BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024246
         (270 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O49312|YUC7_ARATH Putative flavin-containing monooxygenase YUCCA7 OS=Arabidopsis
           thaliana GN=YUC7 PE=3 SV=1
          Length = 431

 Score = 32.7 bits (73), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 19/99 (19%)

Query: 93  QPASCAVPRFDG-----GDFL--------RRYRGKRIMFVGDSLSLNMWESLSCMIHASV 139
           + A   VP F+G     GD L         RYRGKR++ VG   S  M  SL    H + 
Sbjct: 167 ENAEKVVPEFEGLEDFGGDVLHAGDYKSGERYRGKRVLVVGCGNS-GMEVSLDLCNHDAS 225

Query: 140 PN----AKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVD 174
           P+    +    + +E L   +F E  VT++ +   +LVD
Sbjct: 226 PSMVVRSSVHVLPREVLGKSTF-ELSVTMMKWMPVWLVD 263


>sp|O07600|FABH2_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 OS=Bacillus
           subtilis (strain 168) GN=fabHB PE=2 SV=1
          Length = 325

 Score = 32.0 bits (71), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 26/102 (25%)

Query: 118 FVGDSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVK 177
           FV  S +L M ES+           KT F  ++TL+SV  E YG T              
Sbjct: 247 FVPHSANLRMIESIC---------EKTPFPIEKTLTSV--EHYGNT-------------- 281

Query: 178 QKVGRVLTLN-SIQAGKFWKDMDVLIFNSWHWWTHTGKAQPW 218
             V  VL L+ +++AGK  KD  VL+F      T+TG    W
Sbjct: 282 SSVSIVLALDLAVKAGKLKKDQIVLLFGFGGGLTYTGLLIKW 323


>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae
           GN=rme-6 PE=3 SV=1
          Length = 1104

 Score = 31.2 bits (69), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 145 SFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDV 200
           + +RKET  S  F +Y V  +     YL   +++ V     LN IQ G FW D+D+
Sbjct: 179 TMLRKETSISTRFYKYFVEQMHPTMVYLTKALRKSV-----LNVIQLGNFWLDVDM 229


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,658,509
Number of Sequences: 539616
Number of extensions: 4269726
Number of successful extensions: 10308
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10307
Number of HSP's gapped (non-prelim): 3
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)