FDPD---TNIVYLCG 286 (402)
T ss_dssp CEEEECSTTEEE-E-EEECTTCCEEEEEEETTBCSSCSEEEEC-------CC----CSSCEEEE-EETT---TTEEEEEE
T ss_pred eEEEEcCCCcEE-E-EeccCCCCceEEEEcCccccCCceEEec-------cC----CCceeEEE-EcCC---CCEEEEEE
Confidence 8999998643 3 45 5799999999998764 333331 12 33567777 9995 55344577
Q ss_pred cCCCcEEEEEcCCCCcc-eeeeecc--CCCeeEEEeecCCCcee
Q 024245 228 YEDGSILVWDIRNPGIP-LTAMKVH--LEPGLECSMWRNPITMS 268 (270)
Q Consensus 228 ~~dg~i~vwd~~~~~~~-~~~~~~~--~~~v~~~~~s~~g~~ls 268 (270)
+.||.|++||+.+ +++ +..+..| ...|.+++|+|++.++.
T Consensus 287 ~~dg~i~i~d~~~-~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 287 KGDSSIRYFEITS-EAPFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp TTCSCEEEEEECS-STTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred cCCCeEEEEEecC-CCcceEeecccccCCcccceEEecccccce
Confidence 7899999999998 553 5666554 48999999999998763
No 43
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-32 Score=221.47 Aligned_cols=233 Identities=9% Similarity=0.006 Sum_probs=167.9
Q ss_pred ccccEEEEEEeCCC---------CEEEE-------------------ecCCCcEEEEeCCCCcee----EEEeecCCCcc
Q 024245 17 HRASVTDVCFHQTK---------PILFA-------------------GTTGGELRIWDTVQHRTV----SSSWVHSAAHG 64 (270)
Q Consensus 17 h~~~v~~~~~s~~~---------~~l~s-------------------~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~ 64 (270)
+.+.|.+|+|+|++ ++||+ ++.|++|+|||+.+++.. ..+..|. +.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~--~~ 209 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF--GE 209 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC--CS
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC--Cc
Confidence 57788999999875 45555 567899999999877642 3455666 56
Q ss_pred eEEEEEeeC----CCCCEEEEEeCCCcEEEEEccCCccC-------CCCccceecccceEEEEeeccCCccceecCCCCc
Q 024245 65 IVSVATGPS----IGLNKVISQGRDGTVKCWDIENGGLS-------SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133 (270)
Q Consensus 65 v~~~~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (270)
|.+++|+|. .++.+|++++.||+|++||+.++... ..+...+..+......+.+............+.+
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV 289 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFV 289 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEE
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEE
Confidence 999999992 12579999999999999999876432 1233445555555555554433333334445677
Q ss_pred eEEEeccCceeeeccCCCCC----e--EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCcee
Q 024245 134 DCYEREVGETVDTDSLCDSK----D--DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC 207 (270)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~----~--~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 207 (270)
.+||+.++......+.+|.. + +|+|++..+++ +++.|++|+|||++++++...+. +|.. ...+
T Consensus 290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la-S~S~D~tvklWD~~~~~~~~~~~--------~~~~--~~~v 358 (524)
T 2j04_B 290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS-TVAVDGYFYIFNPKDIATTKTTV--------SRFR--GSNL 358 (524)
T ss_dssp EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE-EEETTSEEEEECGGGHHHHCEEE--------EECS--CCSC
T ss_pred EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE-EeccCCeEEEEECCCCCcccccc--------cccc--cCcc
Confidence 88999877655555677776 5 46787744555 67789999999999988877776 4532 1236
Q ss_pred eeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 208 ~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+++ |+|+ ++ .|++++.|++|++||+++ +.++..+.+|.+.|++|+|+|+|.+|.
T Consensus 359 ~~v~-fsp~---~~-~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 359 VPVV-YCPQ---IY-SYIYSDGASSLRAVPSRA-AFAVHPLVSRETTITAIGVSRLHPMVL 413 (524)
T ss_dssp CCEE-EETT---TT-EEEEECSSSEEEEEETTC-TTCCEEEEECSSCEEEEECCSSCCBCE
T ss_pred cceE-eCCC---cC-eEEEeCCCCcEEEEECcc-cccceeeecCCCceEEEEeCCCCCeEE
Confidence 7787 9995 55 899999999999999998 777788999999999999999998763
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-30 Score=208.82 Aligned_cols=231 Identities=16% Similarity=0.131 Sum_probs=175.2
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+++..+.+|.+.|++++|+|++++|++|+.|+.|++||+.+++.+..+.+|. ..|.+++|+| ++++|++++.|+.|
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR--ATVTDIAIID--RGRNVLSASLDGTI 205 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS--SCEEEEEEET--TTTEEEEEETTSCE
T ss_pred ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC--CcEEEEEEcC--CCCEEEEEcCCCcE
Confidence 5667778999999999999999999999999999999999999999999888 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceec---ccceEEEEe-------------------eccCCccc---eecCCCCceEEEeccCce
Q 024245 89 KCWDIENGGLSSNPSLTIKT---NSYHFCKLS-------------------LVKEPYAN---AKQANEPKDCYEREVGET 143 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~-------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~ 143 (270)
++||+++++... .+.. .......+. +.+++... .....+...+|++..++.
T Consensus 206 ~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 206 RLWECGTGTTIH----TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp EEEETTTTEEEE----EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred EEeECCCCceeE----EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence 999999886543 2221 111111111 11222222 223345677899998887
Q ss_pred eeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcce-eeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245 144 VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218 (270)
Q Consensus 144 ~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~ 218 (270)
+......|.. ++|+|++..+++ +|+.||.|++||+++++. +..+. +| ....+.++. |.
T Consensus 282 ~~~~~~~~~~~v~~~~~~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~--------~~---~~~~v~~~~-~~---- 344 (420)
T 3vl1_A 282 TIQLPSKFTCSCNSLTVDGNNANYIY-AGYENGMLAQWDLRSPECPVGEFL--------IN---EGTPINNVY-FA---- 344 (420)
T ss_dssp EEEECCTTSSCEEEEEECSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEE--------ES---TTSCEEEEE-EE----
T ss_pred eEEcccccCCCceeEEEeCCCCCEEE-EEeCCCeEEEEEcCCCcCchhhhh--------cc---CCCCceEEE-eC----
Confidence 7777666665 899999985554 566799999999998754 66666 33 133455554 54
Q ss_pred CCceEEEEecCCCcEEEEEcCCCCc--------ceeeeeccCCCeeEEEeecCCC
Q 024245 219 QGFVNVLAGYEDGSILVWDIRNPGI--------PLTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 219 ~g~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~s~~g~ 265 (270)
+++ +|++++.||.|++||+..+.+ ....+..|...|.+++|+|++.
T Consensus 345 ~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 345 AGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp TTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred CCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence 344 999999999999999987422 2334567888999999999998
No 45
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-30 Score=225.56 Aligned_cols=234 Identities=13% Similarity=0.146 Sum_probs=189.0
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+..+++.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|. .+|.+++|+| ++++|++++.||.|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE--TPVRAGKFIA--RKNWIIVGSDDFRI 79 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEG--GGTEEEEEETTSEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC--CcEEEEEEeC--CCCEEEEEeCCCeE
Confidence 4567899999999999999999999999999999999999999999999888 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecC-CCCe
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA-EGPK 162 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~-~~~~ 162 (270)
++||+.+++... .+..+......+.+...... ......+...+|++..+......+.+|.. ++|+| ++.
T Consensus 80 ~vw~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~- 154 (814)
T 3mkq_A 80 RVFNYNTGEKVV----DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS- 154 (814)
T ss_dssp EEEETTTCCEEE----EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-
T ss_pred EEEECCCCcEEE----EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-
Confidence 999999886543 55555555554554443322 23334566788999888666666777766 89999 554
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
.++ +++.||.|++||+++++....+.. + ....+..+. |+|.. ++. +|++++.||.|++||+++ +
T Consensus 155 ~l~-~~~~dg~v~vwd~~~~~~~~~~~~--------~---~~~~v~~~~-~~~~~-~~~-~l~~~~~dg~i~~~d~~~-~ 218 (814)
T 3mkq_A 155 TFA-SGCLDRTVKVWSLGQSTPNFTLTT--------G---QERGVNYVD-YYPLP-DKP-YMITASDDLTIKIWDYQT-K 218 (814)
T ss_dssp EEE-EEETTSEEEEEETTCSSCSEEEEC--------C---CTTCCCEEE-ECCST-TCC-EEEEECTTSEEEEEETTT-T
T ss_pred EEE-EEeCCCeEEEEECCCCcceeEEec--------C---CCCCEEEEE-EEECC-CCC-EEEEEeCCCEEEEEECCC-C
Confidence 444 466799999999998888877772 3 124566676 98831 344 999999999999999998 8
Q ss_pred cceeeeeccCCCeeEEEeecCCCce
Q 024245 243 IPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+++..+.+|...|.+++|+|+|.+|
T Consensus 219 ~~~~~~~~~~~~v~~~~~~~~~~~l 243 (814)
T 3mkq_A 219 SCVATLEGHMSNVSFAVFHPTLPII 243 (814)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 8899999999999999999999765
No 46
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-30 Score=216.26 Aligned_cols=226 Identities=18% Similarity=0.299 Sum_probs=175.3
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+.+..+.+|...|.+++|+|++++|++|+.|+.|++||. +++.+..+..|. ..|.+++|+| ++++|++++.|+.|
T Consensus 335 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~--~~v~~~~~s~--dg~~l~~~~~d~~v 409 (577)
T 2ymu_A 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFSP--DGQTIASASDDKTV 409 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS--SCEEEEEECT--TSSCEEEEETTSEE
T ss_pred CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC--CCeEEEEECC--CCCEEEEEeCCCEE
Confidence 455678899999999999999999999999999999995 577888888888 6699999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
++||.. ++. +..+..+......+.+....... .....+...+|+... + ....+.+|.. ++|+|+++.+
T Consensus 410 ~~~~~~-~~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 410 KLWNRN-GQL----LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp EEECTT-CCE----EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSCEE
T ss_pred EEEeCC-CCE----EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCCEE
Confidence 999964 332 23445555544444443322222 222344566777533 2 2334555655 8999999855
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
+ +++.|+.|++||. +++++..+. +|. ..+.+++ |+|+ |+ +|++++.||.|++||. + ++
T Consensus 483 a--s~~~d~~i~iw~~-~~~~~~~~~--------~h~----~~v~~l~-~s~d---g~-~l~s~~~dg~v~lwd~-~-~~ 540 (577)
T 2ymu_A 483 A--SASDDKTVKLWNR-NGQLLQTLT--------GHS----SSVRGVA-FSPD---GQ-TIASASDDKTVKLWNR-N-GQ 540 (577)
T ss_dssp E--EEETTSEEEEEET-TSCEEEEEE--------CCS----SCEEEEE-ECTT---SS-CEEEEETTSEEEEECT-T-SC
T ss_pred E--EEeCCCEEEEEcC-CCCEEEEEe--------CCC----CCEEEEE-EcCC---CC-EEEEEECcCEEEEEeC-C-CC
Confidence 4 5667999999995 588888888 674 4678888 9995 55 8999999999999996 3 78
Q ss_pred ceeeeeccCCCeeEEEeecCCCcee
Q 024245 244 PLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 244 ~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
++..+.+|.+.|++++|+|||++|.
T Consensus 541 ~~~~~~~h~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 541 LLQTLTGHSSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEE
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 8999999999999999999998763
No 47
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.98 E-value=1.2e-30 Score=207.65 Aligned_cols=236 Identities=16% Similarity=0.186 Sum_probs=179.0
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc------eeEEEeecCCCcceEEEEEeeCCC----C--
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIG----L-- 76 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~----~-- 76 (270)
.....+++|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+..|. ..|.+++|+| + +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~~g~~ 80 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQ--AIERDAFE 80 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEE--EEETTTEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC--CcEEEEEEec--ccccCCcc
Confidence 46678899999999999998 799999999999999999887 788888888 6699999999 8 8
Q ss_pred -CEEEEEeCCCcEEEEEccCCccCCCC-ccceecc-----cceEEEEeec----cCCc--cceecCCCCceEEEecc---
Q 024245 77 -NKVISQGRDGTVKCWDIENGGLSSNP-SLTIKTN-----SYHFCKLSLV----KEPY--ANAKQANEPKDCYEREV--- 140 (270)
Q Consensus 77 -~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~--- 140 (270)
++|++++.|+.|++||+.+++..... ...+..+ ......+.+. .... .......+...+|++..
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99999999999999999987641100 2233333 2344444444 2222 22333456778899987
Q ss_pred ---Cceee-----ecc------CCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCC---c
Q 024245 141 ---GETVD-----TDS------LCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN---F 199 (270)
Q Consensus 141 ---~~~~~-----~~~------~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---h 199 (270)
.+.+. ... ..|.. ++|+|++ . ++ +++.|+.|++||+++++.+..+. + |
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~-~~~~dg~i~i~d~~~~~~~~~~~--------~~~~h 229 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L-IA-TGFNNGTVQISELSTLRPLYNFE--------SQHSM 229 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E-EE-EECTTSEEEEEETTTTEEEEEEE--------CCC--
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e-EE-EEeCCCcEEEEECCCCceeEEEe--------ccccc
Confidence 44333 111 22333 8999999 4 43 56779999999999999888887 4 4
Q ss_pred ccCCCceeeeeeecCCCCCCCceEEEEecCC---CcEEEEEcCCCCcceeeeec-------------cCCCeeEEEeecC
Q 024245 200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRNPGIPLTAMKV-------------HLEPGLECSMWRN 263 (270)
Q Consensus 200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~-------------~~~~v~~~~~s~~ 263 (270)
.. ....+.+++ |+|+ +. +|++++.| |.|++||+++ ++++..+.+ |...|.+++|+|+
T Consensus 230 ~~-~~~~i~~i~-~~~~---~~-~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 230 IN-NSNSIRSVK-FSPQ---GS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp -C-CCCCEEEEE-ECSS---TT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred cc-cCCccceEE-ECCC---CC-EEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCC
Confidence 10 134677887 9995 44 99999999 9999999998 888999998 9999999999999
Q ss_pred CCcee
Q 024245 264 PITMS 268 (270)
Q Consensus 264 g~~ls 268 (270)
+.+|.
T Consensus 303 ~~~l~ 307 (397)
T 1sq9_A 303 GETLC 307 (397)
T ss_dssp SSEEE
T ss_pred CCEEE
Confidence 98764
No 48
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3e-31 Score=212.41 Aligned_cols=233 Identities=15% Similarity=0.170 Sum_probs=175.3
Q ss_pred CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCc------eeEE---EeecCCCcceEEEEEeeCCC-CC
Q 024245 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR------TVSS---SWVHSAAHGIVSVATGPSIG-LN 77 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~------~~~~---~~~~~~~~~v~~~~~~~~~~-~~ 77 (270)
+++..+.+|...|++++|+|+ +.+|++++.|+.|++||+.+++ .... +..|. ..|.+++|+| + +.
T Consensus 104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~ 179 (416)
T 2pm9_A 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV--DEVISLAWNQ--SLAH 179 (416)
T ss_dssp CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS--CCCCEEEECS--SCTT
T ss_pred cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC--CCeeEEEeCC--CCCc
Confidence 578889999999999999998 8999999999999999998876 3322 24565 6699999999 7 78
Q ss_pred EEEEEeCCCcEEEEEccCCccCCCCccceecc------cceEEEEeeccCC--ccceecCCC---CceEEEeccCceeee
Q 024245 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTN------SYHFCKLSLVKEP--YANAKQANE---PKDCYEREVGETVDT 146 (270)
Q Consensus 78 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~ 146 (270)
+|++++.|+.|++||+++++... .+... ......+.+.... ........+ ...+|++........
T Consensus 180 ~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~ 255 (416)
T 2pm9_A 180 VFASAGSSNFASIWDLKAKKEVI----HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ 255 (416)
T ss_dssp EEEEESSSSCEEEEETTTTEEEE----EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred EEEEEcCCCCEEEEECCCCCcce----EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE
Confidence 99999999999999999876543 33222 2333334443332 223333344 788899998765555
Q ss_pred ccC-CCCC----eEecC-CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245 147 DSL-CDSK----DDVPA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220 (270)
Q Consensus 147 ~~~-~~~~----~~~s~-~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g 220 (270)
.+. +|.. ++|+| ++..++ +++.|+.|++||+++++++..+. +|. ..+.+++ |+|++ .
T Consensus 256 ~~~~~~~~~v~~~~~s~~~~~~l~--s~~~dg~v~~wd~~~~~~~~~~~--------~~~----~~v~~~~-~s~~~--~ 318 (416)
T 2pm9_A 256 TLNQGHQKGILSLDWCHQDEHLLL--SSGRDNTVLLWNPESAEQLSQFP--------ARG----NWCFKTK-FAPEA--P 318 (416)
T ss_dssp CCCSCCSSCEEEEEECSSCSSCEE--EEESSSEEEEECSSSCCEEEEEE--------CSS----SCCCCEE-ECTTC--T
T ss_pred EeecCccCceeEEEeCCCCCCeEE--EEeCCCCEEEeeCCCCccceeec--------CCC----CceEEEE-ECCCC--C
Confidence 666 7766 89999 676444 56679999999999999999988 663 4577787 99953 1
Q ss_pred ceEEEEecCCCcEEEEEcCCCCcceeee-----------------------------------eccCCCeeEEEeecCCC
Q 024245 221 FVNVLAGYEDGSILVWDIRNPGIPLTAM-----------------------------------KVHLEPGLECSMWRNPI 265 (270)
Q Consensus 221 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----------------------------------~~~~~~v~~~~~s~~g~ 265 (270)
. +|++++.||.|++||+.+.. ..... ..|..++.+++|+|||+
T Consensus 319 ~-~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 396 (416)
T 2pm9_A 319 D-LFACASFDNKIEVQTLQNLT-NTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK 396 (416)
T ss_dssp T-EEEECCSSSEEEEEESCCCC-CSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE
T ss_pred C-EEEEEecCCcEEEEEccCCC-CCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe
Confidence 4 99999999999999998733 22211 11667888999999999
Q ss_pred cee
Q 024245 266 TMS 268 (270)
Q Consensus 266 ~ls 268 (270)
+|.
T Consensus 397 ~la 399 (416)
T 2pm9_A 397 LVQ 399 (416)
T ss_dssp EEC
T ss_pred EEE
Confidence 875
No 49
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=7.2e-30 Score=203.69 Aligned_cols=245 Identities=15% Similarity=0.166 Sum_probs=174.7
Q ss_pred CcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEe-------------ecCCCcceEEEEEeeCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSW-------------VHSAAHGIVSVATGPSI 74 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~ 74 (270)
+....+++|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. +|. ..|.+++|+|.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~- 110 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR--YSVETVQWYPH- 110 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS--SCEEEEEECTT-
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC--CcEEEEEEccC-
Confidence 45677889999999999999 99999999999999999999876655443 355 67999999983
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCC----ccceecCCCCceEEEeccCceeeeccCC
Q 024245 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP----YANAKQANEPKDCYEREVGETVDTDSLC 150 (270)
Q Consensus 75 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (270)
++++|++++.|+.|++||+.+++... .+. .......+...... ........+...+|++..++.+. .+.+
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~ 184 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTAD----VFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH-ILQG 184 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEE----EEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-EECC
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccce----ecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-eecC
Confidence 34689999999999999999886543 222 12222222222211 22334445677889998776554 3445
Q ss_pred CCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCC---CCCCcccCCCceeeeeeecCCCCCCCce
Q 024245 151 DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCG---GSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (270)
Q Consensus 151 ~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~---~~~~h~~~~~~~~~~~~~~~p~~~~g~~ 222 (270)
|.. ++|+|+++++++ +++.||.|++||++++. .+..+...... ............+.+++ |+|+ ++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~---~~- 258 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILA-TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC-FTSD---GL- 258 (408)
T ss_dssp CCSCEEEEEECSSCTTEEE-EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE-ECTT---SS-
T ss_pred CCCcEEEEEECCCCCcEEE-EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE-EcCC---CC-
Confidence 555 899999987665 56679999999998776 44444210000 00000012345688888 9995 44
Q ss_pred EEEEecCCCcEEEEEcCCCC----------------------------------------------cceeeeeccCCCee
Q 024245 223 NVLAGYEDGSILVWDIRNPG----------------------------------------------IPLTAMKVHLEPGL 256 (270)
Q Consensus 223 ~l~~~~~dg~i~vwd~~~~~----------------------------------------------~~~~~~~~~~~~v~ 256 (270)
+|++++.||.|++||+++.. +++..+.+|...|+
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 338 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD 338 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEE
Confidence 99999999999999987622 34566778999999
Q ss_pred EEEeecCCCcee
Q 024245 257 ECSMWRNPITMS 268 (270)
Q Consensus 257 ~~~~s~~g~~ls 268 (270)
+++|+|++.+|.
T Consensus 339 ~~~~s~~~~~l~ 350 (408)
T 4a11_B 339 CCVFQSNFQELY 350 (408)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEcCCCCEEE
Confidence 999999998763
No 50
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.9e-30 Score=196.52 Aligned_cols=230 Identities=14% Similarity=0.178 Sum_probs=176.6
Q ss_pred CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
+.++++++++|.+.|++++| |++.+|++|+.||.|++||+.+++....+..|. ..|.+++|+| ++++|++++.|+
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~dg 81 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ--GFLNSVCYDS--EKELLLFGGKDT 81 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECS--SCEEEEEEET--TTTEEEEEETTS
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC--ccEEEEEECC--CCCEEEEecCCC
Confidence 34788999999999999999 999999999999999999999999898898887 6699999999 999999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecC-CCC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA-EGP 161 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~-~~~ 161 (270)
.|++|++...... .+...+..+......+.+.. .........+...+|+ .......+..|.. ++|.| ++.
T Consensus 82 ~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 82 MINGVPLFATSGE-DPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp CEEEEETTCCTTS-CC-CEECCCSSCEEEEEEET-TEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTT
T ss_pred eEEEEEeeecCCC-CcccchhhcccCEEEEEecC-CEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCC
Confidence 9999999865422 23445555655565555532 2223334455566777 3333334445555 67777 666
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
.++ +++.|+.|++||. .+....+.. .| ...+.+++ |+|+ + .+++++.||.|++||+++
T Consensus 157 ~l~--~~~~d~~i~i~d~--~~~~~~~~~-------~~----~~~i~~~~-~~~~---~--~~~~~~~dg~i~i~d~~~- 214 (313)
T 3odt_A 157 KFL--TASADKTIKLWQN--DKVIKTFSG-------IH----NDVVRHLA-VVDD---G--HFISCSNDGLIKLVDMHT- 214 (313)
T ss_dssp EEE--EEETTSCEEEEET--TEEEEEECS-------SC----SSCEEEEE-EEET---T--EEEEEETTSEEEEEETTT-
T ss_pred EEE--EEECCCCEEEEec--CceEEEEec-------cC----cccEEEEE-EcCC---C--eEEEccCCCeEEEEECCc-
Confidence 544 4566899999993 455556652 13 44677887 9984 4 489999999999999999
Q ss_pred CcceeeeeccCCCeeEEEeecCCCcee
Q 024245 242 GIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
++++..+.+|...|++++|+|++.+++
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~~l~~ 241 (313)
T 3odt_A 215 GDVLRTYEGHESFVYCIKLLPNGDIVS 241 (313)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred hhhhhhhhcCCceEEEEEEecCCCEEE
Confidence 889999999999999999999997655
No 51
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=9.4e-31 Score=208.20 Aligned_cols=220 Identities=15% Similarity=0.094 Sum_probs=144.2
Q ss_pred cccccccccccEEEEEEeC--------CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC-CEEE
Q 024245 10 PVAVLRGHRASVTDVCFHQ--------TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVI 80 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~--------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~ 80 (270)
++..+.||++.|++++|+| ++++||+|+.|++|+|||+.++.++..+..|. .+|.+++|+| ++ ++|+
T Consensus 128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~--~~v~~v~~~p--~~~~~l~ 203 (393)
T 4gq1_A 128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLS--SPGISVQFRP--SNPNQLI 203 (393)
T ss_dssp EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECS--SCEEEEEEET--TEEEEEE
T ss_pred eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCC--CCcEEEEECC--CCCceEE
Confidence 4567899999999999998 78899999999999999999888888887787 6699999999 65 4799
Q ss_pred EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEe
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV 156 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (270)
+++.|++|++||+++++............ ....+......... .....+|.. +.|
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~--~~~~~s~~~~~~~~-------------------~~~~~~~~~~v~~v~~ 262 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVK--NPWLLTLNTLPLVN-------------------TCHSSGIASSLANVRW 262 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CS--CCCSEEEESGGGC-------------------------CCSSSCSEEEE
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcc--cceEEeccccccee-------------------eeecccccccceeeee
Confidence 99999999999999876533111110000 11111111111100 001122322 556
Q ss_pred c-CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC--------------CCceeeeeeecCCCCCCCc
Q 024245 157 P-AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK--------------GRGMCMAVQAYLPSKSQGF 221 (270)
Q Consensus 157 s-~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~--------------~~~~~~~~~~~~p~~~~g~ 221 (270)
+ +++..++ +++.|+++++||+..++....+. .|... ......... |.|. .+.
T Consensus 263 ~~~dg~~l~--s~s~d~~i~vwd~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~ 329 (393)
T 4gq1_A 263 IGSDGSGIL--AMCKSGAWLRWNLFANNDYNEIS--------DSTMKLGPKNLLPNVQGISLFPSLLGAC-PHPR--YMD 329 (393)
T ss_dssp ETTTTCEEE--EECTTSEEEEEEC---------------------------CCSCSEEEECSSCCSSCCE-ECSS--CTT
T ss_pred ecCCCCEEE--EEeCCCCEEEEECccCCCCceEe--------eecCccccEEEccccccccccCcceeEE-EccC--CCC
Confidence 5 7887654 56779999999999877665554 22111 011222333 5553 233
Q ss_pred eEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 222 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.++++|+.||.|++||+.+ +++...+.+|..+|++++|+|||++|.
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~svafspdG~~LA 375 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPIVDFCWHQDGSHLA 375 (393)
T ss_dssp EEEEEETTTTEEEEEETTC-TTCCEEEEECSSCEEEEEECTTSSEEE
T ss_pred EEEEEECCCCEEEEEECCC-CcEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 3888999999999999998 777788888999999999999999875
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.3e-31 Score=213.74 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=161.2
Q ss_pred CCccccc-ccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCC---Cc---eeEEEeecCCCcceEEEEEeeCCCCCEE
Q 024245 8 PDPVAVL-RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HR---TVSSSWVHSAAHGIVSVATGPSIGLNKV 79 (270)
Q Consensus 8 ~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~---~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l 79 (270)
.+++..+ ++|.+.|++++|+| ++++|++|+.||.|+|||+.+ +. ....+ .|. ..|.+++|+| ++++|
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~--~~v~~~~~~~--~~~~l 126 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCS--STVTQITMIP--NFDAF 126 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECS--SCEEEEEECT--TSSEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCC--CCEEEEEEeC--CCCEE
Confidence 3567778 89999999999999 999999999999999999976 43 23233 366 6699999999 99999
Q ss_pred EEEeCCCcEEEEEcc---CCccCCCCccceecc------------cceEEEEeeccCCcc---ceecCCCCceEEEeccC
Q 024245 80 ISQGRDGTVKCWDIE---NGGLSSNPSLTIKTN------------SYHFCKLSLVKEPYA---NAKQANEPKDCYEREVG 141 (270)
Q Consensus 80 ~s~~~d~~i~~wd~~---~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 141 (270)
++++.||.|++||++ +++... ....+ ......+.....+.. ......+...+|++...
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 202 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVK----FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL 202 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEE----EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCEEEEEEeccccCCceee----ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 999999999999995 443321 11111 111112221122222 22333456778999887
Q ss_pred ceeeeccCC-CCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC
Q 024245 142 ETVDTDSLC-DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS 216 (270)
Q Consensus 142 ~~~~~~~~~-~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~ 216 (270)
+.+...... |.. ++|+|++..++ +|+.||.|++||+++++++..+.. +| ...+.+++ |+|.
T Consensus 203 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~-------~~----~~~v~~~~-~~~~ 268 (437)
T 3gre_A 203 ERLQIIENSPRHGAVSSICIDEECCVLI--LGTTRGIIDIWDIRFNVLIRSWSF-------GD----HAPITHVE-VCQF 268 (437)
T ss_dssp CEEEEEECCGGGCCEEEEEECTTSCEEE--EEETTSCEEEEETTTTEEEEEEBC-------TT----CEEEEEEE-ECTT
T ss_pred eeeEEEccCCCCCceEEEEECCCCCEEE--EEcCCCeEEEEEcCCccEEEEEec-------CC----CCceEEEE-eccc
Confidence 766543331 433 89999987554 566799999999999999888763 23 33567774 5543
Q ss_pred C-CCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecC
Q 024245 217 K-SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 217 ~-~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 263 (270)
- +++. +|++|+.||.|++||+++ ++++..+.+|...+..+.|+|+
T Consensus 269 ~s~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 269 YGKNSV-IVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp TCTTEE-EEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCB
T ss_pred cCCCcc-EEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceeccc
Confidence 1 2455 999999999999999998 7777777765444443333333
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=2e-30 Score=220.43 Aligned_cols=231 Identities=18% Similarity=0.241 Sum_probs=173.9
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
+.+.+.+|...|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|. ..|.+++|+| ++++|++++.|++|+
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~--~~v~~~~~s~--~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT--KDVLSVAFSL--DNRQIVSASRDRTIK 497 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECT--TSSCEEEEETTSCEE
T ss_pred ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCC--CCEEEEEEeC--CCCEEEEEeCCCEEE
Confidence 456789999999999999999999999999999999999999999999998 6699999999 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCC---ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCe
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP---YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK 162 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~ 162 (270)
+||+....... .......+......+.+.... ........+.+.+|++...+... .+.+|.. ++|+|+++.
T Consensus 498 iwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~-~~~~h~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 498 LWNTLGECKYT-ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-TLAGHTGYVSTVAVSPDGSL 575 (694)
T ss_dssp EECTTSCEEEE-ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSE
T ss_pred EEECCCCccee-eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE-EEcCCCCCEEEEEEeCCCCE
Confidence 99986543211 001112233334444443332 22334456678889998776543 5667766 899999985
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
++ +|+.|+.|++||+++++.+..+. . ...+.+++ |+|+ +. +|+++ .|+.|++||+++ +
T Consensus 576 l~--sg~~Dg~i~iwd~~~~~~~~~~~--------~-----~~~v~~~~-~sp~---~~-~l~~~-~~~~i~iwd~~~-~ 633 (694)
T 3dm0_A 576 CA--SGGKDGVVLLWDLAEGKKLYSLE--------A-----NSVIHALC-FSPN---RY-WLCAA-TEHGIKIWDLES-K 633 (694)
T ss_dssp EE--EEETTSBCEEEETTTTEEEECCB--------C-----SSCEEEEE-ECSS---SS-EEEEE-ETTEEEEEETTT-T
T ss_pred EE--EEeCCCeEEEEECCCCceEEEec--------C-----CCcEEEEE-EcCC---Cc-EEEEE-cCCCEEEEECCC-C
Confidence 44 57779999999999999887776 2 23577787 9995 43 55555 466799999998 7
Q ss_pred cceeeeeccC-------------------CCeeEEEeecCCCcee
Q 024245 243 IPLTAMKVHL-------------------EPGLECSMWRNPITMS 268 (270)
Q Consensus 243 ~~~~~~~~~~-------------------~~v~~~~~s~~g~~ls 268 (270)
+.+..+..+. ..+++++|+|||.+|.
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 634 SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp EEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 7666654321 1378999999998874
No 54
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.98 E-value=5.1e-30 Score=213.60 Aligned_cols=227 Identities=17% Similarity=0.260 Sum_probs=165.7
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
..+.|+||++.|++++|+|||++||+|+.|+.|+|||. ++++++.+.+|. ..|.+++|+| ++++|++++.|++|+
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~--~~V~~l~fsp--dg~~las~~~d~~i~ 82 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVWGVAFSP--DGQTIASASDDKTVK 82 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEECT--TSSEEEEEETTSCEE
T ss_pred EeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCC--CCEEEEEECC--CCCEEEEEeCCCEEE
Confidence 34569999999999999999999999999999999995 688999999998 6699999999 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCc--------------------------
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGE-------------------------- 142 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------------------- 142 (270)
+||+.. +. +..+..+......+.+........ .........|+.....
T Consensus 83 vWd~~~-~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 157 (577)
T 2ymu_A 83 LWNRNG-QL----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 157 (577)
T ss_dssp EEETTS-CE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred EEECCC-CE----EEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceec
Confidence 999643 32 234444444444333332221111 1112222223221110
Q ss_pred -------------eeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCc
Q 024245 143 -------------TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG 205 (270)
Q Consensus 143 -------------~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~ 205 (270)
........+.. +.++|+++.++ +++.|+.|++||. +++.+..+. +|. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~d~~v~~w~~-~~~~~~~~~--------~~~----~ 222 (577)
T 2ymu_A 158 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA--SASDDKTVKLWNR-NGQLLQTLT--------GHS----S 222 (577)
T ss_dssp ETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEE--EEETTSEEEEECT-TSCEEEEEE--------CCS----S
T ss_pred ccccceeccccceeeeeeccCCCcceeeeeecCCCCEEE--EEcCCCEEEEEeC-CCcEEEEEe--------cCC----C
Confidence 00011122222 78899998654 5667999999996 477777777 563 4
Q ss_pred eeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 206 ~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.+.+++ |+|+ ++ +|++++.|+.|++||.. ++.+..+.+|...|++++|+|++..|.
T Consensus 223 ~v~~~~-~s~d---g~-~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~v~~v~~~~d~~~l~ 278 (577)
T 2ymu_A 223 SVRGVA-FSPD---GQ-TIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRPDGQTIA 278 (577)
T ss_dssp CEEEEE-ECTT---SS-CEEEEETTSCEEEECTT--SCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CEEEEE-ECCC---CC-EEEEEeCCCEEEEEeCC--CCEEEEEecCCCCEEEEEEcCCCCEEE
Confidence 577887 9995 54 89999999999999965 678889999999999999999998763
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2e-30 Score=207.67 Aligned_cols=235 Identities=14% Similarity=0.196 Sum_probs=175.8
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC----CceeEEEeecCCCcceEEEEEeeCCC-CCEEEEEeC
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGR 84 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~ 84 (270)
++..+ .|...|++++|+|++.+|++|+.||.|++||+.+ .+.+..+..|. ..|.+++|+| + +++|++++.
T Consensus 60 ~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~~l~s~~~ 134 (416)
T 2pm9_A 60 PIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS--SSVKTVKFNA--KQDNVLASGGN 134 (416)
T ss_dssp CSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS--SCCCEEEECS--SSTTBEEEECS
T ss_pred EEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCc--cceEEEEEcC--CCCCEEEEEcC
Confidence 33334 5889999999999999999999999999999987 35777888887 6699999999 7 789999999
Q ss_pred CCcEEEEEccCCc------cCCCCccceecccceEEEEeeccC--CccceecCCCCceEEEeccCceeeeccCC-----C
Q 024245 85 DGTVKCWDIENGG------LSSNPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLC-----D 151 (270)
Q Consensus 85 d~~i~~wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 151 (270)
|+.|++||+.+++ .... ......+......+.+... .........+...+|++...+.+...... |
T Consensus 135 dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 135 NGEIFIWDMNKCTESPSNYTPLT-PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI 213 (416)
T ss_dssp SSCEEBCBTTTTSSCTTTCCCBC-CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCC
T ss_pred CCeEEEEECCCCccccccccccc-cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccccc
Confidence 9999999999876 2110 1112233333333333332 22333345667888999887765543322 1
Q ss_pred CC----eEecCCCCeEEEEecCCCc---eEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245 152 SK----DDVPAEGPKYMAVAGEQLS---EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (270)
Q Consensus 152 ~~----~~~s~~~~~~~~~~~~~d~---~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~ 223 (270)
.. ++|+|++..+++ +++.|+ .|++||++++ .++..+.. +| ...+.+++ |+|. +++ +
T Consensus 214 ~~~v~~~~~~~~~~~~l~-~~~~d~~~~~i~~~d~~~~~~~~~~~~~-------~~----~~~v~~~~-~s~~--~~~-~ 277 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVA-TATGSDNDPSILIWDLRNANTPLQTLNQ-------GH----QKGILSLD-WCHQ--DEH-L 277 (416)
T ss_dssp CCCEEEEEECSSCTTEEE-EEECCSSSCCCCEEETTSTTSCSBCCCS-------CC----SSCEEEEE-ECSS--CSS-C
T ss_pred CCceEEEEECCCCCCEEE-EEECCCCCceEEEEeCCCCCCCcEEeec-------Cc----cCceeEEE-eCCC--CCC-e
Confidence 22 899999876665 455677 9999999986 45555441 23 45688888 9983 344 9
Q ss_pred EEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCC-Cce
Q 024245 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP-ITM 267 (270)
Q Consensus 224 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l 267 (270)
|++++.||.|++||+++ ++++..+.+|...|++++|+|++ .+|
T Consensus 278 l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 278 LLSSGRDNTVLLWNPES-AEQLSQFPARGNWCFKTKFAPEAPDLF 321 (416)
T ss_dssp EEEEESSSEEEEECSSS-CCEEEEEECSSSCCCCEEECTTCTTEE
T ss_pred EEEEeCCCCEEEeeCCC-CccceeecCCCCceEEEEECCCCCCEE
Confidence 99999999999999999 88999999999999999999998 554
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.5e-29 Score=200.58 Aligned_cols=230 Identities=13% Similarity=0.186 Sum_probs=177.7
Q ss_pred ccccccc-ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
....+.. |...|++++|+|++.+|++|+.||.|++||+.+++.+..+..|. ..|.+++|++ +.|++++.||.|
T Consensus 125 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~----~~l~~~~~dg~i 198 (401)
T 4aez_A 125 VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ--ARVGCLSWNR----HVLSSGSRSGAI 198 (401)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEEET----TEEEEEETTSEE
T ss_pred EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCC--CceEEEEECC----CEEEEEcCCCCE
Confidence 3444444 88999999999999999999999999999999999999999888 6699999965 799999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
++||++.... ....+..+......+.+....... .....+...+|++...+.... +..|.. ++|+|++..+
T Consensus 199 ~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l 274 (401)
T 4aez_A 199 HHHDVRIANH---QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-KTNHNAAVKAVAWCPWQSNL 274 (401)
T ss_dssp EEEETTSSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-ECCCSSCCCEEEECTTSTTE
T ss_pred EEEecccCcc---eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-ecCCcceEEEEEECCCCCCE
Confidence 9999985432 233555565555555555433322 233356778899988765543 334444 9999999888
Q ss_pred EEEe-cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE--ecCCCcEEEEEcCC
Q 024245 164 MAVA-GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWDIRN 240 (270)
Q Consensus 164 ~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~--~~~dg~i~vwd~~~ 240 (270)
++++ |+.|+.|++||+++++.+..+.. ...+.+++ |+|+ ++ +|++ |+.||.|++||+.+
T Consensus 275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~-------------~~~v~~~~-~s~~---~~-~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATGARVNTVDA-------------GSQVTSLI-WSPH---SK-EIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EEEECCTTTCEEEEEETTTCCEEEEEEC-------------SSCEEEEE-ECSS---SS-EEEEEECTTTCEEEEEEEET
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEeC-------------CCcEEEEE-ECCC---CC-eEEEEeecCCCcEEEEecCC
Confidence 7744 34799999999999999888872 33578887 9995 44 6777 56899999999998
Q ss_pred CCcce--eeeeccCCCeeEEEeecCCCcee
Q 024245 241 PGIPL--TAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 241 ~~~~~--~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
++.. ..+.+|...|++++|+|+|.+|.
T Consensus 337 -~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (401)
T 4aez_A 337 -SGLTKQVDIPAHDTRVLYSALSPDGRILS 365 (401)
T ss_dssp -TEEEEEEEEECCSSCCCEEEECTTSSEEE
T ss_pred -ccceeEEEecCCCCCEEEEEECCCCCEEE
Confidence 4433 34678999999999999998764
No 57
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=8.4e-30 Score=199.99 Aligned_cols=204 Identities=17% Similarity=0.267 Sum_probs=160.1
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.....+.+|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|. ..|.+++|+|..++++|++++.||+|
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~g~~l~sgs~Dg~v 222 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG--ADVLCLDLAPSETGNTFVSGGCDKKA 222 (354)
T ss_dssp GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECCCSSCCEEEEEETTSCE
T ss_pred ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC--CCeEEEEEEeCCCCCEEEEEeCCCeE
Confidence 3456778899999999999999999999999999999999999999999998 56999999884456899999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccC-CCC-C---eEecCCCCe
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSL-CDS-K---DDVPAEGPK 162 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~---~~~s~~~~~ 162 (270)
++||++++++.. .+..+......+.+...... ......+...+||+...+.+..... .+. . ++|+|++..
T Consensus 223 ~~wd~~~~~~~~----~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 223 MVWDMRSGQCVQ----AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298 (354)
T ss_dssp EEEETTTCCEEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred EEEECCCCcEEE----EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE
Confidence 999999986543 55555555554444433322 2333456678899987765443221 111 1 899999985
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
++ +|+.|+.|++||+.+++.+..+. +|. ..+.+++ |+|+ |+ +|++|+.||+|++|+
T Consensus 299 l~--~g~~d~~i~vwd~~~~~~~~~l~--------~h~----~~v~~l~-~spd---g~-~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 299 LF--AGYNDYTINVWDVLKGSRVSILF--------GHE----NRVSTLR-VSPD---GT-AFCSGSWDHTLRVWA 354 (354)
T ss_dssp EE--EEETTSCEEEEETTTCSEEEEEC--------CCS----SCEEEEE-ECTT---SS-CEEEEETTSEEEEEC
T ss_pred EE--EEECCCcEEEEECCCCceEEEEE--------CCC----CcEEEEE-ECCC---CC-EEEEEcCCCCEEecC
Confidence 54 56679999999999999988888 774 4688888 9995 55 999999999999996
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=5.9e-30 Score=202.98 Aligned_cols=232 Identities=13% Similarity=0.138 Sum_probs=165.6
Q ss_pred CCcccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCceeEEEee--cCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
.++...+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+.. |. ..|.+++|+|. ++++|++++.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~--~~v~~~~~~~~-~~~~l~s~~~ 139 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPG--DAITGMKFNQF-NTNQLFVSSI 139 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTT--CBEEEEEEETT-EEEEEEEEET
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcC--CceeEEEeCCC-CCCEEEEEeC
Confidence 35677889999999999999998 8999999999999999998888877764 55 77999999983 2478999999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
|+.|++||+++..... .............+.+...... ......+...+|++. ++ ....+.+|.. ++|+|+
T Consensus 140 d~~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 140 RGATTLRDFSGSVIQV--FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TTEEEEEETTSCEEEE--EECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSS
T ss_pred CCEEEEEECCCCceEE--EeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCC
Confidence 9999999998643211 1111111223333333332222 223334566778884 33 3334455655 899999
Q ss_pred CCeEEEEecCCCceEEEEeCCC----cceeeeeccCcCCCCCCcccCCCceeeeeeecCC-CCCCCceEEEEecCCCcEE
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNT----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAGYEDGSIL 234 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p-~~~~g~~~l~~~~~dg~i~ 234 (270)
++.+++ +++.|+.|++||+++ +.++..+. | ...+.+++ |+| + +. +|++++.||.|+
T Consensus 216 ~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~---------~----~~~v~~~~-~s~~~---~~-~l~~~~~d~~i~ 276 (383)
T 3ei3_B 216 CDWLMA-TSSVDATVKLWDLRNIKDKNSYIAEMP---------H----EKPVNAAY-FNPTD---ST-KLLTTDQRNEIR 276 (383)
T ss_dssp CTTEEE-EEETTSEEEEEEGGGCCSTTCEEEEEE---------C----SSCEEEEE-ECTTT---SC-EEEEEESSSEEE
T ss_pred CCCEEE-EEeCCCEEEEEeCCCCCcccceEEEec---------C----CCceEEEE-EcCCC---CC-EEEEEcCCCcEE
Confidence 985555 566799999999998 44555543 3 45788888 999 5 44 999999999999
Q ss_pred EEEcCCCCcceeeeeccC-----------------CCeeEEEeecCCCc
Q 024245 235 VWDIRNPGIPLTAMKVHL-----------------EPGLECSMWRNPIT 266 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~~-----------------~~v~~~~~s~~g~~ 266 (270)
+||+++ ++....+.+|. ..+..++|+|||++
T Consensus 277 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~ 324 (383)
T 3ei3_B 277 VYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL 324 (383)
T ss_dssp EEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT
T ss_pred EEECCC-CccccccccccccccccccceEEeccCCCCceEEEecCCccc
Confidence 999998 66666666553 23444677776655
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.8e-30 Score=205.63 Aligned_cols=241 Identities=13% Similarity=0.166 Sum_probs=176.0
Q ss_pred CcccccccccccEEEEEEeCC----C---CEEEEecCCCcEEEEeCCCCce-----eEEEeecCC---CcceEEEEEe--
Q 024245 9 DPVAVLRGHRASVTDVCFHQT----K---PILFAGTTGGELRIWDTVQHRT-----VSSSWVHSA---AHGIVSVATG-- 71 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~----~---~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~---~~~v~~~~~~-- 71 (270)
+++..+.+|...|++++|+|+ + .+|++++.||.|++||+.+++. ...+..|.. ...|.+++|+
T Consensus 53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence 467888999999999999999 9 9999999999999999998886 778877731 1669999999
Q ss_pred --eCCCCCE-EEEEeCCCcEEEEEccC------CccCC-CCcccee-------cccceEEEEeeccCCccceecCCCCce
Q 024245 72 --PSIGLNK-VISQGRDGTVKCWDIEN------GGLSS-NPSLTIK-------TNSYHFCKLSLVKEPYANAKQANEPKD 134 (270)
Q Consensus 72 --~~~~~~~-l~s~~~d~~i~~wd~~~------~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (270)
| ++++ |++++.||.|++||+++ ++... .+...+. .+......+.+............+...
T Consensus 133 ~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~ 210 (397)
T 1sq9_A 133 NDR--LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQ 210 (397)
T ss_dssp C------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEE
T ss_pred cCC--CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEE
Confidence 8 8899 99999999999999998 54322 1111232 123333333333333222233345677
Q ss_pred EEEeccCceeeeccCC---C---CC----eEecCCCCeEEEEecCCC---ceEEEEeCCCcceeeeeccCcCC-----CC
Q 024245 135 CYEREVGETVDTDSLC---D---SK----DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCG-----GS 196 (270)
Q Consensus 135 ~~~~~~~~~~~~~~~~---~---~~----~~~s~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~-----~~ 196 (270)
+|++...+.+.. +.. | .. ++|+|++..++ +++.| +.|++||+++++.+..+...... ..
T Consensus 211 i~d~~~~~~~~~-~~~~~~h~~~~~~i~~i~~~~~~~~l~--~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 287 (397)
T 1sq9_A 211 ISELSTLRPLYN-FESQHSMINNSNSIRSVKFSPQGSLLA--IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 287 (397)
T ss_dssp EEETTTTEEEEE-EECCC---CCCCCEEEEEECSSTTEEE--EEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred EEECCCCceeEE-EeccccccccCCccceEEECCCCCEEE--EEecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence 789887765543 333 4 33 89999998655 45568 99999999999988888720000 00
Q ss_pred CCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee------cc---------------CCCe
Q 024245 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK------VH---------------LEPG 255 (270)
Q Consensus 197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~---------------~~~v 255 (270)
..| ...+.+++ |+|+ ++ +|++++.||.|++||+++ ++++..+. +| ...|
T Consensus 288 ~~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v 357 (397)
T 1sq9_A 288 FAH----SSWVMSLS-FNDS---GE-TLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 357 (397)
T ss_dssp BSB----SSCEEEEE-ECSS---SS-EEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred ccc----CCcEEEEE-ECCC---CC-EEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCCce
Confidence 004 34678888 9995 44 999999999999999999 88899998 88 9999
Q ss_pred eEEEeecCC
Q 024245 256 LECSMWRNP 264 (270)
Q Consensus 256 ~~~~~s~~g 264 (270)
++++|+|+|
T Consensus 358 ~~~~~~~~g 366 (397)
T 1sq9_A 358 FDVKFLKKG 366 (397)
T ss_dssp EEEEEECTT
T ss_pred eEEEecccc
Confidence 999999998
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-29 Score=196.58 Aligned_cols=235 Identities=11% Similarity=0.089 Sum_probs=182.3
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC--
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-- 85 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-- 85 (270)
.+++..+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+. +. ..|.+++|+| ++++|++++.+
T Consensus 64 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~--~~v~~~~~~~--~~~~l~~~~~~~~ 138 (369)
T 3zwl_B 64 GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SP--VPVKRVEFSP--CGNYFLAILDNVM 138 (369)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CS--SCEEEEEECT--TSSEEEEEECCBT
T ss_pred chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cC--CCeEEEEEcc--CCCEEEEecCCcc
Confidence 36778899999999999999999999999999999999999999998887 54 6699999999 99999999998
Q ss_pred ---CcEEEEEccCCccCC-------CCccceecccc--eEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCC
Q 024245 86 ---GTVKCWDIENGGLSS-------NPSLTIKTNSY--HFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDS 152 (270)
Q Consensus 86 ---~~i~~wd~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (270)
+.|++||+....... .+...+..+.. ....+.+...... ......+...+|++.........+..|.
T Consensus 139 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 218 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE 218 (369)
T ss_dssp TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence 999999998775432 11122222222 2333333322222 2223345677899988555555565565
Q ss_pred C----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec
Q 024245 153 K----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (270)
Q Consensus 153 ~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~ 228 (270)
. ++|+|++..++ +++.|+.|++||+++++.+..+.. ...+..+. |+|+ ++ ++++++
T Consensus 219 ~~v~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~-~~~~---~~-~l~~~~ 278 (369)
T 3zwl_B 219 KSISDMQFSPDLTYFI--TSSRDTNSFLVDVSTLQVLKKYET-------------DCPLNTAV-ITPL---KE-FIILGG 278 (369)
T ss_dssp SCEEEEEECTTSSEEE--EEETTSEEEEEETTTCCEEEEEEC-------------SSCEEEEE-ECSS---SS-EEEEEE
T ss_pred CceeEEEECCCCCEEE--EecCCceEEEEECCCCceeeeecC-------------CCCceeEE-ecCC---Cc-eEEEee
Confidence 5 89999998665 455689999999999998888872 34577777 9995 44 888888
Q ss_pred CCC--------------cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 229 EDG--------------SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 229 ~dg--------------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.++ .+++||+.+ ++++..+.+|...|++++|+|++.+|.
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~ 331 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPLNTVAISPQGTSYA 331 (369)
T ss_dssp CCC-------------CEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred cCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcEEEEEECCCCCEEE
Confidence 888 899999999 889999999999999999999998764
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=3.8e-30 Score=201.84 Aligned_cols=240 Identities=12% Similarity=0.124 Sum_probs=170.2
Q ss_pred CCCCCCCCCcccccccccccEEEEEEeCCCC-EEEEecC---CCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCC
Q 024245 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKP-ILFAGTT---GGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIG 75 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~---dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 75 (270)
|.....|......+++|...|++++|+|++. ++++|+. |+.|++||+.+++...... .|. ..|.+++|+| +
T Consensus 1 m~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~--~~v~~~~~~~--~ 76 (357)
T 3i2n_A 1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA--KPIKCGTFGA--T 76 (357)
T ss_dssp ----CCCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES--SCEEEEECTT--C
T ss_pred CCccChhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc--CcEEEEEEcC--C
Confidence 5555555445566788999999999999886 5566766 9999999999887665443 565 6699999999 7
Q ss_pred ---CCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeec----cCCcc---ceecCCCCceEEEeccCceee
Q 024245 76 ---LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV----KEPYA---NAKQANEPKDCYEREVGETVD 145 (270)
Q Consensus 76 ---~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~ 145 (270)
+++|++++.||.|++||+.+++ .+...+..+......+... +.+.. ......+...+|++...+...
T Consensus 77 ~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 77 SLQQRYLATGDFGGNLHIWNLEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp CTTTCCEEEEETTSCEEEECTTSCS---SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS
T ss_pred CCCCceEEEecCCCeEEEEeCCCCC---ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc
Confidence 6999999999999999999876 1234555555555544332 22332 223345567889988776333
Q ss_pred eccCCCC---C-----eE----ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeec
Q 024245 146 TDSLCDS---K-----DD----VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 213 (270)
Q Consensus 146 ~~~~~~~---~-----~~----~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 213 (270)
..+..+. . ++ |+|++..++ +++.|+.|++||+++++...... | ...+.++. |
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~---------~----~~~v~~~~-~ 217 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVC--AGYDNGDIKLFDLRNMALRWETN---------I----KNGVCSLE-F 217 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEE--EEETTSEEEEEETTTTEEEEEEE---------C----SSCEEEEE-E
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEE--EEccCCeEEEEECccCceeeecC---------C----CCceEEEE-c
Confidence 3332222 1 44 778997554 46678999999999988755543 3 34678887 9
Q ss_pred CCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee-----ccCCCeeEEEeecCCC
Q 024245 214 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPGLECSMWRNPI 265 (270)
Q Consensus 214 ~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~s~~g~ 265 (270)
+|...++. +|++++.||.|++||+++ +++...+. +|...|++++|+|++.
T Consensus 218 ~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 218 DRKDISMN-KLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNR 272 (357)
T ss_dssp SCSSSSCC-EEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred CCCCCCCC-EEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCC
Confidence 98322344 899999999999999998 66655554 8999999999999987
No 62
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.4e-29 Score=193.47 Aligned_cols=213 Identities=15% Similarity=0.228 Sum_probs=156.8
Q ss_pred Cccccc--ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecC--------------------------
Q 024245 9 DPVAVL--RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-------------------------- 60 (270)
Q Consensus 9 ~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------------------------- 60 (270)
++++++ .+|...|++++|+|++++|++|+.||.|++||+++++++..+.+|.
T Consensus 56 ~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 135 (318)
T ss_dssp CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeee
Confidence 445544 4688899999999999999999999999999999887766554332
Q ss_pred -------------CCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc-cce
Q 024245 61 -------------AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANA 126 (270)
Q Consensus 61 -------------~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 126 (270)
+...+..+.+.+ ++++|++++.|++|++||+++++.......................... ...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (318)
T 4ggc_A 136 VRVAEHHVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213 (318)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred cCCCceeEEEEcCccCceEEEEEcC--CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence 114477778888 8899999999999999999987654433333333333333333332222 222
Q ss_pred ecCC---CCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCccc
Q 024245 127 KQAN---EPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS 201 (270)
Q Consensus 127 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~ 201 (270)
...+ ....+|+................ +.|+|++..+++++|+.|+.|+|||+++++++.++. +|.
T Consensus 214 ~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--------gH~- 284 (318)
T 4ggc_A 214 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--------GHT- 284 (318)
T ss_dssp EEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--------CCS-
T ss_pred EEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--------CCC-
Confidence 2222 34566777766655443333322 889999999988888889999999999999999998 784
Q ss_pred CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 202 ~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
..+.+++ |+|+ |+ +|++|+.||+|+|||+.+
T Consensus 285 ---~~V~~l~-~spd---g~-~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 285 ---SRVLSLT-MSPD---GA-TVASAAADETLRLWRCFE 315 (318)
T ss_dssp ---SCEEEEE-ECTT---SS-CEEEEETTTEEEEECCSC
T ss_pred ---CCEEEEE-EcCC---CC-EEEEEecCCeEEEEECCC
Confidence 4688888 9995 55 899999999999999976
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.3e-30 Score=203.99 Aligned_cols=222 Identities=13% Similarity=0.187 Sum_probs=172.7
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
+|.+.|++++|+|++++|++|+.||.|++|| .+++.+..+..|. ..|.+++|+| ++++|++++.|+.|++||+.+
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR--APIVSVKWNK--DGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCC--SCEEEEEECT--TSSEEEEEETTCCEEEEETTT
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCC--ccEEEEEECC--CCCEEEEEecCCeEEEEECCC
Confidence 3788999999999999999999999999999 6678888888888 6699999999 999999999999999999988
Q ss_pred CccCCCCccceecccce---------------EEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEe
Q 024245 96 GGLSSNPSLTIKTNSYH---------------FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV 156 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (270)
++... .+...... ...+.+............+...+|++...+.+.. +.+|.. ++|
T Consensus 181 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 181 GTVMQ----HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGK-LIGHHGPISVLEF 255 (425)
T ss_dssp TEEEE----EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEE-ECCCSSCEEEEEE
T ss_pred CcEEE----EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeee-eccCCCceEEEEE
Confidence 76543 22221111 2222222223333344456677788887755443 344544 899
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
+|+++.++ +++.|+.|++||+++++.+..+. +| ...+.++. |+|+ + +|++++.||.|++|
T Consensus 256 ~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~--~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 256 NDTNKLLL--SASDDGTLRIWHGGNGNSQNCFY--------GH----SQSIVSAS-WVGD---D--KVISCSMDGSVRLW 315 (425)
T ss_dssp ETTTTEEE--EEETTSCEEEECSSSBSCSEEEC--------CC----SSCEEEEE-EETT---T--EEEEEETTSEEEEE
T ss_pred CCCCCEEE--EEcCCCEEEEEECCCCccceEec--------CC----CccEEEEE-ECCC---C--EEEEEeCCCcEEEE
Confidence 99998554 45678999999999999888887 55 34677887 9984 4 79999999999999
Q ss_pred EcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 237 DIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 237 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
|+++ ++++..+..|...|.+++|+|++.+|.
T Consensus 316 d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 316 SLKQ-NTLLALSIVDGVPIFAGRISQDGQKYA 346 (425)
T ss_dssp ETTT-TEEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred ECCC-CcEeEecccCCccEEEEEEcCCCCEEE
Confidence 9998 888999999999999999999998764
No 64
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-30 Score=222.38 Aligned_cols=238 Identities=14% Similarity=0.120 Sum_probs=171.5
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCC--CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|. .+|.+++|+|..++++|++++.||.|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~--~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS--SCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCc--CceEEEEecCCCCCCEEEEEeCCCeE
Confidence 46789999999999999999999999999999999998 456777888887 66999999982228999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccC--C-ccceecCCCCceEEEeccCce-eeeccCCCCC----eEecCC-
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--P-YANAKQANEPKDCYEREVGET-VDTDSLCDSK----DDVPAE- 159 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~s~~- 159 (270)
++||+.+++... ......+......+.+... . ........+...+|++..... ....+.+|.. ++|+|.
T Consensus 80 ~vwd~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 80 LIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEEETTEEEE--EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EEEECCCCcccc--cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 999999875321 3344445555554444443 2 223344456677899887632 2233445554 889994
Q ss_pred ------------CCeEEEEecCCCceEEEEeCCCcc----eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245 160 ------------GPKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (270)
Q Consensus 160 ------------~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~ 223 (270)
+..++ +|+.||.|++||++++. ....+. +| ...+.+++ |+|+...+. +
T Consensus 158 ~~~~~~~~~~~d~~~l~--sgs~dg~I~iwd~~~~~~~~~~~~~~~--------~h----~~~V~~l~-~sp~~~~~~-~ 221 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFV--TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS-Y 221 (753)
T ss_dssp ---------CGGGCCEE--EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE-E
T ss_pred cccccccccCCCCCEEE--EEECCCeEEEEeccCCcccceeeeeec--------CC----CCcEEEEE-eccCCCCCC-E
Confidence 65444 56679999999998774 445555 55 44688888 999621155 9
Q ss_pred EEEecCCCcEEEEEcCCCCc----ceeeeeccCCCeeEEEeecCCCcee
Q 024245 224 VLAGYEDGSILVWDIRNPGI----PLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 224 l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
|++|+.||.|++||+++... .......|...|++++|+|+|.+|.
T Consensus 222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 270 (753)
T 3jro_A 222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 270 (753)
T ss_dssp EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEE
T ss_pred EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEE
Confidence 99999999999999998321 3344456889999999999998764
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.1e-29 Score=206.33 Aligned_cols=223 Identities=17% Similarity=0.243 Sum_probs=177.9
Q ss_pred CcccccccccccE-EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 9 DPVAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 9 ~~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.....+++|...| .++.+ ++.+|++|+.||.|++||+.+++.+..+.+|. ..|.+++|+| ++ .|++++.||+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--~~V~~l~~~~--~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAH--GG-ILVSGSTDRT 184 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECS--TT-EEEEEETTSC
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC--cCEEEEEEcC--CC-EEEEEeCCCC
Confidence 4567899998885 66666 46799999999999999999999999999998 6699999998 75 9999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCc---cceecCCCCceEEEeccCcee--------------------
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY---ANAKQANEPKDCYEREVGETV-------------------- 144 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------------------- 144 (270)
|++||+++++... .+..+......+.+...+. .......+...+|++......
T Consensus 185 i~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 185 VRVWDIKKGCCTH----VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp EEEEETTTTEEEE----EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred EEEEECCCCcEEE----EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence 9999999886543 5555555555555554332 233444566778988766533
Q ss_pred --eeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245 145 --DTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220 (270)
Q Consensus 145 --~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g 220 (270)
...+.+|.. .++++++..++ +++.|+.|++||+++++++..+. +|. ..+.+++ |+|+ +
T Consensus 261 ~~~~~~~~~~~~v~~~~~~~~~l~--~~~~d~~i~vwd~~~~~~~~~~~--------~~~----~~v~~~~-~~~~---~ 322 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTVSGHGNIVV--SGSYDNTLIVWDVAQMKCLYILS--------GHT----DRIYSTI-YDHE---R 322 (464)
T ss_dssp TEEEEECCCSSCEEEEEEETTEEE--EEETTSCEEEEETTTTEEEEEEC--------CCS----SCEEEEE-EETT---T
T ss_pred EEEEEccCccceEEEEcCCCCEEE--EEeCCCeEEEEECCCCcEEEEec--------CCC----CCEEEEE-EcCC---C
Confidence 234556666 67788887655 46679999999999999999888 663 4678887 9995 4
Q ss_pred ceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245 221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 221 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
. +|++|+.||.|++||+++ ++++..+.+|...|.+++|++
T Consensus 323 ~-~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~ 362 (464)
T 3v7d_B 323 K-RCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSD 362 (464)
T ss_dssp T-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECS
T ss_pred C-EEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEEEEEEcC
Confidence 4 999999999999999999 899999999999999999984
No 66
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=3.2e-30 Score=207.56 Aligned_cols=233 Identities=14% Similarity=0.160 Sum_probs=176.8
Q ss_pred cccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCC----------CceeEEEeecCCCcceEEEEEeeCCCCC-EE
Q 024245 12 AVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ----------HRTVSSSWVHSAAHGIVSVATGPSIGLN-KV 79 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l 79 (270)
....+|.+.|++++|+|+ +.+|++++.||.|++||+.+ .+.+..+.+|. ..|.+++|+| ++. +|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~--~~~~~l 197 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ--KEGYGLSWNP--NLNGYL 197 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS--SCCCCEEECT--TSTTEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC--CCeEEEEeCC--CCCCeE
Confidence 456679999999999997 77999999999999999986 56777888888 5699999999 777 99
Q ss_pred EEEeCCCcEEEEEccCCccCC---CCccceecccceEEEEeecc--CCccceecCCCCceEEEeccCc--eeeeccCCCC
Q 024245 80 ISQGRDGTVKCWDIENGGLSS---NPSLTIKTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGE--TVDTDSLCDS 152 (270)
Q Consensus 80 ~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 152 (270)
++++.||.|++||+.++.... .+...+..+......+.+.. ..........+.+.+|+++... .....+..|.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 999999999999998743211 11223334444444444443 2222333446677889998763 2333344555
Q ss_pred C----eEecCCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245 153 K----DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 153 ~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
. ++|+|+++++++ +|+.||.|++||+++ +.++..+. +| ...+.++. |+|+ ++.+|+++
T Consensus 278 ~~v~~i~~~p~~~~~l~-tg~~dg~v~vwd~~~~~~~~~~~~--------~h----~~~v~~i~-~sp~---~~~~l~s~ 340 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFE--------SH----KDEIFQVQ-WSPH---NETILASS 340 (430)
T ss_dssp SCEEEEEECSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEE--------CC----SSCEEEEE-ECSS---CTTEEEEE
T ss_pred CCeEEEEeCCCCCCEEE-EEeCCCeEEEEeCCCCCCCeEEee--------cC----CCCEEEEE-ECCC---CCCEEEEE
Confidence 5 899999987776 566799999999998 55677777 56 44688888 9995 33389999
Q ss_pred cCCCcEEEEEcCCCC-------------cceeeeeccCCCeeEEEeecCCC
Q 024245 228 YEDGSILVWDIRNPG-------------IPLTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 228 ~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~v~~~~~s~~g~ 265 (270)
+.||.|++||+...+ +.+..+.+|...|++++|+|++.
T Consensus 341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 391 (430)
T 2xyi_A 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 391 (430)
T ss_dssp ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST
T ss_pred eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC
Confidence 999999999998632 56677788999999999999998
No 67
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=1.3e-28 Score=191.58 Aligned_cols=223 Identities=13% Similarity=0.213 Sum_probs=169.9
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|. ..|.+++|+| ++++|++++.|+.|++||+
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~l~~~~~dg~v~~~d~ 170 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA--PACYALAISP--DSKVCFSCCSDGNIAVWDL 170 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS--SCEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC--CceEEEEECC--CCCEEEEEeCCCcEEEEeC
Confidence 799999999999999999999999999999999877 555666676 6699999999 9999999999999999999
Q ss_pred cCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEecCC
Q 024245 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQ 170 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~ 170 (270)
++++... .+..+......+.+....... .....+...+|++..++........... ++|+|+++.++ +++.
T Consensus 171 ~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~ 244 (337)
T 1gxr_A 171 HNQTLVR----QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGME 244 (337)
T ss_dssp TTTEEEE----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEE--EEET
T ss_pred CCCceee----eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEE--EEcC
Confidence 9876533 444444444444444333222 2333556778998887765543211111 89999998665 3556
Q ss_pred CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
|+.|++||+++++.. .+. +| ...+.++. |+|+ ++ +|++++.||.|++||+.+ ++.+... .
T Consensus 245 ~~~i~~~~~~~~~~~-~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~i~~~~~~~-~~~~~~~-~ 304 (337)
T 1gxr_A 245 SSNVEVLHVNKPDKY-QLH--------LH----ESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-GASIFQS-K 304 (337)
T ss_dssp TSCEEEEETTSSCEE-EEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEEETTT-CCEEEEE-E
T ss_pred CCcEEEEECCCCCeE-EEc--------CC----ccceeEEE-ECCC---CC-EEEEecCCCcEEEEECCC-CeEEEEe-c
Confidence 899999999987754 344 44 34678887 9995 44 899999999999999998 6666444 4
Q ss_pred cCCCeeEEEeecCCCcee
Q 024245 251 HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 251 ~~~~v~~~~~s~~g~~ls 268 (270)
|...|.+++|+|++.+|.
T Consensus 305 ~~~~v~~~~~s~~~~~l~ 322 (337)
T 1gxr_A 305 ESSSVLSCDISVDDKYIV 322 (337)
T ss_dssp CSSCEEEEEECTTSCEEE
T ss_pred CCCcEEEEEECCCCCEEE
Confidence 788999999999998763
No 68
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=3.7e-29 Score=191.78 Aligned_cols=212 Identities=18% Similarity=0.223 Sum_probs=154.1
Q ss_pred CcccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245 9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (270)
+++.++.+|.+.|++++|++ ++++|++|+.|++|+|||+++++ .+..+..|. ..|.+++|+|...+.+|++++.
T Consensus 44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~g~~l~s~s~ 121 (297)
T 2pm7_B 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPMLLVASS 121 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEET
T ss_pred EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC--CceeEEEeCcCCCCcEEEEEEC
Confidence 57789999999999999986 48999999999999999998874 555667777 6699999999212789999999
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccC--------------CccceecCCCCceEEEeccCce---eeec
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--------------PYANAKQANEPKDCYEREVGET---VDTD 147 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~---~~~~ 147 (270)
|++|++||++++.... ...+..+......+.+... .........+.+.+|++...+. ....
T Consensus 122 d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~ 199 (297)
T 2pm7_B 122 DGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (297)
T ss_dssp TSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEecCCCcee--eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE
Confidence 9999999998764221 2334444444443333322 1222334456778899887652 3446
Q ss_pred cCCCCC----eEecCCC--CeEEEEecCCCceEEEEeCCCcce--e-eeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245 148 SLCDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAER--C-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218 (270)
Q Consensus 148 ~~~~~~----~~~s~~~--~~~~~~~~~~d~~i~iwd~~~~~~--~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~ 218 (270)
+.+|.. ++|+|++ ..+++ +++.|++|+|||++.... . ..+... +| ...+++++ |+|+
T Consensus 200 l~~H~~~V~~v~~sp~~~~~~~la-s~s~D~~v~iWd~~~~~~~~~~~~~~~~------~~----~~~v~~~~-~s~~-- 265 (297)
T 2pm7_B 200 LEGHSDWVRDVAWSPTVLLRSYMA-SVSQDRTCIIWTQDNEQGPWKKTLLKEE------KF----PDVLWRAS-WSLS-- 265 (297)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEESSSS------CC----SSCEEEEE-ECSS--
T ss_pred ecCCCCceEEEEECCCCCCceEEE-EEECCCcEEEEEeCCCCCccceeeeecc------cC----CCcEEEEE-ECCC--
Confidence 778877 8999996 34554 677899999999986431 1 222100 23 45688888 9995
Q ss_pred CCceEEEEecCCCcEEEEEcCC
Q 024245 219 QGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 219 ~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
|+ +|++++.||.|++|+...
T Consensus 266 -g~-~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 266 -GN-VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp -SC-CEEEEETTSCEEEEEECT
T ss_pred -CC-EEEEEcCCCcEEEEEECC
Confidence 55 899999999999999875
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=8.9e-29 Score=200.99 Aligned_cols=233 Identities=13% Similarity=0.174 Sum_probs=178.6
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+++..+.+|.+.|++++|+|++ +|++|+.||.|++||+++++.+..+.+|. ..|.+++|++..++++|++++.|++
T Consensus 152 ~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEEESSSCEEEEEEETTSC
T ss_pred CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCC--CccEEEEEecCCCCCEEEEEcCCCc
Confidence 35778899999999999999988 99999999999999999999999999888 6699999996447789999999999
Q ss_pred EEEEEccCCccCCCC-------------------ccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc
Q 024245 88 VKCWDIENGGLSSNP-------------------SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS 148 (270)
Q Consensus 88 i~~wd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (270)
|++||++++...... ......+......++... .........+...+|++.+.+.+. .+
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~-~~ 306 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG-NIVVSGSYDNTLIVWDVAQMKCLY-IL 306 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEET-TEEEEEETTSCEEEEETTTTEEEE-EE
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEE-Ee
Confidence 999999887543210 112223333333333222 122333445677889998776655 44
Q ss_pred CCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245 149 LCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (270)
Q Consensus 149 ~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (270)
.+|.. ++|+|+++.++ +|+.|+.|++||+++++++.++. +|. ..+.++. |++. +|
T Consensus 307 ~~~~~~v~~~~~~~~~~~l~--sg~~dg~i~vwd~~~~~~~~~~~--------~h~----~~v~~~~-~~~~------~l 365 (464)
T 3v7d_B 307 SGHTDRIYSTIYDHERKRCI--SASMDTTIRIWDLENGELMYTLQ--------GHT----ALVGLLR-LSDK------FL 365 (464)
T ss_dssp CCCSSCEEEEEEETTTTEEE--EEETTSCEEEEETTTTEEEEEEC--------CCS----SCEEEEE-ECSS------EE
T ss_pred cCCCCCEEEEEEcCCCCEEE--EEeCCCcEEEEECCCCcEEEEEe--------CCC----CcEEEEE-EcCC------EE
Confidence 55655 89999998655 56679999999999999999998 663 4577777 8753 99
Q ss_pred EEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 225 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
++|+.||.|++||+++ ........ +...+..++|+|++.+|.
T Consensus 366 ~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~ 407 (464)
T 3v7d_B 366 VSAAADGSIRGWDAND-YSRKFSYH-HTNLSAITTFYVSDNILV 407 (464)
T ss_dssp EEEETTSEEEEEETTT-CCEEEEEE-CTTCCCEEEEEECSSEEE
T ss_pred EEEeCCCcEEEEECCC-Cceeeeec-CCCCccEEEEEeCCCEEE
Confidence 9999999999999998 55544443 567788899999998764
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=2e-29 Score=217.83 Aligned_cols=232 Identities=17% Similarity=0.173 Sum_probs=185.1
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+.+..+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|. ..|.+++|+| ++.+|++++.||.
T Consensus 45 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~~dg~ 120 (814)
T 3mkq_A 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHP--TKPYVLSGSDDLT 120 (814)
T ss_dssp TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS--SSSEEEEEETTSE
T ss_pred CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC--CCEEEEEEeC--CCCEEEEEcCCCE
Confidence 35678888999999999999999999999999999999999999999999888 6699999999 9999999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeecc-C-CccceecCCCCceEEEeccCceeeeccCCCCC----eEecC--C
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-E-PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--E 159 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~--~ 159 (270)
|++||+.++... ...+..+......+.+.. . .........+...+|++............+.. ++|+| +
T Consensus 121 i~vw~~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 121 VKLWNWENNWAL---EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197 (814)
T ss_dssp EEEEEGGGTSEE---EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTT
T ss_pred EEEEECCCCceE---EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCC
Confidence 999999876321 223444444444444433 1 12233344566778998776655544444422 89998 7
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
+..++ +++.||.|++||+++++.+..+. +| ...+.+++ |+|+ ++ +|++++.||.|++||+.
T Consensus 198 ~~~l~--~~~~dg~i~~~d~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 198 KPYMI--TASDDLTIKIWDYQTKSCVATLE--------GH----MSNVSFAV-FHPT---LP-IIISGSEDGTLKIWNSS 258 (814)
T ss_dssp CCEEE--EECTTSEEEEEETTTTEEEEEEE--------CC----SSCEEEEE-ECSS---SS-EEEEEETTSCEEEEETT
T ss_pred CCEEE--EEeCCCEEEEEECCCCcEEEEEc--------CC----CCCEEEEE-EcCC---CC-EEEEEeCCCeEEEEECC
Confidence 77554 56679999999999999988888 56 34677887 9995 44 99999999999999999
Q ss_pred CCCcceeeeeccCCCeeEEEeecCCCc
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
+ ++.+..+..|...+.+++|+|+|..
T Consensus 259 ~-~~~~~~~~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 259 T-YKVEKTLNVGLERSWCIATHPTGRK 284 (814)
T ss_dssp T-CSEEEEECCSSSSEEEEEECTTCGG
T ss_pred C-CcEEEEeecCCCcEEEEEEccCCCc
Confidence 8 8889999999999999999999873
No 71
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=3.9e-29 Score=194.50 Aligned_cols=225 Identities=16% Similarity=0.187 Sum_probs=170.9
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce---eEEEe--ecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
..+|...|++++|+|++++|++++ ||.|++||+.+++. +..+. .|. ..|.+++|+| ++++|++++.|+.|
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD--NYIRSCKLLP--DGCTLIVGGEASTL 121 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT--SBEEEEEECT--TSSEEEEEESSSEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCC--CcEEEEEEcC--CCCEEEEEcCCCcE
Confidence 347999999999999999999999 99999999987653 33444 455 6799999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~ 163 (270)
++||+++++... ...+..+......+.+...... ......+...+|++..++... .+.+|.. ++|+|+++.+
T Consensus 122 ~~~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l 198 (337)
T 1gxr_A 122 SIWDLAAPTPRI--KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISNDGTKL 198 (337)
T ss_dssp EEEECCCC--EE--EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCCcce--eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-eeecccCceEEEEECCCCCEE
Confidence 999999876321 3344444444444444433322 233345677889998876554 3444554 8999999865
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
+ +++.|+.|++||+++++.+..+. ....+.+++ |+|+ ++ +|++++.||.|++||+++ .+
T Consensus 199 ~--~~~~dg~i~~~d~~~~~~~~~~~-------------~~~~v~~~~-~s~~---~~-~l~~~~~~~~i~~~~~~~-~~ 257 (337)
T 1gxr_A 199 W--TGGLDNTVRSWDLREGRQLQQHD-------------FTSQIFSLG-YCPT---GE-WLAVGMESSNVEVLHVNK-PD 257 (337)
T ss_dssp E--EEETTSEEEEEETTTTEEEEEEE-------------CSSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTS-SC
T ss_pred E--EEecCCcEEEEECCCCceEeeec-------------CCCceEEEE-ECCC---CC-EEEEEcCCCcEEEEECCC-CC
Confidence 5 45569999999999998887776 234577887 9995 44 999999999999999997 44
Q ss_pred ceeeeeccCCCeeEEEeecCCCcee
Q 024245 244 PLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 244 ~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
...+..|...|.+++|+|++.+|.
T Consensus 258 -~~~~~~~~~~v~~~~~~~~~~~l~ 281 (337)
T 1gxr_A 258 -KYQLHLHESCVLSLKFAYCGKWFV 281 (337)
T ss_dssp -EEEECCCSSCEEEEEECTTSSEEE
T ss_pred -eEEEcCCccceeEEEECCCCCEEE
Confidence 356778999999999999998763
No 72
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=4.4e-29 Score=224.49 Aligned_cols=241 Identities=12% Similarity=0.161 Sum_probs=186.3
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
....+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|. ..|.+++|+| ++++|++++.|+.|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~--~~v~~~~~s~--~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSS--DDSYIATCSADKKVK 682 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCC--CCEEEEEEec--CCCEEEEEeCCCeEE
Confidence 345678999999999999999999999999999999999999999999888 6699999999 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCcc---ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCe
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA---NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK 162 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~ 162 (270)
+||+.+++... .+..+......+.+...... ......+...+|++.+++... .+.+|.. ++|+|+++.
T Consensus 683 vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~sp~~~~ 757 (1249)
T 3sfz_A 683 IWDSATGKLVH----TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-TMFGHTNSVNHCRFSPDDEL 757 (1249)
T ss_dssp EEETTTCCEEE----EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-EECCCSSCEEEEEECSSTTE
T ss_pred EEECCCCceEE----EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-eecCCCCCEEEEEEecCCCE
Confidence 99999986543 55566555555555443232 233345667889998887655 4456665 899999985
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCC-------------------CC------------------------c
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS-------------------PN------------------------F 199 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------------------~~------------------------h 199 (270)
++ +++.||.|++||+++++....+........ .+ .
T Consensus 758 l~--s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 758 LA--SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp EE--EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred EE--EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEE
Confidence 54 566799999999998876655432110000 00 0
Q ss_pred ccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
.......+.+++ |+|+ +. ++++++.||.|++||+.+ +..+..+.+|...|++++|+|+|.+|
T Consensus 836 ~~~~~~~v~~~~-~sp~---~~-~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 836 HTGHHSTIQYCD-FSPY---DH-LAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp ECSSSSCCCEEE-ECSS---TT-EEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred cCCCCCceEEEE-EcCC---CC-EEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEEEECCCCCEE
Confidence 001234566676 8885 44 999999999999999998 88899999999999999999999865
No 73
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=6.8e-30 Score=206.45 Aligned_cols=235 Identities=15% Similarity=0.203 Sum_probs=166.0
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-----------eeEEEeecCCC----------cceEEEEEeeCCC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----------TVSSSWVHSAA----------HGIVSVATGPSIG 75 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~----------~~v~~~~~~~~~~ 75 (270)
|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|..+ ..|.+++|+| +
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~--~ 104 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP--Q 104 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC--C
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC--C
Confidence 67899999999999999999999999999998776 47778888622 5599999999 7
Q ss_pred C--CEEEEEeCCCcEEEEEccCCccCC----------------------CCc-------------cc-eecccceEEEEe
Q 024245 76 L--NKVISQGRDGTVKCWDIENGGLSS----------------------NPS-------------LT-IKTNSYHFCKLS 117 (270)
Q Consensus 76 ~--~~l~s~~~d~~i~~wd~~~~~~~~----------------------~~~-------------~~-~~~~~~~~~~~~ 117 (270)
+ .+|++++.|++|++||+.++.... .+. .. ...+......+.
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 6 789999999999999997643210 000 00 122333333333
Q ss_pred eccCCccceecCCCCceEEEeccCceeee-------ccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcce--
Q 024245 118 LVKEPYANAKQANEPKDCYEREVGETVDT-------DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-- 184 (270)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~-- 184 (270)
+............+...+|++........ .+.+|.. ++|+|++..+++ +|+.||.|++||+++++.
T Consensus 185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV-YSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE-EEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE-EEeCCCeEEEEECcCCcccc
Confidence 33333333333456677788884433222 3556665 899999844444 566799999999999886
Q ss_pred --eeeeccCcCCCCCCcccC--------CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245 185 --CTRLHQNSCGGSPNFSSK--------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (270)
Q Consensus 185 --~~~~~~~~~~~~~~h~~~--------~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 254 (270)
+..+. +|... ....+.+++ |+|+ |+ +|++++. +.|++||+++.++++..+.+|...
T Consensus 264 ~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~-~s~~---g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 264 RHSKLFE--------EPEDPSNRSFFSEIISSISDVK-FSHS---GR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp TTCEEEC--------CC-----CCHHHHHTTCEEEEE-ECTT---SS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGG
T ss_pred ceeeEec--------cCCCccccccccccCceEEEEE-ECCC---CC-EEEEeeC-CeEEEEeCCCCccccceeeccccc
Confidence 66776 44221 012688888 9994 55 8999998 999999999767888899888642
Q ss_pred ---------------eeEEEeecCCCcee
Q 024245 255 ---------------GLECSMWRNPITMS 268 (270)
Q Consensus 255 ---------------v~~~~~s~~g~~ls 268 (270)
+..++|+|+|.+|.
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~ 358 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVM 358 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEE
T ss_pred cccccccccccccccceEEEECCCCCEEE
Confidence 23499999998763
No 74
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=3.1e-29 Score=202.07 Aligned_cols=240 Identities=12% Similarity=0.084 Sum_probs=167.7
Q ss_pred cccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.+..+.+|.+.|++|+|+| ++.+|++|+.||+|++||++++........+.....+.+++|+| ++++|++|+.||.|
T Consensus 156 ~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~dg~i 233 (435)
T 4e54_B 156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA--SSRMVVTGDNVGNV 233 (435)
T ss_dssp EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET--TTTEEEEECSSSBE
T ss_pred eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC--CCCEEEEEeCCCcE
Confidence 4556779999999999998 78899999999999999998765544444444335688999999 99999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeee--ccCCCCC----eEecCCC
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDT--DSLCDSK----DDVPAEG 160 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~s~~~ 160 (270)
++||++... +..+..+...+..+.+..... .......+.+.+||+...+.... ...+|.. ++|+|+|
T Consensus 234 ~~wd~~~~~-----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg 308 (435)
T 4e54_B 234 ILLNMDGKE-----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308 (435)
T ss_dssp EEEESSSCB-----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS
T ss_pred eeeccCcce-----eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC
Confidence 999997543 224445555555444443322 22334456788899987664433 3345655 8899999
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCC--CceeeeeeecCCCCC--------CCceEEEEecCC
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG--RGMCMAVQAYLPSKS--------QGFVNVLAGYED 230 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~p~~~--------~g~~~l~~~~~d 230 (270)
.+++ +++.|+.|+|||+++++....+. +|.... ...+.... |+|.+. ++..+++++..+
T Consensus 309 ~~l~--s~~~D~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 309 ARLL--TTDQKSEIRVYSASQWDCPLGLI--------PHPHRHFQHLTPIKAA-WHPRYNLIVVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp SEEE--EEESSSCEEEEESSSSSSEEEEC--------CCCCCCCSSSCCCBCE-ECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred CeeE--EEcCCCEEEEEECCCCccceEEe--------cccccccccceeEEEE-EcCCCCEEEEEEcCCCCeEEEEecCC
Confidence 8654 56679999999999998877776 343211 11223333 665321 111122222345
Q ss_pred CcEEEEEcCCCCcceeee-eccCCCeeEE-EeecCCCcee
Q 024245 231 GSILVWDIRNPGIPLTAM-KVHLEPGLEC-SMWRNPITMS 268 (270)
Q Consensus 231 g~i~vwd~~~~~~~~~~~-~~~~~~v~~~-~~s~~g~~ls 268 (270)
+.|++||..+ ++.+..+ .+|...|.++ +|+|+|.+|.
T Consensus 378 ~~i~iwd~~~-g~~~~~l~~~~~~~v~s~~~fspdg~~la 416 (435)
T 4e54_B 378 RTIDVFDGNS-GKMMCQLYDPESSGISSLNEFNPMGDTLA 416 (435)
T ss_dssp CCEEEECSSS-CCEEEEECCSSCCCCCCEEEECTTSSCEE
T ss_pred CEEEEEECCC-CcEEEEEeCCCCCcEEEEEEECCCCCEEE
Confidence 6899999999 6766665 4688889987 6999999875
No 75
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=199.73 Aligned_cols=244 Identities=9% Similarity=-0.003 Sum_probs=177.7
Q ss_pred ccccccccEEEEEEeCCCCEE-EEecCCCcEEEEeCC--CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 13 VLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
...+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+..+.....|.+++|+| ++++|++++.|+.|+
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~~g~v~ 174 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--DDTTVIIADKFGDVY 174 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--CCCEEEEEeCCCcEE
Confidence 345688899999999999986 899999999999999 888888887443336799999999 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccC---C-ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE---P-YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP 161 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~ 161 (270)
+|++.++.....+...+..+......+.+... . ........+.+.+|++..++.+...+.+|.. ++|+ ++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY 253 (450)
T ss_dssp EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence 99998876542233344555544444444433 2 2233344567788999988877766777776 8999 887
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCC---CCCCcc----------cCCCceeeeeeecCCCCCCCceEEEEec
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG---GSPNFS----------SKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~h~----------~~~~~~~~~~~~~~p~~~~g~~~l~~~~ 228 (270)
+++ +++.|+.|++||+++++++..+...... ....|. ......+.++. |+|+ ++ +|++++
T Consensus 254 ~l~--s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~---~~-~l~~~~ 326 (450)
T 2vdu_B 254 LLL--SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII-KSKN---LP-FVAFFV 326 (450)
T ss_dssp EEE--EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE-ECSS---SS-EEEEEE
T ss_pred EEE--EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE-EeCC---CC-EEEEEE
Confidence 554 5667999999999999988877621000 000000 01234567777 9984 55 777777
Q ss_pred -CCCcEEEEEc--CCCC---cceeeeeccCCCeeEEEeecCCCcee
Q 024245 229 -EDGSILVWDI--RNPG---IPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 229 -~dg~i~vwd~--~~~~---~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
.|+.|++||+ .. + +.+..+..| ..|.+++|+|++.+++
T Consensus 327 ~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~ 370 (450)
T 2vdu_B 327 EATKCIIILEMSEKQ-KGDLALKQIITFP-YNVISLSAHNDEFQVT 370 (450)
T ss_dssp TTCSEEEEEEECSSS-TTCEEEEEEEECS-SCEEEEEEETTEEEEE
T ss_pred CCCCeEEEEEeccCC-CCceeeccEeccC-CceEEEEecCCcEEEE
Confidence 8999999999 44 4 567778887 8899999999877665
No 76
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.5e-29 Score=198.60 Aligned_cols=225 Identities=14% Similarity=0.111 Sum_probs=159.1
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCc
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGT 87 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~ 87 (270)
+++.++++|...|++++|+|+|++|++|+.++ ++|||+..++.......+ .+..+++.+ +++.+ ++++.|++
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLH--RTNYVAFVTGVKEV 82 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECT--TSSEEEEECSSTTE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcC--CCCEEEEEECCccE
Confidence 45667889999999999999999999998876 889999877666544322 377788887 66766 57788899
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccC-ceeeeccCCCCC-eEecCCCCeEEE
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG-ETVDTDSLCDSK-DDVPAEGPKYMA 165 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~s~~~~~~~~ 165 (270)
|++||+.+++... .+.. ......+ ...+............+|++... +.+.. +..... +++++ ..+++
T Consensus 83 v~iWd~~~~~~~~----~~~~-~~~v~~v--~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 83 VHIWDDVKKQDVS----RIKV-DAPVKDL--FLSREFIVVSYGDVISVFKFGNPWKRITD-DIRFGGVCEFSN--GLLVY 152 (355)
T ss_dssp EEEEETTTTEEEE----EEEC-SSCEEEE--EECSSEEEEEETTEEEEEESSTTCCBSSC-CEEEEEEEEEET--TEEEE
T ss_pred EEEEECCCCcEEE----EEEC-CCceEEE--EEcCCEEEEEEcCEEEEEECCCCceeeEE-eccCCceEEEEc--cEEEE
Confidence 9999999887543 3332 2223323 33444445555667888998877 43332 222222 67777 44544
Q ss_pred EecCCCceEEEEeCCCcc----------------eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245 166 VAGEQLSEVEIWDLNTAE----------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~----------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~ 229 (270)
++|+.||.|++||+++++ .+..+. +| ...+.+++ |+|+ |+ +|++|+.
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~h----~~~v~~~~-~s~~---g~-~l~s~s~ 215 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--------AH----TNPIKMVR-LNRK---SD-MVATCSQ 215 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEET
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--------cc----CCceEEEE-ECCC---CC-EEEEEeC
Confidence 338889999999999765 155666 67 44688888 9995 55 9999999
Q ss_pred CCc-EEEEEcCCCCcceeeee-c-cCCCeeEEEeecCCCcee
Q 024245 230 DGS-ILVWDIRNPGIPLTAMK-V-HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 230 dg~-i~vwd~~~~~~~~~~~~-~-~~~~v~~~~~s~~g~~ls 268 (270)
||+ |++||+++ ++++..+. + |...|++++|+|||.+|.
T Consensus 216 d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~~l~ 256 (355)
T 3vu4_A 216 DGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGSKLA 256 (355)
T ss_dssp TCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSCEEE
T ss_pred CCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCCEEE
Confidence 998 99999999 88888898 5 999999999999998864
No 77
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=5.1e-29 Score=194.21 Aligned_cols=230 Identities=19% Similarity=0.268 Sum_probs=175.1
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.+.+++++|...|++++|+|++++|++|+.|+.|++|+............+. ..+..+.+++ ++++|++++.|+.+
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--KDVLSVAFSS--DNRQIVSGSRDKTI 152 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECT--TSSCEEEEETTSCE
T ss_pred eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCC--CceeEEEEee--cCccceeecCCCeE
Confidence 3567889999999999999999999999999999999999988888777776 5588999999 88999999999999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccc---eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN---AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP 161 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~ 161 (270)
++||+...... ......+........+....... .........+|++...+.+. .+.+|.. ++|+|+++
T Consensus 153 ~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-~~~~h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 153 KLWNTLGVCKY---TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-NHIGHTGYLNTVTVSPDGS 228 (340)
T ss_dssp EEECTTSCEEE---EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSS
T ss_pred EEEEeCCCceE---EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee-EecCCCCcEEEEEECCCCC
Confidence 99998765432 12223333333334443333222 23334567788988876554 4556665 89999998
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
.++ +|+.|+.|++||+++.+.+..+. ++ ..+.++. |+|+ + .+++++.|+.|++||+++
T Consensus 229 ~l~--s~s~Dg~i~iwd~~~~~~~~~~~--------~~-----~~v~~~~-~~~~---~--~~~~~~~d~~i~iwd~~~- 286 (340)
T 4aow_A 229 LCA--SGGKDGQAMLWDLNEGKHLYTLD--------GG-----DIINALC-FSPN---R--YWLCAATGPSIKIWDLEG- 286 (340)
T ss_dssp EEE--EEETTCEEEEEETTTTEEEEEEE--------CS-----SCEEEEE-ECSS---S--SEEEEEETTEEEEEETTT-
T ss_pred EEE--EEeCCCeEEEEEeccCceeeeec--------CC-----ceEEeee-cCCC---C--ceeeccCCCEEEEEECCC-
Confidence 554 56679999999999999988887 33 3567777 9984 3 466777899999999987
Q ss_pred Ccceeee---------eccCCCeeEEEeecCCCcee
Q 024245 242 GIPLTAM---------KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 242 ~~~~~~~---------~~~~~~v~~~~~s~~g~~ls 268 (270)
+..+..+ .+|...|++++|+|||++|-
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp TEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 5544443 46888999999999998763
No 78
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=8.8e-29 Score=198.44 Aligned_cols=231 Identities=16% Similarity=0.239 Sum_probs=173.3
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
....+.+| ..+....|++++++|++|+.||.|++||+.+++....+..|. ..|.+++|+| ++++|++++.|+.|+
T Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~s~d~~i~ 164 (420)
T 3vl1_A 90 GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV--SEITKLKFFP--SGEALISSSQDMQLK 164 (420)
T ss_dssp TTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSS--SCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred eeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccccc--CccEEEEECC--CCCEEEEEeCCCeEE
Confidence 34455555 455566789999999999999999999999998888888888 6699999999 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCC--C---------------
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLC--D--------------- 151 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------------- 151 (270)
+||+++++... .+..+......+.+...... ......+...+|++.+++.+...... +
T Consensus 165 iwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 240 (420)
T 3vl1_A 165 IWSVKDGSNPR----TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240 (420)
T ss_dssp EEETTTCCCCE----EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred EEeCCCCcCce----EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence 99999886543 55666655555555443332 23334566788999887755433210 0
Q ss_pred ------CC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245 152 ------SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 221 (270)
Q Consensus 152 ------~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~ 221 (270)
.. ++|+|+++.++ +++.||.|++||+++++.+..+.. +| ...+.+++ |+|+ ++
T Consensus 241 ~~~~~~~~~v~~~~~s~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~-------~~----~~~v~~~~-~~~~---~~ 303 (420)
T 3vl1_A 241 QLHEISTSKKNNLEFGTYGKYVI--AGHVSGVITVHNVFSKEQTIQLPS-------KF----TCSCNSLT-VDGN---NA 303 (420)
T ss_dssp SCGGGCCCCCCTTCSSCTTEEEE--EEETTSCEEEEETTTCCEEEEECC-------TT----SSCEEEEE-ECSS---CT
T ss_pred eeeecccCcccceEEcCCCCEEE--EEcCCCeEEEEECCCCceeEEccc-------cc----CCCceeEE-EeCC---CC
Confidence 11 77889997554 466799999999999988877763 34 45688888 9995 33
Q ss_pred eEEEEecCCCcEEEEEcCCCCcceeeeec-cCCCeeEEEeecCCCce
Q 024245 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPGLECSMWRNPITM 267 (270)
Q Consensus 222 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l 267 (270)
.+|++|+.||.|++||++++..++..+.. |...|+++.|. ++.+|
T Consensus 304 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 349 (420)
T 3vl1_A 304 NYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALF 349 (420)
T ss_dssp TEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEE
Confidence 38999999999999999985566888887 56778888555 55443
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.7e-29 Score=199.00 Aligned_cols=224 Identities=13% Similarity=0.078 Sum_probs=172.4
Q ss_pred ccccccc--EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEee-cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 14 LRGHRAS--VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 14 ~~~h~~~--v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
..+|... +.+++|++ ..+++++.|+.|++||+.+++....+.. |. ..|.+++|+| ++++|++++.||.|++
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~--~~v~~v~~s~--~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDES--TYVASVKWSH--DGSFLSVGLGNGLVDI 160 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTT--CCEEEEEECT--TSSEEEEEETTSCEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCC--CCEEEEEECC--CCCEEEEECCCCeEEE
Confidence 3467665 44566664 5678888999999999999998887776 44 6799999999 9999999999999999
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEE
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV 166 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~ 166 (270)
||+.+++... .+..+......+.+.. .........+...+|++.........+.+|.. ++|+|++..++
T Consensus 161 wd~~~~~~~~----~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-- 233 (401)
T 4aez_A 161 YDVESQTKLR----TMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA-- 233 (401)
T ss_dssp EETTTCCEEE----EECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE--
T ss_pred EECcCCeEEE----EecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEE--
Confidence 9999886543 5555555555555532 23333444566778999866665666667766 89999997554
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec--CCCcEEEEEcCCCCcc
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIP 244 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~--~dg~i~vwd~~~~~~~ 244 (270)
+++.|+.|++||+++++.+..+. +| ...+.+++ |+|+ +..++++|+ .|+.|++||+++ +++
T Consensus 234 s~~~d~~v~iwd~~~~~~~~~~~--------~~----~~~v~~~~-~~p~---~~~ll~~~~gs~d~~i~i~d~~~-~~~ 296 (401)
T 4aez_A 234 SGGNDNVVQIWDARSSIPKFTKT--------NH----NAAVKAVA-WCPW---QSNLLATGGGTMDKQIHFWNAAT-GAR 296 (401)
T ss_dssp EEETTSCEEEEETTCSSEEEEEC--------CC----SSCCCEEE-ECTT---STTEEEEECCTTTCEEEEEETTT-CCE
T ss_pred EEeCCCeEEEccCCCCCccEEec--------CC----cceEEEEE-ECCC---CCCEEEEecCCCCCEEEEEECCC-CCE
Confidence 56679999999999999888887 55 34677787 9995 322777765 899999999998 788
Q ss_pred eeeeeccCCCeeEEEeecCCCcee
Q 024245 245 LTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 245 ~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+..+. +...|.+++|+|++.+|.
T Consensus 297 ~~~~~-~~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 297 VNTVD-AGSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEE
T ss_pred EEEEe-CCCcEEEEEECCCCCeEE
Confidence 88886 567899999999998763
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=4e-29 Score=196.82 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=139.9
Q ss_pred cccccEEEEEEeCCCCEEE--EecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 16 GHRASVTDVCFHQTKPILF--AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
.+...+.+++|||||++++ +++.|++|+|||+++++++..+. |. ..|.+++|+| +|++|++++.+ .+.+|+.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~--~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~ 204 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TR--GEVKDLHFST--DGKVVAYITGS-SLEVIST 204 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CS--SCCCEEEECT--TSSEEEEECSS-CEEEEET
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CC--CceEEEEEcc--CCceEEeccce-eEEEEEe
Confidence 3456789999999999875 55679999999999999988876 44 5599999999 99999999855 5677777
Q ss_pred cCCccCCCCccceecccceEEEEeec--cCCccceecCCC---CceEEEeccCcee---eeccCCCCC----eEecCCCC
Q 024245 94 ENGGLSSNPSLTIKTNSYHFCKLSLV--KEPYANAKQANE---PKDCYEREVGETV---DTDSLCDSK----DDVPAEGP 161 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~----~~~s~~~~ 161 (270)
.+++... ......+...+..+.+. ..........+. ....|++...... ...+.+|.. ++|+|+|+
T Consensus 205 ~~~~~~~--~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~ 282 (365)
T 4h5i_A 205 VTGSCIA--RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE 282 (365)
T ss_dssp TTCCEEE--EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC
T ss_pred ccCccee--eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC
Confidence 7665432 11222233333333222 222222222222 2344666554432 234455555 89999998
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+++ +|+.|++|+|||+++++++.++.. +|. ..+++++ |+|+ |+ +|++|+.|++|+|||+..
T Consensus 283 ~la--sgs~D~~V~iwd~~~~~~~~~~~~-------gH~----~~V~~v~-fSpd---g~-~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 283 LAV--LASNDNSIALVKLKDLSMSKIFKQ-------AHS----FAITEVT-ISPD---ST-YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEE--EEETTSCEEEEETTTTEEEEEETT-------SSS----SCEEEEE-ECTT---SC-EEEEEETTSEEEEEECCT
T ss_pred ceE--EEcCCCEEEEEECCCCcEEEEecC-------ccc----CCEEEEE-ECCC---CC-EEEEEeCCCeEEEEEcCC
Confidence 543 677899999999999999988643 774 4788998 9995 55 999999999999999975
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=196.25 Aligned_cols=230 Identities=17% Similarity=0.192 Sum_probs=168.0
Q ss_pred cccccEEEEEEeCC---CCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEE------eeCCCCCEEEEEeCC
Q 024245 16 GHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT------GPSIGLNKVISQGRD 85 (270)
Q Consensus 16 ~h~~~v~~~~~s~~---~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~------~~~~~~~~l~s~~~d 85 (270)
+|...|++++|+|+ +.+|++|+.||.|++||+.+++ .+..+.+|. ..|.++.| +| ++++|++++.|
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~--~~~~l~~~~~d 138 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGE--GAPEIVTGSRD 138 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC---CCCEEEEEETT
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecc--cceEEEeeccccccCC--CccEEEEEeCC
Confidence 79999999999998 6999999999999999999887 888888888 66999965 56 88999999999
Q ss_pred CcEEEEEccCCccCCCCccceeccc------ceEEEEeeccCCccce---ecCCCCceEEEeccCceeeeccCCCCC---
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNS------YHFCKLSLVKEPYANA---KQANEPKDCYEREVGETVDTDSLCDSK--- 153 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 153 (270)
+.|++||+++++. +...+..+. .....+.+.+.+.... ....+...+|++...+.... ..|..
T Consensus 139 ~~i~vwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~ 213 (357)
T 3i2n_A 139 GTVKVWDPRQKDD---PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVC 213 (357)
T ss_dssp SCEEEECTTSCSS---CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEE
T ss_pred CeEEEEeCCCCCC---cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceE
Confidence 9999999998762 122332211 1122222223333322 22345677899888776433 22333
Q ss_pred -eEecC---CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245 154 -DDVPA---EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229 (270)
Q Consensus 154 -~~~s~---~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~ 229 (270)
++|+| ++..++ +++.||.|++||+++++....+.... ..+| ...+.+++ |+|+ ++.+|++|+.
T Consensus 214 ~~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~----~~~v~~~~-~~~~---~~~~l~~~~~ 280 (357)
T 3i2n_A 214 SLEFDRKDISMNKLV--ATSLEGKFHVFDMRTQHPTKGFASVS---EKAH----KSTVWQVR-HLPQ---NRELFLTAGG 280 (357)
T ss_dssp EEEESCSSSSCCEEE--EEESTTEEEEEEEEEEETTTEEEEEE---EECC----SSCEEEEE-EETT---EEEEEEEEET
T ss_pred EEEcCCCCCCCCEEE--EECCCCeEEEEeCcCCCcccceeeec---cCCC----cCCEEEEE-ECCC---CCcEEEEEeC
Confidence 89999 787655 45668999999999877665543100 0023 45788888 9994 4447999999
Q ss_pred CCcEEEEEcCCCC------------------cceeeeeccCCCeeEEEeecCCCce
Q 024245 230 DGSILVWDIRNPG------------------IPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 230 dg~i~vwd~~~~~------------------~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
||.|++||++++. +++..+.+|...|++++|+|+|.+|
T Consensus 281 dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 336 (357)
T 3i2n_A 281 AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL 336 (357)
T ss_dssp TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTE
T ss_pred CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeE
Confidence 9999999998632 3567788999999999999999876
No 82
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=207.00 Aligned_cols=227 Identities=13% Similarity=0.041 Sum_probs=164.8
Q ss_pred cccccccccEEEEEEeCC------CCEEEEecCCCcEEEEeCCCCce-----------eEEEeecCCCcceEEEEEeeCC
Q 024245 12 AVLRGHRASVTDVCFHQT------KPILFAGTTGGELRIWDTVQHRT-----------VSSSWVHSAAHGIVSVATGPSI 74 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~------~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~ 74 (270)
.++.+|.+.|++++|+|+ +.+||+|+.||+|+|||+.++.. ...+.+|. ..|.+++|++
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~--~~v~sv~~s~-- 276 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD--SLITTFDFLS-- 276 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT--TCEEEEEESS--
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC--CCEEEEEecC--
Confidence 346778899999999996 57999999999999999986642 23566777 6699999998
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc----cceecCCCCceEEEeccCceeeec---
Q 024245 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY----ANAKQANEPKDCYEREVGETVDTD--- 147 (270)
Q Consensus 75 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--- 147 (270)
+ ..|++|+.||+|++||++++.. +...+..+...+..+...+.+. .......+...+||+++.+.....
T Consensus 277 ~-~~lasgs~DgtV~lWD~~~~~~---~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~ 352 (524)
T 2j04_B 277 P-TTVVCGFKNGFVAEFDLTDPEV---PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR 352 (524)
T ss_dssp S-SEEEEEETTSEEEEEETTBCSS---CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred C-CeEEEEeCCCEEEEEECCCCCC---ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc
Confidence 6 5899999999999999997642 2344566666665553333333 233344566788998876543321
Q ss_pred cCC-CC-CeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245 148 SLC-DS-KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (270)
Q Consensus 148 ~~~-~~-~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (270)
... .. .++|+|+++.++ +++.|++|++||++++.++.++. +| ...+++++ |+|+ |+ +|+
T Consensus 353 ~~~~~v~~v~fsp~~~~l~--s~~~d~tv~lwd~~~~~~~~~l~--------gH----~~~V~sva-~Sp~---g~-~l~ 413 (524)
T 2j04_B 353 FRGSNLVPVVYCPQIYSYI--YSDGASSLRAVPSRAAFAVHPLV--------SR----ETTITAIG-VSRL---HP-MVL 413 (524)
T ss_dssp CSCCSCCCEEEETTTTEEE--EECSSSEEEEEETTCTTCCEEEE--------EC----SSCEEEEE-CCSS---CC-BCE
T ss_pred cccCcccceEeCCCcCeEE--EeCCCCcEEEEECcccccceeee--------cC----CCceEEEE-eCCC---CC-eEE
Confidence 111 11 289999998644 45668999999999999888887 66 44788998 9995 55 899
Q ss_pred EecCCCcEEEEEcCCCCcceeeeec-----cCCCeeEEEeecCCCce
Q 024245 226 AGYEDGSILVWDIRNPGIPLTAMKV-----HLEPGLECSMWRNPITM 267 (270)
Q Consensus 226 ~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~s~~g~~l 267 (270)
+|+.||+|++||+.. + .+..++. +...|++++|+|+|..+
T Consensus 414 Sgs~Dgtv~lwd~~~-~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 414 AGSADGSLIITNAAR-R-LLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp EEETTTEEECCBSCS-S-TTTCC------CCCCEEEECBCCSSSCEE
T ss_pred EEECCCEEEEEechH-h-hccccccCccceeeeEEEEeccCCCCCeE
Confidence 999999999999875 2 3333221 11247799999988643
No 83
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-28 Score=197.98 Aligned_cols=229 Identities=12% Similarity=0.112 Sum_probs=179.2
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcc---------------eEEEEEee
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG---------------IVSVATGP 72 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------------v~~~~~~~ 72 (270)
.+.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+. .. +.+++|+|
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKE--TGGSSINAENHSGDGSLGVDVEWVD 216 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------------CCCBSCCEEEE
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccc--cCccceeeccccCCcceeeEEEEcC
Confidence 35677888999999999999999999999999999999999999988887765 44 89999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCC
Q 024245 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCD 151 (270)
Q Consensus 73 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (270)
+ ..+++++.|+.|++||+++++.. ..+..+......+.+...... ......+...+|++...+.... +.+|
T Consensus 217 --~-~~~~~~~~~g~i~~~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~ 288 (425)
T 1r5m_A 217 --D-DKFVIPGPKGAIFVYQITEKTPT----GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC-FYGH 288 (425)
T ss_dssp --T-TEEEEECGGGCEEEEETTCSSCS----EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE-ECCC
T ss_pred --C-CEEEEEcCCCeEEEEEcCCCcee----eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE-ecCC
Confidence 7 67899999999999999987543 344445444444444433322 2333356677888887665443 3444
Q ss_pred CC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245 152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 152 ~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
.. ++|+|++ . ++ +++.|+.|++||+++++.+..+. .| ...+.+++ |+|+ ++ +|+++
T Consensus 289 ~~~i~~~~~~~~~-~-l~-~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~s~~---~~-~l~~~ 348 (425)
T 1r5m_A 289 SQSIVSASWVGDD-K-VI-SCSMDGSVRLWSLKQNTLLALSI--------VD----GVPIFAGR-ISQD---GQ-KYAVA 348 (425)
T ss_dssp SSCEEEEEEETTT-E-EE-EEETTSEEEEEETTTTEEEEEEE--------CT----TCCEEEEE-ECTT---SS-EEEEE
T ss_pred CccEEEEEECCCC-E-EE-EEeCCCcEEEEECCCCcEeEecc--------cC----CccEEEEE-EcCC---CC-EEEEE
Confidence 44 8999999 3 33 45669999999999999888887 45 34677887 9995 44 99999
Q ss_pred cCCCcEEEEEcCCCCc--------------------ceeeeeccCC--CeeEEEeecCCCce
Q 024245 228 YEDGSILVWDIRNPGI--------------------PLTAMKVHLE--PGLECSMWRNPITM 267 (270)
Q Consensus 228 ~~dg~i~vwd~~~~~~--------------------~~~~~~~~~~--~v~~~~~s~~g~~l 267 (270)
+.||.|++||+++ ++ ++..+.+|.. .|++++|+|++.+|
T Consensus 349 ~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 349 FMDGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp ETTSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred ECCCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence 9999999999998 56 7888999976 99999999999876
No 84
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.5e-28 Score=194.95 Aligned_cols=234 Identities=9% Similarity=0.024 Sum_probs=164.7
Q ss_pred cccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecC-CCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
+.+|...|.+++|+| ++.+|++++.|+.|++||+.+ ..+..+..+. ....|.+++|+| ++++|++++.|+.|++|
T Consensus 114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDSTGRLLLL 190 (383)
T ss_dssp CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET--TTTEEEEEETTSEEEEE
T ss_pred cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC--CCCEEEEECCCCCEEEE
Confidence 347999999999999 789999999999999999985 4555554332 225699999999 99999999999999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEecc----CceeeeccCCCCC----eEecC-CC
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREV----GETVDTDSLCDSK----DDVPA-EG 160 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~s~-~~ 160 (270)
|++ ++ ++..+..+......+.+..... .......+...+|++.. ...+... +|.. ++|+| ++
T Consensus 191 d~~-~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 191 GLD-GH----EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDS 263 (383)
T ss_dssp ETT-SC----EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTS
T ss_pred ECC-CC----EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCC
Confidence 994 32 2345555655555555544433 23334456678899987 3333322 3544 89999 88
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCC------CceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~------~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~ 234 (270)
..++ +++.|+.|++||+++++....+..... ....|.... ...+..+. |+| +++ + +|+.||.|+
T Consensus 264 ~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~-~s~---dg~-~--s~s~d~~i~ 333 (383)
T 3ei3_B 264 TKLL--TTDQRNEIRVYSSYDWSKPDQIIIHPH-RQFQHLTPIKATWHPMYDLIVAG-RYP---DDQ-L--LLNDKRTID 333 (383)
T ss_dssp CEEE--EEESSSEEEEEETTBTTSCSEEEECCB-CCCTTSCCCCCEECSSSSEEEEE-CBC---CTT-T--CTTCCCCEE
T ss_pred CEEE--EEcCCCcEEEEECCCCccccccccccc-cccccccceEEeccCCCCceEEE-ecC---Ccc-c--ccCCCCeEE
Confidence 7654 456699999999999888777762100 000111111 11223344 665 344 3 788999999
Q ss_pred EEEcCCCCcceeeeec--cCCCeeEEEeecCCCcee
Q 024245 235 VWDIRNPGIPLTAMKV--HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~ls 268 (270)
+||+.+ ++++..+.+ |...+..++|+|+|.+|.
T Consensus 334 iwd~~~-~~~~~~l~~~~~~~~~~~~~~s~~g~~l~ 368 (383)
T 3ei3_B 334 IYDANS-GGLVHQLRDPNAAGIISLNKFSPTGDVLA 368 (383)
T ss_dssp EEETTT-CCEEEEECBTTBCSCCCEEEECTTSSEEE
T ss_pred EEecCC-CceeeeecCCCCCceEEEEEEecCccEEE
Confidence 999999 888888887 456778889999999874
No 85
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.8e-28 Score=191.29 Aligned_cols=227 Identities=12% Similarity=0.125 Sum_probs=167.9
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc---eeEEEeecCCCcceEEEEEeeCCCCC-EEEEEeCCC
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG 86 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~ 86 (270)
+....+|.+.|++++|+|++++|++++.|+.|++||+.+++ ....+..|. ..|.+++|+| +++ +|++++.||
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~l~~~~~dg 79 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--HPLLCCNFID--NTDLQIYVGTVQG 79 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS--SCEEEEEEEE--SSSEEEEEEETTS
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC--CceEEEEECC--CCCcEEEEEcCCC
Confidence 34456899999999999999999999999999999998876 344555777 6699999999 989 999999999
Q ss_pred cEEEEEc-cCCccCCCCccceec--ccceEEEEeeccCCccceecCCCCceEEEecc---------CceeeeccCCCCC-
Q 024245 87 TVKCWDI-ENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREV---------GETVDTDSLCDSK- 153 (270)
Q Consensus 87 ~i~~wd~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~- 153 (270)
.|++||+ .+++. ..+.. +......+.+............+...+|++.. .+.+. .+. +..
T Consensus 80 ~i~~wd~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~-~~~~ 152 (342)
T 1yfq_A 80 EILKVDLIGSPSF-----QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-NTK-VKNK 152 (342)
T ss_dssp CEEEECSSSSSSE-----EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS-SSS-SCCC
T ss_pred eEEEEEeccCCce-----EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeee-EEe-eCCc
Confidence 9999999 87653 23334 44444444444322233344456677788876 44333 222 333
Q ss_pred ---eEecCCCCeEEEEecCCCceEEEEeCCC-ccee-eeeccCcCCCCCCcccCCCceeeeeeecCC-CCCCCceEEEEe
Q 024245 154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAG 227 (270)
Q Consensus 154 ---~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p-~~~~g~~~l~~~ 227 (270)
++|+|++ ++ +++.|+.|++||+++ +... ..... .| ...+.+++ |+| ++. +|+++
T Consensus 153 v~~~~~~~~~--l~--~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~----~~~i~~i~-~~~~~~~----~l~~~ 212 (342)
T 1yfq_A 153 IFTMDTNSSR--LI--VGMNNSQVQWFRLPLCEDDNGTIEES-------GL----KYQIRDVA-LLPKEQE----GYACS 212 (342)
T ss_dssp EEEEEECSSE--EE--EEESTTEEEEEESSCCTTCCCEEEEC-------SC----SSCEEEEE-ECSGGGC----EEEEE
T ss_pred eEEEEecCCc--EE--EEeCCCeEEEEECCccccccceeeec-------CC----CCceeEEE-ECCCCCC----EEEEE
Confidence 7888877 33 456689999999997 5532 22221 22 34677887 998 643 99999
Q ss_pred cCCCcEEEEEcCCC-----CcceeeeeccCC---------CeeEEEeecCCCcee
Q 024245 228 YEDGSILVWDIRNP-----GIPLTAMKVHLE---------PGLECSMWRNPITMS 268 (270)
Q Consensus 228 ~~dg~i~vwd~~~~-----~~~~~~~~~~~~---------~v~~~~~s~~g~~ls 268 (270)
+.||.|++||++.. .++...+..|.. .|++++|+|++.+|.
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 267 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY 267 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE
Confidence 99999999999984 378888888865 999999999998764
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=2.7e-28 Score=192.45 Aligned_cols=209 Identities=13% Similarity=0.036 Sum_probs=152.2
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
++..+.+|...|++++|+|++++|++++.||.|++||+++++....+....+...|.+++|+| ++++|++++.|+.|+
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVIS 121 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEE
Confidence 678889999999999999999999999999999999999887665553322226799999999 999999999999999
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEecc-----------------CceeeeccCCC
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREV-----------------GETVDTDSLCD 151 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 151 (270)
+||++.+............+......+.+...... ......+...+|++.. .......+.+|
T Consensus 122 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred EEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 99999875211000111222333444444333322 2233356677888641 12233344456
Q ss_pred CC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245 152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 152 ~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
.. ++|+|+++.++ +++.|+.|++||+++++++..+. +| ...+.+++ |+|+ ++ +|++|
T Consensus 202 ~~~v~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~ 262 (372)
T 1k8k_C 202 CGWVHGVCFSANGSRVA--WVSHDSTVCLADADKKMAVATLA--------SE----TLPLLAVT-FITE---SS-LVAAG 262 (372)
T ss_dssp SSCEEEEEECSSSSEEE--EEETTTEEEEEEGGGTTEEEEEE--------CS----SCCEEEEE-EEET---TE-EEEEE
T ss_pred CCeEEEEEECCCCCEEE--EEeCCCEEEEEECCCCceeEEEc--------cC----CCCeEEEE-EecC---CC-EEEEE
Confidence 55 89999998554 45679999999999999999888 55 33577887 9984 54 77777
Q ss_pred cCCCcEEEEEcCC
Q 024245 228 YEDGSILVWDIRN 240 (270)
Q Consensus 228 ~~dg~i~vwd~~~ 240 (270)
.|+.|++||+++
T Consensus 263 -~d~~i~i~~~~~ 274 (372)
T 1k8k_C 263 -HDCFPVLFTYDS 274 (372)
T ss_dssp -TTSSCEEEEEET
T ss_pred -eCCeEEEEEccC
Confidence 899999999986
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.3e-28 Score=193.62 Aligned_cols=225 Identities=12% Similarity=0.144 Sum_probs=165.7
Q ss_pred ccccEEEEEEeCC----CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 17 h~~~v~~~~~s~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
|...|++++|+|+ +.+|++|+.||.|++||+.+++.+..+.+|. ..|.+++|+|. ++++|++++.||.|++||
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG--NAINELKFHPR-DPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCC--SCEEEEEECSS-CTTEEEEEETTSCEEEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCC--CcEEEEEECCC-CCCEEEEEeCCCeEEEEE
Confidence 5578999999998 6799999999999999999999999999888 66999999984 468999999999999999
Q ss_pred ccCCccCCCCccce---ecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeee----------------------
Q 024245 93 IENGGLSSNPSLTI---KTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDT---------------------- 146 (270)
Q Consensus 93 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------------- 146 (270)
+++++... .+ ..+......+.+....... .....+...+|++...+....
T Consensus 145 ~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 145 IQTDTLVA----IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp TTTTEEEE----EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred eecCeEEE----EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 99886533 33 3444444444444333222 233456778898876543221
Q ss_pred -----ccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcce--------------eeeeccCcCCCCCCcccCC
Q 024245 147 -----DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--------------CTRLHQNSCGGSPNFSSKG 203 (270)
Q Consensus 147 -----~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~h~~~~ 203 (270)
...+|.. ++|+ ++.+ + +++.|+.|++||+++++. +..+. +|
T Consensus 221 ~~~~~~~~~~~~~v~~~~~~--~~~l-~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---- 284 (366)
T 3k26_A 221 FPDFSTRDIHRNYVDCVRWL--GDLI-L-SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--------YS---- 284 (366)
T ss_dssp CCSEEECSSCSSCCCEEEEE--TTEE-E-EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--------CS----
T ss_pred cCccccccCCcceEEEEEEc--CCEE-E-EEecCCEEEEEeCCCccccccccccCCcchheecccc--------cc----
Confidence 1122444 6776 5543 3 566799999999987754 44444 44
Q ss_pred CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc----eeeeecc--CCCeeEEEeecCCCcee
Q 024245 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP----LTAMKVH--LEPGLECSMWRNPITMS 268 (270)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~--~~~v~~~~~s~~g~~ls 268 (270)
...+.+++ |+|+. +++ +|++|+.||.|++||+++ +++ ...+.+| ...|++++|+|++.+|.
T Consensus 285 ~~~v~~~~-~s~~~-~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 351 (366)
T 3k26_A 285 QCDIWYMR-FSMDF-WQK-MLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI 351 (366)
T ss_dssp SCCSSCCC-CEECT-TSS-EEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred CCcEEEEE-EcCCC-CCc-EEEEEecCCcEEEEECCC-CCCccccceEEcccccCCceEEEEeCCCCCeEE
Confidence 33567777 99851 155 999999999999999998 543 3467777 78999999999998764
No 88
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-28 Score=185.47 Aligned_cols=224 Identities=16% Similarity=0.222 Sum_probs=169.7
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC---ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
+....+..|...|.+++|+|++++|++|+.||.|++|++... +.+..+..|. ..|.+++|.+ ++|++++.|
T Consensus 50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~----~~l~~~~~d 123 (313)
T 3odt_A 50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ--GNVCSLSFQD----GVVISGSWD 123 (313)
T ss_dssp EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS--SCEEEEEEET----TEEEEEETT
T ss_pred EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc--cCEEEEEecC----CEEEEEeCC
Confidence 456778889999999999999999999999999999998764 5566777787 6699999944 799999999
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeecc--CCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~ 159 (270)
+.|++|| .++. ...+..+......+.... ..........+...+|+. .+........|.. ++|+|+
T Consensus 124 ~~i~~~d--~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~ 195 (313)
T 3odt_A 124 KTAKVWK--EGSL----VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDD 195 (313)
T ss_dssp SEEEEEE--TTEE----EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEET
T ss_pred CCEEEEc--CCcE----EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCC
Confidence 9999999 3322 234444444443333332 223333444566777872 2222222222444 899999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
+. + + +++.|+.|++||+++++.+..+. +| ...+.+++ |+|+ + .|++++.||.|++||++
T Consensus 196 ~~-~-~-~~~~dg~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~--~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 196 GH-F-I-SCSNDGLIKLVDMHTGDVLRTYE--------GH----ESFVYCIK-LLPN---G--DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp TE-E-E-EEETTSEEEEEETTTCCEEEEEE--------CC----SSCEEEEE-ECTT---S--CEEEEETTSEEEEECTT
T ss_pred Ce-E-E-EccCCCeEEEEECCchhhhhhhh--------cC----CceEEEEE-EecC---C--CEEEEecCCEEEEEECC
Confidence 97 3 3 46679999999999999999888 56 34678888 9984 4 48899999999999999
Q ss_pred CCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
+ ++++..+..|...|++++|+|++.+++
T Consensus 255 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~~ 282 (313)
T 3odt_A 255 N-GSLKQVITLPAISIWSVDCMSNGDIIV 282 (313)
T ss_dssp T-CCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred C-CceeEEEeccCceEEEEEEccCCCEEE
Confidence 9 889999999999999999999998765
No 89
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.8e-28 Score=191.32 Aligned_cols=228 Identities=11% Similarity=0.078 Sum_probs=172.2
Q ss_pred ccccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeC-CCCceeEEEee--cCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 11 VAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDT-VQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~-~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
...+.+|...|++++|+|+++ +|++|+.||.|++||+ .+++. ..+.. |. ..|.+++|+| + ++|++++.|+
T Consensus 49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~--~~v~~l~~~~--~-~~l~s~~~d~ 122 (342)
T 1yfq_A 49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEAN--LGICRICKYG--D-DKLIAASWDG 122 (342)
T ss_dssp EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCC--SCEEEEEEET--T-TEEEEEETTS
T ss_pred ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCC--CceEEEEeCC--C-CEEEEEcCCC
Confidence 455668999999999999999 9999999999999999 77655 56667 77 6699999998 4 8999999999
Q ss_pred cEEEEEccC---------CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEecc-Ccee-eeccCCCCC--
Q 024245 87 TVKCWDIEN---------GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETV-DTDSLCDSK-- 153 (270)
Q Consensus 87 ~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-- 153 (270)
.|++||+++ ++... .+. +......+.+.... .......+...+|++.. .... ......+..
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~----~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i 196 (342)
T 1yfq_A 123 LIEVIDPRNYGDGVIAVKNLNSN----NTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI 196 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESCSS----SSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE
T ss_pred eEEEEcccccccccccccCCeee----EEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCce
Confidence 999999987 54433 232 33333344443333 33334455677899887 4432 222233333
Q ss_pred --eEecC-CCCeEEEEecCCCceEEEEeCCCc------ceeeeeccCcCCCCCCcccC-----CCceeeeeeecCCCCCC
Q 024245 154 --DDVPA-EGPKYMAVAGEQLSEVEIWDLNTA------ERCTRLHQNSCGGSPNFSSK-----GRGMCMAVQAYLPSKSQ 219 (270)
Q Consensus 154 --~~~s~-~~~~~~~~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~h~~~-----~~~~~~~~~~~~p~~~~ 219 (270)
++|+| ++..++ +++.||.|++||++.. +....+. +|... ....+.+++ |+|+
T Consensus 197 ~~i~~~~~~~~~l~--~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~-~s~~--- 262 (342)
T 1yfq_A 197 RDVALLPKEQEGYA--CSSIDGRVAVEFFDDQGDDYNSSKRFAFR--------CHRLNLKDTNLAYPVNSIE-FSPR--- 262 (342)
T ss_dssp EEEEECSGGGCEEE--EEETTSEEEEEECCTTCCSTTCTTCEEEE--------CCCCCTTCCSSCCCEEEEE-ECTT---
T ss_pred eEEEECCCCCCEEE--EEecCCcEEEEEEcCCCcccccccceeee--------cccccccccccceeEEEEE-EcCC---
Confidence 89999 987554 4556999999999887 6777777 45331 133788888 9995
Q ss_pred CceEEEEecCCCcEEEEEcCCCCcceeeeecc-CCCeeEEEeecCCCcee
Q 024245 220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEPGLECSMWRNPITMS 268 (270)
Q Consensus 220 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ls 268 (270)
++ +|++|+.||.|++||+.+ ++++..+.+| ...|++++ |+|.+|.
T Consensus 263 ~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~--~~~~~l~ 308 (342)
T 1yfq_A 263 HK-FLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSVVKIA--CSDNILC 308 (342)
T ss_dssp TC-CEEEEETTSCEEEEETTT-TEEEEECCCCSSSEEEEEE--ECSSEEE
T ss_pred CC-EEEEecCCceEEEEcCcc-HhHhhhhhcccCCCceEec--CCCCeEE
Confidence 44 899999999999999998 8889999998 99999999 9888763
No 90
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.1e-28 Score=194.00 Aligned_cols=237 Identities=11% Similarity=0.105 Sum_probs=172.1
Q ss_pred ccccccccEEEEEEeCC----CCEEEEecCCCcEEEEeCCCCceeEEEeecC---CCcceEEEEEeeCCC----CCEEEE
Q 024245 13 VLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHS---AAHGIVSVATGPSIG----LNKVIS 81 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~----~~~l~s 81 (270)
...+|.+.|++++|+|+ ...+++++.++.|++||+.+++.+..+..+. +...|.+++|+| + +.+|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--DSNTSHPLLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--CTTTCCEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--CCCCCCCEEEE
Confidence 34589999999999984 4466666667799999999888777776433 226699999999 7 679999
Q ss_pred EeCCCcEEEEEccCCccCCCCccceecccceEEEEeecc-CCc-cceecCCCCceEEEeccCceeeec--cCCCCC----
Q 024245 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPY-ANAKQANEPKDCYEREVGETVDTD--SLCDSK---- 153 (270)
Q Consensus 82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---- 153 (270)
++.||.|++||+.+++... .+..+......+.+.. ... .......+...+|++..++.+... +.+|..
T Consensus 91 ~~~dg~i~v~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 166 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIK----HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166 (366)
T ss_dssp EETTCEEEEECTTTCCEEE----EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred ecCCCEEEEEEchhceEee----eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence 9999999999999886533 5555655555555544 222 233344667888999888766543 245655
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc--------------------CCCCCCcccCCCceeeeeeec
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--------------------CGGSPNFSSKGRGMCMAVQAY 213 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~h~~~~~~~~~~~~~~ 213 (270)
++|+|++..++ +++.|+.|++||+++++....+.... .....+| ...+.++. |
T Consensus 167 ~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~-~ 239 (366)
T 3k26_A 167 ADYDLLGEKIM--SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH----RNYVDCVR-W 239 (366)
T ss_dssp EEECTTSSEEE--EEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC----SSCCCEEE-E
T ss_pred EEECCCCCEEE--EecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC----cceEEEEE-E
Confidence 89999998655 45669999999999887654443100 0000013 34677777 8
Q ss_pred CCCCCCCceEEEEecCCCcEEEEEcCCCC-------------cceeeeeccCCCeeEEEeecC--CCcee
Q 024245 214 LPSKSQGFVNVLAGYEDGSILVWDIRNPG-------------IPLTAMKVHLEPGLECSMWRN--PITMS 268 (270)
Q Consensus 214 ~p~~~~g~~~l~~~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~v~~~~~s~~--g~~ls 268 (270)
++ . +|++++.||.|++||+++.. ..+..+..|...|++++|+|+ +.+|.
T Consensus 240 ~~-----~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 240 LG-----D-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp ET-----T-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred cC-----C-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 73 2 99999999999999998732 237778889999999999999 88764
No 91
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=8.2e-28 Score=187.58 Aligned_cols=217 Identities=15% Similarity=0.178 Sum_probs=151.2
Q ss_pred CcccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCC---------ceeEEEeecCCCcceEEEEEeeCCC--
Q 024245 9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH---------RTVSSSWVHSAAHGIVSVATGPSIG-- 75 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~-- 75 (270)
+++..+.+|...|++++|+| ++.+|++|+.||.|++||+.++ +.+..+..|. ..|.+++|+| +
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~ 123 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK--GSLYSVKFAP--AHL 123 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS--SCEEEEEECC--GGG
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC--CceeEEEEcC--CCC
Confidence 46777889999999999999 6999999999999999999876 5567777777 6699999999 7
Q ss_pred CCEEEEEeCCCcEEEEEccCCccCCCCccc---------eecccceEEEEeeccC---CccceecC-CCCceEEEeccCc
Q 024245 76 LNKVISQGRDGTVKCWDIENGGLSSNPSLT---------IKTNSYHFCKLSLVKE---PYANAKQA-NEPKDCYEREVGE 142 (270)
Q Consensus 76 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~ 142 (270)
+++|++++.|+.|++||+++++........ ...+......+..... ........ .+....++....+
T Consensus 124 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 203 (351)
T 3f3f_A 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK 203 (351)
T ss_dssp CSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC
T ss_pred CcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc
Confidence 899999999999999999988754411100 0011222222333221 11122222 2222223333333
Q ss_pred e-eeeccCCCCC----eEecCCCC---eEEEEecCCCceEEEEeCCCc--------------------------------
Q 024245 143 T-VDTDSLCDSK----DDVPAEGP---KYMAVAGEQLSEVEIWDLNTA-------------------------------- 182 (270)
Q Consensus 143 ~-~~~~~~~~~~----~~~s~~~~---~~~~~~~~~d~~i~iwd~~~~-------------------------------- 182 (270)
. ....+.+|.. ++|+|++. .+++ +++.||.|++||++.+
T Consensus 204 ~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (351)
T 3f3f_A 204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIA-TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS 282 (351)
T ss_dssp EEEEEECCCCCSCEEEEEECCCSSCSSEEEE-EEETTSCEEEEEEEECC-------------------------------
T ss_pred eeeeeecCCCCcceeEEEECCCCCCcceEEE-EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence 2 2445666766 89999983 3444 5677999999999865
Q ss_pred --------------ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 183 --------------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 183 --------------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
+.+..+. +| ...+.+++ |+|+ ++ +|++|+.||.|++||+.+ ++.+..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~s~~---~~-~l~s~~~dg~v~iw~~~~-~~~~~~~ 344 (351)
T 3f3f_A 283 NTEEKAELQSNLQVELLSEHD--------DH----NGEVWSVS-WNLT---GT-ILSSAGDDGKVRLWKATY-SNEFKCM 344 (351)
T ss_dssp --------CCSEEEEEEEEEC--------TT----SSCEEEEE-ECSS---SC-CEEEEETTSCEEEEEECT-TSCEEEE
T ss_pred ccceeeeecccccccEEEEEe--------cc----cccEEEEE-EcCC---CC-EEEEecCCCcEEEEecCc-Ccchhhe
Confidence 3444444 45 34688888 9995 44 999999999999999998 5444433
No 92
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=8.1e-28 Score=190.51 Aligned_cols=211 Identities=16% Similarity=0.243 Sum_probs=156.8
Q ss_pred CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEE-----eecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSS-----WVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
...+.+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+ .+|. ..|.+++|++. ++++|++|
T Consensus 148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~-~~~~l~sg 224 (380)
T 3iz6_a 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT--ADVLSLSINSL-NANMFISG 224 (380)
T ss_dssp TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC--SCEEEEEECSS-SCCEEEEE
T ss_pred cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc--cCeEEEEeecC-CCCEEEEE
Confidence 355678999999999999996 457999999999999999999988877 4566 66999999764 56899999
Q ss_pred eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCC------CC---
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLC------DS--- 152 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 152 (270)
+.|++|++||++... .++..+.++......+.+...... ......+...+||+..++.+...... +.
T Consensus 225 s~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v 301 (380)
T 3iz6_a 225 SCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301 (380)
T ss_dssp ETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred ECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCce
Confidence 999999999998442 223455555555444444433222 23334566788999888765432211 11
Q ss_pred C-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245 153 K-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (270)
Q Consensus 153 ~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg 231 (270)
. ++|+|+|+.++ +|+.||.|++||+.+++.+..+... ..+| ...+.+++ |+|+ |. +|++|+.||
T Consensus 302 ~~~~~s~~g~~l~--~g~~dg~i~vwd~~~~~~~~~~~~~----~~~h----~~~v~~l~-~s~d---g~-~l~sgs~D~ 366 (380)
T 3iz6_a 302 TSVAFSISGRLLF--AGYSNGDCYVWDTLLAEMVLNLGTL----QNSH----EGRISCLG-LSSD---GS-ALCTGSWDK 366 (380)
T ss_dssp SEEEECSSSSEEE--EECTTSCEEEEETTTCCEEEEECCS----CSSC----CCCCCEEE-ECSS---SS-EEEEECTTS
T ss_pred EEEEECCCCCEEE--EEECCCCEEEEECCCCceEEEEecc----cCCC----CCceEEEE-ECCC---CC-EEEEeeCCC
Confidence 1 89999998655 5777999999999999888777410 0044 45688888 9995 55 999999999
Q ss_pred cEEEEEcCC
Q 024245 232 SILVWDIRN 240 (270)
Q Consensus 232 ~i~vwd~~~ 240 (270)
+|++|++..
T Consensus 367 ~i~iW~~~~ 375 (380)
T 3iz6_a 367 NLKIWAFSG 375 (380)
T ss_dssp CEEEEECCS
T ss_pred CEEEEecCC
Confidence 999999986
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=2.8e-28 Score=188.44 Aligned_cols=210 Identities=16% Similarity=0.140 Sum_probs=146.9
Q ss_pred cccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 10 PVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
++..+++|.+.|++++|++ ++.+|++|+.|++|++||+++++ ....+.+|. ..|.+++|+|..++.+|++++.|
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~--~~V~~v~~~p~~~g~~lasgs~D 126 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD--SSVNSVCWAPHDYGLILACGSSD 126 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS--SCCCEEEECCTTTCSCEEEECSS
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC--CceEEEEECCCCCCcEEEEEcCC
Confidence 5678899999999999986 48899999999999999998874 556677777 66999999992227899999999
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccC------------------CccceecCCCCceEEEeccCc--eee
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE------------------PYANAKQANEPKDCYEREVGE--TVD 145 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--~~~ 145 (270)
++|++||++++.... ....+..+......+.+... .........+.+.+|++.... ...
T Consensus 127 ~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 205 (316)
T 3bg1_A 127 GAISLLTYTGEGQWE-VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE 205 (316)
T ss_dssp SCEEEEEECSSSCEE-ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE
T ss_pred CCEEEEecCCCCCcc-eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee
Confidence 999999998753110 01111222222221221111 111222234567789986543 344
Q ss_pred eccCCCCC----eEecCCC---CeEEEEecCCCceEEEEeCCCcc----eeeeeccCcCCCCCCcccCCCceeeeeeecC
Q 024245 146 TDSLCDSK----DDVPAEG---PKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL 214 (270)
Q Consensus 146 ~~~~~~~~----~~~s~~~---~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 214 (270)
..+.+|.. ++|+|++ ..+++ +++.|++|+|||+++.. ....+. +| ...+++++ |+
T Consensus 206 ~~l~~h~~~V~~v~~sp~~~~~~~~la-s~s~D~~v~iw~~~~~~~~~~~~~~~~--------~~----~~~v~~v~-~s 271 (316)
T 3bg1_A 206 QKLEAHSDWVRDVAWAPSIGLPTSTIA-SCSQDGRVFIWTCDDASSNTWSPKLLH--------KF----NDVVWHVS-WS 271 (316)
T ss_dssp ECCBCCSSCEEEEECCCCSSCSCCEEE-EEETTCEEEEEECSSTTCCCCBCCEEE--------EC----SSCEEEEE-EC
T ss_pred eecccCCCceEEEEecCCCCCCCceEE-EEcCCCeEEEEEccCccccchhhhhhh--------cC----CCcEEEEE-Ec
Confidence 56778877 8999987 23444 67789999999998632 122233 34 45788898 99
Q ss_pred CCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 215 PSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 215 p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
|+ ++ +|++++.||.|++|+...
T Consensus 272 p~---g~-~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 272 IT---AN-ILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp TT---TC-CEEEEESSSCEEEEEECT
T ss_pred CC---CC-EEEEEcCCCeEEEEEECC
Confidence 95 44 899999999999999875
No 94
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=1.5e-27 Score=192.80 Aligned_cols=227 Identities=18% Similarity=0.284 Sum_probs=147.9
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
+++..+.+|...|.+++|+ +..+++|+.||.|++||+.+++.+..+.+|. ..|.+++| +++++++++.|+.|
T Consensus 190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~----~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHV--AAVRCVQY----DGRRVVSGAYDFMV 261 (445)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCS--SCEEEEEE----CSSCEEEEETTSCE
T ss_pred cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCc--ccEEEEEE----CCCEEEEEcCCCEE
Confidence 3444555566666666554 3355666666666666666555555555555 44666655 22556666666666
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEE
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV 166 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~ 166 (270)
++||+++++... .+..+......+.+. ..........+...+|++.+++.+. .+.+|.. .++.+++..++
T Consensus 262 ~iwd~~~~~~~~----~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~l~-- 333 (445)
T 2ovr_B 262 KVWDPETETCLH----TLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIH-TLTGHQSLTSGMELKDNILV-- 333 (445)
T ss_dssp EEEEGGGTEEEE----EECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTCCEEE-EECCCCSCEEEEEEETTEEE--
T ss_pred EEEECCCCcEeE----EecCCCCceEEEEEC-CCEEEEEeCCCeEEEEECCCCCEEE-EEcCCcccEEEEEEeCCEEE--
Confidence 666666554322 333343344444441 1222233345667789988877654 3455655 56666776544
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
+++.||.|++||+++++.+..+. ++. .....+.++. |++. +|++|+.||.|++||+++ ++.+.
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~--------~~~-~~~~~v~~~~-~~~~------~l~s~~~dg~v~iwd~~~-~~~~~ 396 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQ--------GPN-KHQSAVTCLQ-FNKN------FVITSSDDGTVKLWDLKT-GEFIR 396 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC--------STT-SCSSCEEEEE-ECSS------EEEEEETTSEEEEEETTT-CCEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEc--------cCC-CCCCCEEEEE-ECCC------EEEEEeCCCeEEEEECCC-Cceee
Confidence 56679999999999999998887 321 1245677887 8653 999999999999999999 78777
Q ss_pred ee-----eccCCCeeEEEeecCCCcee
Q 024245 247 AM-----KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 247 ~~-----~~~~~~v~~~~~s~~g~~ls 268 (270)
.+ .+|.+.|++++|+|++.+|.
T Consensus 397 ~~~~~~~~~~~~~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 397 NLVTLESGGSGGVVWRIRASNTKLVCA 423 (445)
T ss_dssp EEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred eeeccccCCCCceEEEEEecCCEEEEE
Confidence 77 46788999999999998764
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=8.4e-28 Score=193.77 Aligned_cols=225 Identities=13% Similarity=0.281 Sum_probs=171.7
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+++..+.+|.+.|++++| ++.+|++|+.||.|++||+.+++.+..+..|. ..|.+++|++ +.+++++.||.
T Consensus 163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~----~~l~s~s~dg~ 234 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC--EAVLHLRFNN----GMMVTCSKDRS 234 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC--SCEEEEECCT----TEEEEEETTSC
T ss_pred CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC--CcEEEEEEcC----CEEEEeeCCCc
Confidence 3567888999999999999 78899999999999999999999999999888 6699999976 69999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEE
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA 165 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~ 165 (270)
|++||++++.... ....+..+......+.... .........+...+|++.+++.+.. +.+|.. .++..++..++
T Consensus 235 i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~l~- 310 (435)
T 1p22_A 235 IAVWDMASPTDIT-LRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVRT-LNGHKRGIACLQYRDRLVV- 310 (435)
T ss_dssp EEEEECSSSSCCE-EEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEETTEEE-
T ss_pred EEEEeCCCCCCce-eeeEecCCCCcEEEEEeCC-CEEEEEeCCCeEEEEECCcCcEEEE-EcCCCCcEEEEEeCCCEEE-
Confidence 9999998875431 0123344555555555522 2223334456678899988776553 445555 34444565443
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc--
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-- 243 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~-- 243 (270)
+|+.||.|++||+++++++..+. +|. ..+.++. |.+ . +|++|+.||.|++||+++ +.
T Consensus 311 -~g~~dg~i~iwd~~~~~~~~~~~--------~h~----~~v~~~~-~~~-----~-~l~sg~~dg~i~vwd~~~-~~~~ 369 (435)
T 1p22_A 311 -SGSSDNTIRLWDIECGACLRVLE--------GHE----ELVRCIR-FDN-----K-RIVSGAYDGKIKVWDLVA-ALDP 369 (435)
T ss_dssp -EEETTSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-CCS-----S-EEEEEETTSCEEEEEHHH-HTST
T ss_pred -EEeCCCeEEEEECCCCCEEEEEe--------CCc----CcEEEEE-ecC-----C-EEEEEeCCCcEEEEECCC-CCCc
Confidence 56679999999999999999998 663 4577777 743 3 899999999999999976 33
Q ss_pred -------ceeeeeccCCCeeEEEeecCCCce
Q 024245 244 -------PLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 244 -------~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
++..+.+|...|++++| ++.+|
T Consensus 370 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l 398 (435)
T 1p22_A 370 RAPAGTLCLRTLVEHSGRVFRLQF--DEFQI 398 (435)
T ss_dssp TSCTTTTEEEEECCCSSCCCCEEE--CSSCE
T ss_pred cccccchheeeccCCCCCeEEEEe--CCCEE
Confidence 68888999999999999 44443
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=3.3e-27 Score=190.33 Aligned_cols=220 Identities=15% Similarity=0.233 Sum_probs=171.1
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
+....+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+|. ..|.+++|. +++|++|+.||+|++
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~----~~~l~sg~~dg~i~v 197 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT--GSVLCLQYD----ERVIITGSSDSTVRV 197 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS--SCEEEEECC----SSEEEEEETTSCEEE
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC--CcEEEEEEC----CCEEEEEcCCCeEEE
Confidence 3344567788999887 78899999999999999999999999999988 669999983 489999999999999
Q ss_pred EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceee--eccCCCCC--eEecCCCCeEEEE
Q 024245 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD--TDSLCDSK--DDVPAEGPKYMAV 166 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~s~~~~~~~~~ 166 (270)
||+.+++... .+..+......+.... .........+...+|++....... ..+.+|.. .++..+++.++
T Consensus 198 wd~~~~~~~~----~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-- 270 (435)
T 1p22_A 198 WDVNTGEMLN----TLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV-- 270 (435)
T ss_dssp EESSSCCEEE----EECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE--
T ss_pred EECCCCcEEE----EEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE--
Confidence 9999986543 5555555555555542 233334456677889998776543 45667766 44445776554
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
+|+.||.|++||+++++.+..+. +|. ..+.++. |++ . ++++|+.||.|++||+++ ++++.
T Consensus 271 s~~~dg~i~vwd~~~~~~~~~~~--------~~~----~~v~~~~-~~~-----~-~l~~g~~dg~i~iwd~~~-~~~~~ 330 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCEFVRTLN--------GHK----RGIACLQ-YRD-----R-LVVSGSSDNTIRLWDIEC-GACLR 330 (435)
T ss_dssp EEETTSEEEEEETTTCCEEEEEE--------CCS----SCEEEEE-EET-----T-EEEEEETTSCEEEEETTT-CCEEE
T ss_pred EEeCCCeEEEEECCcCcEEEEEc--------CCC----CcEEEEE-eCC-----C-EEEEEeCCCeEEEEECCC-CCEEE
Confidence 46679999999999999999988 663 3566676 743 2 999999999999999999 88999
Q ss_pred eeeccCCCeeEEEeecCCCce
Q 024245 247 AMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s~~g~~l 267 (270)
.+.+|...|.+++| ++.+|
T Consensus 331 ~~~~h~~~v~~~~~--~~~~l 349 (435)
T 1p22_A 331 VLEGHEELVRCIRF--DNKRI 349 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEE
T ss_pred EEeCCcCcEEEEEe--cCCEE
Confidence 99999999999999 44443
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=3.2e-28 Score=196.63 Aligned_cols=237 Identities=10% Similarity=0.108 Sum_probs=166.4
Q ss_pred Cccccccccc------------ccEEEEEEeCCC--CEEEEecCCCcEEEEeCCCCcee---------------------
Q 024245 9 DPVAVLRGHR------------ASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRTV--------------------- 53 (270)
Q Consensus 9 ~~~~~~~~h~------------~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~~~~~--------------------- 53 (270)
+++..+++|. +.|++++|+|++ .+|++++.|+.|++||+.+++..
T Consensus 72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 151 (447)
T 3dw8_B 72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT 151 (447)
T ss_dssp EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence 3577889998 889999999998 79999999999999999764432
Q ss_pred ------------------EE-EeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc-cCC---CCccceeccc
Q 024245 54 ------------------SS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG-LSS---NPSLTIKTNS 110 (270)
Q Consensus 54 ------------------~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~---~~~~~~~~~~ 110 (270)
.. ..+|. ..|.+++|+| ++++|+++ .|+.|++||+++.. ... .....+..+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 226 (447)
T 3dw8_B 152 LRVPVFRPMDLMVEASPRRIFANAHT--YHINSISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT 226 (447)
T ss_dssp CCCCEEEEEEEEEEEEEEEEECSCCS--SCCCEEEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC
T ss_pred eEeccccchheeeeccceEEeccCCC--cceEEEEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccC
Confidence 12 24566 6699999999 99999998 79999999998432 211 0000233444
Q ss_pred ceEEEEeeccCC--ccceecCCCCceEEEeccCcee---eeccCCCC-------------C---eEecCCCCeEEEEecC
Q 024245 111 YHFCKLSLVKEP--YANAKQANEPKDCYEREVGETV---DTDSLCDS-------------K---DDVPAEGPKYMAVAGE 169 (270)
Q Consensus 111 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------~---~~~s~~~~~~~~~~~~ 169 (270)
.....+.+.... ........+.+.+|++..++.. ...+.+|. . ++|+|++++++ +++
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~--~~~ 304 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM--TRD 304 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEE--EEE
T ss_pred cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEE--Eee
Confidence 444444444332 2334445667888999887641 23344442 3 89999998655 455
Q ss_pred CCceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCc-----------eeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 170 QLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRG-----------MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 170 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~-----------~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
. +.|++||+++ ++++..+. +|...... .+..++ |+|+ ++ +|++|+.||.|++||
T Consensus 305 ~-~~v~iwd~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~i~~~~~~~-~s~~---~~-~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 305 Y-LSVKVWDLNMENRPVETYQ--------VHEYLRSKLCSLYENDCIFDKFECC-WNGS---DS-VVMTGSYNNFFRMFD 370 (447)
T ss_dssp S-SEEEEEETTCCSSCSCCEE--------SCGGGTTTHHHHHHTSGGGCCCCEE-ECTT---SS-EEEEECSTTEEEEEE
T ss_pred C-CeEEEEeCCCCccccceee--------ccccccccccccccccccccceEEE-ECCC---CC-EEEEeccCCEEEEEE
Confidence 5 9999999997 88888887 56431110 123366 9995 44 899999999999999
Q ss_pred cCCCCcceeeee---------------------------------ccCCCeeEEEeecCCCcee
Q 024245 238 IRNPGIPLTAMK---------------------------------VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 238 ~~~~~~~~~~~~---------------------------------~~~~~v~~~~~s~~g~~ls 268 (270)
+.+ ++.+ .+. .+...|..++|+|++.+|.
T Consensus 371 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la 432 (447)
T 3dw8_B 371 RNT-KRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIA 432 (447)
T ss_dssp TTT-CCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEE
T ss_pred cCC-Ccce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEE
Confidence 998 5443 222 2345788999999998874
No 98
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=1.5e-28 Score=193.63 Aligned_cols=227 Identities=10% Similarity=0.003 Sum_probs=154.3
Q ss_pred ccccccccEEEEEEeCCCCEEEE-----------ecCCCcEEEEeCCCCcee-EEE---e---ecCCCcceEEEEEeeCC
Q 024245 13 VLRGHRASVTDVCFHQTKPILFA-----------GTTGGELRIWDTVQHRTV-SSS---W---VHSAAHGIVSVATGPSI 74 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s-----------~~~dg~i~vwd~~~~~~~-~~~---~---~~~~~~~v~~~~~~~~~ 74 (270)
.|.+|...|.++++++ ..+++ ++.|+.+++|++...... ... . ....+..+.+++|+|
T Consensus 68 ~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-- 143 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-- 143 (365)
T ss_dssp ECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT--
T ss_pred EccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC--
Confidence 4677888998888764 45554 456888999998765322 111 1 122225588999999
Q ss_pred CCCEEEEE--eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceee-eccCCC
Q 024245 75 GLNKVISQ--GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-TDSLCD 151 (270)
Q Consensus 75 ~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 151 (270)
||++++++ +.|++|++||+++++... .+. +......+.+................+|+..+++.+. ....+|
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~----~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKF----EIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDK 218 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEE----EEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCT
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEE----EeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCC
Confidence 99987654 478999999999886543 333 2222322333222222333334455567766666544 345556
Q ss_pred CC----eEecCCCCeEEEEecCCCc----eEEEEeCCCcce----eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245 152 SK----DDVPAEGPKYMAVAGEQLS----EVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219 (270)
Q Consensus 152 ~~----~~~s~~~~~~~~~~~~~d~----~i~iwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~ 219 (270)
.. ++|+|++..++.++ .|+ .+++||+..... ...+. +| ...+.+++ |+|+
T Consensus 219 ~~~v~~v~fspdg~~l~~~s--~d~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~----~~~V~~~~-~Spd--- 280 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAAS--LKKGKGIVLTKISIKSGNTSVLRSKQVT--------NR----FKGITSMD-VDMK--- 280 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEE--ESSSCCEEEEEEEEETTEEEEEEEEEEE--------SS----CSCEEEEE-ECTT---
T ss_pred CCCEEEEEEcCCCCEEEEEe--cCCcceeEEeecccccceecceeeeeec--------CC----CCCeEeEE-ECCC---
Confidence 55 89999998766433 344 688899876553 22333 34 34688888 9995
Q ss_pred CceEEEEecCCCcEEEEEcCCCCcceeee-eccCCCeeEEEeecCCCcee
Q 024245 220 GFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 220 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~ls 268 (270)
|+ +||+|+.|++|+|||+++ ++++..+ .+|..+|++++|||||++|.
T Consensus 281 g~-~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 281 GE-LAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp SC-EEEEEETTSCEEEEETTT-TEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred CC-ceEEEcCCCEEEEEECCC-CcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 55 999999999999999999 7888774 78999999999999999874
No 99
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-27 Score=187.56 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=156.6
Q ss_pred CcccccccccccEEEEEEeCC--CCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCC--CCEEEEE
Q 024245 9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIG--LNKVISQ 82 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~ 82 (270)
+++..+.+|...|++++|+++ +.+|++|+.||.|++||+.+++ .+..+..|. ..|.+++|+| + +++|+++
T Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~~l~~~ 121 (379)
T 3jrp_A 46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAP--HEYGPLLLVA 121 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECC--GGGCSEEEEE
T ss_pred eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC--cceEEEEeCC--CCCCCEEEEe
Confidence 567788999999999999986 8999999999999999999887 666676777 6699999999 7 8999999
Q ss_pred eCCCcEEEEEccCCccCCCCccceecccceEEEEeecc--------------CCccceecCCCCceEEEeccCce---ee
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--------------EPYANAKQANEPKDCYEREVGET---VD 145 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~---~~ 145 (270)
+.|+.|++||++++.... ...+..+......+.+.. ..........+...+|++..... ..
T Consensus 122 ~~d~~i~v~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 199 (379)
T 3jrp_A 122 SSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 199 (379)
T ss_dssp ETTSEEEEEECCTTSCCC--EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred cCCCcEEEEecCCCCcee--eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE
Confidence 999999999999875432 334445555555555444 12233344456778899886642 33
Q ss_pred eccCCCCC----eEecCCC--CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245 146 TDSLCDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219 (270)
Q Consensus 146 ~~~~~~~~----~~~s~~~--~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~ 219 (270)
..+.+|.. ++|+|++ ..+++ +++.||.|++||+++++....... .........+.+++ |+|+
T Consensus 200 ~~~~~h~~~v~~~~~sp~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~~~-~s~~--- 267 (379)
T 3jrp_A 200 STLEGHSDWVRDVAWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTL-------LKEEKFPDVLWRAS-WSLS--- 267 (379)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEE-------SSSSCCSSCEEEEE-ECSS---
T ss_pred EEEecccCcEeEEEECCCCCCCCeEE-EEeCCCEEEEEeCCCCCccceeee-------eccccCCCcEEEEE-EcCC---
Confidence 45666766 8999993 34444 566799999999998752211110 00011245688888 9995
Q ss_pred CceEEEEecCCCcEEEEEcCC
Q 024245 220 GFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 220 g~~~l~~~~~dg~i~vwd~~~ 240 (270)
++ +|++++.||.|++||+..
T Consensus 268 g~-~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 268 GN-VLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SC-CEEEEESSSSEEEEEEEE
T ss_pred CC-EEEEecCCCcEEEEeCCC
Confidence 55 899999999999999874
No 100
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=3.1e-27 Score=198.07 Aligned_cols=230 Identities=13% Similarity=0.053 Sum_probs=171.9
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcc-eEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHG-IVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
.|.+.|++++|+|++++|++++ ++.|++||+.++ +....+.+|. .. |.+++|+|..++++|++++.||.|++
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCC--CceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 5889999999999999999998 789999999988 8888998887 88 99999998545689999999999999
Q ss_pred EEccCC------ccCCCCccceecccceEEEEeeccCCccceecCCCC---ceEEEeccCceeeeccCCCCC----eEec
Q 024245 91 WDIENG------GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCDSK----DDVP 157 (270)
Q Consensus 91 wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~s 157 (270)
||+.++ .. .....+..+......+.+.............. ..++....++ ....+.+|.. ++|+
T Consensus 93 w~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 93 WGWTFDKESNSVEV--NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLK 169 (615)
T ss_dssp EEEEEEGGGTEEEE--EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEEC
T ss_pred EeCCCCcccccccc--cccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC-cceeeecCCccEEEEEEC
Confidence 999755 11 11224444444444444433332222222211 2333333333 3445566666 8999
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd 237 (270)
|+++.+++ +++.|+.|++||+.+++.+..+. +|.. ....+.+++ |+|+ +++ +|++++.||.|++||
T Consensus 170 ~~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~--------~~~~-~~~~v~~~~-~~~~--~~~-~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 170 QSRPMRSM-TVGDDGSVVFYQGPPFKFSASDR--------THHK-QGSFVRDVE-FSPD--SGE-FVITVGSDRKISCFD 235 (615)
T ss_dssp SSSSCEEE-EEETTTEEEEEETTTBEEEEEEC--------SSSC-TTCCEEEEE-ECST--TCC-EEEEEETTCCEEEEE
T ss_pred CCCCcEEE-EEeCCCcEEEEeCCCcceeeeec--------ccCC-CCceEEEEE-ECCC--CCC-EEEEEeCCCeEEEEE
Confidence 99986665 56679999999999999999888 5632 111678888 9995 155 999999999999999
Q ss_pred cCCCCcceeee-e---ccCCCeeEEEeecCCCce
Q 024245 238 IRNPGIPLTAM-K---VHLEPGLECSMWRNPITM 267 (270)
Q Consensus 238 ~~~~~~~~~~~-~---~~~~~v~~~~~s~~g~~l 267 (270)
+++ ++++..+ . .|...|.+++|+ ++.+|
T Consensus 236 ~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 267 (615)
T 1pgu_A 236 GKS-GEFLKYIEDDQEPVQGGIFALSWL-DSQKF 267 (615)
T ss_dssp TTT-CCEEEECCBTTBCCCSCEEEEEES-SSSEE
T ss_pred CCC-CCEeEEecccccccCCceEEEEEc-CCCEE
Confidence 998 7888888 6 899999999999 88765
No 101
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.5e-27 Score=204.92 Aligned_cols=230 Identities=13% Similarity=0.075 Sum_probs=162.8
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
..||.+.|++++|+|++++||+|+.||.|+||+..+.+....+. |. .+|.+++|+| + ++|++++.|++|++||+
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~--~~V~~l~fsp--g-~~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DR--SAIKEMRFVK--G-IYLVVINAKDTVYVLSL 86 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SC--CCEEEEEEET--T-TEEEEEETTCEEEEEET
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CC--CCEEEEEEcC--C-CEEEEEECcCeEEEEEC
Confidence 45899999999999999999999999999999998777665543 44 6799999999 5 69999999999999999
Q ss_pred cCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceee----------eccCCCCC----eEecC
Q 024245 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVD----------TDSLCDSK----DDVPA 158 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~----~~~s~ 158 (270)
++++... .+. +......+.+...... ......+.+.+|++...+... ..+.+|.. ++|+|
T Consensus 87 ~~~~~~~----~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 87 YSQKVLT----TVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp TTCSEEE----EEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred CCCcEEE----EEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 9886543 332 2223333333322222 222345667889998776431 23355655 89999
Q ss_pred CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCc------ccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF------SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h------~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~ 232 (270)
++...++ +|+.|+.| +||+++++++..+.........+. .......+.+++ |+|+ |+ +|++|+.||.
T Consensus 162 ~~~~~l~-~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~-fspd---g~-~lasgs~Dg~ 234 (902)
T 2oaj_A 162 RDIGTVL-ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL-YHPN---SL-HIITIHEDNS 234 (902)
T ss_dssp TEEEEEE-EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE-ECTT---SS-EEEEEETTCC
T ss_pred CCCCEEE-EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE-EcCC---CC-EEEEEECCCe
Confidence 8655555 56779999 999999998888872100000000 001135688898 9995 55 9999999999
Q ss_pred EEEEEcCCCCcceee--e---ec-------------cCCCeeEEEeec
Q 024245 233 ILVWDIRNPGIPLTA--M---KV-------------HLEPGLECSMWR 262 (270)
Q Consensus 233 i~vwd~~~~~~~~~~--~---~~-------------~~~~v~~~~~s~ 262 (270)
|++||+++ ++++.. + .. |..+|++++|++
T Consensus 235 i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 235 LVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp EEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred EEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 99999998 666543 2 12 345799999964
No 102
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=8.8e-27 Score=186.99 Aligned_cols=233 Identities=14% Similarity=0.173 Sum_probs=167.8
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
.++++.+.+|...|.+++++ +.+|++|+.|+.+++||.... ..+..+.+|. ..+..+.|+| +++++++++.|+
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~--~~~~~~~~~~--~g~~l~s~~~D~ 252 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS--QEVCGLRWAP--DGRHLASGGNDN 252 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCS--SCEEEEEECT--TSSEEEEEETTS
T ss_pred CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccc--cceeeeeecC--CCCeeeeeeccc
Confidence 35778899999999998885 569999999999999998764 5667788888 5699999999 999999999999
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ec---CCCCceEEEeccCceeeeccCCCCC--eEecCCC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQ---ANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG 160 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~ 160 (270)
.+++|+..+++.....+.....+......+.......... .. ..+.+.+|++.+++........... +.|++++
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~ 332 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY 332 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTT
T ss_pred cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCC
Confidence 9999999988755444445555555555444443332222 22 2345678999888766654333322 8899999
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
..+++++|..|+.|+|||+++++++.++. +|. ..|++++ |+|+ |+ +|++|+.||+|+|||+..
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--------gH~----~~V~~l~-~spd---g~-~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPTMAKVAELK--------GHT----SRVLSLT-MSPD---GA-TVASAAADETLRLWRCFE 395 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-ECTT---SS-CEEEEETTTEEEEECCSC
T ss_pred CeEEEEEecCCCEEEEEECCCCcEEEEEc--------CCC----CCEEEEE-EcCC---CC-EEEEEecCCeEEEEECCC
Confidence 99988788889999999999999999998 784 4688888 9995 55 999999999999999987
Q ss_pred CCcceeeeeccCCCeeEEEeecCC
Q 024245 241 PGIPLTAMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~s~~g 264 (270)
..+....+.+...+....|..+|
T Consensus 396 -~~~~~~~~~~~~~~~~~s~~~~g 418 (420)
T 4gga_A 396 -LDPARRREREKASAAKSSLIHQG 418 (420)
T ss_dssp -SSCC-------------------
T ss_pred -CCccchhhhccCCccccccCCCC
Confidence 56666666666555555554444
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-26 Score=187.13 Aligned_cols=231 Identities=11% Similarity=0.054 Sum_probs=162.9
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCC---CCceeEEEeec--------C--CCcceEEEEEeeCCCCCEEEEE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTV---QHRTVSSSWVH--------S--AAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~--------~--~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
+|...|++++|+|++.+|++|+.||.|++||++ +++....+..+ . ....+.++.+....++++|+++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 599999999999999999999999999999995 55544433322 1 2255777774422278999999
Q ss_pred eCCCcEEEEEccCCccCCCCccceec--ccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eE
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DD 155 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 155 (270)
+.|+.|++||+++++... .+.. +......+.+...... ......+...+|+++.++.+......|.. ++
T Consensus 189 ~~d~~i~iwd~~~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 264 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQ----IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVE 264 (437)
T ss_dssp ETTSEEEEEETTTCCEEE----EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEE
T ss_pred eCCCeEEEEeCCCCeeeE----EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEE
Confidence 999999999999886543 4444 4444444444433322 22334566788999987776654434443 64
Q ss_pred ec----CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC----------------------CCceeee
Q 024245 156 VP----AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK----------------------GRGMCMA 209 (270)
Q Consensus 156 ~s----~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~----------------------~~~~~~~ 209 (270)
|+ +++. ++ ++++.|+.|++||+++++++..+. +|... ....+.+
T Consensus 265 ~~~~~s~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 265 VCQFYGKNSV-IV-VGGSSKTFLTIWNFVKGHCQYAFI--------NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp ECTTTCTTEE-EE-EEESTTEEEEEEETTTTEEEEEEE--------SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred eccccCCCcc-EE-EEEcCCCcEEEEEcCCCcEEEEEE--------cCCCCCccceecccccccccceecccccCCceEE
Confidence 44 4554 33 367789999999999999888887 33211 2334666
Q ss_pred eeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec-------------------------------------cC
Q 024245 210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-------------------------------------HL 252 (270)
Q Consensus 210 ~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------------------------------~~ 252 (270)
++ |++ ++ +|++|+.||.|++||+.+ +++...+.+ |.
T Consensus 335 l~-~~~----~~-~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (437)
T 3gre_A 335 IS-VSN----DK-ILLTDEATSSIVMFSLNE-LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH 407 (437)
T ss_dssp EE-EET----TE-EEEEEGGGTEEEEEETTC-GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred EE-ECC----ce-EEEecCCCCeEEEEECCC-cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence 66 772 34 999999999999999998 777766665 78
Q ss_pred CCeeEEEeecC--CCce
Q 024245 253 EPGLECSMWRN--PITM 267 (270)
Q Consensus 253 ~~v~~~~~s~~--g~~l 267 (270)
..|++++|+++ +.+|
T Consensus 408 ~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 408 DIINSISTCEVDETPLL 424 (437)
T ss_dssp CCEEEEEEEESSSSEEE
T ss_pred cceeeEeeeccCCceEE
Confidence 89999999998 5443
No 104
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.1e-28 Score=191.95 Aligned_cols=205 Identities=13% Similarity=0.018 Sum_probs=141.9
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc---eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
+++..+.+|...|++++|+|++++|++++.|+.|++||+.+++ ....+..|. ..|.+++|+| ++++|++++.|
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d 121 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN--RAATFVRWSP--NEDKFAVGSGA 121 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCS--SCEEEEECCT--TSSCCEEEESS
T ss_pred EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC--CceEEEEECC--CCCEEEEEecC
Confidence 5778899999999999999999999999999999999999876 566666777 6699999999 99999999999
Q ss_pred CcEEEEEccCCccCCCCccceec-ccceEEEEeeccCCcc-ceecCCCCceEEEeccC-----------------ceeee
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVG-----------------ETVDT 146 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~ 146 (270)
+.|++||+++++... ....+.. +......+.+...... ......+...+|++... .....
T Consensus 122 ~~i~iwd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (377)
T 3dwl_C 122 RVISVCYFEQENDWW-VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA 200 (377)
T ss_dssp SCEEECCC-----CC-CCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred CeEEEEEECCcccce-eeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh
Confidence 999999999875311 1223443 4444444444433222 22333456778988522 12222
Q ss_pred ccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcce----eeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245 147 DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218 (270)
Q Consensus 147 ~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~ 218 (270)
.+ +|.. ++|+|++++++ +++.|+.|++||+++++. +..+. +| ...+.+++ |+|+
T Consensus 201 ~~-~~~~~v~~~~~sp~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~s~~-- 262 (377)
T 3dwl_C 201 EY-PSGGWVHAVGFSPSGNALA--YAGHDSSVTIAYPSAPEQPPRALITVK--------LS----QLPLRSLL-WANE-- 262 (377)
T ss_dssp CC-CCSSSEEEEEECTTSSCEE--EEETTTEEC-CEECSTTSCEEECCCEE--------CS----SSCEEEEE-EEET--
T ss_pred cc-cCCceEEEEEECCCCCEEE--EEeCCCcEEEEECCCCCCcceeeEeec--------CC----CCceEEEE-EcCC--
Confidence 33 6655 89999998655 466799999999999887 66666 55 34678887 9984
Q ss_pred CCceEEEEecCCCcEEEEEcC
Q 024245 219 QGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 219 ~g~~~l~~~~~dg~i~vwd~~ 239 (270)
++ +|++|+.|+.+ +|+..
T Consensus 263 -~~-~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 263 -SA-IVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp -TE-EEEEESSSSEE-EECCC
T ss_pred -CC-EEEEEcCCcEE-EEEeC
Confidence 55 88888766666 66654
No 105
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.3e-27 Score=181.48 Aligned_cols=195 Identities=7% Similarity=0.072 Sum_probs=130.2
Q ss_pred cccEEEEEEeCC----CCEEEEecC--------------------CCcEEEEeC-CCCceeEEEeecCCCcceEEEEEee
Q 024245 18 RASVTDVCFHQT----KPILFAGTT--------------------GGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGP 72 (270)
Q Consensus 18 ~~~v~~~~~s~~----~~~l~s~~~--------------------dg~i~vwd~-~~~~~~~~~~~~~~~~~v~~~~~~~ 72 (270)
...|+.++|+|+ ++++++++. |+.|++|++ ++++.+..+.+|... +..++|++
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~--v~~l~fs~ 188 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE--ETILTFAE 188 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS--SCEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc--eeeEEeec
Confidence 346777777888 667776553 888999998 457888888888844 77777777
Q ss_pred -CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCC
Q 024245 73 -SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD 151 (270)
Q Consensus 73 -~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (270)
..++.+|++++.|++|++||++++++.. ++..+........
T Consensus 189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~----tL~g~~~~v~~v~---------------------------------- 230 (356)
T 2w18_A 189 VQGMQEALLGTTIMNNIVIWNLKTGQLLK----KMHIDDSYQASVC---------------------------------- 230 (356)
T ss_dssp EETSTTEEEEEETTSEEEEEETTTCCEEE----EEECCC---CCCE----------------------------------
T ss_pred cCCCCceEEEecCCCcEEEEECCCCcEEE----EEcCCCcceeeeE----------------------------------
Confidence 3356899999999999999999997644 4433211100000
Q ss_pred CCeEecCCCCeEE----------EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245 152 SKDDVPAEGPKYM----------AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 221 (270)
Q Consensus 152 ~~~~~s~~~~~~~----------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~ 221 (270)
.++|+|+|..++ +++|+.|++|++||..+++.+..+... ...+|.. ...+.. ++ +.
T Consensus 231 -~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~---~p~Gh~~----~~lsg~-~s-----g~ 296 (356)
T 2w18_A 231 -HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC---LPPGQAG----RFLEGD-VK-----DH 296 (356)
T ss_dssp -EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC---CCTTCCC----CEEEEE-EE-----TT
T ss_pred -EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee---ccCCCcc----eeEccc-cC-----CC
Confidence 034667665443 357889999999999999887665210 0014532 122322 32 33
Q ss_pred eEEEEecCCCcEEEEEcCCCCcceeeeeccCCCee-EEEeecCCCcee
Q 024245 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGL-ECSMWRNPITMS 268 (270)
Q Consensus 222 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~ls 268 (270)
++++|+.|++|+|||+.+ ++++.++.+|...+. .++|||||++|-
T Consensus 297 -~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 297 -CAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp -EEEEEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred -EEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999999999999 899999999987766 589999999873
No 106
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=8.4e-28 Score=216.23 Aligned_cols=222 Identities=15% Similarity=0.279 Sum_probs=178.6
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
+...|.+++|+|+++++++|+.||.|++||+.+++....+.+|. ..|.+++|+| ++++|++++.||.|++||+.++
T Consensus 960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~--~~v~~l~~s~--dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK--KAVRHIQFTA--DGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS--SCCCCEEECS--SSSCEEEECSSSBEEEEETTTT
T ss_pred ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC--CceEEEEECC--CCCEEEEEcCCCEEEEEECCCC
Confidence 45679999999999999999999999999999999998888888 6699999999 9999999999999999999988
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCc
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS 172 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~ 172 (270)
+... ...+......+.+............+...+|++.+++... .+.+|.. ++|+|+++.++ +++.|+
T Consensus 1036 ~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~--s~s~d~ 1107 (1249)
T 3sfz_A 1036 DYVF-----LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIER-DFTCHQGTVLSCAISSDATKFS--STSADK 1107 (1249)
T ss_dssp EEEC-----CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCE-EEECCSSCCCCEEECSSSSSCE--EECCSS
T ss_pred ceEE-----EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeE-EEcccCCcEEEEEECCCCCEEE--EEcCCC
Confidence 6542 2234444444444444444455556677889998877554 3444544 89999998665 566799
Q ss_pred eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee----
Q 024245 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM---- 248 (270)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~---- 248 (270)
+|++||+.+++++..+. +| ...+.+++ |+|+ |+ +|++|+.||.|++||+.+ ++++..+
T Consensus 1108 ~v~iwd~~~~~~~~~l~--------~h----~~~v~~~~-~s~d---g~-~lat~~~dg~i~vwd~~~-~~~~~~~~~~~ 1169 (1249)
T 3sfz_A 1108 TAKIWSFDLLSPLHELK--------GH----NGCVRCSA-FSLD---GI-LLATGDDNGEIRIWNVSD-GQLLHSCAPIS 1169 (1249)
T ss_dssp CCCEECSSSSSCSBCCC--------CC----SSCEEEEE-ECSS---SS-EEEEEETTSCCCEEESSS-SCCCCCCCCCC
T ss_pred cEEEEECCCcceeeeec--------cC----CCcEEEEE-ECCC---CC-EEEEEeCCCEEEEEECCC-CceEEEecccc
Confidence 99999999999888887 66 34678888 9995 55 999999999999999998 6666554
Q ss_pred -----eccCCCeeEEEeecCCCcee
Q 024245 249 -----KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 249 -----~~~~~~v~~~~~s~~g~~ls 268 (270)
.+|...|++++|+|||.+|.
T Consensus 1170 ~~~~~~~~~~~v~~l~fs~dg~~l~ 1194 (1249)
T 3sfz_A 1170 VEEGTATHGGWVTDVCFSPDSKTLV 1194 (1249)
T ss_dssp -------CCSCCCEEEECTTSSCEE
T ss_pred ccccccccCceEEEEEECCCCCEEE
Confidence 67889999999999998874
No 107
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=3.5e-26 Score=184.79 Aligned_cols=219 Identities=16% Similarity=0.294 Sum_probs=172.4
Q ss_pred CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+++..+.+|...|++++|+ +.++++|+.||.|++||+.+++.+..+.+|. ..|.++.|++ +.+++++.||.
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~----~~l~s~s~dg~ 220 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHT--STVRCMHLHE----KRVVSGSRDAT 220 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEET----TEEEEEETTSE
T ss_pred CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCC--CcEEEEEecC----CEEEEEeCCCE
Confidence 36778899999999999998 5699999999999999999999999999888 6699999966 68999999999
Q ss_pred EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEE
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA 165 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~ 165 (270)
|++||+++++... .+..+......+... ..........+...+|++..++.+. .+.+|.. .++..++..++
T Consensus 221 i~~wd~~~~~~~~----~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~l~- 293 (445)
T 2ovr_B 221 LRVWDIETGQCLH----VLMGHVAAVRCVQYD-GRRVVSGAYDFMVKVWDPETETCLH-TLQGHTNRVYSLQFDGIHVV- 293 (445)
T ss_dssp EEEEESSSCCEEE----EEECCSSCEEEEEEC-SSCEEEEETTSCEEEEEGGGTEEEE-EECCCSSCEEEEEECSSEEE-
T ss_pred EEEEECCCCcEEE----EEcCCcccEEEEEEC-CCEEEEEcCCCEEEEEECCCCcEeE-EecCCCCceEEEEECCCEEE-
Confidence 9999999886533 555565555555552 2233344456677889998876655 4456655 34444776554
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
+++.|+.|++||+++++.+..+. +|. ..+.++. +++ . +|++|+.||.|++||+++ ++++
T Consensus 294 -~~~~d~~i~i~d~~~~~~~~~~~--------~~~----~~v~~~~-~~~-----~-~l~~~~~dg~i~vwd~~~-~~~~ 352 (445)
T 2ovr_B 294 -SGSLDTSIRVWDVETGNCIHTLT--------GHQ----SLTSGME-LKD-----N-ILVSGNADSTVKIWDIKT-GQCL 352 (445)
T ss_dssp -EEETTSCEEEEETTTCCEEEEEC--------CCC----SCEEEEE-EET-----T-EEEEEETTSCEEEEETTT-CCEE
T ss_pred -EEeCCCeEEEEECCCCCEEEEEc--------CCc----ccEEEEE-EeC-----C-EEEEEeCCCeEEEEECCC-CcEE
Confidence 56679999999999999999888 563 3455555 543 3 999999999999999998 8888
Q ss_pred eeeec---cCCCeeEEEeec
Q 024245 246 TAMKV---HLEPGLECSMWR 262 (270)
Q Consensus 246 ~~~~~---~~~~v~~~~~s~ 262 (270)
..+.+ |...|++++|++
T Consensus 353 ~~~~~~~~~~~~v~~~~~~~ 372 (445)
T 2ovr_B 353 QTLQGPNKHQSAVTCLQFNK 372 (445)
T ss_dssp EEECSTTSCSSCEEEEEECS
T ss_pred EEEccCCCCCCCEEEEEECC
Confidence 88886 888999999964
No 108
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=1e-26 Score=194.83 Aligned_cols=230 Identities=15% Similarity=0.179 Sum_probs=169.7
Q ss_pred Cccccccccccc-EEEEEEeC--CCCEEEEecCCCcEEEEeCCCC--------ceeEEEeecCC----------------
Q 024245 9 DPVAVLRGHRAS-VTDVCFHQ--TKPILFAGTTGGELRIWDTVQH--------RTVSSSWVHSA---------------- 61 (270)
Q Consensus 9 ~~~~~~~~h~~~-v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~~~~~~---------------- 61 (270)
+++..+.+|... |++++|+| ++++|++|+.||.|++||+.++ +....+..|..
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 788899999999 99999999 9999999999999999999643 44444443331
Q ss_pred --------------------------CcceEEEEEeeCCCCC-EEEEEeCCCcEEEEEccCCccCCCCccceecccc---
Q 024245 62 --------------------------AHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY--- 111 (270)
Q Consensus 62 --------------------------~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~--- 111 (270)
...|.+++|+| ++. .+++++.|+.|++||+.+++... .+..+..
T Consensus 134 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~----~~~~~~~~~~ 207 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSA----SDRTHHKQGS 207 (615)
T ss_dssp EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEE----EECSSSCTTC
T ss_pred eccCCCCccEEEEEECCCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceee----eecccCCCCc
Confidence 13355555555 444 67788888999999988776533 4444444
Q ss_pred eEEEEeeccC-Cc-cceecCCCCceEEEeccCceeeeccC---CCCC----eEecCCCCeEEEEecCCCceEEEEeCCCc
Q 024245 112 HFCKLSLVKE-PY-ANAKQANEPKDCYEREVGETVDTDSL---CDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182 (270)
Q Consensus 112 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~ 182 (270)
....+.+... .. .......+...+|++.+++.+..... +|.. ++|+ ++..++ +++.|+.|++||++++
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~--~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA--TVGADATIRVWDVTTS 284 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEE--EEETTSEEEEEETTTT
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEE--EEcCCCcEEEEECCCC
Confidence 4444444433 22 22334466788899988887765534 5655 8899 887554 4556899999999999
Q ss_pred ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~ 262 (270)
+.+..+. .+.......+.++. |. ++. ++++++.||.|++||+.+ ++++..+.+|...|++++| |
T Consensus 285 ~~~~~~~--------~~~~~~~~~~~~~~-~~----~~~-~l~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~v~~~~~-~ 348 (615)
T 1pgu_A 285 KCVQKWT--------LDKQQLGNQQVGVV-AT----GNG-RIISLSLDGTLNFYELGH-DEVLKTISGHNKGITALTV-N 348 (615)
T ss_dssp EEEEEEE--------CCTTCGGGCEEEEE-EE----ETT-EEEEEETTSCEEEEETTE-EEEEEEECCCSSCEEEEET-T
T ss_pred cEEEEEc--------CCCCcccCceeEEE-eC----CCC-eEEEEECCCCEEEEECCC-CcEEEEEeCCCCCEEEEEe-c
Confidence 9988887 44333345666666 64 344 899999999999999998 8889999999999999999 7
Q ss_pred C
Q 024245 263 N 263 (270)
Q Consensus 263 ~ 263 (270)
+
T Consensus 349 ~ 349 (615)
T 1pgu_A 349 P 349 (615)
T ss_dssp T
T ss_pred C
Confidence 7
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=5.6e-26 Score=181.31 Aligned_cols=228 Identities=14% Similarity=0.164 Sum_probs=167.8
Q ss_pred cEEEEEEeCCCC-EEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 20 SVTDVCFHQTKP-ILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 20 ~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
....++++|+.. ++++++.||.|+||++.+. ..+..+.+|. ..|.+++|+|. ++++|++++.||.|++||+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~--~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT--APVLDIAWCPH-NDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCS--SCEEEEEECTT-CTTEEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCC--CCEEEEEeCCC-CCCEEEEEeCCCeEEEEEcc
Confidence 345688888765 4446889999999999654 2344566777 66999999984 45899999999999999999
Q ss_pred CCccCC---CCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeecc-CCCCC----eEecCCCCeEE
Q 024245 95 NGGLSS---NPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDS-LCDSK----DDVPAEGPKYM 164 (270)
Q Consensus 95 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~s~~~~~~~ 164 (270)
++.... .++..+..+......+.+.... ........+...+|++..++.+.... .+|.. ++|+|++..++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 875422 2344566666555555554443 23334456678889999887766543 55665 89999998665
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe---cCCCcEEEEEcCCC
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNP 241 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~---~~dg~i~vwd~~~~ 241 (270)
+++.|+.|++||+++++.+..+.. +|.. ..+.++. |+|+ ++ +|++| +.|+.|++||+++.
T Consensus 193 --~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~---~~~~~~~-~~~~---~~-~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 193 --TSCRDKRVRVIEPRKGTVVAEKDR-------PHEG---TRPVHAV-FVSE---GK-ILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp --EEETTSEEEEEETTTTEEEEEEEC-------SSCS---SSCCEEE-ECST---TE-EEEEEECTTCCEEEEEEETTBC
T ss_pred --EEecCCcEEEEeCCCCceeeeecc-------CCCC---CcceEEE-EcCC---Cc-EEEEeccCCCCceEEEEcCccc
Confidence 456799999999999999888832 5532 2356676 9984 55 88888 79999999999985
Q ss_pred Ccceeeee-ccCCCeeEEEeecCCCce
Q 024245 242 GIPLTAMK-VHLEPGLECSMWRNPITM 267 (270)
Q Consensus 242 ~~~~~~~~-~~~~~v~~~~~s~~g~~l 267 (270)
..++.... .|...+.+++|+|++.+|
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEE
Confidence 55454444 467889999999999876
No 110
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=3e-27 Score=179.51 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=119.7
Q ss_pred CcccccccccccEEEEEEeC---CCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEeeCCCCCEE-----
Q 024245 9 DPVAVLRGHRASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKV----- 79 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l----- 79 (270)
+.+..+.+|...++.++|++ ++++|++|+.|++|+|||++++++++++.+|.. ...+.+++|+| +|.++
T Consensus 169 ~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp--dG~~lvs~s~ 246 (356)
T 2w18_A 169 GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE--MGLLFIVLSH 246 (356)
T ss_dssp CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE--TTEEEEEEC-
T ss_pred ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC--CCCEEEEecc
Confidence 45666777888888888888 668999999999999999999999999986431 24588889999 88876
Q ss_pred -------EEEeCCCcEEEEEccCCccCCCCccc--ee-cccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC
Q 024245 80 -------ISQGRDGTVKCWDIENGGLSSNPSLT--IK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL 149 (270)
Q Consensus 80 -------~s~~~d~~i~~wd~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (270)
++|+.|++|++||..+++... .+. ++ ++...+
T Consensus 247 ~~~~w~laSGs~D~tIklWd~~tgk~l~--v~~~~~p~Gh~~~~------------------------------------ 288 (356)
T 2w18_A 247 PCAKESESLRSPVFQLIVINPKTTLSVG--VMLYCLPPGQAGRF------------------------------------ 288 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEE--EEEECCCTTCCCCE------------------------------------
T ss_pred CCCcceeeccCCCcEEEEEECCCCEEEE--EEEeeccCCCccee------------------------------------
Confidence 567889999999998886432 000 00 000000
Q ss_pred CCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245 150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229 (270)
Q Consensus 150 ~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~ 229 (270)
+..+.++. ++ ++++.|++|+|||+.+++++.++. +|... .+..++ |+|+ |+ +|++|+.
T Consensus 289 ----lsg~~sg~-~l-ASgS~DgTIkIWDl~tGk~l~tL~--------gH~~~---vvs~va-fSPD---G~-~LaSGS~ 346 (356)
T 2w18_A 289 ----LEGDVKDH-CA-AAILTSGTIAIWDLLLGQCTALLP--------PVSDQ---HWSFVK-WSGT---DS-HLLAGQK 346 (356)
T ss_dssp ----EEEEEETT-EE-EEEETTSCEEEEETTTCSEEEEEC--------CC--C---CCCEEE-ECSS---SS-EEEEECT
T ss_pred ----EccccCCC-EE-EEEcCCCcEEEEECCCCcEEEEec--------CCCCC---eEEEEE-ECCC---CC-EEEEEEC
Confidence 11112233 33 467789999999999999999998 67432 223466 9995 55 9999999
Q ss_pred CCcEEEEEc
Q 024245 230 DGSILVWDI 238 (270)
Q Consensus 230 dg~i~vwd~ 238 (270)
|++|+|||+
T Consensus 347 D~TIklWd~ 355 (356)
T 2w18_A 347 DGNIFVYHY 355 (356)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEecC
Confidence 999999996
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.1e-26 Score=185.36 Aligned_cols=223 Identities=8% Similarity=0.011 Sum_probs=158.8
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc---eeEEEeecCC---------------------------------
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSA--------------------------------- 61 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~--------------------------------- 61 (270)
..++.+++|+++|++|+++ .++.|++||+.+++ .+..+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977766 47799999999998 6655543221
Q ss_pred -------------------CcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEcc--CCccCCCCcccee--cccceEEEEe
Q 024245 62 -------------------AHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIE--NGGLSSNPSLTIK--TNSYHFCKLS 117 (270)
Q Consensus 62 -------------------~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~~~~~~~~~~~~--~~~~~~~~~~ 117 (270)
...|.+++|+| ++++| ++++.||.|++||+. +++... .+. .+......+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLK----LRKRFCFSKRPNAIS 156 (450)
T ss_dssp -----------------CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEE----EEEEEECSSCEEEEE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceee----eeecccCCCCceEEE
Confidence 02599999999 98986 899999999999998 665433 333 3333344444
Q ss_pred eccCCcccee-cCCCCceEEEeccCceee---eccCCCCC----eEecCC---CCeEEEEecCCCceEEEEeCCCcceee
Q 024245 118 LVKEPYANAK-QANEPKDCYEREVGETVD---TDSLCDSK----DDVPAE---GPKYMAVAGEQLSEVEIWDLNTAERCT 186 (270)
Q Consensus 118 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~s~~---~~~~~~~~~~~d~~i~iwd~~~~~~~~ 186 (270)
+......... ...+.+..|++...+... ..+.+|.. ++|+|+ ++.+ + +++.|+.|++||+++++.+.
T Consensus 157 ~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l-~-s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFI-I-TSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEE-E-EEETTSCEEEEEESCTTCEE
T ss_pred EcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEE-E-EEcCCCcEEEEECCCCceee
Confidence 4332222222 223445667776665432 24455655 899999 6544 3 56679999999999998887
Q ss_pred eeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc---------------
Q 024245 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--------------- 251 (270)
Q Consensus 187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------- 251 (270)
.+.. +| ...+.+++ |+ + ++ +|++|+.|+.|++||+++ ++++..+..+
T Consensus 235 ~~~~-------~h----~~~v~~~~-~s-d---~~-~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (450)
T 2vdu_B 235 KWLF-------GH----KHFVSSIC-CG-K---DY-LLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPP 296 (450)
T ss_dssp EECC-------CC----SSCEEEEE-EC-S---TT-EEEEEESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC--
T ss_pred eeec-------CC----CCceEEEE-EC-C---CC-EEEEEeCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccc
Confidence 7442 56 34678887 98 5 33 999999999999999998 7777777632
Q ss_pred ----------CCCeeEEEeecCCCce
Q 024245 252 ----------LEPGLECSMWRNPITM 267 (270)
Q Consensus 252 ----------~~~v~~~~~s~~g~~l 267 (270)
...|.+++|+|++.+|
T Consensus 297 ~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 297 RFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp --------CBCCCEEEEEECSSSSEE
T ss_pred cccccccccceEEEEEEEEeCCCCEE
Confidence 3578999999999876
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-26 Score=184.30 Aligned_cols=186 Identities=8% Similarity=0.027 Sum_probs=137.3
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC---CcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
+|...|.+++|||+|.+||+++.||.|++||.+. ++..+. |.. ...|.+++|+| +|++|++|+.||+|++||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP--DG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP--IESSIVVGNEDGELQFFS 157 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS--SSSCEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC--CCCEEEEEcCCCEEEEEE
Confidence 4688999999999999999999999999999654 665665 541 12599999999 999999999999999999
Q ss_pred ccCCccCCC---CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245 93 IENGGLSSN---PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (270)
Q Consensus 93 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~ 165 (270)
+.++..... .+.+++.+ ..+|.. ++|+|+| ++
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~--------------------------------------~~gh~~~V~sVawSPdg--La- 196 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLS--------------------------------------DAGSKDWVTHIVWYEDV--LV- 196 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECS--------------------------------------CTTCCCCEEEEEEETTE--EE-
T ss_pred CCCCccccccceeeeeeecc--------------------------------------cccccccEEEEEEcCCc--EE-
Confidence 998743110 01111111 111222 6799999 43
Q ss_pred EecCCCceEEEEeCCCccee---eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 166 VAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
+++.|++|++||+..++.. .++.. +| ...+.+++ |+ . + +||+++ ++.|++||+.+ +
T Consensus 197 -ass~D~tVrlWd~~~~~~~~~~~tL~~-------~h----~~~V~sva-Fs-g----~-~LASa~-~~tIkLWd~~~-~ 255 (588)
T 2j04_A 197 -AALSNNSVFSMTVSASSHQPVSRMIQN-------AS----RRKITDLK-IV-D----Y-KVVLTC-PGYVHKIDLKN-Y 255 (588)
T ss_dssp -EEETTCCEEEECCCSSSSCCCEEEEEC-------CC----SSCCCCEE-EE-T----T-EEEEEC-SSEEEEEETTT-T
T ss_pred -EEeCCCeEEEEECCCCccccceeeecc-------cc----cCcEEEEE-EE-C----C-EEEEEe-CCeEEEEECCC-C
Confidence 3445899999999877742 45532 44 35688887 98 2 2 888887 69999999997 5
Q ss_pred cceeeeeccCCCeeEEEe--ecCCCcee
Q 024245 243 IPLTAMKVHLEPGLECSM--WRNPITMS 268 (270)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~--s~~g~~ls 268 (270)
+......+|.+.|.+++| +||+..|.
T Consensus 256 ~~~~~~~gh~~~V~~va~~~s~d~~~La 283 (588)
T 2j04_A 256 SISSLKTGSLENFHIIPLNHEKESTILL 283 (588)
T ss_dssp EEEEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred eEEEEEcCCCceEEEEEeeeCCCCCEEE
Confidence 553333389999999999 99997654
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=3.7e-25 Score=175.81 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=166.3
Q ss_pred CcccccccccccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG 86 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~ 86 (270)
+++..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+ ..+.+++|+| ++++|+ +++.++
T Consensus 23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~---~~v~~~~~sp--dg~~l~~~~~~~~ 96 (391)
T 1l0q_A 23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---SSPQGVAVSP--DGKQVYVTNMASS 96 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---SSEEEEEECT--TSSEEEEEETTTT
T ss_pred eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---CCccceEECC--CCCEEEEEECCCC
Confidence 4566677664 58999999999976 67889999999999999998888766 3599999999 888775 555779
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCcc--ceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCe
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA--NAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPK 162 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~ 162 (270)
.|++||+.+++... .+.... ....+.+...... ......+...+|++.+++.......+... ++|+|+++.
T Consensus 97 ~v~v~d~~~~~~~~----~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~ 171 (391)
T 1l0q_A 97 TLSVIDTTSNTVAG----TVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK 171 (391)
T ss_dssp EEEEEETTTTEEEE----EEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred EEEEEECCCCeEEE----EEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCE
Confidence 99999999886543 232222 2222333322222 22333556777888877665543322222 899999987
Q ss_pred EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec---CCCcEEEEEcC
Q 024245 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIR 239 (270)
Q Consensus 163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~---~dg~i~vwd~~ 239 (270)
+++ +++.++.|++||+++++.+..+.. ...+.+++ |+|+ ++ +|++++ .++.|++||++
T Consensus 172 l~~-~~~~~~~v~~~d~~~~~~~~~~~~-------------~~~~~~~~-~~~~---g~-~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 172 VYV-ANFDSMSISVIDTVTNSVIDTVKV-------------EAAPSGIA-VNPE---GT-KAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp EEE-EETTTTEEEEEETTTTEEEEEEEC-------------SSEEEEEE-ECTT---SS-EEEEEEECSSCCEEEEEETT
T ss_pred EEE-EeCCCCEEEEEECCCCeEEEEEec-------------CCCccceE-ECCC---CC-EEEEEecCcCCCcEEEEECC
Confidence 765 566689999999999988877762 23567777 9995 55 666666 78999999999
Q ss_pred CCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+ ++++..+..|. .+.+++|+|+|++|
T Consensus 233 ~-~~~~~~~~~~~-~~~~~~~s~dg~~l 258 (391)
T 1l0q_A 233 T-NKITARIPVGP-DPAGIAVTPDGKKV 258 (391)
T ss_dssp T-TEEEEEEECCS-SEEEEEECTTSSEE
T ss_pred C-CeEEEEEecCC-CccEEEEccCCCEE
Confidence 8 78888888764 57899999999865
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=5.6e-26 Score=182.83 Aligned_cols=212 Identities=16% Similarity=0.153 Sum_probs=158.5
Q ss_pred CCcccccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCce-------eEEEeecCCCcceEEEEEeeCCCCCEE
Q 024245 8 PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRT-------VSSSWVHSAAHGIVSVATGPSIGLNKV 79 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l 79 (270)
.+++..+.+|...|++++|+|++. +|++|+.||.|++||+..+.. ...+..|. ..|.+++|+|. ++.+|
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~p~-~~~~l 247 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT--AVVEDVAWHLL-HESLF 247 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS--SCEEEEEECSS-CTTEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC--CCEeeeEEeCC-CCCEE
Confidence 467788999999999999999988 999999999999999987422 34566676 66999999994 35788
Q ss_pred EEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeeeccCCCCC----
Q 024245 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDSLCDSK---- 153 (270)
Q Consensus 80 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (270)
++++.|+.|++||++++... .+...+..+......+.+..... .......+.+.+|+++........+.+|..
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~ 326 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTS-KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 326 (430)
T ss_dssp EEEETTSEEEEEETTCSCSS-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEE
T ss_pred EEEeCCCeEEEEECCCCCCC-cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEE
Confidence 99999999999999976421 22344555555555555544332 233445567888999886555556666665
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCc--------------ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTA--------------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~--------------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~ 219 (270)
++|+|+++.+++ +++.|+.|+|||+... +.+..+. +| ...+.+++ |+|+
T Consensus 327 i~~sp~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~~p~--- 389 (430)
T 2xyi_A 327 VQWSPHNETILA-SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--------GH----TAKISDFS-WNPN--- 389 (430)
T ss_dssp EEECSSCTTEEE-EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC--------CC----SSCEEEEE-ECSS---
T ss_pred EEECCCCCCEEE-EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC--------CC----CCCceEEE-ECCC---
Confidence 899999987776 4556899999999862 3444444 45 34688888 9995
Q ss_pred CceEEEEecCCCcEEEEEcCC
Q 024245 220 GFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 220 g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+..+|++++.||.|++|++..
T Consensus 390 ~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 390 EPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp STTEEEEEETTSEEEEEEECH
T ss_pred CCCEEEEEECCCCEEEeEccc
Confidence 434899999999999999875
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.4e-26 Score=193.45 Aligned_cols=212 Identities=17% Similarity=0.193 Sum_probs=158.0
Q ss_pred CcccccccccccEEEEEEeCC--CCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCC--CCEEEEE
Q 024245 9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIG--LNKVISQ 82 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~ 82 (270)
+++..+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.+++ .+..+..|. ..|.+++|+| + ++.++++
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~--~~V~~v~~sp--~~~~~~l~sg 119 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAP--HEYGPLLLVA 119 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECC--GGGCSEEEEE
T ss_pred ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC--CCeEEEEECC--CCCCCEEEEE
Confidence 567788999999999999987 9999999999999999999886 666677777 6799999999 7 8999999
Q ss_pred eCCCcEEEEEccCCccCCCCccceecccceEEEEeecc--------------CCccceecCCCCceEEEeccCc---eee
Q 024245 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--------------EPYANAKQANEPKDCYEREVGE---TVD 145 (270)
Q Consensus 83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~---~~~ 145 (270)
+.||.|++||++++.... ......+......+.+.. ..........+.+.+|++.... ...
T Consensus 120 s~dg~I~vwdl~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 197 (753)
T 3jro_A 120 SSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (753)
T ss_dssp ETTSEEEEEECCSSSCCC--CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred eCCCcEEEEEeecCCCcc--eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence 999999999999875432 334455555555555443 2223344446677889998764 344
Q ss_pred eccCCCCC----eEecCC---CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245 146 TDSLCDSK----DDVPAE---GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218 (270)
Q Consensus 146 ~~~~~~~~----~~~s~~---~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~ 218 (270)
..+.+|.. ++|+|+ +. +++ +++.||.|++||+++++....... .........+.+++ |+|+
T Consensus 198 ~~~~~h~~~V~~l~~sp~~~~~~-~l~-s~s~Dg~I~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~l~-~spd-- 265 (753)
T 3jro_A 198 STLEGHSDWVRDVAWSPTVLLRS-YLA-SVSQDRTCIIWTQDNEQGPWKKTL-------LKEEKFPDVLWRAS-WSLS-- 265 (753)
T ss_dssp EEECCCSSCEEEEEECCCCSSSE-EEE-EEESSSCEEEEEESSSSSCCBCCB-------SSSSCCSSCCCCEE-ECTT--
T ss_pred eeecCCCCcEEEEEeccCCCCCC-EEE-EEecCCEEEEecCCCCCCcceeEE-------eccCCCCCceEEEE-EcCC--
Confidence 45667766 899999 54 444 566799999999998652211110 01111245677887 9995
Q ss_pred CCceEEEEecCCCcEEEEEcCC
Q 024245 219 QGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 219 ~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
|+ +|++|+.||.|++||+..
T Consensus 266 -g~-~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 266 -GN-VLALSGGDNKVTLWKENL 285 (753)
T ss_dssp -TC-CEEEECSSSCEECCBCCS
T ss_pred -CC-EEEEEcCCCEEEEEecCC
Confidence 54 899999999999999986
No 116
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-26 Score=202.03 Aligned_cols=231 Identities=10% Similarity=0.066 Sum_probs=147.8
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee--EEEe---------ecCCCcceEEEEEeeCCCCCEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSW---------VHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~---------~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
..++||...+..++|+|++++|++|+.|++|++||+.++... ..+. +|. ..|.+++|+| ++++|+
T Consensus 429 ~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~--~~V~svafsp--dg~~LA 504 (902)
T 2oaj_A 429 YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE--LAVDKISFAA--ETLELA 504 (902)
T ss_dssp CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS--CCEEEEEEET--TTTEEE
T ss_pred CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC--CceeEEEecC--CCCeEE
Confidence 356788888888888999999999999999999999887422 1121 455 6699999999 999999
Q ss_pred EEeCCCcEEEEEccCCccCCCCccce-ecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eE
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DD 155 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 155 (270)
+|+.||+|++||+.+++......... ......+..+.+...+............ .+..+-.....+.+|.. ++
T Consensus 505 sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~l~~h~~~V~sva 582 (902)
T 2oaj_A 505 VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPT--GVRQGFMPSTAVHANKGKTSAIN 582 (902)
T ss_dssp EEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCT--TCSEEEEEEEEECCCSCSEEEEE
T ss_pred EEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCC--CCCCccceeEEEEcCCCcEEEEE
Confidence 99999999999998874211000000 0000000000000000000000000000 00011122345566766 89
Q ss_pred ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCC-CcccCCCceeeeeeecC-----CCCCCCceEEEEecC
Q 024245 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYL-----PSKSQGFVNVLAGYE 229 (270)
Q Consensus 156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~-----p~~~~g~~~l~~~~~ 229 (270)
|||+| . ++ +|+.|++|+|||++++..+...... ... +| ...+++++ |+ |++.+++ +|++|+.
T Consensus 583 fSpdG-~-lA-sgs~D~tv~lwd~~~~~~~~~~~~~---~~~~gh----~~~V~sv~-Fs~~~~~~Dg~~~~-~l~sgs~ 650 (902)
T 2oaj_A 583 NSNIG-F-VG-IAYAAGSLMLIDRRGPAIIYMENIR---EISGAQ----SACVTCIE-FVIMEYGDDGYSSI-LMVCGTD 650 (902)
T ss_dssp ECBTS-E-EE-EEETTSEEEEEETTTTEEEEEEEGG---GTCSSC----CCCEEEEE-EEEEECTTSSSEEE-EEEEEET
T ss_pred ecCCc-E-EE-EEeCCCcEEEEECCCCeEEEEeehh---Hhcccc----ccceEEEE-EEEEecCCCCCcce-EEEEEec
Confidence 99999 4 44 5777999999999877765431110 010 34 55788888 99 8654456 9999999
Q ss_pred CCcEEEEEc---CCCCcceeeeeccC-----CCeeEEE-ee
Q 024245 230 DGSILVWDI---RNPGIPLTAMKVHL-----EPGLECS-MW 261 (270)
Q Consensus 230 dg~i~vwd~---~~~~~~~~~~~~~~-----~~v~~~~-~s 261 (270)
|++|++||+ .+ ++....+.+|. ++|.+++ |+
T Consensus 651 D~tv~~wd~~p~~~-g~~~~~~~~~~~~~~~~~v~~i~~~~ 690 (902)
T 2oaj_A 651 MGEVITYKILPASG-GKFDVQLMDITNVTSKGPIHKIDAFS 690 (902)
T ss_dssp TSEEEEEEEEECGG-GCEEEEEEEEEECCSSCCCCEEEEEE
T ss_pred CCcEEEEEEecCCC-CcEEEEecCceecCCCCceEEEEeEe
Confidence 999999999 66 77778887774 6788887 77
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=6.1e-25 Score=176.83 Aligned_cols=225 Identities=10% Similarity=0.002 Sum_probs=165.3
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEE
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCW 91 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~w 91 (270)
.+.+|...|++++|++++.++++++.|+.|++||+++++.+..+..+. ..+.+++|+| +++.++ +++.|+.|++|
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG--KWSKILLYDP--IRDLVYCSNWISEDISVI 239 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS--SSEEEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC--CCeeEEEEcC--CCCEEEEEecCCCcEEEE
Confidence 567899999999999999999999999999999999999998888777 5699999999 888775 55589999999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecC---------CCCceEEEeccCceeeeccC-CCCC-eEecCCC
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA---------NEPKDCYEREVGETVDTDSL-CDSK-DDVPAEG 160 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~-~~~s~~~ 160 (270)
|+++++... .+.... ....+.+........... .+...+|++.+++....... .... ++|+|++
T Consensus 240 d~~~~~~~~----~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 314 (433)
T 3bws_A 240 DRKTKLEIR----KTDKIG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTE 314 (433)
T ss_dssp ETTTTEEEE----ECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSST
T ss_pred ECCCCcEEE----EecCCC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCC
Confidence 999876533 222221 222233322221111111 23455788877765443211 1111 8999999
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC-----------
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE----------- 229 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~----------- 229 (270)
+.+++ +++.|+.|++||+.+++.+..+.. ...+.+++ |+|+ |+ +|++++.
T Consensus 315 ~~l~~-~~~~~~~v~v~d~~~~~~~~~~~~-------------~~~~~~~~-~s~d---g~-~l~~~~~~~~~~~~~~~~ 375 (433)
T 3bws_A 315 NKIYV-SDMCCSKIEVYDLKEKKVQKSIPV-------------FDKPNTIA-LSPD---GK-YLYVSCRGPNHPTEGYLK 375 (433)
T ss_dssp TEEEE-EETTTTEEEEEETTTTEEEEEEEC-------------SSSEEEEE-ECTT---SS-EEEEEECCCCCTTTCTTS
T ss_pred CEEEE-EecCCCEEEEEECCCCcEEEEecC-------------CCCCCeEE-EcCC---CC-EEEEEecCCCcccccccc
Confidence 87776 556689999999999888877762 23466777 9995 54 6666655
Q ss_pred ----CCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 230 ----DGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 230 ----dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
||.|++||+.+ ++.+..+.. ...+.+++|+|+|++|
T Consensus 376 ~g~~dg~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l 415 (433)
T 3bws_A 376 KGLVLGKVYVIDTTT-DTVKEFWEA-GNQPTGLDVSPDNRYL 415 (433)
T ss_dssp CCSSCCEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTSCEE
T ss_pred ccccceEEEEEECCC-CcEEEEecC-CCCCceEEEcCCCCEE
Confidence 57999999998 788888876 4679999999999875
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-26 Score=180.64 Aligned_cols=179 Identities=9% Similarity=0.001 Sum_probs=134.6
Q ss_pred EeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccc
Q 024245 26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT 105 (270)
Q Consensus 26 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 105 (270)
+.+++.+|++|+.||.|++||+.+++.+..+. . ..|.++.|+| . +++++.|++|++|+.....
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~--~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~-------- 106 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--T--PNPRTGGEHP--A---IISRGPCNRLLLLYPGNQI-------- 106 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--E--ECCCTTCCCC--S---EEEECSTTEEEEEETTTEE--------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--c--CCceeeeeCC--c---eEEecCCCeEEEEEccCce--------
Confidence 33577899999999999999999999888877 2 4588999999 5 9999999999999986421
Q ss_pred eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecC--CCCeEEEEecCCCceEEEEeC
Q 024245 106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--EGPKYMAVAGEQLSEVEIWDL 179 (270)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~--~~~~~~~~~~~~d~~i~iwd~ 179 (270)
..|+....+.+.....+|.. ++|+| ++++++ +++.|++|++||+
T Consensus 107 ----------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 107 ----------------------------TILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFI--WADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEE--EEETTCCEEEEES
T ss_pred ----------------------------EEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEE--EEeCCCcEEEEEC
Confidence 11122222212212222222 67899 887554 5667999999999
Q ss_pred CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce-eeeec-cCCCeeE
Q 024245 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKV-HLEPGLE 257 (270)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~-~~~~v~~ 257 (270)
++++.+..+. .+ ....+.+++ |+|+ |. +|++|+.||.|++||+++ ++.+ ..+.. |..+|++
T Consensus 157 ~~~~~~~~~~--------~~---~~~~i~~~~-~~pd---g~-~lasg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~ 219 (343)
T 3lrv_A 157 EDDSQYIVHS--------AK---SDVEYSSGV-LHKD---SL-LLALYSPDGILDVYNLSS-PDQASSRFPVDEEAKIKE 219 (343)
T ss_dssp SSSCEEEEEC--------CC---SSCCCCEEE-ECTT---SC-EEEEECTTSCEEEEESSC-TTSCCEECCCCTTSCEEE
T ss_pred CCCcEEEEEe--------cC---CCCceEEEE-ECCC---CC-EEEEEcCCCEEEEEECCC-CCCCccEEeccCCCCEEE
Confidence 9999876665 22 233477887 9995 55 999999999999999999 5655 78887 9999999
Q ss_pred EEeecCCCcee
Q 024245 258 CSMWRNPITMS 268 (270)
Q Consensus 258 ~~~s~~g~~ls 268 (270)
++|+|+|.+|.
T Consensus 220 l~fs~~g~~l~ 230 (343)
T 3lrv_A 220 VKFADNGYWMV 230 (343)
T ss_dssp EEECTTSSEEE
T ss_pred EEEeCCCCEEE
Confidence 99999998764
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.2e-25 Score=173.30 Aligned_cols=168 Identities=10% Similarity=0.024 Sum_probs=122.8
Q ss_pred cccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 16 GHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 16 ~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
+|.+.|.+++|+| +++++++|+.||.|++||+++++.......+.. ..|.+++|+| ++.+|++|+.||.|++||+
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~~p--dg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD-VEYSSGVLHK--DSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-CCCCEEEECT--TSCEEEEECTTSCEEEEES
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-CceEEEEECC--CCCEEEEEcCCCEEEEEEC
Confidence 5778999999999 999999999999999999999988766644432 5699999999 9999999999999999999
Q ss_pred cCCccCCCCccceec-ccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc
Q 024245 94 ENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~ 172 (270)
++++... ..+.. +...... ++|+|++.+++ +++ |+
T Consensus 200 ~~~~~~~---~~~~~~h~~~v~~--------------------------------------l~fs~~g~~l~--s~~-~~ 235 (343)
T 3lrv_A 200 SSPDQAS---SRFPVDEEAKIKE--------------------------------------VKFADNGYWMV--VEC-DQ 235 (343)
T ss_dssp SCTTSCC---EECCCCTTSCEEE--------------------------------------EEECTTSSEEE--EEE-SS
T ss_pred CCCCCCc---cEEeccCCCCEEE--------------------------------------EEEeCCCCEEE--EEe-CC
Confidence 9886431 12222 2221111 56999997655 344 45
Q ss_pred eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC-CCcEEEEEcCCCC
Q 024245 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNPG 242 (270)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~-dg~i~vwd~~~~~ 242 (270)
.|++||+++++.+..+.... .|...... .+++ |+|+ |+ +|++++. |+.|++|++....
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~--~~~~-~~~~---g~-~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 236 TVVCFDLRKDVGTLAYPTYT-----IPEFKTGT--VTYD-IDDS---GK-NMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp BEEEEETTSSTTCBSSCCCB-----C-----CC--EEEE-ECTT---SS-EEEEEETTTTEEEEEEECTTT
T ss_pred eEEEEEcCCCCcceeecccc-----cccccccc--eEEE-ECCC---CC-EEEEecCCCCcEEEEEEcccc
Confidence 99999999988766655100 12111111 3466 9995 55 8888887 9999999997633
No 120
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=2.5e-24 Score=171.62 Aligned_cols=216 Identities=14% Similarity=0.133 Sum_probs=150.8
Q ss_pred ccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC-CCCEEEEEeCCCcEEEEE
Q 024245 15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 15 ~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d~~i~~wd 92 (270)
.+|...|.+++|+| ++.+|++++.||.|++||+.+++....+.. . ..+.++.|+|.. ++.++++++.|+.|++||
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-E--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-S--SCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-C--CceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 46999999999999 778999999999999999999998888763 3 569999999832 234899999999999999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeeecc---------------CCCCC--
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDS---------------LCDSK-- 153 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-- 153 (270)
+++++.. ..+..+......+.+..... .......+...+|++.........+ .+|..
T Consensus 173 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 173 LKSGSCS----HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp SSSSCCC----EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred CCCccee----eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 9988653 35555555555555544433 3344456678889987765332222 34444
Q ss_pred --eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCC-------------------------------------
Q 024245 154 --DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG------------------------------------- 194 (270)
Q Consensus 154 --~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------------------------------- 194 (270)
++|+|+++.++ +++.|+.|++||+++++....+......
T Consensus 249 ~~~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 249 NGLCFTSDGLHLL--TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp EEEEECTTSSEEE--EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred eEEEEcCCCCEEE--EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence 89999998665 4556899999999876644322210000
Q ss_pred --CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 195 --GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 195 --~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
...+| ...+.+++ |+|+ ++ +|++|+.||.|++||+++ .+++....
T Consensus 327 ~~~~~~~----~~~v~~~~-~s~~---~~-~l~s~~~dg~i~iw~~~~-~~~~~~~~ 373 (408)
T 4a11_B 327 ITMLKGH----YKTVDCCV-FQSN---FQ-ELYSGSRDCNILAWVPSL-YEPVPDDD 373 (408)
T ss_dssp EEEECCC----SSCEEEEE-EETT---TT-EEEEEETTSCEEEEEECC---------
T ss_pred eeeeccC----CCeEEEEE-EcCC---CC-EEEEECCCCeEEEEeCCC-CCccCCCC
Confidence 00133 35678887 9995 44 999999999999999998 66555443
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=5.5e-24 Score=166.97 Aligned_cols=188 Identities=10% Similarity=0.083 Sum_probs=137.3
Q ss_pred ccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC-
Q 024245 19 ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG- 96 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~- 96 (270)
..+..+++.+++..+ ++++.|+.|++||+.+++++..+.. . ..|.+++|++ + .++.+ .|+.|++||+.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-~--~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~ 130 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-D--APVKDLFLSR--E--FIVVS-YGDVISVFKFGNPW 130 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC-S--SCEEEEEECS--S--EEEEE-ETTEEEEEESSTTC
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC-C--CceEEEEEcC--C--EEEEE-EcCEEEEEECCCCc
Confidence 357788888888776 5688889999999999999988874 3 5699999988 4 44444 4789999999987
Q ss_pred ccCCCCccceecccceEEEEeeccCCccce--ecCCCCceEEEeccCce--------------e-eeccCCCCC----eE
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANA--KQANEPKDCYEREVGET--------------V-DTDSLCDSK----DD 155 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~----~~ 155 (270)
+... .+.. ....+.++. ..... ....+.+.+|++..+.. . ...+.+|.. ++
T Consensus 131 ~~~~----~~~~-~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~ 202 (355)
T 3vu4_A 131 KRIT----DDIR-FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR 202 (355)
T ss_dssp CBSS----CCEE-EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE
T ss_pred eeeE----Eecc-CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE
Confidence 5433 3333 222333332 11122 23456678899887541 1 345677877 89
Q ss_pred ecCCCCeEEEEecCCCce-EEEEeCCCcceeeeeccCcCCCCCC-cccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 156 VPAEGPKYMAVAGEQLSE-VEIWDLNTAERCTRLHQNSCGGSPN-FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 156 ~s~~~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
|+|+|.+++ +|+.|++ |+|||+++++++.++.. + | ...+.+++ |+|+ |+ +|++++.|++|
T Consensus 203 ~s~~g~~l~--s~s~d~~~v~iwd~~~~~~~~~~~~-------g~h----~~~v~~~~-~s~~---~~-~l~s~s~d~~v 264 (355)
T 3vu4_A 203 LNRKSDMVA--TCSQDGTIIRVFKTEDGVLVREFRR-------GLD----RADVVDMK-WSTD---GS-KLAVVSDKWTL 264 (355)
T ss_dssp ECTTSSEEE--EEETTCSEEEEEETTTCCEEEEEEC-------TTC----CSCEEEEE-ECTT---SC-EEEEEETTCEE
T ss_pred ECCCCCEEE--EEeCCCCEEEEEECCCCcEEEEEEc-------CCC----CCcEEEEE-ECCC---CC-EEEEEECCCEE
Confidence 999997544 6778998 99999999999998873 3 5 35788888 9995 55 99999999999
Q ss_pred EEEEcCC
Q 024245 234 LVWDIRN 240 (270)
Q Consensus 234 ~vwd~~~ 240 (270)
++||++.
T Consensus 265 ~iw~~~~ 271 (355)
T 3vu4_A 265 HVFEIFN 271 (355)
T ss_dssp EEEESSC
T ss_pred EEEEccC
Confidence 9999986
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.93 E-value=9.7e-25 Score=171.58 Aligned_cols=202 Identities=11% Similarity=0.131 Sum_probs=144.5
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEE--eeCCCCCEEEEEeCCCcE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT--GPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~s~~~d~~i 88 (270)
...+.+|...|++++|+|++++|++++.||.|++||+.+++.+. +..|. ..|.+++| +| ++++|++++.|+.|
T Consensus 79 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~--~~v~~~~~~~~~--~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHD--APVKTIHWIKAP--NYSCVMTGSWDKTL 153 (368)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECS--SCEEEEEEEECS--SCEEEEEEETTSEE
T ss_pred EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-ecccc--CceEEEEEEeCC--CCCEEEEccCCCcE
Confidence 37788999999999999999999999999999999999888776 45576 66999999 66 88899999999999
Q ss_pred EEEEccCCccCCCCccceecccc-----------------------------------------eEEEEeeccCCc----
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSY-----------------------------------------HFCKLSLVKEPY---- 123 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~---- 123 (270)
++||+++++... .+..+.. ............
T Consensus 154 ~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 154 KFWDTRSSNPMM----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp EEECSSCSSCSE----EEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred EEEECCCCcEEE----EEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence 999999876433 2221110 001111111110
Q ss_pred -cceecCCCCceEEEeccCce--eeeccCCCC-------------C---eEecCCCCeEEEEecCCCceEEEEeCCCcce
Q 024245 124 -ANAKQANEPKDCYEREVGET--VDTDSLCDS-------------K---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER 184 (270)
Q Consensus 124 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------------~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~ 184 (270)
.......+...+|++..... ....+.+|. . ++|+|++++++ +++.||.|++||++++++
T Consensus 230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA--TVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE--EEETTSCEEEEETTTTEE
T ss_pred eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEE--EEccCCeEEEEECCCCcE
Confidence 22233344556677766531 112222332 2 89999998654 566799999999999999
Q ss_pred eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 185 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+..+. +| ...+.+++ |+|+ |+ +|++++.|+..+.|++..
T Consensus 308 ~~~~~--------~~----~~~v~~~~-~s~~---g~-~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 308 LKTSE--------QL----DQPISACC-FNHN---GN-IFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEECC--------CC----SSCEEEEE-ECTT---SS-CEEEEECCCSTTCGGGCC
T ss_pred EEEec--------CC----CCCceEEE-ECCC---CC-eEEEEecccccccccccC
Confidence 98888 56 34688888 9995 55 899999998766666554
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=1.8e-24 Score=174.04 Aligned_cols=228 Identities=8% Similarity=-0.011 Sum_probs=165.6
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE-----EeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-----SWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
+..+..+ ..+.+++|+|++.++++++.|+.|++||+.+++.... +.+|. ..|.+++|+| ++.++++++.|
T Consensus 116 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~~s~~~d 190 (433)
T 3bws_A 116 ISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL--GFVETISIPE--HNELWVSQMQA 190 (433)
T ss_dssp EEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC--CEEEEEEEGG--GTEEEEEEGGG
T ss_pred EEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC--CceeEEEEcC--CCEEEEEECCC
Confidence 3344433 4466999999888889999999999999999988763 33455 5699999999 88999999999
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccc--eecCCCCceEEEeccCceeeeccCCCCC---eEecCCC
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN--AKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEG 160 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~ 160 (270)
+.|++||+++++... .+..+......+.+....... .....+...+|++..++.+... ..+.. ++|+|++
T Consensus 191 ~~v~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g 265 (433)
T 3bws_A 191 NAVHVFDLKTLAYKA----TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT-DKIGLPRGLLLSKDG 265 (433)
T ss_dssp TEEEEEETTTCCEEE----EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC-CCCSEEEEEEECTTS
T ss_pred CEEEEEECCCceEEE----EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe-cCCCCceEEEEcCCC
Confidence 999999999876533 444443334444443333222 2223456777898877665433 33333 8999999
Q ss_pred CeEEEEecC------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245 161 PKYMAVAGE------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (270)
Q Consensus 161 ~~~~~~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~ 234 (270)
+.+++++.. .|+.|++||+++++.+..+. | ...+..++ |+|+ ++.++++++.|+.|+
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---------~----~~~~~~~~-~~~~---g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG---------P----PGNKRHIV-SGNT---ENKIYVSDMCCSKIE 328 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE---------E----EECEEEEE-ECSS---TTEEEEEETTTTEEE
T ss_pred CEEEEEECCCCccccCCCeEEEEECCCCcEEeecc---------C----CCCcceEE-ECCC---CCEEEEEecCCCEEE
Confidence 877654321 47899999999988777664 2 22456676 9984 543778889999999
Q ss_pred EEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 235 VWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+||+.+ ++.+..+. +...+.+++|+|+|++|
T Consensus 329 v~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l 359 (433)
T 3bws_A 329 VYDLKE-KKVQKSIP-VFDKPNTIALSPDGKYL 359 (433)
T ss_dssp EEETTT-TEEEEEEE-CSSSEEEEEECTTSSEE
T ss_pred EEECCC-CcEEEEec-CCCCCCeEEEcCCCCEE
Confidence 999998 77777776 67789999999999864
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1e-24 Score=175.88 Aligned_cols=190 Identities=4% Similarity=0.012 Sum_probs=131.5
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce-----------------------------eEEEe-ecCCCc
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-----------------------------VSSSW-VHSAAH 63 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-----------------------------~~~~~-~~~~~~ 63 (270)
-+.....|.+++|+|||+++|+++.|++|+ |...++. ...+. .+ ..
T Consensus 11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~--~~ 86 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP--VC 86 (588)
T ss_dssp SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC--SC
T ss_pred HhHhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC--CC
Confidence 345567899999999999999999999985 4333221 11122 22 26
Q ss_pred ceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCce
Q 024245 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (270)
Q Consensus 64 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (270)
.|.+++|+| +|..|++++.||.|++||..+ +. ..+. +.......++.
T Consensus 87 ~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l----~~l~-~~~~~~~~sv~------------------------ 133 (588)
T 2j04_A 87 YPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--ML----TNLD-SKGNLSSRTYH------------------------ 133 (588)
T ss_dssp CEEEEEECS--SSSCEEEEETTSCEEEEETTE--EE----EECC-CSSCSTTTCEE------------------------
T ss_pred cEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--ee----eecc-CCCccccccEE------------------------
Confidence 799999999 999999999999999999543 11 1111 11000000000
Q ss_pred eeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcce-------eeeeccCcCCCCCCcccCCCceeeeeeecCCC
Q 024245 144 VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS 216 (270)
Q Consensus 144 ~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~ 216 (270)
.++|||+|+.++ +|+.||+|+|||+.++.. +.++. .|.......+.+++ |+|+
T Consensus 134 ---------svafSPDG~~LA--sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~--------~~~~gh~~~V~sVa-wSPd 193 (588)
T 2j04_A 134 ---------CFEWNPIESSIV--VGNEDGELQFFSIRKNSENTPEFYFESSIR--------LSDAGSKDWVTHIV-WYED 193 (588)
T ss_dssp ---------EEEECSSSSCEE--EEETTSEEEEEECCCCTTTCCCCEEEEEEE--------CSCTTCCCCEEEEE-EETT
T ss_pred ---------EEEEcCCCCEEE--EEcCCCEEEEEECCCCccccccceeeeeee--------cccccccccEEEEE-EcCC
Confidence 067999998665 567799999999998753 56664 23222356899998 9994
Q ss_pred CCCCceEEEEecCCCcEEEEEcCCCCc---ceeee-eccCCCeeEEEeecCCCcee
Q 024245 217 KSQGFVNVLAGYEDGSILVWDIRNPGI---PLTAM-KVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 217 ~~~g~~~l~~~~~dg~i~vwd~~~~~~---~~~~~-~~~~~~v~~~~~s~~g~~ls 268 (270)
| +++++.|+.|++||+.. +. ...++ .+|...|.+++|+ +..+++
T Consensus 194 ---g---Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~V~svaFs-g~~LAS 241 (588)
T 2j04_A 194 ---V---LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRKITDLKIV-DYKVVL 241 (588)
T ss_dssp ---E---EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSCCCCEEEE-TTEEEE
T ss_pred ---c---EEEEeCCCeEEEEECCC-CccccceeeecccccCcEEEEEEE-CCEEEE
Confidence 4 78889999999999987 44 23556 4788999999999 444443
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=2.2e-23 Score=165.60 Aligned_cols=206 Identities=12% Similarity=0.090 Sum_probs=152.4
Q ss_pred CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (270)
Q Consensus 31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 109 (270)
.++++++.|+.|++||+.+++.+..+..+ ..+.+++|+| ++++| ++++.|+.|++||+.+++... .+...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~----~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG---SNPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIA----TVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEE----EEECS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC---CCcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEE----EEECC
Confidence 46889999999999999999999888876 3489999999 98876 677799999999999887543 33322
Q ss_pred cceEEEEeeccCCccc--eecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcce
Q 024245 110 SYHFCKLSLVKEPYAN--AKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER 184 (270)
Q Consensus 110 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~ 184 (270)
. ....+.+....... .....+...+|++..++.+.... .+.. ++|+|+++.+++ +++.|+.|++||+.+++.
T Consensus 74 ~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~-~~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 74 S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYV-TNNGDKTVSVINTVTKAV 150 (391)
T ss_dssp S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEE-EETTTTEEEEEETTTTEE
T ss_pred C-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEE-EeCCCCEEEEEECCCCcE
Confidence 2 23333333322222 22234567789988877655433 2333 899999987765 566789999999999998
Q ss_pred eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245 185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 185 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g 264 (270)
+..+. .+ ..+..++ |+|+ ++.++++++.|+.|++||+++ ++.+..+. +...+.+++|+|+|
T Consensus 151 ~~~~~--------~~-----~~~~~~~-~~~d---g~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g 211 (391)
T 1l0q_A 151 INTVS--------VG-----RSPKGIA-VTPD---GTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEG 211 (391)
T ss_dssp EEEEE--------CC-----SSEEEEE-ECTT---SSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTS
T ss_pred EEEEe--------cC-----CCcceEE-ECCC---CCEEEEEeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCC
Confidence 88887 33 2346676 9985 543557888999999999998 77777776 45688999999999
Q ss_pred Cce
Q 024245 265 ITM 267 (270)
Q Consensus 265 ~~l 267 (270)
.+|
T Consensus 212 ~~l 214 (391)
T 1l0q_A 212 TKA 214 (391)
T ss_dssp SEE
T ss_pred CEE
Confidence 765
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=6.4e-25 Score=174.61 Aligned_cols=200 Identities=15% Similarity=0.100 Sum_probs=112.7
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeE-----EEeecCCCcceEEEEEeeC------CCCCEEEEEeCC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-----SSWVHSAAHGIVSVATGPS------IGLNKVISQGRD 85 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~------~~~~~l~s~~~d 85 (270)
|...+....+.+++.+|++|+.|++|+|||+.+++... .+.+|. +.|.+++|+|. .++++|+|++.|
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~--~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH--NFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS--SCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC--CceEEEEEccccccccCCCCCEEEEEECC
Confidence 33333444444566789999999999999999876543 345777 66999999872 156899999999
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEE
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 165 (270)
++|++||++++.... ....+..... + ++|+|++..+++
T Consensus 166 ~tv~~Wd~~~~~~~~----~~~~~~~~v~--~------------------------------------v~~~p~~~~~l~ 203 (393)
T 4gq1_A 166 CTLIIWRLTDEGPIL----AGYPLSSPGI--S------------------------------------VQFRPSNPNQLI 203 (393)
T ss_dssp SEEEEEEEETTEEEE----EEEECSSCEE--E------------------------------------EEEETTEEEEEE
T ss_pred CeEEEEECCCCceee----eecCCCCCcE--E------------------------------------EEECCCCCceEE
Confidence 999999998764321 2222211111 0 569999876665
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCC-------------CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCG-------------GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~ 232 (270)
+++.|++|++||+++++........... ............+.++. |.+. +++ .|++++.|+.
T Consensus 204 -~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~-~~~~--dg~-~l~s~s~d~~ 278 (393)
T 4gq1_A 204 -VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR-WIGS--DGS-GILAMCKSGA 278 (393)
T ss_dssp -EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE-EETT--TTC-EEEEECTTSE
T ss_pred -ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee-eecC--CCC-EEEEEeCCCC
Confidence 5778999999999988755443311000 00000011233455666 6532 566 9999999999
Q ss_pred EEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245 233 ILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 233 i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
+++||+.. ++....+..|...+..+.+.|+++.
T Consensus 279 i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (393)
T 4gq1_A 279 WLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQG 311 (393)
T ss_dssp EEEEEC--------------------CCSCSEEE
T ss_pred EEEEECcc-CCCCceEeeecCccccEEEcccccc
Confidence 99999998 6767777777777777766665543
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=3.2e-22 Score=160.04 Aligned_cols=224 Identities=12% Similarity=0.013 Sum_probs=155.3
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCC---cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCC
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD 85 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d 85 (270)
..+.+.+|...|.+++|+|+|++|++++.++ .|++||+.+++.. .+..+. ..+.+++|+| +|+.|+ +++.+
T Consensus 170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~--~~~~~~~~sp--dg~~la~~~~~~ 244 (415)
T 2hqs_A 170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFP--RHNGAPAFSP--DGSKLAFALSKT 244 (415)
T ss_dssp SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCS--SCEEEEEECT--TSSEEEEEECTT
T ss_pred CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCC--CcccCEEEcC--CCCEEEEEEecC
Confidence 4567788999999999999999999999885 9999999988775 455555 5699999999 999887 67666
Q ss_pred Cc--EEEEEccCCccCCCCccceecccceEEEEeeccCCcccee--c--CCCCceE--EEeccCceeeeccCCCCC--eE
Q 024245 86 GT--VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK--Q--ANEPKDC--YEREVGETVDTDSLCDSK--DD 155 (270)
Q Consensus 86 ~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~--~~~~~~~~~~~~~~~~~~--~~ 155 (270)
+. |.+||+.+++.. .+..+....... .+.+....+ . ..+...+ |++..++.......+... ++
T Consensus 245 g~~~i~~~d~~~~~~~-----~l~~~~~~~~~~--~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 317 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIR-----QVTDGRSNNTEP--TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDAD 317 (415)
T ss_dssp SSCEEEEEETTTCCEE-----ECCCCSSCEEEE--EECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEE
T ss_pred CCceEEEEECCCCCEE-----eCcCCCCcccce--EECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeE
Confidence 65 999999887642 222222222222 333333211 1 1232244 466555533322222222 89
Q ss_pred ecCCCCeEEEEecCC--CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC--
Q 024245 156 VPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-- 231 (270)
Q Consensus 156 ~s~~~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg-- 231 (270)
|+|+|++++++ +.. +..|++||+.+++.. .+. .+ ..+.++. |+|+ |+ +|++++.++
T Consensus 318 ~spdG~~l~~~-~~~~g~~~i~~~d~~~~~~~-~l~--------~~-----~~~~~~~-~spd---g~-~l~~~s~~~~~ 377 (415)
T 2hqs_A 318 VSSDGKFMVMV-SSNGGQQHIAKQDLATGGVQ-VLS--------ST-----FLDETPS-LAPN---GT-MVIYSSSQGMG 377 (415)
T ss_dssp ECTTSSEEEEE-EECSSCEEEEEEETTTCCEE-ECC--------CS-----SSCEEEE-ECTT---SS-EEEEEEEETTE
T ss_pred ECCCCCEEEEE-ECcCCceEEEEEECCCCCEE-Eec--------CC-----CCcCCeE-EcCC---CC-EEEEEEcCCCc
Confidence 99999977654 333 358999999988763 444 23 1466676 9994 55 777777766
Q ss_pred -cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 232 -SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 232 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
.|++||+. +.....+..|.+.|.+++|+|.-.+-
T Consensus 378 ~~l~~~d~~--g~~~~~l~~~~~~v~~~~~~~~~~~~ 412 (415)
T 2hqs_A 378 SVLNLVSTD--GRFKARLPATDGQVKFPAWSPYLHHH 412 (415)
T ss_dssp EEEEEEETT--SCCEEECCCSSSEEEEEEECCCCCCC
T ss_pred cEEEEEECC--CCcEEEeeCCCCCCcCCccccccccc
Confidence 79999987 56678888999999999999987653
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=3e-22 Score=152.63 Aligned_cols=225 Identities=12% Similarity=0.012 Sum_probs=149.3
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe--CCCcE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG--RDGTV 88 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~d~~i 88 (270)
..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+.. ..+.+++|+| ++++|++++ .++..
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~sp--dg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT-ICNNDHGISP--DGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC-CBCSCCEECT--TSSEEEEEECTTTSSC
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc-ccccceEECC--CCCEEEEEEeCCCCcc
Confidence 35667889999999999999999987 78999999998 877766655432 5588999999 999999888 44556
Q ss_pred EEEEcc--CCccCCCCccceecccceEEEEeeccCCccc----eecCCCCceEEEeccCceeeeccCCCCC----eEecC
Q 024245 89 KCWDIE--NGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN----AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA 158 (270)
Q Consensus 89 ~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~ 158 (270)
.+|.++ ++.. ..+..... ... +.+.+... .........+|++.........+..+.. ++|+|
T Consensus 111 ~l~~~~~~~~~~-----~~~~~~~~-~~~--~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~ 182 (297)
T 2ojh_A 111 AIYLLPSTGGTP-----RLMTKNLP-SYW--HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP 182 (297)
T ss_dssp EEEEEETTCCCC-----EECCSSSS-EEE--EEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECT
T ss_pred eEEEEECCCCce-----EEeecCCC-ccc--eEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECC
Confidence 666554 4332 11211111 222 22233222 1222344466775433222223333332 89999
Q ss_pred CCCeEEEEecCCCceEEEEeCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC-------
Q 024245 159 EGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED------- 230 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d------- 230 (270)
+++.+++ ++..++.++||++. .+.....+. .| ...+..+. |+|+ |+ +|++++.+
T Consensus 183 dg~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~--------~~----~~~~~~~~-~s~d---g~-~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 183 DGRWIYF-NSSRTGQMQIWRVRVDGSSVERIT--------DS----AYGDWFPH-PSPS---GD-KVVFVSYDADVFDHP 244 (297)
T ss_dssp TSSEEEE-EECTTSSCEEEEEETTSSCEEECC--------CC----SEEEEEEE-ECTT---SS-EEEEEEEETTCCSCC
T ss_pred CCCEEEE-EecCCCCccEEEECCCCCCcEEEe--------cC----CcccCCeE-ECCC---CC-EEEEEEcCCCCCccc
Confidence 9987765 45457889999886 455555665 33 24566777 9995 55 77777655
Q ss_pred ----CcEEEEEcCCCCcc--eeeeeccCCCeeEEEeecCCCce
Q 024245 231 ----GSILVWDIRNPGIP--LTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 231 ----g~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+.|++||+.+ ++. +..+.+|...+.+++|+|||++|
T Consensus 245 ~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l 286 (297)
T 2ojh_A 245 RDLDVRVQLMDMDG-GNVETLFDLFGGQGTMNSPNWSPDGDEF 286 (297)
T ss_dssp SSEEEEEEEEETTS-CSCEEEEEEEESTTTSCSCCBCTTSSEE
T ss_pred ccCceEEEEEecCC-CCceeeeccCCCCcccccceECCCCCEE
Confidence 5699999987 554 44445788899999999999876
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=2.3e-21 Score=159.75 Aligned_cols=237 Identities=11% Similarity=-0.005 Sum_probs=159.5
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeC--CCCceeEEEeecCCCcceEEEEEeeC--CCCCEEEEEe-
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPS--IGLNKVISQG- 83 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~- 83 (270)
+++.++..+.. +.+++|+|+|++|++++.|+.|.+||+ .+++.+..+... ..+..++|+|. .+|++|++++
T Consensus 170 ~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g---~~p~~va~sp~~~~dg~~l~v~~~ 245 (543)
T 1nir_A 170 KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG---IEARSVESSKFKGYEDRYTIAGAY 245 (543)
T ss_dssp CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC---SEEEEEEECCSTTCTTTEEEEEEE
T ss_pred eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC---CCcceEEeCCCcCCCCCEEEEEEc
Confidence 55666763323 899999999999999999999999999 888888888754 44799999971 1467888777
Q ss_pred CCCcEEEEEccCCccCCCCccceeccc----------c-eEEEEeecc--CCccceecCCCCceEEEeccCceeee-cc-
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNS----------Y-HFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDT-DS- 148 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 148 (270)
.+++|.+||..+++.+. .+.... . ....+.... ..........+.+.+|+....+.+.. .+
T Consensus 246 ~~~~v~v~D~~t~~~~~----~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~ 321 (543)
T 1nir_A 246 WPPQFAIMDGETLEPKQ----IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 321 (543)
T ss_dssp ESSEEEEEETTTCCEEE----EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred cCCeEEEEeccccccce----eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence 58999999998886544 222210 1 111222221 11112222344555677766543321 11
Q ss_pred CCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245 149 LCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (270)
Q Consensus 149 ~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (270)
.+... ++|+|+|+++++ ++..+++|.+||+.+++++..+.. + ..+..+....+ ++|+ .++ ++++
T Consensus 322 ~~~~~~~~~~spdg~~l~v-a~~~~~~v~v~D~~tg~l~~~i~~-------g-~~ph~g~g~~~--~~p~--~g~-~~~s 387 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMT-AANNSNKVAVIDSKDRRLSALVDV-------G-KTPHPGRGANF--VHPK--YGP-VWST 387 (543)
T ss_dssp CCSSCCCEEECTTSCEEEE-EEGGGTEEEEEETTTTEEEEEEEC-------S-SSBCCTTCEEE--EETT--TEE-EEEE
T ss_pred cCcCccCceECCCCCEEEE-EecCCCeEEEEECCCCeEEEeecc-------C-CCCCCCCCccc--CCCC--Ccc-EEEe
Confidence 11111 899999998876 444578999999999998888873 1 11111111111 3563 354 7777
Q ss_pred ec-CCCcEEEEEcCCC------CcceeeeeccCCCeeEEEeecCCCce
Q 024245 227 GY-EDGSILVWDIRNP------GIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 227 ~~-~dg~i~vwd~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+. .|++|.+||+.+. .++++++.+|...+..++|+|||++|
T Consensus 388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l 435 (543)
T 1nir_A 388 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL 435 (543)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE
T ss_pred ccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE
Confidence 75 6899999999862 57889999998889999999999875
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2e-20 Score=145.19 Aligned_cols=230 Identities=7% Similarity=0.008 Sum_probs=148.6
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEecC-CCcEEEEeCCCCce-eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
+.+..+..+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+. .+..+++|+| ++++|+++..++
T Consensus 31 ~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~--dg~~l~~~~~~~ 105 (331)
T 3u4y_A 31 EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ--SSMADVDITP--DDQFAVTVTGLN 105 (331)
T ss_dssp CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS--SCCCCEEECT--TSSEEEECCCSS
T ss_pred ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC--CCccceEECC--CCCEEEEecCCC
Confidence 4455555566667 9999999996665554 88999999999887 66666665 3455599999 999998555553
Q ss_pred ---cEEEEEccCCccCCCCccceecccceEEEEeeccCC--ccceecCCCC-ceEEEeccCcee----eeccC-CCCC--
Q 024245 87 ---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEP-KDCYEREVGETV----DTDSL-CDSK-- 153 (270)
Q Consensus 87 ---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~----~~~~~-~~~~-- 153 (270)
.|.+||+.+++... .+..... ...+.+.... .......... ..+|++.....+ ..... +...
T Consensus 106 ~~~~i~v~d~~~~~~~~----~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 180 (331)
T 3u4y_A 106 HPFNMQSYSFLKNKFIS----TIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFN 180 (331)
T ss_dssp SSCEEEEEETTTTEEEE----EEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEE
T ss_pred CcccEEEEECCCCCeEE----EEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccc
Confidence 89999999886543 2222211 1222332222 2222223344 667777643322 11111 1122
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcce---eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d 230 (270)
++|+|+|+++++ ++..++.|++||+.+++. +..+.. ...+..++ |+| +|+.++++...+
T Consensus 181 ~~~spdg~~l~v-~~~~~~~v~v~d~~~~~~~~~~~~~~~-------------~~~~~~~~-~sp---dg~~l~v~~~~~ 242 (331)
T 3u4y_A 181 ITFTPDGNFAFV-ANLIGNSIGILETQNPENITLLNAVGT-------------NNLPGTIV-VSR---DGSTVYVLTEST 242 (331)
T ss_dssp EEECTTSSEEEE-EETTTTEEEEEECSSTTSCEEEEEEEC-------------SSCCCCEE-ECT---TSSEEEEECSSE
T ss_pred eEECCCCCEEEE-EeCCCCeEEEEECCCCcccceeeeccC-------------CCCCceEE-ECC---CCCEEEEEEcCC
Confidence 999999987776 455689999999999888 666662 23455676 999 465344555568
Q ss_pred CcEEEEEcCCCCcc--eeeeecc----CC---CeeEEEeecCCCce
Q 024245 231 GSILVWDIRNPGIP--LTAMKVH----LE---PGLECSMWRNPITM 267 (270)
Q Consensus 231 g~i~vwd~~~~~~~--~~~~~~~----~~---~v~~~~~s~~g~~l 267 (270)
+.|.+||+.+ ++. +..+..+ .. ....++|+|||++|
T Consensus 243 ~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 287 (331)
T 3u4y_A 243 VDVFNFNQLS-GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL 287 (331)
T ss_dssp EEEEEEETTT-TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred CEEEEEECCC-CceeeecccccccccCCCCcccccceEECCCCCEE
Confidence 8999999998 555 3333322 22 23568999999865
No 131
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=4.1e-21 Score=154.26 Aligned_cols=186 Identities=11% Similarity=0.064 Sum_probs=129.9
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----------ceeEEE-----eecCCCcceEEEEEeeCCCCCEEE--
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----------RTVSSS-----WVHSAAHGIVSVATGPSIGLNKVI-- 80 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~-- 80 (270)
...++.+++++++.++++++.|+ ++||+.... ..+... ..+. ..|.+++|+| ++++|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~sp--dg~~lav~ 110 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK--FPIHHLALSC--DNLTLSAC 110 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS--SCEEEEEECT--TSCEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC--CcccEEEEcC--CCCEEEEE
Confidence 44689999999999999999988 999876421 011100 1122 5699999999 999999
Q ss_pred --EEeCCCcEEEEEccCCccCC----CCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-
Q 024245 81 --SQGRDGTVKCWDIENGGLSS----NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK- 153 (270)
Q Consensus 81 --s~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (270)
+++.|+.|++||+++..... .++..+. .+.+|..
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~h~~~ 151 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK---------------------------------------LLKDAGGM 151 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE---------------------------------------CCCSGGGS
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeee---------------------------------------ccCCCCCc
Confidence 78899999999997641100 0000000 1112222
Q ss_pred ---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245 154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (270)
Q Consensus 154 ---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d 230 (270)
++|+|+...+++ +++.||+|++||++++..+.... +| ...+.+++ |+|+ |. +|++|+.|
T Consensus 152 V~~v~~~p~~~~~la-s~s~Dg~v~iwD~~~~~~~~~~~--------~~----~~~v~~v~-wspd---g~-~lasgs~d 213 (434)
T 2oit_A 152 VIDMKWNPTVPSMVA-VCLADGSIAVLQVTETVKVCATL--------PS----TVAVTSVC-WSPK---GK-QLAVGKQN 213 (434)
T ss_dssp EEEEEECSSCTTEEE-EEETTSCEEEEEESSSEEEEEEE--------CG----GGCEEEEE-ECTT---SS-CEEEEETT
T ss_pred eEEEEECCCCCCEEE-EEECCCeEEEEEcCCCcceeecc--------CC----CCceeEEE-EcCC---CC-EEEEEcCC
Confidence 679998545555 56679999999999887655554 44 34678888 9995 55 89999999
Q ss_pred CcEEEEEcCCCCcceeeeecc-------CCCeeEEEeecCCCce
Q 024245 231 GSILVWDIRNPGIPLTAMKVH-------LEPGLECSMWRNPITM 267 (270)
Q Consensus 231 g~i~vwd~~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l 267 (270)
|.|++||++ ++....+..| ...|.+++|++++.++
T Consensus 214 g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 214 GTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA 255 (434)
T ss_dssp SCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred CcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence 999999998 3444444433 2379999999998887
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.86 E-value=1.5e-20 Score=150.41 Aligned_cols=220 Identities=10% Similarity=-0.001 Sum_probs=146.8
Q ss_pred cccccccccEEEEEEeC--------------CCCEEEEecCC------CcEEEEeCCCCceeEEEeecCCCcceEEEEEe
Q 024245 12 AVLRGHRASVTDVCFHQ--------------TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATG 71 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~--------------~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 71 (270)
..+.+|...+..+++++ .+..++.++.+ +.|++||+.. .....+..|. ..|.+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~--~~v~~~~~S 187 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSP--QPLMSPAWS 187 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEES--SCEEEEEEC
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCC--CcceeeEEc
Confidence 44777877777777664 15566665554 7999999974 5566777777 669999999
Q ss_pred eCCCCCEEEEEeCCC---cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceec----CCCC--ceEEEeccCc
Q 024245 72 PSIGLNKVISQGRDG---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ----ANEP--KDCYEREVGE 142 (270)
Q Consensus 72 ~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~ 142 (270)
| +|++|++++.++ .|++||+.+++.. .+..+..... .+.+++....+. ..+. ...|++.+++
T Consensus 188 p--dg~~la~~s~~~~~~~i~~~d~~tg~~~-----~l~~~~~~~~--~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 188 P--DGSKLAYVTFESGRSALVIQTLANGAVR-----QVASFPRHNG--APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp T--TSSEEEEEECTTSSCEEEEEETTTCCEE-----EEECCSSCEE--EEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred C--CCCEEEEEEecCCCcEEEEEECCCCcEE-----EeecCCCccc--CEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 9 999999999875 9999999988643 2222222222 233333332211 1222 4556777665
Q ss_pred eeeeccCCCCC----eEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC
Q 024245 143 TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS 216 (270)
Q Consensus 143 ~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~ 216 (270)
.. .+..+.. ++|+|+|+.++++ +..++ .|.+||+.+++.. .+. .+ ...+..+. |+|+
T Consensus 259 ~~--~l~~~~~~~~~~~~spdg~~l~~~-s~~~g~~~i~~~d~~~~~~~-~l~--------~~----~~~~~~~~-~spd 321 (415)
T 2hqs_A 259 IR--QVTDGRSNNTEPTWFPDSQNLAFT-SDQAGRPQVYKVNINGGAPQ-RIT--------WE----GSQNQDAD-VSSD 321 (415)
T ss_dssp EE--ECCCCSSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCCE-ECC--------CS----SSEEEEEE-ECTT
T ss_pred EE--eCcCCCCcccceEECCCCCEEEEE-ECCCCCcEEEEEECCCCCEE-EEe--------cC----CCcccCeE-ECCC
Confidence 42 3344443 8999999877764 33345 6888899877643 333 22 23566777 9994
Q ss_pred CCCCceEEEEecCC---CcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 217 KSQGFVNVLAGYED---GSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 217 ~~~g~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
|+ +|++++.+ ..|++||+.+ ++. ..+..+. .+.+++|+|||++|
T Consensus 322 ---G~-~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~~~~~~~spdg~~l 368 (415)
T 2hqs_A 322 ---GK-FMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-LDETPSLAPNGTMV 368 (415)
T ss_dssp ---SS-EEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-SCEEEEECTTSSEE
T ss_pred ---CC-EEEEEECcCCceEEEEEECCC-CCE-EEecCCC-CcCCeEEcCCCCEE
Confidence 55 67666653 5899999997 554 4455554 89999999999876
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=1.3e-19 Score=141.05 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=141.2
Q ss_pred cccccEEEEEEeCCCCEEEEecCC-CcEEEEeCC--CCce--eEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTG-GELRIWDTV--QHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVK 89 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~d-g~i~vwd~~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~ 89 (270)
.|...+.+++|+|+|++|++++.+ +.|.+|++. +++. +..+..+ ..+..++|+| ++++|++++ .++.|.
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~~~~~~~~~i~ 109 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP---GSLTHISTDH--QGQFVFVGSYNAGNVS 109 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS---SCCSEEEECT--TSSEEEEEETTTTEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC---CCCcEEEEcC--CCCEEEEEecCCCeEE
Confidence 467789999999999988888776 999999997 5543 3344433 3588999999 988876665 488999
Q ss_pred EEEccCCccCCCCccceeccc-ceEEEEeeccCCccceecCCCCceEEEecc-Cceee-----ecc-CCCCC--eEecCC
Q 024245 90 CWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVD-----TDS-LCDSK--DDVPAE 159 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~-~~~~~--~~~s~~ 159 (270)
+||+..+... .....+.... .....++.................+|++.. ++... ... .+... ++|+|+
T Consensus 110 ~~d~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 110 VTRLEDGLPV-GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 188 (343)
T ss_dssp EEEEETTEEE-EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred EEECCCCccc-cccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence 9999532211 0111222111 111112222211111121345567788876 43321 111 12111 899999
Q ss_pred CCeEEEEecCCCceEEEEeCCC--cce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~--~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v 235 (270)
++++++ ++..++.|.+||+.. ++. ...+... ..++. ....+..++ |+|+ |+.+++++..++.|.+
T Consensus 189 g~~l~~-~~~~~~~i~~~~~~~~~g~~~~~~~~~~~----~~~~~--~~~~~~~i~-~s~d---g~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 189 EQYAYC-VNELNSSVDVWELKDPHGNIECVQTLDMM----PENFS--DTRWAADIH-ITPD---GRHLYACDRTASLITV 257 (343)
T ss_dssp SSEEEE-EETTTTEEEEEESSCTTSCCEEEEEEECS----CTTCC--SCCCEEEEE-ECTT---SSEEEEEETTTTEEEE
T ss_pred CCEEEE-EeCCCCEEEEEEecCCCCcEEEEeecccc----Ccccc--ccCCccceE-ECCC---CCEEEEEecCCCEEEE
Confidence 987776 455689999999953 332 2222200 00111 122445676 9994 5535557778999999
Q ss_pred EEcCCC---CcceeeeeccCCCeeEEEeecCCCce
Q 024245 236 WDIRNP---GIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 236 wd~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
||+... .+.+..+..+.. +.+++|+|+|++|
T Consensus 258 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l 291 (343)
T 1ri6_A 258 FSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYL 291 (343)
T ss_dssp EEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEE
T ss_pred EEEcCCCCceEEeeeecCCCc-cceEEECCCCCEE
Confidence 999831 234445554444 8999999999854
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=3.7e-19 Score=139.12 Aligned_cols=221 Identities=11% Similarity=0.077 Sum_probs=151.4
Q ss_pred ccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCCCc-------ceEEEEEeeCCCCCEEEEEe--CCCcE
Q 024245 19 ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAH-------GIVSVATGPSIGLNKVISQG--RDGTV 88 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~l~s~~--~d~~i 88 (270)
..+..++|+|+|+++ ++...++.|.+||..+++.+..+..+.... .+.+++|+| +++++++++ .++.|
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVI 166 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceE
Confidence 457789999999854 555668999999999999888877643211 268899999 988877665 47899
Q ss_pred EEEEccCCccCCCCcccee--cccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC---CCCC----eEecCC
Q 024245 89 KCWDIENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL---CDSK----DDVPAE 159 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~s~~ 159 (270)
.+||+.+++... .+. ........++...... ......+....|+..+++....... ++.. ++|+|+
T Consensus 167 ~~~d~~~~~~~~----~~~~~~~~~~~~~~s~dg~~l-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 167 WVVDGGNIKLKT----AIQNTGKMSTGLALDSEGKRL-YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp EEEETTTTEEEE----EECCCCTTCCCCEEETTTTEE-EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred EEEcCCCCceEE----EecCCCCccceEEECCCCCEE-EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence 999999886543 222 1111222222222111 1122234455678877766544332 1222 899999
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
++.+++ +...++.|.+||+.+++.+..+.. +. ...+. |+|+ |+.++++...++.|.+||+.
T Consensus 242 g~~l~~-~~~~~~~v~~~d~~~~~~~~~~~~-------~~-------~~~~~-~s~d---g~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 242 RQRAFI-TDSKAAEVLVVDTRNGNILAKVAA-------PE-------SLAVL-FNPA---RNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp TTEEEE-EESSSSEEEEEETTTCCEEEEEEC-------SS-------CCCEE-EETT---TTEEEEEETTTTEEEEEETT
T ss_pred CCEEEE-EeCCCCEEEEEECCCCcEEEEEEc-------CC-------CceEE-ECCC---CCEEEEEECCCCeEEEEECC
Confidence 998776 445579999999999998888773 11 13455 9984 55356666689999999999
Q ss_pred CCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 240 NPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+ ++.+..+... ..+.+++|+|||++|
T Consensus 303 ~-~~~~~~~~~~-~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 303 S-YKVVKTFDTP-THPNSLALSADGKTL 328 (353)
T ss_dssp T-TEEEEEEECC-SEEEEEEECTTSCEE
T ss_pred C-CeEEEEEecC-CCCCeEEEcCCCCEE
Confidence 8 7777777753 478999999999854
No 135
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=2e-20 Score=150.24 Aligned_cols=163 Identities=9% Similarity=0.060 Sum_probs=115.7
Q ss_pred ccccEEEEEEeCCCCEEE----EecCCCcEEEEeCCCC--------ce---eEEEeecCCCcceEEEEEeeCCC-CCEEE
Q 024245 17 HRASVTDVCFHQTKPILF----AGTTGGELRIWDTVQH--------RT---VSSSWVHSAAHGIVSVATGPSIG-LNKVI 80 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~----s~~~dg~i~vwd~~~~--------~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~l~ 80 (270)
|...|++++|+|+|++|+ +|+.|+.|+|||+.++ +. +..+.+|. ..|.+++|+| + +++|+
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~~p--~~~~~la 166 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG--GMVIDMKWNP--TVPSMVA 166 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG--GSEEEEEECS--SCTTEEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC--CceEEEEECC--CCCCEEE
Confidence 567899999999999999 8999999999998754 22 34455566 6699999999 6 78999
Q ss_pred EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 160 (270)
+++.||+|++||++++.... ....+...... ++|+|+|
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~----~~~~~~~~v~~--------------------------------------v~wspdg 204 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVC----ATLPSTVAVTS--------------------------------------VCWSPKG 204 (434)
T ss_dssp EEETTSCEEEEEESSSEEEE----EEECGGGCEEE--------------------------------------EEECTTS
T ss_pred EEECCCeEEEEEcCCCccee----eccCCCCceeE--------------------------------------EEEcCCC
Confidence 99999999999998763211 11111111110 5699999
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCccc---CCCceeeeeeecCCCCCCCceEEEEecCCCc-----
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS---KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS----- 232 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~---~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~----- 232 (270)
++++ +|+.||.|++||++ ++....+. .|.. .....+.++. |+++ +.++++....||.
T Consensus 205 ~~la--sgs~dg~v~iwd~~-~~~~~~~~--------~~~~~~~~~~~~v~~v~-w~~~---~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 205 KQLA--VGKQNGTVVQYLPT-LQEKKVIP--------CPPFYESDHPVRVLDVL-WIGT---YVFAIVYAAADGTLETSP 269 (434)
T ss_dssp SCEE--EEETTSCEEEECTT-CCEEEEEC--------CCTTCCTTSCEEEEEEE-EEET---TEEEEEEEETTCCSSSCC
T ss_pred CEEE--EEcCCCcEEEEccC-Cccccccc--------CCcccCCCCceeEEEEE-EecC---ceEEEEEccCCCccCCCC
Confidence 8665 46679999999998 66666665 2321 1123678888 9873 4423344445543
Q ss_pred -EEEEEcCC
Q 024245 233 -ILVWDIRN 240 (270)
Q Consensus 233 -i~vwd~~~ 240 (270)
+++||++.
T Consensus 270 ~v~i~~l~~ 278 (434)
T 2oit_A 270 DVVMALLPK 278 (434)
T ss_dssp EEEEEECCC
T ss_pred ceEEEEecc
Confidence 89999986
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=9.8e-20 Score=156.01 Aligned_cols=223 Identities=6% Similarity=-0.078 Sum_probs=150.8
Q ss_pred cccEEEEEEeCCCCEEEEecC-CC-----cEEEEeCCCCceeEEEeecCCC----------------------cceEEEE
Q 024245 18 RASVTDVCFHQTKPILFAGTT-GG-----ELRIWDTVQHRTVSSSWVHSAA----------------------HGIVSVA 69 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~-dg-----~i~vwd~~~~~~~~~~~~~~~~----------------------~~v~~~~ 69 (270)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+... ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 8999999999887777654421 2378999
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEccCC---ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeee
Q 024245 70 TGPSIGLNKVISQGRDGTVKCWDIENG---GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT 146 (270)
Q Consensus 70 ~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (270)
|+| +|++|++++. +.|.+||+.++ ... .+..+........+................+|++..++....
T Consensus 116 ~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~-----~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 116 WSP--DAQRLLFPLG-GELYLYDLKQEGKAAVR-----QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ECT--TSSEEEEEET-TEEEEEESSSCSTTSCC-----BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred ECC--CCCEEEEEeC-CcEEEEECCCCCcceEE-----EcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence 999 9999998886 89999999987 432 222222222222222222222223334566678777665443
Q ss_pred ccCCC-------------------CCeEecCCCCeEEEEecCCCc---------------------------------eE
Q 024245 147 DSLCD-------------------SKDDVPAEGPKYMAVAGEQLS---------------------------------EV 174 (270)
Q Consensus 147 ~~~~~-------------------~~~~~s~~~~~~~~~~~~~d~---------------------------------~i 174 (270)
...+. ..++|||||+.++.++. |+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~--d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI--DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE--ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE--cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 33322 22899999998775432 22 78
Q ss_pred EEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-----CCCcEEEEEcCCCCcceeee
Q 024245 175 EIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-----EDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 175 ~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~ 248 (270)
++||+.+ ++...... + ......+..+. | |+ |+ +|++++ .+..|++||+.+ ++....+
T Consensus 266 ~~~d~~~~~~~~~~~~--------~--~~~~~~~~~~~-~-pD---g~-~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~ 328 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDL--------G--KEQDIYLARVN-W-RD---PQ-HLSFQRQSRDQKKLDLVEVTLAS-NQQRVLA 328 (741)
T ss_dssp EEECSSTTCCCEEECC--------C--SCSSEEEEEEE-E-EE---TT-EEEEEEEETTSSEEEEEEEETTT-CCEEEEE
T ss_pred EEEECCCCCceEEecC--------C--CCcceEEEEEE-e-CC---CC-EEEEEEecccCCeEEEEEEECCC-CceEEEE
Confidence 8999988 77544332 1 01245677887 9 94 55 666544 357899999998 7766666
Q ss_pred eccCC----CeeEEEeecCCCce
Q 024245 249 KVHLE----PGLECSMWRNPITM 267 (270)
Q Consensus 249 ~~~~~----~v~~~~~s~~g~~l 267 (270)
..+.. .+.+++|+|||+++
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEE
T ss_pred EcCCCCcCCcCCceEECCCCeEE
Confidence 65543 45789999999854
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=1.9e-18 Score=135.16 Aligned_cols=224 Identities=11% Similarity=0.059 Sum_probs=153.1
Q ss_pred ccccEEEEEEeCCCCEEEEecC-------CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcE
Q 024245 17 HRASVTDVCFHQTKPILFAGTT-------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTV 88 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i 88 (270)
....+..++|+|+++++++++. ++.|.+||..+++.+..+... ..+..++|+| ++++++ +...++.|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---LKPFGATINN--TTQTLWFGNTVNSAV 113 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---SCCCSEEEET--TTTEEEEEETTTTEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---CCcceEEECC--CCCEEEEEecCCCEE
Confidence 4567889999999998887764 568999999999988888764 3378899999 888555 55668999
Q ss_pred EEEEccCCccCCCCccceeccc---------ceEEEEeeccCCccceecC---CCCceEEEeccCceeeecc-CCCCC--
Q 024245 89 KCWDIENGGLSSNPSLTIKTNS---------YHFCKLSLVKEPYANAKQA---NEPKDCYEREVGETVDTDS-LCDSK-- 153 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~-- 153 (270)
.+||..+++... .+.... .....+.+........... ......|+..+++...... .+...
T Consensus 114 ~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 114 TAIDAKTGEVKG----RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG 189 (353)
T ss_dssp EEEETTTCCEEE----EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred EEEeCCCCeeEE----EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence 999999887543 222211 1122233332222222222 3446678887776655433 23222
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i 233 (270)
++|+|+++.++++ +.++.|.+||+.+++.+..+.. ...........++ |+|+ |+.++++...++.|
T Consensus 190 ~~~s~dg~~l~~~--~~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~-~s~d---g~~l~~~~~~~~~v 255 (353)
T 3vgz_A 190 LALDSEGKRLYTT--NADGELITIDTADNKILSRKKL--------LDDGKEHFFINIS-LDTA---RQRAFITDSKAAEV 255 (353)
T ss_dssp CEEETTTTEEEEE--CTTSEEEEEETTTTEEEEEEEC--------CCSSSCCCEEEEE-EETT---TTEEEEEESSSSEE
T ss_pred EEECCCCCEEEEE--cCCCeEEEEECCCCeEEEEEEc--------CCCCCCcccceEE-ECCC---CCEEEEEeCCCCEE
Confidence 9999999987753 3479999999999998877762 1111233556677 9985 54345555566999
Q ss_pred EEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245 234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
.+||+.+ ++.+..+.... ...++|+|+|++
T Consensus 256 ~~~d~~~-~~~~~~~~~~~--~~~~~~s~dg~~ 285 (353)
T 3vgz_A 256 LVVDTRN-GNILAKVAAPE--SLAVLFNPARNE 285 (353)
T ss_dssp EEEETTT-CCEEEEEECSS--CCCEEEETTTTE
T ss_pred EEEECCC-CcEEEEEEcCC--CceEEECCCCCE
Confidence 9999998 77777776533 367999999984
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=3.1e-19 Score=139.51 Aligned_cols=234 Identities=13% Similarity=0.127 Sum_probs=142.5
Q ss_pred cccccEEEEEEeCCCCEEEEecC---CCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVK 89 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~ 89 (270)
.+...+..++|+|+|+ |++++. ++.|++|++.+++ .+..+..+. ..+..++|+| ++++|++++ .++.|.
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~--~~p~~~a~sp--dg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG--TPPAYVAVDE--ARQLVYSANYHKGTAE 111 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES--CCCSEEEEET--TTTEEEEEETTTTEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC--CCCEEEEECC--CCCEEEEEeCCCCEEE
Confidence 3556778899999998 555443 6899999997765 333444454 5588999999 999888877 789999
Q ss_pred EEEccC-CccCCCCccceeccc---------ceEEEEeeccCCc-cceecCCCCceEEEec-cCceeee---cc-CCCCC
Q 024245 90 CWDIEN-GGLSSNPSLTIKTNS---------YHFCKLSLVKEPY-ANAKQANEPKDCYERE-VGETVDT---DS-LCDSK 153 (270)
Q Consensus 90 ~wd~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~ 153 (270)
+|++.. +.... +..+.... .....+.+..... ...........+|++. .++.... .. .+...
T Consensus 112 v~~~~~~g~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p 189 (347)
T 3hfq_A 112 VMKIAADGALTL--TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP 189 (347)
T ss_dssp EEEECTTSCEEE--EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred EEEeCCCCCeee--cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence 999963 22211 11111110 0122222322222 1122223446678887 3332211 11 11111
Q ss_pred --eEecCCCCeEEEEecCCCceEEEEeCCC--cce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245 154 --DDVPAEGPKYMAVAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 154 --~~~s~~~~~~~~~~~~~d~~i~iwd~~~--~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
++|+|+|+++++ ++..++.|.+|++.. ++. +..+... ... ......+..++ |+| ||+.++++.
T Consensus 190 ~~~~~spdg~~l~v-~~~~~~~v~v~~~~~~~g~~~~~~~~~~~-----~~~-~~~~~~~~~i~-~sp---dG~~l~v~~ 258 (347)
T 3hfq_A 190 RHLVFSPDGQYAFL-AGELSSQIASLKYDTQTGAFTQLGIVKTI-----PAD-YTAHNGAAAIR-LSH---DGHFLYVSN 258 (347)
T ss_dssp EEEEECTTSSEEEE-EETTTTEEEEEEEETTTTEEEEEEEEESS-----CTT-CCSCCEEEEEE-ECT---TSCEEEEEE
T ss_pred ceEEECCCCCEEEE-EeCCCCEEEEEEecCCCCceEEeeeeeec-----CCC-CCCCCcceeEE-ECC---CCCEEEEEe
Confidence 899999987776 455689999999874 442 2222210 000 00113466777 999 466344677
Q ss_pred cCCCcEEEEEcCCCC--cceeeeeccCCCeeEEEeecCCCce
Q 024245 228 YEDGSILVWDIRNPG--IPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 228 ~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
..++.|.+||+...+ +.+..+..+...+.+++|+|||++|
T Consensus 259 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l 300 (347)
T 3hfq_A 259 RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFV 300 (347)
T ss_dssp ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEE
Confidence 779999999997422 4555666666778999999999865
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.84 E-value=1.2e-18 Score=135.11 Aligned_cols=219 Identities=11% Similarity=0.078 Sum_probs=140.9
Q ss_pred EEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CCcEEEEEccCCcc-CCC
Q 024245 25 CFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKCWDIENGGL-SSN 101 (270)
Q Consensus 25 ~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~-~~~ 101 (270)
.|.+++. .+++++.++.|.+||+.+++.+..+..+. ..+ .++|+| +++++++++. ++.|.+||+.+++. ..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~- 77 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGY--DFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVV- 77 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC--CEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEE-
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccC--Ccc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEE-
Confidence 4555444 57788889999999999999888877654 446 999999 9887766555 88999999998864 22
Q ss_pred CccceecccceEEEEeeccCCccceecCCC----CceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEecCCCce-E
Q 024245 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANE----PKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSE-V 174 (270)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~-i 174 (270)
.+.........+.+............. ...+|++..++.+.....+... ++|+|+|++++++. ..++. |
T Consensus 78 ---~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~i 153 (331)
T 3u4y_A 78 ---AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILID-RSSANTV 153 (331)
T ss_dssp ---EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEE-ETTTTEE
T ss_pred ---ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEe-cCCCceE
Confidence 222222111112222222222222222 5667888877765543333322 99999998877644 44567 9
Q ss_pred EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc---eeeeecc
Q 024245 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVH 251 (270)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~ 251 (270)
.+|++.....+..... .. .........+. |+|+ |+.+++++..++.|++||+.+ ++. +..+..
T Consensus 154 ~~~~~~~~g~~~~~~~-------~~-~~~~~~~~~~~-~spd---g~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~- 219 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQ-------EF-ISGGTRPFNIT-FTPD---GNFAFVANLIGNSIGILETQN-PENITLLNAVGT- 219 (331)
T ss_dssp EEEEECTTCCEEEEEE-------EE-ECSSSSEEEEE-ECTT---SSEEEEEETTTTEEEEEECSS-TTSCEEEEEEEC-
T ss_pred EEEEECCCCcEeecCC-------cc-ccCCCCccceE-ECCC---CCEEEEEeCCCCeEEEEECCC-CcccceeeeccC-
Confidence 9999875443221110 00 00122356676 9994 554566667799999999998 676 777764
Q ss_pred CCCeeEEEeecCCCce
Q 024245 252 LEPGLECSMWRNPITM 267 (270)
Q Consensus 252 ~~~v~~~~~s~~g~~l 267 (270)
...+..++|+|||++|
T Consensus 220 ~~~~~~~~~spdg~~l 235 (331)
T 3u4y_A 220 NNLPGTIVVSRDGSTV 235 (331)
T ss_dssp SSCCCCEEECTTSSEE
T ss_pred CCCCceEEECCCCCEE
Confidence 4678899999999854
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.84 E-value=1.3e-18 Score=143.47 Aligned_cols=236 Identities=8% Similarity=0.026 Sum_probs=161.2
Q ss_pred CcccccccccccEEEEEEeC----CCCEEEEecC-CCcEEEEeCCCCceeEEEeecC---------CCcceEEEEEeeCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQ----TKPILFAGTT-GGELRIWDTVQHRTVSSSWVHS---------AAHGIVSVATGPSI 74 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~ 74 (270)
+++.++. +...+..++|+| +|++|++++. +++|.|||..++++++.+..+. ....+.++.++|
T Consensus 213 ~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~-- 289 (543)
T 1nir_A 213 TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-- 289 (543)
T ss_dssp EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS--
T ss_pred cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC--
Confidence 4566666 455789999999 9999999885 8999999999999998886531 113589999999
Q ss_pred CCC-EEEEEeCCCcEEEEEccCCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC--
Q 024245 75 GLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-- 150 (270)
Q Consensus 75 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 150 (270)
++. ++++...++.|.+||+.+.+... +..+... ......++...............+.+||..+++.......+
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ 367 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 367 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSCE--EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcce--eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence 655 45677889999999998765322 1122211 11112222222222222233456777999888766543322
Q ss_pred -CCC--eE-ecCCCCeEEEEecCCCceEEEEeCCC-------cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245 151 -DSK--DD-VPAEGPKYMAVAGEQLSEVEIWDLNT-------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219 (270)
Q Consensus 151 -~~~--~~-~s~~~~~~~~~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~ 219 (270)
|.. .. ++|++..++++....|++|.+||+.+ .++++++. +|. .....+. |+|+
T Consensus 368 ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~--------~~g----~~~~~v~-~~pd--- 431 (543)
T 1nir_A 368 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ--------GQG----GGSLFIK-THPK--- 431 (543)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE--------CSC----SCCCCEE-CCTT---
T ss_pred CCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE--------cCC----CCceEEE-cCCC---
Confidence 433 33 46886666664433579999999998 78888888 553 2455676 9995
Q ss_pred CceEEEEec-------CCCcEEEEEcCCCCcce-eee--------eccCCCeeEEEeecCCCce
Q 024245 220 GFVNVLAGY-------EDGSILVWDIRNPGIPL-TAM--------KVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 220 g~~~l~~~~-------~dg~i~vwd~~~~~~~~-~~~--------~~~~~~v~~~~~s~~g~~l 267 (270)
++ +|++++ .+++|.+||+.+ .+.. ..+ ..+...+..++|+|||+.|
T Consensus 432 g~-~l~v~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~ 493 (543)
T 1nir_A 432 SS-HLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV 493 (543)
T ss_dssp CC-EEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEE
T ss_pred CC-cEEEecCCCCCcccCceEEEEECCC-CCCCeEEeechhhcccCCCCCceEeccCCCCCCEE
Confidence 55 888876 277999999999 5544 554 3456789999999999875
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=9e-20 Score=152.15 Aligned_cols=221 Identities=9% Similarity=-0.031 Sum_probs=148.1
Q ss_pred ccccEEEEEEeCCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEE
Q 024245 17 HRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWD 92 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~i~~wd 92 (270)
+..+|++++|+|||+.||+++. ||+++||++..++..+....+. ..+..++|+| + +.+++++. +...++|.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~--~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPI--NSVLDPHYGV--G-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCC--SEECEECTTC--S-EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccc--cccccccCCC--C-eEEEEeccCCCCcceEEEE
Confidence 3568999999999999999887 9999999997666554433332 3589999999 8 77777765 55667776
Q ss_pred ccC--CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCC
Q 024245 93 IEN--GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (270)
Q Consensus 93 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 170 (270)
+.. ..... .+.... ......++..+..............+|++.+++...........++|+|||+.++.++ .
T Consensus 95 ~~~~~~g~~~-~l~~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~--~ 169 (582)
T 3o4h_A 95 VNTSRPGEEQ-RLEAVK--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLG--F 169 (582)
T ss_dssp EETTSTTCCE-ECTTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEE--E
T ss_pred EeccCCCccc-cccCCC--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEE--E
Confidence 654 21111 111111 2223344444443333333444445888887764432221112389999999776432 2
Q ss_pred C----ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC--cEEEEEcCCCCcc
Q 024245 171 L----SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIP 244 (270)
Q Consensus 171 d----~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~ 244 (270)
+ +.|++||+.+++.. .+. +| ...+..++ |+| ||+ +|+++..++ .|++||+.+ +++
T Consensus 170 ~~~~~~~i~~~d~~~g~~~-~l~--------~~----~~~~~~~~-~Sp---DG~-~l~~~~~~~~~~i~~~d~~~-~~~ 230 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLR-VFD--------SG----EGSFSSAS-ISP---GMK-VTAGLETAREARLVTVDPRD-GSV 230 (582)
T ss_dssp EETTEEEEEEEETTTCCCE-EEC--------CS----SCEEEEEE-ECT---TSC-EEEEEECSSCEEEEEECTTT-CCE
T ss_pred cCCCCeEEEEEcCCCCCce-Eee--------cC----CCccccce-ECC---CCC-EEEEccCCCeeEEEEEcCCC-CcE
Confidence 4 67999999988765 455 34 34567777 999 466 788888888 899999998 666
Q ss_pred eeeeeccCCCeeEEE--------eecCCCce
Q 024245 245 LTAMKVHLEPGLECS--------MWRNPITM 267 (270)
Q Consensus 245 ~~~~~~~~~~v~~~~--------~s~~g~~l 267 (270)
. .+.+|...+.+++ |+|||.++
T Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp E-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred E-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence 5 7777877788888 99999543
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.83 E-value=6.6e-19 Score=150.90 Aligned_cols=225 Identities=12% Similarity=-0.016 Sum_probs=146.4
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
.|.+++|||||++|++++. +.|++||+.++. ....+..+. ..+..++|+| +|++|+.++ ++.|.+||+.+++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~--~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGE--GFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSS--SCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCC--cccccccCCC--CCCEEEEEe-CCcEEEEecCCCC
Confidence 4889999999999999886 899999999873 344555555 5599999999 999999887 4689999998876
Q ss_pred cCCCCccceeccc----------------ceEEEEeeccCCccceecCCC------------------------------
Q 024245 98 LSSNPSLTIKTNS----------------YHFCKLSLVKEPYANAKQANE------------------------------ 131 (270)
Q Consensus 98 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~------------------------------ 131 (270)
... +....... .....++.++.........+.
T Consensus 184 ~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 184 QMQ--LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp EEE--CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred EEE--eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 432 11111000 011222222222111111111
Q ss_pred --CceEEEecc-CceeeeccC-CCCC----eEecCCCCeEEEEec---CCCceEEEEeCCCcceeeeeccCcCCCCCCcc
Q 024245 132 --PKDCYEREV-GETVDTDSL-CDSK----DDVPAEGPKYMAVAG---EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS 200 (270)
Q Consensus 132 --~~~~~~~~~-~~~~~~~~~-~~~~----~~~s~~~~~~~~~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~ 200 (270)
...+|++.. ++....... .+.. ++| |||+.+++.+. ..+..|++||+.+++....+. .+.
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------~~~ 332 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH--------ETS 332 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE--------EEC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE--------cCC
Confidence 233456655 544332222 2333 899 99998876442 246789999999998776665 232
Q ss_pred cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEE-EeecCCCce
Q 024245 201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC-SMWRNPITM 267 (270)
Q Consensus 201 ~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l 267 (270)
......+..+. |+| ||+ ++++++.||.++||.+...+. ...+..+...|.++ .|+|||+.|
T Consensus 333 ~~~~~~~~~~~-~sp---dg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l 394 (741)
T 2ecf_A 333 PTWVPLHNSLR-FLD---DGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLA 394 (741)
T ss_dssp SSCCCCCSCCE-ECT---TSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEE
T ss_pred CCcCCcCCceE-ECC---CCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEE
Confidence 11111234566 999 466 889999999888887764355 77788788888887 599999765
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=1.5e-19 Score=154.51 Aligned_cols=228 Identities=8% Similarity=-0.019 Sum_probs=146.5
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCC-cceEEEEEeeCCCCCEEEEEeCC---------CcE
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGRD---------GTV 88 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~d---------~~i 88 (270)
..+.+++|+|||+++++ +.||.|++||+.+++....+..+... ..|.+++|+| +|++|++++.+ +.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccceeecceeeE
Confidence 34778999999997776 78999999999999888777665420 1489999999 99999988764 778
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccce--ecCCCCceEEEeccCceeeeccCCC---------------
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA--KQANEPKDCYEREVGETVDTDSLCD--------------- 151 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 151 (270)
.+||+.+++... +.....+.... ..+.+++.+.. ........+|++..++.......++
T Consensus 94 ~~~d~~~~~~~~--l~~~~~~~~~~--~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 94 VLSKIPHGDPQS--LDPPEVSNAKL--QYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp EEEESSSCCCEE--CCCTTCCSCCC--SBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred EEEECCCCceEe--ccCCccccccc--cccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 899999886421 11111111111 12333333322 2222345556666655443322211
Q ss_pred ------CCeEecCCCCeEEEEecCC--------------------------------CceEEEEeCCCcceeeeeccCcC
Q 024245 152 ------SKDDVPAEGPKYMAVAGEQ--------------------------------LSEVEIWDLNTAERCTRLHQNSC 193 (270)
Q Consensus 152 ------~~~~~s~~~~~~~~~~~~~--------------------------------d~~i~iwd~~~~~~~~~~~~~~~ 193 (270)
..++|||||+.++.++... +..|++||+.+++....+.
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~---- 245 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM---- 245 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC----
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee----
Confidence 1289999999776543210 1279999999887656665
Q ss_pred CCCCCcc--cCCCceeeeeeecCCCCCCCceEEEEec----CCCcEEEEEcCCCCcceeeeec-cCCCee----EEEeec
Q 024245 194 GGSPNFS--SKGRGMCMAVQAYLPSKSQGFVNVLAGY----EDGSILVWDIRNPGIPLTAMKV-HLEPGL----ECSMWR 262 (270)
Q Consensus 194 ~~~~~h~--~~~~~~~~~~~~~~p~~~~g~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~-~~~~v~----~~~~s~ 262 (270)
.+. ......+..+. |+| ||+ +|++.. .+..|++||+.+ +++...+.. +...+. .++|+|
T Consensus 246 ----~~~~~~~~~~~~~~~~-~Sp---Dg~-~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~sp 315 (723)
T 1xfd_A 246 ----PPDDPRMREYYITMVK-WAT---STK-VAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQNEEPVFSK 315 (723)
T ss_dssp ----CCCCGGGSSEEEEEEE-ESS---SSE-EEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCCCCCCEECT
T ss_pred ----CCccCCCccceeEEEE-EeC---CCe-EEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEeccCCCceEcC
Confidence 221 01134677787 999 566 665553 335799999998 666655543 334443 899999
Q ss_pred CCCce
Q 024245 263 NPITM 267 (270)
Q Consensus 263 ~g~~l 267 (270)
||+.|
T Consensus 316 dg~~l 320 (723)
T 1xfd_A 316 DGRKF 320 (723)
T ss_dssp TSCSE
T ss_pred CCCeE
Confidence 99865
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=2.4e-18 Score=133.89 Aligned_cols=232 Identities=13% Similarity=0.075 Sum_probs=136.7
Q ss_pred ccccccccccEEEEEEeCCCCEEEEec-CCCcEEEEeCCC---CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CC
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGT-TGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RD 85 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d 85 (270)
+..+..+. .+..++|+|++++|++++ .++.|.+||+.. .+.+..+..+ ..+.+++|+| ++++|++++ .+
T Consensus 77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~~~~~~~ 150 (343)
T 1ri6_A 77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL---DGCHSANISP--DNRTLWVPALKQ 150 (343)
T ss_dssp EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC---TTBCCCEECT--TSSEEEEEEGGG
T ss_pred ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC---CCceEEEECC--CCCEEEEecCCC
Confidence 33444333 788999999999776655 488999999943 3444444433 4488999999 988888776 89
Q ss_pred CcEEEEEccC-CccCCCCcc--ceecc-cceEEEEeeccCCcccee--cCCCCceEEEecc--Cce--ee--e-ccCCCC
Q 024245 86 GTVKCWDIEN-GGLSSNPSL--TIKTN-SYHFCKLSLVKEPYANAK--QANEPKDCYEREV--GET--VD--T-DSLCDS 152 (270)
Q Consensus 86 ~~i~~wd~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~--~~--~-~~~~~~ 152 (270)
+.|.+||+.+ ++... .. ..... ......+.+......... ...+...+|++.. ++. .. . ...++.
T Consensus 151 ~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVA--QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS 228 (343)
T ss_dssp TEEEEEEECTTSCEEE--EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred CEEEEEEecCCCceee--ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccc
Confidence 9999999987 54321 11 11111 112222333222221222 2344566788743 221 11 1 111211
Q ss_pred ---C---eEecCCCCeEEEEecCCCceEEEEeCC--C--cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCce
Q 024245 153 ---K---DDVPAEGPKYMAVAGEQLSEVEIWDLN--T--AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (270)
Q Consensus 153 ---~---~~~s~~~~~~~~~~~~~d~~i~iwd~~--~--~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~ 222 (270)
. ++|+|+|+++++ ++..++.|.+||+. + .+.+..+. .+ ..+..++ |+|+ |+
T Consensus 229 ~~~~~~~i~~s~dg~~l~v-~~~~~~~i~v~d~~~~~~~~~~~~~~~--------~~-----~~~~~~~-~s~d---g~- 289 (343)
T 1ri6_A 229 DTRWAADIHITPDGRHLYA-CDRTASLITVFSVSEDGSVLSKEGFQP--------TE-----TQPRGFN-VDHS---GK- 289 (343)
T ss_dssp SCCCEEEEEECTTSSEEEE-EETTTTEEEEEEECTTSCCEEEEEEEE--------CS-----SSCCCEE-ECTT---SS-
T ss_pred ccCCccceEECCCCCEEEE-EecCCCEEEEEEEcCCCCceEEeeeec--------CC-----CccceEE-ECCC---CC-
Confidence 1 899999988775 45568999999998 2 23444444 11 1256676 9984 55
Q ss_pred EEEEec-CCCcEEEEEcCCC-C--cceeeeeccCCCeeEEEeecCCCceecC
Q 024245 223 NVLAGY-EDGSILVWDIRNP-G--IPLTAMKVHLEPGLECSMWRNPITMSEH 270 (270)
Q Consensus 223 ~l~~~~-~dg~i~vwd~~~~-~--~~~~~~~~~~~~v~~~~~s~~g~~ls~~ 270 (270)
+|++++ .++.|.+|++... + +.+..+.. .....+++|.|+.+..-.|
T Consensus 290 ~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~~~~~~ 340 (343)
T 1ri6_A 290 YLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEGGSHHH 340 (343)
T ss_dssp EEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC------
T ss_pred EEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccCCcccc
Confidence 555555 7899999965521 3 23444443 3567889999987665433
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.80 E-value=7.3e-18 Score=128.25 Aligned_cols=205 Identities=10% Similarity=0.087 Sum_probs=130.5
Q ss_pred EecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC-CccCCCCccceeccc-ce
Q 024245 35 AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGLSSNPSLTIKTNS-YH 112 (270)
Q Consensus 35 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~ 112 (270)
.++.|+.|++||+.+++... +..+. ..|.+++|+| ++++|++++ ++.|.+||+.+ ++... ...... ..
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~--~~v~~~~~sp--dg~~l~~~~-~~~i~~~d~~~~~~~~~----~~~~~~~~~ 86 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTP--ELFEAPNWSP--DGKYLLLNS-EGLLYRLSLAGDPSPEK----VDTGFATIC 86 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEES--SCCEEEEECT--TSSEEEEEE-TTEEEEEESSSCCSCEE----CCCTTCCCB
T ss_pred CCCcceeEEEEeCCCCceee-eccCC--cceEeeEECC--CCCEEEEEc-CCeEEEEeCCCCCCceE----ecccccccc
Confidence 45678999999999887664 44455 6699999999 999999876 78999999998 65432 111111 11
Q ss_pred EEEEeeccCCccceecC---CCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCC-ccee
Q 024245 113 FCKLSLVKEPYANAKQA---NEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERC 185 (270)
Q Consensus 113 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~ 185 (270)
...+.+........... .....+|.+.........+..+.. ++|+|+++.+++ ++..++.++||++.. +...
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~-~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTY-CGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEE-EEEETTEEEEEEEETTTCCE
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEE-EECCCCceEEEEEECCCCcc
Confidence 11122222111111111 124556655432222222322323 789999987765 444578899998642 2233
Q ss_pred eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE-EecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL-AGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g 264 (270)
..+. .+ ...+..+. |+|+ |+ +|+ ++..++.+++|++...+..+..+..|...+..++|+|+|
T Consensus 166 ~~~~--------~~----~~~~~~~~-~s~d---g~-~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 166 TRLT--------HG----EGRNDGPD-YSPD---GR-WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG 228 (297)
T ss_dssp EECC--------CS----SSCEEEEE-ECTT---SS-EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred eEcc--------cC----CCccccce-ECCC---CC-EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence 3343 22 33567777 9995 55 555 445699999999974366777888888889999999999
Q ss_pred Cce
Q 024245 265 ITM 267 (270)
Q Consensus 265 ~~l 267 (270)
++|
T Consensus 229 ~~l 231 (297)
T 2ojh_A 229 DKV 231 (297)
T ss_dssp SEE
T ss_pred CEE
Confidence 876
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.80 E-value=8.8e-18 Score=130.39 Aligned_cols=219 Identities=10% Similarity=0.061 Sum_probs=146.8
Q ss_pred cEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCC---CcceEEEEEeeCCCCCEEEEEe------------
Q 024245 20 SVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIGLNKVISQG------------ 83 (270)
Q Consensus 20 ~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~------------ 83 (270)
.+..++|+|+|+++ +++..++.|.+||+.+++.+..+..... ...+..++|+| ++++|++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEEEecccccccccccc
Confidence 47899999999765 5666788999999999988877764220 02477899999 998888876
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCC--CCeEecCCCC
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD--SKDDVPAEGP 161 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~ 161 (270)
.++.|.+||+.+++... .+.... ....+.+.......... .+...+|++.+++.......+. ....|+|++.
T Consensus 113 ~~~~i~v~d~~~~~~~~----~~~~~~-~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 186 (337)
T 1pby_B 113 QPTRVALYDAETLSRRK----AFEAPR-QITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL 186 (337)
T ss_dssp CCCEEEEEETTTTEEEE----EEECCS-SCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred cCceEEEEECCCCcEEE----EEeCCC-CcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCcc
Confidence 57999999998876433 222211 11112222222222222 4567778888877655433333 2278999998
Q ss_pred eEEEEecCCCc-----------------------eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245 162 KYMAVAGEQLS-----------------------EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218 (270)
Q Consensus 162 ~~~~~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~ 218 (270)
.+++ ++..++ .|.+||+.+++.. .+... .+ ......+. |+|+
T Consensus 187 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~------~~----~~~~~~~~-~s~d-- 251 (337)
T 1pby_B 187 AVWN-QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR------IM----DVFYFSTA-VNPA-- 251 (337)
T ss_dssp CCCC-CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE------EC----SSCEEEEE-ECTT--
T ss_pred EEee-eccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC------CC----CCceeeEE-ECCC--
Confidence 7664 343334 4689999988765 33310 11 23455677 9994
Q ss_pred CCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 219 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
|+ +++++ ++.|++||+.+ ++.+..+.. ...+.+++|+|||++|
T Consensus 252 -g~-~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 252 -KT-RAFGA--YNVLESFDLEK-NASIKRVPL-PHSYYSVNVSTDGSTV 294 (337)
T ss_dssp -SS-EEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred -CC-EEEEe--CCeEEEEECCC-CcCcceecC-CCceeeEEECCCCCEE
Confidence 55 66666 79999999998 777777764 3568899999999864
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=6.7e-18 Score=131.04 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=133.4
Q ss_pred cEEEEEEeCCCCEEEEec------------CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 20 SVTDVCFHQTKPILFAGT------------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
.+.+++|+|+|++|++++ .++.|.+||+.+++.+..+... ..+.+++|+| ++++|+++ ++.
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~~~--~~~ 155 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWAR--DGSKLYGL--GRD 155 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECT--TSSCEEEE--SSS
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECC--CCCEEEEe--CCe
Confidence 677899999999888886 5799999999998888777653 4478899999 98988877 688
Q ss_pred EEEEEccCCccCCCCccceeccc-ceEEEEeeccCCccceecCCC-----------------------CceEEEeccCce
Q 024245 88 VKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANE-----------------------PKDCYEREVGET 143 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 143 (270)
|.+||+.+++... .+.... .....++.............. ....++...++.
T Consensus 156 i~~~d~~~~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 156 LHVMDPEAGTLVE----DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp EEEEETTTTEEEE----EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred EEEEECCCCcEee----eeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 9999999876532 111111 000011111111100000000 134567766655
Q ss_pred eeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245 144 VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219 (270)
Q Consensus 144 ~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~ 219 (270)
....+..+.. ++|+|+|++++++ ++.|.+||+.+++.+..+.. . ..+.+++ |+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~--------~-----~~~~~~~-~s~d--- 290 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIKRVPL--------P-----HSYYSVN-VSTD--- 290 (337)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEEEEEC--------S-----SCCCEEE-ECTT---
T ss_pred eEeecCCCCCceeeEEECCCCCEEEEe----CCeEEEEECCCCcCcceecC--------C-----CceeeEE-ECCC---
Confidence 4322333322 8999999877653 58999999999988877762 1 2355676 9985
Q ss_pred CceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245 220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (270)
Q Consensus 220 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 251 (270)
|+ +|++++.++.|++||+.+ ++.+..+..+
T Consensus 291 g~-~l~~~~~~~~i~v~d~~~-~~~~~~~~~~ 320 (337)
T 1pby_B 291 GS-TVWLGGALGDLAAYDAET-LEKKGQVDLP 320 (337)
T ss_dssp SC-EEEEESBSSEEEEEETTT-CCEEEEEECG
T ss_pred CC-EEEEEcCCCcEEEEECcC-CcEEEEEEcC
Confidence 55 777778899999999998 7777777654
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.6e-16 Score=124.73 Aligned_cols=229 Identities=7% Similarity=-0.004 Sum_probs=133.7
Q ss_pred ccccEEEEEEeCCCCEEEEecCC----CcEEEEeCCC--Ccee--EEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCc
Q 024245 17 HRASVTDVCFHQTKPILFAGTTG----GELRIWDTVQ--HRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGT 87 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~d----g~i~vwd~~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~ 87 (270)
+...+..++|+|+|++|++++.+ +.|.+|++.. ++.. .....+. .....+++ ++++|++++ .++.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~--~~p~~~~~----dg~~l~~~~~~~~~ 121 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG--ADPCYLTT----NGKNIVTANYSGGS 121 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS--SCEEEEEE----CSSEEEEEETTTTE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC--CCcEEEEE----CCCEEEEEECCCCE
Confidence 56677889999999999998886 7999999875 4332 2333233 34666776 346666555 6889
Q ss_pred EEEEEccCCccCCCCcccee--cc--------cceEEEEeeccCCcccee--cCCCCceEEEeccCce------e-----
Q 024245 88 VKCWDIENGGLSSNPSLTIK--TN--------SYHFCKLSLVKEPYANAK--QANEPKDCYEREVGET------V----- 144 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~----- 144 (270)
|.+|++.............. .. ......+.+......... .......+|++..... +
T Consensus 122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 99999976543321111111 00 001111222222221222 2234456677664431 1
Q ss_pred --eeccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCC
Q 024245 145 --DTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK 217 (270)
Q Consensus 145 --~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~ 217 (270)
......... ++|+|+|+++++ ++..++.|.+||+.+++. +..+.. ... .......++ |+|
T Consensus 202 ~~~~~~~~~~~~~~~~~spdg~~l~v-~~~~~~~v~v~~~~~g~~~~~~~~~~--------~~~-~~~~~~~i~-~sp-- 268 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNSDGKFAYL-INEIGGTVIAFRYADGMLDEIQTVAA--------DTV-NAQGSGDIH-LSP-- 268 (361)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEE-EETTTCEEEEEEEETTEEEEEEEEES--------CSS-CCCCEEEEE-ECT--
T ss_pred ccceecCCCCCCeEEEEcCCCCEEEE-EcCCCCeEEEEEecCCceEEeEEEec--------CCC-CCCCcccEE-ECC--
Confidence 111221222 899999987765 454579999999987654 233321 111 112345676 999
Q ss_pred CCCceEEEEec-C-CCcEEEEEcCC-CCc--ceeeeeccCCCeeEEEeecCCCce
Q 024245 218 SQGFVNVLAGY-E-DGSILVWDIRN-PGI--PLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 218 ~~g~~~l~~~~-~-dg~i~vwd~~~-~~~--~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
||+ +|+++. . ++.|.+|++.. .++ .+..+.. ...+.+++|+|||++|
T Consensus 269 -dg~-~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l 320 (361)
T 3scy_A 269 -DGK-YLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYL 320 (361)
T ss_dssp -TSS-EEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred -CCC-EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEE
Confidence 466 565544 4 58999999962 133 3444444 5578899999999865
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=6.4e-18 Score=144.38 Aligned_cols=233 Identities=6% Similarity=-0.010 Sum_probs=142.4
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCC----------------cceEEEEEeeCCCC
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----------------HGIVSVATGPSIGL 76 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~ 76 (270)
...+|...+..++|||||+.||.++. +.|++||+.+++..+....+... ..+.+++|+| +|
T Consensus 108 ~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg 184 (723)
T 1xfd_A 108 PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DG 184 (723)
T ss_dssp CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT--TS
T ss_pred CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC--CC
Confidence 33456666899999999999999886 78999999988777665543311 1237899999 99
Q ss_pred CEEEEEeCCC----------------------------------cEEEEEccCCccCCCCccceeccc----ceEEEEee
Q 024245 77 NKVISQGRDG----------------------------------TVKCWDIENGGLSSNPSLTIKTNS----YHFCKLSL 118 (270)
Q Consensus 77 ~~l~s~~~d~----------------------------------~i~~wd~~~~~~~~~~~~~~~~~~----~~~~~~~~ 118 (270)
+.|++++.|+ .|.+||+.+++... .+.... .......+
T Consensus 185 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~----~l~~~~~~~~~~~~~~~~ 260 (723)
T 1xfd_A 185 TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL----EMMPPDDPRMREYYITMV 260 (723)
T ss_dssp SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE----ECCCCCCGGGSSEEEEEE
T ss_pred CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE----EeeCCccCCCccceeEEE
Confidence 9999887553 79999998876422 121110 01112233
Q ss_pred ccCCccceec----CC---CCceEEEeccCceeeeccC---CC-----CCeEecCCCCeEEEEecCCCc------eEEEE
Q 024245 119 VKEPYANAKQ----AN---EPKDCYEREVGETVDTDSL---CD-----SKDDVPAEGPKYMAVAGEQLS------EVEIW 177 (270)
Q Consensus 119 ~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~---~~-----~~~~~s~~~~~~~~~~~~~d~------~i~iw 177 (270)
.+++++..+. .+ ....+|++.+++....... +. ..++|+|||+.++++++..++ .|.+|
T Consensus 261 ~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 340 (723)
T 1xfd_A 261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS 340 (723)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred EEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEE
Confidence 3344433221 11 2344567776654332111 11 238999999988765455566 57777
Q ss_pred eC-CCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE-EecCC--CcEEEEEcCCCCc-ceeeeec
Q 024245 178 DL-NTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL-AGYED--GSILVWDIRNPGI-PLTAMKV 250 (270)
Q Consensus 178 d~-~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~-~~~~d--g~i~vwd~~~~~~-~~~~~~~ 250 (270)
|+ ..++. ...+.. ++ ......+. |+|+ |+ .|+ ++..+ +.++||++...+. ....+..
T Consensus 341 d~~~~~~~~~~~~l~~-------~~----~~~~~~~~-~spd---g~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 404 (723)
T 1xfd_A 341 SSQPNSSNDNIQSITS-------GD----WDVTKILA-YDEK---GN-KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC 404 (723)
T ss_dssp CSSCCSSSCCCCBSCC-------SS----SCEEEEEE-EETT---TT-EEEEEESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred eccCCCCccceeEeec-------CC----eEEEeeeE-EcCC---CC-EEEEEEcCCCCcceEEEEEeCCCCCCcceecc
Confidence 73 43331 444441 11 11222245 9994 55 554 44555 8899999875332 3344443
Q ss_pred ---cCCCeeEEEeecCCCcee
Q 024245 251 ---HLEPGLECSMWRNPITMS 268 (270)
Q Consensus 251 ---~~~~v~~~~~s~~g~~ls 268 (270)
|...+..++|+|||++|.
T Consensus 405 ~~~~~~~~~~~~~spdg~~l~ 425 (723)
T 1xfd_A 405 DLVENCTYFSASFSHSMDFFL 425 (723)
T ss_dssp TSSSSCCCCEEEECTTSSEEE
T ss_pred cccCCCCeEEEEECCCCCEEE
Confidence 567789999999998763
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=1.8e-17 Score=141.37 Aligned_cols=229 Identities=11% Similarity=-0.021 Sum_probs=143.0
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC---
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN--- 95 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--- 95 (270)
..|.+++|+|+ ..++.+. ++.|++||+.+++..... .+. ..+.+++|+| +|++|+++ .|+.|.+||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~-~~~--~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF-DTN--EETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGE 153 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE-CCT--TCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTS
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc-CCc--ccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccc
Confidence 56999999999 5555543 589999999988765443 344 4588999999 99999885 689999999998
Q ss_pred --CccCCCCccceeccc--------------ceEEEEeeccCCccceec-------------------------------
Q 024245 96 --GGLSSNPSLTIKTNS--------------YHFCKLSLVKEPYANAKQ------------------------------- 128 (270)
Q Consensus 96 --~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~------------------------------- 128 (270)
++... +....... .....++.++........
T Consensus 154 ~~g~~~~--~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 154 GMSRAIA--VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CCCCCEE--SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred cCCCcEE--eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 65432 11111110 011122222211111110
Q ss_pred -CCCCceEEEeccCceeeeccC-CCCC----eEecCCCCeEEEEecCC---CceEEEEeCCCcceeeeeccCcCCCCCCc
Q 024245 129 -ANEPKDCYEREVGETVDTDSL-CDSK----DDVPAEGPKYMAVAGEQ---LSEVEIWDLNTAERCTRLHQNSCGGSPNF 199 (270)
Q Consensus 129 -~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~s~~~~~~~~~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~h 199 (270)
......+|++..++....... .+.. ++|+|||+.+++++... +..|++||+.+++....+.. .+
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-------~~ 304 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-------ET 304 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-------EE
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-------cc
Confidence 112344577776664433322 3333 89999999776543221 13899999998844333331 11
Q ss_pred ccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeE-EEeecCCCce
Q 024245 200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLE-CSMWRNPITM 267 (270)
Q Consensus 200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l 267 (270)
.......+..+. |+|. .||+ ++++++.||.++||++...+..+..+..+...+.+ ++|+|||+.|
T Consensus 305 ~~~~~~~~~~~~-~sp~-~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l 370 (706)
T 2z3z_A 305 DKHYVEPLHPLT-FLPG-SNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRL 370 (706)
T ss_dssp CSSCCCCCSCCE-ECTT-CSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEE
T ss_pred CCCeECccCCce-eecC-CCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEE
Confidence 110111234566 9981 0345 88999999999999987436777788877777877 8999999765
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.78 E-value=3.9e-18 Score=145.40 Aligned_cols=227 Identities=11% Similarity=0.022 Sum_probs=142.9
Q ss_pred ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-----CceeEEEeecCCC------------cceEEEEEeeCCC
Q 024245 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAA------------HGIVSVATGPSIG 75 (270)
Q Consensus 13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~------------~~v~~~~~~~~~~ 75 (270)
.+..+...+.+++|+|||++|+++ .|+.|++||+.+ ++.......+... ..+.++.|+| +
T Consensus 115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp--D 191 (706)
T 2z3z_A 115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP--K 191 (706)
T ss_dssp EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT--T
T ss_pred EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC--C
Confidence 344566778899999999999985 679999999998 7766544433310 0148899999 9
Q ss_pred CCEEEEEe---------------------------------CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCC
Q 024245 76 LNKVISQG---------------------------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP 122 (270)
Q Consensus 76 ~~~l~s~~---------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (270)
|++|++++ .+..|.+||+.+++... +.....+..... .+.+++
T Consensus 192 g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~--~~~~sp 267 (706)
T 2z3z_A 192 GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY--LQTGEPKEKFLT--NLSWSP 267 (706)
T ss_dssp SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE--CCCCSCTTCEEE--EEEECT
T ss_pred CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe--eccCCCCceeEe--eEEEEC
Confidence 99999887 44679999999876432 111111222222 233333
Q ss_pred ccceec----CC----CCceEEEeccCceeeecc-CCC-------CCeEecC--CCCeEEEEecCCCceEEEEeCC-Ccc
Q 024245 123 YANAKQ----AN----EPKDCYEREVGETVDTDS-LCD-------SKDDVPA--EGPKYMAVAGEQLSEVEIWDLN-TAE 183 (270)
Q Consensus 123 ~~~~~~----~~----~~~~~~~~~~~~~~~~~~-~~~-------~~~~~s~--~~~~~~~~~~~~d~~i~iwd~~-~~~ 183 (270)
....+. .. .....|++.+++...... ..+ ..++|+| +|+ +++ +++.|+.++||++. ++.
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~-~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIW-QSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEE-EECTTSSCEEEEEETTSC
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEE-EEccCCccEEEEEECCCC
Confidence 332111 11 144557777763222211 111 1279999 997 443 45668899999876 566
Q ss_pred eeeeeccCcCCCCCCcccCCCceeee-eeecCCCCCCCceEEEEecCCC----cEEEEEcCCCCcceeeeeccCCCeeEE
Q 024245 184 RCTRLHQNSCGGSPNFSSKGRGMCMA-VQAYLPSKSQGFVNVLAGYEDG----SILVWDIRNPGIPLTAMKVHLEPGLEC 258 (270)
Q Consensus 184 ~~~~~~~~~~~~~~~h~~~~~~~~~~-~~~~~p~~~~g~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~ 258 (270)
.+..+. .+. ..+.. +. |+|+ |+.++++++.++ .|+.||+.+ ++ ...+. +...+.++
T Consensus 346 ~~~~l~--------~~~----~~v~~~~~-~spd---g~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~-~~~~~~~~ 406 (706)
T 2z3z_A 346 LIRQVT--------KGE----WEVTNFAG-FDPK---GTRLYFESTEASPLERHFYCIDIKG-GK-TKDLT-PESGMHRT 406 (706)
T ss_dssp EEEECC--------CSS----SCEEEEEE-ECTT---SSEEEEEESSSCTTCBEEEEEETTC-CC-CEESC-CSSSEEEE
T ss_pred EEEecC--------CCC----eEEEeeeE-EcCC---CCEEEEEecCCCCceEEEEEEEcCC-CC-ceecc-CCCceEEE
Confidence 666666 332 23444 55 9995 553555666665 677777776 44 34444 56789999
Q ss_pred EeecCCCce
Q 024245 259 SMWRNPITM 267 (270)
Q Consensus 259 ~~s~~g~~l 267 (270)
+|||||++|
T Consensus 407 ~~spdg~~l 415 (706)
T 2z3z_A 407 QLSPDGSAI 415 (706)
T ss_dssp EECTTSSEE
T ss_pred EECCCCCEE
Confidence 999999876
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.78 E-value=1.8e-17 Score=146.91 Aligned_cols=219 Identities=9% Similarity=0.026 Sum_probs=144.8
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecC---------CCcceEEEEEe-eCCCCCEEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS---------AAHGIVSVATG-PSIGLNKVIS 81 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~v~~~~~~-~~~~~~~l~s 81 (270)
..+..|. .+...+|+|+|++|+.+ .++.|++||+... .+..+..+. ....+.+++|+ | +|++|++
T Consensus 239 ~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p--dG~~la~ 313 (1045)
T 1k32_A 239 RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPL--DGDLIAF 313 (1045)
T ss_dssp EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEEC--GGGCEEE
T ss_pred eEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCC--CCCEEEE
Confidence 3444454 46678999999988887 4889999999543 333444321 01358999999 9 9999988
Q ss_pred EeCCCcEEEEEccCCccCCCCccceecccc-eEEEEeeccCCccceecC-CCCceEE---EeccCceeeeccCCCCC---
Q 024245 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQA-NEPKDCY---EREVGETVDTDSLCDSK--- 153 (270)
Q Consensus 82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~--- 153 (270)
++ ++.|.+|++.++.... +..+.. .. ..+.+. ....+.. .....+| +...++... +.++..
T Consensus 314 ~~-~~~i~~~~~~~~~~~~-----~~~~~~~~~--~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~--l~~~~~~~~ 382 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVLK-----VPEPLRIRY--VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK--FEENLGNVF 382 (1045)
T ss_dssp EE-TTEEEEECTTSSBEEE-----CSCCSCEEE--EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE--CCCCCCSEE
T ss_pred EE-cCEEEEEcCCCCceEE-----ccCCCcceE--EeeeEc-CCCeEEEEECCCceEEEEECCCCCceE--ecCCcccee
Confidence 87 7899999998765322 111211 22 222232 2211111 1123334 544443322 224433
Q ss_pred -eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC-
Q 024245 154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG- 231 (270)
Q Consensus 154 -~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg- 231 (270)
++|+|+|+.++. ++.++.|++||+.+++....+. +| ...+..++ |+|+ |+ +|++++.++
T Consensus 383 ~~~~SpDG~~la~--~~~~~~v~~~d~~tg~~~~~~~--------~~----~~~v~~~~-~SpD---G~-~la~~~~~~~ 443 (1045)
T 1k32_A 383 AMGVDRNGKFAVV--ANDRFEIMTVDLETGKPTVIER--------SR----EAMITDFT-ISDN---SR-FIAYGFPLKH 443 (1045)
T ss_dssp EEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEE--------CS----SSCCCCEE-ECTT---SC-EEEEEEEECS
T ss_pred eeEECCCCCEEEE--ECCCCeEEEEECCCCceEEecc--------CC----CCCccceE-ECCC---CC-eEEEEecCcc
Confidence 899999987664 4457899999999998777765 44 23456676 9994 65 777776544
Q ss_pred ---------cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 232 ---------SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 232 ---------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
.|++||+.+ ++ ...+..|...+..++|+|||++|
T Consensus 444 ~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~~~~~~spdG~~l 486 (1045)
T 1k32_A 444 GETDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNL 486 (1045)
T ss_dssp STTCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEE
T ss_pred ccccCCCCCeEEEEECCC-Cc-EEEeeCCCcccCCceEcCCCCEE
Confidence 899999997 55 66777788889999999999875
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=4e-18 Score=145.63 Aligned_cols=226 Identities=8% Similarity=-0.046 Sum_probs=141.9
Q ss_pred EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEeeCCCCCEEEEEeC---------CCcEEEE
Q 024245 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGR---------DGTVKCW 91 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~---------d~~i~~w 91 (270)
.+++|+|+|++++++ .|+.|++||+.+++....+..+.. ...+.+++|+| ||++|++++. ++.|++|
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEE
Confidence 378999999766655 699999999999988777765531 01388999999 9999998876 7899999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCC--------------------
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD-------------------- 151 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 151 (270)
|+.+++... ...+. .......+++++.. ........+.+|++..++.......++
T Consensus 96 d~~~g~~~~--~~~l~-~~~~~~~~SPDG~~--la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 96 DLSNGEFVR--GNELP-RPIQYLCWSPVGSK--LAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp ETTTTEECC--SSCCC-SSBCCEEECSSTTC--EEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred ECCCCcccc--ceecC-cccccceECCCCCE--EEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 999887521 01111 12222233333322 222234455667776665443322221
Q ss_pred -CCeEecCCCCeEEEEecCC--------------------------------CceEEEEeCCCccee--eeeccCcCCCC
Q 024245 152 -SKDDVPAEGPKYMAVAGEQ--------------------------------LSEVEIWDLNTAERC--TRLHQNSCGGS 196 (270)
Q Consensus 152 -~~~~~s~~~~~~~~~~~~~--------------------------------d~~i~iwd~~~~~~~--~~~~~~~~~~~ 196 (270)
..++|||||+.++.++... ...|++||+.+++.. ..+..+
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~----- 245 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP----- 245 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC-----
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC-----
Confidence 2389999999876543211 127899999987753 122100
Q ss_pred CCcccCCCceeeeeeecCCCCCCCceEEEEecCC----CcEEEEE----cCCCCcceeee----eccCCCee-----EEE
Q 024245 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSILVWD----IRNPGIPLTAM----KVHLEPGL-----ECS 259 (270)
Q Consensus 197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d----g~i~vwd----~~~~~~~~~~~----~~~~~~v~-----~~~ 259 (270)
.........+..+. |+|+ ++ ++++.... ..|.+|| +.+ +++...+ .+|...+. .++
T Consensus 246 -~~~~~~~~~~~~~~-~SpD---~~-~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (719)
T 1z68_A 246 -AMIASSDYYFSWLT-WVTD---ER-VCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGGFFVSTPV 318 (719)
T ss_dssp -HHHHTSCEEEEEEE-ESSS---SE-EEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSSSSCCCCE
T ss_pred -ccCCCCcceEEEeE-EeCC---Ce-EEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEccccCCccE
Confidence 00001244677887 9994 55 66664322 3488899 776 5555555 46777777 899
Q ss_pred eecCCCce
Q 024245 260 MWRNPITM 267 (270)
Q Consensus 260 ~s~~g~~l 267 (270)
|+|||+.|
T Consensus 319 ~spdg~~l 326 (719)
T 1z68_A 319 FSYDAISY 326 (719)
T ss_dssp ECTTSSCE
T ss_pred ECCCCCeE
Confidence 99999853
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=3.3e-17 Score=127.81 Aligned_cols=214 Identities=10% Similarity=0.044 Sum_probs=136.0
Q ss_pred Cccccccccc-ccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCC----CcceEEEEEeeCCCCCEEEEE
Q 024245 9 DPVAVLRGHR-ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 9 ~~~~~~~~h~-~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~ 82 (270)
+.+..+..+. ..+..++|+|+|+++ +++..++.|.+||+.+++.+..+..... ...+..++|+| +|++|+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~ 109 (349)
T 1jmx_B 32 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYAT 109 (349)
T ss_dssp EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEE
T ss_pred cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEEE
Confidence 3444454332 257889999999855 5566789999999999988877764321 13378899999 99999988
Q ss_pred eCC------------CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC
Q 024245 83 GRD------------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (270)
Q Consensus 83 ~~d------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (270)
+.+ +.|.+||+.+++... .+....... ....+.+..... ....+.....|+..+++.......+
T Consensus 110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~-~~~~~~~s~dg~--l~~~~~~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 110 VNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFPMPR-QVYLMRAADDGS--LYVAGPDIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp EEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEECCS-SCCCEEECTTSC--EEEESSSEEEECTTTCCEEEEECST
T ss_pred cccccccccccccCCCeEEEEECCCccccc-eeeeccCCC-cccceeECCCCc--EEEccCcEEEEeCCCCceecccccc
Confidence 865 899999998865332 111111111 111112222111 2222333555665554433221111
Q ss_pred C---------------------------------------------------------------------CC--eEecC-
Q 024245 151 D---------------------------------------------------------------------SK--DDVPA- 158 (270)
Q Consensus 151 ~---------------------------------------------------------------------~~--~~~s~- 158 (270)
. .. ++|+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 265 (349)
T 1jmx_B 186 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 265 (349)
T ss_dssp TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS
T ss_pred ccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCC
Confidence 0 01 56779
Q ss_pred CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~ 238 (270)
+++.++++ ++.|.+||+.+++.+..+.. ++ .+..++ |+|+ |+ +|++++.++.|++||+
T Consensus 266 dg~~l~~~----~~~v~~~d~~~~~~~~~~~~-------~~------~~~~~~-~s~d---g~-~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 266 DPNQIYGV----LNRLAKYDLKQRKLIKAANL-------DH------TYYCVA-FDKK---GD-KLYLGGTFNDLAVFNP 323 (349)
T ss_dssp CTTEEEEE----ESEEEEEETTTTEEEEEEEC-------SS------CCCEEE-ECSS---SS-CEEEESBSSEEEEEET
T ss_pred CCCEEEEE----cCeEEEEECccCeEEEEEcC-------CC------CccceE-ECCC---CC-EEEEecCCCeEEEEec
Confidence 99876653 68999999999988877762 11 345666 9985 44 5666788899999999
Q ss_pred CCCCcceeeeecc
Q 024245 239 RNPGIPLTAMKVH 251 (270)
Q Consensus 239 ~~~~~~~~~~~~~ 251 (270)
.+ ++.+..++..
T Consensus 324 ~~-~~~~~~~~~~ 335 (349)
T 1jmx_B 324 DT-LEKVKNIKLP 335 (349)
T ss_dssp TT-TEEEEEEECS
T ss_pred cc-cceeeeeecC
Confidence 98 7777777654
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=4.6e-17 Score=126.97 Aligned_cols=224 Identities=9% Similarity=0.060 Sum_probs=138.8
Q ss_pred EEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCCC
Q 024245 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSN 101 (270)
Q Consensus 23 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~ 101 (270)
++++++++.++++++.++.|++||+.+++.+..+..+.. ..+..++|+| ++++++ +...++.|.+||+.+++...
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~- 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTF- 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEE-
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEE-
Confidence 456788888999999999999999999998888775431 2478999999 888654 55678999999999876533
Q ss_pred Cccceeccc--------ceEEEEeeccCCccceecC-----------CCCceEEEeccCceeee--ccCCCCC---eEec
Q 024245 102 PSLTIKTNS--------YHFCKLSLVKEPYANAKQA-----------NEPKDCYEREVGETVDT--DSLCDSK---DDVP 157 (270)
Q Consensus 102 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~---~~~s 157 (270)
.+.... .....++............ .....+|++.+++.... ....+.. ++|+
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 156 (349)
T 1jmx_B 80 ---HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 156 (349)
T ss_dssp ---EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred ---EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeEC
Confidence 222111 1111222222111111111 25566788876442221 1112222 7899
Q ss_pred CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCc-----------ccC------------------------
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF-----------SSK------------------------ 202 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h-----------~~~------------------------ 202 (270)
|+|+ +++ .+ +.|.+||+.+++.+..+....... ..+ ...
T Consensus 157 ~dg~-l~~-~~---~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 230 (349)
T 1jmx_B 157 DDGS-LYV-AG---PDIYKMDVKTGKYTVALPLRNWNR-KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 230 (349)
T ss_dssp TTSC-EEE-ES---SSEEEECTTTCCEEEEECSTTCCC-TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred CCCc-EEE-cc---CcEEEEeCCCCceeccccccccCC-ccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence 9998 654 33 349999999998877765311000 000 000
Q ss_pred ----------------------CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEe
Q 024245 203 ----------------------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSM 260 (270)
Q Consensus 203 ----------------------~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 260 (270)
.......++ |+|. +|+ +++++ ++.|.+||+.+ ++.+..+.. ...+.+++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sp~--dg~-~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~ 302 (349)
T 1jmx_B 231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGL-RSPK--DPN-QIYGV--LNRLAKYDLKQ-RKLIKAANL-DHTYYCVAF 302 (349)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEE-ECSS--CTT-EEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEE
T ss_pred cceeEEEEeccCCcEEecccccCCCcceeeE-ecCC--CCC-EEEEE--cCeEEEEECcc-CeEEEEEcC-CCCccceEE
Confidence 000123344 6661 344 66666 88999999998 777777764 346789999
Q ss_pred ecCCCce
Q 024245 261 WRNPITM 267 (270)
Q Consensus 261 s~~g~~l 267 (270)
+|||++|
T Consensus 303 s~dg~~l 309 (349)
T 1jmx_B 303 DKKGDKL 309 (349)
T ss_dssp CSSSSCE
T ss_pred CCCCCEE
Confidence 9998765
No 156
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.7e-16 Score=124.62 Aligned_cols=231 Identities=10% Similarity=0.040 Sum_probs=146.1
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEec----------CCCcEEEEeCCCCceeEEEeecCC----CcceEEEEEeeCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSI 74 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~ 74 (270)
+.+.++..+..+ .++|+|+|++++++. .++.|.+||..+.+.+..+..... ......++++|
T Consensus 42 ~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-- 117 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-- 117 (361)
T ss_dssp CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT--
T ss_pred eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC--
Confidence 344455555444 899999999998876 367899999999988888764310 02367899999
Q ss_pred CCCEEEEEeC--CCcEEEEEccCCccCCCCccceec---------ccceEE---------EEeeccCCcc----------
Q 024245 75 GLNKVISQGR--DGTVKCWDIENGGLSSNPSLTIKT---------NSYHFC---------KLSLVKEPYA---------- 124 (270)
Q Consensus 75 ~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~---------~~~~~~---------~~~~~~~~~~---------- 124 (270)
+|++|+++.. +++|.+||+.+++..... ..... ...... .+........
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~-i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~ 196 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYVEDV-TAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF 196 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEE-GGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCS
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEEEEE-ecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceE
Confidence 9999998864 579999999988654310 00000 000000 0111000000
Q ss_pred ------------------ceecCCCCceEEEeccCcee-eec--------------cCCCCCeEecCCCCeEEEEec--C
Q 024245 125 ------------------NAKQANEPKDCYEREVGETV-DTD--------------SLCDSKDDVPAEGPKYMAVAG--E 169 (270)
Q Consensus 125 ------------------~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~s~~~~~~~~~~~--~ 169 (270)
......+....+++...... ... ..+...++|+|++++++++.. .
T Consensus 197 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 197 SVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp CTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred cCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence 00000111222333222110 000 011122789999988887532 0
Q ss_pred -------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 170 -------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 170 -------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
..+.|.+||+.+++.+.++.. + . ...++ |+|+ |+ +|++++. +.|.+||..+ +
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~--------~-----~-p~~ia-~spd---g~-~l~v~n~-~~v~v~D~~t-~ 335 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQRVARIPG--------R-----D-ALSMT-IDQQ---RN-LMLTLDG-GNVNVYDISQ-P 335 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEEEEEEEC--------T-----T-CCEEE-EETT---TT-EEEEECS-SCEEEEECSS-S
T ss_pred CcccccCCCceEEEEECCCCcEEEEEec--------C-----C-eeEEE-ECCC---CC-EEEEeCC-CeEEEEECCC-C
Confidence 135899999999999999882 3 2 67777 9994 66 7777776 9999999999 8
Q ss_pred --cceeeeeccCCCeeEEEeecCCC
Q 024245 243 --IPLTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 243 --~~~~~~~~~~~~v~~~~~s~~g~ 265 (270)
+.+..+..+......++++|||.
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cceeeEEeccCCCCcEEEEecCCCC
Confidence 88888766778889999999986
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=1.2e-16 Score=126.58 Aligned_cols=236 Identities=10% Similarity=0.024 Sum_probs=137.7
Q ss_pred CCcccccccccccEEE-----EEEeCCCCEEEEecC-CC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE
Q 024245 8 PDPVAVLRGHRASVTD-----VCFHQTKPILFAGTT-GG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV 79 (270)
Q Consensus 8 ~~~~~~~~~h~~~v~~-----~~~s~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 79 (270)
...+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++.......+. ..+..+.|+| +++.|
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~--~~~~~~~~sp--dg~~l 95 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG--DNTFGGFLSP--DDDAL 95 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC--BCSSSCEECT--TSSEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC--CCccceEEcC--CCCEE
Confidence 3456667777766666 889999999888877 66 48889999888877666554 3355778999 99999
Q ss_pred EEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcccee-------------------------cCCCCce
Q 024245 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK-------------------------QANEPKD 134 (270)
Q Consensus 80 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~ 134 (270)
+.++.++.|.+||+.+++... +...+........+.. .+....+ .......
T Consensus 96 ~~~~~~~~l~~~d~~~g~~~~--~~~~~~~~~~~~~~~~--~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLATLEENV--VYQVPAEWVGYGTWVA--NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp EEEETTTEEEEEETTTCCEEE--EEECCTTEEEEEEEEE--CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred EEEeCCCeEEEEECCCCccee--eeechhhcccccceeE--CCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 999999999999999886432 2222211111111111 1111111 0112334
Q ss_pred EEEeccCceeeeccCCC-CC-eEecC-CCCeEEEEecCC----CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCcee
Q 024245 135 CYEREVGETVDTDSLCD-SK-DDVPA-EGPKYMAVAGEQ----LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC 207 (270)
Q Consensus 135 ~~~~~~~~~~~~~~~~~-~~-~~~s~-~~~~~~~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 207 (270)
.+++.+++......... .. +.|+| +|+.++.+.... ...|.++|...++. ..+. .+. ....+
T Consensus 172 ~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--------~~~--~~~~~ 240 (388)
T 3pe7_A 172 RVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVK--------THA--EGESC 240 (388)
T ss_dssp EEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESC--------CCC--TTEEE
T ss_pred EEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEee--------eCC--CCccc
Confidence 46666654332221111 11 89999 998776544321 34788888775443 3443 111 11245
Q ss_pred eeeeecCCCCCCCceEEEEecCCC----cEEEEEcCCCCcc--eeeeeccCC---CeeEEEeecCCCce
Q 024245 208 MAVQAYLPSKSQGFVNVLAGYEDG----SILVWDIRNPGIP--LTAMKVHLE---PGLECSMWRNPITM 267 (270)
Q Consensus 208 ~~~~~~~p~~~~g~~~l~~~~~dg----~i~vwd~~~~~~~--~~~~~~~~~---~v~~~~~s~~g~~l 267 (270)
..+. |+|+ |+.++++...++ .|++||+.+ ++. +..+.++.. ....++|+|||+.|
T Consensus 241 ~~~~-~spd---g~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l 304 (388)
T 3pe7_A 241 THEF-WVPD---GSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMSNYDGSLMVGDGSDA 304 (388)
T ss_dssp EEEE-ECTT---SSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEECTTSSEEEEEECCC
T ss_pred ccce-ECCC---CCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeeecCCCCeEccCCCcc
Confidence 5666 9995 552333333222 399999998 543 223332110 12334799998865
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.74 E-value=1.3e-15 Score=118.84 Aligned_cols=207 Identities=7% Similarity=0.078 Sum_probs=121.7
Q ss_pred ccccccccccEEEEEEeCCCCEEEEec-CCCcEEEEeCCC-Cc--eeEEEeecCC-------CcceEEEEEeeCCCCCEE
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGT-TGGELRIWDTVQ-HR--TVSSSWVHSA-------AHGIVSVATGPSIGLNKV 79 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~-~~--~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l 79 (270)
+..+..+...+..++|+|+|++|++++ .++.|.+|++.. +. .+..+..... ...+.+++|+| +|+++
T Consensus 78 ~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~ 155 (347)
T 3hfq_A 78 LNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLA 155 (347)
T ss_dssp EEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEE
T ss_pred eeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEE
Confidence 344455777889999999999888877 679999999963 32 2333322110 12488999999 98866
Q ss_pred EEEeCCCcEEEEEcc-CCccCCCCccceeccc-ceEEEEeeccCCcccee--cCCCCceEEEecc--Ccee--ee--ccC
Q 024245 80 ISQGRDGTVKCWDIE-NGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAK--QANEPKDCYEREV--GETV--DT--DSL 149 (270)
Q Consensus 80 ~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~--~~--~~~ 149 (270)
++...++.|.+||+. +++... ...+.... .....+.+.......+. .......+|++.. ++.. .. ...
T Consensus 156 v~~~~~~~v~~~~~~~~g~~~~--~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 233 (347)
T 3hfq_A 156 VIDLGSDKVYVYNVSDAGQLSE--QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP 233 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEE--EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC
T ss_pred EEeCCCCEEEEEEECCCCcEEE--eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC
Confidence 677778899999998 443221 11111111 11112222222221222 2334456677664 3211 11 111
Q ss_pred CC----CC---eEecCCCCeEEEEecCCCceEEEEeCCCc---ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245 150 CD----SK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219 (270)
Q Consensus 150 ~~----~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~ 219 (270)
.. .. ++|+|+|++++++ ...++.|.+||+... +.+..+. .+ ...+..++ |+|+
T Consensus 234 ~~~~~~~~~~~i~~spdG~~l~v~-~~~~~~v~v~~~~~~g~~~~~~~~~--------~~----~~~~~~~~-~spd--- 296 (347)
T 3hfq_A 234 ADYTAHNGAAAIRLSHDGHFLYVS-NRGYNTLAVFAVTADGHLTLIQQIS--------TE----GDFPRDFD-LDPT--- 296 (347)
T ss_dssp TTCCSCCEEEEEEECTTSCEEEEE-EETTTEEEEEEECGGGCEEEEEEEE--------CS----SSCCCEEE-ECTT---
T ss_pred CCCCCCCcceeEEECCCCCEEEEE-eCCCCEEEEEEECCCCcEEEeEEEe--------cC----CCCcCeEE-ECCC---
Confidence 11 11 8999999987664 445799999999733 3344443 22 22355676 9994
Q ss_pred CceEEEEec-CCCcEEEEEcC
Q 024245 220 GFVNVLAGY-EDGSILVWDIR 239 (270)
Q Consensus 220 g~~~l~~~~-~dg~i~vwd~~ 239 (270)
|+ +|++++ .++.|.+|++.
T Consensus 297 g~-~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 297 EA-FVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SS-EEEEEETTTTEEEEEEEC
T ss_pred CC-EEEEEEcCCCcEEEEEEe
Confidence 55 565555 55899999554
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=3.3e-16 Score=134.17 Aligned_cols=229 Identities=8% Similarity=-0.059 Sum_probs=139.4
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCC-c--ceEEEEEeeCCCCCEEEEEeCC---------
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-H--GIVSVATGPSIGLNKVISQGRD--------- 85 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~--~v~~~~~~~~~~~~~l~s~~~d--------- 85 (270)
......++|+|+|++++++ |+.|++||+.++++...+..+... . ....++|+| ||++|+.++.+
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC--CCCEEEEEECCeeeEEEccc
Confidence 3446689999999999886 899999999999988777766531 1 124488999 99999988876
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCC-------------
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS------------- 152 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 152 (270)
+.+.+||+.+++... +.. .........+++++... .......+.+++...++..+....++.
T Consensus 92 ~~~~~~d~~~~~~~~--l~~-~~~~~~~~~~SPdG~~l--a~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT--EER-IPNNTQWVTWSPVGHKL--AYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEEEEETTTTEECC--SSC-CCTTEEEEEECSSTTCE--EEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred eEEEEEECCCCcEEE--ccc-CCCcceeeEECCCCCEE--EEEECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence 566799999987543 211 11122222233332222 222334455566666554443333321
Q ss_pred --------CeEecCCCCeEEEEecC----------------------------------CCceEEEEeCCC---cc--ee
Q 024245 153 --------KDDVPAEGPKYMAVAGE----------------------------------QLSEVEIWDLNT---AE--RC 185 (270)
Q Consensus 153 --------~~~~s~~~~~~~~~~~~----------------------------------~d~~i~iwd~~~---~~--~~ 185 (270)
.+.|||||+.++.++.. ....|++||+.+ ++ ..
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 17799999987654311 012578888887 63 22
Q ss_pred eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe----cCCCcEEEEEcCCCCc----c--eeee--eccCC
Q 024245 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG----YEDGSILVWDIRNPGI----P--LTAM--KVHLE 253 (270)
Q Consensus 186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~----~~dg~i~vwd~~~~~~----~--~~~~--~~~~~ 253 (270)
..+..+ .........+..+. |+| ||+ .++.. +.+..|++||+.+ ++ + +..+ ..|..
T Consensus 247 ~~l~~~------~~~~~~~~~~~~~~-wsp---dg~-~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~~~~l~~~~~~~ 314 (740)
T 4a5s_A 247 IQITAP------ASMLIGDHYLCDVT-WAT---QER-ISLQWLRRIQNYSVMDICDYDE-SSGRWNCLVARQHIEMSTTG 314 (740)
T ss_dssp EEECCC------HHHHTSCEEEEEEE-EEE---TTE-EEEEEEESSTTEEEEEEEEEET-TTTEEEECGGGCEEEECSSS
T ss_pred EEecCC------ccCCCCCeEEEEEE-EeC---CCe-EEEEEeCCCCCEEEEEEEECCC-CccccceeEEEEeeeccCCc
Confidence 233210 00001244677887 999 465 44443 2334799999998 54 1 2222 45666
Q ss_pred Cee-----EEEeecCCCce
Q 024245 254 PGL-----ECSMWRNPITM 267 (270)
Q Consensus 254 ~v~-----~~~~s~~g~~l 267 (270)
.|. ..+|+|||+.|
T Consensus 315 ~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 315 WVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp CSSSSSCCCCEECTTSSEE
T ss_pred eEccCcCCCceEcCCCCEE
Confidence 655 78999999853
No 160
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.73 E-value=2.7e-16 Score=139.41 Aligned_cols=218 Identities=11% Similarity=0.061 Sum_probs=147.4
Q ss_pred cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
..+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..+. .+..++|+| +|+.|+.+ .++.|.+
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~Sp--DG~~la~~-~~~~i~~ 269 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNT--DGRRILFS-KGGSIYI 269 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEE--SSSCEEEE-ETTEEEE
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcC--CCCEEEEE-eCCEEEE
Confidence 445789999999999998 6777888899999998753 34444555443 366789999 99988887 4889999
Q ss_pred EEccCCccCCCCccceecc-------------cceEEEEe-eccCCccceecCCCCceEEEeccCceeeeccCCCCC---
Q 024245 91 WDIENGGLSSNPSLTIKTN-------------SYHFCKLS-LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--- 153 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 153 (270)
||+...... .+... ......++ ..+... ..........|+...+.... +..+..
T Consensus 270 ~d~~~~~l~-----~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~l--a~~~~~~i~~~~~~~~~~~~--~~~~~~~~~ 340 (1045)
T 1k32_A 270 FNPDTEKIE-----KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI--AFVSRGQAFIQDVSGTYVLK--VPEPLRIRY 340 (1045)
T ss_dssp ECTTTCCEE-----ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCE--EEEETTEEEEECTTSSBEEE--CSCCSCEEE
T ss_pred ecCCceEee-----eeccCcccccccccccccccceeeecCCCCCEE--EEEEcCEEEEEcCCCCceEE--ccCCCcceE
Confidence 998443221 11111 12222333 322222 12223334455555554332 222322
Q ss_pred --eEecCCCCeEEEEecCCCceEE-EEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245 154 --DDVPAEGPKYMAVAGEQLSEVE-IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (270)
Q Consensus 154 --~~~s~~~~~~~~~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d 230 (270)
++|+ +|+.++.+ +. ++.+. +||+..++.. .+. +| ...+..++ |+|+ |+ +|++++.+
T Consensus 341 ~~~~~s-dg~~l~~~-s~-~~~l~~~~d~~~~~~~-~l~--------~~----~~~~~~~~-~SpD---G~-~la~~~~~ 399 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHG-TR-EGDFLGIYDYRTGKAE-KFE--------EN----LGNVFAMG-VDRN---GK-FAVVANDR 399 (1045)
T ss_dssp EEECSS-SEEEEEEE-ET-TEEEEEEEETTTCCEE-ECC--------CC----CCSEEEEE-ECTT---SS-EEEEEETT
T ss_pred EeeeEc-CCCeEEEE-EC-CCceEEEEECCCCCce-Eec--------CC----ccceeeeE-ECCC---CC-EEEEECCC
Confidence 7899 88776653 33 67888 9999876543 333 23 23567777 9995 55 89999999
Q ss_pred CcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 231 GSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 231 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+.|++||+.+ ++....+.+|...+.+++|||||++|
T Consensus 400 ~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~l 435 (1045)
T 1k32_A 400 FEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFI 435 (1045)
T ss_dssp SEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred CeEEEEECCC-CceEEeccCCCCCccceEECCCCCeE
Confidence 9999999998 77777777899999999999999976
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.70 E-value=8.9e-16 Score=120.77 Aligned_cols=237 Identities=9% Similarity=0.011 Sum_probs=132.4
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCC-CCceeEEEeecCCCcceEEEEEeeCCCCCE--EEEEe------------
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNK--VISQG------------ 83 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~------------ 83 (270)
..+..++|+|+|++|++++.+ .|.+|++. +++.......... +.+..++|+| +|++ +++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADT--NTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECC--CCCEEEEEEecCCcceeccceee
Confidence 467889999999999998888 89999997 7766544332111 2255689999 9884 44553
Q ss_pred -CCCcEEEEEccC-CccCCCCcccee-cccceEEEEeeccCCccceec--CCCCceEEEec-cCceee-eccC----CCC
Q 024245 84 -RDGTVKCWDIEN-GGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQ--ANEPKDCYERE-VGETVD-TDSL----CDS 152 (270)
Q Consensus 84 -~d~~i~~wd~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~-~~~~----~~~ 152 (270)
.++.+.+|++.. ++... .+.... ........+.+.......... ....+.+|++. +++... .... +..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~ 194 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEK-NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH 194 (365)
T ss_dssp SSCCEEEEEEECTTCCEEE-EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred cCCceEEEEccCCCCcCcc-eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCC
Confidence 689999999974 44321 011110 011122222222222212222 23456668887 554321 1121 111
Q ss_pred C--eEecCCCCeEEEEecCCCceEEEEeCC--Ccceee---eeccCcCCCCCCcccC--CCceeeeeee-cCCCCCCCce
Q 024245 153 K--DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAERCT---RLHQNSCGGSPNFSSK--GRGMCMAVQA-YLPSKSQGFV 222 (270)
Q Consensus 153 ~--~~~s~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~---~~~~~~~~~~~~h~~~--~~~~~~~~~~-~~p~~~~g~~ 222 (270)
. ++|+|+|+++++ ++..++.|.+|++. +++... .+..-. ....+|... ....+..+ + |+| ||+
T Consensus 195 p~~~~~spdg~~l~v-~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i-~~~sp---dG~- 267 (365)
T 1jof_A 195 PRWVAMHPTGNYLYA-LMEAGNRICEYVIDPATHMPVYTHHSFPLIP-PGIPDRDPETGKGLYRADV-CALTF---SGK- 267 (365)
T ss_dssp EEEEEECTTSSEEEE-EETTTTEEEEEEECTTTCCEEEEEEEEESSC-TTCCCBCTTTSSBSEEEEE-EEECT---TSS-
T ss_pred CCEeEECCCCCEEEE-EECCCCeEEEEEEeCCCCcEEEccceEEcCC-CCcCCcccccccccccccE-EEECC---CCC-
Confidence 2 899999987765 45457899999765 455421 222100 000011000 00023333 5 888 466
Q ss_pred EEEEecC-CC-----cEEEEEcCCCCccee---eeeccCCCeeEEEeec---CCCce
Q 024245 223 NVLAGYE-DG-----SILVWDIRNPGIPLT---AMKVHLEPGLECSMWR---NPITM 267 (270)
Q Consensus 223 ~l~~~~~-dg-----~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~s~---~g~~l 267 (270)
+|++++. ++ .|.+|++...++... ....+...+..++|+| ||++|
T Consensus 268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l 324 (365)
T 1jof_A 268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence 5555543 22 899999973255433 2333555678899999 78875
No 162
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=2.5e-14 Score=110.92 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=143.9
Q ss_pred cccEEEEEEeCCCCEEEEecCC------------------------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeC
Q 024245 18 RASVTDVCFHQTKPILFAGTTG------------------------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 73 (270)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+..+.... -.....++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~p~gia~d~- 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL-FYLPHGLSIDT- 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT-CSSEEEEEECT-
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc-cCCceEEEECC-
Confidence 4679999999999999888777 479999998888876554221 14589999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCccCCCCcccee---------cccceEEEEeeccCCccceecC---CCCceEEEeccC
Q 024245 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIK---------TNSYHFCKLSLVKEPYANAKQA---NEPKDCYEREVG 141 (270)
Q Consensus 74 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 141 (270)
+|+++++...++.|++||...... .+..+. ........+.+.......+... ...+..|+ ..+
T Consensus 101 -~g~l~v~d~~~~~v~~~~~~g~~~---~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 101 -DGNYWVTDVALHQVFKLDPHSKEG---PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp -TSCEEEEETTTTEEEEECTTCSSC---CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred -CCCEEEEECCCCEEEEEeCCCCeE---EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 989888888899999999865421 122221 1111223334433112222222 23334444 233
Q ss_pred ceeeecc-CC--------C----CCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceee
Q 024245 142 ETVDTDS-LC--------D----SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM 208 (270)
Q Consensus 142 ~~~~~~~-~~--------~----~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 208 (270)
..+.... .+ + ..++++|++..+++ +...++.|++||..+++.+..+... .+ ...+.
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v-~d~~~~~I~~~~~~~G~~~~~~~~~------~~----~~~~~ 244 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV-ADRENGRIQCFKTDTKEFVREIKHA------SF----GRNVF 244 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE-EETTTTEEEEEETTTCCEEEEECCT------TT----TTCEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE-EECCCCEEEEEECCCCcEEEEEecc------cc----CCCcc
Confidence 3222111 11 1 11999999556666 4555789999999989988888621 11 23455
Q ss_pred eeeecCCCC---CCCceEEEEecCCCcEEEEEcCCCCcceeeee---ccCCCeeEEEeecCCCc
Q 024245 209 AVQAYLPSK---SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPGLECSMWRNPIT 266 (270)
Q Consensus 209 ~~~~~~p~~---~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~ 266 (270)
.++ |+|.. .+|. .+++...+..|++||..+ ++.+..+. ++...+.+|+++|+|.+
T Consensus 245 ~~~-~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~~p~~ia~~~dG~l 305 (329)
T 3fvz_A 245 AIS-YIPGFLFAVNGK-PYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHFDMPHDIVASEDGTV 305 (329)
T ss_dssp EEE-EETTEEEEEECC-CCTTCSCCCCEEEEETTT-CCEEEEECCSSSCCSSEEEEEECTTSEE
T ss_pred eee-ecCCEEEEeCCC-EEeccCCCcEEEEEEcCC-CeEEEEEcCCCCccCCeeEEEECCCCCE
Confidence 666 77710 0121 233334456899999998 78777773 56677999999999954
No 163
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=2e-14 Score=111.52 Aligned_cols=237 Identities=8% Similarity=0.020 Sum_probs=141.1
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC----C
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----G 86 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----~ 86 (270)
...+.++...+.+++|+++|++++++..++.|.+||..+++.......+. ..+.+++++| +++++++...+ +
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~~--dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHK--DGRLFVCYLGDFKSTG 112 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECT--TSCEEEEECTTSSSCC
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC--CCcceEEECC--CCcEEEEeCCCCCCCc
Confidence 34455666778999999999988888889999999998877665443344 5599999999 88887777666 6
Q ss_pred cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-----CCceEEEecc--Cceeee--ccCCCCCeEec
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-----EPKDCYEREV--GETVDT--DSLCDSKDDVP 157 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~--~~~~~~~~~~s 157 (270)
.|.+||..++.... .............+.+............ ....+|.+.. ++.... .......++|+
T Consensus 113 ~i~~~d~~~~~~~~--~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 190 (333)
T 2dg1_A 113 GIFAATENGDNLQD--IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALS 190 (333)
T ss_dssp EEEEECTTSCSCEE--EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC
T ss_pred eEEEEeCCCCEEEE--EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEEC
Confidence 89999998775421 1110011112222333322221111111 1234444432 222111 11111128999
Q ss_pred CCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245 158 AEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (270)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw 236 (270)
|+++.++++ ...++.|.+||+.+ +..+..+.... ............++ +++ +|+ ++++...++.|.+|
T Consensus 191 ~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~~~-----~~~~~~~~~~~~i~-~d~---~G~-l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 191 TDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGATI-----PYYFTGHEGPDSCC-IDS---DDN-LYVAMYGQGRVLVF 259 (333)
T ss_dssp TTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEEEE-----EEECCSSSEEEEEE-EBT---TCC-EEEEEETTTEEEEE
T ss_pred CCCCEEEEE-eCCCCeEEEEEecCCCcCcccccceE-----EEecCCCCCCCceE-ECC---CCC-EEEEEcCCCEEEEE
Confidence 999877664 34468999999964 33332221000 00000012445566 887 455 66676778899999
Q ss_pred EcCCCCcceeeeeccCC------CeeEEEeecCCCc
Q 024245 237 DIRNPGIPLTAMKVHLE------PGLECSMWRNPIT 266 (270)
Q Consensus 237 d~~~~~~~~~~~~~~~~------~v~~~~~s~~g~~ 266 (270)
|.. ++.+..+..+.. .+.+++|+||+..
T Consensus 260 d~~--g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 260 NKR--GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ 293 (333)
T ss_dssp CTT--SCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred CCC--CCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence 984 566666654432 6899999999754
No 164
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=3.2e-14 Score=108.59 Aligned_cols=225 Identities=9% Similarity=-0.020 Sum_probs=140.9
Q ss_pred cccccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.+..+..+.....+++|+|+|+ +++++..++.|..||..++ ...+..+. ..+.+++++| +|+++++...++.|
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~l~~~~--dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS--HHQNGHCLNK--QGHLIACSHGLRRL 92 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC--SSEEEEEECT--TCCEEEEETTTTEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC--CCcceeeECC--CCcEEEEecCCCeE
Confidence 3455556677889999999998 7888888999999999877 55665555 5589999999 98888877777899
Q ss_pred EEEEccCCccCCCCccceecccc--eEEEEeeccCCccceec----------------CCCCceEEEeccCceeeeccCC
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQ----------------ANEPKDCYEREVGETVDTDSLC 150 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 150 (270)
.+||..+++... +........ ....+.+.......... ......+|.+.....+......
T Consensus 93 ~~~d~~~g~~~~--~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~ 170 (296)
T 3e5z_A 93 ERQREPGGEWES--IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRD 170 (296)
T ss_dssp EEECSTTCCEEE--EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECC
T ss_pred EEEcCCCCcEEE--EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecC
Confidence 999998776422 111100000 01112222211111110 0012355555443222222221
Q ss_pred CCC---eEecCCCCeEEEEecCCCceEEEEeCC-Ccce---eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245 151 DSK---DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (270)
Q Consensus 151 ~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~ 223 (270)
... ++|+|+++.+ + +...++.|.+||+. +++. ...+. .+ ...+..++ +.+ +|+ +
T Consensus 171 ~~~~~gi~~s~dg~~l-v-~~~~~~~i~~~~~~~~g~~~~~~~~~~--------~~----~~~p~~i~-~d~---~G~-l 231 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLL-V-SDTGDNATHRYCLNARGETEYQGVHFT--------VE----PGKTDGLR-VDA---GGL-I 231 (296)
T ss_dssp CSSEEEEEECTTSCEE-E-EETTTTEEEEEEECSSSCEEEEEEEEC--------CS----SSCCCSEE-EBT---TSC-E
T ss_pred CCCCccEEECCCCCEE-E-EeCCCCeEEEEEECCCCcCcCCCeEee--------CC----CCCCCeEE-ECC---CCC-E
Confidence 111 9999999876 4 45567899999987 4544 22331 11 22344565 887 465 4
Q ss_pred EEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEe-ecCCCc
Q 024245 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSM-WRNPIT 266 (270)
Q Consensus 224 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~ 266 (270)
+++. ++.|.+||.. ++.+..+..+.. +++++| +|++..
T Consensus 232 ~v~~--~~~v~~~~~~--g~~~~~~~~~~~-~~~~~f~~~d~~~ 270 (296)
T 3e5z_A 232 WASA--GDGVHVLTPD--GDELGRVLTPQT-TSNLCFGGPEGRT 270 (296)
T ss_dssp EEEE--TTEEEEECTT--SCEEEEEECSSC-CCEEEEESTTSCE
T ss_pred EEEc--CCeEEEECCC--CCEEEEEECCCC-ceeEEEECCCCCE
Confidence 4444 7899999986 677777877766 999999 478764
No 165
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.68 E-value=2.2e-14 Score=112.56 Aligned_cols=184 Identities=11% Similarity=0.108 Sum_probs=113.9
Q ss_pred cccEEEEEEeCCCCEEEE-ecCCCcEEEEeCCCCce------e------EEEeecCCCcceEEEEEeeCCCCCEEEEEe-
Q 024245 18 RASVTDVCFHQTKPILFA-GTTGGELRIWDTVQHRT------V------SSSWVHSAAHGIVSVATGPSIGLNKVISQG- 83 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s-~~~dg~i~vwd~~~~~~------~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~- 83 (270)
...+.+++|+|+|++|++ ...++.|.+|++..... + ........ ..+..++|+| +|+++++++
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~sp--dg~~l~v~~~ 230 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG-SGPRHLIFNS--DGKFAYLINE 230 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT-CCEEEEEECT--TSSEEEEEET
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC-CCCeEEEEcC--CCCEEEEEcC
Confidence 345789999999996655 44588999999875431 1 12222221 4578999999 999887666
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 163 (270)
.++.|.+||+.+++... +..+....... .+...++|+|+|+++
T Consensus 231 ~~~~v~v~~~~~g~~~~--~~~~~~~~~~~-----------------------------------~~~~~i~~spdg~~l 273 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDE--IQTVAADTVNA-----------------------------------QGSGDIHLSPDGKYL 273 (361)
T ss_dssp TTCEEEEEEEETTEEEE--EEEEESCSSCC-----------------------------------CCEEEEEECTTSSEE
T ss_pred CCCeEEEEEecCCceEE--eEEEecCCCCC-----------------------------------CCcccEEECCCCCEE
Confidence 68999999998664311 11111000000 000016799999987
Q ss_pred EEEecCC-CceEEEEeCC--Ccc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCCcEEEEE
Q 024245 164 MAVAGEQ-LSEVEIWDLN--TAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWD 237 (270)
Q Consensus 164 ~~~~~~~-d~~i~iwd~~--~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~i~vwd 237 (270)
++ +... ++.|.+|++. +++ .+..+. . ...+..++ |+|+ |+ +|++++ .++.|.+|+
T Consensus 274 ~v-~~~~~~~~i~v~~~~~~~g~~~~~~~~~--------~-----g~~~~~~~-~spd---g~-~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 274 YA-SNRLKADGVAIFKVDETNGTLTKVGYQL--------T-----GIHPRNFI-ITPN---GK-YLLVACRDTNVIQIFE 334 (361)
T ss_dssp EE-EECSSSCEEEEEEECTTTCCEEEEEEEE--------C-----SSCCCEEE-ECTT---SC-EEEEEETTTTEEEEEE
T ss_pred EE-ECCCCCCEEEEEEEcCCCCcEEEeeEec--------C-----CCCCceEE-ECCC---CC-EEEEEECCCCCEEEEE
Confidence 65 4444 6899999986 344 333333 1 12355676 9994 65 555555 778999976
Q ss_pred cC--CCCcceeee-eccCCCeeEEEee
Q 024245 238 IR--NPGIPLTAM-KVHLEPGLECSMW 261 (270)
Q Consensus 238 ~~--~~~~~~~~~-~~~~~~v~~~~~s 261 (270)
+. + ++..... ..+...+.+++|.
T Consensus 335 ~d~~~-g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 335 RDQAT-GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ECTTT-CCEEECSCCEECSSEEEEEEE
T ss_pred EECCC-CcEeecceeeeCCCCeEEEEc
Confidence 54 4 4433332 2244678999986
No 166
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=2.9e-14 Score=121.68 Aligned_cols=231 Identities=10% Similarity=0.017 Sum_probs=141.9
Q ss_pred cccccEEEEEEeCCCCEEEEecCCC-----cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc---
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT--- 87 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~--- 87 (270)
+|...+..++|||||++||.++.++ .|++||+.+++.+.....+ ..+..++|+| ||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~---~~~~~~~wsp--Dg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTH--DGKGMFYNAYPQQDGK 196 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECT--TSSEEEEEECCCCSSC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC---cccceEEEEe--CCCEEEEEEECCcccc
Confidence 4555789999999999988765433 8999999999877643322 2267899999 9999998887766
Q ss_pred -------------EEEEEccCCccCCCCccceecccceEE--EEeeccCCccceecC----CCCceEEEecc------Cc
Q 024245 88 -------------VKCWDIENGGLSSNPSLTIKTNSYHFC--KLSLVKEPYANAKQA----NEPKDCYEREV------GE 142 (270)
Q Consensus 88 -------------i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~ 142 (270)
|.+|++.++......+.....+..... .++.++......... .....++++.. +.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 999999887532111112211222122 222222211111111 22344566665 32
Q ss_pred eeeeccCCCCC---eEecCCCCeEEEEecC--CCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245 143 TVDTDSLCDSK---DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (270)
Q Consensus 143 ~~~~~~~~~~~---~~~s~~~~~~~~~~~~--~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p 215 (270)
.....+..+.. ..|+++|+.+++.+.. .++.|.+||+.++.. ...+. .|.. ...+..+. |.+
T Consensus 277 ~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~--~~~~~~~~-~~~ 345 (710)
T 2xdw_A 277 LKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--------PEHE--KDVLEWVA-CVR 345 (710)
T ss_dssp CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--------CCCS--SCEEEEEE-EET
T ss_pred cceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--------CCCC--CCeEEEEE-EEc
Confidence 11222222222 5688999988775542 134799999987642 34444 2211 12455566 775
Q ss_pred CCCCCceEEEEecCCCc--EEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 216 SKSQGFVNVLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 216 ~~~~g~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
++. ++++...|+. |++||+.+ ++.+..+..+...+..++++|++..|
T Consensus 346 ---~~~-lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v~~~~~s~d~~~l 394 (710)
T 2xdw_A 346 ---SNF-LVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSVVGYSGQKKDTEI 394 (710)
T ss_dssp ---TTE-EEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEEEEEECCTTCSEE
T ss_pred ---CCE-EEEEEEECCEEEEEEEECCC-CCEEEecCCCCceEEEEecCCCCCEE
Confidence 344 8888888885 56667756 66677787777788899999988643
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=1e-14 Score=115.54 Aligned_cols=234 Identities=11% Similarity=-0.009 Sum_probs=133.6
Q ss_pred cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEE--eeCCCCCEEEEE-----
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT--GPSIGLNKVISQ----- 82 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~s~----- 82 (270)
..+...++...+..+.|+|||+.|+.++.++.|++||+.+++....+..+. ..+....| +| ++.+++..
T Consensus 72 ~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~--dg~~l~~~~~~~~ 147 (388)
T 3pe7_A 72 ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPA--EWVGYGTWVANS--DCTKLVGIEIRRE 147 (388)
T ss_dssp EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECT--TSSEEEEEEEEGG
T ss_pred eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechh--hcccccceeECC--CCCeeccccccCc
Confidence 334445565555677899999999999999999999999998777666555 33444444 67 88887742
Q ss_pred -----------------eCCCcEEEEEccCCccCCCCccceecccceEEEEee-ccCCccceecCC---CCceEEEe--c
Q 024245 83 -----------------GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-VKEPYANAKQAN---EPKDCYER--E 139 (270)
Q Consensus 83 -----------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~--~ 139 (270)
..+..|.+||+.+++... +. ..........++. ............ ....+|.+ .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~--l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (388)
T 3pe7_A 148 DWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV--IL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED 224 (388)
T ss_dssp GCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE--EE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred ccccccccchhhhhhccCCcceEEEEECCCCceEE--ee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 234679999999876422 11 1111112222222 221111111111 12244443 3
Q ss_pred cCceeeeccCCCC--C---eEecCCCCeEEEEecCCC---ceEEEEeCCCcceee--eeccCcCCCCCCcccCCCceeee
Q 024245 140 VGETVDTDSLCDS--K---DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCT--RLHQNSCGGSPNFSSKGRGMCMA 209 (270)
Q Consensus 140 ~~~~~~~~~~~~~--~---~~~s~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~--~~~~~~~~~~~~h~~~~~~~~~~ 209 (270)
... ......... . .+|+|||+.++.++...+ ..|++||+.+++... .+. ++.. .......
T Consensus 225 ~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--------~~~~-~~~~~~~ 294 (388)
T 3pe7_A 225 GTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP--------ACSH-LMSNYDG 294 (388)
T ss_dssp SCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC--------CEEE-EEECTTS
T ss_pred CCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC--------Ccee-eeecCCC
Confidence 332 222222221 1 689999998765443222 249999999887433 222 2100 0000112
Q ss_pred eeecCCCCCCCceEEEEe---------cCCCcEEEEEcCCCCcceeeeeccCC-----------CeeEEEeecCCCce
Q 024245 210 VQAYLPSKSQGFVNVLAG---------YEDGSILVWDIRNPGIPLTAMKVHLE-----------PGLECSMWRNPITM 267 (270)
Q Consensus 210 ~~~~~p~~~~g~~~l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l 267 (270)
.. |+|+ |+ .|+.. ..+..|++||+.+ ++. ..+..+.. .+.+++|+|||+.|
T Consensus 295 ~~-~spd---g~-~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l 365 (388)
T 3pe7_A 295 SL-MVGD---GS-DAPVDVQDDSGYKIENDPFLYVFNMKN-GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQI 365 (388)
T ss_dssp SE-EEEE---EC-CC------------CCCCEEEEEETTT-TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred Ce-EccC---CC-cceeEeeeccccccCCCCEEEEEeccC-Cce-EEeccccCcccccccccccCCCCccCCCCCCEE
Confidence 24 8884 54 44432 4567899999987 543 45555555 57889999999875
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=2.4e-15 Score=119.27 Aligned_cols=232 Identities=9% Similarity=-0.033 Sum_probs=130.1
Q ss_pred Cccccccccccc-----EEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245 9 DPVAVLRGHRAS-----VTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 9 ~~~~~~~~h~~~-----v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (270)
+.+..+..+... +..++|+|+|++|+..... ..|.+||+.+++......... .....+.|+| +|+.|+
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~sp--dg~~l~ 96 (396)
T 3c5m_A 21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--DNTFGGFIST--DERAFF 96 (396)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--BCTTTCEECT--TSSEEE
T ss_pred cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--CccccceECC--CCCEEE
Confidence 344555544333 7788999999988766443 478889998877654433332 2233478999 999999
Q ss_pred EEeCCCcEEEEEccCCccCCCCccceecccceE-EEEe--------------eccCCcccee--------cCCCCceEEE
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF-CKLS--------------LVKEPYANAK--------QANEPKDCYE 137 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~--------~~~~~~~~~~ 137 (270)
.++.++.|.+||+.+++... +...+...... ..+. ....+....+ ........++
T Consensus 97 ~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 97 YVKNELNLMKVDLETLEEQV--IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp EEETTTEEEEEETTTCCEEE--EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred EEEcCCcEEEEECCCCCcEE--EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEE
Confidence 99999999999998876422 22111110000 0000 1112221111 1122334466
Q ss_pred eccCceeeeccCCCCC---eEecC-CCCeEEEEecCCC----ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeee
Q 024245 138 REVGETVDTDSLCDSK---DDVPA-EGPKYMAVAGEQL----SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA 209 (270)
Q Consensus 138 ~~~~~~~~~~~~~~~~---~~~s~-~~~~~~~~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 209 (270)
+..++..... ..... +.|+| ++..+++++.... ..|.+||+..++. ..+. .+. ....+..
T Consensus 175 ~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--------~~~--~~~~~~~ 242 (396)
T 3c5m_A 175 IETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIK--------EHA--EGESCTH 242 (396)
T ss_dssp TTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESS--------CCC--TTEEEEE
T ss_pred CCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEee--------ccC--CCccccc
Confidence 6665543322 11111 78999 7876665443222 4688999875543 3333 110 1224556
Q ss_pred eeecCCCCCCCceEEEEecCC-----CcEEEEEcCCCCcceeeeeccCCCeeEEEeec-CCCce
Q 024245 210 VQAYLPSKSQGFVNVLAGYED-----GSILVWDIRNPGIPLTAMKVHLEPGLECSMWR-NPITM 267 (270)
Q Consensus 210 ~~~~~p~~~~g~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l 267 (270)
+. |+|+ |+ +|+.++.+ +.|++||+.+ ++....... . ... +.|+| ||++|
T Consensus 243 ~~-~spd---g~-~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~-~-~~~-~~~s~~dg~~l 297 (396)
T 3c5m_A 243 EF-WIPD---GS-AMAYVSYFKGQTDRVIYKANPET-LENEEVMVM-P-PCS-HLMSNFDGSLM 297 (396)
T ss_dssp EE-ECTT---SS-CEEEEEEETTTCCEEEEEECTTT-CCEEEEEEC-C-SEE-EEEECSSSSEE
T ss_pred eE-ECCC---CC-EEEEEecCCCCccceEEEEECCC-CCeEEeeeC-C-CCC-CCccCCCCceE
Confidence 66 9995 55 55554333 4499999987 543332221 1 233 89999 99875
No 169
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.62 E-value=3e-14 Score=118.86 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=116.8
Q ss_pred EEEEEEeCCCC--EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC----CcEEEEEcc
Q 024245 21 VTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----GTVKCWDIE 94 (270)
Q Consensus 21 v~~~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~ 94 (270)
+...+|+|+|+ .+++++.+ .+.+||+.+++.......+ . .+++|+| +|++|++++.+ +.|.+||+.
T Consensus 112 ~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~---~--~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~ 183 (582)
T 3o4h_A 112 MRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLP---G--FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLS 183 (582)
T ss_dssp BEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEES---S--CEEEEEE--ETTEEEEEEEEETTEEEEEEEETT
T ss_pred ceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCC---C--ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCC
Confidence 34568888775 45555555 4669999988766554433 2 7899999 99999988777 789999998
Q ss_pred CCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc--
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS-- 172 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~-- 172 (270)
+++.. .+..+..... . .+|||||+.++ ++..++
T Consensus 184 ~g~~~-----~l~~~~~~~~--~------------------------------------~~~SpDG~~l~--~~~~~~~~ 218 (582)
T 3o4h_A 184 SGGLR-----VFDSGEGSFS--S------------------------------------ASISPGMKVTA--GLETAREA 218 (582)
T ss_dssp TCCCE-----EECCSSCEEE--E------------------------------------EEECTTSCEEE--EEECSSCE
T ss_pred CCCce-----EeecCCCccc--c------------------------------------ceECCCCCEEE--EccCCCee
Confidence 87642 2222211111 1 46999998766 444577
Q ss_pred eEEEEeCCCcceeeeeccCcCCCCCCcccCCCce----eeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM----CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~----~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
.|++||+.+++.. .+. +|....... ..... |+|+ |. ++++++.||.+++|++ ++...
T Consensus 219 ~i~~~d~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~-~spd---g~-~~~~~~~~g~~~l~~~---g~~~~-- 279 (582)
T 3o4h_A 219 RLVTVDPRDGSVE-DLE--------LPSKDFSSYRPTAITWLG-YLPD---GR-LAVVARREGRSAVFID---GERVE-- 279 (582)
T ss_dssp EEEEECTTTCCEE-ECC--------CSCSHHHHHCCSEEEEEE-ECTT---SC-EEEEEEETTEEEEEET---TEEEC--
T ss_pred EEEEEcCCCCcEE-Ecc--------CCCcChhhhhhcccccee-EcCC---Cc-EEEEEEcCCcEEEEEE---CCeec--
Confidence 8999999988876 555 443211111 11122 8984 54 9999999999999999 34333
Q ss_pred eccCCCeeEEEeecCCCce
Q 024245 249 KVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 249 ~~~~~~v~~~~~s~~g~~l 267 (270)
...+.|.+++|+ ||+++
T Consensus 280 -~~~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 280 -APQGNHGRVVLW-RGKLV 296 (582)
T ss_dssp -CCSSEEEEEEEE-TTEEE
T ss_pred -cCCCceEEEEec-CCEEE
Confidence 234678899999 88765
No 170
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.6e-14 Score=123.44 Aligned_cols=83 Identities=8% Similarity=0.069 Sum_probs=63.4
Q ss_pred cccccccccc---cEEEEEEeCCCCEEEEecC---------CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCC
Q 024245 10 PVAVLRGHRA---SVTDVCFHQTKPILFAGTT---------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN 77 (270)
Q Consensus 10 ~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 77 (270)
+...+.+|.. .|.+++|||||++|++++. ++.|++||+.+++.+..... . ..+..++|+| +|+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~--~~~~~~~~SP--DG~ 122 (719)
T 1z68_A 48 SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-P--RPIQYLCWSP--VGS 122 (719)
T ss_dssp EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-C--SSBCCEEECS--STT
T ss_pred EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-C--cccccceECC--CCC
Confidence 3344444443 3899999999999998876 78999999998876311111 1 3488999999 999
Q ss_pred EEEEEeCCCcEEEEEccCCcc
Q 024245 78 KVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 78 ~l~s~~~d~~i~~wd~~~~~~ 98 (270)
.|+.+. ++.|++||+.+++.
T Consensus 123 ~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 123 KLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp CEEEEE-TTEEEEESSTTSCC
T ss_pred EEEEEE-CCeEEEEeCCCCCc
Confidence 999875 78999999988764
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.57 E-value=3.7e-12 Score=96.60 Aligned_cols=222 Identities=9% Similarity=0.088 Sum_probs=134.9
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecC----CCcceEEEEEe-eCCCCCEEEEEeC-CCcEE
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS----AAHGIVSVATG-PSIGLNKVISQGR-DGTVK 89 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~-~~~~~~~l~s~~~-d~~i~ 89 (270)
++-..+.+++++++++++++...++.|.+||.. ++.+..+.... ....+..+++. + +++++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~--~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN--SGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT--TTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC--CCeEEEEcCCCCCEEE
Confidence 455679999999999988888889999999987 66665554211 11358899995 5 6566666543 88999
Q ss_pred EEEccCCccCCCCccceecc-cceEEEEeeccCCccceecC--CCCceEEEeccCceeeecc-CCCCC----eEecCCCC
Q 024245 90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDTDS-LCDSK----DDVPAEGP 161 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~----~~~s~~~~ 161 (270)
+||. +++... .+... ......+.+..... ..... ......|+.. ++.+.... ..+.. ++++++|.
T Consensus 104 ~~d~-~g~~~~----~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 104 IYNQ-YGQFVR----KFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp EECT-TSCEEE----EECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred EECC-CCcEEE----EecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC
Confidence 9994 443322 12111 11222233333222 22222 2234445532 22222211 12211 89999986
Q ss_pred eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC-cEEEEEcCC
Q 024245 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRN 240 (270)
Q Consensus 162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg-~i~vwd~~~ 240 (270)
+++ +...++.|++||.. ++.+..+.. +. .......++ ++| +|+ ++++...++ .|.+||..
T Consensus 177 -l~v-~~~~~~~i~~~~~~-g~~~~~~~~--------~g--~~~~p~~i~-~d~---~G~-l~v~~~~~~~~i~~~~~~- 237 (286)
T 1q7f_A 177 -IFI-SDNRAHCVKVFNYE-GQYLRQIGG--------EG--ITNYPIGVG-INS---NGE-ILIADNHNNFNLTIFTQD- 237 (286)
T ss_dssp -EEE-EEGGGTEEEEEETT-CCEEEEESC--------TT--TSCSEEEEE-ECT---TCC-EEEEECSSSCEEEEECTT-
T ss_pred -EEE-EECCCCEEEEEcCC-CCEEEEEcc--------CC--ccCCCcEEE-ECC---CCC-EEEEeCCCCEEEEEECCC-
Confidence 444 44457899999974 666666652 11 123456676 888 455 777777775 99999954
Q ss_pred CCcceeeeeccCC--CeeEEEeecCCCce
Q 024245 241 PGIPLTAMKVHLE--PGLECSMWRNPITM 267 (270)
Q Consensus 241 ~~~~~~~~~~~~~--~v~~~~~s~~g~~l 267 (270)
++.+..+..+.. .+.+++++|+|.++
T Consensus 238 -g~~~~~~~~~~~~~~~~~i~~~~~g~l~ 265 (286)
T 1q7f_A 238 -GQLISALESKVKHAQCFDVALMDDGSVV 265 (286)
T ss_dssp -SCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred -CCEEEEEcccCCCCcceeEEECCCCcEE
Confidence 566666665433 47799999999764
No 172
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=3e-12 Score=96.49 Aligned_cols=207 Identities=12% Similarity=0.029 Sum_probs=130.8
Q ss_pred CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (270)
Q Consensus 29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 108 (270)
.+++|++++.|+.|.+||.++++.+..+..+.. ..+.++.+.| +|++++ +.++.|..||. +++.+. .+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~p--dG~ilv--s~~~~V~~~d~-~G~~~W----~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATK--AGEILF--SYSKGAKMITR-DGRELW----NIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECT--TSCEEE--ECBSEEEEECT-TSCEEE----EEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECC--CCCEEE--eCCCCEEEECC-CCCEEE----EEcC
Confidence 457899999999999999999999999887642 2488999999 999888 44678999998 666543 3332
Q ss_pred cc-ceEEEEeeccCCccceecCCCCceEEEec-cCceeee-ccC----C----CCCeEecCCCCeEEEEecCCCceEEEE
Q 024245 109 NS-YHFCKLSLVKEPYANAKQANEPKDCYERE-VGETVDT-DSL----C----DSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (270)
Q Consensus 109 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~----~----~~~~~~s~~~~~~~~~~~~~d~~i~iw 177 (270)
.. ...................+....++.+. .++.+.. .+. . ...+++.++|..++ +...++.|..|
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv--~~~~~~~v~~~ 151 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV--PLFATSEVREI 151 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE--EETTTTEEEEE
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEE--EecCCCEEEEE
Confidence 21 12222222222211111111122333322 2322211 111 1 11177889998655 45568999999
Q ss_pred eCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC-----
Q 024245 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL----- 252 (270)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----- 252 (270)
|.. |+.+.++.. . .....+. ..| +|. +++++..++.|..+|..+ ++.+..+....
T Consensus 152 d~~-G~~~w~~~~--------~-----~~~~~~~-~~~---~g~-~~v~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 152 APN-GQLLNSVKL--------S-----GTPFSSA-FLD---NGD-CLVACGDAHCFVQLNLES-NRIVRRVNANDIEGVQ 211 (276)
T ss_dssp CTT-SCEEEEEEC--------S-----SCCCEEE-ECT---TSC-EEEECBTTSEEEEECTTT-CCEEEEEEGGGSBSCC
T ss_pred CCC-CCEEEEEEC--------C-----CCcccee-EcC---CCC-EEEEeCCCCeEEEEeCcC-CcEEEEecCCCCCCcc
Confidence 998 999998873 1 1233344 555 455 888888888999999998 88888776432
Q ss_pred -CCeeEEEeecCCCce
Q 024245 253 -EPGLECSMWRNPITM 267 (270)
Q Consensus 253 -~~v~~~~~s~~g~~l 267 (270)
..+..++..++|.++
T Consensus 212 l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLY 227 (276)
T ss_dssp CSEEEEEEECTTSCEE
T ss_pred ccccccceEcCCCCEE
Confidence 125677777777653
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.56 E-value=5.3e-13 Score=113.00 Aligned_cols=233 Identities=10% Similarity=0.004 Sum_probs=135.2
Q ss_pred CcccccccccccEEEEEEeCCCCEEEEe--cCCCcEEEEeCCCCceeEEEeecCCCcceE---------EEEEe--eCCC
Q 024245 9 DPVAVLRGHRASVTDVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIV---------SVATG--PSIG 75 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~ 75 (270)
-....+.+|...|..++|++++.++++. +.++...||....+.....+..+. ..+. ...|+ | |
T Consensus 14 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~SP--D 89 (662)
T 3azo_A 14 IDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP--WNVRNRVFEYSGFPWAGVPRP--A 89 (662)
T ss_dssp CCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT--CCBCCCGGGTCCCCEEEECCS--S
T ss_pred CCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC--ccccccccccCCccceeeeec--C
Confidence 3456688899999999999887777777 668899999965455555565554 3355 56666 8 8
Q ss_pred CCE-EEEEeC-CCcEEEEEcc--C-CccCCCCccceec--ccceEEEEeeccCCccceecCC-------------CCceE
Q 024245 76 LNK-VISQGR-DGTVKCWDIE--N-GGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQAN-------------EPKDC 135 (270)
Q Consensus 76 ~~~-l~s~~~-d~~i~~wd~~--~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 135 (270)
|+. |+.++. +..|.+|++. + +.... +..... +.... ..+.+++++..+... .....
T Consensus 90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~--l~~~~~~~~~~~~--~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--LTPVSAVGGGLRW--ADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp SSCEEEEEBTTTCCEEEECTTSTTCCCCEE--CSCCCCSTTCEEE--EEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred CCeEEEEEECCCCeEEEEcCCCCCCCCCEe--ccCCccCCCCccc--cCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 888 765543 5566666665 2 33211 111100 11122 223333333222111 12344
Q ss_pred EEecc------Cceeeecc-CCCCC---eEecCCCCeEEEEecCC------CceEEEEeCC-Ccc--eeeeeccCcCCCC
Q 024245 136 YEREV------GETVDTDS-LCDSK---DDVPAEGPKYMAVAGEQ------LSEVEIWDLN-TAE--RCTRLHQNSCGGS 196 (270)
Q Consensus 136 ~~~~~------~~~~~~~~-~~~~~---~~~s~~~~~~~~~~~~~------d~~i~iwd~~-~~~--~~~~~~~~~~~~~ 196 (270)
|++.. ++. .... .++.. ++|||||++++.++... ...|++||+. +++ ....+..
T Consensus 166 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~------ 238 (662)
T 3azo_A 166 VPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG------ 238 (662)
T ss_dssp EETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE------
T ss_pred EECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC------
Confidence 66655 332 2222 22222 89999999877644332 2589999998 561 2333331
Q ss_pred CCcccCCCceeeeeeecCCCCCCCceEEEEecCCC--cEEEEEcCCCCcceeeeeccCCC--------eeEEEeecCCCc
Q 024245 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEP--------GLECSMWRNPIT 266 (270)
Q Consensus 197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~--------v~~~~~s~~g~~ 266 (270)
+| ...+..+. |+| ||+ ++++++.++ .|++||+.+ ++.......+... +..++|+|++.+
T Consensus 239 -~~----~~~~~~~~-~sp---dg~-l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 239 -GP----EEAIAQAE-WAP---DGS-LIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp -ET----TBCEEEEE-ECT---TSC-EEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred -CC----CceEcceE-ECC---CCe-EEEEECCCCCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCEE
Confidence 22 23566777 999 566 788888888 566666655 5544444333222 567888888876
Q ss_pred e
Q 024245 267 M 267 (270)
Q Consensus 267 l 267 (270)
+
T Consensus 308 ~ 308 (662)
T 3azo_A 308 A 308 (662)
T ss_dssp E
T ss_pred E
Confidence 4
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.56 E-value=4.4e-12 Score=104.74 Aligned_cols=226 Identities=12% Similarity=-0.012 Sum_probs=137.1
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCC--CCceeEEEeecCCCcceEEEEEe----eCCCCCEEEEEe-CCCcEEEE
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATG----PSIGLNKVISQG-RDGTVKCW 91 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~s~~-~d~~i~~w 91 (270)
..+..+.|+|||+++++++.|+.|.+||+. +++.+..+.... ....++|+ | +|+++++++ .+++|.++
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKMEGW--EDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCSTTC--TTTEEEEEEEETTEEEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccccCC--CCCEEEEEEccCCeEEEE
Confidence 356789999999999999999999999995 778887776543 36899999 7 888887665 46899999
Q ss_pred EccCCccCCCCccceeccc----------c-eEEEEeeccCCcc--ceecCCCCceEEEeccCceeee-cc-CC-CCC-e
Q 024245 92 DIENGGLSSNPSLTIKTNS----------Y-HFCKLSLVKEPYA--NAKQANEPKDCYEREVGETVDT-DS-LC-DSK-D 154 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~-~ 154 (270)
|..+.+.+. .+.... . ....+........ ......+.+.+++....+.+.. .. .+ +.. +
T Consensus 272 D~~t~~~~~----~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~ 347 (567)
T 1qks_A 272 DGETLEPKK----IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 347 (567)
T ss_dssp ETTTCCEEE----EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred ECCCCcEEE----EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCc
Confidence 988876543 222110 0 1111111111111 1111223333344433321111 11 11 111 7
Q ss_pred EecCCCCeEEEEecCCCceEEEEeCCCcceeeeecc-CcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCCc
Q 024245 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGS 232 (270)
Q Consensus 155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~ 232 (270)
.|+|+|+++++++. .++.|.++|+.+++.+..+.. . ...|. ..+.. - ++|+ .+. .++++. .++.
T Consensus 348 ~~~pdgr~~~va~~-~sn~V~ViD~~t~kl~~~i~vgg----~~Php--g~g~~---~-~~p~--~g~-v~~t~~~g~~~ 413 (567)
T 1qks_A 348 GLDGSHRYFITAAN-ARNKLVVIDTKEGKLVAIEDTGG----QTPHP--GRGAN---F-VHPT--FGP-VWATSHMGDDS 413 (567)
T ss_dssp EECTTSCEEEEEEG-GGTEEEEEETTTTEEEEEEECSS----SSBCC--TTCEE---E-EETT--TEE-EEEEEBSSSSE
T ss_pred eECCCCCEEEEEeC-CCCeEEEEECCCCcEEEEEeccC----cCCCC--cccee---e-ECCC--CCc-EEEeCCCCCCe
Confidence 89999998887554 468899999999988776652 0 00111 11211 1 4563 244 555553 5689
Q ss_pred EEEEEcCCC------CcceeeeeccCCCeeEEEeecCCCce
Q 024245 233 ILVWDIRNP------GIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 233 i~vwd~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
|.++|.... .+.++++......-..+..+||+++|
T Consensus 414 Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l 454 (567)
T 1qks_A 414 VALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL 454 (567)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred EEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeE
Confidence 999998862 24567776544444557889998754
No 175
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.55 E-value=2.3e-13 Score=115.83 Aligned_cols=230 Identities=10% Similarity=-0.023 Sum_probs=133.6
Q ss_pred cccccEEEEEEeCCCCEEE-----EecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc---
Q 024245 16 GHRASVTDVCFHQTKPILF-----AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT--- 87 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~-----s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~--- 87 (270)
+|...+..++|||||++|| .|+.+..|++||+.+++.+.. .+........++|+| +|+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wsp--Dg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTP--DSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECT--TSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEec--CCCEEEEEEecCCCCC
Confidence 4666799999999999998 566678999999999876511 111111126899999 9999998888776
Q ss_pred ----------EEEEEccCCccCCCCccceecccceEEE--EeeccCCccceecCC-CCceEEEeccCceeeeccCCCCC-
Q 024245 88 ----------VKCWDIENGGLSSNPSLTIKTNSYHFCK--LSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK- 153 (270)
Q Consensus 88 ----------i~~wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 153 (270)
|++|++.++......+.....+...... ++.++.......... ....+|.+.........+..+..
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 273 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA 273 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc
Confidence 9999998876322112222222222222 222222221112122 22233433221111111111211
Q ss_pred ---eEecCCCCeEEEEecC--CCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245 154 ---DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (270)
Q Consensus 154 ---~~~s~~~~~~~~~~~~--~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (270)
..+ ++|. +++.+.. .++.|.+||+.+++. ...+. .+. ....+..+. |+ ++. ++++
T Consensus 274 ~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~--~~~~l~~~~-~~----~~~-lv~~ 335 (695)
T 2bkl_A 274 KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV--------PED--SSASLLSVS-IV----GGH-LSLE 335 (695)
T ss_dssp CEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE--------CCC--SSCEEEEEE-EE----TTE-EEEE
T ss_pred eEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe--------cCC--CCCeEEEEE-EE----CCE-EEEE
Confidence 334 6777 6654431 358999999987653 23333 121 122345555 65 344 8889
Q ss_pred ecCCCcEEEEEcCCCCcceeeeecc-CCCeeEEEeecCCCce
Q 024245 227 GYEDGSILVWDIRNPGIPLTAMKVH-LEPGLECSMWRNPITM 267 (270)
Q Consensus 227 ~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l 267 (270)
...|+..+||.+...++....+..+ ...+..++++|++..|
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l 377 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDA 377 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEE
T ss_pred EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEE
Confidence 9999998888776325555666654 5677888999988654
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.55 E-value=2.5e-13 Score=115.02 Aligned_cols=186 Identities=9% Similarity=-0.012 Sum_probs=117.8
Q ss_pred ccccEEEEEEeCCCCEEEEecCC----------CcEEEEeCCC------CceeEEEe-ecCCCcceEEEEEeeCCCCCEE
Q 024245 17 HRASVTDVCFHQTKPILFAGTTG----------GELRIWDTVQ------HRTVSSSW-VHSAAHGIVSVATGPSIGLNKV 79 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~d----------g~i~vwd~~~------~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l 79 (270)
|...+..++|+|||+.|++++.+ ..|++||+.+ ++.. .+. .+. ..+..++|+| ||++|
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~~~~Sp--DG~~l 202 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAH--RFVTGPRLSP--DGRQA 202 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCS--SEECCCEECT--TSSEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCC--CcccCceECC--CCCEE
Confidence 67789999999999999998877 5899999987 5544 343 333 5588899999 99999
Q ss_pred EEEeCCC--------cEEEEEcc-CCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC
Q 024245 80 ISQGRDG--------TVKCWDIE-NGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL 149 (270)
Q Consensus 80 ~s~~~d~--------~i~~wd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (270)
+.++.++ .|.+||+. ++.... ...+... .....
T Consensus 203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~--~~~l~~~~~~~~~----------------------------------- 245 (662)
T 3azo_A 203 VWLAWDHPRMPWEGTELKTARVTEDGRFAD--TRTLLGGPEEAIA----------------------------------- 245 (662)
T ss_dssp EEEEECTTCCTTTCEEEEEEEECTTSCEEE--EEEEEEETTBCEE-----------------------------------
T ss_pred EEEECCCCCCCCCCcEEEEEEECCCCcccc--cEEeCCCCCceEc-----------------------------------
Confidence 8777553 79999998 452100 0011100 00000
Q ss_pred CCCCeEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCce-----eeeeeecCCCCCCCce
Q 024245 150 CDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM-----CMAVQAYLPSKSQGFV 222 (270)
Q Consensus 150 ~~~~~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~-----~~~~~~~~p~~~~g~~ 222 (270)
.++|+|||+ +++ +++.++ .|.+||+.+++...... ++.. .... +..+. |+| +++
T Consensus 246 ---~~~~spdg~-l~~-~~~~~~~~~l~~~~~~~~~~~~l~~--------~~~~-~~~p~w~~~~~~~~-~~~---~~~- 306 (662)
T 3azo_A 246 ---QAEWAPDGS-LIV-ATDRTGWWNLHRVDPATGAATQLCR--------REEE-FAGPLWTPGMRWFA-PLA---NGL- 306 (662)
T ss_dssp ---EEEECTTSC-EEE-EECTTSSCEEEEECTTTCCEEESSC--------CSSB-SSCCCCSTTCCSEE-ECT---TSC-
T ss_pred ---ceEECCCCe-EEE-EECCCCCeEEEEEECCCCceeeccc--------cccc-ccCccccccCceEe-EeC---CCE-
Confidence 056999998 554 445567 67777776666543333 2211 1100 23455 777 455
Q ss_pred EEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEE-EeecCC
Q 024245 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC-SMWRNP 264 (270)
Q Consensus 223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~s~~g 264 (270)
++++++. +.++||.+...+..+..+..+...+..+ +++++.
T Consensus 307 ~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~ 348 (662)
T 3azo_A 307 IAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTR 348 (662)
T ss_dssp EEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTE
T ss_pred EEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCE
Confidence 8888888 9999995443233467777777777766 544443
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=2.2e-11 Score=94.24 Aligned_cols=216 Identities=6% Similarity=-0.145 Sum_probs=133.9
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
.....+.+. ++++.++...++.|.+||..+++.+..+... .....+++++ ++...++...++.|.+||..+++.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---~~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~ 117 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---TSPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEI 117 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC---SSEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC---CCCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeE
Confidence 346778775 3455666667899999999999998888543 4488999999 875444444889999999998865
Q ss_pred CCCCccceeccc-----ceEEEEeeccCCccceec-CCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEecCC
Q 024245 99 SSNPSLTIKTNS-----YHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQ 170 (270)
Q Consensus 99 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~ 170 (270)
.. .+.... .....+.+.......... ....+..+|..+++.......+... ++++|+|+ +++++...
T Consensus 118 ~~----~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~ 192 (328)
T 3dsm_A 118 TG----YIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGG 192 (328)
T ss_dssp EE----EEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCB
T ss_pred EE----EEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECCC
Confidence 43 222111 011112222221112211 2345566787777655543333322 89999997 44433321
Q ss_pred ---------CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245 171 ---------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (270)
Q Consensus 171 ---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~ 241 (270)
.+.|.++|..+++....+.. . .......++ |+|+ ++ +|.++.. .|.+||..+
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~--------~---~g~~p~~la-~~~d---~~-~lyv~~~--~v~~~d~~t- 253 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKF--------K---LGDWPSEVQ-LNGT---RD-TLYWINN--DIWRMPVEA- 253 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEEC--------C---TTCCCEEEE-ECTT---SC-EEEEESS--SEEEEETTC-
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEec--------C---CCCCceeEE-EecC---CC-EEEEEcc--EEEEEECCC-
Confidence 27899999999887777652 1 012456676 9985 44 5555543 899999987
Q ss_pred Cccee--eeeccCCCeeEEEeecCC
Q 024245 242 GIPLT--AMKVHLEPGLECSMWRNP 264 (270)
Q Consensus 242 ~~~~~--~~~~~~~~v~~~~~s~~g 264 (270)
++... .+......+..++++|++
T Consensus 254 ~~~~~~~~~~~~~~~p~gi~vdp~~ 278 (328)
T 3dsm_A 254 DRVPVRPFLEFRDTKYYGLTVNPNN 278 (328)
T ss_dssp SSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred CceeeeeeecCCCCceEEEEEcCCC
Confidence 54321 122224578899999943
No 178
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.52 E-value=1.4e-11 Score=93.95 Aligned_cols=227 Identities=13% Similarity=0.111 Sum_probs=135.4
Q ss_pred ccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 15 RGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
..+..--.+..|+++ +.++++...++.|..||..+++. ..+.. . ..+.++++++ +++++++ . ++.|.+||.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~-~--~~~~~i~~~~--dG~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM-D--APVSSVALRQ--SGGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC-S--SCEEEEEEBT--TSSEEEE-E-TTEEEEEET
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC-C--CceEEEEECC--CCCEEEE-E-CCeEEEEEC
Confidence 334445678999994 55777777889999999987655 33332 2 5589999999 8885554 3 567999999
Q ss_pred cCCccCCCCccceecc--cceEEEEeeccCCccceecC----------CCCceEEEeccCceeeecc---CCCCCeEecC
Q 024245 94 ENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQA----------NEPKDCYEREVGETVDTDS---LCDSKDDVPA 158 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~ 158 (270)
.+++... +...... ......+.+........... .....+|.+.......... .....++|+|
T Consensus 81 ~~g~~~~--~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 81 KEQSAVV--LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL 158 (297)
T ss_dssp TTTEEEE--EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT
T ss_pred CCCcEEE--EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC
Confidence 8775422 1111111 11122222222222111110 1223455554322221111 1111299999
Q ss_pred CCCeEEEEecCCCceEEEEeC--CCccee--eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245 159 EGPKYMAVAGEQLSEVEIWDL--NTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~--~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~ 234 (270)
+++.++++ .+.++.|.+||+ .++... ..+.. . .........++ +.+ +|. +.++...++.|.
T Consensus 159 dg~~lyv~-~~~~~~i~~~~~d~~~G~~~~~~~~~~--------~-~~~~~~p~g~~-~d~---~G~-lwva~~~~~~v~ 223 (297)
T 3g4e_A 159 DHKIFYYI-DSLSYSVDAFDYDLQTGQISNRRSVYK--------L-EKEEQIPDGMC-IDA---EGK-LWVACYNGGRVI 223 (297)
T ss_dssp TSCEEEEE-EGGGTEEEEEEECTTTCCEEEEEEEEE--------C-CGGGCEEEEEE-EBT---TSC-EEEEEETTTEEE
T ss_pred CCCEEEEe-cCCCCcEEEEeccCCCCcccCcEEEEE--------C-CCCCCCCCeeE-ECC---CCC-EEEEEcCCCEEE
Confidence 99877764 445789999987 455432 11210 0 00123445566 776 465 666666778899
Q ss_pred EEEcCCCCcceeeeeccCCCeeEEEee-cCCCce
Q 024245 235 VWDIRNPGIPLTAMKVHLEPGLECSMW-RNPITM 267 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l 267 (270)
.||..+ ++.+..+..+...+++++|. ||+..|
T Consensus 224 ~~d~~t-G~~~~~i~~p~~~~t~~~f~g~d~~~L 256 (297)
T 3g4e_A 224 RLDPVT-GKRLQTVKLPVDKTTSCCFGGKNYSEM 256 (297)
T ss_dssp EECTTT-CCEEEEEECSSSBEEEEEEESGGGCEE
T ss_pred EEcCCC-ceEEEEEECCCCCceEEEEeCCCCCEE
Confidence 999988 78888888777789999999 887643
No 179
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.52 E-value=1.2e-12 Score=102.80 Aligned_cols=202 Identities=8% Similarity=-0.046 Sum_probs=115.4
Q ss_pred EEEEEEeCCCCE--EEEec-------------CCCcEEEEeCC-CCceeEEEee--cCCCcceEEEEEeeCCCCCEEEEE
Q 024245 21 VTDVCFHQTKPI--LFAGT-------------TGGELRIWDTV-QHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 21 v~~~~~s~~~~~--l~s~~-------------~dg~i~vwd~~-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
+..++|+|+|++ +++++ .++.+.+|++. +++....+.. +.....+.+++|+| +|++|+++
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~ 162 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSA 162 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEE
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEE
Confidence 455889999984 55664 68999999997 4665544432 11115589999999 99988876
Q ss_pred e-CCCcEEEEEcc-CCccCCCCcccee--cccceEEEEeeccCCccceec--CCCCceEEEec--cCcee-----eecc-
Q 024245 83 G-RDGTVKCWDIE-NGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQ--ANEPKDCYERE--VGETV-----DTDS- 148 (270)
Q Consensus 83 ~-~d~~i~~wd~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~-----~~~~- 148 (270)
. .++.|.+||+. +++... +..+. .+......+.+.......... ..+...+|++. +++.. ...+
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~--~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVEL--VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEE--EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred cCCCCEEEEEEECCCCCEEE--eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence 5 46799999998 665321 11221 111222222322222222222 23445566654 33321 1112
Q ss_pred ---CCCC--------C--eE-ecCCCCeEEEEecCCC----ceEEEEeCC-Ccceeee---eccCcCCCCCCcccCCCce
Q 024245 149 ---LCDS--------K--DD-VPAEGPKYMAVAGEQL----SEVEIWDLN-TAERCTR---LHQNSCGGSPNFSSKGRGM 206 (270)
Q Consensus 149 ---~~~~--------~--~~-~s~~~~~~~~~~~~~d----~~i~iwd~~-~~~~~~~---~~~~~~~~~~~h~~~~~~~ 206 (270)
.++. . ++ |+|||++++++....+ +.|.+|++. +++.... +. .+ ...
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~--------~~----~~~ 308 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP--------TP----TSG 308 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE--------CS----SCC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee--------cC----CCC
Confidence 1222 2 88 9999998775433222 289999996 5654331 22 11 112
Q ss_pred eeeeeecCCCCCCCceEEEEecC-CCcEEEEEcCC
Q 024245 207 CMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRN 240 (270)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~~~~-dg~i~vwd~~~ 240 (270)
...++ |+|..-||+ +|++++. ++.|.+|++..
T Consensus 309 ~~~~a-~sp~~~dg~-~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 309 GHSNA-VSPCPWSDE-WMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TTCCC-EEECTTCTT-EEEEECSSSCEEEEEEEET
T ss_pred cccce-ecCCCcCCC-EEEEEEcCCCeEEEEEEch
Confidence 33455 888100244 7777765 58999999986
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.51 E-value=5.1e-13 Score=105.89 Aligned_cols=215 Identities=10% Similarity=-0.133 Sum_probs=121.7
Q ss_pred EEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEE-------------------EEEeeCCCCCEEEEE-
Q 024245 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-------------------VATGPSIGLNKVISQ- 82 (270)
Q Consensus 23 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~l~s~- 82 (270)
.+.|+|+|++|+.++.++.|++||+.+++.......+. ..... +.|+| +++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~ 160 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDE--EWKGYGTWVANSDCTKLVGIEILKRDWQP--LTSWEKFAE 160 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCC--CCSHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc--ccCCCCCEEEeccCCccccccccccccCC--CCcceeeee
Confidence 47899999999999999999999999887666555443 21112 34566 66665543
Q ss_pred ----eCCCcEEEEEccCCccCCCCccceecccceEEEEee-ccCCccceecCC------CCceEEEeccCceeeeccCCC
Q 024245 83 ----GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-VKEPYANAKQAN------EPKDCYEREVGETVDTDSLCD 151 (270)
Q Consensus 83 ----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 151 (270)
..+..|.+||+.+++... +. ..........++. ..... .....+ .....+++..++.. ......
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~--~~-~~~~~~~~~~~sp~dg~~l-~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~ 235 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEV--IH-QDTAWLGHPIYRPFDDSTV-GFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHA 235 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEE--EE-EESSCEEEEEEETTEEEEE-EEEECSCSSSCSCCCEEEETTSCCCE-ESSCCC
T ss_pred eccCCCcceEEEEECCCCcEEe--ec-cCCcccccceECCCCCCEE-EEEecCCCCCCCceEEEEECCCCcee-EeeccC
Confidence 356689999998876432 11 1111111112222 11111 111111 12334455433322 222221
Q ss_pred -C-C---eEecCCCCeEEEEecC---CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245 152 -S-K---DDVPAEGPKYMAVAGE---QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (270)
Q Consensus 152 -~-~---~~~s~~~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~ 223 (270)
. . ++|+|+|+.+++++.. .++.|++||+.+++....... ... . +. |+|. ||+ +
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-------------~~~-~-~~-~s~~--dg~-~ 296 (396)
T 3c5m_A 236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-------------PPC-S-HL-MSNF--DGS-L 296 (396)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-------------CSE-E-EE-EECS--SSS-E
T ss_pred CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-------------CCC-C-CC-ccCC--CCc-e
Confidence 1 1 7999999977654321 124599999988765433221 011 1 44 8882 344 5
Q ss_pred EEEec----------------CCCcEEEEEcCCCCcceeeeeccCC-----------CeeEEEeecCCCce
Q 024245 224 VLAGY----------------EDGSILVWDIRNPGIPLTAMKVHLE-----------PGLECSMWRNPITM 267 (270)
Q Consensus 224 l~~~~----------------~dg~i~vwd~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l 267 (270)
+++++ .++.|++||+.+ ++. ..+..+.. .+..++|+|||+.|
T Consensus 297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp EEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred EEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCccccccccccCCCCCceEccCCCeE
Confidence 66543 347899999987 553 34444444 25678999999865
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.49 E-value=4.8e-12 Score=98.60 Aligned_cols=209 Identities=12% Similarity=0.009 Sum_probs=125.5
Q ss_pred ccEEEEEEeCCCCEEEEecCC---C--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC--------
Q 024245 19 ASVTDVCFHQTKPILFAGTTG---G--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-------- 85 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d---g--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------- 85 (270)
..+..++|+|||++|+.++.+ + .|.+||+.+++........ . +..++|+| +|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~-~~~~~wsp--dg~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK---N-IRSLEWNE--DSRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---E-EEEEEECT--TSSEEEEEEECCCC-----
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC---C-ccceeECC--CCCEEEEEEccCCCcCCcE
Confidence 457889999999998887654 2 4888898887766554433 4 89999999 99988877632
Q ss_pred -------------------CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-------C-CceEEEe
Q 024245 86 -------------------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-------E-PKDCYER 138 (270)
Q Consensus 86 -------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~ 138 (270)
..|.+||+.+++... .+.........++... ..+.... . ...+|.+
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~----~l~~~~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~ 205 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE----EFEKPRFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIW 205 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTTTEEEE----EEEEETTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEE
T ss_pred EEcccceeecCcccccCccceEEEEECCCCeEEe----eecCCCcccccCCCCe---EEEEEecccccccccccccEEEe
Confidence 568899998876411 1111122222222222 1111111 1 2345554
Q ss_pred ccCceeeeccCCCCC-eEecCCCCeEEEEecCC------CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeee-e
Q 024245 139 EVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQ------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA-V 210 (270)
Q Consensus 139 ~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-~ 210 (270)
..++ ....... .. ..++|+|+.+++.+... ...|.+|| +++...... ++ ...+.. +
T Consensus 206 d~~~-~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--------~~----~~~~~~~~ 269 (347)
T 2gop_A 206 EDGK-EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--------EV----DRGVGQAK 269 (347)
T ss_dssp ETTE-EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--------TC----CSEEEEEE
T ss_pred CCCc-eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--------cC----CcccCCcc
Confidence 4332 2222222 22 44599999877644321 25788888 455433332 22 223443 5
Q ss_pred eecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 211 ~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
. |+ + + ++++++.++.++|| +.+ ++....+ .+...|.+++|+| ..++
T Consensus 270 ~-~s-d---g--~~~~~~~~~~~~l~-~~~-g~~~~~~-~~~~~v~~~~~s~-~~~~ 315 (347)
T 2gop_A 270 I-KD-G---K--VYFTLFEEGSVNLY-IWD-GEIKPIA-KGRHWIMGFDVDE-IVVY 315 (347)
T ss_dssp E-ET-T---E--EEEEEEETTEEEEE-EES-SSEEEEE-CSSSEEEEEEESS-SEEE
T ss_pred E-Ec-C---c--EEEEEecCCcEEEE-EcC-CceEEEe-cCCCeEEeeeeeC-cEEE
Confidence 5 87 3 3 78888899999999 885 6654444 4477899999998 5443
No 182
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=3.8e-11 Score=92.13 Aligned_cols=226 Identities=8% Similarity=0.002 Sum_probs=132.2
Q ss_pred cccccccEEEEEEeCCCCEEEE-------ecCCCcEEEEeCCCCceeEEEe----ecCCCcceEEEEEeeCCC-CCEEEE
Q 024245 14 LRGHRASVTDVCFHQTKPILFA-------GTTGGELRIWDTVQHRTVSSSW----VHSAAHGIVSVATGPSIG-LNKVIS 81 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~-~~~l~s 81 (270)
+...-....+++|+++|.++++ +..++.|.+||..+++...... ++. ..+.++++++ + ++++++
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~--~~~~~i~~~~--~~g~l~v~ 88 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG--GIPAGCQCDR--DANQLFVA 88 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE--CCEEEEEECS--SSSEEEEE
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCC--CCCceEEEec--CCCcEEEE
Confidence 3444456789999999988887 6778899999988776543221 122 4488999999 8 665555
Q ss_pred EeCCCcEEEEEccCCccCCCCc-ccee-cc-cceEEEEeeccCCccceecCCC--------------CceEEEeccCcee
Q 024245 82 QGRDGTVKCWDIENGGLSSNPS-LTIK-TN-SYHFCKLSLVKEPYANAKQANE--------------PKDCYEREVGETV 144 (270)
Q Consensus 82 ~~~d~~i~~wd~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 144 (270)
.. .+.|.+||.. ++... . .... .. ......+............... ...++.+......
T Consensus 89 ~~-~~~l~~~d~~-g~~~~--~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 164 (314)
T 1pjx_A 89 DM-RLGLLVVQTD-GTFEE--IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM 164 (314)
T ss_dssp ET-TTEEEEEETT-SCEEE--CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE
T ss_pred EC-CCCEEEEeCC-CCEEE--EEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCE
Confidence 44 4478899988 55322 1 1100 00 0111222222222111111111 1234444322212
Q ss_pred eeccC---CCCCeEec----CCCCeEEEEecCCCceEEEEeCC-Ccce-----eeeeccCcCCCCCCcccCCCceeeeee
Q 024245 145 DTDSL---CDSKDDVP----AEGPKYMAVAGEQLSEVEIWDLN-TAER-----CTRLHQNSCGGSPNFSSKGRGMCMAVQ 211 (270)
Q Consensus 145 ~~~~~---~~~~~~~s----~~~~~~~~~~~~~d~~i~iwd~~-~~~~-----~~~~~~~~~~~~~~h~~~~~~~~~~~~ 211 (270)
..... ....++++ |+++.+++ +...++.|.+||.. +++. ...+. ++. ......++
T Consensus 165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v-~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--------~~~---~~~p~~i~ 232 (314)
T 1pjx_A 165 IQVDTAFQFPNGIAVRHMNDGRPYQLIV-AETPTKKLWSYDIKGPAKIENKKVWGHIP--------GTH---EGGADGMD 232 (314)
T ss_dssp EEEEEEESSEEEEEEEECTTSCEEEEEE-EETTTTEEEEEEEEETTEEEEEEEEEECC--------CCS---SCEEEEEE
T ss_pred EEeccCCCCcceEEEecccCCCCCEEEE-EECCCCeEEEEECCCCCccccceEEEECC--------CCC---CCCCCceE
Confidence 11111 11128899 99976665 34457899999986 3432 11222 110 03455666
Q ss_pred ecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 212 ~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 265 (270)
+++ +|+ ++++...++.|.+||..+ ++.+..+..+...+.+++|+|+|.
T Consensus 233 -~d~---~G~-l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~i~~~~dg~ 280 (314)
T 1pjx_A 233 -FDE---DNN-LLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTK 280 (314)
T ss_dssp -EBT---TCC-EEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSS
T ss_pred -ECC---CCC-EEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCceeEEECCCCC
Confidence 887 455 677766788999999986 666677776667899999999997
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=1.6e-11 Score=101.42 Aligned_cols=185 Identities=13% Similarity=-0.036 Sum_probs=124.9
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc--CCccCCCCccc
Q 024245 28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE--NGGLSSNPSLT 105 (270)
Q Consensus 28 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~ 105 (270)
+.+.++++...++.|.++|..+++.+..+... ..+..+.|+| +|+++++++.|+.|.+||+. +.+... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~----~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVA----E 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS---SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEE----E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC---CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeE----E
Confidence 44557788888999999999999999888754 3478999999 99999999999999999995 443221 2
Q ss_pred eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEec----CCCCeEEEEecCCCceEEEEeCCC
Q 024245 106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP----AEGPKYMAVAGEQLSEVEIWDLNT 181 (270)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~~~d~~i~iwd~~~ 181 (270)
+....... .++|+ |+|+++++ +...+++|.|+|..+
T Consensus 236 i~~G~~P~---------------------------------------~ia~s~~~~pDGk~l~v-~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 236 IKIGSEAR---------------------------------------SIETSKMEGWEDKYAIA-GAYWPPQYVIMDGET 275 (567)
T ss_dssp EECCSEEE---------------------------------------EEEECCSTTCTTTEEEE-EEEETTEEEEEETTT
T ss_pred EecCCCCc---------------------------------------eeEEccccCCCCCEEEE-EEccCCeEEEEECCC
Confidence 22111110 05688 69998876 455679999999999
Q ss_pred cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc-eeeeeccCCCeeEEEe
Q 024245 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP-LTAMKVHLEPGLECSM 260 (270)
Q Consensus 182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~ 260 (270)
.+.+.++...... ..+........+..+. .++. +..++++...+|.|.++|....... +..+ .......++.|
T Consensus 276 ~~~~~~i~~~~~~-~~~~~~~p~~rva~i~-~s~~---~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~ 349 (567)
T 1qks_A 276 LEPKKIQSTRGMT-YDEQEYHPEPRVAAIL-ASHY---RPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGL 349 (567)
T ss_dssp CCEEEEEECCEEC-TTTCCEESCCCEEEEE-ECSS---SSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEE
T ss_pred CcEEEEEeccccc-cccccccCCCceEEEE-EcCC---CCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceE
Confidence 9988887631000 0000000011344555 6664 3337778888899999999873222 2222 23446778999
Q ss_pred ecCCCce
Q 024245 261 WRNPITM 267 (270)
Q Consensus 261 s~~g~~l 267 (270)
+|||+++
T Consensus 350 ~pdgr~~ 356 (567)
T 1qks_A 350 DGSHRYF 356 (567)
T ss_dssp CTTSCEE
T ss_pred CCCCCEE
Confidence 9999975
No 184
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=4e-12 Score=99.45 Aligned_cols=169 Identities=13% Similarity=0.091 Sum_probs=115.0
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-----------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
.++.+++++...++++|+.++ +++|++++.+ ..... ... . |+.++| . + +.|+++ .++.|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp--~-V~~l~f-d--~-~~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIP--D-VIFVCF-H--G-DQVLVS-TRNAL 108 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECT--T-EEEEEE-E--T-TEEEEE-ESSEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCC--C-eeEEEE-C--C-CEEEEE-cCCcE
Confidence 689999999999999999985 7779976433 11222 232 5 999999 4 4 888888 88999
Q ss_pred EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (270)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 168 (270)
++||+.+..... ..+........ +.+.+ ..+++ +
T Consensus 109 ~v~dv~sl~~~~----~~~~~~~~v~~--------------------------------------i~~~~--p~~av--~ 142 (388)
T 1xip_A 109 YSLDLEELSEFR----TVTSFEKPVFQ--------------------------------------LKNVN--NTLVI--L 142 (388)
T ss_dssp EEEESSSTTCEE----EEEECSSCEEE--------------------------------------EEECS--SEEEE--E
T ss_pred EEEEchhhhccC----ccceeecceee--------------------------------------EEecC--CCEEE--E
Confidence 999998764211 11111111110 11111 23433 3
Q ss_pred CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc--ee
Q 024245 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP--LT 246 (270)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~--~~ 246 (270)
..||.|.+||+.++.... +. ..+.+++ |+|. | ++.|..||++++|+... ++. ..
T Consensus 143 ~~dG~L~v~dl~~~~~~~-~~---------------~~Vs~v~-WSpk---G---~~vg~~dg~i~~~~~~~-~~~~~k~ 198 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ-LA---------------QNVTSFD-VTNS---Q---LAVLLKDRSFQSFAWRN-GEMEKQF 198 (388)
T ss_dssp ETTSEEEEEETTTCCEEE-EE---------------ESEEEEE-ECSS---E---EEEEETTSCEEEEEEET-TEEEEEE
T ss_pred ECCCCEEEEEccCCcccc-cc---------------CCceEEE-EcCC---c---eEEEEcCCcEEEEcCCC-ccccccc
Confidence 458999999999777643 22 2577887 9995 4 67788999999998886 443 44
Q ss_pred ee------e---ccCCCeeEEEeecCCCcee
Q 024245 247 AM------K---VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 247 ~~------~---~~~~~v~~~~~s~~g~~ls 268 (270)
++ . +|...|.+|.|.+++.++-
T Consensus 199 ~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 199 EFSLPSELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp EECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred eecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence 55 2 3678899999999988764
No 185
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.46 E-value=7.7e-12 Score=98.09 Aligned_cols=212 Identities=10% Similarity=0.042 Sum_probs=117.5
Q ss_pred CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEEEEEccCCccCCCCcccee
Q 024245 38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGGLSSNPSLTIK 107 (270)
Q Consensus 38 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~ 107 (270)
.|+.|.+||..+++.+..+..+. .+ .++|+| +++++++++ .++.|.+||..+.+... .+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~--~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~----~i~ 98 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAF--NG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK----EIS 98 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCE--EE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE----EEE
T ss_pred ccCeEEEEECCCCeEEEEecCCC--CC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE----EEE
Confidence 47899999999999888887654 33 899999 999998876 36789999998876543 222
Q ss_pred cc--------cceEEEEeeccCCccceecC-CCCceEEEeccCceeee-ccCCCCC-eEecCCCCeEEEEecCCCceEEE
Q 024245 108 TN--------SYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDT-DSLCDSK-DDVPAEGPKYMAVAGEQLSEVEI 176 (270)
Q Consensus 108 ~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~i 176 (270)
.. ......++............ ...+.+||+.+.+.+.. ...+... +.+.|++...+++ .+.||.+.+
T Consensus 99 ~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~-~~~dg~~~~ 177 (361)
T 2oiz_A 99 LPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMT-ICGDGGLLT 177 (361)
T ss_dssp ECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEE-EETTSSEEE
T ss_pred cCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEE-ECCCCcEEE
Confidence 11 11112222222222222222 34567788888776554 2221111 3455555333332 223566666
Q ss_pred EeCCC-cceeee------eccCcCC--CC---CC-------c----------ccC-------------------CCceee
Q 024245 177 WDLNT-AERCTR------LHQNSCG--GS---PN-------F----------SSK-------------------GRGMCM 208 (270)
Q Consensus 177 wd~~~-~~~~~~------~~~~~~~--~~---~~-------h----------~~~-------------------~~~~~~ 208 (270)
|+... ++.... +...... .. .+ + ... ......
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~ 257 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN 257 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred EEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence 66543 222200 0000000 00 00 0 000 000000
Q ss_pred eeeecCCCCCCCceEEEEec----------CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 209 AVQAYLPSKSQGFVNVLAGY----------EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 209 ~~~~~~p~~~~g~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
.++ |+|+ +...+++.. ..+.|.+||+.+ .+.+..+..+. +.+++|+|||++|
T Consensus 258 ~~a-~~~d---g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l 319 (361)
T 2oiz_A 258 LVG-LHRA---SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLM 319 (361)
T ss_dssp CEE-EETT---TTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEE
T ss_pred EEE-EecC---CCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEE
Confidence 134 7774 332344333 134899999999 88999998876 9999999999876
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.45 E-value=1.1e-10 Score=87.59 Aligned_cols=218 Identities=7% Similarity=-0.085 Sum_probs=124.5
Q ss_pred cEEEEEEeCCCCEEE-EecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 20 SVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
...+++++++|++++ +...++.|.+||..+........... ..+.++++.+ +++++++.. ++.|.+||..+...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~p~~i~~~~--~g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL--YQPQGLAVDG--AGTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC--CSCCCEEECT--TCCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc--CCcceeEECC--CCCEEEEcC-CCEEEEEeCCCceE
Confidence 788999999999777 55778899999976554332211222 4478999999 878666655 88999999876543
Q ss_pred CCCCccceecccceEEEEeeccCCccceecC--CCCceEEEeccCceeeeccCCC---CCeEecCCCCeEEEEecCCCce
Q 024245 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDTDSLCD---SKDDVPAEGPKYMAVAGEQLSE 173 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~d~~ 173 (270)
.. .... .......+.+..... ..... .+....++............+. ..++++++|. ++++ ...++.
T Consensus 100 ~~---~~~~-~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~-~~~~~~ 172 (270)
T 1rwi_B 100 TV---LPFD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVT-DTDNNR 172 (270)
T ss_dssp EE---CCCC-SCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEE-EGGGTE
T ss_pred ee---eecC-CcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEE-ECCCCE
Confidence 21 1111 111222233332222 22221 2223333322222221111111 1289999997 5543 334689
Q ss_pred EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCC
Q 024245 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (270)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 253 (270)
|.+||........... .+ ......++ +.|+ |. ++++...++.|.+||... .........+..
T Consensus 173 i~~~~~~~~~~~~~~~--------~~----~~~p~~i~-~d~~---g~-l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~ 234 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPF--------TD----ITAPWGIA-VDEA---GT-VYVTEHNTNQVVKLLAGS-TTSTVLPFTGLN 234 (270)
T ss_dssp EEEECTTTCCEEECCC--------SS----CCSEEEEE-ECTT---CC-EEEEETTTSCEEEECTTC-SCCEECCCCSCS
T ss_pred EEEEecCCCceEeecc--------cC----CCCceEEE-ECCC---CC-EEEEECCCCcEEEEcCCC-CcceeeccCCCC
Confidence 9999988655433222 11 13456676 8874 54 777777788999999875 333322222335
Q ss_pred CeeEEEeecCCCce
Q 024245 254 PGLECSMWRNPITM 267 (270)
Q Consensus 254 ~v~~~~~s~~g~~l 267 (270)
.+.+++++++|.++
T Consensus 235 ~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 235 TPLAVAVDSDRTVY 248 (270)
T ss_dssp CEEEEEECTTCCEE
T ss_pred CceeEEECCCCCEE
Confidence 78999999998653
No 187
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.44 E-value=5.5e-12 Score=108.14 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=63.2
Q ss_pred ccccccccccc-----EEEEEEeCCCCEEEEecCC---------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCC
Q 024245 10 PVAVLRGHRAS-----VTDVCFHQTKPILFAGTTG---------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG 75 (270)
Q Consensus 10 ~~~~~~~h~~~-----v~~~~~s~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 75 (270)
....+.+|... ...++|||||++|+.++.+ +.+.+||+.+++... +..+. ..+...+|+| +
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~--~~~~~~~~SP--d 122 (740)
T 4a5s_A 48 SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIP--NNTQWVTWSP--V 122 (740)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC--TTEEEEEECS--S
T ss_pred eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCC--CcceeeEECC--C
Confidence 34445555432 3458899999999998876 567799999887654 44444 5699999999 9
Q ss_pred CCEEEEEeCCCcEEEEEccCCcc
Q 024245 76 LNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 76 ~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
|+.|+.+. |+.|.+||+.+++.
T Consensus 123 G~~la~~~-~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 123 GHKLAYVW-NNDIYVKIEPNLPS 144 (740)
T ss_dssp TTCEEEEE-TTEEEEESSTTSCC
T ss_pred CCEEEEEE-CCeEEEEECCCCce
Confidence 99998874 68999999987764
No 188
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=2.4e-11 Score=104.20 Aligned_cols=227 Identities=10% Similarity=-0.003 Sum_probs=131.0
Q ss_pred cccccEEEEEEeCCCCEEEEecCC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc---
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT--- 87 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~--- 87 (270)
+|...+..++|||||++||.++.+ ..|++||+.+++.+... .+. ..+..++|+| + +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~--~~~~~~~wsp--D-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKW--VKFSGLAWLG--N-DALLYSRFAEPKEG 233 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEE--EESCCCEEST--T-SEEEEEECCCC---
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCC--ceeccEEEEC--C-CEEEEEEecCcccc
Confidence 344578899999999998876543 46999999998876532 122 2246789999 9 88887776554
Q ss_pred -----------EEEEEccCCccCCCCccceecccceEEEEeeccCCcc----ceecC----CCCceEEEeccCce--eee
Q 024245 88 -----------VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA----NAKQA----NEPKDCYEREVGET--VDT 146 (270)
Q Consensus 88 -----------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~--~~~ 146 (270)
|.+|++.++......+............. .+++.+ ..... .....++++..+.. ...
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~--~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 311 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA--SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA 311 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE--EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE--EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence 88999877653221122222221112222 223332 11111 12344567665521 222
Q ss_pred ccCCCCC--eEecCCCCeEEEEecC--CCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245 147 DSLCDSK--DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 221 (270)
Q Consensus 147 ~~~~~~~--~~~s~~~~~~~~~~~~--~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~ 221 (270)
....... ..++|+|+.+++.+.. .++.|.+||+.++. ....+.. .+ ...+..+. |. ++.
T Consensus 312 l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-------~~----~~~l~~~~-~~----~~~ 375 (741)
T 1yr2_A 312 LIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-------ES----KDNLESVG-IA----GNR 375 (741)
T ss_dssp EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-------CC----SSEEEEEE-EE----BTE
T ss_pred ecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-------CC----CCeEEEEE-EE----CCE
Confidence 2222222 3356899888775532 24669999998752 3333331 22 12344444 54 344
Q ss_pred eEEEEecCCCcEEEEEcCCCCcceeeeecc-CCCeeEEEeecCCCce
Q 024245 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEPGLECSMWRNPITM 267 (270)
Q Consensus 222 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l 267 (270)
++++...|+..+||.+...+.....+..+ ...+..++++|++..|
T Consensus 376 -lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l 421 (741)
T 1yr2_A 376 -LFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA 421 (741)
T ss_dssp -EEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCE
T ss_pred -EEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEE
Confidence 88888899988887665325555666543 5678899999998754
No 189
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.43 E-value=1e-10 Score=88.60 Aligned_cols=196 Identities=9% Similarity=0.074 Sum_probs=117.1
Q ss_pred cccccEEEEEEe-CCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 16 GHRASVTDVCFH-QTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 16 ~h~~~v~~~~~s-~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
+|...+.++++. +++.++++... ++.|++|| .+++.+..+..... ..+.++++.| +++++++...++.|.+||.
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~-~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~ 149 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATIL-QHPRGVTVDN--KGRIIVVECKVMRVIIFDQ 149 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTC-SCEEEEEECT--TSCEEEEETTTTEEEEECT
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccC-CCceEEEEeC--CCCEEEEECCCCEEEEEcC
Confidence 345678999995 67776666643 78999999 55776666643221 4589999999 8888888888899999996
Q ss_pred cCCccCCCCcccee--cccceEEEEeeccCCcccee-cCCCCceEEEeccCceeee-ccCCCCC----eEecCCCCeEEE
Q 024245 94 ENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDT-DSLCDSK----DDVPAEGPKYMA 165 (270)
Q Consensus 94 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~s~~~~~~~~ 165 (270)
... ... .+. ........+.+......... .....+..|+... +.+.. ...++.. ++++++|. +++
T Consensus 150 ~g~-~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~-l~v 222 (286)
T 1q7f_A 150 NGN-VLH----KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGE-ILI 222 (286)
T ss_dssp TSC-EEE----EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCC-EEE
T ss_pred CCC-EEE----EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCC-EEE
Confidence 532 211 221 11112223333332221111 1133445566532 22221 1122111 89999996 444
Q ss_pred EecCCCc-eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 166 VAGEQLS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 166 ~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+ ...++ .|.+||. +++.+..+.. +. ....+..++ ++| +|+ ++++ +.|+.|++|++..
T Consensus 223 ~-~~~~~~~i~~~~~-~g~~~~~~~~--------~~--~~~~~~~i~-~~~---~g~-l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 223 A-DNHNNFNLTIFTQ-DGQLISALES--------KV--KHAQCFDVA-LMD---DGS-VVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp E-ECSSSCEEEEECT-TSCEEEEEEE--------SS--CCSCEEEEE-EET---TTE-EEEE-ETTTEEEEEECSC
T ss_pred E-eCCCCEEEEEECC-CCCEEEEEcc--------cC--CCCcceeEE-ECC---CCc-EEEE-CCCCeEEEEEccc
Confidence 3 33354 9999995 4677766652 21 122355676 888 465 5666 5699999999876
No 190
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=3.9e-10 Score=87.13 Aligned_cols=221 Identities=11% Similarity=0.027 Sum_probs=128.6
Q ss_pred ccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 19 ~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
....+..|+|+ +.++++...++.|..||..+++.. .+.. . ..+.+++|++ +++++++. .+ .|.+||..+++
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~--~~v~~i~~~~--dg~l~v~~-~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-P--FMGSALAKIS--DSKQLIAS-DD-GLFLRDTATGV 120 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-S--SCEEEEEEEE--TTEEEEEE-TT-EEEEEETTTCC
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-C--CcceEEEEeC--CCeEEEEE-CC-CEEEEECCCCc
Confidence 34578899996 556777777899999999876543 3332 2 4599999999 87776654 44 49999998776
Q ss_pred cCCCCccceecc--cceEEEEeeccCCccceecCC-----CCceEEEeccCceeeeccC---CCCCeEecCCCCeEEEEe
Q 024245 98 LSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQAN-----EPKDCYEREVGETVDTDSL---CDSKDDVPAEGPKYMAVA 167 (270)
Q Consensus 98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~ 167 (270)
... +...... ......+.+...........+ ....+|.+..++ ...... ....++|+|+++.++++
T Consensus 121 ~~~--~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~- 196 (326)
T 2ghs_A 121 LTL--HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADISIPNSICFSPDGTTGYFV- 196 (326)
T ss_dssp EEE--EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEESSEEEEEECTTSCEEEEE-
T ss_pred EEE--EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEeeCCCcccCCeEEcCCCCEEEEE-
Confidence 422 1111110 111222223222221111111 123455544332 221111 11128999999877664
Q ss_pred cCCCceEEEEeCC--Cc-cee--eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245 168 GEQLSEVEIWDLN--TA-ERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (270)
Q Consensus 168 ~~~d~~i~iwd~~--~~-~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~ 242 (270)
...++.|.+||+. ++ +.. ..+.. . .........+. +.+ +|. ++++...++.|.+||. + +
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~--------~-~~~~~~p~gi~-~d~---~G~-lwva~~~~~~v~~~d~-~-g 260 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFID--------S-TGIKGGMDGSV-CDA---EGH-IWNARWGEGAVDRYDT-D-G 260 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEE--------C-TTSSSEEEEEE-ECT---TSC-EEEEEETTTEEEEECT-T-C
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEE--------C-CCCCCCCCeeE-ECC---CCC-EEEEEeCCCEEEEECC-C-C
Confidence 4456899999986 55 321 11210 0 00122344565 776 455 5555556788999998 4 6
Q ss_pred cceeeeeccCCCeeEEEee-cCCCce
Q 024245 243 IPLTAMKVHLEPGLECSMW-RNPITM 267 (270)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~s-~~g~~l 267 (270)
+.+..+..+...+++++|+ |++..|
T Consensus 261 ~~~~~i~~~~~~~~~~af~g~d~~~L 286 (326)
T 2ghs_A 261 NHIARYEVPGKQTTCPAFIGPDASRL 286 (326)
T ss_dssp CEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred CEEEEEECCCCCcEEEEEecCCCCEE
Confidence 6777777766789999999 887543
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=4.3e-10 Score=88.38 Aligned_cols=204 Identities=9% Similarity=-0.034 Sum_probs=121.3
Q ss_pred EEEEeCCCCEEEEec----------CCCcEEEEeCCCCceeEEEeec-CC----CcceEEEEEeeCCCCCEEEEEeC--C
Q 024245 23 DVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVH-SA----AHGIVSVATGPSIGLNKVISQGR--D 85 (270)
Q Consensus 23 ~~~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~~~l~s~~~--d 85 (270)
.++++|||++++.+. .++.|.+||..+.+.+..+... .. ......+.|+| +|++|+.++. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp--DG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC--CCCEEEEEecCCC
Confidence 899999999988875 3678999999988888776543 00 01245899999 9999998874 5
Q ss_pred CcEEEEEccCCccCCCCccceec-------ccceEEEEeecc------------------------CC---------cc-
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKT-------NSYHFCKLSLVK------------------------EP---------YA- 124 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------------------~~---------~~- 124 (270)
+.|.++| .+++.... +..... ....+....... .+ ..
T Consensus 148 ~~v~viD-~t~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQ-LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred CeEEEEE-CCCCEEeE-EcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCC
Confidence 7899999 88875442 011100 000000000000 00 00
Q ss_pred --ceecCCCCceEEEeccCc-eeeeccC---------C--CCC---eEecCCCCeEEEEecC--------CCceEEEEeC
Q 024245 125 --NAKQANEPKDCYEREVGE-TVDTDSL---------C--DSK---DDVPAEGPKYMAVAGE--------QLSEVEIWDL 179 (270)
Q Consensus 125 --~~~~~~~~~~~~~~~~~~-~~~~~~~---------~--~~~---~~~s~~~~~~~~~~~~--------~d~~i~iwd~ 179 (270)
......+....+|+.... .+...+. + ... ++++|++++++++... .++.|.++|+
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 000001111222332211 0101110 0 111 7889999888875421 1368999999
Q ss_pred CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCCcEEEEEcCCCCcceeee
Q 024245 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 248 (270)
.+++.+.++.. ......+. |+| ||+.+++++. .++.|.+||+.+ ++.+..+
T Consensus 306 ~t~~vv~~i~~-------------g~~p~~i~-~s~---Dg~~~l~v~~~~~~~V~ViD~~t-~~vv~~i 357 (373)
T 2mad_H 306 LVGQTSSQISL-------------GHDVDAIS-VAQ---DGGPDLYALSAGTEVLHIYDAGA-GDQDQST 357 (373)
T ss_pred CCCEEEEEEEC-------------CCCcCeEE-ECC---CCCeEEEEEcCCCCeEEEEECCC-CCEEeee
Confidence 99999988873 22466777 998 4553455555 589999999999 7777773
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.37 E-value=2.5e-10 Score=88.28 Aligned_cols=201 Identities=9% Similarity=-0.117 Sum_probs=125.1
Q ss_pred cCCCcEEEEeCCCCceeEEEee----cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccce
Q 024245 37 TTGGELRIWDTVQHRTVSSSWV----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (270)
Q Consensus 37 ~~dg~i~vwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 112 (270)
+.++.|.++|.++++....+.. ..-......+.+.. +..+++...++.|.+||..+++... .+... ..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~lyv~~~~~~~v~viD~~t~~~~~----~i~~~-~~ 85 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GIGWIVVNNSHVIFAIDINTFKEVG----RITGF-TS 85 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TEEEEEEGGGTEEEEEETTTCCEEE----EEECC-SS
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CEEEEEEcCCCEEEEEECcccEEEE----EcCCC-CC
Confidence 3488999999999877654421 11113367787744 3666677778999999999987644 33222 11
Q ss_pred EEEEeeccCCccceec--CCCCceEEEeccCceeeeccCCC------CC--eEecCCCCeEEEEecCCCceEEEEeCCCc
Q 024245 113 FCKLSLVKEPYANAKQ--ANEPKDCYEREVGETVDTDSLCD------SK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182 (270)
Q Consensus 113 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~ 182 (270)
...+.+.... ..... .......+|..+.+.......+. .. +++ ++..++++..+.++.|.++|+.++
T Consensus 86 p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 86 PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT
T ss_pred CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC
Confidence 2222221122 12222 34556677887776554333222 22 677 455676643324789999999999
Q ss_pred ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC----------CcEEEEEcCCCCcceeeeecc-
Q 024245 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----------GSILVWDIRNPGIPLTAMKVH- 251 (270)
Q Consensus 183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~- 251 (270)
+.+.++.. + .....+. ++| +|+ +++++..+ +.|.++|..+ ++....+...
T Consensus 163 ~~~~~i~~-------g------~~p~~i~-~~~---dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~ 223 (328)
T 3dsm_A 163 KVVDELTI-------G------IQPTSLV-MDK---YNK-MWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKL 223 (328)
T ss_dssp EEEEEEEC-------S------SCBCCCE-ECT---TSE-EEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCT
T ss_pred eEEEEEEc-------C------CCccceE-EcC---CCC-EEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCC
Confidence 98887763 1 1234555 887 566 55555544 7899999988 6766666532
Q ss_pred CCCeeEEEeecCCCce
Q 024245 252 LEPGLECSMWRNPITM 267 (270)
Q Consensus 252 ~~~v~~~~~s~~g~~l 267 (270)
...+..++|+||+..|
T Consensus 224 g~~p~~la~~~d~~~l 239 (328)
T 3dsm_A 224 GDWPSEVQLNGTRDTL 239 (328)
T ss_dssp TCCCEEEEECTTSCEE
T ss_pred CCCceeEEEecCCCEE
Confidence 2468999999988754
No 193
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.36 E-value=3e-10 Score=87.89 Aligned_cols=202 Identities=11% Similarity=0.042 Sum_probs=123.4
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEee-------cCCCcceEEEEEeeCCCCCEEEEEe-CCCc
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWV-------HSAAHGIVSVATGPSIGLNKVISQG-RDGT 87 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~ 87 (270)
+-.....++++|+|+++++...++.|++||..... .+..+.. .........++++|. +++++++.+ .++.
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSR 167 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCe
Confidence 34578899999999999998889999999986442 4544421 111135889999982 356666665 6899
Q ss_pred EEEEEccCCccCCCCccceecc----------cceEEEEeeccCCccceec--CCCCceEEEeccCceeeecc-CCCCC-
Q 024245 88 VKCWDIENGGLSSNPSLTIKTN----------SYHFCKLSLVKEPYANAKQ--ANEPKDCYEREVGETVDTDS-LCDSK- 153 (270)
Q Consensus 88 i~~wd~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~- 153 (270)
|++||. +++... .+... ......+.+.......... ....+..|+..+++.+.... ..+..
T Consensus 168 I~~~~~-~g~~~~----~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~ 242 (329)
T 3fvz_A 168 IVQFSP-SGKFVT----QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN 242 (329)
T ss_dssp EEEECT-TSCEEE----EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC
T ss_pred EEEEcC-CCCEEE----EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC
Confidence 999994 443322 22110 0112233333321222222 23445567776555544322 12222
Q ss_pred ---eEecCCCCeEEEE------ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245 154 ---DDVPAEGPKYMAV------AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (270)
Q Consensus 154 ---~~~s~~~~~~~~~------~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (270)
++++| + .++.. +...+..|++||..+++.+..+.. . .........++ ++| +|. ++
T Consensus 243 ~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~--------~-~~~~~~p~~ia-~~~---dG~-ly 306 (329)
T 3fvz_A 243 VFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP--------V-RKHFDMPHDIV-ASE---DGT-VY 306 (329)
T ss_dssp EEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC--------S-SSCCSSEEEEE-ECT---TSE-EE
T ss_pred cceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC--------C-CCccCCeeEEE-ECC---CCC-EE
Confidence 77888 2 22222 233456899999999998888751 0 11233567787 998 464 88
Q ss_pred EEecCCCcEEEEEcCC
Q 024245 225 LAGYEDGSILVWDIRN 240 (270)
Q Consensus 225 ~~~~~dg~i~vwd~~~ 240 (270)
++...++.|++|++..
T Consensus 307 vad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 307 IGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEESSSCCEEEEEEEE
T ss_pred EEECCCCEEEEEeCCc
Confidence 8889999999999874
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.35 E-value=5.8e-11 Score=91.95 Aligned_cols=219 Identities=7% Similarity=-0.021 Sum_probs=127.8
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
..|.++.|++++..++..+.++.++.| .++....+..+. ..+.+++|++ ++++++++..++.|.+||..+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~--~g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKG--LQLEGLNFDR--QGQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSC--CCEEEEEECT--TSCEEEEETTTCEEEEECTTTCCE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccC--ccccCcEECC--CCCEEEEECCCCEEEEEeCCCCcE
Confidence 346778899988777777888899999 355566666555 4589999999 888778888899999999988764
Q ss_pred CCCCccceecccceEEEEeeccCCccceecCC-----CCceEEEeccCceeeecc-CCCCC----eEecCCCCeEEEEec
Q 024245 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-----EPKDCYEREVGETVDTDS-LCDSK----DDVPAEGPKYMAVAG 168 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~----~~~s~~~~~~~~~~~ 168 (270)
.. . ..........+.............. .....++...+....... ..... ++++|+|..++ ++.
T Consensus 79 ~~--~--~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~ 153 (333)
T 2dg1_A 79 KR--P--FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF-TDF 153 (333)
T ss_dssp EE--E--EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE-EEC
T ss_pred EE--E--eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEE-Eec
Confidence 32 1 1111222233333322222222222 134445555444321111 11111 88999996444 332
Q ss_pred C-----CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 169 E-----QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 169 ~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
. ..+.|..+|..+++...... . ......++ |+|+ |+.++++.+.++.|++||+.+.+.
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~~~~---------~----~~~~~~i~-~~~d---g~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 154 RGYSTNPLGGVYYVSPDFRTVTPIIQ---------N----ISVANGIA-LSTD---EKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp CCBTTBCCEEEEEECTTSCCEEEEEE---------E----ESSEEEEE-ECTT---SSEEEEEEGGGTEEEEEEECTTSS
T ss_pred cccccCCCceEEEEeCCCCEEEEeec---------C----CCcccceE-ECCC---CCEEEEEeCCCCeEEEEEecCCCc
Confidence 1 13567777766544332222 1 11345666 9984 543455666788999999974333
Q ss_pred ceeee--------eccCCCeeEEEeecCCCce
Q 024245 244 PLTAM--------KVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 244 ~~~~~--------~~~~~~v~~~~~s~~g~~l 267 (270)
.+..+ .++ ..+..++++++|.++
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~ 247 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDNLY 247 (333)
T ss_dssp SEEEEEEEEEEECCSS-SEEEEEEEBTTCCEE
T ss_pred CcccccceEEEecCCC-CCCCceEECCCCCEE
Confidence 33211 122 367889999998764
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.34 E-value=2.4e-09 Score=83.54 Aligned_cols=216 Identities=10% Similarity=-0.021 Sum_probs=134.5
Q ss_pred EEEEEEeCCCCEEEEecC--CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC-Cc
Q 024245 21 VTDVCFHQTKPILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GG 97 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~ 97 (270)
-..++|+|||++++.+.. ++.|.++|+.+++.+.++.... . .. +.|. ....+++.+.||.+.+.++.+ ++
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~-~~-~~P~-g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C-YH-IFPT-APDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E-EE-EEEE-ETTEEEEEETTSCEEEEECCSSSC
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c-ce-eecC-CCceeEEECCCCCEEEEECCCCCe
Confidence 345899999998888764 6899999999999998886532 2 22 2341 446777888899999999876 44
Q ss_pred cCC--CCccceecccceEEEEeec-cCCccceecCCCCceEEEeccCce-eeec--------------cCCCCCeEecCC
Q 024245 98 LSS--NPSLTIKTNSYHFCKLSLV-KEPYANAKQANEPKDCYEREVGET-VDTD--------------SLCDSKDDVPAE 159 (270)
Q Consensus 98 ~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~s~~ 159 (270)
... ...+........ ....+. ......+...++....+|...... +... ..+...++++++
T Consensus 212 v~~~~~~~~~~~~~~~~-~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~ 290 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLI-NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 290 (386)
T ss_dssp CEEEECCCCSCTTSCBC-SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred EEEeecceecccccccc-ccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence 311 000000000000 000110 011112223333444455543321 1111 112233889999
Q ss_pred CCeEEEEecC--------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc-eEEEEecCC
Q 024245 160 GPKYMAVAGE--------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYED 230 (270)
Q Consensus 160 ~~~~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~~~~d 230 (270)
+++++++... ..+.|.++|+.+++.+.++.. ....+.+. ++|+ ++ .++++...+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-------------g~~~~~la-vs~D---~~~~ly~tn~~~ 353 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-------------GHEIDSIN-VSQD---EKPLLYALSTGD 353 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------------EEEECEEE-ECSS---SSCEEEEEETTT
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-------------CCCcceEE-ECCC---CCeEEEEEcCCC
Confidence 9998886431 136799999999999999884 23567787 9985 43 245556679
Q ss_pred CcEEEEEcCCCCcceeeeeccCCCeeEEEeecC
Q 024245 231 GSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN 263 (270)
Q Consensus 231 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 263 (270)
+.|.++|..+ ++.+.+++. .+..+.|.+++|
T Consensus 354 ~~VsViD~~t-~k~~~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 354 KTLYIHDAES-GEELRSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp TEEEEEETTT-CCEEEEECC-CCSSCCEEEECC
T ss_pred CeEEEEECCC-CcEEEEecC-CCCCceeEECCc
Confidence 9999999999 888888875 456678889887
No 196
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.34 E-value=3.8e-10 Score=89.54 Aligned_cols=216 Identities=7% Similarity=-0.033 Sum_probs=130.9
Q ss_pred EEEEeCCCCEEEEec----------CCCcEEEEeCCCCceeEEEeec-CC----CcceEEEEEeeCCCCCEEEEEeC--C
Q 024245 23 DVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVH-SA----AHGIVSVATGPSIGLNKVISQGR--D 85 (270)
Q Consensus 23 ~~~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~~~l~s~~~--d 85 (270)
.+.++|||++|+.+. .++.|.++|..+++.+..+... .. ......+.|+| +|++|+.+.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP--DNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT--TSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEecCCC
Confidence 799999999887775 3678999999999988887643 00 02246789999 9999998774 5
Q ss_pred CcEEEEEccCCccCCCCccceeccc---------ceEEEEeeccC--------Ccc------------------------
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNS---------YHFCKLSLVKE--------PYA------------------------ 124 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~--------~~~------------------------ 124 (270)
+.|.+.|+.+++... .++... ..+..++.... ...
T Consensus 200 ~~VsVID~~t~kvv~----~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d 275 (426)
T 3c75_H 200 PAVGVVDLEGKTFDR----MLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR 275 (426)
T ss_dssp CEEEEEETTTTEEEE----EEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT
T ss_pred CeEEEEECCCCeEEE----EEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC
Confidence 789999999987654 121110 00000000000 000
Q ss_pred ----ceecCCCCceEEEeccCcee-eec--------------cCCCCCeEecCCCCeEEEEecC--------CCceEEEE
Q 024245 125 ----NAKQANEPKDCYEREVGETV-DTD--------------SLCDSKDDVPAEGPKYMAVAGE--------QLSEVEIW 177 (270)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~s~~~~~~~~~~~~--------~d~~i~iw 177 (270)
......+....+|....... ... ..+...++++|++++++++... .++.|.++
T Consensus 276 g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI 355 (426)
T 3c75_H 276 SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL 355 (426)
T ss_dssp TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence 00000111122233221110 000 0111127899999988875421 13689999
Q ss_pred eCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc-eEEEEecCCCcEEEEEcCCCCcceeeeeccCCCee
Q 024245 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGL 256 (270)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 256 (270)
|..+.+.+.++.. ....+.+. |+|+ |+ .++++...++.|.++|+.+ .+.+.++..-.....
T Consensus 356 D~~T~kvv~~I~v-------------g~~P~gia-~spD---g~~~lyv~n~~s~~VsVID~~t-~kvv~tI~~vG~~P~ 417 (426)
T 3c75_H 356 NAETGERINKIEL-------------GHEIDSIN-VSQD---AEPLLYALSAGTQTLHIYDAAT-GEELRSVDQLGRGPQ 417 (426)
T ss_dssp ETTTCCEEEEEEE-------------EEEECEEE-ECCS---SSCEEEEEETTTTEEEEEETTT-CCEEEEECCCSSSCC
T ss_pred ECCCCeEEEEEEC-------------CCCcCeEE-EccC---CCEEEEEEcCCCCeEEEEECCC-CCEEEEecCCCCCCc
Confidence 9999999999873 23577777 9984 55 3555555799999999999 888888632122222
Q ss_pred EEEeecC
Q 024245 257 ECSMWRN 263 (270)
Q Consensus 257 ~~~~s~~ 263 (270)
+..+||
T Consensus 418 -~i~~~~ 423 (426)
T 3c75_H 418 -IITTHD 423 (426)
T ss_dssp -EEECCC
T ss_pred -EEEcCC
Confidence 556654
No 197
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.33 E-value=1.1e-09 Score=81.03 Aligned_cols=191 Identities=7% Similarity=-0.032 Sum_probs=125.0
Q ss_pred cccccccccc--cEEEEEEeCCCCEEEEecC--CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeC
Q 024245 10 PVAVLRGHRA--SVTDVCFHQTKPILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR 84 (270)
Q Consensus 10 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~ 84 (270)
.+.++. |.. ....+.|++++.+.++.+. ++.|.+.|+.+++.+..+..... .....+++.. +.|+ +.-.
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g----~~lyv~t~~ 84 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLN----EKLYQVVWL 84 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEET----TEEEEEETT
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEeC----CEEEEEEec
Confidence 344553 443 3689999998765555443 57999999999999988764332 1233455543 4554 5556
Q ss_pred CCcEEEEEccCCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 163 (270)
++.+.++|..+.+... .++.. ... ..+++||+.+
T Consensus 85 ~~~v~viD~~t~~v~~----~i~~g~~~g-----------------------------------------~glt~Dg~~l 119 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIK----NFTHQMKDG-----------------------------------------WGLATDGKIL 119 (266)
T ss_dssp CSEEEEEETTTTEEEE----EEECCSSSC-----------------------------------------CEEEECSSSE
T ss_pred CCEEEEEECCCCcEEE----EEECCCCCe-----------------------------------------EEEEECCCEE
Confidence 8899999999876543 22211 100 2366788888
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
+++.+ ++.|.++|..+.+.+..+.. +-..........+. |. +|+ .++....++.|.+.|..+ ++
T Consensus 120 ~vs~g--s~~l~viD~~t~~v~~~I~V-------g~~~~p~~~~nele-~~----dg~-lyvn~~~~~~V~vID~~t-g~ 183 (266)
T 2iwa_A 120 YGSDG--TSILYEIDPHTFKLIKKHNV-------KYNGHRVIRLNELE-YI----NGE-VWANIWQTDCIARISAKD-GT 183 (266)
T ss_dssp EEECS--SSEEEEECTTTCCEEEEEEC-------EETTEECCCEEEEE-EE----TTE-EEEEETTSSEEEEEETTT-CC
T ss_pred EEECC--CCeEEEEECCCCcEEEEEEE-------CCCCcccccceeEE-EE----CCE-EEEecCCCCeEEEEECCC-Cc
Confidence 87543 68999999999988888773 11000111244555 65 354 556666788999999999 88
Q ss_pred ceeeeeccC-------------CCeeEEEeecCCCce
Q 024245 244 PLTAMKVHL-------------EPGLECSMWRNPITM 267 (270)
Q Consensus 244 ~~~~~~~~~-------------~~v~~~~~s~~g~~l 267 (270)
.+..+.... ...+.|+|+|+++.+
T Consensus 184 V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 184 LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred EEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 888776321 356899999998653
No 198
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=5.2e-10 Score=85.61 Aligned_cols=226 Identities=8% Similarity=0.010 Sum_probs=125.1
Q ss_pred cccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 12 AVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 12 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
..+...........|+|+|+ ++++...++.|..|+.. ++ ...+.... ..+..+++.+ +|+++++...++.|.+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~--~~~~gl~~d~--dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDAT--AFTNGNAVDA--QQRLVHCEHGRRAITR 111 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESC--SCEEEEEECT--TSCEEEEETTTTEEEE
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCC--CccceeeECC--CCCEEEEECCCCEEEE
Confidence 33444556678899999998 67788888999999984 44 34454444 4589999999 8887766666678999
Q ss_pred EEccCCccCCCCccceecc-c-ceEEEEeeccCCcccee----cC------------CCCceEEEec--cCceeeec-cC
Q 024245 91 WDIENGGLSSNPSLTIKTN-S-YHFCKLSLVKEPYANAK----QA------------NEPKDCYERE--VGETVDTD-SL 149 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~----~~------------~~~~~~~~~~--~~~~~~~~-~~ 149 (270)
|+.. ++... +...... . .....+.+......... .. .....++.+. +++..... +.
T Consensus 112 ~~~~-g~~~~--~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~ 188 (305)
T 3dr2_A 112 SDAD-GQAHL--LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLD 188 (305)
T ss_dssp ECTT-SCEEE--EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEES
T ss_pred ECCC-CCEEE--EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCC
Confidence 9875 43211 1000000 0 00011122211111110 00 0112333333 33322211 11
Q ss_pred CCCCeEecCCCCeEEEEecCC----CceEEEEeCCCccee--eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245 150 CDSKDDVPAEGPKYMAVAGEQ----LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (270)
Q Consensus 150 ~~~~~~~s~~~~~~~~~~~~~----d~~i~iwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~ 223 (270)
....++|+|+++.++++.... ++.|.+||+..+... ..+.. . ..+....+. +.+ +|. +
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-------~----~~~~pdgi~-~d~---~G~-l 252 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-------V----PDGLPDGFC-VDR---GGW-L 252 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-------C----SSSCCCSEE-ECT---TSC-E
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-------C----CCCCCCeEE-ECC---CCC-E
Confidence 111289999998777643321 268999998754411 11110 0 112233454 766 465 3
Q ss_pred EEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 224 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
.++..+ .|.+||.. ++.+..+..+. .+.+++|+|++..|
T Consensus 253 -wv~~~~-gv~~~~~~--g~~~~~~~~~~-~~~~~~f~~d~~~L 291 (305)
T 3dr2_A 253 -WSSSGT-GVCVFDSD--GQLLGHIPTPG-TASNCTFDQAQQRL 291 (305)
T ss_dssp -EECCSS-EEEEECTT--SCEEEEEECSS-CCCEEEECTTSCEE
T ss_pred -EEecCC-cEEEECCC--CCEEEEEECCC-ceeEEEEeCCCCEE
Confidence 333344 49999984 66777776554 68999999988643
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.32 E-value=7.7e-09 Score=78.49 Aligned_cols=223 Identities=3% Similarity=-0.098 Sum_probs=130.8
Q ss_pred ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
..+...+.++++.++|.+.++...++.|.+||.. ++.. .+........+.++++.+ ++.++++...++.|..||..
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECCC
Confidence 3455789999999999988877768899999988 5433 332211115589999999 88888877778889999976
Q ss_pred CCccCCCCccceecccceEEEEeeccCCccceec-CCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecC
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE 169 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~ 169 (270)
++... ............+............ .......++. .++........... +++.++|. +++ +..
T Consensus 87 -g~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v-~~~ 159 (299)
T 2z2n_A 87 -GIIKE---YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWF-TEN 159 (299)
T ss_dssp -SCEEE---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEE-EET
T ss_pred -CcEEE---EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEE-EeC
Confidence 32211 1111111122223333222211111 1223334444 33332222221111 88899986 444 334
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee-ee
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-AM 248 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~-~~ 248 (270)
.++.|..||. +++... +... .. ...+..++ +.| +|. ++++...++.|.+||. + ++... .+
T Consensus 160 ~~~~i~~~~~-~g~~~~-~~~~------~~----~~~~~~i~-~~~---~g~-l~v~~~~~~~i~~~~~-~-g~~~~~~~ 220 (299)
T 2z2n_A 160 QNNAIGRITE-SGDITE-FKIP------TP----ASGPVGIT-KGN---DDA-LWFVEIIGNKIGRITT-S-GEITEFKI 220 (299)
T ss_dssp TTTEEEEECT-TCCEEE-EECS------ST----TCCEEEEE-ECT---TSS-EEEEETTTTEEEEECT-T-CCEEEEEC
T ss_pred CCCEEEEEcC-CCcEEE-eeCC------CC----CCcceeEE-ECC---CCC-EEEEccCCceEEEECC-C-CcEEEEEC
Confidence 4688999998 666443 2210 11 22355666 887 455 6666667889999998 5 44322 22
Q ss_pred eccCCCeeEEEeecCCCce
Q 024245 249 KVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 249 ~~~~~~v~~~~~s~~g~~l 267 (270)
..+...+.+++++++|.+.
T Consensus 221 ~~~~~~~~~i~~~~~g~l~ 239 (299)
T 2z2n_A 221 PTPNARPHAITAGAGIDLW 239 (299)
T ss_dssp SSTTCCEEEEEECSTTCEE
T ss_pred CCCCCCceeEEECCCCCEE
Confidence 3344678999999998753
No 200
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.31 E-value=2.7e-10 Score=88.88 Aligned_cols=230 Identities=7% Similarity=-0.068 Sum_probs=136.3
Q ss_pred cccccccccccEEEEEEeCCCCEEEEec----------CCCcEEEEeCCCCceeEEEeecCCC-----cceEEEEEeeCC
Q 024245 10 PVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPSI 74 (270)
Q Consensus 10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~ 74 (270)
.+.++..-..+ .+.++||+++++.+. .++.|.+||+.+++.+.++...... .....++++|
T Consensus 58 v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp-- 133 (368)
T 1mda_H 58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-- 133 (368)
T ss_dssp EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT--
T ss_pred EEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC--
Confidence 34444333344 799999999888875 4688999999999999998754100 1256899999
Q ss_pred CCCEEEEEeC--CCcEEE--EEccCCccCCC--CccceecccceE---------EEEeecc-------------------
Q 024245 75 GLNKVISQGR--DGTVKC--WDIENGGLSSN--PSLTIKTNSYHF---------CKLSLVK------------------- 120 (270)
Q Consensus 75 ~~~~l~s~~~--d~~i~~--wd~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~------------------- 120 (270)
+|++++.+.. +..+.+ +|..+-+.+.. +....+.....+ ..+....
T Consensus 134 DGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg 213 (368)
T 1mda_H 134 SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS 213 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC
T ss_pred CCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCC
Confidence 9999998864 457888 88866111000 000000000000 0011100
Q ss_pred -CC-----c--cceecCCCCceEEEeccCc-eeeecc--------------CCCCCeEecCCCCeEEEEec-C-C-----
Q 024245 121 -EP-----Y--ANAKQANEPKDCYEREVGE-TVDTDS--------------LCDSKDDVPAEGPKYMAVAG-E-Q----- 170 (270)
Q Consensus 121 -~~-----~--~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~s~~~~~~~~~~~-~-~----- 170 (270)
.+ . ...... +....+|..... .+...+ .+...++++|++++++++.. . .
T Consensus 214 ~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 214 SQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp SCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred CCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 00 0 000001 223333443221 111111 11112789999998887543 1 1
Q ss_pred CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCCcEEEEEcCCCCcceeeee
Q 024245 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~ 249 (270)
++.+.++|+.+++.+.++.. ......+. |+|+ |+.++++.. .++.|.++|+.+ .+.+.++.
T Consensus 293 ~~~~~ViD~~t~~vv~~i~v-------------g~~p~gi~-~s~D---g~~l~va~~~~~~~VsVID~~t-~kvv~~I~ 354 (368)
T 1mda_H 293 AENTSSVTASVGQTSGPISN-------------GHDSDAII-AAQD---GASDNYANSAGTEVLDIYDAAS-DQDQSSVE 354 (368)
T ss_dssp EEEEEEEESSSCCEEECCEE-------------EEEECEEE-ECCS---SSCEEEEEETTTTEEEEEESSS-CEEEEECC
T ss_pred CCCEEEEECCCCeEEEEEEC-------------CCCcceEE-ECCC---CCEEEEEccCCCCeEEEEECCC-CcEEEEEE
Confidence 23466999999999888873 22467777 9984 543667776 699999999999 88888888
Q ss_pred ccCCCeeEEEeecC
Q 024245 250 VHLEPGLECSMWRN 263 (270)
Q Consensus 250 ~~~~~v~~~~~s~~ 263 (270)
.. .....+++.+.
T Consensus 355 vg-~~P~~i~~~~~ 367 (368)
T 1mda_H 355 LD-KGPESLSVQNE 367 (368)
T ss_dssp CC-SCCCEEECCCC
T ss_pred CC-CCCCEEEeecC
Confidence 54 45667777653
No 201
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.31 E-value=3.4e-12 Score=100.38 Aligned_cols=205 Identities=14% Similarity=0.073 Sum_probs=105.0
Q ss_pred CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (270)
Q Consensus 29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 108 (270)
++..+++++.||.|+.||..+|+.+..+.. . .+.+..+.. ++..+++++.|+.|..||..+++.... .....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~--~~~~~ 79 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---PVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTK--LPFTI 79 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C---CSCCCC-------CCEEECTTTCCEEEC-----CCSEE--CSCCH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C---CceecceEc--CCCEEEEeCCCCEEEEEECCCCceeee--eeccC
Confidence 567899999999999999999999988876 2 244544555 666788888999999999988865431 11110
Q ss_pred ccceEEEEeecc--CCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceee
Q 024245 109 NSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186 (270)
Q Consensus 109 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 186 (270)
.... ..++.. ..........+....+|..+++.+- .+..+....++|++..+++ ++.|+.|+.||.++++.+.
T Consensus 80 ~~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w-~~~~~~~~~~~p~~~~v~~--~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 80 PELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQ-TLSSAFADSLSPSTSLLYL--GRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp HHHH--TTCSCC-----CCCCEEEEEEEEECCC-----------------------EEE--EEEEEEEECCCSSSSSCCC
T ss_pred cccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEE-EecCCCcccccccCCEEEE--EecCCEEEEEECCCCCEEE
Confidence 0000 000000 0000011112223445666555432 2222223456677765554 4558999999999999877
Q ss_pred eeccCcCCCCCCcccCCCceeeeeeecCCCC-CCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCee-EEEeecCC
Q 024245 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGL-ECSMWRNP 264 (270)
Q Consensus 187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~-~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~s~~g 264 (270)
.+.. + ...... +.++. .++ .+++++.||.|+.||.++ ++.+..+.. ..++. ...++++|
T Consensus 155 ~~~~--------~------~~~~~~-~~~~~~~~~--~v~~~~~dg~v~a~d~~t-G~~~W~~~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 155 NATY--------F------DYAASL-PEDDVDYKM--SHFVSNGDGLVVTVDSES-GDVLWIQNY-ASPVVAFYVWQREG 215 (369)
T ss_dssp EEEE--------E------EECCBC-CCCCTTCCC--CEEEEETSCEEEEECTTT-CCEEEEEEC-SSCEEEEEECTTSS
T ss_pred eEec--------c------cccCcc-ccCCccccc--eEEEECCCCEEEEEECCC-CcEEEEecC-CCceEEEEEecCCc
Confidence 7652 1 011122 33210 013 577788999999999998 787777764 34444 35566677
Q ss_pred C
Q 024245 265 I 265 (270)
Q Consensus 265 ~ 265 (270)
.
T Consensus 216 ~ 216 (369)
T 2hz6_A 216 L 216 (369)
T ss_dssp C
T ss_pred e
Confidence 4
No 202
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.28 E-value=1.2e-09 Score=79.97 Aligned_cols=190 Identities=9% Similarity=0.066 Sum_probs=123.8
Q ss_pred cccccccccc--cEEEEEEeCCCCEEEEecCCC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEE-EeC
Q 024245 10 PVAVLRGHRA--SVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGR 84 (270)
Q Consensus 10 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~ 84 (270)
.++++ .|.. -...+.|+ ++.+..+.+.+| .|+++|+++++.+..+.... ........+ .++.|.. .-.
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---~~FgeGit~--~g~~ly~ltw~ 105 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---RYFGEGISD--WKDKIVGLTWK 105 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---TCCEEEEEE--ETTEEEEEESS
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---ccceeEEEE--eCCEEEEEEee
Confidence 34455 3543 35899998 677777777766 89999999999998887543 244443444 3355554 446
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEE
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 164 (270)
++.+.+||..+.+... +++..... ..++++++.++
T Consensus 106 ~~~v~v~D~~t~~~~~----ti~~~~eG-----------------------------------------~glt~dg~~L~ 140 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVR----SFNYDGEG-----------------------------------------WGLTHNDQYLI 140 (262)
T ss_dssp SSEEEEEETTTCCEEE----EEECSSCC-----------------------------------------CCEEECSSCEE
T ss_pred CCEEEEEECccCcEEE----EEECCCCc-----------------------------------------eEEecCCCEEE
Confidence 8899999999887543 33221100 22556777777
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
++.| ++.|.++|..+.+.+.++.. +-.......+..+. |. +|+ ..+..-.++.|.+.|.++ ++.
T Consensus 141 ~SdG--s~~i~~iDp~T~~v~~~I~V-------~~~g~~~~~lNELe-~~----~G~-lyan~w~~~~I~vIDp~t-G~V 204 (262)
T 3nol_A 141 MSDG--TPVLRFLDPESLTPVRTITV-------TAHGEELPELNELE-WV----DGE-IFANVWQTNKIVRIDPET-GKV 204 (262)
T ss_dssp ECCS--SSEEEEECTTTCSEEEEEEC-------EETTEECCCEEEEE-EE----TTE-EEEEETTSSEEEEECTTT-CBE
T ss_pred EECC--CCeEEEEcCCCCeEEEEEEe-------ccCCccccccceeE-EE----CCE-EEEEEccCCeEEEEECCC-CcE
Confidence 6443 57899999999998888773 11000112223344 54 565 556666788999999999 887
Q ss_pred eeeeecc------------CCCeeEEEeecCCCce
Q 024245 245 LTAMKVH------------LEPGLECSMWRNPITM 267 (270)
Q Consensus 245 ~~~~~~~------------~~~v~~~~~s~~g~~l 267 (270)
+..+... ....+.|||+|++..|
T Consensus 205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred EEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence 7777642 1355889999987653
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.26 E-value=9e-09 Score=81.97 Aligned_cols=230 Identities=11% Similarity=-0.009 Sum_probs=132.5
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCC
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENG 96 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~ 96 (270)
.....|+|+++++++++...++.|++||..++......... .... ++|++ +++.|+++..++ .|.+|+...+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---~~~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---KGGK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---CBCB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---CCCc-eeEec--CCCcEEEEecCCCceEEEEEcCCC
Confidence 46889999999998888888899999999877666554432 2234 99999 889998888766 7888887765
Q ss_pred ccCCCCccceec-ccceEEEEeeccCCccceecC-CCCceEEEeccCceeee----c--cCCCC---CeEecCCCCeEEE
Q 024245 97 GLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDT----D--SLCDS---KDDVPAEGPKYMA 165 (270)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~--~~~~~---~~~~s~~~~~~~~ 165 (270)
..... +..... .......+.+.......+... .+.+..++......... . ..+.. .++|+|++..+++
T Consensus 205 ~~~~~-~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 205 WAPTR-IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp TCEEE-EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred ceeEE-eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 42110 000000 111111122222111111211 22234455544432211 1 11222 4899997667776
Q ss_pred EecCCCceEEEEeCCCcceeeeeccCcCCCCCCccc-----CCCceeeeeeecCCCCCCCceEEEEec-CCCcEEEEEcC
Q 024245 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-----KGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIR 239 (270)
Q Consensus 166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~-----~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~i~vwd~~ 239 (270)
+ ...++.|+.|+... + +..+.... ...+... ........++ ++| +|+ ++++-. .++.|+.||+.
T Consensus 284 ~-d~~~~~I~~~~~~g-~-~~~~~g~~--~~~g~~dg~~~~~~~~~P~gia-~d~---dG~-lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 284 S-DQNLSSVYKITPDG-E-CEWFCGSA--TQKTVQDGLREEALFAQPNGMT-VDE---DGN-FYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp E-ETTTTEEEEECTTC-C-EEEEEECT--TCCSCBCEEGGGCBCSSEEEEE-ECT---TCC-EEEEETTTTCEEEEEETT
T ss_pred E-eCCCCEEEEEecCC-C-EEEEEeCC--CCCCcCCCcccccEeCCCeEEE-EeC---CCC-EEEEeCCCCCEEEEEECC
Confidence 4 44578999999763 3 22332100 0001100 0012356676 888 465 777777 88999999987
Q ss_pred CCCcceeeeecc---------------CCCeeEEEeecCCCce
Q 024245 240 NPGIPLTAMKVH---------------LEPGLECSMWRNPITM 267 (270)
Q Consensus 240 ~~~~~~~~~~~~---------------~~~v~~~~~s~~g~~l 267 (270)
+ +. +..+.++ -..+..|+++++|.++
T Consensus 354 ~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~ly 394 (409)
T 3hrp_A 354 D-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYW 394 (409)
T ss_dssp T-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEE
T ss_pred C-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEE
Confidence 6 44 4444443 2458899999988653
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.23 E-value=4.1e-08 Score=74.46 Aligned_cols=220 Identities=7% Similarity=-0.032 Sum_probs=128.4
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
+...+.++++.++|.+.++...++.|..||.. ++. ..+........+.++++.+ ++.++++...++.|..||. ++
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g 129 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DG 129 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TC
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CC
Confidence 34678999999999988887778889999986 332 3333211114589999999 8888887777889999998 44
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d 171 (270)
+... ............+............. ......++. +++........... +++.++|. ++++ ...+
T Consensus 130 ~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~-~~~~ 203 (299)
T 2z2n_A 130 KIRE---YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFV-EIIG 203 (299)
T ss_dssp CEEE---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEE-ETTT
T ss_pred CEEE---ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEE-ccCC
Confidence 3321 11111112222333332222111111 223344554 33332221222111 88899987 4443 3346
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee-eec
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKV 250 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~ 250 (270)
+.|.+||. +++... +... . ....+..+. +.| +|+ ++++...++.|..||. + ++.... +..
T Consensus 204 ~~i~~~~~-~g~~~~-~~~~------~----~~~~~~~i~-~~~---~g~-l~v~~~~~~~i~~~d~-~-g~~~~~~~~~ 264 (299)
T 2z2n_A 204 NKIGRITT-SGEITE-FKIP------T----PNARPHAIT-AGA---GID-LWFTEWGANKIGRLTS-N-NIIEEYPIQI 264 (299)
T ss_dssp TEEEEECT-TCCEEE-EECS------S----TTCCEEEEE-ECS---TTC-EEEEETTTTEEEEEET-T-TEEEEEECSS
T ss_pred ceEEEECC-CCcEEE-EECC------C----CCCCceeEE-ECC---CCC-EEEeccCCceEEEECC-C-CceEEEeCCC
Confidence 88999999 666432 3210 1 123466776 887 455 6666667889999998 3 432221 234
Q ss_pred cCCCeeEEEeecCCCce
Q 024245 251 HLEPGLECSMWRNPITM 267 (270)
Q Consensus 251 ~~~~v~~~~~s~~g~~l 267 (270)
+...+.++++ ++|.+.
T Consensus 265 ~~~~~~~i~~-~~g~l~ 280 (299)
T 2z2n_A 265 KSAEPHGICF-DGETIW 280 (299)
T ss_dssp SSCCEEEEEE-CSSCEE
T ss_pred CCCccceEEe-cCCCEE
Confidence 4567899999 887653
No 205
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=1.2e-09 Score=92.93 Aligned_cols=226 Identities=8% Similarity=0.007 Sum_probs=123.9
Q ss_pred cccccEEEEEEeCCCCEEEE-----ecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC----
Q 024245 16 GHRASVTDVCFHQTKPILFA-----GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG---- 86 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~---- 86 (270)
+|...+..++|||||++||- |+....|++||+.+++.+... ... .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~--~k~~~~~Ws---Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD--VKFSGISWL---GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE--EESCCCEEE---TTTEEEEEESSCCC--
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC--ceeccEEEe---CCCEEEEEEecCcccc
Confidence 46667899999999998883 444568999999999865431 111 112467787 346677666653
Q ss_pred ---------cEEEEEccCCccCCCCccceec-ccceEEE--EeeccCCccceecCC---CCceEEEeccCceeeeccCCC
Q 024245 87 ---------TVKCWDIENGGLSSNPSLTIKT-NSYHFCK--LSLVKEPYANAKQAN---EPKDCYEREVGETVDTDSLCD 151 (270)
Q Consensus 87 ---------~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 151 (270)
.|.+|++.++......++.... +...... ++.++.........+ +...++++..+......+..+
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 4999999876532212222222 2221222 222222111111222 123345555443222222222
Q ss_pred CC---eEecCCCCeEEEEecCC--CceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245 152 SK---DDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (270)
Q Consensus 152 ~~---~~~s~~~~~~~~~~~~~--d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (270)
.. ..++++|..+++.+... .+.|.++|+.++.. ...+. .|.. .+. . |+|+ ++.++
T Consensus 280 ~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~----~~~--~-~s~~---g~~lv 341 (693)
T 3iuj_A 280 LDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--------PERQ----QVL--T-VHSG---SGYLF 341 (693)
T ss_dssp SSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--------CCCS----SCE--E-EEEE---TTEEE
T ss_pred CCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--------cCCC----CEE--E-EEEE---CCEEE
Confidence 22 33788888888765432 36899999987654 33444 2322 122 4 7774 44244
Q ss_pred EEecCCC--cEEEEEcCCCCcceeeeec-cCCCeeEEEeecCCCce
Q 024245 225 LAGYEDG--SILVWDIRNPGIPLTAMKV-HLEPGLECSMWRNPITM 267 (270)
Q Consensus 225 ~~~~~dg--~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l 267 (270)
++...++ .|++||+.. + ....+.. ....+..+.+++++..|
T Consensus 342 ~~~~~~g~~~l~~~d~~g-~-~~~~l~~p~~~~~~~~~~~~d~~~l 385 (693)
T 3iuj_A 342 AEYMVDATARVEQFDYEG-K-RVREVALPGLGSVSGFNGKHDDPAL 385 (693)
T ss_dssp EEEEETTEEEEEEECTTS-C-EEEEECCSSSSEEEECCCCTTCSCE
T ss_pred EEEEECCeeEEEEEECCC-C-eeEEeecCCCceEEeeecCCCCCEE
Confidence 5555555 688898874 3 3344432 33456777788777654
No 206
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.21 E-value=4.9e-09 Score=81.49 Aligned_cols=192 Identities=10% Similarity=-0.035 Sum_probs=109.6
Q ss_pred EEEEEEeCCCCEEEEecCC---------------------------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeC
Q 024245 21 VTDVCFHQTKPILFAGTTG---------------------------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d---------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 73 (270)
+..++|+|+|+.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+|
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~sp- 180 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHR- 180 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEET-
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCC-
Confidence 8999999999988887632 5799999998877455544 2 378999999
Q ss_pred CCCCEEEEEeCCC-------cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-----CCceEEEeccC
Q 024245 74 IGLNKVISQGRDG-------TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-----EPKDCYEREVG 141 (270)
Q Consensus 74 ~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 141 (270)
+| +++++..++ ...+|.+.+++.. .+... ......+..+.......... ....+|.+..+
T Consensus 181 -dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-----~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~ 252 (347)
T 2gop_A 181 -DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-----KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGK 252 (347)
T ss_dssp -TE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-----EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEECSS
T ss_pred -Ce-EEEEEecccccccccccccEEEeCCCceE-----EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEECCC
Confidence 98 777776542 4566655544321 12111 22222233222221111111 12334444322
Q ss_pred ceeeeccCCCCC-----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC
Q 024245 142 ETVDTDSLCDSK-----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS 216 (270)
Q Consensus 142 ~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~ 216 (270)
........+.. +.|+ ++ +++ +++.++.++|| +.+++....+. + ...+.++. |+|
T Consensus 253 -~~~~l~~~~~~~~~~~~~~s-dg--~~~-~~~~~~~~~l~-~~~g~~~~~~~---------~----~~~v~~~~-~s~- 311 (347)
T 2gop_A 253 -EVMGILDEVDRGVGQAKIKD-GK--VYF-TLFEEGSVNLY-IWDGEIKPIAK---------G----RHWIMGFD-VDE- 311 (347)
T ss_dssp -CEEESSTTCCSEEEEEEEET-TE--EEE-EEEETTEEEEE-EESSSEEEEEC---------S----SSEEEEEE-ESS-
T ss_pred -ceEeccccCCcccCCccEEc-Cc--EEE-EEecCCcEEEE-EcCCceEEEec---------C----CCeEEeee-eeC-
Confidence 23333333332 5677 76 444 45568899999 87655433332 1 34567777 887
Q ss_pred CCCCceEEEEecCCCcE-EEEEcCCCCcceeeeeccCCC
Q 024245 217 KSQGFVNVLAGYEDGSI-LVWDIRNPGIPLTAMKVHLEP 254 (270)
Q Consensus 217 ~~~g~~~l~~~~~dg~i-~vwd~~~~~~~~~~~~~~~~~ 254 (270)
. ++++++.++.. .+|.+. ++ ...+..|...
T Consensus 312 -~----~~~~~~~~~~~~~l~~~~--g~-~~~lt~~n~~ 342 (347)
T 2gop_A 312 -I----VVYLKETATRLRELFTWD--GE-EKQLTDYNDP 342 (347)
T ss_dssp -S----EEEEEECSSSCCEEEEES--SS-EEECCCTTST
T ss_pred -c----EEEEEcCCCChHHheEeC--Cc-EEEeccccHh
Confidence 2 77777777664 777765 33 4455555543
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.19 E-value=3.2e-09 Score=79.52 Aligned_cols=193 Identities=7% Similarity=-0.101 Sum_probs=114.1
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
..+.+++++++|+++++.. ++.|.+||....... .+..... ..+.++++.+ +++++++...++.|.+|+..+...
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~-~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGL-NYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSC-SSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCc-CCCcceEECC--CCCEEEEECCCCEEEEEECCCcee
Confidence 5678899999998776666 889999998755433 3322211 4589999999 888777777788999997654432
Q ss_pred CCCCccceecccceEEEEeeccCCccceecC--CCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCce
Q 024245 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSE 173 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~ 173 (270)
.. ...........+.+..... ..... ......++................ +++.++| .++++ ...++.
T Consensus 142 ~~----~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~-~~~~~~ 214 (270)
T 1rwi_B 142 TV----LPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVT-EHNTNQ 214 (270)
T ss_dssp EE----CCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEE-ETTTSC
T ss_pred Ee----eccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEE-ECCCCc
Confidence 11 0111101111222222221 11111 233444554444333222222122 8999999 45553 444688
Q ss_pred EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
|.+||........ +.. .+ ...+..++ +.| +|+ ++++...++.|+++++..
T Consensus 215 v~~~~~~~~~~~~-~~~-------~~----~~~p~~i~-~~~---~g~-l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 215 VVKLLAGSTTSTV-LPF-------TG----LNTPLAVA-VDS---DRT-VYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEECTTCSCCEE-CCC-------CS----CSCEEEEE-ECT---TCC-EEEEEGGGTEEEEECCCG
T ss_pred EEEEcCCCCccee-ecc-------CC----CCCceeEE-ECC---CCC-EEEEECCCCEEEEEcCCC
Confidence 9999987544322 221 11 13466776 887 455 888888999999999886
No 208
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=5e-09 Score=82.61 Aligned_cols=216 Identities=10% Similarity=0.032 Sum_probs=126.9
Q ss_pred CCCCCcccccc------c-ccccEEEEEEeCCCCEEEEecCC------CcEEEEeCCCCceeEEEeecCCC-cceEEEEE
Q 024245 5 PPPPDPVAVLR------G-HRASVTDVCFHQTKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAA-HGIVSVAT 70 (270)
Q Consensus 5 ~~~~~~~~~~~------~-h~~~v~~~~~s~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~ 70 (270)
|..|+.+++++ . -...-..+..+|+| +++++..+ |.|.+.|.++.+.+..+...... .--+.+.|
T Consensus 117 p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~ 195 (462)
T 2ece_A 117 PREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWW 195 (462)
T ss_dssp TTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEE
T ss_pred CCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEE
Confidence 44456666663 0 11234567788999 77776555 78999999999999888643221 22345888
Q ss_pred eeCCCCCEEEEEe-------------------CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCC
Q 024245 71 GPSIGLNKVISQG-------------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131 (270)
Q Consensus 71 ~~~~~~~~l~s~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (270)
+| +++.+++.. .+.+|.+||+.+++... ++...........+.
T Consensus 196 ~p--~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~----tI~vg~~g~~P~~i~------------ 257 (462)
T 2ece_A 196 NL--PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH----SLTLGEENRMALELR------------ 257 (462)
T ss_dssp ET--TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE----EEESCTTEEEEEEEE------------
T ss_pred CC--CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee----EEecCCCCCccceeE------------
Confidence 99 888888874 36899999998865432 222211111111100
Q ss_pred CceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC-----CCceEEEEeCCCcce--eeeeccCcCCCCCCcc----
Q 024245 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-----QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFS---- 200 (270)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-----~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~---- 200 (270)
++|+|++++.+++ +. .+++|.+|....++. .+.+...... ..+..
T Consensus 258 ----------------------f~~~Pdg~~aYV~-~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~-v~~~lp~~~ 313 (462)
T 2ece_A 258 ----------------------PLHDPTKLMGFIN-MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEP-LEGNLPEIL 313 (462)
T ss_dssp ----------------------ECSSTTCCEEEEE-EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEE-CCSSCCGGG
T ss_pred ----------------------eeECCCCCEEEEE-EeeeccCCCceEEEEEecCCceeEEEEEeCCCcc-ccccccccc
Confidence 2358999988764 44 567888876654431 1111100000 00000
Q ss_pred ---cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC--cceeeeeccC--------------CCeeEEEee
Q 024245 201 ---SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTAMKVHL--------------EPGLECSMW 261 (270)
Q Consensus 201 ---~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~--------------~~v~~~~~s 261 (270)
.........+. ++| ||+++.++.-..+.|.+||+..++ +.+..+.-.. .....++++
T Consensus 314 ~~f~~~~~~pa~I~-lS~---DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 314 KPFKAVPPLVTDID-ISL---DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp GGGTEECCCCCCEE-ECT---TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred cccccCCCceeEEE-ECC---CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 00012455666 888 566566666678899999997533 3333333210 136889999
Q ss_pred cCCCce
Q 024245 262 RNPITM 267 (270)
Q Consensus 262 ~~g~~l 267 (270)
|||++|
T Consensus 390 pDGk~L 395 (462)
T 2ece_A 390 RDGRRV 395 (462)
T ss_dssp TTSSEE
T ss_pred CCCCEE
Confidence 999875
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.17 E-value=1.3e-07 Score=71.72 Aligned_cols=220 Identities=7% Similarity=-0.036 Sum_probs=129.0
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
....+.++++.++|.+.++...++.|.+||.. ++... +........+.++++.+ +++++++...++.|..||.. +
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-C
Confidence 45678999999999988887778999999988 55443 32222114589999998 88877777778889999987 4
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d 171 (270)
+... ............+............. ......++.. ++........... +++.++|. +++ +...+
T Consensus 93 ~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v-~~~~~ 166 (300)
T 2qc5_A 93 GFTE---YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWF-TENQN 166 (300)
T ss_dssp CEEE---EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEE-EETTT
T ss_pred CeEE---ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEE-EecCC
Confidence 4321 11111112222333332222111111 2233334444 3332222221111 88889997 444 33346
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee-eec
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKV 250 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~ 250 (270)
+.|..||. +++... +..+ . .......+. +.+ +|. ++++....+.|.+||. + ++.... +..
T Consensus 167 ~~i~~~~~-~g~~~~-~~~~------~----~~~~~~~i~-~d~---~g~-l~v~~~~~~~i~~~~~-~-g~~~~~~~~~ 227 (300)
T 2qc5_A 167 NSIGRITN-TGKLEE-YPLP------T----NAAAPVGIT-SGN---DGA-LWFVEIMGNKIGRITT-T-GEISEYDIPT 227 (300)
T ss_dssp TEEEEECT-TCCEEE-EECS------S----TTCCEEEEE-ECT---TSS-EEEEETTTTEEEEECT-T-CCEEEEECSS
T ss_pred CeEEEECC-CCcEEE-eeCC------C----CCCCcceEE-ECC---CCC-EEEEccCCCEEEEEcC-C-CcEEEEECCC
Confidence 78999998 555443 3210 1 122456666 877 455 6666666778999998 3 443222 333
Q ss_pred cCCCeeEEEeecCCCc
Q 024245 251 HLEPGLECSMWRNPIT 266 (270)
Q Consensus 251 ~~~~v~~~~~s~~g~~ 266 (270)
....+.+++++++|.+
T Consensus 228 ~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 228 PNARPHAITAGKNSEI 243 (300)
T ss_dssp TTCCEEEEEECSTTCE
T ss_pred CCCCceEEEECCCCCE
Confidence 4567889999998864
No 210
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.15 E-value=2.3e-08 Score=85.43 Aligned_cols=197 Identities=8% Similarity=-0.083 Sum_probs=113.3
Q ss_pred EEEEEEeCCCCEEEEecCCCc----------------EEEEeCCCCcee--EEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 21 VTDVCFHQTKPILFAGTTGGE----------------LRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~----------------i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
+..++|+|||+.|+.++.++. |++|++.+++.. ..+........+..+.|+| +|++|+..
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~ 250 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLS 250 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEE
Confidence 567999999999998887766 999999887532 2333322224478999999 99998866
Q ss_pred eC-----CCcEEEEEccC------CccCCCCccceeccc-ceEEEEeeccCCccceecCC---CCceEEEeccCce--ee
Q 024245 83 GR-----DGTVKCWDIEN------GGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQAN---EPKDCYEREVGET--VD 145 (270)
Q Consensus 83 ~~-----d~~i~~wd~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~ 145 (270)
+. +..|.+||+.+ +.. ....+.... .....++............+ .....+++..+.. ..
T Consensus 251 ~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 327 (710)
T 2xdw_A 251 IREGCDPVNRLWYCDLQQESNGITGIL---KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327 (710)
T ss_dssp EECSSSSCCEEEEEEGGGSSSSSCSSC---CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred EEccCCCccEEEEEECcccccccCCcc---ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce
Confidence 54 56899999986 421 011222211 11122333222222111111 1233456555421 12
Q ss_pred eccCCCC--C---eEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245 146 TDSLCDS--K---DDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218 (270)
Q Consensus 146 ~~~~~~~--~---~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~ 218 (270)
....... . ++|++++ .+++ +...|+ .|.+||+.+++.+..+. .+ .+.+..+. ++|+
T Consensus 328 ~l~~~~~~~~~~~~~~~~~~-~lv~-~~~~~g~~~l~~~~~~~g~~~~~l~--------~~----~~~v~~~~-~s~d-- 390 (710)
T 2xdw_A 328 VLVPEHEKDVLEWVACVRSN-FLVL-CYLHDVKNTLQLHDLATGALLKIFP--------LE----VGSVVGYS-GQKK-- 390 (710)
T ss_dssp EEECCCSSCEEEEEEEETTT-EEEE-EEEETTEEEEEEEETTTCCEEEEEC--------CC----SSEEEEEE-CCTT--
T ss_pred eccCCCCCCeEEEEEEEcCC-EEEE-EEEECCEEEEEEEECCCCCEEEecC--------CC----CceEEEEe-cCCC--
Confidence 2222222 1 6677554 5554 444566 46677877787777776 23 34566676 8884
Q ss_pred CCceEEEEec---CCCcEEEEEcCC
Q 024245 219 QGFVNVLAGY---EDGSILVWDIRN 240 (270)
Q Consensus 219 ~g~~~l~~~~---~dg~i~vwd~~~ 240 (270)
+..++++.+ ..+.|++||+.+
T Consensus 391 -~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 391 -DTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp -CSEEEEEEECSSCCCEEEEEETTS
T ss_pred -CCEEEEEEeCCCCCCEEEEEECCC
Confidence 332343333 457899999987
No 211
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.14 E-value=1.2e-08 Score=74.70 Aligned_cols=189 Identities=11% Similarity=0.031 Sum_probs=123.3
Q ss_pred Cccccccccc--ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEE--EEEeeCCCCCEEEEEeC
Q 024245 9 DPVAVLRGHR--ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS--VATGPSIGLNKVISQGR 84 (270)
Q Consensus 9 ~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~s~~~ 84 (270)
+.++++ .|. .-...+.|+. +.+..+.+.+|.|+++|+++++.+..+ ... .... +++.. + ...+..-.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~---~~FgeGit~~g--~-~Ly~ltw~ 114 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG---NIFAEGLASDG--E-RLYQLTWT 114 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT---TCCEEEEEECS--S-CEEEEESS
T ss_pred EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC---CcceeEEEEeC--C-EEEEEEcc
Confidence 344555 343 3457899984 667788888899999999999988887 432 2344 44433 2 44445557
Q ss_pred CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEE
Q 024245 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (270)
Q Consensus 85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 164 (270)
++.+.+||..+.+.+. +++..... ..++++++.++
T Consensus 115 ~~~v~V~D~~Tl~~~~----ti~~~~eG-----------------------------------------wGLt~Dg~~L~ 149 (268)
T 3nok_A 115 EGLLFTWSGMPPQRER----TTRYSGEG-----------------------------------------WGLCYWNGKLV 149 (268)
T ss_dssp SCEEEEEETTTTEEEE----EEECSSCC-----------------------------------------CCEEEETTEEE
T ss_pred CCEEEEEECCcCcEEE----EEeCCCce-----------------------------------------eEEecCCCEEE
Confidence 8899999999887544 33221100 12556778887
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
++.| ++.|.++|..+.+.+.++... -....-.....+. |. +|+ +.+..-.+..|.+.|.++ ++.
T Consensus 150 vSdG--s~~l~~iDp~T~~v~~~I~V~-------~~g~~v~~lNeLe-~~----dG~-lyanvw~s~~I~vIDp~T-G~V 213 (268)
T 3nok_A 150 RSDG--GTMLTFHEPDGFALVGAVQVK-------LRGQPVELINELE-CA----NGV-IYANIWHSSDVLEIDPAT-GTV 213 (268)
T ss_dssp EECS--SSEEEEECTTTCCEEEEEECE-------ETTEECCCEEEEE-EE----TTE-EEEEETTCSEEEEECTTT-CBE
T ss_pred EECC--CCEEEEEcCCCCeEEEEEEeC-------CCCcccccccccE-Ee----CCE-EEEEECCCCeEEEEeCCC-CcE
Confidence 7543 689999999999988887731 1010111234444 54 565 556666788999999999 887
Q ss_pred eeeeecc-------------CCCeeEEEeecCCCce
Q 024245 245 LTAMKVH-------------LEPGLECSMWRNPITM 267 (270)
Q Consensus 245 ~~~~~~~-------------~~~v~~~~~s~~g~~l 267 (270)
+..+... .+..+.|||+|++..|
T Consensus 214 ~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 214 VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI 249 (268)
T ss_dssp EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred EEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence 7776532 1356889999976543
No 212
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.14 E-value=1.6e-08 Score=76.89 Aligned_cols=198 Identities=12% Similarity=0.033 Sum_probs=111.9
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC--CcceEEEEEeeCCCCCEEEEEeC----
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA--AHGIVSVATGPSIGLNKVISQGR---- 84 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~---- 84 (270)
...+..+...+.+++++++|+++++...++.|.+||..+++.......... ...+..++++| +|+++++.+.
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGID 138 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHH
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccc
Confidence 445556777899999999999888887778999999987775543322111 12467899999 9888887321
Q ss_pred -------------CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEec-cCce-e-eec
Q 024245 85 -------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYERE-VGET-V-DTD 147 (270)
Q Consensus 85 -------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~-~~~ 147 (270)
.+.|..++.. ++.. .+.........+.+....... ..........|++. .+.. . ...
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~-----~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~ 212 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-GTLS-----APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH 212 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-SCEE-----EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE
T ss_pred cccccccccccCCCcEEEEECCC-CCEE-----EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE
Confidence 2344444443 3211 111221122222332222222 11222344556665 2322 0 111
Q ss_pred cCCCC----CeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeec-CCCCCCCce
Q 024245 148 SLCDS----KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY-LPSKSQGFV 222 (270)
Q Consensus 148 ~~~~~----~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~p~~~~g~~ 222 (270)
+..+. .++++++|. +++++ ++.|.+||.. ++.+..+.. + .. +.+++ | .| +++
T Consensus 213 ~~~~~~~p~~i~~d~~G~-l~v~~---~~~v~~~~~~-g~~~~~~~~--------~----~~-~~~~~-f~~~---d~~- 269 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAGGL-IWASA---GDGVHVLTPD-GDELGRVLT--------P----QT-TSNLC-FGGP---EGR- 269 (296)
T ss_dssp ECCSSSCCCSEEEBTTSC-EEEEE---TTEEEEECTT-SCEEEEEEC--------S----SC-CCEEE-EEST---TSC-
T ss_pred eeCCCCCCCeEEECCCCC-EEEEc---CCeEEEECCC-CCEEEEEEC--------C----CC-ceeEE-EECC---CCC-
Confidence 11111 299999997 44433 5889999987 777777762 2 22 56666 8 45 455
Q ss_pred EEEEecCCCcEEEEEcCC
Q 024245 223 NVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 223 ~l~~~~~dg~i~vwd~~~ 240 (270)
.|++++.+ .+.-++..+
T Consensus 270 ~L~v~t~~-~l~~~~~~~ 286 (296)
T 3e5z_A 270 TLYMTVST-EFWSIETNV 286 (296)
T ss_dssp EEEEEETT-EEEEEECSC
T ss_pred EEEEEcCC-eEEEEEccc
Confidence 66666665 344445554
No 213
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.13 E-value=2.9e-08 Score=74.68 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=129.3
Q ss_pred Cccccccccc-ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC
Q 024245 9 DPVAVLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG 86 (270)
Q Consensus 9 ~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~ 86 (270)
+.+.++..+. ..+.++.++|+|+++++ .++.|..||. +++.+..+..... ..+.++.+.+ +|+.+++.+. ++
T Consensus 26 ~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~-~~~~~~~~~~--dG~~lv~~~~~~~ 99 (276)
T 3no2_A 26 EIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAG-CEMQTARILP--DGNALVAWCGHPS 99 (276)
T ss_dssp EEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTT-CEEEEEEECT--TSCEEEEEESTTE
T ss_pred eEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCC-ccccccEECC--CCCEEEEecCCCC
Confidence 4455565554 46889999999998884 4678999999 7999988876432 3588899999 9999998877 77
Q ss_pred cEEEEEccCCccCCCCccceecc----cceEEEEeeccCCccce-ecCCCCceEEEeccCceeeeccC-CCCC-eEecCC
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTN----SYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSL-CDSK-DDVPAE 159 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~s~~ 159 (270)
.|..+|. +++.+. .+.+... ................. ....+....++.. ++.+-.... .... +.+.++
T Consensus 100 ~v~~vd~-~Gk~l~--~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~ 175 (276)
T 3no2_A 100 TILEVNM-KGEVLS--KTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDN 175 (276)
T ss_dssp EEEEECT-TSCEEE--EEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTT
T ss_pred EEEEEeC-CCCEEE--EEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCC
Confidence 7777775 444322 0111000 00000011111111111 1122334445554 443322211 1222 677888
Q ss_pred CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC--CCceeeeeeecCCCCCCCceEEEEec--CC-----
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK--GRGMCMAVQAYLPSKSQGFVNVLAGY--ED----- 230 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~--~~~~~~~~~~~~p~~~~g~~~l~~~~--~d----- 230 (270)
|..++ ++..++.|..+|..+++.+.++.. ...+ ....+..+. ..+ +|. ++++.. ..
T Consensus 176 g~~~v--~~~~~~~v~~~d~~tG~~~w~~~~--------~~~~~~~l~~~~~~~-~~~---~G~-i~v~~~~g~~~~~~~ 240 (276)
T 3no2_A 176 GDCLV--ACGDAHCFVQLNLESNRIVRRVNA--------NDIEGVQLFFVAQLF-PLQ---NGG-LYICNWQGHDREAGK 240 (276)
T ss_dssp SCEEE--ECBTTSEEEEECTTTCCEEEEEEG--------GGSBSCCCSEEEEEE-ECT---TSC-EEEEEECTTCTTGGG
T ss_pred CCEEE--EeCCCCeEEEEeCcCCcEEEEecC--------CCCCCccccccccce-EcC---CCC-EEEEeccCccccccc
Confidence 87554 344567899999999999988862 1111 122344454 555 465 555552 11
Q ss_pred -CcEEEEEcCCCCcceeeeeccC--CCeeEE
Q 024245 231 -GSILVWDIRNPGIPLTAMKVHL--EPGLEC 258 (270)
Q Consensus 231 -g~i~vwd~~~~~~~~~~~~~~~--~~v~~~ 258 (270)
+..+++.+...++.+..+.... +.+.++
T Consensus 241 ~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 241 GKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp SCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred cCCceEEEECCCCCEEEEecCcccccceeee
Confidence 2446777744478888876543 345554
No 214
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.13 E-value=2.4e-07 Score=70.24 Aligned_cols=219 Identities=8% Similarity=-0.055 Sum_probs=127.4
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
...+.++++.++|.+.++...++.|..+|.. ++.. .+........+.++++.+ +++++++...++.|..||.. ++
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-SC
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-CC
Confidence 4678999999999988877778889999987 5543 333221114589999998 88888877778889999887 44
Q ss_pred cCCCCccceecccceEEEEeeccCCccceecC--CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d 171 (270)
... ............+....... ..... ......++. .++........... +++.++|. ++++ ....
T Consensus 136 ~~~---~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~-~~~~ 208 (300)
T 2qc5_A 136 IYE---YDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFV-EIMG 208 (300)
T ss_dssp EEE---EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEE-ETTT
T ss_pred EEE---ccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEE-ccCC
Confidence 321 11111112222233332222 22222 222333444 33322222222211 88889885 4443 3345
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce-eeeec
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKV 250 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~ 250 (270)
+.|.+||. +++....... . ....+..++ +.| +|+ ++++...++.|..||.. ++.. ..+..
T Consensus 209 ~~i~~~~~-~g~~~~~~~~-------~----~~~~~~~i~-~d~---~g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~ 269 (300)
T 2qc5_A 209 NKIGRITT-TGEISEYDIP-------T----PNARPHAIT-AGK---NSE-IWFTEWGANQIGRITND--NTIQEYQLQT 269 (300)
T ss_dssp TEEEEECT-TCCEEEEECS-------S----TTCCEEEEE-ECS---TTC-EEEEETTTTEEEEECTT--SCEEEEECCS
T ss_pred CEEEEEcC-CCcEEEEECC-------C----CCCCceEEE-ECC---CCC-EEEeccCCCeEEEECCC--CcEEEEECCc
Confidence 78999998 4554332110 1 123456676 887 455 66666667899999983 3322 22333
Q ss_pred cCCCeeEEEeecCCCce
Q 024245 251 HLEPGLECSMWRNPITM 267 (270)
Q Consensus 251 ~~~~v~~~~~s~~g~~l 267 (270)
....+.+++++++|.+.
T Consensus 270 ~~~~~~~i~~~~~g~l~ 286 (300)
T 2qc5_A 270 ENAEPHGITFGKDGSVW 286 (300)
T ss_dssp TTCCCCCEEECTTSCEE
T ss_pred cCCccceeEeCCCCCEE
Confidence 34568899999988653
No 215
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.12 E-value=6.6e-09 Score=88.54 Aligned_cols=192 Identities=6% Similarity=-0.117 Sum_probs=107.0
Q ss_pred EEEEEeCCCCEEEEecCCCc-------------EEEEeCCCCce--eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 22 TDVCFHQTKPILFAGTTGGE-------------LRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~-------------i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
..++|+|||+.|+.++.|.. |++|++.++.. ...+....+...+..+.|+| +|++|+..+.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~ 248 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRG 248 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEET
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCC
Confidence 67999999999999988776 99999988762 23333322224588999999 999988777665
Q ss_pred ----cEEEEEccCCccCCCCccceeccc-ceEEEEeeccCCccceecC----CCCceEEEeccCce--eeeccCCC-CC-
Q 024245 87 ----TVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQA----NEPKDCYEREVGET--VDTDSLCD-SK- 153 (270)
Q Consensus 87 ----~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~-~~- 153 (270)
.|.+|+..+++.. .+.... ........... ...... ......+++..+.. .......+ ..
T Consensus 249 ~~~~~l~~~~~~~~~~~-----~l~~~~~~~~~~~~~~g~--l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 321 (695)
T 2bkl_A 249 WSENDVYWKRPGEKDFR-----LLVKGVGAKYEVHAWKDR--FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS 321 (695)
T ss_dssp TTEEEEEEECTTCSSCE-----EEEECSSCCEEEEEETTE--EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred CCceEEEEEcCCCCceE-----EeecCCCceEEEEecCCc--EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence 5666655444321 121111 11111111221 111111 12233455544431 12222222 22
Q ss_pred ---eEecCCCCeEEEEecCCCceEEEEeCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe--
Q 024245 154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-- 227 (270)
Q Consensus 154 ---~~~s~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-- 227 (270)
++++ +..+++ +...|+..+||.+. +++....+.. + ..+.+..+. ++|+ +..++++.
T Consensus 322 l~~~~~~--~~~lv~-~~~~dg~~~l~~~~~~g~~~~~l~~--------~---~~~~v~~~~-~s~d---~~~l~~~~ss 383 (695)
T 2bkl_A 322 LLSVSIV--GGHLSL-EYLKDATSEVRVATLKGKPVRTVQL--------P---GVGAASNLM-GLED---LDDAYYVFTS 383 (695)
T ss_dssp EEEEEEE--TTEEEE-EEEETTEEEEEEEETTCCEEEECCC--------S---SSSEECCCB-SCTT---CSEEEEEEEE
T ss_pred EEEEEEE--CCEEEE-EEEECCEEEEEEEeCCCCeeEEecC--------C---CCeEEEEee-cCCC---CCEEEEEEcC
Confidence 5555 445555 55568888887654 3555555541 2 234566666 8884 33233333
Q ss_pred -cCCCcEEEEEcCC
Q 024245 228 -YEDGSILVWDIRN 240 (270)
Q Consensus 228 -~~dg~i~vwd~~~ 240 (270)
...+.|++||+.+
T Consensus 384 ~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 384 FTTPRQIYKTSVST 397 (695)
T ss_dssp TTEEEEEEEEETTT
T ss_pred CCCCCEEEEEECCC
Confidence 2357899999987
No 216
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.11 E-value=8.9e-08 Score=69.57 Aligned_cols=191 Identities=9% Similarity=0.025 Sum_probs=122.7
Q ss_pred Cccccccccc--ccEEEEEEeCCCCEEEEecCC--CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEe
Q 024245 9 DPVAVLRGHR--ASVTDVCFHQTKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQG 83 (270)
Q Consensus 9 ~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~ 83 (270)
+.++++ .|. .-...+.|++ +.+..+.+.+ ..|+++|+.+++.+..+.... ......... .++.|. ..-
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~--~~~~ly~ltw 82 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVA--WRDRLIQLTW 82 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEE--ETTEEEEEES
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEE--eCCEEEEEEe
Confidence 344555 354 4567999987 5666666665 489999999999998886553 233343334 334554 555
Q ss_pred CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (270)
Q Consensus 84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 163 (270)
.++.+.+||..+.+... +++..... ..+++++..+
T Consensus 83 ~~~~v~v~D~~tl~~~~----ti~~~~~G-----------------------------------------wglt~dg~~L 117 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRA----RFRYPGEG-----------------------------------------WALTSDDSHL 117 (243)
T ss_dssp SSSEEEEEETTTTEEEE----EEECSSCC-----------------------------------------CEEEECSSCE
T ss_pred eCCEEEEEECCcCcEEE----EEeCCCCc-----------------------------------------eEEeeCCCEE
Confidence 68899999999886544 33221110 2245677778
Q ss_pred EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
+++-| ++.|.++|..+.+.+.++.. +-....-..+..+. |. +|+ .++..-.+..|.+.|.++ ++
T Consensus 118 ~vSdg--s~~l~~iDp~t~~~~~~I~V-------~~~g~~~~~lNeLe-~~----~G~-lyanvw~s~~I~vIDp~t-G~ 181 (243)
T 3mbr_X 118 YMSDG--TAVIRKLDPDTLQQVGSIKV-------TAGGRPLDNLNELE-WV----NGE-LLANVWLTSRIARIDPAS-GK 181 (243)
T ss_dssp EEECS--SSEEEEECTTTCCEEEEEEC-------EETTEECCCEEEEE-EE----TTE-EEEEETTTTEEEEECTTT-CB
T ss_pred EEECC--CCeEEEEeCCCCeEEEEEEE-------ccCCcccccceeeE-Ee----CCE-EEEEECCCCeEEEEECCC-CC
Confidence 77544 58899999999998888873 11000112233444 44 565 455555677999999999 88
Q ss_pred ceeeeecc-------------CCCeeEEEeecCCCce
Q 024245 244 PLTAMKVH-------------LEPGLECSMWRNPITM 267 (270)
Q Consensus 244 ~~~~~~~~-------------~~~v~~~~~s~~g~~l 267 (270)
.+..+... .+..+.|||+|++..|
T Consensus 182 V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 182 VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 77776522 1356889999976543
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.09 E-value=5e-09 Score=82.07 Aligned_cols=143 Identities=10% Similarity=0.022 Sum_probs=97.0
Q ss_pred cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
.+.. |+.++| ++.+|+++ .++.|++||+.+......+..+. .++.++.+.+ . .+++++.||.|.+||+.+
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~--~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFE--KPVFQLKNVN--N--TLVILNSVNDLSALDLRT 155 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECS--SCEEEEEECS--S--EEEEEETTSEEEEEETTT
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceee--cceeeEEecC--C--CEEEEECCCCEEEEEccC
Confidence 3566 999999 88999998 88999999998876666666666 5588888776 4 388899999999999997
Q ss_pred CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEE
Q 024245 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~ 175 (270)
+.... .. ....+ ++|||+| +++ |..||+++
T Consensus 156 ~~~~~-----~~---~~Vs~--------------------------------------v~WSpkG--~~v--g~~dg~i~ 185 (388)
T 1xip_A 156 KSTKQ-----LA---QNVTS--------------------------------------FDVTNSQ--LAV--LLKDRSFQ 185 (388)
T ss_dssp CCEEE-----EE---ESEEE--------------------------------------EEECSSE--EEE--EETTSCEE
T ss_pred Ccccc-----cc---CCceE--------------------------------------EEEcCCc--eEE--EEcCCcEE
Confidence 75321 00 00000 5699999 332 44589999
Q ss_pred EEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245 176 IWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (270)
Q Consensus 176 iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (270)
+|+...++. ..++..+..- ..| ......+.++. |.++ +. ++++
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~--~~~-~~~~~~V~sI~-wl~~---~~-flv~ 230 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSEL--EEL-PVEEYSPLSVT-ILSP---QD-FLAV 230 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHH--HTS-CTTTSEEEEEE-ESSS---SE-EEEE
T ss_pred EEcCCCccccccceecCCccc--ccc-cCCCeeEEEEE-EecC---Ce-EEEE
Confidence 999887665 5566321000 000 01235788888 9974 44 5544
No 218
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.08 E-value=1.4e-07 Score=74.13 Aligned_cols=148 Identities=7% Similarity=-0.115 Sum_probs=86.0
Q ss_pred EEeCCCCEEEEecC--CC---cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEE
Q 024245 25 CFHQTKPILFAGTT--GG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVK 89 (270)
Q Consensus 25 ~~s~~~~~l~s~~~--dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~ 89 (270)
...|++++++.... .. .|.++|..+++.+..+.... .+ .++++| ++++++.+. .++.|.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~--~p--~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LP--NPVAAH--SGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC--CC--CeEECC--CCCEEEEEeccccccccCCCCCeEE
Confidence 33467887777653 22 78999999999888776543 33 999999 999998775 367899
Q ss_pred EEEccCCccCCCCccceecc---------cceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCCeEecCC
Q 024245 90 CWDIENGGLSSNPSLTIKTN---------SYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 159 (270)
+||..+.+... .+... ......++.+.......... ...+..+| .+++.+.........+.+.|+
T Consensus 101 viD~~t~~~~~----~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~ 175 (373)
T 2mad_H 101 VFDPVTFLPIA----DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPG 175 (373)
T ss_pred EEECCCCcEEE----EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeC
Confidence 99998775433 22111 11112223232222222222 34466678 776655440222122445566
Q ss_pred CCeEEEEecCCCceEEEEeCCCccee
Q 024245 160 GPKYMAVAGEQLSEVEIWDLNTAERC 185 (270)
Q Consensus 160 ~~~~~~~~~~~d~~i~iwd~~~~~~~ 185 (270)
++..+++ .+.||.+.++|. +++..
T Consensus 176 ~~~~~~~-~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 176 APSTFYL-LCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred CCceEEE-EcCCCCEEEEEC-CCcEE
Confidence 6554443 334677777777 55544
No 219
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.05 E-value=1.2e-08 Score=79.75 Aligned_cols=157 Identities=11% Similarity=0.036 Sum_probs=106.0
Q ss_pred EEeCCCCEEEEecC-----CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEE
Q 024245 25 CFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVK 89 (270)
Q Consensus 25 ~~s~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~ 89 (270)
...|+++.++.... ++.|.+.|..+++.+..+.... .+ . ++++| +|++++.++ .++.|.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~--~P-~-va~sp--DG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LP-N-PVVAD--DGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SC-E-EEECT--TSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC--CC-c-EEECC--CCCEEEEEcccccccccCCCCCEEE
Confidence 44688888777755 6799999999999999988655 33 4 99999 999887765 367899
Q ss_pred EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEe
Q 024245 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVA 167 (270)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~ 167 (270)
+||..+.+... .+....... ...+... ++|+|||++++++.
T Consensus 113 viD~~t~~v~~----~I~v~~g~r---------------------------------~~~g~~P~~~a~spDGk~lyVan 155 (386)
T 3sjl_D 113 VFDPVTLLPTA----DIELPDAPR---------------------------------FLVGTYPWMTSLTPDGKTLLFYQ 155 (386)
T ss_dssp EECTTTCCEEE----EEEETTCCC---------------------------------CCBSCCGGGEEECTTSSEEEEEE
T ss_pred EEECCCCeEEE----EEECCCccc---------------------------------cccCCCCceEEEcCCCCEEEEEE
Confidence 99999876433 221100000 0000011 67999999988754
Q ss_pred cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
...++.|.++|+.+++.+.++.. .+ +. . ..|. ..+ .+++.+.||++.+.++.+.++.
T Consensus 156 ~~~~~~VsVID~~t~~vv~tI~v-------------~g-~~--~-~~P~--g~~-~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 156 FSPAPAVGVVDLEGKAFKRMLDV-------------PD-CY--H-IFPT--APD-TFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp CSSSCEEEEEETTTTEEEEEEEC-------------CS-EE--E-EEEE--ETT-EEEEEETTSCEEEEECCSSSCC
T ss_pred cCCCCeEEEEECCCCcEEEEEEC-------------CC-cc--e-eecC--CCc-eeEEECCCCCEEEEECCCCCeE
Confidence 33468999999999999998873 11 11 1 2232 223 5667778888888888763443
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.01 E-value=5.6e-08 Score=75.57 Aligned_cols=227 Identities=7% Similarity=-0.058 Sum_probs=118.8
Q ss_pred ccEEEEEEeCCCCEEEEec--CCCcEEEEeCCCCceeEEEee-----cCCCcceEEEEEeeCCCCCEEEEEeC-----CC
Q 024245 19 ASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWV-----HSAAHGIVSVATGPSIGLNKVISQGR-----DG 86 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~-----d~ 86 (270)
..+..++++++|+++++.. .++.++||.+.+++. ..+.. ..+-..+..+++.+ +++++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDG--NGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECS--SSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcC--CCcEEEEcCCCCcCCCC
Confidence 6899999999999988854 234356666554543 22221 11114589999999 8666555433 57
Q ss_pred cEEEEEccCCccCCCCccceecc----cceEEEEeeccCCccceecC-----CCCceEEEeccCceeeecc---------
Q 024245 87 TVKCWDIENGGLSSNPSLTIKTN----SYHFCKLSLVKEPYANAKQA-----NEPKDCYEREVGETVDTDS--------- 148 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------- 148 (270)
.|.+||+.+++... ...+... ......+.+.......+... ......++...++..+..-
T Consensus 94 ~i~~~d~~tg~~~~--~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 94 KLVAWDTLNNQLSR--VIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEEEETTTTEEEE--EEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred eEEEEECCCCeEEE--EEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 89999999887433 1111100 01112222221111111221 1223344544333222110
Q ss_pred -----C-----------------CCCC-eEecCCCCeEEEEecCCCceEEEEeCCC---cc-----eeeeeccCcCCCCC
Q 024245 149 -----L-----------------CDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNT---AE-----RCTRLHQNSCGGSP 197 (270)
Q Consensus 149 -----~-----------------~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~---~~-----~~~~~~~~~~~~~~ 197 (270)
. .... ++|+|+|+.++++.. ....+..++... +. ....+.. .
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~ 244 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM-HSTSMYRIKSADLSNLQLTDAELGSKIER------Y 244 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES-SCSEEEEEEHHHHTCTTCCHHHHHTTCEE------E
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC-CCCeEEEEEHHHhcCCCCChhhhhcceEe------c
Confidence 0 0011 899999987776433 234555554321 10 0000110 0
Q ss_pred CcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec-cCCCeeEEEeecCCCce
Q 024245 198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPGLECSMWRNPITM 267 (270)
Q Consensus 198 ~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l 267 (270)
++ .+....++ +++ +|. ++++...++.|.+||..+ ++....... +...+.+++|.++|.++
T Consensus 245 g~----~g~pdgia-~d~---~G~-l~va~~~~~~V~~~d~~~-G~~~~~~~~~~~~~p~~va~~~~g~l~ 305 (343)
T 2qe8_A 245 SE----KPICDGIS-IDK---DHN-IYVGDLAHSAIGVITSAD-RAYKLLVTDEKLSWTDSFNFGSDGYLY 305 (343)
T ss_dssp EE----CCSCSCEE-ECT---TCC-EEEEEGGGTEEEEEETTT-TEEEEEEECGGGSCEEEEEECTTSCEE
T ss_pred cc----CCCCceEE-ECC---CCC-EEEEccCCCeEEEEECCC-CCEEEEEECCceecCCeeEECCCCcEE
Confidence 11 11233455 887 455 888888899999999854 443222222 24568999999988653
No 221
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.99 E-value=3.1e-07 Score=70.19 Aligned_cols=199 Identities=10% Similarity=0.035 Sum_probs=112.7
Q ss_pred ccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEE-EeecC--CCcceEEEEEeeCCCCCEEEEEeCC-------
Q 024245 17 HRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSS-SWVHS--AAHGIVSVATGPSIGLNKVISQGRD------- 85 (270)
Q Consensus 17 h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~d------- 85 (270)
+...+.+++++++ |+++++... +.|.+||.. ++.... ..... ....+.++++.+ +|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADY 144 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCC
T ss_pred CCCCCceEEEecCCCcEEEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccc
Confidence 5567899999999 765555543 469999988 665433 22111 113488999999 88887776655
Q ss_pred --------CcEEEEEccCCccCCCCccceecccceEEEEeec--cCCcc--ceec--CCCCceEEEec-cCce----eee
Q 024245 86 --------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV--KEPYA--NAKQ--ANEPKDCYERE-VGET----VDT 146 (270)
Q Consensus 86 --------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~--~~~~~~~~~~~-~~~~----~~~ 146 (270)
+.|..||.. ++... ..... .....+.+. ..+.. .... .......|+.. .++. ...
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~----~~~~~-~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~ 218 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMIQ----VDTAF-QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEEE----EEEEE-SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred cccccCCCCeEEEECCC-CCEEE----eccCC-CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence 456666654 33211 11111 111112222 00222 2222 22344556654 2321 122
Q ss_pred ccCCCC-C----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245 147 DSLCDS-K----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 221 (270)
Q Consensus 147 ~~~~~~-~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~ 221 (270)
.+.++. . ++++++|.. +++. ..++.|.+||..+++.+..+.. + ...+.+++ |+| +|+
T Consensus 219 ~~~~~~~~~p~~i~~d~~G~l-~v~~-~~~~~i~~~d~~~g~~~~~~~~--------~----~~~~~~i~-~~~---dg~ 280 (314)
T 1pjx_A 219 HIPGTHEGGADGMDFDEDNNL-LVAN-WGSSHIEVFGPDGGQPKMRIRC--------P----FEKPSNLH-FKP---QTK 280 (314)
T ss_dssp ECCCCSSCEEEEEEEBTTCCE-EEEE-ETTTEEEEECTTCBSCSEEEEC--------S----SSCEEEEE-ECT---TSS
T ss_pred ECCCCCCCCCCceEECCCCCE-EEEE-cCCCEEEEEcCCCCcEeEEEeC--------C----CCCceeEE-ECC---CCC
Confidence 233332 2 889999964 4433 2368899999987877666652 2 23567777 887 455
Q ss_pred eEEEEecCCCcEEEEEcCCCCc
Q 024245 222 VNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 222 ~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
.++++...++.|..|++...+.
T Consensus 281 ~l~v~~~~~~~l~~~~~~~~g~ 302 (314)
T 1pjx_A 281 TIFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp EEEEEETTTTEEEEEECSSCBC
T ss_pred EEEEEeCCCCeEEEEeCCCCCc
Confidence 3455556678999999886443
No 222
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=4.3e-08 Score=80.02 Aligned_cols=214 Identities=12% Similarity=0.121 Sum_probs=128.1
Q ss_pred CCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEE-e-eCCCCCEEEEEe------------------CCC
Q 024245 28 QTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT-G-PSIGLNKVISQG------------------RDG 86 (270)
Q Consensus 28 ~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~l~s~~------------------~d~ 86 (270)
+||++++.... +..|.+.|+.+.++.+.+..... .....+++ . | ++++++.++ .++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p--~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWP--RSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSS--BCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecC--CCcEEEEecccccccCCCCcccccccccCc
Confidence 37787766554 56799999999998886643322 34788888 4 7 889988774 245
Q ss_pred cEEEEEccCCccCCCCccceec-ccceEEEEe--------eccCC-cc-----------------------ceecCC---
Q 024245 87 TVKCWDIENGGLSSNPSLTIKT-NSYHFCKLS--------LVKEP-YA-----------------------NAKQAN--- 130 (270)
Q Consensus 87 ~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~-~~-----------------------~~~~~~--- 130 (270)
.+.+.|..+.+... ++.. .......++ ..... .. .....+
T Consensus 176 ~vtvID~~t~~v~~----qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 176 VFTAVDADKWEVAW----QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEEEEETTTTEEEE----EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred eEEEEECCCCeEEE----EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 78899988765433 2211 000111111 11000 00 000000
Q ss_pred --CCceEEEecc--Cce-eeeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcc------------eeeeeccC
Q 024245 131 --EPKDCYEREV--GET-VDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------------RCTRLHQN 191 (270)
Q Consensus 131 --~~~~~~~~~~--~~~-~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~------------~~~~~~~~ 191 (270)
+.+.++|..+ ++. +.....+... +.++|||+++++ ++..+.+|.++|+.+.+ ...++.
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V-~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-- 328 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV-AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-- 328 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE-ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--
T ss_pred EECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE-eCCCCCeEEEEECcccccccccccCcccceEEEcC--
Confidence 2244566665 333 2223233333 999999998887 56668999999999653 222222
Q ss_pred cCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC---------CcceeeeeccCCCe-----eE
Q 024245 192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---------GIPLTAMKVHLEPG-----LE 257 (270)
Q Consensus 192 ~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~v-----~~ 257 (270)
.......++ |+| +|. ..++...|+.|.+||+.+. .+.+.++..|-.+- .+
T Consensus 329 -----------vG~gP~h~a-F~~---dG~-aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g 392 (595)
T 1fwx_A 329 -----------LGLGPLHTA-FDG---RGN-AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMG 392 (595)
T ss_dssp -----------CCSCEEEEE-ECT---TSE-EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTT
T ss_pred -----------CCCCcceEE-ECC---CCe-EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccc
Confidence 122355666 998 463 7888889999999998751 34566666554321 34
Q ss_pred EEeecCCCce
Q 024245 258 CSMWRNPITM 267 (270)
Q Consensus 258 ~~~s~~g~~l 267 (270)
+.++|||++|
T Consensus 393 ~t~~~DGk~l 402 (595)
T 1fwx_A 393 ETLDATNDWL 402 (595)
T ss_dssp TSTTCCSSEE
T ss_pred eEeCCCCCEE
Confidence 4668899886
No 223
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.91 E-value=4.9e-06 Score=62.11 Aligned_cols=218 Identities=7% Similarity=-0.041 Sum_probs=121.5
Q ss_pred ccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCC
Q 024245 19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENG 96 (270)
Q Consensus 19 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~ 96 (270)
..+.+++|++++. ++++-...+.|.++++........+.... .....+++.+ ++..|+ +-...+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~p~~ia~d~--~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL--GSPEGIALDH--LGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC--CCEEEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC--CCccEEEEEe--cCCeEEEEECCCCEEEEEEcCCC
Confidence 4567999999655 44555567899999987654433332222 3478999998 655555 5556778999998754
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceecCCC--CceE--EEeccCc--eeeeccCCCCC-eEecCCCCeEEEEecC
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE--PKDC--YEREVGE--TVDTDSLCDSK-DDVPAEGPKYMAVAGE 169 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~--~~~~~~~~~~~-~~~s~~~~~~~~~~~~ 169 (270)
.... + ..........+.+.......+..... ...+ +++.... .+......... +++++++.+++++. .
T Consensus 112 ~~~~--~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d-~ 186 (267)
T 1npe_A 112 QRRV--L--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD-A 186 (267)
T ss_dssp SCEE--E--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEE-T
T ss_pred CEEE--E--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEE-C
Confidence 3211 1 11111112223333221212222211 1222 3332211 11111111111 89999988887754 4
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
..+.|.++|.........+. +. .....++ .. ++. ++++....+.|..+|..+ ++.+..+.
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~--------~~-----~~P~gi~-~d----~~~-lyva~~~~~~v~~~d~~~-g~~~~~i~ 246 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLE--------GL-----QYPFAVT-SY----GKN-LYYTDWKTNSVIAMDLAI-SKEMDTFH 246 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEE--------CC-----CSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-TEEEEEEC
T ss_pred CCCEEEEEecCCCceEEEec--------CC-----CCceEEE-Ee----CCE-EEEEECCCCeEEEEeCCC-CCceEEEc
Confidence 46899999997544333332 11 1123333 32 233 666666778999999988 77777776
Q ss_pred ccC-CCeeEEEeecCCC
Q 024245 250 VHL-EPGLECSMWRNPI 265 (270)
Q Consensus 250 ~~~-~~v~~~~~s~~g~ 265 (270)
... .....+++.|++.
T Consensus 247 ~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 247 PHKQTRLYGITIALSQC 263 (267)
T ss_dssp CSSCCCCCCEEEECSCC
T ss_pred cccccccceeeecCccC
Confidence 433 2578999999875
No 224
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.89 E-value=1.9e-07 Score=80.14 Aligned_cols=198 Identities=10% Similarity=0.045 Sum_probs=107.4
Q ss_pred EEEEEeCCCCEEEEecCCCc--------------EEEEeCCCCce--eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 22 TDVCFHQTKPILFAGTTGGE--------------LRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~--------------i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
..++|+|| +.|+.++.++. |++|++.++.. ...+........+..+.|+| +|++|+..+.+
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~ 288 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSE 288 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEEC
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEc
Confidence 57899999 88888776654 89999977653 22333332213488999999 99988876654
Q ss_pred C-----cEEEEEccCCccCCCCccceecc-cceEEEEeeccCCccceecCC---CCceEEEeccC-ceeeeccCCCCC-e
Q 024245 86 G-----TVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQAN---EPKDCYEREVG-ETVDTDSLCDSK-D 154 (270)
Q Consensus 86 ~-----~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~-~ 154 (270)
+ .|.+||+.++... +...+... ......+.............+ .....+++... ......+..+.. +
T Consensus 289 ~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l 366 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKIG--PVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNL 366 (741)
T ss_dssp TTCSCCEEEEEEEETTEEC--CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEE
T ss_pred cCCCcceEEEEECCCCCCc--ccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeE
Confidence 3 8999999876211 01111111 111122222222111111111 12344555543 223333333333 2
Q ss_pred -EecCCCCeEEEEecCCCceEEEEeCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe---cC
Q 024245 155 -DVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YE 229 (270)
Q Consensus 155 -~~s~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~---~~ 229 (270)
.+++.+..+++ +...|+..+||.+. +++....+.. + ..+.+..+. ++|+ +..++++. ..
T Consensus 367 ~~~~~~~~~lv~-~~~~dg~~~l~~~~~~g~~~~~l~~--------~---~~~~v~~~~-~s~d---~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 367 ESVGIAGNRLFA-SYIHDAKSQVLAFDLDGKPAGAVSL--------P---GIGSASGLS-GRPG---DRHAYLSFSSFTQ 430 (741)
T ss_dssp EEEEEEBTEEEE-EEEETTEEEEEEEETTSCEEEECBC--------S---SSCEEEEEE-CCBT---CSCEEEEEEETTE
T ss_pred EEEEEECCEEEE-EEEECCEEEEEEEeCCCCceeeccC--------C---CCeEEEEee-cCCC---CCEEEEEEcCCCC
Confidence 23334556665 45567877777554 3555555541 1 234566676 8885 33133333 34
Q ss_pred CCcEEEEEcCC
Q 024245 230 DGSILVWDIRN 240 (270)
Q Consensus 230 dg~i~vwd~~~ 240 (270)
.+.|++||+.+
T Consensus 431 P~~i~~~d~~t 441 (741)
T 1yr2_A 431 PATVLALDPAT 441 (741)
T ss_dssp EEEEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 57899999987
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.87 E-value=8.4e-07 Score=75.24 Aligned_cols=211 Identities=10% Similarity=0.067 Sum_probs=122.3
Q ss_pred EEEEEeCCCCEEEEecCCC-------------------cEEEEeCCCCceeEEEeecCC-------CcceEEEEEeeCCC
Q 024245 22 TDVCFHQTKPILFAGTTGG-------------------ELRIWDTVQHRTVSSSWVHSA-------AHGIVSVATGPSIG 75 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~ 75 (270)
..++++|++.+++.++.++ .|..+|..+++.+..++...+ ......+.... +
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~--d 323 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI--A 323 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE--T
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc--C
Confidence 4678899888888877664 599999999999888764321 01223344445 6
Q ss_pred C---CEEEEEeCCCcEEEEEccCCccCCCCccceecccce-EEEEeeccCCccceecCCCCceEEEeccCc--eeeeccC
Q 024245 76 L---NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSL 149 (270)
Q Consensus 76 ~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 149 (270)
| ..++.++.+|.+.++|.++++.+. ..+..... ...+.....+. ..... . + .++ .+.....
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~----~~~~~~~~~~~~~d~~g~~~----~~~~~-~-~---~~~~~~~~P~~~ 390 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFIS----AKNFVPVNWASGYDKHGKPI----GIAAA-R-D---GSKPQDAVPGPY 390 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEE----EEESSCCSSEEEECTTSCEE----ECGGG-G-C---TTSCEECSSCTT
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEec----cccccccCcccccCCCCcee----ecccc-C-c---CCCccEECcCcc
Confidence 6 678899999999999999997643 22211110 00000000000 00000 0 0 000 0000111
Q ss_pred CCCC---eEecCCCCeEEEEecC-----------------------------------------CCceEEEEeCCCccee
Q 024245 150 CDSK---DDVPAEGPKYMAVAGE-----------------------------------------QLSEVEIWDLNTAERC 185 (270)
Q Consensus 150 ~~~~---~~~s~~~~~~~~~~~~-----------------------------------------~d~~i~iwd~~~~~~~ 185 (270)
+... ++++|+...+++.+.. ..+.|..||+.+++.+
T Consensus 391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~ 470 (677)
T 1kb0_A 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (677)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence 1111 6778877666543210 1378999999999988
Q ss_pred eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC-CCeeEEEeecCC
Q 024245 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPGLECSMWRNP 264 (270)
Q Consensus 186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~s~~g 264 (270)
.++.. + . ..+... +.. ++. +++.++.||.+++||.++ ++.+..+.... ....-+.|..+|
T Consensus 471 W~~~~-------~--~----~~~~g~-~~~---~g~-~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~~~~~~p~~y~~~G 531 (677)
T 1kb0_A 471 WSVEH-------V--S----PWNGGT-LTT---AGN-VVFQGTADGRLVAYHAAT-GEKLWEAPTGTGVVAAPSTYMVDG 531 (677)
T ss_dssp EEEEE-------S--S----SCCCCE-EEE---TTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETT
T ss_pred eecCC-------C--C----CCcCcc-eEe---CCC-EEEEECCCCcEEEEECCC-CceeeeeeCCCCcccCCEEEEeCC
Confidence 88763 1 1 111111 333 233 777889999999999999 88888887433 223346667777
Q ss_pred Cc
Q 024245 265 IT 266 (270)
Q Consensus 265 ~~ 266 (270)
+.
T Consensus 532 ~~ 533 (677)
T 1kb0_A 532 RQ 533 (677)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 226
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.84 E-value=9.8e-06 Score=61.82 Aligned_cols=217 Identities=7% Similarity=-0.041 Sum_probs=116.4
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCC
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENG 96 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~ 96 (270)
.....++|+++|+++++-..++.|..||... +....+.. . .....+++.+ +++++++....+ .|..+|..++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~--~~p~gia~~~--dG~l~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-E--GKVSGLAFTS--NGDLVATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-S--SEEEEEEECT--TSCEEEEEECTTSCEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-C--CCceeEEEcC--CCcEEEEeccCCcceEEEEcCCCC
Confidence 5678999999999777777889999999875 33333332 2 4488999999 888666554332 4666676666
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEecc--Cc-eee---e-----ccCCC-CC-eEecCCCCeE
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV--GE-TVD---T-----DSLCD-SK-DDVPAEGPKY 163 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~---~-----~~~~~-~~-~~~s~~~~~~ 163 (270)
+... +......... ..... ...............+|.+.. ++ .+. . ..... .. -.++++++++
T Consensus 106 ~~~~--~~~~~~~~~~-~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~l 181 (306)
T 2p4o_A 106 TVET--LLTLPDAIFL-NGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL 181 (306)
T ss_dssp CEEE--EEECTTCSCE-EEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred eEEE--EEeCCCcccc-Ccccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEE
Confidence 5321 1111111111 11111 111111222222234443332 21 111 0 00111 11 2338888877
Q ss_pred EEEecCCCceEEEEeCCC-cce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 164 MAVAGEQLSEVEIWDLNT-AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 164 ~~~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+++ -...+.|..||+.. ++. ...+.. ......++ +.+ +|. ++++....+.|.++|..
T Consensus 182 yv~-d~~~~~I~~~~~~~~g~~~~~~~~~~-------------~~~P~gi~-vd~---dG~-l~va~~~~~~V~~~~~~- 241 (306)
T 2p4o_A 182 YVS-NTEKMLLLRIPVDSTDKPGEPEIFVE-------------QTNIDDFA-FDV---EGN-LYGATHIYNSVVRIAPD- 241 (306)
T ss_dssp EEE-ETTTTEEEEEEBCTTSCBCCCEEEEE-------------SCCCSSEE-EBT---TCC-EEEECBTTCCEEEECTT-
T ss_pred EEE-eCCCCEEEEEEeCCCCCCCccEEEec-------------cCCCCCeE-ECC---CCC-EEEEeCCCCeEEEECCC-
Confidence 764 44578999999874 321 111110 01223344 776 465 66666677889999865
Q ss_pred CCcc--eeeeeccCCCeeEEEee---cCCCc
Q 024245 241 PGIP--LTAMKVHLEPGLECSMW---RNPIT 266 (270)
Q Consensus 241 ~~~~--~~~~~~~~~~v~~~~~s---~~g~~ 266 (270)
++. +..+......+++++|. ||+..
T Consensus 242 -G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~ 271 (306)
T 2p4o_A 242 -RSTTIIAQAEQGVIGSTAVAFGQTEGDCTA 271 (306)
T ss_dssp -CCEEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred -CCEEEEeecccccCCceEEEEecccCCCCE
Confidence 443 22333333568999998 78654
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.83 E-value=7.7e-07 Score=75.62 Aligned_cols=214 Identities=11% Similarity=0.068 Sum_probs=120.5
Q ss_pred EEEEEeCCCCEEEEecCCCc-------------------EEEEeCCCCceeEEEeecCCC-------cceEEEEEeeCCC
Q 024245 22 TDVCFHQTKPILFAGTTGGE-------------------LRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIG 75 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~ 75 (270)
..+++.|++.+++.++.++. |..+|.++|+.+..++...+. .++....... +
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--~ 315 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI--D 315 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--T
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc--C
Confidence 36789998888888887763 999999999999887653210 1122223333 4
Q ss_pred CC---EEEEEeCCCcEEEEEccCCccCCCCccceecccce-EEEEeec-cCCccceecCCCCceEEEeccCc--eeeecc
Q 024245 76 LN---KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLV-KEPYANAKQANEPKDCYEREVGE--TVDTDS 148 (270)
Q Consensus 76 ~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 148 (270)
|. .++.++.+|.++++|.++++.+. ..+..... ...+... ..+.. ... ..+.....+ ......
T Consensus 316 G~~~~~v~~~~~~G~l~~lD~~tG~~l~----~~~~~~~~w~~~~~~~~~~pi~---~~~---~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 316 GKPRKVLMQAPKNGFFYVIDRATGELLS----AKGIVPQSWTKGMDMKTGRPIL---DEE---NAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEE----EEESSCCSSEEEEETTTTEEEE---CHH---HHCTTTSSSCEEESSCT
T ss_pred CcEEEEEEEECCCCeEEEEECCCCCEec----cccccccccccccCccCCCccc---chh---hccccCCCCeeEeCCCc
Confidence 44 78899999999999999997643 11111100 0000000 00000 000 000000000 000000
Q ss_pred CCCCC---eEecCCCCeEEEEec-------------------------------------------CCCceEEEEeCCCc
Q 024245 149 LCDSK---DDVPAEGPKYMAVAG-------------------------------------------EQLSEVEIWDLNTA 182 (270)
Q Consensus 149 ~~~~~---~~~s~~~~~~~~~~~-------------------------------------------~~d~~i~iwd~~~~ 182 (270)
.+... ++++|+...+++.+. ..+|.|+.||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 11111 566666554443211 01488999999999
Q ss_pred ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC-eeEEEee
Q 024245 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-GLECSMW 261 (270)
Q Consensus 183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~s 261 (270)
+.+.++.. +.. ..+.. +.. .+. +++.|+.||.|+.||.++ ++.+..++..... ..-+.|.
T Consensus 466 ~~~W~~~~--------~~~-~~~g~-----~~t---agg-lvf~gt~dg~l~a~D~~t-G~~lw~~~~~~~~~~~p~ty~ 526 (689)
T 1yiq_A 466 QAAWEVPY--------VTI-FNGGT-----LST---AGN-LVFEGSADGRVIAYAADT-GEKLWEQPAASGVMAAPVTYS 526 (689)
T ss_dssp EEEEEEEE--------SSS-CCCCE-----EEE---TTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEE
T ss_pred CeEeEccC--------CCC-ccCcc-----ceE---CCC-EEEEECCCCcEEEEECCC-CccceeeeCCCCcccCceEEE
Confidence 99888873 211 11111 332 233 888899999999999999 8888888754332 2447778
Q ss_pred cCCCc
Q 024245 262 RNPIT 266 (270)
Q Consensus 262 ~~g~~ 266 (270)
.||+.
T Consensus 527 ~~G~q 531 (689)
T 1yiq_A 527 VDGEQ 531 (689)
T ss_dssp ETTEE
T ss_pred ECCEE
Confidence 88864
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.83 E-value=3.7e-07 Score=72.52 Aligned_cols=151 Identities=11% Similarity=0.013 Sum_probs=98.1
Q ss_pred CCCCEEEEecC-C----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEEEEE
Q 024245 28 QTKPILFAGTT-G----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWD 92 (270)
Q Consensus 28 ~~~~~l~s~~~-d----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~~wd 92 (270)
+++..++.... + +.|.++|..+++.+..+.... .+ .++++| ++++|+.+. .++.|.++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--LP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--SC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--CC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEE
Confidence 36665555443 2 699999999999999998665 44 899999 999888765 467899999
Q ss_pred ccCCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245 93 IENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d 171 (270)
..+.+... .+... ..... .......+.|+|||++++++....+
T Consensus 156 ~~t~~vv~----~I~v~g~~r~~--------------------------------~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 156 PVTFLPIA----DIELPDAPRFL--------------------------------VGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp TTTCCEEE----EEEETTCCCCC--------------------------------BSCCGGGSEECTTSSEEEEEECSSS
T ss_pred CCCCcEEE----EEECCCccccc--------------------------------cCCCcceEEEcCCCCEEEEEecCCC
Confidence 99886533 22110 00000 0000011679999999887543336
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+.|.+.|+.+++.+.++.. .+. .. ..|.+ .+ .+++.+.||.+.+.+..+
T Consensus 200 ~~VsVID~~t~kvv~~I~v-------------~g~---~~-~~p~g--~~-~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDV-------------PDC---YH-IFPAS--PT-VFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp CEEEEEETTTTEEEEEEEC-------------CSE---EE-EEEEE--TT-EEEEEETTSSEEEEECCT
T ss_pred CeEEEEECCCCeEEEEEEc-------------CCc---ee-eccCC--Cc-EEEEEcCCCCEEEEECCC
Confidence 8999999999999888873 111 11 33321 12 555666777777777744
No 229
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.81 E-value=2.5e-06 Score=64.79 Aligned_cols=186 Identities=10% Similarity=-0.052 Sum_probs=100.5
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeec--CCCcceEEEEEeeCCCCCEEEEEeC---------C
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH--SAAHGIVSVATGPSIGLNKVISQGR---------D 85 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~---------d 85 (270)
....+.+++++++|+++++. ++.|.+||.++++........ .....+..+++.| +|+++++... .
T Consensus 52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCT
T ss_pred CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccC
Confidence 34678999999999966554 457999999877654333221 1114578999999 8887765432 2
Q ss_pred CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC--CCCceEEEe--ccCce----eeeccCCC---CC-
Q 024245 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYER--EVGET----VDTDSLCD---SK- 153 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~----~~~~~~~~---~~- 153 (270)
..-.+|.+....... ...........+.+.......+... ...+..+++ .++.. ....+... ..
T Consensus 128 ~~~~l~~~d~~g~~~----~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g 203 (297)
T 3g4e_A 128 HQGALYSLFPDHHVK----KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG 203 (297)
T ss_dssp TCEEEEEECTTSCEE----EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred CCcEEEEEECCCCEE----EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence 334666665332111 1111111111222222221122222 233344554 23321 11112211 11
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecC-CCCCCCceEEEEec
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-PSKSQGFVNVLAGY 228 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-p~~~~g~~~l~~~~ 228 (270)
+++.++|. ++++. ..++.|.+||..+++.+..+.. + ...+.+++ |. |+ ++.++++..
T Consensus 204 ~~~d~~G~-lwva~-~~~~~v~~~d~~tG~~~~~i~~--------p----~~~~t~~~-f~g~d---~~~L~vt~~ 261 (297)
T 3g4e_A 204 MCIDAEGK-LWVAC-YNGGRVIRLDPVTGKRLQTVKL--------P----VDKTTSCC-FGGKN---YSEMYVTCA 261 (297)
T ss_dssp EEEBTTSC-EEEEE-ETTTEEEEECTTTCCEEEEEEC--------S----SSBEEEEE-EESGG---GCEEEEEEB
T ss_pred eEECCCCC-EEEEE-cCCCEEEEEcCCCceEEEEEEC--------C----CCCceEEE-EeCCC---CCEEEEEcC
Confidence 89999996 44433 3357899999998998888873 2 23567777 97 63 332444443
No 230
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.70 E-value=5.4e-06 Score=66.00 Aligned_cols=199 Identities=9% Similarity=-0.057 Sum_probs=107.0
Q ss_pred EEEeCCCCEEEEecCCC--cEEEEeCCCCceeEEE---ee-cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 24 VCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSS---WV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 24 ~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
++|+++++.|+++..++ .|.+++...+.....+ .. .. ..+.+++++| ++..|+.+..++.|..||..++.
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~--~~p~~iav~p--~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS--GKIGAVALDE--TEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC--SCCCBCEECT--TSSEEEEECTTCEEEEEETTTCC
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc--CCcEEEEEeC--CCCeEEEEECCCcEEEEECCCCC
Confidence 89999999888888766 7889988766544443 11 22 4578899999 66677777778899999998764
Q ss_pred cCCCCccc--eeccc-ce-EEEEeeccCCccceecCCCCceEEEeccCceeeec------------------cCCCCCeE
Q 024245 98 LSSNPSLT--IKTNS-YH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD------------------SLCDSKDD 155 (270)
Q Consensus 98 ~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 155 (270)
... ... ..... .. ...+.+.......+........++.+......... +.....++
T Consensus 252 ~~~--~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia 329 (409)
T 3hrp_A 252 VTL--IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMT 329 (409)
T ss_dssp EEE--EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred EEE--EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence 311 100 00000 00 00222222112222223222333322211111110 11111189
Q ss_pred ecCCCCeEEEEecC-CCceEEEEeCCCcceeeeeccCcCCCCCCccc-----CCCceeeeeeecCCCCCCCceEEEEecC
Q 024245 156 VPAEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-----KGRGMCMAVQAYLPSKSQGFVNVLAGYE 229 (270)
Q Consensus 156 ~s~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~-----~~~~~~~~~~~~~p~~~~g~~~l~~~~~ 229 (270)
++++|. +++ +-. .++.|+.||+.+++.......... .+... ........++ ++|+ |. ++++-..
T Consensus 330 ~d~dG~-lyv-ad~~~~~~I~~~~~~~G~v~~~~g~~~~---~g~~~g~~~~~~~~~P~gia-vd~~---g~-lyVad~~ 399 (409)
T 3hrp_A 330 VDEDGN-FYI-VDGFKGYCLRKLDILDGYVSTVAGQVDV---ASQIDGTPLEATFNYPYDIC-YDGE---GG-YWIAEAW 399 (409)
T ss_dssp ECTTCC-EEE-EETTTTCEEEEEETTTTEEEEEEECTTC---BSCCCBSTTTCCBSSEEEEE-ECSS---SE-EEEEEST
T ss_pred EeCCCC-EEE-EeCCCCCEEEEEECCCCEEEEEeCCCCC---CCcCCCChhceEeCCceEEE-EcCC---CC-EEEEECC
Confidence 999997 554 344 578999999877764332221000 00000 0112455666 7773 44 6777777
Q ss_pred CCcEEEEEc
Q 024245 230 DGSILVWDI 238 (270)
Q Consensus 230 dg~i~vwd~ 238 (270)
++.|+.+++
T Consensus 400 n~~Ir~i~~ 408 (409)
T 3hrp_A 400 GKAIRKYAV 408 (409)
T ss_dssp TCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 778877765
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.64 E-value=2.2e-06 Score=67.79 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=106.4
Q ss_pred CCCCEE-EEecCCCcEEEEeCCCC----ceeEEEee-----cCCCcceEEEEEeeCCCCCEEEEEeCC------CcEEEE
Q 024245 28 QTKPIL-FAGTTGGELRIWDTVQH----RTVSSSWV-----HSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCW 91 (270)
Q Consensus 28 ~~~~~l-~s~~~dg~i~vwd~~~~----~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~w 91 (270)
+++++| +++..++.|.|+|+.+. +.++++.. ..+...-..+...| +| .++++..+ +.|.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCCCeEEEE
Confidence 667755 55777899999999755 55555520 00102356678889 87 76766555 689999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec---
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG--- 168 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~--- 168 (270)
|.++.+.+. ..+..... ..+. ..+-|+|+++.++. +.
T Consensus 170 D~~T~~v~~----~~~~~~~~-~~~~----------------------------------Yd~~~~p~~~~mvs-S~wg~ 209 (462)
T 2ece_A 170 DHYSFEPLG----KWEIDRGD-QYLA----------------------------------YDFWWNLPNEVLVS-SEWAV 209 (462)
T ss_dssp CTTTCCEEE----ECCSBCTT-CCCC----------------------------------CCEEEETTTTEEEE-CBCCC
T ss_pred ECCCCeEEE----EEccCCCC-cccc----------------------------------ceEEECCCCCEEEE-ccCcC
Confidence 998876543 22111000 0000 00336888885553 31
Q ss_pred ---------------CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeee-ecCCCCCCCceEEEEec----
Q 024245 169 ---------------EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGY---- 228 (270)
Q Consensus 169 ---------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~p~~~~g~~~l~~~~---- 228 (270)
..+.+|.+||+.+++.+.++.. +. .......+. +|+|+ +++.++++-
T Consensus 210 p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v-------g~---~g~~P~~i~f~~~Pd---g~~aYV~~e~~~~ 276 (462)
T 2ece_A 210 PNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL-------GE---ENRMALELRPLHDPT---KLMGFINMVVSLK 276 (462)
T ss_dssp HHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES-------CT---TEEEEEEEEECSSTT---CCEEEEEEEEETT
T ss_pred ccccccccchhhhhhccCCEEEEEECCCCcEeeEEec-------CC---CCCccceeEeeECCC---CCEEEEEEeeecc
Confidence 2368999999999888888874 11 011222232 15884 553444454
Q ss_pred -CCCcEEEEEcCCCCc--ceeee--ec----------------cCCCeeEEEeecCCCce
Q 024245 229 -EDGSILVWDIRNPGI--PLTAM--KV----------------HLEPGLECSMWRNPITM 267 (270)
Q Consensus 229 -~dg~i~vwd~~~~~~--~~~~~--~~----------------~~~~v~~~~~s~~g~~l 267 (270)
.+++|.+|.... ++ ..+.+ .. -...+..|.+||||++|
T Consensus 277 ~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 277 DLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp TCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred CCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence 677888776654 32 11111 00 02357889999999875
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.59 E-value=2.3e-05 Score=60.81 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=59.4
Q ss_pred ccccccEEEEEEeCCCCEEEEecC-----CCcEEEEeCCCCceeEEEeecC----CCcceEEEEEeeCCCCCEE-EEEe-
Q 024245 15 RGHRASVTDVCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHS----AAHGIVSVATGPSIGLNKV-ISQG- 83 (270)
Q Consensus 15 ~~h~~~v~~~~~s~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l-~s~~- 83 (270)
.+|-..+.+++++++|+++++-.. ++.|.+||+.+++.+..+.... ....+..+++.+ ++..+ ++-.
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~--~~g~~yvtd~~ 140 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDL--IHNFVYISDPA 140 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEET--TTTEEEEEECC
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEec--CCCEEEEEcCc
Confidence 346678999999999886665433 5789999999998777765431 113468999997 54444 5555
Q ss_pred --CCCcEEEEEccCCcc
Q 024245 84 --RDGTVKCWDIENGGL 98 (270)
Q Consensus 84 --~d~~i~~wd~~~~~~ 98 (270)
.++.|.+||+.+++.
T Consensus 141 ~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SGGGCEEEEEETTTCCE
T ss_pred cCCCCeEEEEECCCCCE
Confidence 678999999987654
No 233
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.58 E-value=6.6e-05 Score=57.79 Aligned_cols=185 Identities=11% Similarity=0.016 Sum_probs=96.3
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeec--CCCcceEEEEEeeCCCCCEEEEEeCC----CcEEEE
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH--SAAHGIVSVATGPSIGLNKVISQGRD----GTVKCW 91 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~d----~~i~~w 91 (270)
...+.+++|+++|+++++. .+ .|.+||..+++........ .....+..++++| +|+++++...+ +...||
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEE
Confidence 4578999999999877765 44 4999999887654332211 1113588999999 88876654322 234455
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecC--CCCceEEEec--cC-ce----eeeccCCCCC----eEecC
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYERE--VG-ET----VDTDSLCDSK----DDVPA 158 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~-~~----~~~~~~~~~~----~~~s~ 158 (270)
.+.+++... +.........+.+........... ...+..+++. ++ .. ....+..... +++.+
T Consensus 165 ~~~~g~~~~-----~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 165 HVAKGKVTK-----LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA 239 (326)
T ss_dssp EEETTEEEE-----EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred EEeCCcEEE-----eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence 444443211 111111111222222221122222 2334445553 33 21 1111221111 88899
Q ss_pred CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecC-CCCCCCceEEEEecCC
Q 024245 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-PSKSQGFVNVLAGYED 230 (270)
Q Consensus 159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-p~~~~g~~~l~~~~~d 230 (270)
+|..++ ++. .++.|.+||. +++.+..+.. + ...+.+++ |. |+ ++.++++...+
T Consensus 240 ~G~lwv-a~~-~~~~v~~~d~-~g~~~~~i~~--------~----~~~~~~~a-f~g~d---~~~L~vt~~~~ 293 (326)
T 2ghs_A 240 EGHIWN-ARW-GEGAVDRYDT-DGNHIARYEV--------P----GKQTTCPA-FIGPD---ASRLLVTSARE 293 (326)
T ss_dssp TSCEEE-EEE-TTTEEEEECT-TCCEEEEEEC--------S----CSBEEEEE-EESTT---SCEEEEEEBCT
T ss_pred CCCEEE-EEe-CCCEEEEECC-CCCEEEEEEC--------C----CCCcEEEE-EecCC---CCEEEEEecCC
Confidence 996444 332 2478999998 5777666662 1 22466776 87 63 33244444444
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.57 E-value=1.5e-05 Score=60.72 Aligned_cols=189 Identities=8% Similarity=-0.048 Sum_probs=102.9
Q ss_pred ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC--CcceEEEEEeeCCCCCEEEE----EeC
Q 024245 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA--AHGIVSVATGPSIGLNKVIS----QGR 84 (270)
Q Consensus 11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s----~~~ 84 (270)
+..+..+...+..++++++|+++++...++.|.+|+.. ++.......... ...+..+++.| +|+++++ +..
T Consensus 78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~ 154 (305)
T 3dr2_A 78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLR 154 (305)
T ss_dssp EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGS
T ss_pred EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCcc
Confidence 34455566778999999999977776667889999986 543322211110 12367899999 9888876 332
Q ss_pred -------------CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-------CCceEEEeccCc--
Q 024245 85 -------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-------EPKDCYEREVGE-- 142 (270)
Q Consensus 85 -------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-- 142 (270)
.+.|..||..+++... + ... .....+.+............ ..+..+++....
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~~~--~--~~~--~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~ 228 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSPLQR--M--ADL--DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH 228 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCCCEE--E--EEE--SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEE
T ss_pred ccccccccccccCCCeEEEEcCCCCcEEE--E--ecC--CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc
Confidence 2456667766665322 1 111 11112222222221222221 234445554332
Q ss_pred ---eeeeccCCCCC-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245 143 ---TVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218 (270)
Q Consensus 143 ---~~~~~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~ 218 (270)
.......+... +++.++|. +++ +. . +.|.+||. +++.+..+.. . ..+..++ |.|+
T Consensus 229 ~~~~~~~~~~~~pdgi~~d~~G~-lwv-~~-~-~gv~~~~~-~g~~~~~~~~--------~-----~~~~~~~-f~~d-- 287 (305)
T 3dr2_A 229 DRRHFASVPDGLPDGFCVDRGGW-LWS-SS-G-TGVCVFDS-DGQLLGHIPT--------P-----GTASNCT-FDQA-- 287 (305)
T ss_dssp EEEEEECCSSSCCCSEEECTTSC-EEE-CC-S-SEEEEECT-TSCEEEEEEC--------S-----SCCCEEE-ECTT--
T ss_pred CCeEEEECCCCCCCeEEECCCCC-EEE-ec-C-CcEEEECC-CCCEEEEEEC--------C-----CceeEEE-EeCC--
Confidence 11111112222 89999997 444 23 3 35999998 4777777762 1 1355666 8864
Q ss_pred CCceEEEEecCCC
Q 024245 219 QGFVNVLAGYEDG 231 (270)
Q Consensus 219 ~g~~~l~~~~~dg 231 (270)
++ .|+.++.++
T Consensus 288 -~~-~L~it~~~~ 298 (305)
T 3dr2_A 288 -QQ-RLFITGGPC 298 (305)
T ss_dssp -SC-EEEEEETTE
T ss_pred -CC-EEEEEcCCe
Confidence 44 555555554
No 235
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.54 E-value=1.9e-05 Score=67.38 Aligned_cols=195 Identities=8% Similarity=-0.013 Sum_probs=104.9
Q ss_pred EEEEEeCCCCEEEEecCCC-------------cEEEEeCCCCce--eEEEeecC-CCcceEEEEEeeCCCCCEEEEE-eC
Q 024245 22 TDVCFHQTKPILFAGTTGG-------------ELRIWDTVQHRT--VSSSWVHS-AAHGIVSVATGPSIGLNKVISQ-GR 84 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg-------------~i~vwd~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~-~~ 84 (270)
..++|+ ||+.|+.++.+. .|++|++.++.. ...+.... ....+..+.|+| +|++|+.. +.
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~ 254 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAAN 254 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEES
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEcc
Confidence 578899 999888887774 399999987643 22333221 113478899999 99987533 22
Q ss_pred ---CCcEEEEEccCCccCCCCccceecccc-eEEEEeeccCCccceecCC---CCceEEEeccCce--eeeccCCCCC--
Q 024245 85 ---DGTVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQAN---EPKDCYEREVGET--VDTDSLCDSK-- 153 (270)
Q Consensus 85 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~-- 153 (270)
+..|.++|+.++... ...+..... ....+.............+ .....+++..+.. .. .+..+..
T Consensus 255 ~~~~~~i~~~d~~~~~~~---~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~ 330 (693)
T 3iuj_A 255 STSGNRLYVKDLSQENAP---LLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR-DLIPERQQV 330 (693)
T ss_dssp SSSCCEEEEEETTSTTCC---CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE-EEECCCSSC
T ss_pred CCCCcEEEEEECCCCCCc---eEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE-EEecCCCCE
Confidence 348999999776311 112221111 1111222222211111111 2223345544332 11 1222222
Q ss_pred eEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC--
Q 024245 154 DDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-- 229 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~-- 229 (270)
+.|+++++.+++. ...++ .|++||+.. .....+.. +..+.+..+. ++|+ +..++++.+.
T Consensus 331 ~~~s~~g~~lv~~-~~~~g~~~l~~~d~~g-~~~~~l~~-----------p~~~~~~~~~-~~~d---~~~l~~~~ss~~ 393 (693)
T 3iuj_A 331 LTVHSGSGYLFAE-YMVDATARVEQFDYEG-KRVREVAL-----------PGLGSVSGFN-GKHD---DPALYFGFENYA 393 (693)
T ss_dssp EEEEEETTEEEEE-EEETTEEEEEEECTTS-CEEEEECC-----------SSSSEEEECC-CCTT---CSCEEEEEECSS
T ss_pred EEEEEECCEEEEE-EEECCeeEEEEEECCC-CeeEEeec-----------CCCceEEeee-cCCC---CCEEEEEecCCC
Confidence 6899999887764 33344 689999874 44445542 1223455555 7764 3313333332
Q ss_pred -CCcEEEEEcCC
Q 024245 230 -DGSILVWDIRN 240 (270)
Q Consensus 230 -dg~i~vwd~~~ 240 (270)
-+.|+.||+.+
T Consensus 394 tP~~l~~~d~~~ 405 (693)
T 3iuj_A 394 QPPTLYRFEPKS 405 (693)
T ss_dssp SCCEEEEECTTT
T ss_pred CCCEEEEEECCC
Confidence 27899999876
No 236
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.53 E-value=0.00011 Score=54.21 Aligned_cols=205 Identities=7% Similarity=-0.021 Sum_probs=118.9
Q ss_pred cccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 14 LRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
+.|-...+..++|+|++. ++++...++.|...|.. ++.++.+..... .....|++.+ ++.++++.-.++.+.+++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~--~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIG--DNQFVISDERDYAIYVIS 97 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECS--TTEEEEEETTTTEEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeC--CCEEEEEECCCCcEEEEE
Confidence 445567899999999765 55557778899999988 888877754321 3478899988 877667666778888888
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~ 172 (270)
+....... .. ....... . ....-.+-+.+++.|.+..++++....-.
T Consensus 98 v~~~~~i~----~~-------~~~~~~~---~-------------------~~~~N~g~EGLA~d~~~~~L~va~E~~p~ 144 (255)
T 3qqz_A 98 LTPNSEVK----IL-------KKIKIPL---Q-------------------ESPTNCGFEGLAYSRQDHTFWFFKEKNPI 144 (255)
T ss_dssp ECTTCCEE----EE-------EEEECCC---S-------------------SCCCSSCCEEEEEETTTTEEEEEEESSSE
T ss_pred cCCCCeee----ee-------eeecccc---c-------------------cccccCCcceEEEeCCCCEEEEEECcCCc
Confidence 86543110 00 0000000 0 00000111118899999888875543222
Q ss_pred eEEEEeC-CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245 173 EVEIWDL-NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (270)
Q Consensus 173 ~i~iwd~-~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 251 (270)
.|..|+- .....+..+..+.. .. ........+++ ++|. .++ +++.......|..+|.. ++++..+.-.
T Consensus 145 ~i~~~~g~~~~~~l~i~~~~~~----~~-~~~~~d~S~l~-~dp~--tg~-lliLS~~s~~L~~~d~~--g~~~~~~~L~ 213 (255)
T 3qqz_A 145 EVYKVNGLLSSNELHISKDKAL----QR-QFTLDDVSGAE-FNQQ--KNT-LLVLSHESRALQEVTLV--GEVIGEMSLT 213 (255)
T ss_dssp EEEEEESTTCSSCCEEEECHHH----HH-TCCSSCCCEEE-EETT--TTE-EEEEETTTTEEEEECTT--CCEEEEEECS
T ss_pred eEEEEcccccCCceeeecchhh----cc-ccccCCceeEE-EcCC--CCe-EEEEECCCCeEEEEcCC--CCEEEEEEcC
Confidence 5555551 01111222210000 00 00112345666 8886 566 77777788899999977 4555555432
Q ss_pred C---------CCeeEEEeecCCCc
Q 024245 252 L---------EPGLECSMWRNPIT 266 (270)
Q Consensus 252 ~---------~~v~~~~~s~~g~~ 266 (270)
. .....|+|.++|..
T Consensus 214 ~g~~~l~~~~~qpEGia~d~~G~l 237 (255)
T 3qqz_A 214 KGSRGLSHNIKQAEGVAMDASGNI 237 (255)
T ss_dssp TTGGGCSSCCCSEEEEEECTTCCE
T ss_pred CccCCcccccCCCCeeEECCCCCE
Confidence 1 25689999999864
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.52 E-value=1.1e-05 Score=63.34 Aligned_cols=189 Identities=14% Similarity=0.152 Sum_probs=97.1
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeecCCCc---ceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH---GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 108 (270)
.++.++.++.|..+|..+++.+..+....... ....... .+..++.+..++.|..+|..+++... ....
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~g~~~g~l~~~d~~tG~~~w----~~~~ 216 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVVGGDNGRVSAVLMEQGQMIW----QQRI 216 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEECCTTTEEEEEETTTCCEEE----EEEC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEEEcCCCEEEEEECCCCcEEE----EEec
Confidence 45555566666666666666655554322100 0011111 22567778888999999998886543 1111
Q ss_pred ccc-eE--------EEEeeccCCccce-ecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEe
Q 024245 109 NSY-HF--------CKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (270)
Q Consensus 109 ~~~-~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd 178 (270)
... .. ....+........ ....+....++..+++..-..... .......++..+++. +.++.|..+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~l~~~--~~~g~l~~~d 293 (376)
T 3q7m_A 217 SQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-SVNDFIVDGNRIYLV--DQNDRVMALT 293 (376)
T ss_dssp CC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-CEEEEEEETTEEEEE--ETTCCEEEEE
T ss_pred ccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-CCCCceEECCEEEEE--cCCCeEEEEE
Confidence 100 00 0000000011111 112334455666665544221111 112222345566653 3478999999
Q ss_pred CCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
..+++.+..... .. ........ .. ++ .|+.++.+|.|+++|..+ ++.+.....
T Consensus 294 ~~tG~~~w~~~~--------~~---~~~~~~~~-~~----~~--~l~v~~~~g~l~~~d~~t-G~~~~~~~~ 346 (376)
T 3q7m_A 294 IDGGVTLWTQSD--------LL---HRLLTSPV-LY----NG--NLVVGDSEGYLHWINVED-GRFVAQQKV 346 (376)
T ss_dssp TTTCCEEEEECT--------TT---TSCCCCCE-EE----TT--EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred CCCCcEEEeecc--------cC---CCcccCCE-EE----CC--EEEEEeCCCeEEEEECCC-CcEEEEEec
Confidence 999998776651 10 11111111 21 23 788888999999999998 777777665
No 238
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.52 E-value=1.1e-05 Score=69.37 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=47.0
Q ss_pred cEEEEEEe-CCCCEEEEecC-C----CcEEEEeCCCC-ceeEE-EeecCCCcceEEEEEeeCCCCCEEEEEeCCC-----
Q 024245 20 SVTDVCFH-QTKPILFAGTT-G----GELRIWDTVQH-RTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDG----- 86 (270)
Q Consensus 20 ~v~~~~~s-~~~~~l~s~~~-d----g~i~vwd~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~----- 86 (270)
.+...+|| |||++||-+.. + ..|+++|+.++ +.+.. +. .....+.|+| +++.|+....|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-----~~~~~~~Wsp--Dg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-----GTNGEIVWGP--DHTSLFYVTKDETLREN 247 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-----EECSCCEECS--STTEEEEEEECTTCCEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-----CceeeEEEec--CCCEEEEEEECCCCCCC
Confidence 68889999 99998774332 2 35999999988 63211 11 1134688999 988887666542
Q ss_pred cEEEEEccCC
Q 024245 87 TVKCWDIENG 96 (270)
Q Consensus 87 ~i~~wd~~~~ 96 (270)
.|.++++.++
T Consensus 248 ~v~~~~lgt~ 257 (751)
T 2xe4_A 248 KVWRHVMGKL 257 (751)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEECCCC
Confidence 4666666554
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.51 E-value=2.4e-05 Score=60.02 Aligned_cols=200 Identities=10% Similarity=-0.049 Sum_probs=110.7
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 109 (270)
+..|..++.++.|..+|.. ++....+.... ..+.++...+ ++. |+.++.++.|..+|.. ++... .....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~~~--~g~-l~vgt~~~~l~~~d~~-g~~~~----~~~~~ 175 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKK--AIYATPIVSE--DGT-IYVGSNDNYLYAINPD-GTEKW----RFKTN 175 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECT--TSC-EEEECTTSEEEEECTT-SCEEE----EEECS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC--ceeeeeEEcC--CCE-EEEEcCCCEEEEECCC-CCEeE----EEecC
Confidence 4467778888899999988 77766665444 3356666665 544 6667888899999988 54322 11111
Q ss_pred cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceee
Q 024245 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186 (270)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 186 (270)
.............. ..+.. +....++ .+++........... +...++|. +++ ++.++.|..+|. +++.+.
T Consensus 176 ~~~~~~~~~d~~g~-l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v--~t~~~gl~~~~~-~g~~~~ 248 (330)
T 3hxj_A 176 DAITSAASIGKDGT-IYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV--TSLDGHLYAINP-DGTEKW 248 (330)
T ss_dssp SCCCSCCEECTTCC-EEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE--EETTTEEEEECT-TSCEEE
T ss_pred CCceeeeEEcCCCE-EEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE--EcCCCeEEEECC-CCCEeE
Confidence 11111111111111 11222 3334444 333322221111111 66777775 444 233577888874 566666
Q ss_pred eeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
.+.. . ......+. ..+ ++ .|..++.+|.|..+|. + ++.+..+......+.++...++|.+
T Consensus 249 ~~~~--------~----~~~~~~~~-~~~---~g--~l~v~t~~ggl~~~d~-~-g~~~~~~~~~~~~~~~~~~d~~g~l 308 (330)
T 3hxj_A 249 RFKT--------G----KRIESSPV-IGN---TD--TIYFGSYDGHLYAINP-D-GTEKWNFETGSWIIATPVIDENGTI 308 (330)
T ss_dssp EEEC--------S----SCCCSCCE-ECT---TS--CEEEECTTCEEEEECT-T-SCEEEEEECSSCCCSCCEECTTCCE
T ss_pred EeeC--------C----CCccccce-EcC---CC--eEEEecCCCCEEEECC-C-CcEEEEEEcCCccccceEEcCCCEE
Confidence 5552 1 11122232 432 34 5777888889999995 5 6666666655566777777777765
Q ss_pred e
Q 024245 267 M 267 (270)
Q Consensus 267 l 267 (270)
.
T Consensus 309 ~ 309 (330)
T 3hxj_A 309 Y 309 (330)
T ss_dssp E
T ss_pred E
Confidence 3
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.47 E-value=0.00015 Score=61.44 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=55.4
Q ss_pred EEEEEeCCCCEEEEecCCC-------------------cEEEEeCCCCceeEEEeecCCC-------cceEEEEEeeCCC
Q 024245 22 TDVCFHQTKPILFAGTTGG-------------------ELRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIG 75 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~ 75 (270)
..+++.|+..+++.++.++ .|..+|..+++.+..++...+. .+.....+.. +
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~ 310 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--D 310 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--T
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--C
Confidence 3578888878888887765 3999999999998887653211 2233333334 5
Q ss_pred CC---EEEEEeCCCcEEEEEccCCccC
Q 024245 76 LN---KVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 76 ~~---~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
|+ .++.++.+|.+.++|..+++.+
T Consensus 311 G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 311 GKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 54 6889999999999999999764
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.42 E-value=7e-05 Score=61.47 Aligned_cols=223 Identities=11% Similarity=0.020 Sum_probs=122.5
Q ss_pred ccEEEEEE-e-CCCCEEEEec------------------CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCE
Q 024245 19 ASVTDVCF-H-QTKPILFAGT------------------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK 78 (270)
Q Consensus 19 ~~v~~~~~-s-~~~~~l~s~~------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 78 (270)
.....+++ + |+++++++++ .++.+.+.|..+.+....+..... -..++++| +|++
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~sp--dGk~ 208 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADY--EGKW 208 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECS--SSSE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECC--CCCE
Confidence 45778888 5 8999988884 346799999999888887765431 46778999 8899
Q ss_pred EEEEeCCC---------------c-----------------------EEEEEccC--CccCCCCccceec-ccceEEEEe
Q 024245 79 VISQGRDG---------------T-----------------------VKCWDIEN--GGLSSNPSLTIKT-NSYHFCKLS 117 (270)
Q Consensus 79 l~s~~~d~---------------~-----------------------i~~wd~~~--~~~~~~~~~~~~~-~~~~~~~~~ 117 (270)
+++.+.+. . |.+.|..+ ++. .+..++. ...+...++
T Consensus 209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~---~~~~Ipvg~~PhGv~~s 285 (595)
T 1fwx_A 209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSL---FTRYIPIANNPHGCNMA 285 (595)
T ss_dssp EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCS---SEEEEEEESSCCCEEEC
T ss_pred EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCce---eEEEEecCCCceEEEEc
Confidence 88877553 2 44444443 111 0111111 111222233
Q ss_pred eccCCccceecCCCCceEEEeccCc------------eeeeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCC--
Q 024245 118 LVKEPYANAKQANEPKDCYEREVGE------------TVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNT-- 181 (270)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~-- 181 (270)
.++...............+++.+.+ .......+... ++|+|+| ++++ +...|+.|.+||+.+
T Consensus 286 PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~-t~~ldsqV~kwdi~~a~ 363 (595)
T 1fwx_A 286 PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYT-SLFLDSQVVKWNIEDAI 363 (595)
T ss_dssp TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEE-EETTTTEEEEEEHHHHH
T ss_pred CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEE-EEecCCcEEEEEhhHhh
Confidence 3332222233333445556776442 22222333333 9999999 6665 566799999999976
Q ss_pred --------cceeeeeccCcCCCCCCcccC-CCceeeeeeecCCCCCCCceEEEEecC-C-CcE-----------EEEEcC
Q 024245 182 --------AERCTRLHQNSCGGSPNFSSK-GRGMCMAVQAYLPSKSQGFVNVLAGYE-D-GSI-----------LVWDIR 239 (270)
Q Consensus 182 --------~~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~p~~~~g~~~l~~~~~-d-g~i-----------~vwd~~ 239 (270)
.+.+.++.. |-.+ ......... ++| ||+ +|++... . ..+ .++|+.
T Consensus 364 ~~~~g~~~~~vi~kidV--------~yqpGh~~~~~g~t-~~~---DGk-~l~~~Nk~skdr~~~~gp~~~~~~ql~dis 430 (595)
T 1fwx_A 364 RAYAGEKVDPIKDKLDV--------HYQPGHLKTVMGET-LDA---TND-WLVCLSKFSKDRFLNVGPLKPENDQLIDIS 430 (595)
T ss_dssp HHHHTCSCCCEEEEEEC--------SSCEEEEEETTTTS-TTC---CSS-EEEEEESCCTTSSCCCCSSCCEEEEEEECS
T ss_pred hhhcccccceeEEEeec--------ccccccceeccceE-eCC---CCC-EEEEcCCCCccccccCCCCCCCcceEEEcC
Confidence 345555552 2110 011222333 677 576 5555532 2 233 889995
Q ss_pred CCCcc--eeeeeccCCCeeEEEeecCCCc
Q 024245 240 NPGIP--LTAMKVHLEPGLECSMWRNPIT 266 (270)
Q Consensus 240 ~~~~~--~~~~~~~~~~v~~~~~s~~g~~ 266 (270)
. ++. +..... ......+.+.|..++
T Consensus 431 ~-~~m~lv~d~p~-~~ePh~~~i~~~~~~ 457 (595)
T 1fwx_A 431 G-DKMVLVHDGPT-FAEPHDAIAVHPSIL 457 (595)
T ss_dssp S-SSCEEEEEEEE-SSCCCCEEEECTTTT
T ss_pred C-CcEEEEEEEcC-CCCCCceEEccHHHc
Confidence 4 442 222222 234455666665543
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.37 E-value=3.6e-06 Score=65.73 Aligned_cols=104 Identities=10% Similarity=-0.143 Sum_probs=71.3
Q ss_pred cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEEEEEccCCccCCCCccceecc-
Q 024245 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGGLSSNPSLTIKTN- 109 (270)
Q Consensus 41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~~~- 109 (270)
.|.+.|..+++.+.++.... .+ .+.++| ++++++.+. .++.|.+||+.+++... .+...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~--~P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~----~I~v~~ 116 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF--LS--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA----DIELPD 116 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT--TC--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE----EEEETT
T ss_pred eEEEEECCCCeEEEEEeCCC--CC--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE----EEECCC
Confidence 78899999999999998665 45 799999 999888775 37899999999986543 22211
Q ss_pred cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEE--EeCCCcceeee
Q 024245 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI--WDLNTAERCTR 187 (270)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~i--wd~~~~~~~~~ 187 (270)
..... .......++++|||++++++....+..+.+ +|+.+ +.+
T Consensus 117 ~~~~~--------------------------------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~ 161 (368)
T 1mda_H 117 APRFS--------------------------------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQL 161 (368)
T ss_dssp SCSCC--------------------------------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEE
T ss_pred ccccc--------------------------------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceE
Confidence 00000 000011177999999888754333467888 99987 445
Q ss_pred ec
Q 024245 188 LH 189 (270)
Q Consensus 188 ~~ 189 (270)
+.
T Consensus 162 i~ 163 (368)
T 1mda_H 162 TK 163 (368)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 243
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.36 E-value=4.4e-05 Score=59.90 Aligned_cols=185 Identities=10% Similarity=0.074 Sum_probs=102.1
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 109 (270)
+..++.++.++.|..+|.++++.+..+..... ....... . + ..++.++.++.|..+|..+++... .....
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~~p~~-~--~-~~v~v~~~~g~l~~~d~~tG~~~W----~~~~~ 172 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALSRPVV-S--D-GLVLIHTSNGQLQALNEADGAVKW----TVNLD 172 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCSCCEE-E--T-TEEEEECTTSEEEEEETTTCCEEE----EEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--eEcCCEE-E--C-CEEEEEcCCCeEEEEECCCCcEEE----EEeCC
Confidence 45677788899999999999998877765431 1112222 2 3 578888899999999999887543 11111
Q ss_pred cceE-----EEEeeccCCccceecCCCCceEEEeccCceeeeccCCCC----------CeEecC--CCCeEEEEecCCCc
Q 024245 110 SYHF-----CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS----------KDDVPA--EGPKYMAVAGEQLS 172 (270)
Q Consensus 110 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~s~--~~~~~~~~~~~~d~ 172 (270)
.... ...... ..........+....++..+++..-....... .+...| .+..+++ ++.++
T Consensus 173 ~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~--~~~~g 249 (376)
T 3q7m_A 173 MPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA--LAYNG 249 (376)
T ss_dssp C-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE--ECTTS
T ss_pred CCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE--EecCc
Confidence 0000 000001 01111111122334455555543322111100 000111 2344554 34578
Q ss_pred eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
.+..+|..+++.+..... . ....+. .. ++ .++.++.++.|..+|..+ ++.+....
T Consensus 250 ~l~~~d~~tG~~~w~~~~-------------~-~~~~~~-~~----~~--~l~~~~~~g~l~~~d~~t-G~~~w~~~ 304 (376)
T 3q7m_A 250 NLTALDLRSGQIMWKREL-------------G-SVNDFI-VD----GN--RIYLVDQNDRVMALTIDG-GVTLWTQS 304 (376)
T ss_dssp CEEEEETTTCCEEEEECC-------------C-CEEEEE-EE----TT--EEEEEETTCCEEEEETTT-CCEEEEEC
T ss_pred EEEEEECCCCcEEeeccC-------------C-CCCCce-EE----CC--EEEEEcCCCeEEEEECCC-CcEEEeec
Confidence 999999999998877652 1 112222 22 23 677778899999999998 66665554
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.36 E-value=0.00021 Score=54.80 Aligned_cols=189 Identities=10% Similarity=-0.023 Sum_probs=103.5
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecC------------------CCcceEEEEEeeCCCCCEEE
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS------------------AAHGIVSVATGPSIGLNKVI 80 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~l~ 80 (270)
....+++|.++|++++++..++.|..||..+++.. .+.... ....+..+++.+ ++..|+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--~~g~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--QNNQLY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--TTTEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--CCCcEE
Confidence 45677899999987888888999999998765433 232110 002478899986 445566
Q ss_pred EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecC-C
Q 024245 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA-E 159 (270)
Q Consensus 81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~ 159 (270)
.+...+.|..+|..++... .+....... .+.....+++.+ +
T Consensus 96 v~d~~~~i~~~d~~~g~~~-----~~~~~~~~~---------------------------------~~~~p~~i~~d~~~ 137 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHAT-----QLATSVDGV---------------------------------PFKWLYAVTVDQRT 137 (322)
T ss_dssp EEETTTEEEEECTTCEECE-----EEESEETTE---------------------------------ECSCEEEEEECTTT
T ss_pred EEECCCCEEEEeCCCCEEE-----EecccCCCC---------------------------------cccccceEEEecCC
Confidence 5655555778876654321 110000000 000000045677 7
Q ss_pred CCeEEEEecC----------------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245 160 GPKYMAVAGE----------------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (270)
Q Consensus 160 ~~~~~~~~~~----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~ 223 (270)
|. ++++... .++.|..||..+++....... ......++ |+|+ |+.+
T Consensus 138 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------------~~~p~gia-~~~d---g~~l 199 (322)
T 2fp8_A 138 GI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-------------LHVPGGAE-VSAD---SSFV 199 (322)
T ss_dssp CC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-------------ESCCCEEE-ECTT---SSEE
T ss_pred CE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-------------CccCcceE-ECCC---CCEE
Confidence 75 4433321 247788888876654322220 11234455 8884 5424
Q ss_pred EEEecCCCcEEEEEcCCCC-cceeeeeccCCCeeEEEeecCCCce
Q 024245 224 VLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPGLECSMWRNPITM 267 (270)
Q Consensus 224 l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l 267 (270)
+++-...+.|.+|++.... .....+....+ ...++++++|.+.
T Consensus 200 yv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 200 LVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFW 243 (322)
T ss_dssp EEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEE
T ss_pred EEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEE
Confidence 5555667899999987521 11122211223 7778888887653
No 245
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.35 E-value=5.3e-05 Score=64.33 Aligned_cols=199 Identities=15% Similarity=0.010 Sum_probs=111.0
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCc---------ceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH---------GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 100 (270)
+..|+.++.++.|.-+|..+|+.+..+....... ....+++ .+..|+.++.|+.|..+|..+++...
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 4467777778999999999999988876543110 0122333 23688888999999999999987643
Q ss_pred CCccceecc-c----ceEEEEeeccCCccceecC-------CCCceEEEeccCceeeecc--------------------
Q 024245 101 NPSLTIKTN-S----YHFCKLSLVKEPYANAKQA-------NEPKDCYEREVGETVDTDS-------------------- 148 (270)
Q Consensus 101 ~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-------------------- 148 (270)
..... . .... ..+.......+... .+....+|..+++.+-...
T Consensus 153 ----~~~~~~~~~~~~~~~-~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~ 227 (677)
T 1kb0_A 153 ----HQNTFEGQKGSLTIT-GAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR 227 (677)
T ss_dssp ----EEETTTTCCSSCBCC-SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred ----eecCCcCcCcCcccc-cCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence 22111 0 0000 00000001111111 1233445555554331110
Q ss_pred ------------CCC---CCeEecCCCCeEEEEecCC-------------C----ceEEEEeCCCcceeeeeccCcCCCC
Q 024245 149 ------------LCD---SKDDVPAEGPKYMAVAGEQ-------------L----SEVEIWDLNTAERCTRLHQNSCGGS 196 (270)
Q Consensus 149 ------------~~~---~~~~~s~~~~~~~~~~~~~-------------d----~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (270)
.+. ..+++.|++..+++.++.. | +.|..+|..+|+.+..++..
T Consensus 228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~----- 302 (677)
T 1kb0_A 228 TWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET----- 302 (677)
T ss_dssp TSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-----
T ss_pred cccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC-----
Confidence 000 0167788888777644321 0 25999999999998887731
Q ss_pred CCcccC----CCceeeeeeecCCCCCCCc--eEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 197 PNFSSK----GRGMCMAVQAYLPSKSQGF--VNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 197 ~~h~~~----~~~~~~~~~~~~p~~~~g~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
.|... ....+. +. ... +|+ ..++.++.+|.|+++|.++ ++++..++
T Consensus 303 -~~d~wd~~~~~~p~l-~~-~~~---dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~ 354 (677)
T 1kb0_A 303 -PGDNWDYTSTQPMIL-AD-IKI---AGKPRKVILHAPKNGFFFVLDRTN-GKFISAKN 354 (677)
T ss_dssp -TTCCSCCCCCSCCEE-EE-EEE---TTEEEEEEEECCTTSEEEEEETTT-CCEEEEEE
T ss_pred -CCcccccccCCCcEE-Ee-ccc---CCcEeeEEEEECCCCEEEEEECCC-CCEecccc
Confidence 12110 011111 11 111 341 2899999999999999999 77776654
No 246
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.33 E-value=8.2e-05 Score=54.69 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=89.1
Q ss_pred ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC
Q 024245 51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN 130 (270)
Q Consensus 51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (270)
+.+.++ .|....-...+.|+. + .+.++.+.+|.|+++|+++++.... . +......
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~--~-~Ly~stG~~g~v~~iD~~Tgkv~~~--~-l~~~~Fg------------------ 98 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ--G-HFFESTGHQGTLRQLSLESAQPVWM--E-RLGNIFA------------------ 98 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--T-EEEEEETTTTEEEECCSSCSSCSEE--E-ECTTCCE------------------
T ss_pred EEEEEE-cCCCccccceEEEEC--C-EEEEEcCCCCEEEEEECCCCcEEeE--E-CCCCcce------------------
Confidence 344555 344445568899875 3 6677888899999999999986541 1 1111100
Q ss_pred CCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeee
Q 024245 131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV 210 (270)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 210 (270)
..+.+++..+++++. .++.+.+||..+.+.+.++.. ...-+.+
T Consensus 99 -----------------------eGit~~g~~Ly~ltw-~~~~v~V~D~~Tl~~~~ti~~-------------~~eGwGL 141 (268)
T 3nok_A 99 -----------------------EGLASDGERLYQLTW-TEGLLFTWSGMPPQRERTTRY-------------SGEGWGL 141 (268)
T ss_dssp -----------------------EEEEECSSCEEEEES-SSCEEEEEETTTTEEEEEEEC-------------SSCCCCE
T ss_pred -----------------------eEEEEeCCEEEEEEc-cCCEEEEEECCcCcEEEEEeC-------------CCceeEE
Confidence 012334556666544 589999999999999999983 1122343
Q ss_pred eecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC-----CCeeEEEee
Q 024245 211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----EPGLECSMW 261 (270)
Q Consensus 211 ~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~s 261 (270)
+ + |++ .|+.+..++.|.++|..+ .+.+..+.... ..++.+.|.
T Consensus 142 t-~-----Dg~-~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 142 C-Y-----WNG-KLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp E-E-----ETT-EEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE
T ss_pred e-c-----CCC-EEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe
Confidence 3 3 344 455555688999999998 67666665321 234556665
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.32 E-value=0.00038 Score=57.98 Aligned_cols=77 Identities=12% Similarity=0.053 Sum_probs=51.8
Q ss_pred CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
+|.|..||+.+++.+.+... +. +..+.... -. ++ +++.|+.||.++.||.++ ++.+..++.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~-------~~--~~~~g~~~---ta----gg--lvf~g~~dg~l~A~D~~t-G~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKE-------HL--PLWAGVLA---TA----GN--LVFTGTGDGYFKAFDAKS-GKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEE-------SS--CCCSCCEE---ET----TT--EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred cceEEEEECCCCCEEEEecC-------CC--CCcccceE---eC----CC--EEEEECCCCcEEEEECCC-CCEEEEecC
Confidence 68999999999998877763 11 11111111 11 23 677799999999999999 888888875
Q ss_pred cCCCe-eEEEeecCCCc
Q 024245 251 HLEPG-LECSMWRNPIT 266 (270)
Q Consensus 251 ~~~~v-~~~~~s~~g~~ 266 (270)
..... .-+.|..+|+.
T Consensus 526 ~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 526 GSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SSCCCSCCEEEEETTEE
T ss_pred CCCcccCceEEEECCEE
Confidence 43322 22667777763
No 248
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.30 E-value=0.0007 Score=53.37 Aligned_cols=215 Identities=7% Similarity=-0.047 Sum_probs=114.4
Q ss_pred ccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCC-EEEEEeCCCcEEEEEccCC
Q 024245 19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 19 ~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~ 96 (270)
..+..++|.+. +.++++-...+.|..+++........+.... .....+++.+ .+. +.++-...+.|.+.++...
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~--~~p~glavd~--~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL--ESPGGLAVDW--VHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC--SCCCCEEEET--TTTEEEEEETTTTEEEECBTTSC
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC--CCccEEEEEe--CCCeEEEEcCCCCeEEEEeCCCC
Confidence 45778999974 4455555567889999988655443333222 3356788887 444 4456566778888887654
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceecCCCC-ceEEEeccC-ceeeecc-CC---CCCeEecCCCCeEEEEecCC
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVG-ETVDTDS-LC---DSKDDVPAEGPKYMAVAGEQ 170 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~-~~---~~~~~~s~~~~~~~~~~~~~ 170 (270)
.... .+.........+.+.......+...... ..++.+... ....... .+ ...++++|++..++++- ..
T Consensus 192 ~~~~----l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD-~~ 266 (386)
T 3v65_B 192 HRKV----LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-AK 266 (386)
T ss_dssp SCEE----EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE-TT
T ss_pred ceEE----eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE-CC
Confidence 3211 1111112223333332222222222222 333332211 1111111 11 11199998888887754 44
Q ss_pred CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
.+.|..+|+........+.. . ......++ +. ++. ++++-...+.|..+|..+ ++....+..
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~--------~----~~~P~gia-v~----~~~-ly~td~~~~~V~~~~~~~-G~~~~~i~~ 327 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQ--------G----LPHPFAIT-VF----EDS-LYWTDWHTKSINSANKFT-GKNQEIIRN 327 (386)
T ss_dssp TTEEEEECTTSCSCEEEECS--------S----CSSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCSCEEEEC
T ss_pred CCEEEEEeCCCCeeEEEEEC--------C----CCCceEEE-EE----CCE-EEEeeCCCCeEEEEECCC-CcceEEEcc
Confidence 68899999874332222221 1 12334454 42 344 677777888999999766 565666654
Q ss_pred cCCCeeEEEee
Q 024245 251 HLEPGLECSMW 261 (270)
Q Consensus 251 ~~~~v~~~~~s 261 (270)
....+.+|++.
T Consensus 328 ~~~~p~gi~v~ 338 (386)
T 3v65_B 328 KLHFPMDIHTL 338 (386)
T ss_dssp SCSCCCCEEEE
T ss_pred CCCCCceEEEE
Confidence 44455666654
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.30 E-value=9.5e-05 Score=54.79 Aligned_cols=167 Identities=5% Similarity=-0.122 Sum_probs=100.9
Q ss_pred EEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCC
Q 024245 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP 102 (270)
Q Consensus 23 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 102 (270)
.+++.. +++.++.-.++.+.++|..+.+.+..+..... . ...+++ +++.++.+..++.|.++|..+.+...
T Consensus 70 Gi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~-~---g~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~-- 140 (266)
T 2iwa_A 70 GLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK-D---GWGLAT--DGKILYGSDGTSILYEIDPHTFKLIK-- 140 (266)
T ss_dssp EEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECCSS-S---CCEEEE--CSSSEEEECSSSEEEEECTTTCCEEE--
T ss_pred EEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECCCC-C---eEEEEE--CCCEEEEECCCCeEEEEECCCCcEEE--
Confidence 344442 23445555688999999999999988865411 2 234566 77777777778899999998876433
Q ss_pred ccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCc
Q 024245 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182 (270)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~ 182 (270)
.+........ +... ..+.|. +| .+++. ...++.|.+.|..++
T Consensus 141 --~I~Vg~~~~p-~~~~--------------------------------nele~~-dg-~lyvn-~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 141 --KHNVKYNGHR-VIRL--------------------------------NELEYI-NG-EVWAN-IWQTDCIARISAKDG 182 (266)
T ss_dssp --EEECEETTEE-CCCE--------------------------------EEEEEE-TT-EEEEE-ETTSSEEEEEETTTC
T ss_pred --EEEECCCCcc-cccc--------------------------------eeEEEE-CC-EEEEe-cCCCCeEEEEECCCC
Confidence 2211100000 0000 003344 45 56654 444689999999999
Q ss_pred ceeeeeccCcCCCCC-CcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245 183 ERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (270)
Q Consensus 183 ~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~ 240 (270)
+.+..+....+.... ............++ |+|+ ++.+++++...++|++.++..
T Consensus 183 ~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa-~~~~---~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIA-WDQE---NKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp CEEEEEECHHHHHHHHHTTCTTCCCEEEEE-EETT---TTEEEEEETTCSEEEEEEEEE
T ss_pred cEEEEEECCCcccccccccccccCceEEEE-EcCC---CCEEEEECCCCCeEEEEEEec
Confidence 998888731000000 00001123456777 9985 434899999999999999876
No 250
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.29 E-value=0.00075 Score=53.22 Aligned_cols=219 Identities=5% Similarity=-0.112 Sum_probs=111.0
Q ss_pred EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCC
Q 024245 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~ 100 (270)
.|.+..+.+ +|+.+.. ..|+..++........+... ..+..++|.+ .++.|+ +-...+.|..+++.......
T Consensus 80 ~C~~~~~~~-~l~~~~~-~~I~~i~~~~~~~~~~~~~~---~~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLNNL---ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSSCC-EEEEECB-SCEEEECTTSCCCEEEECSC---SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccccc-eeEeecC-ccceeeccCCCcEEEEecCC---CccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 344444433 4444433 46888888766554444332 4478999997 545554 55567889999987654211
Q ss_pred CCccceecccceEEEEeeccCCccceecCCCCceEEEecc-CceeeeccC-CCCC---eEecCCCCeEEEEecCCCceEE
Q 024245 101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVDTDSL-CDSK---DDVPAEGPKYMAVAGEQLSEVE 175 (270)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~---~~~s~~~~~~~~~~~~~d~~i~ 175 (270)
+ +.........+.+.+.....+........++.+.. +........ +-.. +++.|.+..++++-....+.|.
T Consensus 153 --~--~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~ 228 (386)
T 3v65_B 153 --V--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 228 (386)
T ss_dssp --E--ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred --E--EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence 1 11111111122233222222222222223322221 111111111 1111 8899888777765433237888
Q ss_pred EEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCe
Q 024245 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPG 255 (270)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 255 (270)
.+++.. .....+.. . .......++ ++|+ +++ ++++-...+.|..+|+.. ......+.......
T Consensus 229 r~~~dG-~~~~~~~~-------~----~~~~PnGla-vd~~--~~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P 291 (386)
T 3v65_B 229 ASSMDG-SGRRIIAD-------T----HLFWPNGLT-IDYA--GRR-MYWVDAKHHVIERANLDG-SHRKAVISQGLPHP 291 (386)
T ss_dssp EEETTS-CSCEEEEC-------S----SCSCEEEEE-EEGG--GTE-EEEEETTTTEEEEECTTS-CSCEEEECSSCSSE
T ss_pred EEeCCC-CCcEEEEE-------C----CCCCeeeEE-EeCC--CCE-EEEEECCCCEEEEEeCCC-CeeEEEEECCCCCc
Confidence 888863 33333321 0 122455676 8875 444 666666778899999874 33333333233456
Q ss_pred eEEEeecCCCcee
Q 024245 256 LECSMWRNPITMS 268 (270)
Q Consensus 256 ~~~~~s~~g~~ls 268 (270)
..|++..+..|++
T Consensus 292 ~giav~~~~ly~t 304 (386)
T 3v65_B 292 FAITVFEDSLYWT 304 (386)
T ss_dssp EEEEEETTEEEEE
T ss_pred eEEEEECCEEEEe
Confidence 7777755555544
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.23 E-value=0.0013 Score=54.66 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=49.9
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
.++.|..||+.+++.+.++.. +. ...+.. .... ++ .++.++.||.|+.||.++ ++.+..++
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~-------~~--~~~~~~-----~~t~--gg--~v~~g~~dg~l~a~D~~t-G~~lw~~~ 502 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWE-------KF--AAWGGT-----LYTK--GG--LVWYATLDGYLKALDNKD-GKELWNFK 502 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-------SS--CCCSBC-----EEET--TT--EEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecC-------CC--Ccccee-----EEEC--CC--EEEEEcCCCeEEEEECCC-CCEEEEEe
Confidence 358999999999998888763 11 111111 1111 23 677789999999999999 88888877
Q ss_pred ccCCC-eeEEEeecCCCc
Q 024245 250 VHLEP-GLECSMWRNPIT 266 (270)
Q Consensus 250 ~~~~~-v~~~~~s~~g~~ 266 (270)
..... -.-+.+..+|++
T Consensus 503 ~~~~~~~~p~~~~~~G~~ 520 (571)
T 2ad6_A 503 MPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp CSSCCCSCCEEEEETTEE
T ss_pred CCCCcEeeeEEEEECCEE
Confidence 43221 122445567654
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.23 E-value=0.00022 Score=51.86 Aligned_cols=131 Identities=18% Similarity=0.149 Sum_probs=82.2
Q ss_pred ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceec
Q 024245 51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128 (270)
Q Consensus 51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (270)
+.+.++ .|....-...+.|++ + .+..+.+.+| .|+.+|+.+++... ...+......
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~--~-~LyestG~~g~S~v~~vD~~tgkv~~--~~~l~~~~fg---------------- 67 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR--G-HLYESTGETGRSSVRKVDLETGRILQ--RAEVPPPYFG---------------- 67 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--T-EEEEEECCTTSCEEEEEETTTCCEEE--EEECCTTCCE----------------
T ss_pred EEEEEc-CCCCccccccEEEEC--C-EEEEECCCCCCceEEEEECCCCCEEE--EEeCCCCcce----------------
Confidence 345556 455556788999986 4 5566766654 89999999997644 1111111100
Q ss_pred CCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceee
Q 024245 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM 208 (270)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 208 (270)
..+.+.+..++..+. .++.+.+||..+.+.+.++.. ...-+
T Consensus 68 -------------------------eGi~~~~~~ly~ltw-~~~~v~v~D~~tl~~~~ti~~-------------~~~Gw 108 (243)
T 3mbr_X 68 -------------------------AGIVAWRDRLIQLTW-RNHEGFVYDLATLTPRARFRY-------------PGEGW 108 (243)
T ss_dssp -------------------------EEEEEETTEEEEEES-SSSEEEEEETTTTEEEEEEEC-------------SSCCC
T ss_pred -------------------------eEEEEeCCEEEEEEe-eCCEEEEEECCcCcEEEEEeC-------------CCCce
Confidence 112233456666544 579999999999999999983 11224
Q ss_pred eeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 209 ~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
.++ + ++. .|+.+..++.|.++|..+ .+.+..+..
T Consensus 109 glt-~-----dg~-~L~vSdgs~~l~~iDp~t-~~~~~~I~V 142 (243)
T 3mbr_X 109 ALT-S-----DDS-HLYMSDGTAVIRKLDPDT-LQQVGSIKV 142 (243)
T ss_dssp EEE-E-----CSS-CEEEECSSSEEEEECTTT-CCEEEEEEC
T ss_pred EEe-e-----CCC-EEEEECCCCeEEEEeCCC-CeEEEEEEE
Confidence 443 3 233 344444588999999998 666666653
No 253
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.23 E-value=0.00093 Score=51.89 Aligned_cols=222 Identities=4% Similarity=-0.131 Sum_probs=113.3
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCc
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGG 97 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~ 97 (270)
+..+|.+..+++ +|+.+.. ..|+..++........+... ..+.+++|.+ .++.|+ +-...+.|..+++....
T Consensus 34 d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~~~~---~~~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLNNL---ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEECSC---SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccCc-eeEeecc-cceEEEeCCCCeeEEeecCC---CceEEEEEec--cccEEEEEeccCCceEEEecCCCC
Confidence 344565555543 4444333 45888888765444333332 4478999997 545555 55567889999987654
Q ss_pred cCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccCC-C--CCeEecCCCCeEEEEecCCCc
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSLC-D--SKDDVPAEGPKYMAVAGEQLS 172 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~--~~~~~s~~~~~~~~~~~~~d~ 172 (270)
... ...........+.+++.....+........+ .+............. . ..+++.|.+..++.+-....+
T Consensus 107 ~~~----~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 107 VEE----VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp CEE----EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred ceE----EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence 211 1111111112233333222222222222222 333222111111111 1 118999977777764433227
Q ss_pred eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (270)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 252 (270)
.|..+++. +.....+.. . .......++ ++|. +++ +.++-...+.|..+|+.. ......+....
T Consensus 183 ~I~r~~~d-G~~~~~~~~--------~---~~~~PnGla-~d~~--~~~-lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~ 245 (349)
T 3v64_C 183 RIEASSMD-GSGRRIIAD--------T---HLFWPNGLT-IDYA--GRR-MYWVDAKHHVIERANLDG-SHRKAVISQGL 245 (349)
T ss_dssp EEEEEETT-SCSCEESCC--------S---SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CSCEEEECSSC
T ss_pred EEEEEeCC-CCCcEEEEE--------C---CCCCcceEE-EeCC--CCE-EEEEECCCCEEEEEeCCC-CceEEEEeCCC
Confidence 88888876 333333321 0 122456676 8875 444 566666778899999874 33222333333
Q ss_pred CCeeEEEeecCCCcee
Q 024245 253 EPGLECSMWRNPITMS 268 (270)
Q Consensus 253 ~~v~~~~~s~~g~~ls 268 (270)
.....|++..+..|++
T Consensus 246 ~~P~giav~~~~ly~t 261 (349)
T 3v64_C 246 PHPFAITVFEDSLYWT 261 (349)
T ss_dssp SSEEEEEEETTEEEEE
T ss_pred CCceEEEEECCEEEEe
Confidence 4567777755544444
No 254
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.23 E-value=2.3e-05 Score=60.12 Aligned_cols=203 Identities=8% Similarity=-0.011 Sum_probs=104.2
Q ss_pred EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 101 (270)
.+.....++ .|..++.++.|..|| .+++....+.... ..+.++...+ ++ .|..++.+ |..+|. +++...
T Consensus 23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~--~g-~l~v~t~~--l~~~d~-~g~~~~- 91 (330)
T 3hxj_A 23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGE--IIECRPSIGK--DG-TIYFGSDK--VYAINP-DGTEKW- 91 (330)
T ss_dssp CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGG--EEEECCEETT--TT-EECCSSCE--EEEECC-CGGGGG-
T ss_pred cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCC--CcccceEEec--CC-cEEEecCc--EEEECC-CCcEEE-
Confidence 334444555 566777888899999 8887766554433 3356666665 54 45555544 888886 444322
Q ss_pred CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceEEEEe
Q 024245 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWD 178 (270)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd 178 (270)
........... .... ..........+....++.. ++........... +...+++. +++ ++.++.|..+|
T Consensus 92 -~~~~~~~~~~~--~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v--gt~~~~l~~~d 163 (330)
T 3hxj_A 92 -RFDTKKAIVSD--FTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYV--GSNDNYLYAIN 163 (330)
T ss_dssp -GSCC-----CC--EEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEE--ECTTSEEEEEC
T ss_pred -EEECCCCcccC--ceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEE--EcCCCEEEEEC
Confidence 11111111111 1111 1111111112223334444 3322111111111 55666775 443 44568999999
Q ss_pred CCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEE
Q 024245 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC 258 (270)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 258 (270)
.. ++.+..+.. . ...+.++. ..+ ++. |..++ +.|..+| .+ ++....+......+.++
T Consensus 164 ~~-g~~~~~~~~--------~----~~~~~~~~-~d~---~g~--l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~~~~ 220 (330)
T 3hxj_A 164 PD-GTEKWRFKT--------N----DAITSAAS-IGK---DGT--IYFGS--DKVYAIN-PD-GTEKWNFYAGYWTVTRP 220 (330)
T ss_dssp TT-SCEEEEEEC--------S----SCCCSCCE-ECT---TCC--EEEES--SSEEEEC-TT-SCEEEEECCSSCCCSCC
T ss_pred CC-CCEeEEEec--------C----CCceeeeE-EcC---CCE--EEEEe--CEEEEEC-CC-CcEEEEEccCCcceece
Confidence 98 777666652 1 11233333 433 454 44444 7889999 55 56565555545567777
Q ss_pred EeecCCCc
Q 024245 259 SMWRNPIT 266 (270)
Q Consensus 259 ~~s~~g~~ 266 (270)
...++|.+
T Consensus 221 ~~~~~g~l 228 (330)
T 3hxj_A 221 AISEDGTI 228 (330)
T ss_dssp EECTTSCE
T ss_pred EECCCCeE
Confidence 77777654
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.17 E-value=0.0019 Score=53.98 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=50.5
Q ss_pred CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
.+|.|..||+.+++.+.+... +. +..+..... .+. +++.++.||.++.||.++ ++.+..++
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-------~~--~~~~g~~~t--------agg-~vf~gt~dg~l~A~D~~t-G~~lW~~~ 511 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-------RF--AVWGGTMAT--------AGD-LVFYGTLDGYLKARDSDT-GDLLWKFK 511 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-------SS--CCCSBCEEE--------TTT-EEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred CcCeEEEEECCCCCEEeEecC-------CC--CccCcceEe--------cCC-EEEEECCCCeEEEEECCC-CCEEEEee
Confidence 358999999999998887763 11 111111111 122 677799999999999999 88888876
Q ss_pred ccCCCe-eEEEeecCCCc
Q 024245 250 VHLEPG-LECSMWRNPIT 266 (270)
Q Consensus 250 ~~~~~v-~~~~~s~~g~~ 266 (270)
.....+ .-+.+..+|+.
T Consensus 512 l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 512 IPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CSSCCCSCCEEEEETTEE
T ss_pred CCCCcEeccEEEEeCCEE
Confidence 433221 23556667753
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.17 E-value=0.00022 Score=52.43 Aligned_cols=144 Identities=14% Similarity=0.096 Sum_probs=87.7
Q ss_pred eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC
Q 024245 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129 (270)
Q Consensus 52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (270)
.++++. |....-...+.|+. + .+..+.+.+| .|+++|+.+++... ........+.
T Consensus 33 vv~~~p-hd~~~ftqGL~~~~--~-~LyestG~~g~S~v~~vD~~Tgkv~~----~~~l~~~~Fg--------------- 89 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYRN--G-YFYESTGLNGRSSIRKVDIESGKTLQ----QIELGKRYFG--------------- 89 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEET--T-EEEEEEEETTEEEEEEECTTTCCEEE----EEECCTTCCE---------------
T ss_pred EEEEec-CCCCcccceEEEEC--C-EEEEECCCCCCceEEEEECCCCcEEE----EEecCCccce---------------
Confidence 455563 44435568888874 3 6666777766 89999999997644 2211110000
Q ss_pred CCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeee
Q 024245 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA 209 (270)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 209 (270)
..+.+++..+++++. .++.+.+||..+.+.+.++.. ...-+.
T Consensus 90 ------------------------eGit~~g~~ly~ltw-~~~~v~v~D~~t~~~~~ti~~-------------~~eG~g 131 (262)
T 3nol_A 90 ------------------------EGISDWKDKIVGLTW-KNGLGFVWNIRNLRQVRSFNY-------------DGEGWG 131 (262)
T ss_dssp ------------------------EEEEEETTEEEEEES-SSSEEEEEETTTCCEEEEEEC-------------SSCCCC
T ss_pred ------------------------eEEEEeCCEEEEEEe-eCCEEEEEECccCcEEEEEEC-------------CCCceE
Confidence 113344567776544 579999999999999999983 112233
Q ss_pred eeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC-----CCeeEEEeecCCC
Q 024245 210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----EPGLECSMWRNPI 265 (270)
Q Consensus 210 ~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~s~~g~ 265 (270)
++ + |++ .|+....++.|.++|..+ .+.+..+.... ..++.+.|. +|+
T Consensus 132 lt-~-----dg~-~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 132 LT-H-----NDQ-YLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EE-E-----CSS-CEEECCSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred Ee-c-----CCC-EEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEEE-CCE
Confidence 33 3 344 444444578899999998 66666655321 234456665 443
No 257
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.08 E-value=1.6e-06 Score=68.12 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=65.9
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcccee--cCCCCceEEEeccCceeeeccCCCC
Q 024245 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK--QANEPKDCYEREVGETVDTDSLCDS 152 (270)
Q Consensus 75 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (270)
++..+++++.|+.|..||..+++... ............. . ...... ...+....||..+++.+... ..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W----~~~~~~~~s~p~~--~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~ 79 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW----TLKEDPVLQVPTH--V-EEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFTI 79 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE----EEECCCSCCCC--------CCEEECTTTCCEEEC-----CCSEEC-SCCH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE----EecCCCceecceE--c-CCCEEEEeCCCCEEEEEECCCCceeeee-eccC
Confidence 45889999999999999999997654 2222111100000 0 111111 23444555676665543211 1111
Q ss_pred C--eEecC---CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245 153 K--DDVPA---EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 153 ~--~~~s~---~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
. +..+| .+..++ +++.|+.|+.||..+|+.+.++.. +. ... ++|. +. .++++
T Consensus 80 ~~~~~~sp~~~~~~~v~--~g~~dg~v~a~D~~tG~~~w~~~~--------~~--------~~~-~~p~---~~-~v~~~ 136 (369)
T 2hz6_A 80 PELVQASPCRSSDGILY--MGKKQDIWYVIDLLTGEKQQTLSS--------AF--------ADS-LSPS---TS-LLYLG 136 (369)
T ss_dssp HHHHTTCSCC-----CC--CCEEEEEEEEECCC-------------------------------------------EEEE
T ss_pred ccccccCceEecCCEEE--EEeCCCEEEEEECCCCcEEEEecC--------CC--------ccc-cccc---CC-EEEEE
Confidence 1 11111 233333 466689999999999999888772 21 122 5563 33 78888
Q ss_pred cCCCcEEEEEcCCCCcceeeee
Q 024245 228 YEDGSILVWDIRNPGIPLTAMK 249 (270)
Q Consensus 228 ~~dg~i~vwd~~~~~~~~~~~~ 249 (270)
+.|+.|+.||.++ ++.+..+.
T Consensus 137 ~~dg~v~a~d~~t-G~~~W~~~ 157 (369)
T 2hz6_A 137 RTEYTITMYDTKT-RELRWNAT 157 (369)
T ss_dssp EEEEEEECCCSSS-SSCCCEEE
T ss_pred ecCCEEEEEECCC-CCEEEeEe
Confidence 9999999999998 66665554
No 258
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.06 E-value=0.0002 Score=60.95 Aligned_cols=151 Identities=9% Similarity=0.021 Sum_probs=76.4
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeecCC--------------------------C-----------cceEEEEEeeCC
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSA--------------------------A-----------HGIVSVATGPSI 74 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------------------------~-----------~~v~~~~~~~~~ 74 (270)
.++.++.+|.++++|..+|+.+........ . ..-..++++|
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-- 398 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-- 398 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET--
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC--
Confidence 788999999999999999988754322110 0 0011367888
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCC-ccc-eec--CCCCceEEEeccCceeeeccCC
Q 024245 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YAN-AKQ--ANEPKDCYEREVGETVDTDSLC 150 (270)
Q Consensus 75 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 150 (270)
+..++++...+....++................. ... +...... ... ... ..+....||+.+++.+-....+
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~---~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~ 474 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQL-GLR---TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV 474 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCC-SSE---ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES
T ss_pred CCCEEEEeccccceeeeecccccccccccccccc-Ccc---ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC
Confidence 7778887776665555544331000000000000 000 0000000 000 000 0122334555555432211111
Q ss_pred CCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245 151 DSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (270)
Q Consensus 151 ~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 190 (270)
... ..++..+..++ .++.|+.++.||.++|+.+.++..
T Consensus 475 ~~~~~g~~~tagglvf--~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVF--EGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp SSCCCCEEEETTTEEE--EECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCccCccceECCCEEE--EECCCCcEEEEECCCCccceeeeC
Confidence 111 34555665444 356799999999999999998874
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.02 E-value=0.0026 Score=49.37 Aligned_cols=216 Identities=7% Similarity=-0.055 Sum_probs=114.1
Q ss_pred ccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 19 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
..+..++|++.+. ++++-...+.|..+++........+.... .....+++.+. ++++.++-...+.|.+.++....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~--~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~ 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL--ESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAH 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCS
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC--CCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCc
Confidence 3467899997544 45555567889999987655443333222 33578888872 33444566667889999987543
Q ss_pred cCCCCccceecccceEEEEeeccCCccceecCCCC-ceEEEeccC-ceeeeccC-CC---CCeEecCCCCeEEEEecCCC
Q 024245 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVG-ETVDTDSL-CD---SKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~-~~---~~~~~s~~~~~~~~~~~~~d 171 (270)
... ...........+.+.......+...... ..++.+... ........ +- ..++++|++..++++- ...
T Consensus 150 ~~~----l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD-~~~ 224 (349)
T 3v64_C 150 RKV----LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-AKH 224 (349)
T ss_dssp CEE----EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE-TTT
T ss_pred eEE----EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE-CCC
Confidence 211 1111112223333332222222222222 333333211 11111111 11 1199999888887754 346
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 251 (270)
+.|..+|+........+.. . ......++ +. ++. ++++-...+.|..+|..+ ++....+...
T Consensus 225 ~~I~~~~~dG~~~~~~~~~--------~----~~~P~gia-v~----~~~-ly~td~~~~~V~~~~~~~-G~~~~~i~~~ 285 (349)
T 3v64_C 225 HVIERANLDGSHRKAVISQ--------G----LPHPFAIT-VF----EDS-LYWTDWHTKSINSANKFT-GKNQEIIRNK 285 (349)
T ss_dssp TEEEEEETTSCSCEEEECS--------S----CSSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCSCEEEECS
T ss_pred CEEEEEeCCCCceEEEEeC--------C----CCCceEEE-EE----CCE-EEEecCCCCeEEEEEccC-CCccEEeccC
Confidence 8899999874332222221 1 12334454 42 344 667777788899988666 5555555543
Q ss_pred CCCeeEEEee
Q 024245 252 LEPGLECSMW 261 (270)
Q Consensus 252 ~~~v~~~~~s 261 (270)
...+.+|++.
T Consensus 286 ~~~p~gi~v~ 295 (349)
T 3v64_C 286 LHFPMDIHTL 295 (349)
T ss_dssp CSCCCCEEEE
T ss_pred CCCCceEEEE
Confidence 4445566553
No 260
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.98 E-value=0.0024 Score=47.42 Aligned_cols=204 Identities=7% Similarity=-0.058 Sum_probs=103.0
Q ss_pred CEEEEecCCCcEEEEeCCCCcee-----EEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCCCCcc
Q 024245 31 PILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSL 104 (270)
Q Consensus 31 ~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~ 104 (270)
++|+.+.. +.|+.+++...... ..+.... ..+..++|++ +++.|+ +-..++.|..+++.......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~--~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~---- 72 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPA--KVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTT---- 72 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEE--EEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEE----
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCC--CcEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEE----
Confidence 34555443 47888888754321 1222222 3478999998 655555 55567899999987654211
Q ss_pred ceecccceEEEEeeccCCccceecCCC--CceEEEeccCceeeeccCC-CCC--eEecCCCCeEEEEecCC-CceEEEEe
Q 024245 105 TIKTNSYHFCKLSLVKEPYANAKQANE--PKDCYEREVGETVDTDSLC-DSK--DDVPAEGPKYMAVAGEQ-LSEVEIWD 178 (270)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~~~~~~~~~~-d~~i~iwd 178 (270)
...........+.+.......+..... .+..++............+ ... ++++|++.+++++.... .+.|..++
T Consensus 73 ~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 73 IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred EEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 111111122333333322222222222 2233343322111111111 111 89999777777644321 46888888
Q ss_pred CCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEE
Q 024245 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC 258 (270)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 258 (270)
+. +.....+.. . .......++ ++|+ .+. ++++-...+.|.++|... ......+.+ ......+
T Consensus 153 ~d-g~~~~~~~~-------~----~~~~P~gia-~d~~--~~~-lyv~d~~~~~I~~~~~~g-~~~~~~~~~-~~~P~gi 214 (267)
T 1npe_A 153 MD-GTNRRILAQ-------D----NLGLPNGLT-FDAF--SSQ-LCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYPFAV 214 (267)
T ss_dssp TT-SCCCEEEEC-------T----TCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTE-EEEEEEEEC-CCSEEEE
T ss_pred cC-CCCcEEEEE-------C----CCCCCcEEE-EcCC--CCE-EEEEECCCCEEEEEecCC-CceEEEecC-CCCceEE
Confidence 76 333333321 0 112455666 8874 233 666777778999999875 333333332 2334566
Q ss_pred Eee
Q 024245 259 SMW 261 (270)
Q Consensus 259 ~~s 261 (270)
+..
T Consensus 215 ~~d 217 (267)
T 1npe_A 215 TSY 217 (267)
T ss_dssp EEE
T ss_pred EEe
Confidence 655
No 261
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.95 E-value=0.00039 Score=59.23 Aligned_cols=218 Identities=7% Similarity=-0.071 Sum_probs=106.8
Q ss_pred cEEEEEEeCCCCEEEEe-cCCCcEEEEeCCC----CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245 20 SVTDVCFHQTKPILFAG-TTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 94 (270)
.+.+++|.+.+..|+.+ ...+.|+.+++.. ......+.... .....|++.+. .++++++-...+.|.++++.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~--~~P~glavD~~-~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC----CCCEECCCS-SSBCEECCTTTSCEEEEBSS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC--CCcceEEEEee-CCcEEEEeccCCeEEEEecC
Confidence 45678999865555444 4567899998875 22222221111 22567788752 33455555567889999887
Q ss_pred CCccCCCCccceecccceEEEEeeccCCccceecCCCC-ceEEE--eccCc--eee-eccCCCCCeEecCCCCeEEEEec
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYE--REVGE--TVD-TDSLCDSKDDVPAEGPKYMAVAG 168 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~--~~~-~~~~~~~~~~~s~~~~~~~~~~~ 168 (270)
...... + +.........+.+.......+....+. ..++. +.... .+. ..+.....++|+|++.+|+++-.
T Consensus 484 g~~~~~--l--~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 484 GVKRKT--L--FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp SCCEEE--E--CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred CCceEE--E--EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 553211 1 111111111222222111112222111 22222 21111 111 11222222999998877877544
Q ss_pred CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (270)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 248 (270)
..+.|..+|+.... ...+.. .. ........++ +.. +. ++++....+.|..+|..+ ++.+..+
T Consensus 560 -~~~~I~~~d~dG~~-~~~~~~-------~~--~~~~~P~gla-vd~----~~-lywtd~~~~~V~~~d~~~-G~~~~~i 621 (699)
T 1n7d_A 560 -KLHSISSIDVNGGN-RKTILE-------DE--KRLAHPFSLA-VFE----DK-VFWTDIINEAIFSANRLT-GSDVNLL 621 (699)
T ss_dssp -TTTEEEEECSSSSC-CEEECC-------CS--SSCSSCCCCE-EET----TE-EEEECSTTTCEEEEETTT-EEEEECC
T ss_pred -CCCeEEEEccCCCc-eEEEEe-------cC--CcCCCceEeE-EEC----CE-EEEEeCCCCeEEEEEccC-CCceEEe
Confidence 46889999987433 333321 00 0111223333 321 23 677777788999999877 6655555
Q ss_pred eccCCCeeEEEeec
Q 024245 249 KVHLEPGLECSMWR 262 (270)
Q Consensus 249 ~~~~~~v~~~~~s~ 262 (270)
......++.|++.+
T Consensus 622 ~~~~~~P~~i~v~~ 635 (699)
T 1n7d_A 622 AENLLSPEDMVLFH 635 (699)
T ss_dssp CTTCSSCCCCCBCS
T ss_pred ecCCCCCcEEEEeC
Confidence 43333455555443
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.86 E-value=0.0059 Score=51.00 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=47.6
Q ss_pred CCEEEEecC-CCcEEEEeC-CCCceeEEEeecCCCc---------ceEEEEEeeCCCCCE----EEEEeCCCcEEEEEcc
Q 024245 30 KPILFAGTT-GGELRIWDT-VQHRTVSSSWVHSAAH---------GIVSVATGPSIGLNK----VISQGRDGTVKCWDIE 94 (270)
Q Consensus 30 ~~~l~s~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~----l~s~~~d~~i~~wd~~ 94 (270)
+..|+.++. ++.|.-+|. .+|+.+..+....... ....+++.| .+.. |+.++.|+.|.-+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p--~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP--GDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC--CCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe--cCCcceeEEEEEcCCCEEEEEECC
Confidence 346666776 889999999 8999888776432110 012345544 3344 8888899999999999
Q ss_pred CCccCC
Q 024245 95 NGGLSS 100 (270)
Q Consensus 95 ~~~~~~ 100 (270)
+++...
T Consensus 140 TG~~~W 145 (599)
T 1w6s_A 140 TGETVW 145 (599)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 987643
No 263
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.84 E-value=0.012 Score=50.88 Aligned_cols=216 Identities=9% Similarity=-0.061 Sum_probs=111.4
Q ss_pred cccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCC-CEEEEEeCCCcEEEE
Q 024245 18 RASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCW 91 (270)
Q Consensus 18 ~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d~~i~~w 91 (270)
...+.+|+|.+. +.++++-...+.|+.+++... .....+.... .....|++.+ .+ ++.++-...+.|.+.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l--~~P~GLAvD~--~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC--CCcceeeeee--cCCcEEEEecCCCeEEEE
Confidence 456788999984 445555556678988888753 2222332222 3467899987 55 445566677899999
Q ss_pred EccCCccCCCCccceecccceEEEEeeccCCccceecC-CCCceEE--EeccCceeeeccC-C--CCC-eEecCCCCeEE
Q 024245 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCY--EREVGETVDTDSL-C--DSK-DDVPAEGPKYM 164 (270)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~-~--~~~-~~~s~~~~~~~ 164 (270)
++....... .+.........+.+.......+... +....++ ++..... ..... . ... +++.+.+..|+
T Consensus 499 ~ldG~~~~~----l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 499 DTKGVKRKT----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp ETTSSSEEE----EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEE
T ss_pred eCCCCeEEE----EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCCeEE
Confidence 987543211 1111112233344443322222222 2112333 3222211 11111 1 111 89998887887
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
++-. ..+.|..+++........+. +.. .......++ +. .++ ++++-...+.|...|..+ ++.
T Consensus 574 waD~-~~~~I~~~d~dG~~~~~v~~--------~~~--~l~~P~gla-v~----~~~-lYwtD~~~~~I~~~dk~t-G~~ 635 (791)
T 3m0c_C 574 WVDS-KLHSISSIDVNGGNRKTILE--------DEK--RLAHPFSLA-VF----EDK-VFWTDIINEAIFSANRLT-GSD 635 (791)
T ss_dssp EEET-TTTEEEEEETTSCSCEEEEE--------CTT--TTSSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCC
T ss_pred EEeC-CCCcEEEEecCCCceEEEec--------CCC--ccCCCCEEE-Ee----CCE-EEEEECCCCEEEEEeCCC-Ccc
Confidence 7543 46789999986433332222 110 111233444 32 233 667777778899998877 555
Q ss_pred eeeeeccCCCeeEEEe
Q 024245 245 LTAMKVHLEPGLECSM 260 (270)
Q Consensus 245 ~~~~~~~~~~v~~~~~ 260 (270)
+..+.........|++
T Consensus 636 ~~~l~~~l~~P~~i~v 651 (791)
T 3m0c_C 636 VNLLAENLLSPEDMVL 651 (791)
T ss_dssp CEEEECSCSCCCCEEE
T ss_pred eEEeecCCCCceeEee
Confidence 5555433334445544
No 264
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=0.0032 Score=50.41 Aligned_cols=158 Identities=12% Similarity=0.076 Sum_probs=89.0
Q ss_pred cEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC---cEEEEEcc
Q 024245 20 SVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG---TVKCWDIE 94 (270)
Q Consensus 20 ~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~---~i~~wd~~ 94 (270)
....|+++| ++..|+.+...+.|+.+|+..+....... .. .....|+|++ ++++|+.+.. ++ ...+|-..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~--~~P~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GL--SKVRTICWTH--EADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CC--SCEEEEEECT--TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CC--CCcceEEEeC--CCCEEEEEeCCCCcccceEEEEeC
Confidence 457899998 45556665555789999988765444333 32 4578999999 8886665543 22 12222222
Q ss_pred CCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceE
Q 024245 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i 174 (270)
.+.... . ..+. .+.....++++|++.+++++ -..++.|
T Consensus 213 ~g~~~~--~----------~~l~-----------------------------~~~~p~giavdp~~g~lyv~-d~~~~~V 250 (430)
T 3tc9_A 213 ESGFKV--I----------TELT-----------------------------KGQNCNGAETHPINGELYFN-SWNAGQV 250 (430)
T ss_dssp GGTSCS--E----------EEEE-----------------------------ECSSCCCEEECTTTCCEEEE-ETTTTEE
T ss_pred CCceee--e----------eeec-----------------------------cCCCceEEEEeCCCCEEEEE-ECCCCEE
Confidence 222110 0 0000 01111116788944456553 3346889
Q ss_pred EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
..++...+........ + .......++ |+|+ |+.++++-...+.|..++..
T Consensus 251 ~~~~~~~~~~~~~~~~-------~----~~~~P~gia-~~pd---G~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 251 FRYDFTTQETTPLFTI-------Q----DSGWEFHIQ-FHPS---GNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEETTTTEEEEEEEC-------S----SSSCCEEEE-ECTT---SSEEEEEETTTTEEEEEEEE
T ss_pred EEEECCCCcEEEEEEc-------C----CCCcceeEE-EcCC---CCEEEEEECCCCEEEEEeCC
Confidence 9999986654222221 0 112345566 9984 55355666677889998866
No 265
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.79 E-value=0.0026 Score=53.96 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=47.3
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCc--------ce-EEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH--------GI-VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 100 (270)
+..|+.++.++.|.-+|..+|+.+..+....... .+ ..+.+. +..++.++.|+.|..+|..+++...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW----GDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE----BTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE----CCEEEEEcCCCEEEEEECCCCCEee
Confidence 4467777788999999999999988875432110 00 122332 3678888899999999999997643
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.77 E-value=0.002 Score=54.62 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=50.0
Q ss_pred EEEEEeCCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CC-----CcEEEEEcc
Q 024245 22 TDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RD-----GTVKCWDIE 94 (270)
Q Consensus 22 ~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-----~~i~~wd~~ 94 (270)
.++++..++++++.|+. +..+.+||..+++....-..... ..-.+++..+ +++.++.|+ .+ ..+.+||..
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcc-ccccceEEec--CCeEEEEeCcccCCcccccceEeCCC
Confidence 34677789999999884 45899999988765543222221 1123455666 778888887 34 478999998
Q ss_pred CCcc
Q 024245 95 NGGL 98 (270)
Q Consensus 95 ~~~~ 98 (270)
+++.
T Consensus 323 t~~W 326 (656)
T 1k3i_A 323 SKTW 326 (656)
T ss_dssp TTEE
T ss_pred CCcc
Confidence 7754
No 267
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.77 E-value=0.0071 Score=46.27 Aligned_cols=215 Identities=9% Similarity=-0.012 Sum_probs=110.2
Q ss_pred ccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCcee-EEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 19 ~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
..+.+++|.+. +.++.+-...+.|..+++..+... ..+.... .....+++.+. ++++.++-...+.|.++++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l--~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDWL-GEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC--SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC--CCccEEEEEcC-CCeEEEEECCCCEEEEEECCCC
Confidence 35678899984 555566566788999998765322 2222222 33678888862 3344556666788999998754
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEecc-Cceeeec----cCCCCCeEecCCCCeEEEEecCC
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREV-GETVDTD----SLCDSKDDVPAEGPKYMAVAGEQ 170 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~ 170 (270)
.... + ..........+.+.......+... +....++.+.. +...... +.....+++++++..++++- ..
T Consensus 112 ~~~~--l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD-~~ 186 (318)
T 3sov_A 112 LRKV--L--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD-AK 186 (318)
T ss_dssp SCEE--E--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE-TT
T ss_pred cEEE--E--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEE-CC
Confidence 3211 1 111111222233332211112222 11233333221 1111111 11111199999888887744 45
Q ss_pred CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 250 (270)
.+.|..+|+.. .....+.. +. ......++ +. .+. ++++-...+.|..+|..+ ++....+..
T Consensus 187 ~~~I~~~d~dG-~~~~~~~~-------~~----~~~P~gla-v~----~~~-lywtd~~~~~V~~~~~~~-G~~~~~i~~ 247 (318)
T 3sov_A 187 LNFIHKSNLDG-TNRQAVVK-------GS----LPHPFALT-LF----EDI-LYWTDWSTHSILACNKYT-GEGLREIHS 247 (318)
T ss_dssp TTEEEEEETTS-CSCEEEEC-------SC----CSCEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCSCEEEEC
T ss_pred CCEEEEEcCCC-CceEEEec-------CC----CCCceEEE-Ee----CCE-EEEEecCCCeEEEEECCC-CCceEEEeC
Confidence 68999999873 33333321 11 12234444 42 233 667777788899999877 554444443
Q ss_pred cCCCeeEEEe
Q 024245 251 HLEPGLECSM 260 (270)
Q Consensus 251 ~~~~v~~~~~ 260 (270)
....+.+|+.
T Consensus 248 ~~~~P~~i~v 257 (318)
T 3sov_A 248 DIFSPMDIHA 257 (318)
T ss_dssp CCSSCCCEEE
T ss_pred CCCCCcEEEE
Confidence 2233444443
No 268
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.75 E-value=0.01 Score=49.30 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=45.8
Q ss_pred CCEEEEecC-CCcEEEEeC-CCCceeEEEeecCCCc--------c-eEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245 30 KPILFAGTT-GGELRIWDT-VQHRTVSSSWVHSAAH--------G-IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (270)
Q Consensus 30 ~~~l~s~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~--------~-v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 98 (270)
+..++.++. ++.|.-+|. .+++.+..+....... . ...+++ .+..++.++.|+.|..+|..+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCE
Confidence 345666666 889999999 8999888775432100 0 012233 236788888899999999999876
Q ss_pred CC
Q 024245 99 SS 100 (270)
Q Consensus 99 ~~ 100 (270)
..
T Consensus 138 ~W 139 (571)
T 2ad6_A 138 NW 139 (571)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.74 E-value=0.01 Score=47.05 Aligned_cols=219 Identities=7% Similarity=-0.083 Sum_probs=112.6
Q ss_pred cccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 18 ~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
...+..|+|++.+. ++++-...+.|+.+++... .....+.... .....+++.+. .+++.++-...+.|.+.+
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~p~glavD~~-~~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDWI-HSNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC--SCEEEEEEETT-TTEEEEEETTTTEEEEEC
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC--CCcccEEEEec-CCceEEEECCCCeEEEEe
Confidence 45678999998544 4455455678988988652 2222222222 44788998872 334445656678899888
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecC-C--CCceEEEeccCceeeeccC--CCCC-eEecCCCCeEEEE
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-N--EPKDCYEREVGETVDTDSL--CDSK-DDVPAEGPKYMAV 166 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~--~~~~-~~~s~~~~~~~~~ 166 (270)
++...... .+.........+.+.......+... + ..+...++........... .... +++++++..++++
T Consensus 188 ~~g~~~~~----l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 188 TKGVKRKT----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp TTTCSEEE----EEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCCCceEE----EEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence 87553211 1111111222333333222222222 1 1222223322111111111 1111 9999988888775
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
- ...+.|..+|+.... ...+.. ... .......++ .. .+. ++++-...+.|..+|..+ ++.+.
T Consensus 264 D-~~~~~I~~~d~dG~~-~~~~~~-------~~~--~l~~P~gl~-v~----~~~-lywtd~~~~~V~~~~~~~-G~~~~ 325 (400)
T 3p5b_L 264 D-SKLHSISSIDVNGGN-RKTILE-------DEK--RLAHPFSLA-VF----EDK-VFWTDIINEAIFSANRLT-GSDVN 325 (400)
T ss_dssp E-TTTTEEEEEETTSCC-CEEEEE-------CSS--TTSSEEEEE-EE----TTE-EEEEESSSCSEEEEESSS-CCCCE
T ss_pred E-CCCCEEEEEeCCCCc-cEEEEe-------CCC--CCCCCEEEE-Ee----CCE-EEEecCCCCeEEEEEcCC-CCceE
Confidence 3 346889999987433 333321 110 112233444 32 233 677777788999999777 66556
Q ss_pred eeeccCCCeeEEEee
Q 024245 247 AMKVHLEPGLECSMW 261 (270)
Q Consensus 247 ~~~~~~~~v~~~~~s 261 (270)
.+......+.+|...
T Consensus 326 ~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 326 LLAENLLSPEDMVLF 340 (400)
T ss_dssp EEECSCSCEEEEEEE
T ss_pred EEecCCCCCceEEEE
Confidence 665444445555543
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.71 E-value=0.0046 Score=52.36 Aligned_cols=75 Identities=8% Similarity=0.076 Sum_probs=50.2
Q ss_pred EEEEeC-CCCEEEEecCCC-----------cEEEEeCCCCceeE--EEeecCCCcceEEEEEeeCCCCCEEEEEeC-CCc
Q 024245 23 DVCFHQ-TKPILFAGTTGG-----------ELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGT 87 (270)
Q Consensus 23 ~~~~s~-~~~~l~s~~~dg-----------~i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~~ 87 (270)
.+++.+ ++++++.|+.+. .+.+||..+++... .+..... ....++++.. ++.+++.|+. +..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~-~~~~~~~~~~--~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-MFCPGISMDG--NGQIVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC-CSSCEEEECT--TSCEEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC-CccccccCCC--CCCEEEeCCCCCCc
Confidence 456677 888888887543 58899998875433 2222111 2234567777 8888888884 558
Q ss_pred EEEEEccCCccCC
Q 024245 88 VKCWDIENGGLSS 100 (270)
Q Consensus 88 i~~wd~~~~~~~~ 100 (270)
+.+||..+++...
T Consensus 267 v~~yd~~t~~W~~ 279 (656)
T 1k3i_A 267 TSLYDSSSDSWIP 279 (656)
T ss_dssp EEEEEGGGTEEEE
T ss_pred eEEecCcCCceeE
Confidence 9999998876543
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.70 E-value=0.0091 Score=45.58 Aligned_cols=216 Identities=8% Similarity=-0.048 Sum_probs=109.4
Q ss_pred ccEEEEEEeCCCC-EEEEecCCCcEEEEeCCC---CceeEE-EeecCCCcceEEEEEeeCCCCC-EEEEEeCCCcEEEEE
Q 024245 19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQ---HRTVSS-SWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWD 92 (270)
Q Consensus 19 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd 92 (270)
..+.+++|++.+. ++++-...+.|..+++.. +..... +.... .....+++.+ .+. +.++-...+.|.+.+
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~p~glavd~--~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC--CCcCEEEEee--cCCeEEEEECCCCEEEEEe
Confidence 4578999998554 555556678999999875 122222 22221 3367889886 444 445556778999999
Q ss_pred ccCCccCCCCccceecccceEEEEeeccCCccceecCCC-CceEEEec-cCceeeec----cCCCCCeEecCCCCeEEEE
Q 024245 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE-PKDCYERE-VGETVDTD----SLCDSKDDVPAEGPKYMAV 166 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~----~~~~~~~~~s~~~~~~~~~ 166 (270)
+....... ...........+.+.......+....+ ...++.+. .+...... +.....+++++++..++++
T Consensus 106 ~~g~~~~~----~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 106 TKGVKRKT----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp TTSSSEEE----EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCCCceEE----EEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEE
Confidence 87543211 111111122233333222211222211 12333322 12111111 1111119999988888775
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
- ...+.|..+|+.. .....+.. .. ........++ +. ++. ++++-...+.|..+|..+ ++.+.
T Consensus 182 D-~~~~~I~~~d~dg-~~~~~~~~-------~~--~~~~~P~gia-v~----~~~-ly~~d~~~~~V~~~~~~~-g~~~~ 243 (316)
T 1ijq_A 182 D-SKLHSISSIDVNG-GNRKTILE-------DE--KRLAHPFSLA-VF----EDK-VFWTDIINEAIFSANRLT-GSDVN 243 (316)
T ss_dssp E-TTTTEEEEEETTS-CSCEEEEE-------CT--TTTSSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCCCE
T ss_pred E-CCCCeEEEEecCC-CceEEEee-------cC--CccCCcEEEE-EE----CCE-EEEEECCCCeEEEEeCCC-CcceE
Confidence 4 4468999999873 33333321 00 0112234454 42 244 666777788999999876 55555
Q ss_pred eeeccCCCeeEEEe
Q 024245 247 AMKVHLEPGLECSM 260 (270)
Q Consensus 247 ~~~~~~~~v~~~~~ 260 (270)
.+...-.....|+.
T Consensus 244 ~i~~~~~~p~~i~v 257 (316)
T 1ijq_A 244 LLAENLLSPEDMVL 257 (316)
T ss_dssp EEECSCSCCCCEEE
T ss_pred EEecCCCCceEEEE
Confidence 55432223344433
No 272
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.67 E-value=0.0025 Score=54.40 Aligned_cols=208 Identities=10% Similarity=-0.095 Sum_probs=100.0
Q ss_pred CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE-eCCCcEEEEEccCCccCCCCccceecccceEEEEe
Q 024245 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (270)
Q Consensus 39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (270)
.+.|++.++...+....+... ..+.+|+|.+ .++.|+.+ ...+.|+.+++.+..........+.........+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~---~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC---TTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCcceeeeccC---cceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 356888888766554443332 3467899998 65666654 45678999998751100000011111111112233
Q ss_pred eccCCccceecCCC--CceEEEeccCceeeec---cCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc
Q 024245 118 LVKEPYANAKQANE--PKDCYEREVGETVDTD---SLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (270)
Q Consensus 118 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 192 (270)
+.+.....+..... .+..++.......... +.....+++.|.+.+++++-....+.|..+++. +.....+..
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~-- 536 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT-- 536 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESC--
T ss_pred EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEe--
Confidence 33222223333222 2333333322211111 111122899997777765332223678887775 332323321
Q ss_pred CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee--ccCCCeeEEEeecCCCcee
Q 024245 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~ls 268 (270)
. .......++ |+|+ +++ ++++-...+.|..+|+.. ......+. ..-.....|++..+..|++
T Consensus 537 ------~---~l~~PnGla-vd~~--~~~-LY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~~lywt 600 (699)
T 1n7d_A 537 ------E---NIQWPNGIT-LDLL--SGR-LYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFEDKVFWT 600 (699)
T ss_dssp ------S---SCSSCCCEE-ECTT--TCC-EEEEETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETTEEEEE
T ss_pred ------C---CCCCccEEE-Eecc--CCE-EEEEecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECCEEEEE
Confidence 0 112345566 8885 344 666667778999999874 22222221 1113345566665555444
No 273
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.66 E-value=0.024 Score=49.02 Aligned_cols=214 Identities=11% Similarity=-0.061 Sum_probs=104.0
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 110 (270)
+|+.+. ...|+..++........+... ..+.+|+|.+ .++.| ++-...+.|+.+++............+....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~~---~~~~gl~~d~--~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEECSC---SSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccCCcceeeecCC---CceEEEeecc--cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444433 346888888765544444332 4478999998 54555 4555667888888875321000011111111
Q ss_pred ceEEEEeeccCCccceecCCCCceE--EEeccCceeee---ccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245 111 YHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDT---DSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185 (270)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 185 (270)
.....+++.+.....+........+ .++........ .+.....+++.|.+.+|+++-.+..+.|...++. |...
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~ 549 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDI 549 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCce
Confidence 1222344443332233333332233 33332221111 1111111899998777777543334788888887 4433
Q ss_pred eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc--CCCeeEEEeecC
Q 024245 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--LEPGLECSMWRN 263 (270)
Q Consensus 186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~s~~ 263 (270)
..+.. . .......++ +.|. +++ ++++-...+.|...|+.. ......+... -....+|++..+
T Consensus 550 ~~lv~-------~----~l~~P~GLa-vD~~--~~~-LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav~~~ 613 (791)
T 3m0c_C 550 YSLVT-------E----NIQWPNGIT-LDLL--SGR-LYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED 613 (791)
T ss_dssp EEEEC-------S----SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEETT
T ss_pred EEEEe-------C----CCCCceEEE-EecC--CCe-EEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEEeCC
Confidence 33331 0 122455565 7764 455 555556667899999864 3333333221 123456666555
Q ss_pred CCcee
Q 024245 264 PITMS 268 (270)
Q Consensus 264 g~~ls 268 (270)
..|++
T Consensus 614 ~lYwt 618 (791)
T 3m0c_C 614 KVFWT 618 (791)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 274
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.65 E-value=0.011 Score=45.13 Aligned_cols=72 Identities=15% Similarity=0.047 Sum_probs=49.4
Q ss_pred cEEEEEEeC-CCCEEEEecC-----------------CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEE
Q 024245 20 SVTDVCFHQ-TKPILFAGTT-----------------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (270)
Q Consensus 20 ~v~~~~~s~-~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (270)
..+.+++.+ +|.+.++-.. ++.|..+|..+++.......- .....|+|+| +++.|+.
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~---~~p~gia~~~--dg~~lyv 201 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL---HVPGGAEVSA--DSSFVLV 201 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE---SCCCEEEECT--TSSEEEE
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC---ccCcceEECC--CCCEEEE
Confidence 468899999 8986665432 367888888766544332222 2256899999 8886654
Q ss_pred E-eCCCcEEEEEccCC
Q 024245 82 Q-GRDGTVKCWDIENG 96 (270)
Q Consensus 82 ~-~~d~~i~~wd~~~~ 96 (270)
+ ...+.|.+|++...
T Consensus 202 ~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 202 AEFLSHQIVKYWLEGP 217 (322)
T ss_dssp EEGGGTEEEEEESSST
T ss_pred EeCCCCeEEEEECCCC
Confidence 4 56688999998753
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.63 E-value=0.015 Score=46.00 Aligned_cols=214 Identities=11% Similarity=-0.067 Sum_probs=106.6
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 110 (270)
+|+.+.. ..|+..++........+.. . ..+.+|+|.+ .++.|+ +-...+.|..+++............+....
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~~~~~~~-~--~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEYTSLIPN-L--RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSCEEEECS-C--SCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEecc-ceeEEEccCCcceeEeccc-c--CcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 4444443 5788889886655444433 2 4588999998 555555 445677888888875321000011111122
Q ss_pred ceEEEEeeccCCccceecCCCCceEE--EeccCceeeeccCCC---CCeEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245 111 YHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCD---SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185 (270)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 185 (270)
.....+.+++.....+........+. ++............- ..+++.|.+.+++.+-....+.|...++. +...
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~ 237 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDI 237 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSC
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCcc
Confidence 22233444433232333333222332 222221111111111 11889997777776543334788888886 3333
Q ss_pred eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec--cCCCeeEEEeecC
Q 024245 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--HLEPGLECSMWRN 263 (270)
Q Consensus 186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~s~~ 263 (270)
..+.. . .......++ ++|. +++ +.++-...+.|..+|+.. ......... .-....+|++..+
T Consensus 238 ~~~~~-------~----~l~~P~gla-vd~~--~~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~l~~P~gl~v~~~ 301 (400)
T 3p5b_L 238 YSLVT-------E----NIQWPNGIT-LDLL--SGR-LYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED 301 (400)
T ss_dssp EEEEC-------S----SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CCCEEEEECSSTTSSEEEEEEETT
T ss_pred EEEEE-------C----CCCceEEEE-EEeC--CCE-EEEEECCCCEEEEEeCCC-CccEEEEeCCCCCCCCEEEEEeCC
Confidence 33321 0 122456666 8875 344 555556678899999874 332222222 1234556666555
Q ss_pred CCcee
Q 024245 264 PITMS 268 (270)
Q Consensus 264 g~~ls 268 (270)
..|++
T Consensus 302 ~lywt 306 (400)
T 3p5b_L 302 KVFWT 306 (400)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44444
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.57 E-value=0.015 Score=44.50 Aligned_cols=204 Identities=6% Similarity=-0.121 Sum_probs=103.7
Q ss_pred CCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEccCCccCCCCccceecccceEEE
Q 024245 39 GGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (270)
Q Consensus 39 dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 115 (270)
...|+..++.... ....+... ..+.+++|.+ .++.| ++-...+.|..+++..+.... ..+.........
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~---~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~---~~~~~~l~~p~g 83 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGL---EDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQ---NVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEE---EEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCC---EEEEECCSCCCE
T ss_pred cCeEEEEECCCCceEEEEEecCC---CccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceE---EEEcCCCCCccE
Confidence 3579999988653 22222222 3367999998 54454 455567889999987653211 011111111122
Q ss_pred EeeccCCccceecCCCC--ceEEEeccCceeeecc-CCCC---CeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245 116 LSLVKEPYANAKQANEP--KDCYEREVGETVDTDS-LCDS---KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 116 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~---~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 189 (270)
+.+.+.....+...... +..++...... .... .... .+++.|.+..++.+-....+.|...++. |.....+.
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~ 161 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII 161 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEE
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEE
Confidence 33332222222222222 22233322111 1111 1111 1888887777776543335788888876 33333332
Q ss_pred cCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS 268 (270)
Q Consensus 190 ~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls 268 (270)
. . .-.....++ ++|+ +++ +.++-+..+.|..+|+.. ........+.......+++..++.|.+
T Consensus 162 ~-------~----~l~~Pngla-vd~~--~~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~~~lywt 224 (318)
T 3sov_A 162 N-------S----EIYWPNGLT-LDYE--EQK-LYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFEDILYWT 224 (318)
T ss_dssp C-------S----SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEETTEEEEE
T ss_pred E-------C----CCCCccEEE-Eecc--CCE-EEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeCCEEEEE
Confidence 1 0 122455676 8875 344 666666778999999874 322222232334567777766655554
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.57 E-value=0.0061 Score=52.52 Aligned_cols=138 Identities=9% Similarity=0.012 Sum_probs=75.9
Q ss_pred ceEEEEEe-eCCCCCEEEEE-eCCC----cEEEEEccCC-ccCCCCccceecccceEEEEeeccCCccceecCCCCceEE
Q 024245 64 GIVSVATG-PSIGLNKVISQ-GRDG----TVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY 136 (270)
Q Consensus 64 ~v~~~~~~-~~~~~~~l~s~-~~d~----~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (270)
.+...+|+ | ||++|+-+ +.+| .|+++|+.++ +... ..+.. . ..
T Consensus 175 ~~~~~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~~~~-----~---~~----------------- 224 (751)
T 2xe4_A 175 DVMEVKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DKVSG-----T---NG----------------- 224 (751)
T ss_dssp EEEEEEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---CCEEE-----E---CS-----------------
T ss_pred EEeeeEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---ccccC-----c---ee-----------------
Confidence 47889999 9 99988743 3333 5999999987 5221 00100 0 00
Q ss_pred EeccCceeeeccCCCCCeEecCCCCeEEEEecCCC---ceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeee
Q 024245 137 EREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL---SEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQ 211 (270)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~ 211 (270)
.++|+|||+.++.+.-... ..|+++++.+++. ...+.. . .......+.
T Consensus 225 ----------------~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~--------~---~~~~~~~~~ 277 (751)
T 2xe4_A 225 ----------------EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE--------H---NPLFSAFMY 277 (751)
T ss_dssp ----------------CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC--------C---CTTCEEEEE
T ss_pred ----------------eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec--------C---CCceEEEEE
Confidence 0569999988876543211 3688888877642 222321 0 112345566
Q ss_pred ecCCCCCCCceEEEEec--CCCcEEEEEcCCCC-cc--eeeeeccCCCeeEEEeec
Q 024245 212 AYLPSKSQGFVNVLAGY--EDGSILVWDIRNPG-IP--LTAMKVHLEPGLECSMWR 262 (270)
Q Consensus 212 ~~~p~~~~g~~~l~~~~--~dg~i~vwd~~~~~-~~--~~~~~~~~~~v~~~~~s~ 262 (270)
|+|+ |+.++++.. ....|+++|+.++. +. ............++.|+.
T Consensus 278 -~SpD---g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 278 -KAAD---TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp -ECTT---SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred -ECCC---CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 9984 653333332 23468889988732 22 222233334445555443
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.54 E-value=0.016 Score=44.18 Aligned_cols=209 Identities=11% Similarity=-0.052 Sum_probs=105.2
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCC---ccCCCCcccee
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENG---GLSSNPSLTIK 107 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~---~~~~~~~~~~~ 107 (270)
+|+.+.. ..|+..|+...+....+... ....+++|.+ .++.|+ +-..++.|..+++... .... ..+.
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~---~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~---~~~~ 73 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYD---TVIS 73 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSC---SSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CE---EEEC
T ss_pred EEEEECC-CeEEEEECCCcceEehhcCC---CceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccE---EEEe
Confidence 3444433 46999999877665554432 4478999998 555555 5556788999998762 1110 0111
Q ss_pred cccceEEEEeeccCCccceecCC--CCceEEEeccCceeeeccC--CCCC--eEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245 108 TNSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGETVDTDSL--CDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (270)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~ 181 (270)
........+.+++.....+.... ..+..++...... ..... .... +++.|.+..++++.....+.|..+++.
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d- 151 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 151 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-
Confidence 11111122333322222222222 2223333332211 11111 1111 889997777776443323788888875
Q ss_pred cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee-ec--cCCCeeEE
Q 024245 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KV--HLEPGLEC 258 (270)
Q Consensus 182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~--~~~~v~~~ 258 (270)
+.....+.. . .......++ ++|+ +++ ++++-...+.|..+|+.. .. ...+ .. .-.....|
T Consensus 152 G~~~~~~~~-------~----~~~~P~gla-~d~~--~~~-lY~~D~~~~~I~~~d~dg-~~-~~~~~~~~~~~~~P~gi 214 (316)
T 1ijq_A 152 GVDIYSLVT-------E----NIQWPNGIT-LDLL--SGR-LYWVDSKLHSISSIDVNG-GN-RKTILEDEKRLAHPFSL 214 (316)
T ss_dssp SCCEEEEEC-------S----SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CS-CEEEEECTTTTSSEEEE
T ss_pred CCCeEEEEE-------C----CCCCceEEE-Eecc--CCE-EEEEECCCCeEEEEecCC-Cc-eEEEeecCCccCCcEEE
Confidence 443333321 0 122455666 8875 344 566666778999999874 22 2222 21 12345677
Q ss_pred EeecCCCcee
Q 024245 259 SMWRNPITMS 268 (270)
Q Consensus 259 ~~s~~g~~ls 268 (270)
++..+..|++
T Consensus 215 av~~~~ly~~ 224 (316)
T 1ijq_A 215 AVFEDKVFWT 224 (316)
T ss_dssp EEETTEEEEE
T ss_pred EEECCEEEEE
Confidence 7765444443
No 279
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.46 E-value=0.022 Score=43.77 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=38.8
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC--CCC---EEEEEe-C--CCcEEEEEcc
Q 024245 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GLN---KVISQG-R--DGTVKCWDIE 94 (270)
Q Consensus 30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~~-~--d~~i~~wd~~ 94 (270)
..+++.....+-+.+||+ .|+.++.+.. ..++.+..-|.. .|+ ++++.. . +++|.+|++.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 346666667788999999 7888888754 236777766600 122 233333 3 5789999874
No 280
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.45 E-value=0.048 Score=47.33 Aligned_cols=229 Identities=10% Similarity=-0.024 Sum_probs=115.4
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeec-----CCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH-----SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
...|.++...+++.+.+....+| |.+||..+++........ .....|.++...+ +|.+.+ |+.+| |.+||
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lWi-gt~~G-l~~~~ 288 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS--QNRLWI-GTFND-LNIYH 288 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT--TSCEEE-EESSC-EEEEE
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC--CCCEEE-EeCCh-hheEc
Confidence 45688888888776555433345 899998776544322111 0114589998887 766554 44454 88899
Q ss_pred ccCCccCCCCccc---eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc-C-----CCCC---eEecCCC
Q 024245 93 IENGGLSSNPSLT---IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-L-----CDSK---DDVPAEG 160 (270)
Q Consensus 93 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~---~~~s~~~ 160 (270)
..++......... ..-....+..+..+..........++....++........... . .... +...++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC
Confidence 8766432100000 0000112223333333333333333344444443332111111 0 0111 4455666
Q ss_pred CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcc-cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS-SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~-~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
. +.+ |..++-|..||..+++......... ... .-....+.++. ..+ +|+ +|..|+.++-|..||..
T Consensus 369 ~-lWi--Gt~~~Gl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~v~~i~-~d~---~g~-~lWigt~~~Gl~~~d~~ 435 (795)
T 4a2l_A 369 N-LWI--GTNDGGLNLYNPITQRFTSYTLQED-----ESARGIGSNNIKAVY-VDE---KKS-LVYIGTHAGGLSILHRN 435 (795)
T ss_dssp C-EEE--EESSSCEEEECTTTCCEEEECCC-----------CCSCSCEEEEE-EET---TTT-EEEEEETTTEEEEEETT
T ss_pred C-EEE--EECCCCeEEEcCCCCcEEEEecCCC-----CcccCCCCccEEEEE-EcC---CCC-EEEEEeCcCceeEEeCC
Confidence 5 443 4445679999988765433221100 000 00123466665 443 353 47778877789999988
Q ss_pred CCCcceeeee-----ccCCCeeEEEeecCCCc
Q 024245 240 NPGIPLTAMK-----VHLEPGLECSMWRNPIT 266 (270)
Q Consensus 240 ~~~~~~~~~~-----~~~~~v~~~~~s~~g~~ 266 (270)
+ ++. ..+. .....|.++...++|.+
T Consensus 436 ~-~~~-~~~~~~~~~l~~~~v~~i~~d~~g~l 465 (795)
T 4a2l_A 436 S-GQV-ENFNQRNSQLVNENVYAILPDGEGNL 465 (795)
T ss_dssp T-CCE-EEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred C-CcE-EEeecCCCCcCCCeeEEEEECCCCCE
Confidence 6 442 2222 12356888888777764
No 281
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.44 E-value=0.025 Score=43.86 Aligned_cols=167 Identities=9% Similarity=0.015 Sum_probs=80.1
Q ss_pred cccccccEEEEEEeCCCCEEEEec------------CCCcEEEEeCCCC-ceeEEEeecC-----CCcceEEEEEeeCCC
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGT------------TGGELRIWDTVQH-RTVSSSWVHS-----AAHGIVSVATGPSIG 75 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~------------~dg~i~vwd~~~~-~~~~~~~~~~-----~~~~v~~~~~~~~~~ 75 (270)
+++-......+...|+|..+++++ .+|.|.++|.++. .....+.... ..-....+.+.+..+
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 444334566777888886555542 6899999998742 1122222211 112467788766212
Q ss_pred CC-EEEEE-eC--CCcEEEEEccCCccCCCCccceecccce-EEEEeeccCCcc-----cee-----------cCCCCce
Q 024245 76 LN-KVISQ-GR--DGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYA-----NAK-----------QANEPKD 134 (270)
Q Consensus 76 ~~-~l~s~-~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~-----------~~~~~~~ 134 (270)
+. +|+.+ .. +.+|.+|++.........+..+...... ...+.+...... ... .......
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~ 204 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF 204 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence 33 34443 33 5678888887543211112222221111 111111111100 000 0111233
Q ss_pred EEEeccCce--eeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245 135 CYEREVGET--VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (270)
Q Consensus 135 ~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~ 181 (270)
++.+..++. +...+.....++|+||++.++++-. ..+.|..|++..
T Consensus 205 vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt-~~~~I~~~~~~~ 252 (355)
T 3sre_A 205 VTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAEL-LAHKIHVYEKHA 252 (355)
T ss_dssp EEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEG-GGTEEEEEEECT
T ss_pred EEEEECCeEEEeecCCcccCcceECCCCCEEEEEeC-CCCeEEEEEECC
Confidence 444433321 1112222222999999998887543 468999999863
No 282
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.40 E-value=0.037 Score=46.12 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=42.8
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeecCCCcc-------eEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG-------IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
.++.++.++.|.-+|..+|+.+..+........ ...+++ .+..++.++.|+.|.-+|..+++..
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~ 140 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVV 140 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEE
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 455555534599999999999888765432110 012233 2367888888999999999998764
No 283
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.29 E-value=0.074 Score=46.13 Aligned_cols=222 Identities=9% Similarity=0.005 Sum_probs=113.4
Q ss_pred EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (270)
Q Consensus 21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 99 (270)
|.++...+++.+.+ |+.++-|..|+..+++...... ... ..|.++...+ ++.+.+ ++.++-|..||..+++..
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~--~~i~~i~~d~--~g~lwi-gt~~~Gl~~~~~~~~~~~ 248 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGT--KQIQAILQQS--PTRIWV-ATEGAGLFLINPKTKEIK 248 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----C--CCEEEEEEEE--TTEEEE-EEBSSCEEEEETTTTEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCC--CeeEEEEEcC--CCCEEE-EECCCCeEEEeCCCCeEE
Confidence 88888888876554 5554458999987765443221 122 4588998888 755554 444434888998776432
Q ss_pred CCCccc---eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC-------CCC---eEecCCCCeEEEE
Q 024245 100 SNPSLT---IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-------DSK---DDVPAEGPKYMAV 166 (270)
Q Consensus 100 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~s~~~~~~~~~ 166 (270)
...... ..-....+..+..+........... ....++............. ... +...++|. +.+
T Consensus 249 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi- 325 (795)
T 4a2l_A 249 NYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWL- 325 (795)
T ss_dssp EECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEE-
T ss_pred EeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEE-
Confidence 100000 0000112233333333322222222 3444554444322211110 111 55667776 443
Q ss_pred ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
|+.++-|..|+..++... .+.... ....-....+.++. ..+ +| .|..|+.++-|..||..+ +....
T Consensus 326 -gt~~~Gl~~~~~~~~~~~-~~~~~~-----~~~~l~~~~V~~i~-~d~---~g--~lWiGt~~~Gl~~~~~~~-~~~~~ 391 (795)
T 4a2l_A 326 -GTYFGGLNYYHPIRNRFK-NIRNIP-----YKNSLSDNVVSCIV-EDK---DK--NLWIGTNDGGLNLYNPIT-QRFTS 391 (795)
T ss_dssp -EESSSCEEEECGGGGSSE-EECCCT-----TSSSCSCSSEEEEE-ECT---TS--CEEEEESSSCEEEECTTT-CCEEE
T ss_pred -EECCCCeEEeCCCcccce-EEcCCC-----CCCCCCCCeeEEEE-ECC---CC--CEEEEECCCCeEEEcCCC-CcEEE
Confidence 334577899987755432 222100 00011123466665 544 45 466677787899999876 33222
Q ss_pred eee--------ccCCCeeEEEeecCCC
Q 024245 247 AMK--------VHLEPGLECSMWRNPI 265 (270)
Q Consensus 247 ~~~--------~~~~~v~~~~~s~~g~ 265 (270)
... .....|.++...++|.
T Consensus 392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~ 418 (795)
T 4a2l_A 392 YTLQEDESARGIGSNNIKAVYVDEKKS 418 (795)
T ss_dssp ECCC------CCSCSCEEEEEEETTTT
T ss_pred EecCCCCcccCCCCccEEEEEEcCCCC
Confidence 111 1235688888888876
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.27 E-value=0.053 Score=44.00 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=41.9
Q ss_pred cEEEEEEeC-CCC-EEEEecCCCcEEEEeCCCCceeEEEeecC-CCcceEEEEE-------eeCCCCCEEEEEeCCC
Q 024245 20 SVTDVCFHQ-TKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVAT-------GPSIGLNKVISQGRDG 86 (270)
Q Consensus 20 ~v~~~~~s~-~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~~~l~s~~~d~ 86 (270)
....|+|.| ++. ++++-...+.|++.|++++.......... .......|+| ++ +++.|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~--~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD--EAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC--TTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC--CCCEEEEEeCCC
Confidence 467899998 344 44444444678889988766654443321 1134789999 99 888666665543
No 285
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.23 E-value=0.073 Score=44.83 Aligned_cols=210 Identities=6% Similarity=-0.085 Sum_probs=108.8
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 110 (270)
+|+.+ ....|+..+++.......+....- ..+.+|+|.+ .++.|+ +-..++.|..+++....... .+....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~-~~~~~l~~d~--~~~~lywtD~~~~~I~r~~~~g~~~~~----v~~~g~ 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGV-KEASALDFDV--TDNRIYWTDISLKTISRAFMNGSALEH----VVEFGL 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSC-SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEE----EECSSC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCC-CceEEEEEEC--CCCEEEEEECCCCeEEEEECCCCCcEE----EEeCCC
Confidence 44443 345799999986554433332211 3478999998 555555 55567889888887543211 111111
Q ss_pred ceEEEEeeccCCccceecCCCCceE--EEeccCc--eee-eccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245 111 YHFCKLSLVKEPYANAKQANEPKDC--YEREVGE--TVD-TDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185 (270)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~-~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 185 (270)
.....+++++.....+........+ .++.... .+. ..+.....+++.|....++.+--+..+.|...++.... .
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~ 158 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-R 158 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-e
Confidence 1122233433322222223222233 2332221 111 11111111889987667776543335678888876433 3
Q ss_pred eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPI 265 (270)
Q Consensus 186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 265 (270)
..+.. .......++ +.+. .++ +.++-...+.|...|+.. ... ..+........+|++..+..
T Consensus 159 ~~l~~------------~~~~P~Gla-lD~~--~~~-LY~aD~~~~~I~~~d~dG-~~~-~v~~~~l~~P~glav~~~~l 220 (628)
T 4a0p_A 159 TTLVP------------NVGRANGLT-IDYA--KRR-LYWTDLDTNLIESSNMLG-LNR-EVIADDLPHPFGLTQYQDYI 220 (628)
T ss_dssp EEEEC------------SCSSEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CSC-EEEEECCSCEEEEEEETTEE
T ss_pred EEEEC------------CCCCcceEE-Eccc--cCE-EEEEECCCCEEEEEcCCC-Cce-EEeeccCCCceEEEEECCEE
Confidence 33321 122455666 7774 344 566666778899999875 322 33443344566787776655
Q ss_pred cee
Q 024245 266 TMS 268 (270)
Q Consensus 266 ~ls 268 (270)
|.+
T Consensus 221 y~t 223 (628)
T 4a0p_A 221 YWT 223 (628)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 286
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.16 E-value=0.087 Score=44.28 Aligned_cols=186 Identities=5% Similarity=-0.073 Sum_probs=94.3
Q ss_pred ccEEEEEEeCCCCEEE-EecCCCcEEEEeCCCCce-eEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEccC
Q 024245 19 ASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIEN 95 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~ 95 (270)
..+.+++|++.+..|+ +=...+.|..+++..... ...+.... .....+++.+ .++.| ++-...+.|.+.++..
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~--~~P~GlAvD~--~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDW--LGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSC--SCEEEEEEET--TTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCC--CCcCeEEEEe--cCCEEEEEeCCCCEEEEEECCC
Confidence 4578899998555554 444567888888875432 22232222 3478999988 55555 4555678899988875
Q ss_pred CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEE
Q 024245 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~ 175 (270)
.... .+-.. .+.....+++.|.+.+++++--...+.|.
T Consensus 116 ~~~~-----~l~~~-------------------------------------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 116 SLRK-----VLFWQ-------------------------------------ELDQPRAIALDPSSGFMYWTDWGEVPKIE 153 (619)
T ss_dssp CSCE-----EEECS-------------------------------------SCSCCCCEEEETTTTEEEEEECSSSCEEE
T ss_pred CCEE-----EEEeC-------------------------------------CCCCCceEEEecCCCeEEEeccCCCCEEE
Confidence 4321 01000 01111116677776666664423345676
Q ss_pred EEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCe
Q 024245 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPG 255 (270)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 255 (270)
..++. |.....+.. . .......++ +.|. +++ ++++-...+.|...|+.. ........+.....
T Consensus 154 r~~~d-G~~~~~l~~-------~----~~~~P~Gla-ld~~--~~~-LY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P 216 (619)
T 3s94_A 154 RAGMD-GSSRFIIIN-------S----EIYWPNGLT-LDYE--EQK-LYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHP 216 (619)
T ss_dssp EEETT-SCSCEEEEC-------S----SCSSEEEEE-EETT--TTE-EEEEETTTCCEEEESSSC-CEEC---------C
T ss_pred EEECC-CCceEEEEe-------C----CCCCCcEEE-EEcc--CCE-EEEEeCCCCeEEEecCCC-CccEEEEeCCCCCc
Confidence 66665 333333321 0 112345565 7764 344 555556677888888764 22222222112233
Q ss_pred eEEEeecCCCce
Q 024245 256 LECSMWRNPITM 267 (270)
Q Consensus 256 ~~~~~s~~g~~l 267 (270)
.+|++..+..|.
T Consensus 217 ~gi~~~~~~ly~ 228 (619)
T 3s94_A 217 FALTLFEDILYW 228 (619)
T ss_dssp CCEEESSSEEEE
T ss_pred eEEEEeCCEEEE
Confidence 455555554333
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.027 Score=45.04 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=52.4
Q ss_pred eEecCCCCeEEEEecCC---CceEEEEeCCCccee--eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec
Q 024245 154 DDVPAEGPKYMAVAGEQ---LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~---d~~i~iwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~ 228 (270)
++|+++|+.++++.... ...+..++. .+... ..+.. ......++ ++|+ +|. ++++-.
T Consensus 184 ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-------------~~~p~gia-vdp~--~g~-lyv~d~ 245 (430)
T 3tc9_A 184 ICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-------------GQNCNGAE-THPI--NGE-LYFNSW 245 (430)
T ss_dssp EEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-------------CSSCCCEE-ECTT--TCC-EEEEET
T ss_pred EEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-------------CCCceEEE-EeCC--CCE-EEEEEC
Confidence 67889998777643321 113433443 33322 22220 11234455 8874 454 666666
Q ss_pred CCCcEEEEEcCCCCcceeeeec-cCCCeeEEEeecCCC
Q 024245 229 EDGSILVWDIRNPGIPLTAMKV-HLEPGLECSMWRNPI 265 (270)
Q Consensus 229 ~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~s~~g~ 265 (270)
.++.|..+|... +........ .......|+|+|+|.
T Consensus 246 ~~~~V~~~~~~~-~~~~~~~~~~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 246 NAGQVFRYDFTT-QETTPLFTIQDSGWEFHIQFHPSGN 282 (430)
T ss_dssp TTTEEEEEETTT-TEEEEEEECSSSSCCEEEEECTTSS
T ss_pred CCCEEEEEECCC-CcEEEEEEcCCCCcceeEEEcCCCC
Confidence 788999999886 432122221 124578999999997
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.04 E-value=0.066 Score=40.85 Aligned_cols=83 Identities=4% Similarity=0.083 Sum_probs=51.9
Q ss_pred cccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEE-Eee----cCCCcceEEEEE---eeCCCCCEEEEEe-
Q 024245 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSS-SWV----HSAAHGIVSVAT---GPSIGLNKVISQG- 83 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~----~~~~~~v~~~~~---~~~~~~~~l~s~~- 83 (270)
+....---.+++|.+ ++.++++.-..+.|..||...+..... +.. ......+..|.| .| ++.++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~grL~vv~~~ 85 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--SKRLFAVMKN 85 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--CCEEEEEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--CCcEEEEEcc
Confidence 444444556789988 455555555899999999875543333 221 111123689999 57 756665433
Q ss_pred ------------CCCcEEEEEcc---CCcc
Q 024245 84 ------------RDGTVKCWDIE---NGGL 98 (270)
Q Consensus 84 ------------~d~~i~~wd~~---~~~~ 98 (270)
.+..|..||+. +++.
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~ 115 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKP 115 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCC
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCE
Confidence 25778899988 6654
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.01 E-value=0.12 Score=43.43 Aligned_cols=211 Identities=8% Similarity=-0.087 Sum_probs=111.0
Q ss_pred ccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCC-EEEEEeCCCcEEEEEccCC
Q 024245 19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 19 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~ 96 (270)
..+.+++|++.+. ++++-..++.|+.+++........+.... .....|++.+ .+. +.++-...+.|.+.++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~--~~P~GlAvD~--~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL--DYPEGMAVDW--LGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEEETTST
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC--CCcceEEEEe--CCCEEEEEECCCCEEEEEecCCC
Confidence 4578999998544 45555667889999987544433333222 3467888887 444 4456566788999998754
Q ss_pred ccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEe--ccCc--eeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYER--EVGE--TVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~d 171 (270)
.... + ....-.....+.+.......+... +....++.. .... .+...+.....+++.+++..++++-. ..
T Consensus 113 ~~~~--l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~-~~ 187 (628)
T 4a0p_A 113 HRQV--L--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDL-DT 187 (628)
T ss_dssp TCEE--E--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEET-TT
T ss_pred cEEE--E--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEEC-CC
Confidence 3211 1 111111223333332222222222 212233322 2111 11111111111899998888877544 46
Q ss_pred ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 251 (270)
+.|..+|+..... ..+.. . ......++ +. .+. ++++-...+.|...|..+ ++....+...
T Consensus 188 ~~I~~~d~dG~~~-~v~~~--------~----l~~P~gla-v~----~~~-ly~tD~~~~~I~~~dk~t-g~~~~~l~~~ 247 (628)
T 4a0p_A 188 NLIESSNMLGLNR-EVIAD--------D----LPHPFGLT-QY----QDY-IYWTDWSRRSIERANKTS-GQNRTIIQGH 247 (628)
T ss_dssp TEEEEEETTSCSC-EEEEE--------C----CSCEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCSCEEEECS
T ss_pred CEEEEEcCCCCce-EEeec--------c----CCCceEEE-EE----CCE-EEEecCCCCEEEEEECCC-CCceEEEecC
Confidence 8899999875433 33331 0 11234454 43 233 666667788999999877 5544444433
Q ss_pred CCCeeEE
Q 024245 252 LEPGLEC 258 (270)
Q Consensus 252 ~~~v~~~ 258 (270)
...+.+|
T Consensus 248 ~~~p~~i 254 (628)
T 4a0p_A 248 LDYVMDI 254 (628)
T ss_dssp CCSCCEE
T ss_pred CCCccee
Confidence 3333443
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.91 E-value=0.11 Score=41.49 Aligned_cols=158 Identities=12% Similarity=0.055 Sum_probs=86.1
Q ss_pred cEEEEEEeCC--CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---Cc-EEEEEc
Q 024245 20 SVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GT-VKCWDI 93 (270)
Q Consensus 20 ~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~-i~~wd~ 93 (270)
....++|+|+ +..|+.+...+.|+.+|..+++...... .. .....+++++ +++++++-... .. +...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~--~~P~giavd~--dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NI--GQCADVNFTL--NGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CC--SCEEEEEECT--TCCEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CC--CCccEEEECC--CCCEEEEcCCCCcccceEEEEEC
Confidence 4578999984 3345444444889999998776554433 22 4589999999 88844443321 11 111221
Q ss_pred cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCce
Q 024245 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~ 173 (270)
..+ ... ...+. .+.....+++.|+...+++ +-..++.
T Consensus 215 ~~~-~~~------------~~~~~-----------------------------~~~~P~giavd~~~G~lyv-~d~~~~~ 251 (433)
T 4hw6_A 215 ASG-FTE------------RLSLC-----------------------------NARGAKTCAVHPQNGKIYY-TRYHHAM 251 (433)
T ss_dssp GGT-TCC------------EEEEE-----------------------------ECSSBCCCEECTTTCCEEE-CBTTCSE
T ss_pred CCC-eec------------ccccc-----------------------------ccCCCCEEEEeCCCCeEEE-EECCCCE
Confidence 111 000 00000 1111111678884345555 3445688
Q ss_pred EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (270)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~ 239 (270)
|+.+|..++.....+.. .. . ......++ |+|+ |..++++-...+.|+.++..
T Consensus 252 V~~~d~~~g~~~~~~~~-------~~-~--~~~~~~ia-~dpd---G~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 252 ISSYDPATGTLTEEEVM-------MD-T--KGSNFHIV-WHPT---GDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEECTTTCCEEEEEEE-------CS-C--CSSCEEEE-ECTT---SSEEEEEETTTTEEEEEEBC
T ss_pred EEEEECCCCeEEEEEec-------cC-C--CCCcccEE-EeCC---CCEEEEEeCCCCEEEEEeCC
Confidence 99999987765333321 00 0 11223466 9985 44355666677889998875
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.77 E-value=0.04 Score=44.71 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=37.5
Q ss_pred eeeeeecCCCCCCCceEEEEecCCCcEEEEEcC-------CCCcc-----------eee-ee-ccCCCeeEEEeecCCC-
Q 024245 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR-------NPGIP-----------LTA-MK-VHLEPGLECSMWRNPI- 265 (270)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~-------~~~~~-----------~~~-~~-~~~~~v~~~~~s~~g~- 265 (270)
+..++ .+|+ ++. ++++-..++.|+.+|+. + +.. ... +. +.......|+|+|+|.
T Consensus 249 p~gia-vdp~--~g~-LYvtd~~~g~V~r~d~~~~~~~~~t-g~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~ 323 (496)
T 3kya_A 249 CNGAT-IHPI--NGE-LYFNSYEKGQVFRLDLVDYFKTIKN-GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKY 323 (496)
T ss_dssp CCCEE-ECTT--TCC-EEEEETTTTEEEEECHHHHHHHHHT-TCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSE
T ss_pred ceEEE-EcCC--CCe-EEEEECCCCEEEEEecccccccccC-ceeecccccccccccceeEecCCCCCceEEEEcCCCCE
Confidence 44555 7874 444 77777888899999997 4 332 112 11 2234568999999997
Q ss_pred -cee
Q 024245 266 -TMS 268 (270)
Q Consensus 266 -~ls 268 (270)
|++
T Consensus 324 lYva 327 (496)
T 3kya_A 324 AYFG 327 (496)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 565
No 292
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.73 E-value=0.06 Score=42.52 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=55.7
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc------------eeEEEeecC----CCcceEEEEEeeCC-CCCEEEEE
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------------TVSSSWVHS----AAHGIVSVATGPSI-GLNKVISQ 82 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~~~~----~~~~v~~~~~~~~~-~~~~l~s~ 82 (270)
.|..+..+|+|++||..+.. .|.|-.+..+. ..+.+.... ...+|..+.|+|.. .+..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 57789999999999988754 79998887321 112333221 12679999999932 24589999
Q ss_pred eCCCcEEEEEccCC
Q 024245 83 GRDGTVKCWDIENG 96 (270)
Q Consensus 83 ~~d~~i~~wd~~~~ 96 (270)
..|+.|++||+...
T Consensus 146 tsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 146 KEDDTITMFDILNS 159 (452)
T ss_dssp ETTSCEEEEETTCT
T ss_pred ecCCEEEEEEcccC
Confidence 99999999999873
No 293
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.70 E-value=0.34 Score=43.93 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=51.8
Q ss_pred cccEEEEEEeCC------CCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 18 RASVTDVCFHQT------KPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 18 ~~~v~~~~~s~~------~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
...|.|+++.|. +.+++.|.. |++|+|+++...+.+........ ....++.+.......+|..|-.||.+..
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 457999999863 368999986 99999999987666654433211 2355565554223357888989998766
Q ss_pred EEcc
Q 024245 91 WDIE 94 (270)
Q Consensus 91 wd~~ 94 (270)
+.+.
T Consensus 632 ~~~d 635 (1158)
T 3ei3_A 632 FGLN 635 (1158)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6553
No 294
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.49 E-value=0.083 Score=41.75 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=64.4
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcce------------eeeeccCcCCCCCCc-ccCCCceeeeeeecCCCCCCC
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER------------CTRLHQNSCGGSPNF-SSKGRGMCMAVQAYLPSKSQG 220 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~p~~~~g 220 (270)
+..+|+|..+.+ .| +..|.|-.+..+.. .+.+.. +. .......+..+. |+|-+..+
T Consensus 71 lvlSpsG~lLAl-~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l-------~~~~~~~~s~I~qVl-WHPl~~~d 139 (452)
T 3pbp_A 71 VISSTSGDLLCL-FN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI-------DEEEVGPKSSIKKVL-FHPKSYRD 139 (452)
T ss_dssp EEECTTSSEEEE-EC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG-------GGCC--CCCCEEEEE-ECTTBGGG
T ss_pred EEECCCCCEEEE-ec--CCeEEEEEecCccccCcccccccccceeEEEc-------CCcccCCCCceeEEE-eccccCCC
Confidence 568999975544 56 47899998873320 112221 10 011245677787 99987766
Q ss_pred ceEEEEecCCCcEEEEEcCCC-Ccceeeee---------ccCCCeeEEEeecCCCc
Q 024245 221 FVNVLAGYEDGSILVWDIRNP-GIPLTAMK---------VHLEPGLECSMWRNPIT 266 (270)
Q Consensus 221 ~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~---------~~~~~v~~~~~s~~g~~ 266 (270)
. .|++-..|+.|++||+... .+|. .++ .....|.+++|.++|..
T Consensus 140 s-~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 140 S-CIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp C-EEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred C-eEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 6 8999999999999999852 2333 332 12257889999987654
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.36 E-value=0.24 Score=38.18 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=50.6
Q ss_pred ccEEEEEE--eC-CCC-EEEEecCCCcEEEEeCC-------CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245 19 ASVTDVCF--HQ-TKP-ILFAGTTGGELRIWDTV-------QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (270)
Q Consensus 19 ~~v~~~~~--s~-~~~-~l~s~~~dg~i~vwd~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 87 (270)
..+..+++ +| .+. +++....+|.+..|++. +.+.++++... ..+..+...+ ....|+.+-++.-
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd--~~g~Lyv~eEd~G 202 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADD--EYGRLYIAEEDEA 202 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEET--TTTEEEEEETTTE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcC--CCCeEEEecccce
Confidence 45666777 67 354 67888889999999983 23566777654 4488999998 7789999998865
Q ss_pred EEEEEc
Q 024245 88 VKCWDI 93 (270)
Q Consensus 88 i~~wd~ 93 (270)
|..++.
T Consensus 203 Iw~~da 208 (355)
T 3amr_A 203 IWKFSA 208 (355)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 544453
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.33 E-value=0.4 Score=40.36 Aligned_cols=75 Identities=5% Similarity=-0.090 Sum_probs=47.2
Q ss_pred ccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 19 ~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
..+.+++|.+. +.++++-...+.|+.+++........+.... .....+++.+. .+++.++-+..+.|.+.++...
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~--~~p~GlAvD~~-~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI--AHPDGIAVDWV-ARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCC--CCcCceEEecc-cCcEEEEeCCCCcEEEEeCCCC
Confidence 34678999884 4444454557788888887544333333222 34678888862 3345556566788888888754
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.29 E-value=0.27 Score=38.07 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=46.0
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee--EEEe-ecCCCcceEEEEEeeCCC---CCEEEEE-eCC-----
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSW-VHSAAHGIVSVATGPSIG---LNKVISQ-GRD----- 85 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~-~~~~~~~v~~~~~~~~~~---~~~l~s~-~~d----- 85 (270)
-...+.|+|.|+|+++++ ..+|.|++++ .++.. ..+. ..........|+|+| + +..|+.+ ...
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEECTTSSE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC--CCCCCCEEEEEEecCCCCCc
Confidence 345689999999986655 5569999998 34322 1111 111124589999999 6 4455443 322
Q ss_pred CcEEEEEccCC
Q 024245 86 GTVKCWDIENG 96 (270)
Q Consensus 86 ~~i~~wd~~~~ 96 (270)
+.|..|+...+
T Consensus 105 ~~v~r~~~~~~ 115 (352)
T 2ism_A 105 NQVVRLRHLGE 115 (352)
T ss_dssp EEEEEEEECSS
T ss_pred cEEEEEEeCCC
Confidence 56777777643
No 298
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.13 E-value=0.25 Score=36.26 Aligned_cols=74 Identities=3% Similarity=0.078 Sum_probs=51.1
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce---eEEEee----cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWV----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 91 (270)
.....+++.+++.++++.-.++.+.++++..... +..... .........|+|.| .++.|+++.+.....+|
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~--~~~~L~va~E~~p~~i~ 147 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR--QDHTFWFFKEKNPIEVY 147 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET--TTTEEEEEEESSSEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC--CCCEEEEEECcCCceEE
Confidence 4567888888888777766678899998865432 222221 11224579999999 87788877777677777
Q ss_pred Ecc
Q 024245 92 DIE 94 (270)
Q Consensus 92 d~~ 94 (270)
.+.
T Consensus 148 ~~~ 150 (255)
T 3qqz_A 148 KVN 150 (255)
T ss_dssp EEE
T ss_pred EEc
Confidence 776
No 299
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.10 E-value=0.61 Score=40.38 Aligned_cols=225 Identities=7% Similarity=-0.065 Sum_probs=108.6
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-------e-----cCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-------V-----HSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
...|.++...++|. |..|+..+-|.++|..+++...... . .-....|.++...+ +|+ |..|+.+
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FNN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SCC-EEEEEBS
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CCC-EEEEecC
Confidence 35688998888875 4445553458889987654332111 0 01114588998887 755 5556666
Q ss_pred CcEEEEEccCCccCCCCccc----eec-ccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc--CCC-CC---e
Q 024245 86 GTVKCWDIENGGLSSNPSLT----IKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS--LCD-SK---D 154 (270)
Q Consensus 86 ~~i~~wd~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~---~ 154 (270)
+-|..++..+.....-.... ... ....+..+..+..........+.....++........... ... .. +
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 66888887765422100000 000 0112222333322222222223334444443322111100 011 11 4
Q ss_pred EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (270)
Q Consensus 155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~ 234 (270)
...++|. +.+ |..++.|..+|..+++.. .+.. . ......+.++. ..+ +|. |..|.. +-|.
T Consensus 413 ~~d~~g~-lWi--gt~~~Gl~~~~~~~~~~~-~~~~-------~--~~~~~~v~~i~-~d~---~g~--lwigt~-~Gl~ 472 (781)
T 3v9f_A 413 LKDSEGN-LWF--GTYLGNISYYNTRLKKFQ-IIEL-------E--KNELLDVRVFY-EDK---NKK--IWIGTH-AGVF 472 (781)
T ss_dssp EECTTSC-EEE--EETTEEEEEECSSSCEEE-ECCS-------T--TTCCCCEEEEE-ECT---TSE--EEEEET-TEEE
T ss_pred EECCCCC-EEE--EeccCCEEEEcCCCCcEE-Eecc-------C--CCCCCeEEEEE-ECC---CCC--EEEEEC-CceE
Confidence 4445665 444 333467899998776543 2321 0 01123456655 444 454 444544 4588
Q ss_pred EEEcCCCCcceeeeecc-----CCCeeEEEeecCCCce
Q 024245 235 VWDIRNPGIPLTAMKVH-----LEPGLECSMWRNPITM 267 (270)
Q Consensus 235 vwd~~~~~~~~~~~~~~-----~~~v~~~~~s~~g~~l 267 (270)
.||..+ ++........ ...|.++...++|.+.
T Consensus 473 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 509 (781)
T 3v9f_A 473 VIDLAS-KKVIHHYDTSNSQLLENFVRSIAQDSEGRFW 509 (781)
T ss_dssp EEESSS-SSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred EEeCCC-CeEEecccCcccccccceeEEEEEcCCCCEE
Confidence 899876 4432222111 3568888888877653
No 300
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.02 E-value=0.16 Score=39.29 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=19.4
Q ss_pred eEEEEEeeCCCCCEEEEEe------------CCCcEEEEEccC
Q 024245 65 IVSVATGPSIGLNKVISQG------------RDGTVKCWDIEN 95 (270)
Q Consensus 65 v~~~~~~~~~~~~~l~s~~------------~d~~i~~wd~~~ 95 (270)
...+.+.| +|..+++++ .+|.|.++|+.+
T Consensus 52 ~EDi~~~~--~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~ 92 (355)
T 3sre_A 52 SEDLEILP--NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNE 92 (355)
T ss_dssp CCEEEECT--TSEEEEEECCC-----------CCEEEEEETTS
T ss_pred cceeEEcC--CCeEEEEeccccCCCcccCCCCCCeEEEEecCC
Confidence 56777777 755544442 688899999874
No 301
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.93 E-value=0.36 Score=36.35 Aligned_cols=75 Identities=8% Similarity=0.045 Sum_probs=45.0
Q ss_pred ccEEEEEEeCCCCEEEEecCC-C-cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 19 ASVTDVCFHQTKPILFAGTTG-G-ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d-g-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
..+..+++.++|+++++.... + .|..+|..+++.......... .....++..+ ++..+++-..++.|..+|..++
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA-IFLNGITPLS--DTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTC-SCEEEEEESS--SSEEEEEETTTTEEEEEETTTT
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCc-cccCcccccC--CCcEEEEECCCCeEEEEeCCCC
Confidence 467889999999866654332 2 466777777765433322111 2234555555 5444555556888888887653
No 302
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.53 E-value=0.72 Score=36.87 Aligned_cols=72 Identities=7% Similarity=0.026 Sum_probs=48.6
Q ss_pred EEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEcc
Q 024245 21 VTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIE 94 (270)
Q Consensus 21 v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~ 94 (270)
...++++| +|.+.++-..++.|+.+|..++.....+........-..++|+| +++.|+ +-...+.|..+++.
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT--TSSEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC--CCCEEEEEeCCCCEEEEEeCC
Confidence 45688888 77766666677889999988776533332221112235799999 888554 55567789888876
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.42 E-value=0.16 Score=38.71 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=75.0
Q ss_pred cEEEEEE---eCCCCEEEEec-------------CCCcEEEEeCC---CCceeEEEeec--C---------CCcceEEEE
Q 024245 20 SVTDVCF---HQTKPILFAGT-------------TGGELRIWDTV---QHRTVSSSWVH--S---------AAHGIVSVA 69 (270)
Q Consensus 20 ~v~~~~~---s~~~~~l~s~~-------------~dg~i~vwd~~---~~~~~~~~~~~--~---------~~~~v~~~~ 69 (270)
.+..|.| .|+++++++.. .+..|..+|+. +++.+...... . .......++
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva 143 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA 143 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence 3589999 58887777533 26779999999 77776555421 1 112478999
Q ss_pred EeeCCCCCEEEEEeCC-CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc
Q 024245 70 TGPSIGLNKVISQGRD-GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS 148 (270)
Q Consensus 70 ~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (270)
..+ +|+.-++++.. +.|...+....... . +...... ....
T Consensus 144 vD~--~GnaYVt~s~~~~~I~rV~pdG~~~~-----~----------~~~~~~~----------------------~~~~ 184 (334)
T 2p9w_A 144 QDR--DGNSYVAFALGMPAIARVSADGKTVS-----T----------FAWESGN----------------------GGQR 184 (334)
T ss_dssp ECT--TSCEEEEEEESSCEEEEECTTSCCEE-----E----------EEECCCC----------------------SSSC
T ss_pred ECC--CCCEEEeCCCCCCeEEEEeCCCCEEe-----e----------eeecCCC----------------------cccc
Confidence 999 99998888877 77655554432110 0 0000000 0011
Q ss_pred CCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245 149 LCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (270)
Q Consensus 149 ~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~ 181 (270)
.+-..+++.|+|..|++ ..+ .+.+..+|+.+
T Consensus 185 ~G~nGIv~~pdg~~Liv-~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 185 PGYSGITFDPHSNKLIA-FGG-PRALTAFDVSK 215 (334)
T ss_dssp CSCSEEEEETTTTEEEE-ESS-SSSEEEEECSS
T ss_pred cCcceEEEeCCCCEEEE-EcC-CCeEEEEcCCC
Confidence 11222789999987776 455 79999999884
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.24 E-value=0.78 Score=35.53 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=45.8
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEe-ecCCCcceEEEEEeeCCC---CCEEEEEeC----C---
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSW-VHSAAHGIVSVATGPSIG---LNKVISQGR----D--- 85 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~-~~~~~~~v~~~~~~~~~~---~~~l~s~~~----d--- 85 (270)
-...+.|+|.|+|+++++ ..+|.|++++ .+++ .+..+. ..........|+++| + +..|+.+.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC--CCCcCCEEEEEEeccCCCCCc
Confidence 356789999999985555 5569999997 3454 222211 111124588999999 6 445543332 3
Q ss_pred -CcEEEEEccCC
Q 024245 86 -GTVKCWDIENG 96 (270)
Q Consensus 86 -~~i~~wd~~~~ 96 (270)
..|..|+....
T Consensus 104 ~~~v~r~~~~~~ 115 (354)
T 3a9g_A 104 RNRVIRGRLDGS 115 (354)
T ss_dssp EEEEEEEEECSS
T ss_pred ceEEEEEEECCC
Confidence 56777776543
No 305
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.03 E-value=1.6 Score=37.84 Aligned_cols=224 Identities=9% Similarity=-0.054 Sum_probs=108.6
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-------ecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
...|.++...++|. |..|+.++-|..++........... .......|.++...+ +++ |..|+.++-|..
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~-lWigt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QGK-LWIGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TSC-EEEEEBSSCEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CCC-EEEEeCCCcEEE
Confidence 46799999988886 5556656669999887654322110 010114588888877 655 555665566888
Q ss_pred EEccCCccCCCCccce-ecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC--CCCC---eEecCCCCeEE
Q 024245 91 WDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL--CDSK---DDVPAEGPKYM 164 (270)
Q Consensus 91 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~s~~~~~~~ 164 (270)
||..++.... .... ......+..+...................++..+++....... .... +...++|. +.
T Consensus 388 ~~~~~~~~~~--~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lw 464 (781)
T 3v9f_A 388 FENGKRVAIY--NKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IW 464 (781)
T ss_dssp EETTEEEEEC--C-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EE
T ss_pred EECCCCeEEE--ccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EE
Confidence 9887654321 1000 0011112222222222222221112223333333332221111 1111 44455564 55
Q ss_pred EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (270)
Q Consensus 165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 244 (270)
+.+ . +.|..||..+++....... .........+.++. ..+ +|. |..|+.++-|..||..+ ++
T Consensus 465 igt--~-~Gl~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~i~-~d~---~g~--lWigt~~~Gl~~~~~~~-~~- 526 (781)
T 3v9f_A 465 IGT--H-AGVFVIDLASKKVIHHYDT-------SNSQLLENFVRSIA-QDS---EGR--FWIGTFGGGVGIYTPDM-QL- 526 (781)
T ss_dssp EEE--T-TEEEEEESSSSSCCEEECT-------TTSSCSCSCEEEEE-ECT---TCC--EEEEESSSCEEEECTTC-CE-
T ss_pred EEE--C-CceEEEeCCCCeEEecccC-------cccccccceeEEEE-EcC---CCC--EEEEEcCCCEEEEeCCC-Ce-
Confidence 433 2 4588999887664432221 00001123456665 554 454 44455544477788765 33
Q ss_pred eeeeec----cCCCeeEEEeecCCCc
Q 024245 245 LTAMKV----HLEPGLECSMWRNPIT 266 (270)
Q Consensus 245 ~~~~~~----~~~~v~~~~~s~~g~~ 266 (270)
+..+.. ....|.++...++|.+
T Consensus 527 ~~~~~~~~~l~~~~i~~i~~d~~g~l 552 (781)
T 3v9f_A 527 VRKFNQYEGFCSNTINQIYRSSKGQM 552 (781)
T ss_dssp EEEECTTTTCSCSCEEEEEECTTSCE
T ss_pred EEEccCCCCCCCCeeEEEEECCCCCE
Confidence 222221 1346788888777764
No 306
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.18 Score=38.74 Aligned_cols=122 Identities=11% Similarity=0.100 Sum_probs=67.1
Q ss_pred CEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEe
Q 024245 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV 156 (270)
Q Consensus 77 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (270)
.+++.++.||.|.-.|..+|+... .++.. .....+.... + -
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W----~~~~~-~~~p~~~~~~-~---------------------------------~ 51 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIW----SIEPE-NFQPLIEIQE-P---------------------------------S 51 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEE----EECGG-GSCCSEECCC-S---------------------------------C
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE----EecCC-ccCCcEEecC-C---------------------------------c
Confidence 678889999999999999887643 22221 0000000000 0 0
Q ss_pred cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCC-------CCCceEEEEecC
Q 024245 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-------SQGFVNVLAGYE 229 (270)
Q Consensus 157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~-------~~g~~~l~~~~~ 229 (270)
.+.+..+++.....||.|..+|..+|.....+..+. - . ....+. .. =.|-- .++ .+++|+.
T Consensus 52 ~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~------l-v-~~SP~~-~~-~~pvv~~~~~~~~~g--~Vy~Gs~ 119 (339)
T 2be1_A 52 RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ------L-V-STSPLH-LK-TNIVVNDSGKIVEDE--KVYTGSM 119 (339)
T ss_dssp TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH------H-H-TTCSEE-EE-CC----------CCE--EEEECEE
T ss_pred cccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc------c-e-eccccc-cC-CCceeecccccccCC--EEEEEec
Confidence 011223444333468999999998886555444210 0 0 000000 00 00000 123 7899999
Q ss_pred CCcEEEEEcCCCCcceeeeec
Q 024245 230 DGSILVWDIRNPGIPLTAMKV 250 (270)
Q Consensus 230 dg~i~vwd~~~~~~~~~~~~~ 250 (270)
+|.+...|+++ ++.+..+..
T Consensus 120 ~g~l~ald~~t-G~~~W~~~~ 139 (339)
T 2be1_A 120 RTIMYTINMLN-GEIISAFGP 139 (339)
T ss_dssp EEEEEEEETTT-CCEEEEEST
T ss_pred CCEEEEEECCC-CcEEEEEec
Confidence 99999999999 888887763
No 307
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.62 E-value=2.3 Score=34.18 Aligned_cols=62 Identities=8% Similarity=0.048 Sum_probs=39.5
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE--Eeec----CCCcceEEEEEeeCCC---CCEEEE
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVH----SAAHGIVSVATGPSIG---LNKVIS 81 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~----~~~~~v~~~~~~~~~~---~~~l~s 81 (270)
-...+.|+|.|+|+++++-...+.|++++..+++.... +... ..+.....|+|+| + +..|..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~lYv 96 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPYIYI 96 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCEEEE
Confidence 34678999999999777755445788888655543222 2110 1225678999998 5 455543
No 308
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.45 E-value=2.5 Score=34.01 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=21.8
Q ss_pred cceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
.....|+|.| +|+++++-...+.|.+++..++
T Consensus 27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 27 NKPHALLWGP--DNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp SSEEEEEECT--TSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCC
Confidence 3468999999 9887666544446777765444
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=93.41 E-value=3.7 Score=36.56 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=34.3
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW 57 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 57 (270)
..+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357788888888899999999999999999999888764
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.19 E-value=2.2 Score=32.67 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=81.7
Q ss_pred CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEe
Q 024245 38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (270)
Q Consensus 38 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (270)
.+.+|.|-|+.++..+..-.... .+.-.+| ..+.++--. ..++.++|+++...++ ...+. ....-+.
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~A-----dsAIMnP--~~~ViALra-g~~LQiFnletK~klk--s~~~~---e~VvfWk 113 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISA-----DSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMK--AHTMT---DDVTFWK 113 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCC-----SEEEECS--SSSEEEEEE-TTEEEEEETTTTEEEE--EEECS---SCEEEEE
T ss_pred CCCEEEEEECCCCCCcccccccc-----ceeeeCC--CccEEEEec-CCeEEEechHHhhhhc--ceecC---CccEEEE
Confidence 34478899998865543332221 2344588 656655433 6789999999886544 11111 1111111
Q ss_pred eccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCC
Q 024245 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGS 196 (270)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~ 196 (270)
|-.+ +.+.+++ +..|+-|++.. ..+.+.+.
T Consensus 114 --------------------------------------Wis~-~~L~lVT---~taVyHWs~~~~s~P~kvFd------- 144 (365)
T 2xzh_A 114 --------------------------------------WISL-NTVALVT---DNAVYHWSMEGESQPVKMFD------- 144 (365)
T ss_dssp --------------------------------------ECSS-SEEEEEE---SSEEEEEESSTTCCCEEEEE-------
T ss_pred --------------------------------------ecCC-CeEEEEc---CCcEEEEcccCCCCCceeee-------
Confidence 2122 2344444 36899999974 45777777
Q ss_pred CCcccCCCceeeeeeecCCCCCCCceEEEEec------CCCcEEEEEcCCCCcceeeeeccCC
Q 024245 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY------EDGSILVWDIRNPGIPLTAMKVHLE 253 (270)
Q Consensus 197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~ 253 (270)
.|..-....+.... -++ +.+.++++|= -.|.+.+|..+. +.-+.++||..
T Consensus 145 -R~~~L~~~QIInY~-~d~---~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~ieGhaa 200 (365)
T 2xzh_A 145 -RHSSLAGCQIINYR-TDA---KQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAA 200 (365)
T ss_dssp -CCGGGTTCEEEEEE-ECT---TSCEEEEEEEEEETTEEEEEEEEEETTT--TEEEEECCSEE
T ss_pred -cchhcccceEEEEE-ECC---CCCEEEEEeEeccCCccceeEEEEeecc--cccceeeeeee
Confidence 45433334444444 444 4554455542 247789999884 45566666643
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.60 E-value=2.7 Score=32.19 Aligned_cols=212 Identities=13% Similarity=0.127 Sum_probs=107.5
Q ss_pred EeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccc
Q 024245 26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT 105 (270)
Q Consensus 26 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 105 (270)
.+|..+.+|--. ...++|+|+++.+.++.+... ..|.-=.|-. + +.|+-.+. ..|.-|+++... .|...
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis--~-~~L~lVT~-taVyHWs~~~~s---~P~kv 142 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS--L-NTVALVTD-NAVYHWSMEGES---QPVKM 142 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCEEEEEECS--S-SEEEEEES-SEEEEEESSTTC---CCEEE
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecC---CccEEEEecC--C-CeEEEEcC-CcEEEEcccCCC---CCcee
Confidence 477777777665 578999999999988888765 4477777765 4 56655543 479999997632 33333
Q ss_pred eecccc--eEEEEeeccCCccc-------eecCCCCceEEEec-cCceeeeccCCCCC--eEecCCC----CeEEEEe--
Q 024245 106 IKTNSY--HFCKLSLVKEPYAN-------AKQANEPKDCYERE-VGETVDTDSLCDSK--DDVPAEG----PKYMAVA-- 167 (270)
Q Consensus 106 ~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~s~~~----~~~~~~~-- 167 (270)
+..+.. ....+....+.... ....+...+...+. ..+.+...++||.. ..+-.+| ..+++.+
T Consensus 143 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 143 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred eecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 332211 12222222111111 00111111122221 12234445666665 3333332 2333221
Q ss_pred cCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245 168 GEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (270)
Q Consensus 168 ~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 246 (270)
+...+.++|.++... .-...+..+..... --.....+...++. .++. .| .+..-..-|.|++||+.+ +.++.
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~-fppea~~DFPVamq-vs~k--yg--viyviTK~G~ihlyDleT-gt~i~ 295 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPPEAQNDFPVAMQ-ISEK--HD--VVFLITKYGYIHLYDLET-GTCIY 295 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEEC-CCTTCTTCCEEEEE-EETT--TT--EEEEEETTSEEEEEETTT-CCEEE
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceee-CCccccCCceEEEE-eccc--CC--EEEEEeCCcEEEEEEccc-CcEEE
Confidence 222368888888543 11111110000000 00011344566666 6654 44 666667789999999999 77766
Q ss_pred eeeccCCCe
Q 024245 247 AMKVHLEPG 255 (270)
Q Consensus 247 ~~~~~~~~v 255 (270)
.-+-..++|
T Consensus 296 ~nrIS~d~i 304 (365)
T 2xzh_A 296 MNRISGETI 304 (365)
T ss_dssp EEECCSSCE
T ss_pred EeccCCCce
Confidence 554434444
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.51 E-value=2.5 Score=31.52 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=37.0
Q ss_pred CCCEEEEecCC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC-----cEEEEEccCCcc
Q 024245 29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGGL 98 (270)
Q Consensus 29 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~ 98 (270)
++.+++.|+.+ ..+.+||..+.+....-........ .+++. - ++..++.|+.++ .+.+||+.+.+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAV-L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-E--TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEE-E--CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 55666777654 3588899887654432221111111 12222 2 446677777553 577888887764
Q ss_pred C
Q 024245 99 S 99 (270)
Q Consensus 99 ~ 99 (270)
.
T Consensus 137 ~ 137 (302)
T 2xn4_A 137 F 137 (302)
T ss_dssp E
T ss_pred e
Confidence 3
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.44 E-value=2.5 Score=31.44 Aligned_cols=67 Identities=16% Similarity=0.073 Sum_probs=37.1
Q ss_pred CCCEEEEecCC-----CcEEEEeCCCCc---eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEccC
Q 024245 29 TKPILFAGTTG-----GELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIEN 95 (270)
Q Consensus 29 ~~~~l~s~~~d-----g~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~ 95 (270)
++.+++.|+.+ ..+.+||+.+.+ ....-........- ++.. - ++..++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~-~--~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT-L--GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE-E--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEE-E--CCEEEEEcccCCCcccceEEEEcCCC
Confidence 46677777754 468999988766 33322111111111 2222 2 44666666644 3588899887
Q ss_pred CccC
Q 024245 96 GGLS 99 (270)
Q Consensus 96 ~~~~ 99 (270)
.+..
T Consensus 138 ~~W~ 141 (301)
T 2vpj_A 138 DQWS 141 (301)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 7643
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.28 E-value=3.7 Score=32.90 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=82.8
Q ss_pred CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEe
Q 024245 38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (270)
Q Consensus 38 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (270)
.+.+|.|-|+.++..+..-... -.+.-.+| ..+.++-=. ..++.+||+++....+ ...+... ..+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP--~~~iiALra-g~~lQiFnle~K~klk--s~~~~e~-Vvf---- 110 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMK--AHTMTDD-VTF---- 110 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC-----CSEEEECS--SSSCEEEEE-TTEEEEEETTTTEEEE--EEECSSC-CCE----
T ss_pred CCCeEEEEECCCCCcceecccc-----cceeeeCC--CCcEEEEec-CCeEEEEchHHhhhhc--ceecCCC-ceE----
Confidence 3447899999886555333222 12455678 656555433 6799999999876544 1122111 111
Q ss_pred eccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCC
Q 024245 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGS 196 (270)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~ 196 (270)
|. |-.+ +.+-+++ +..|+-|++.. ..+.+.+.
T Consensus 111 ------------------Wk------------------Wis~-~~l~lVT---~taVyHWsi~~~s~P~kvFd------- 143 (494)
T 1bpo_A 111 ------------------WK------------------WISL-NTVALVT---DNAVYHWSMEGESQPVKMFD------- 143 (494)
T ss_dssp ------------------EE------------------EEET-TEEEEEC---SSEEEEEESSSSCCCEEEEE-------
T ss_pred ------------------EE------------------ecCC-CeEEEEc---CCeeEEecccCCCCchhhee-------
Confidence 11 1111 2344433 47899999974 45777777
Q ss_pred CCcccCCCceeeeeeecCCCCCCCceEEEEec------CCCcEEEEEcCCCCcceeeeeccCCC
Q 024245 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY------EDGSILVWDIRNPGIPLTAMKVHLEP 254 (270)
Q Consensus 197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~ 254 (270)
.|..-....+.... -++ +.+.++++|= -.|.+.+|..+. +.-+.+.||...
T Consensus 144 -R~~~L~~~QIInY~-~d~---~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~ieGhaa~ 200 (494)
T 1bpo_A 144 -RHSSLAGCQIINYR-TDA---KQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAAS 200 (494)
T ss_dssp -CCGGGTTCEEEEEE-ECT---TSSEEEEEEEEEETTEEEEEEEEEESTT--CCEEEECCSEEE
T ss_pred -cchhcccceEEEEE-ECC---CCCeEEEEeecccCCcccceEEEeeccc--cccchheeeeee
Confidence 45433334454444 454 4554454442 347889999884 455666666543
No 315
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.27 E-value=0.71 Score=35.48 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=42.5
Q ss_pred CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE--eCCCcEEEEEccCCc
Q 024245 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ--GRDGTVKCWDIENGG 97 (270)
Q Consensus 31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~ 97 (270)
.+++.++.||.|.-.|.++|+.+..+..... .++....-.....+..++.+ +.||.|..++..++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF-QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGS-CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence 3788899999999999999999988875410 22322211110012234433 589999999987763
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.20 E-value=3.2 Score=32.03 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=24.4
Q ss_pred cceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (270)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 96 (270)
.....|+|.| +|.++++--..|.|++++..++
T Consensus 32 ~~P~~ia~~p--dG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 32 NSPWGLAPLP--GGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp SSEEEEEECT--TSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcC--CCcEEEEEecCCEEEEEECCCC
Confidence 4478999999 9887776655888988876544
No 317
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.73 E-value=3.4 Score=31.39 Aligned_cols=69 Identities=9% Similarity=0.087 Sum_probs=41.9
Q ss_pred ccccEEEEEEeCCCCEEEEecCCCcEEEEeC--CCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
+...+..+.+.+++.+++.+...+..+-+|- .+.+.+. .... ..+..+.+.+ ++..+ .++.+|.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~--~~~~~~~~~~--~g~~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTS--RRLHNMGFTP--DGRLW-MIVNGGKIAFSD 231 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSS--SCEEEEEECT--TSCEE-EEETTTEEEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCC--CccceeEECC--CCCEE-EEeCCceEEEec
Confidence 3456888999999888877755443333442 2222221 1222 5588899988 76544 555678776664
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.48 E-value=3.9 Score=31.58 Aligned_cols=27 Identities=19% Similarity=0.049 Sum_probs=20.3
Q ss_pred cceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
.....|+|.| +|+ |+.+..+|.|.++|
T Consensus 29 ~~P~~ia~~p--dG~-l~V~e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLG--GGR-YLVTERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEE--TTE-EEEEETTTEEEEEC
T ss_pred CCCeEEEEcC--CCe-EEEEeCCCEEEEEe
Confidence 4478999999 877 44456668888886
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=91.46 E-value=3.5 Score=30.98 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=34.9
Q ss_pred CCCEEEEecCC--------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-C-----CcEEEEEcc
Q 024245 29 TKPILFAGTTG--------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-D-----GTVKCWDIE 94 (270)
Q Consensus 29 ~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d-----~~i~~wd~~ 94 (270)
++.+++.|+.+ ..+.+||..+.+....-........ .+++. - ++..++.|+. + ..+.+||+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~ 173 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-H--MDLVYVIGGKGSDRKCLNKMCVYDPK 173 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-E--TTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-E--CCEEEEEeCCCCCCcccceEEEEeCC
Confidence 45566666632 4588999887654332111111111 12222 3 4466667765 2 357788877
Q ss_pred CCcc
Q 024245 95 NGGL 98 (270)
Q Consensus 95 ~~~~ 98 (270)
+.+.
T Consensus 174 ~~~W 177 (315)
T 4asc_A 174 KFEW 177 (315)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7654
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=91.24 E-value=4.1 Score=31.39 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=20.4
Q ss_pred cceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (270)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 92 (270)
.....|+|.| +|.+++ +..++.|.+++
T Consensus 31 ~~P~~ia~~p--dG~l~V-~e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLP--DGGMLI-AERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECT--TSCEEE-EETTTEEEEEE
T ss_pred CCceEEEEcC--CCeEEE-EeCCCeEEEEE
Confidence 3368999999 987555 45668888887
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.22 E-value=3.6 Score=30.70 Aligned_cols=67 Identities=10% Similarity=0.168 Sum_probs=38.7
Q ss_pred CCCEEEEecCC----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC------CcEEEEEccCCcc
Q 024245 29 TKPILFAGTTG----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENGGL 98 (270)
Q Consensus 29 ~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~ 98 (270)
++.+++.|+.+ ..+.+||..+.+....-........- +++ .- ++.+++.|+.+ ..+.+||..+.+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AAC-AA--EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEE-EE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEE-EE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 56677777654 67889998877544332211111111 222 22 44666777765 4688999988764
Q ss_pred C
Q 024245 99 S 99 (270)
Q Consensus 99 ~ 99 (270)
.
T Consensus 131 ~ 131 (306)
T 3ii7_A 131 H 131 (306)
T ss_dssp E
T ss_pred E
Confidence 3
No 322
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.65 E-value=4.7 Score=31.07 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=21.3
Q ss_pred ceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 64 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
....|+|.| +|+.|+.+...|.|++++.
T Consensus 19 ~P~~i~~~p--dG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 19 HPWALAFLP--DNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SEEEEEECS--TTCCEEEEETTTEEEEEET
T ss_pred CcEEEEEcC--CCCEEEEEeCCceEEEEeC
Confidence 368999999 9883445566788888874
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=89.61 E-value=5.2 Score=29.93 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=34.5
Q ss_pred CCCEEEEecC----C-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEcc
Q 024245 29 TKPILFAGTT----G-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIE 94 (270)
Q Consensus 29 ~~~~l~s~~~----d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~ 94 (270)
++.+++.|+. + ..+.+||+.+.+....-........-..+. - ++..++.|+.+ ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--I--DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--E--TTEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--E--CCEEEEEcCCCCCcccccEEEECCC
Confidence 5666677765 2 468889988765443221111111112222 2 44666666543 357777777
Q ss_pred CCcc
Q 024245 95 NGGL 98 (270)
Q Consensus 95 ~~~~ 98 (270)
+.+.
T Consensus 146 ~~~W 149 (308)
T 1zgk_A 146 RDEW 149 (308)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 6654
No 324
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=89.47 E-value=12 Score=34.12 Aligned_cols=64 Identities=8% Similarity=-0.045 Sum_probs=41.7
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCC----CCEEEEEeC-CCcEEEEEccCCc
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG----LNKVISQGR-DGTVKCWDIENGG 97 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~-d~~i~~wd~~~~~ 97 (270)
+++.++ .+.+.++++..++... .....-+..|.|+++.|..+ +.+++.|.. |++++++++.+.+
T Consensus 525 ~vvva~-g~~l~~fel~~~~L~~-~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 525 QVVVAV-GRALYYLQIHPQELRQ-ISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEE-EEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEE-CCEEEEEEeeCCceee-ecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 455554 5678888877654322 21111125599999986322 368888986 9999999998643
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=89.30 E-value=7.3 Score=31.25 Aligned_cols=211 Identities=14% Similarity=0.146 Sum_probs=108.1
Q ss_pred EEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCcc
Q 024245 25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSL 104 (270)
Q Consensus 25 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 104 (270)
-.+|..+.+|--. ..++.|+|+++.+.++.+... ..|.-=.|-. + +.|+-.+ +..|.-|++.... .|..
T Consensus 72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis--~-~~l~lVT-~taVyHWsi~~~s---~P~k 140 (494)
T 1bpo_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS--L-NTVALVT-DNAVYHWSMEGES---QPVK 140 (494)
T ss_dssp EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEE--T-TEEEEEC-SSEEEEEESSSSC---CCEE
T ss_pred eeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecC--C-CeEEEEc-CCeeEEecccCCC---Cchh
Confidence 3467677676654 578999999999888888765 4477777876 5 6666555 3479999997632 3333
Q ss_pred ceecccc--eEEEEeeccCCccc----e---ecCC---CCceEEEeccCceeeeccCCCCC--eEecCCC----CeEEEE
Q 024245 105 TIKTNSY--HFCKLSLVKEPYAN----A---KQAN---EPKDCYEREVGETVDTDSLCDSK--DDVPAEG----PKYMAV 166 (270)
Q Consensus 105 ~~~~~~~--~~~~~~~~~~~~~~----~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~----~~~~~~ 166 (270)
.+..+.. ....+....+.... . ...+ +...+|..+ +.+...++||.. ..+-.+| ..+++.
T Consensus 141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f 218 (494)
T 1bpo_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCF 218 (494)
T ss_dssp EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCCEEEECCSEEEEEEEECTTCSSEEEEEEE
T ss_pred heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccccchheeeeeeeEEEecCCCCCCceEEEE
Confidence 3332211 11222222111110 0 0011 111222222 233445566665 3333332 223322
Q ss_pred e--cCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245 167 A--GEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (270)
Q Consensus 167 ~--~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 243 (270)
+ ....+.++|.++... .....+..+..... --.....+...++. .++. .| .+..-..-|.|++||+.+ +.
T Consensus 219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~-fppe~~~DFPvamq-vs~k--yg--viyviTK~G~i~lyDleT-gt 291 (494)
T 1bpo_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPPEAQNDFPVAMQ-ISEK--HD--VVFLITKYGYIHLYDLET-GT 291 (494)
T ss_dssp EECSTTCCEEEEEECSCCCTTCCCCCCEEEECC-CCTTSTTCCEEEEE-EETT--TT--EEEEEETTSEEEEEETTT-CC
T ss_pred EEecCCCcEEEEEEcCCCccCCCCccceeeeee-CCcccccCceeEEE-eccc--CC--EEEEEecCceEEEEeccc-ce
Confidence 1 112378888888543 10011110000000 00012345566666 6664 44 666777889999999999 77
Q ss_pred ceeeeeccCCCe
Q 024245 244 PLTAMKVHLEPG 255 (270)
Q Consensus 244 ~~~~~~~~~~~v 255 (270)
++..-+-..++|
T Consensus 292 ~i~~nrIs~~~i 303 (494)
T 1bpo_A 292 CIYMNRISGETI 303 (494)
T ss_dssp EEEEEECCSSCE
T ss_pred eeeeecccCCce
Confidence 665544333333
No 326
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.05 E-value=6.5 Score=30.31 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=49.7
Q ss_pred cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE--Ee--ecCCCcceEEEEEeeCCC---CCEEE-EE--e
Q 024245 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SW--VHSAAHGIVSVATGPSIG---LNKVI-SQ--G 83 (270)
Q Consensus 14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~--~~~~~~~v~~~~~~~~~~---~~~l~-s~--~ 83 (270)
+-.--...+.|+|.|+|+++++--..|.|++++...++.... +. ..........|+++| + ...|+ +- .
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P--df~~~g~lYv~yt~~ 104 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP--DYASDHMVYAYFTSA 104 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT--THHHHCEEEEEEECS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc--ccccCCEEEEEEecC
Confidence 333345678999999999887766589999998765543221 11 011225689999998 4 23343 32 2
Q ss_pred CCCcEEEEEccC
Q 024245 84 RDGTVKCWDIEN 95 (270)
Q Consensus 84 ~d~~i~~wd~~~ 95 (270)
.++.|.-|.+..
T Consensus 105 ~~~~v~R~~~~~ 116 (347)
T 3das_A 105 SDNRIVRMLYDE 116 (347)
T ss_dssp SSEEEEEEEBCT
T ss_pred CCCEEEEEEeCC
Confidence 345566666654
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=88.94 E-value=6 Score=29.74 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=33.8
Q ss_pred CCCEEEEecCC-------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC------CCcEEEEEccC
Q 024245 29 TKPILFAGTTG-------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------DGTVKCWDIEN 95 (270)
Q Consensus 29 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~ 95 (270)
++.+++.|+.+ ..+.+||..+.+....-........ .+++. . ++.+++.|+. -..+.+||+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-H--NGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-E--TTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-E--CCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 45566666653 3578888877654432111110011 12222 3 5466666654 23577888877
Q ss_pred Ccc
Q 024245 96 GGL 98 (270)
Q Consensus 96 ~~~ 98 (270)
.+.
T Consensus 185 ~~W 187 (318)
T 2woz_A 185 GDW 187 (318)
T ss_dssp TEE
T ss_pred CEE
Confidence 654
No 328
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.67 E-value=4.2 Score=33.67 Aligned_cols=78 Identities=10% Similarity=0.158 Sum_probs=47.5
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcceee--ee-ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT--RL-HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~-~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d 230 (270)
+.++|||+++++ +|--+.++.++|.+.-.... .+ .... ...+... ..--.+..+ |.+ +|. ...+-.-|
T Consensus 328 v~vsPDGkyi~v-~GKLsptvtV~d~~k~~~~~~~k~~~~~~--~~~ae~e-~GlGPlHt~-Fd~---~G~-aYTtlfid 398 (638)
T 3sbq_A 328 CNTSSDGKYFIA-AGKLSPTCSMIAIDKLPDLFAGKLADPRD--VIVGEPE-LGLGPLHTT-FDG---RGN-AYTTLFID 398 (638)
T ss_dssp EEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHHTTCCSCGGG--GEEECCB-CCSCEEEEE-ECS---SSE-EEEEETTT
T ss_pred eeeCCCCCEEEE-cCCCCCeEEEEEeehhhhhhhccccCccc--ceEeecc-CCCcccEEE-ECC---CCc-eEeeeeec
Confidence 899999998876 67778999999988432100 00 0000 0000000 111234455 887 453 77777899
Q ss_pred CcEEEEEcCC
Q 024245 231 GSILVWDIRN 240 (270)
Q Consensus 231 g~i~vwd~~~ 240 (270)
..|.-|++..
T Consensus 399 SqvvkWni~~ 408 (638)
T 3sbq_A 399 SQVVKWNMEE 408 (638)
T ss_dssp TEEEEEEHHH
T ss_pred ceEEEEeccH
Confidence 9999999875
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=88.54 E-value=6.3 Score=29.48 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=34.7
Q ss_pred CCCEEEEecCC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEccCCcc
Q 024245 29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGGL 98 (270)
Q Consensus 29 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~ 98 (270)
++++++.|+.+ ..+.+||..+.+....-........- +++.. ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 56666666643 35888998876544322111111111 22222 43666666654 3577778776654
No 330
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=87.41 E-value=7.9 Score=29.36 Aligned_cols=63 Identities=8% Similarity=-0.052 Sum_probs=34.9
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE-eecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i 88 (270)
..+..+.+.+++..++.+. +|.|.. ....++.-... .... ..+..+.+.+ ++.+++.+. +|.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~--~~~~~~~~~~--~~~~~~~g~-~G~~ 185 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAI--GVMRNLNRSP--SGEYVAVSS-RGSF 185 (327)
T ss_dssp SCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCC--CCEEEEEECT--TSCEEEEET-TSSE
T ss_pred CCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCC--cceEEEEEcC--CCcEEEEEC-CCcE
Confidence 3467788777776666654 554422 12223322222 2222 4588999988 766666554 4443
No 331
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=87.26 E-value=11 Score=32.18 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.6
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccCC
Q 024245 75 GLNKVISQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 75 ~~~~l~s~~~d~~i~~wd~~~~~~~~ 100 (270)
+..++++.+.|+++|+|++.+++++.
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~ 255 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQ 255 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEE
Confidence 44899999999999999999987644
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=87.17 E-value=20 Score=33.72 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=42.2
Q ss_pred EeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 26 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
.+|..+.+|--. ..++.|+|+++.+.++.+... ..|.-=.|-. + +.|+-.+ +..|.-|++..
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~---e~VvfWkWis--~-~~l~lVT-~~aVyHW~~~~ 134 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS--L-NTVALVT-DNAVYHWSMEG 134 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccC---CCceEEEecC--C-CeeEEEc-CCeEEEeccCC
Confidence 356666666554 578999999988877776654 4466666755 4 5555444 34699999965
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.60 E-value=1.5 Score=31.49 Aligned_cols=91 Identities=7% Similarity=-0.083 Sum_probs=48.0
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCcce------eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~ 227 (270)
++|+|+|. |+++ .+|.+.-.+..+... -..+- ... -..-.++. |.| +|. +.++
T Consensus 46 laf~P~G~-LYaV---~~G~Ly~~~~~t~~~~~W~~s~t~IG---------~~G--w~~F~a~~-fD~---~G~-LYav- 104 (236)
T 1tl2_A 46 LFLSPGGE-LYGV---LNDKIYKGTPPTHDNDNWMGRAKKIG---------NGG--WNQFQFLF-FDP---NGY-LYAV- 104 (236)
T ss_dssp EEECTTSC-EEEE---ETTEEEEESCCCSTTCCHHHHCEEEE---------CSC--GGGCSEEE-ECT---TSC-EEEE-
T ss_pred EEECCCcc-EEEE---eCCeEEEECCCCCCcccccccccEec---------ccc--cccceEEE-ECC---CCC-EEEe-
Confidence 78999886 5554 357777777654221 11111 000 11123454 887 464 3333
Q ss_pred cCCCcEEEEEcCCCCccee-----eeecc-CCCeeEEEeecCCCc
Q 024245 228 YEDGSILVWDIRNPGIPLT-----AMKVH-LEPGLECSMWRNPIT 266 (270)
Q Consensus 228 ~~dg~i~vwd~~~~~~~~~-----~~~~~-~~~v~~~~~s~~g~~ 266 (270)
.||.|+-++-.+.+.--. .+-.. =..+..|.|.|+|.+
T Consensus 105 -~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L 148 (236)
T 1tl2_A 105 -SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL 148 (236)
T ss_dssp -ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE
T ss_pred -CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE
Confidence 569998887644222111 11100 035788899998865
No 334
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.48 E-value=6 Score=35.27 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=29.1
Q ss_pred ceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 64 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 100 (270)
.+.+++..+ +..++++.+.|+++|+|++.+++++.
T Consensus 237 ~~~~~~~~~--~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 237 TIISMIFLS--TYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp CEEEEEEET--TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEEeecC--CCcEEEEEECCCEEEEEECCCCCeEe
Confidence 466777777 77899999999999999999987643
No 335
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.20 E-value=14 Score=34.56 Aligned_cols=136 Identities=9% Similarity=0.027 Sum_probs=77.7
Q ss_pred CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEee
Q 024245 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL 118 (270)
Q Consensus 39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (270)
..+|.|-|+.++..+..-+.. --+.-.+| ..+.++- -...++.+||+++....+ ...+... ..-+.+
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP--~~~iiAL-rag~~lQiFnl~~k~klk--s~~~~e~---VvfWkW 113 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNP--ASKVIAL-KAGKTLQIFNIEMKSKMK--AHTMTDD---VTFWKW 113 (1630)
T ss_pred CceEEEEECCCCCCccccccc-----chhhccCC--CcceEEE-ecCCeEEEeehHHhhhhc--ccccCCC---ceEEEe
Confidence 347888888876544222111 12344677 6455543 346789999999876654 2222221 111222
Q ss_pred ccCCccceecCCCCceEEEeccCceeeeccCCCCC--------eEecCCCCeEEEEe-----cCCCceEEEEeCCCccee
Q 024245 119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--------DDVPAEGPKYMAVA-----GEQLSEVEIWDLNTAERC 185 (270)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~~~~~~~-----~~~d~~i~iwd~~~~~~~ 185 (270)
. ++....+.+...+..|++.....+...+..|.. ...+++.+.++++. +.-.|.+.+|... .+..
T Consensus 114 i-s~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~s 191 (1630)
T 1xi4_A 114 I-SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVS 191 (1630)
T ss_pred c-CCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-cccc
Confidence 2 344556677788888999766556555555544 45567777665432 1235788888876 3334
Q ss_pred eeec
Q 024245 186 TRLH 189 (270)
Q Consensus 186 ~~~~ 189 (270)
+.++
T Consensus 192 Q~ie 195 (1630)
T 1xi4_A 192 QPIE 195 (1630)
T ss_pred hhhh
Confidence 4455
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=85.79 E-value=9.5 Score=28.69 Aligned_cols=31 Identities=3% Similarity=-0.019 Sum_probs=21.8
Q ss_pred eEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 185 (270)
..++|+++.++.+.. ....|.+.++..+...
T Consensus 150 ~~~~~~g~~iy~t~~-g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 150 FTCNTSDRYFYYNNP-KNGQLYRYDTASQSEA 180 (302)
T ss_dssp CCSEEETTEEEEECT-TTCCEEEEETTTTEEE
T ss_pred eEeeEECCEEEEEeC-CCceEEEEECCCCCEE
Confidence 567889998876433 4678888888755543
No 337
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.46 E-value=13 Score=29.98 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=33.6
Q ss_pred ccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCc---eeEEEe---ec----CCCcceEEEEEee
Q 024245 19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR---TVSSSW---VH----SAAHGIVSVATGP 72 (270)
Q Consensus 19 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~---~~~~~~---~~----~~~~~v~~~~~~~ 72 (270)
..-+.|+|.|+|. .|+.+...|.|++++..... .+..+. .. ..+.....|+|+|
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P 78 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP 78 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC
Confidence 4568999999986 44455678999999754321 222111 10 1125688999998
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.77 E-value=2.1 Score=30.69 Aligned_cols=69 Identities=3% Similarity=-0.141 Sum_probs=42.4
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee-----EEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 93 (270)
..+..++|+|+|.+.+. .+|.+.-.+..+.... .+.-+...-..-.++.|.| +|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~--~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP--NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT--TSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC--CCCEEEe--CCCEEEEeCC
Confidence 46779999999986665 6777766665442111 1111111112247889999 8776666 5688876664
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.57 E-value=13 Score=28.54 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=33.9
Q ss_pred cccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEee-----cCCCcceEEEEEee
Q 024245 18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWV-----HSAAHGIVSVATGP 72 (270)
Q Consensus 18 ~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~ 72 (270)
-...+.|+|.|+|+ +++ +...|.|++++.. +.....+.. .........|+++|
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~p 75 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAP 75 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECT
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECC
Confidence 45678999999998 555 4567899999853 332111110 11124578999998
No 340
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=83.04 E-value=12 Score=27.67 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=35.9
Q ss_pred CCCEEEEec-CC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEccCCc
Q 024245 29 TKPILFAGT-TG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGG 97 (270)
Q Consensus 29 ~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~ 97 (270)
++.+++.|+ .+ ..+.+||+.+.+....-........ .++. .- ++..++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASV-SL--HDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EE--TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEE-EE--CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 345666666 32 4688999887654432111111011 1222 23 44667777754 368899998876
No 341
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.85 E-value=1.4 Score=40.12 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=32.3
Q ss_pred cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe
Q 024245 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW 57 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 57 (270)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677788899999999999999999999988764
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=81.07 E-value=16 Score=27.81 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=28.4
Q ss_pred CCCEEEEecC-C---------CcEEEEeCCCCceeEEEeec-CCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 29 TKPILFAGTT-G---------GELRIWDTVQHRTVSSSWVH-SAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 29 ~~~~l~s~~~-d---------g~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
++.+++.|+. + ..+.+||+.+.+....-... .....- ++.. . ++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~-~~~~-~--~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGH-VTFV-H--NGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSE-EEEE-E--TTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccc-eEEE-E--CCEEEEEeCcC
Confidence 5666666765 2 46889999876544322211 111111 2222 4 55777777754
No 343
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=80.74 E-value=9.6 Score=31.84 Aligned_cols=60 Identities=7% Similarity=0.035 Sum_probs=42.3
Q ss_pred cEEEEEEeCCCCEEEEecCC------------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 20 SVTDVCFHQTKPILFAGTTG------------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
..--|.|+|.|.+++.-..+ ..+.+.+..+++..+.+.+... ..++.++|+| +++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g-aE~TG~~fsp--Dg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG-CEVTGISFSP--DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT-CEEEEEEECT--TSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC-ccCcCeeECC--CCCEEEEE
Confidence 34678999999877664322 2456666677777766666543 6799999999 88877654
No 344
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=80.09 E-value=3.7 Score=35.04 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=31.3
Q ss_pred ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEee
Q 024245 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV 58 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 58 (270)
..|.++.+ +..++++-+.|.++|+|++++++++.+...
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35666655 467999999999999999999998887765
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=78.99 E-value=11 Score=31.35 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=50.9
Q ss_pred cEEEEEEeCCCCEEEEe-cCCCcEEEEeCCCC------ce-------eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 20 SVTDVCFHQTKPILFAG-TTGGELRIWDTVQH------RT-------VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 20 ~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~------~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
....+.++|||++++.+ --+.++.|+|+++- +. ....... -.....+|.+ +|+...|.-.|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G---lGPlHt~Fd~--~G~aYTtlfid 398 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG---LGPLHTTFDG--RGNAYTTLFID 398 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC---SCEEEEEECS--SSEEEEEETTT
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC---CcccEEEECC--CCceEeeeeec
Confidence 44578899999987665 45789999998741 11 2222222 3467899999 88656677789
Q ss_pred CcEEEEEccC
Q 024245 86 GTVKCWDIEN 95 (270)
Q Consensus 86 ~~i~~wd~~~ 95 (270)
..|.-|++..
T Consensus 399 SqvvkWni~~ 408 (638)
T 3sbq_A 399 SQVVKWNMEE 408 (638)
T ss_dssp TEEEEEEHHH
T ss_pred ceEEEEeccH
Confidence 9999999975
No 346
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=76.46 E-value=21 Score=26.42 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=34.7
Q ss_pred CCEEEEecCC----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEccCCccC
Q 024245 30 KPILFAGTTG----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGGLS 99 (270)
Q Consensus 30 ~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~ 99 (270)
+.+++.|+.+ ..+.+||+.+.+....-....... -.+++. - ++..++.|+.+ ..+.+||..+.+..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC-RAGMVY-M--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEE-E--TTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc-cceEEE-E--CCEEEEEeCcCCCccccceEEECCCCCcee
Confidence 3455555543 468899988765433211111101 112222 2 44666677654 35888998877643
No 347
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=75.95 E-value=22 Score=26.54 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=33.5
Q ss_pred CCCCEEEEecC----CC-------cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-------CcEE
Q 024245 28 QTKPILFAGTT----GG-------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-------GTVK 89 (270)
Q Consensus 28 ~~~~~l~s~~~----dg-------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------~~i~ 89 (270)
.++.+++.|+. ++ .+.+||..+.+....-....... -.+++.. ++..++.|+.+ ..+.
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC-LFGLGEV---DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC-SCEEEEE---TTEEEEEEEEBTTTCCEEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc-ccceEEE---CCEEEEEcCccCCCCcccceEE
Confidence 46677777773 12 17788887765443211111101 1122222 44666666653 2466
Q ss_pred EEEccCCcc
Q 024245 90 CWDIENGGL 98 (270)
Q Consensus 90 ~wd~~~~~~ 98 (270)
+||+.+.+.
T Consensus 131 ~yd~~~~~W 139 (318)
T 2woz_A 131 CYDPVAAKW 139 (318)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCCE
Confidence 777776654
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=74.55 E-value=27 Score=28.19 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=18.4
Q ss_pred eEecCCCC-eEEEEecCCCceEEEEeCC
Q 024245 154 DDVPAEGP-KYMAVAGEQLSEVEIWDLN 180 (270)
Q Consensus 154 ~~~s~~~~-~~~~~~~~~d~~i~iwd~~ 180 (270)
++|.|+|. +++++ ...|.|++++..
T Consensus 19 ~a~~pdG~~rl~V~--er~G~i~~~~~~ 44 (463)
T 2wg3_C 19 ALHSGDGSQRLFIL--EKEGYVKILTPE 44 (463)
T ss_dssp EECCSSSSCCEEEE--ETTTEEEEECTT
T ss_pred EEECCCCCeEEEEE--eCCceEEEEeCC
Confidence 77899996 56653 357999999754
No 349
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=73.98 E-value=30 Score=28.86 Aligned_cols=61 Identities=7% Similarity=0.034 Sum_probs=41.7
Q ss_pred ccEEEEEEeCCCCEEEEecC------------CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245 19 ASVTDVCFHQTKPILFAGTT------------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (270)
.....|.|.++|.+.+.... ...|..++..+++....+..... ..++.++|+| |++.|+..
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~-aEpnGiafSP--D~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG-CEVTGISFSP--DQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT-CEEEEEEECT--TSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC-ccccCCEECC--CCCEEEEE
Confidence 45788999999987763221 12566667767776665543322 4589999999 98887755
No 350
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=69.31 E-value=16 Score=30.23 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=43.1
Q ss_pred cEEEEEEeCCC--CEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceE-EEEEeeCCCCCEEEEEeCCCcEE
Q 024245 20 SVTDVCFHQTK--PILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQGRDGTVK 89 (270)
Q Consensus 20 ~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~d~~i~ 89 (270)
..++++....+ ..++.|..+|.|.-..+... ..+..+.......+|. .|.+++ ++..|+.++.++.++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~--~~~~Lyv~s~~~V~k 475 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSI--NQLYLYVMSERQVTR 475 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECT--TSSEEEEECSSEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEcc--CCCeEEEEeccccce
Confidence 46667666533 36778999998876655432 1233333322125685 899998 878898888775443
No 351
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=69.29 E-value=39 Score=26.45 Aligned_cols=84 Identities=7% Similarity=0.068 Sum_probs=48.3
Q ss_pred ceEEEEeCCCc--ceeeeeccCcCCCCCCcccCCCceeeeeeecC---CC-CCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245 172 SEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL---PS-KSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (270)
Q Consensus 172 ~~i~iwd~~~~--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~---p~-~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 245 (270)
-.|.+||+.++ +.++++..+. ...........+. +. |. ..++.+..++=+..+-|.|+|+.+ ++..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~------~~~~~~S~l~di~-VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~-~~sw 194 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPT------RLVEKPTYFGGFA-VDVANPKGDCSETFVYITNFLRGALFIYDHKK-QDSW 194 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCG------GGCCCGGGEEEEE-EEESCTTTTSCSEEEEEEETTTTEEEEEETTT-TEEE
T ss_pred ceEEEEECCCCCceeEEEEECCH------HhcccCCccceEE-EecccCCCCCCccEEEEEcCCCCcEEEEECCC-CcEE
Confidence 47889999998 8888776421 1111223344444 44 21 112332445555677899999998 5433
Q ss_pred eeee--------------cc----CCCeeEEEeecC
Q 024245 246 TAMK--------------VH----LEPGLECSMWRN 263 (270)
Q Consensus 246 ~~~~--------------~~----~~~v~~~~~s~~ 263 (270)
+.+. +. ...|..|++||+
T Consensus 195 Rv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 195 NVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp EEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred EEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence 3331 10 136788888887
No 352
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.99 E-value=2.8 Score=38.14 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=28.0
Q ss_pred ceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 64 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 100 (270)
.+.+++..+ +..++++.+.|+++|+|++.++.++.
T Consensus 239 ~~vs~~~~~--~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 239 TIISMIFLS--TYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp CBSCCEEET--TTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred eeEEeeccC--CccEEEEEeCCCEEEEEECCCCCeEE
Confidence 345556666 66899999999999999999987644
No 353
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=68.46 E-value=55 Score=27.88 Aligned_cols=69 Identities=12% Similarity=0.195 Sum_probs=41.7
Q ss_pred cEEEEEEe----CCCC--EEEEecCCCcEE-EEeCCCCc-------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 20 SVTDVCFH----QTKP--ILFAGTTGGELR-IWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 20 ~v~~~~~s----~~~~--~l~s~~~dg~i~-vwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
..+.++.. ++|+ .++.|..+|.|. +.....+. .+..+.......+|..|.+++ +.+.|+.++.+
T Consensus 413 ~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~--~~~~LYV~t~~ 490 (667)
T 4gz8_A 413 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELST--KQQQLYIGSTA 490 (667)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEET--TTTEEEEEBSS
T ss_pred ceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcC--CCCEEEEEECC
Confidence 34555553 3443 677899999875 33222211 233333333336799999999 88999999988
Q ss_pred CcEEE
Q 024245 86 GTVKC 90 (270)
Q Consensus 86 ~~i~~ 90 (270)
+.++|
T Consensus 491 ~V~kV 495 (667)
T 4gz8_A 491 GVAQL 495 (667)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 75544
No 354
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=67.34 E-value=43 Score=27.29 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=42.8
Q ss_pred cEEEEEEeC----CCC--EEEEecCCCcEEEEeCC-CC-------ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245 20 SVTDVCFHQ----TKP--ILFAGTTGGELRIWDTV-QH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (270)
Q Consensus 20 ~v~~~~~s~----~~~--~l~s~~~dg~i~vwd~~-~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (270)
..+.|+... ++. .++.|..+|.|.-.-+. .+ ..+..+.......+|..|.+++ +...|+.++.+
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~--~~~~Lyv~s~~ 482 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELST--KQQQLYIGSTA 482 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEET--TTTEEEEEBSS
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcC--CCCEEEEEECC
Confidence 467766653 243 57788999987544332 21 1233343322226799999999 88899999888
Q ss_pred CcEEE
Q 024245 86 GTVKC 90 (270)
Q Consensus 86 ~~i~~ 90 (270)
+.++|
T Consensus 483 ~V~~v 487 (495)
T 1q47_A 483 GVAQL 487 (495)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 75554
No 355
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=65.36 E-value=65 Score=27.55 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=38.9
Q ss_pred CCCCEEEEecCC----CcEEEEeCCCCceeEEE-e-----ecCCCcceEEEEEeeCCCCCEEEEEeCC------CcEEEE
Q 024245 28 QTKPILFAGTTG----GELRIWDTVQHRTVSSS-W-----VHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCW 91 (270)
Q Consensus 28 ~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~-~-----~~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~w 91 (270)
.++.+++.|+.+ ..+.+||..+++....- . .......-..+.+.. ++..++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEEEE
Confidence 456677777753 46889998877554332 1 111111122333321 33566666643 257888
Q ss_pred EccCCccCC
Q 024245 92 DIENGGLSS 100 (270)
Q Consensus 92 d~~~~~~~~ 100 (270)
|..+.+...
T Consensus 474 d~~t~~W~~ 482 (695)
T 2zwa_A 474 DMKTREWSM 482 (695)
T ss_dssp ETTTTEEEE
T ss_pred eCCCCcEEE
Confidence 988876543
No 356
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=62.48 E-value=44 Score=24.64 Aligned_cols=63 Identities=8% Similarity=0.005 Sum_probs=33.3
Q ss_pred EEEEecC--CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC----CcEEEEEccCCcc
Q 024245 32 ILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----GTVKCWDIENGGL 98 (270)
Q Consensus 32 ~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~ 98 (270)
+++.|+. ...+.+||..+++....-........-..+. - ++..++.|+.+ ..+.+||+.+++.
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W 82 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W--DNVVYILGGSQLFPIKRMDCYNVVKDSW 82 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E--TTEEEEECCBSSSBCCEEEEEETTTTEE
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E--CCEEEEEeCCCCCCcceEEEEeCCCCeE
Confidence 4555554 3578999998775443211111111112222 2 44666677654 4677778776643
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=58.36 E-value=28 Score=29.04 Aligned_cols=57 Identities=14% Similarity=-0.026 Sum_probs=34.5
Q ss_pred eeeeeeecCCCCCCCceEEEEecC-----------CCcEEEEEcCCCCcceeeeecc-CCCeeEEEeecCCCce
Q 024245 206 MCMAVQAYLPSKSQGFVNVLAGYE-----------DGSILVWDIRNPGIPLTAMKVH-LEPGLECSMWRNPITM 267 (270)
Q Consensus 206 ~~~~~~~~~p~~~~g~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l 267 (270)
..-.+. |.+ +|.++|.+=.. ...|..++..+ ++....+.+. ...++.++|+||++.|
T Consensus 477 sPDnL~-fd~---~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~aEpnGiafSPD~ktL 545 (592)
T 4a9v_A 477 SPDGLG-FDK---AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGCEVTGISFSPDQKTL 545 (592)
T ss_dssp CEEEEE-ECT---TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTCEEEEEEECTTSSEE
T ss_pred CCCceE-ECC---CCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCccccCCEECCCCCEE
Confidence 344565 877 46644434321 12566666655 5655555443 3568999999999875
No 358
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=50.32 E-value=55 Score=26.94 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=42.8
Q ss_pred cEEEEEEeC-CC-CEEEEecCCCcEEEEeCC-CC--ceeEEEeecCCCcce-EEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 20 SVTDVCFHQ-TK-PILFAGTTGGELRIWDTV-QH--RTVSSSWVHSAAHGI-VSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 20 ~v~~~~~s~-~~-~~l~s~~~dg~i~vwd~~-~~--~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
..+.|+... ++ ..++.|+.+|.|.-.-+. ++ ..+..+.... ..+| ..|.+++ +...|+.++.++.+++
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~-~~pi~~~l~l~~--~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQ-GSAVSRDLTFDG--TFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESST-TSCCCSCCEECT--TSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCC-CCcceeeEEEec--CCCEEEEEeCCEEEEE
Confidence 467777655 23 366778899988754443 22 2333444322 2567 4899988 7788888888775554
No 359
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=49.70 E-value=1.2e+02 Score=25.93 Aligned_cols=72 Identities=10% Similarity=0.152 Sum_probs=44.8
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEee--cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 95 (270)
...|+++.-..+| +|-.|..+| +..||-.+- ..+.. ......|.++.... + ..|..++.+| +..||..+
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~---~~~~~~~~~~~~~i~~i~~d~--~-g~lWigT~~G-l~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYST---QQHFTYGENNNTRIYCGVIID--N-TYLYMGTDNG-ILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCE---EECSCTTSTTSSCEEEEEEET--T-TEEEEEETTE-EEEEETTT
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCce---EEEEccCCCCCceEEEEEEcC--C-CcEEEEeCCC-eEEEeCCC
Confidence 4679999988887 455566777 677774321 12211 11114588887666 6 4566666665 78899887
Q ss_pred Ccc
Q 024245 96 GGL 98 (270)
Q Consensus 96 ~~~ 98 (270)
.+.
T Consensus 92 ~~f 94 (758)
T 3ott_A 92 DRY 94 (758)
T ss_dssp TEE
T ss_pred CEE
Confidence 643
No 360
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=46.25 E-value=1.1e+02 Score=25.42 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=45.8
Q ss_pred CcccccccccccEEEEEEeC----CC--CEEEEecCCCcEE-EEeCCCC-------ceeEEEeecC---------CCcce
Q 024245 9 DPVAVLRGHRASVTDVCFHQ----TK--PILFAGTTGGELR-IWDTVQH-------RTVSSSWVHS---------AAHGI 65 (270)
Q Consensus 9 ~~~~~~~~h~~~v~~~~~s~----~~--~~l~s~~~dg~i~-vwd~~~~-------~~~~~~~~~~---------~~~~v 65 (270)
+|+..-.+..-..+.|+... ++ ..++.|+.+|.|. +...... ..+..+.... ...+|
T Consensus 393 ~Pll~~~~~~y~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI 472 (565)
T 3oky_B 393 RPWFLRTMVRYRLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRI 472 (565)
T ss_dssp SCSEEECSSSSCEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCC
T ss_pred eeEEEEcCCccceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCce
Confidence 34433333333467777664 22 3678899999875 3332211 1222232111 12568
Q ss_pred EEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 66 VSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 66 ~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
..|.+++ +...|+.++.++.+++
T Consensus 473 ~~L~ls~--~~~~LYV~s~~~V~qV 495 (565)
T 3oky_B 473 MGMQLDR--ASGSLYVAFSTCVIKV 495 (565)
T ss_dssp CEEEEEG--GGTEEEEECSSCEEEE
T ss_pred EEEEEcC--CCCEEEEEecCeEEEe
Confidence 8999999 7788998888876655
No 361
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=43.92 E-value=74 Score=27.20 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=40.7
Q ss_pred EEEEEEeC--CCCEEEEecCCCcEEEEeCCC-C---ceeEEEeecCCCcce-EEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 21 VTDVCFHQ--TKPILFAGTTGGELRIWDTVQ-H---RTVSSSWVHSAAHGI-VSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 21 v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~-~---~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
.+.++... +-..++.|..+|.|.-.-+.. . ..+..+.......+| ..|.+++ +...|+.++.++.+++
T Consensus 401 lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~--~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 401 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSI--NQLYLYVMSERQVTRV 475 (681)
T ss_dssp BCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECT--TSSEEEEECSSEEEEE
T ss_pred eEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcC--CCCEEEEEecCEEEEE
Confidence 34444443 334677899999887554432 1 233343332122556 6899988 7788888887765554
No 362
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=36.02 E-value=2.1e+02 Score=24.56 Aligned_cols=71 Identities=10% Similarity=0.156 Sum_probs=42.5
Q ss_pred cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (270)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 97 (270)
...|.++....+| .|..|+.+| +..||..+.+......... ..|.++.. . ++ .|..++.+ -|..+|..+++
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~--~~i~~i~~-~--~g-~lWigt~~-Gl~~~~~~~~~ 132 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFP--TDVRTMAL-Q--GD-TLWLGALN-GLYTYQLQSRK 132 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCC--SCEEEEEE-E--TT-EEEEEETT-EEEEEETTTCC
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCC--ceEEEEEe-c--CC-cEEEEcCC-cceeEeCCCCe
Confidence 3568888877776 555666666 8899987754332111111 34776653 4 54 45555555 57788887654
No 363
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=35.81 E-value=1.7e+02 Score=24.59 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=41.6
Q ss_pred cEEEEEEe----CCC---CEEEEecCCCcEEEEeCCC-C-----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245 20 SVTDVCFH----QTK---PILFAGTTGGELRIWDTVQ-H-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (270)
Q Consensus 20 ~v~~~~~s----~~~---~~l~s~~~dg~i~vwd~~~-~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 86 (270)
..+.++.. .++ ..++.|+.+|.|.-.-+.. + ..+..+.......+|..|.+++ +...|+.++.++
T Consensus 363 ~~T~IaVd~v~a~~g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~--~~~~LyV~s~~~ 440 (590)
T 3nvq_A 363 HYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDA--ERRKLYVSSQWE 440 (590)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEET--TTTEEEEECSSE
T ss_pred cEEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcC--CCCEEEEEecce
Confidence 45555543 344 3677899999876443322 2 1122232212226799999999 878898888876
Q ss_pred cEEE
Q 024245 87 TVKC 90 (270)
Q Consensus 87 ~i~~ 90 (270)
.+++
T Consensus 441 V~qV 444 (590)
T 3nvq_A 441 VSQV 444 (590)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5554
No 364
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=35.05 E-value=1.9e+02 Score=24.71 Aligned_cols=68 Identities=9% Similarity=0.113 Sum_probs=39.7
Q ss_pred CCCCEEEEecCCC--cEEEEeCCCCceeEEEe---ecCCCcceEEEEEeeCCC-CCEEEEEeC--C-----CcEEEEEcc
Q 024245 28 QTKPILFAGTTGG--ELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIG-LNKVISQGR--D-----GTVKCWDIE 94 (270)
Q Consensus 28 ~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~~l~s~~~--d-----~~i~~wd~~ 94 (270)
.++.+++.|+.++ .+.+||..+.+....-. .......-.++.+.. + +..++.|+. + ..+.+||+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 576 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP--VSKQGIILGGGFMDQTTVSDKAIIFKYD 576 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET--TTTEEEEECCBCTTSSCBCCEEEEEEEC
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC--CCCEEEEECCcCCCCCeeeCcEEEEEcc
Confidence 3677888887654 69999998875443221 000101123345554 3 456666665 2 357888888
Q ss_pred CCc
Q 024245 95 NGG 97 (270)
Q Consensus 95 ~~~ 97 (270)
+..
T Consensus 577 ~~~ 579 (695)
T 2zwa_A 577 AEN 579 (695)
T ss_dssp TTC
T ss_pred CCc
Confidence 775
No 365
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=34.68 E-value=1.3e+02 Score=24.65 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=38.6
Q ss_pred ccccEEEEEEeCCCC--EEEEecCCCcEEEEeCCC-Cc---eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245 17 HRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQ-HR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (270)
Q Consensus 17 h~~~v~~~~~s~~~~--~l~s~~~dg~i~vwd~~~-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 90 (270)
....++.++..+.+. .++.|..+|.|.-.-+.. +. .+..+.......+|.. .+.. ++++|+.++.++.++|
T Consensus 403 ~~~~~T~iav~~~~~~tV~FlGT~~G~l~Kv~~~~~~~~~~~~~~~~~~~~~~pi~~-~l~~--~~~~Lyv~s~~~V~~v 479 (527)
T 4fww_A 403 GPVQVTALYVTRLDNVTVAHMGTMDGRILQVELVRSLNYLLYVSNFSLGDSGQPVQR-DVSR--LGDHLLFASGDQVFQV 479 (527)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEETTSEEEEEECSCCSSCCCEEEEEEETTSCCCBCS-CCEE--ETTEEEEEETTEEEEE
T ss_pred CceEEEEEEEeccCCEEEEEEECCCCeEEEEEEcCCCCcceEEEEEEecCCCceeeh-hccc--CCCEEEEEECCEEEEE
Confidence 445678888877443 677899999876554432 21 1222222221134532 2333 4467888877765444
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=34.16 E-value=2.3e+02 Score=24.44 Aligned_cols=74 Identities=9% Similarity=-0.022 Sum_probs=41.7
Q ss_pred EEEEE-EeCCCCEEEEe-----cCCCcEEEEeCCCCceeEE-EeecCCCc------ceEEEEEeeCCCCCEEEEE-----
Q 024245 21 VTDVC-FHQTKPILFAG-----TTGGELRIWDTVQHRTVSS-SWVHSAAH------GIVSVATGPSIGLNKVISQ----- 82 (270)
Q Consensus 21 v~~~~-~s~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~-~~~~~~~~------~v~~~~~~~~~~~~~l~s~----- 82 (270)
...+. ++|++++++.+ +.-..++++|+.+++.+.. +. ...+. ....++|.. +...+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d--~~~~~~~~~~~~~ 207 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN--KDTIIFNLVLHKN 207 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE--TTEEEECCCCSTT
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC--CCEEEEEeCCCCC
Confidence 34555 88999876543 2334799999999876631 22 11000 113458876 54444432
Q ss_pred -----eCCCcEEEEEccCCc
Q 024245 83 -----GRDGTVKCWDIENGG 97 (270)
Q Consensus 83 -----~~d~~i~~wd~~~~~ 97 (270)
+....|+.|.+-+..
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~ 227 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESI 227 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCG
T ss_pred CcCcCCCCCEEEEEECCCCh
Confidence 112468888776653
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=31.42 E-value=2.3e+02 Score=23.75 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=30.4
Q ss_pred eEecCCCCeEEEEecCC-----------CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC
Q 024245 154 DDVPAEGPKYMAVAGEQ-----------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS 216 (270)
Q Consensus 154 ~~~s~~~~~~~~~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~ 216 (270)
++|+|.|. |++..-+. +..+.+.+..+++..+.+. +. ....++.++ |+|+
T Consensus 481 L~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~--------~P---~gaE~TG~~-fspD 541 (592)
T 3zwu_A 481 LGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV--------GP---IGCEVTGIS-FSPD 541 (592)
T ss_dssp EEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE--------CC---TTCEEEEEE-ECTT
T ss_pred eEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe--------CC---CCccCcCee-ECCC
Confidence 89999997 44433111 1245666777777665555 22 345677777 9984
No 368
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=30.34 E-value=1.6e+02 Score=21.63 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=34.1
Q ss_pred EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC----C-------CcEEEEEccCCccC
Q 024245 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----D-------GTVKCWDIENGGLS 99 (270)
Q Consensus 32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----d-------~~i~~wd~~~~~~~ 99 (270)
+++.|+ ..+.+||..+++... ................. ++..++.|+. + ..+.+||..+++..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 445565 469999998877543 22111001122222223 5577777773 1 12778888877653
No 369
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=25.38 E-value=1.2e+02 Score=19.41 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=11.7
Q ss_pred ceEEEEeCCCcceeeeec
Q 024245 172 SEVEIWDLNTAERCTRLH 189 (270)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~ 189 (270)
-.|.|+|. .|+.++++.
T Consensus 41 v~v~I~d~-~G~~V~t~~ 57 (138)
T 3c12_A 41 VNFEITDA-NGTFVKQLS 57 (138)
T ss_dssp EEEEEECS-SCCEEEEEE
T ss_pred EEEEEEeC-CCCEEEEEE
Confidence 45677776 477777766
No 370
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=23.69 E-value=1.2e+02 Score=18.33 Aligned_cols=18 Identities=17% Similarity=0.051 Sum_probs=14.4
Q ss_pred CcEEEEeCCCCceeEEEe
Q 024245 40 GELRIWDTVQHRTVSSSW 57 (270)
Q Consensus 40 g~i~vwd~~~~~~~~~~~ 57 (270)
-.|.|||+.+|....++.
T Consensus 17 E~V~IvNvnNG~RfeTYv 34 (97)
T 1uhe_A 17 MKVEIVDVNNGERFSTYV 34 (97)
T ss_dssp CEEEEEETTTCCEEEEEC
T ss_pred CEEEEEECCCCceEEEEE
Confidence 368999999998877764
No 371
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=23.59 E-value=3.5e+02 Score=23.13 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=42.0
Q ss_pred cEEEEEEe----CCCC---EEEEecCCCcEEEE-eCCCCc-eeEEEeecCCCcceEEEEEeeCCCC--CEEEEEeCCCcE
Q 024245 20 SVTDVCFH----QTKP---ILFAGTTGGELRIW-DTVQHR-TVSSSWVHSAAHGIVSVATGPSIGL--NKVISQGRDGTV 88 (270)
Q Consensus 20 ~v~~~~~s----~~~~---~l~s~~~dg~i~vw-d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~d~~i 88 (270)
..+.|+.. .+++ .++.|..+|.|.-. ...... .+..+..-....+|..|.+++ +. ..|+.++.++.+
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~--~~~~~~Lyv~s~~~V~ 475 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSS--KKGNRFVYAGSNSGVV 475 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECC--SSSSCEEEEECSSCEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEecc--CCCccEEEEEEcCeEE
Confidence 35666653 3443 68889999987543 333322 222332222226799999998 65 788888877655
Q ss_pred EE
Q 024245 89 KC 90 (270)
Q Consensus 89 ~~ 90 (270)
++
T Consensus 476 ~v 477 (663)
T 1olz_A 476 QA 477 (663)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 372
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=23.54 E-value=2.7e+02 Score=21.81 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=51.4
Q ss_pred ccEEEEEEeCCCCEEE--EecC-------------CCcEEEEeCCCC--ceeEEEeecC----CCcceEEEEEeeCC-C-
Q 024245 19 ASVTDVCFHQTKPILF--AGTT-------------GGELRIWDTVQH--RTVSSSWVHS----AAHGIVSVATGPSI-G- 75 (270)
Q Consensus 19 ~~v~~~~~s~~~~~l~--s~~~-------------dg~i~vwd~~~~--~~~~~~~~~~----~~~~v~~~~~~~~~-~- 75 (270)
-.|..+...+.+++=+ +|-. --.|.+||+.++ +.++.+.... ....+..+.+.... +
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 4677888777665322 2311 125889999999 8888876431 12457888887210 1
Q ss_pred ---CCEEE-EEeCCCcEEEEEccCCccCC
Q 024245 76 ---LNKVI-SQGRDGTVKCWDIENGGLSS 100 (270)
Q Consensus 76 ---~~~l~-s~~~d~~i~~wd~~~~~~~~ 100 (270)
+.++. +=+...-|.|+|+.+++..+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swR 195 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWN 195 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEE
Confidence 23443 33356789999999887544
No 373
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=20.91 E-value=18 Score=28.60 Aligned_cols=17 Identities=35% Similarity=0.763 Sum_probs=11.4
Q ss_pred EecCCCcEEEEEcCCCC
Q 024245 226 AGYEDGSILVWDIRNPG 242 (270)
Q Consensus 226 ~~~~dg~i~vwd~~~~~ 242 (270)
.+..+|.|+|||++++.
T Consensus 162 ~~~~~GVVrvWDVkd~s 178 (577)
T 3mwp_A 162 RAGRDGVVRVWDVKNAE 178 (577)
T ss_dssp ----CCEECSEECSCGG
T ss_pred CCCCCCeEEEEecCCHH
Confidence 66789999999999843
Done!