Query 024246
Match_columns 270
No_of_seqs 155 out of 700
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02629 powdery mildew resist 100.0 3.4E-85 7.4E-90 621.2 24.2 229 42-270 48-278 (387)
2 PF13839 PC-Esterase: GDSL/SGN 100.0 2.7E-31 5.8E-36 236.6 14.6 155 99-270 1-168 (263)
3 PF14416 PMR5N: PMR5 N termina 100.0 5.6E-29 1.2E-33 175.8 4.8 54 45-98 2-55 (55)
4 cd01842 SGNH_hydrolase_like_5 97.9 3.5E-05 7.6E-10 67.0 7.6 102 116-267 2-103 (183)
5 cd01829 SGNH_hydrolase_peri2 S 92.2 0.8 1.7E-05 38.8 8.0 62 196-268 58-120 (200)
6 cd01834 SGNH_hydrolase_like_2 74.0 1.8 3.9E-05 35.9 1.5 15 113-127 1-15 (191)
7 COG2845 Uncharacterized protei 72.5 4.3 9.3E-05 38.8 3.7 31 107-137 110-140 (354)
8 cd01841 NnaC_like NnaC (CMP-Ne 69.4 2.3 5E-05 35.2 1.1 32 234-267 70-101 (174)
9 PF00185 OTCace: Aspartate/orn 54.7 9.4 0.0002 32.2 2.2 25 112-137 1-25 (158)
10 cd01825 SGNH_hydrolase_peri1 S 54.0 5.7 0.00012 33.0 0.8 12 115-126 1-12 (189)
11 cd01835 SGNH_hydrolase_like_3 52.9 7 0.00015 32.9 1.2 54 196-266 68-121 (193)
12 cd01844 SGNH_hydrolase_like_6 50.2 8.2 0.00018 32.3 1.2 13 115-127 1-13 (177)
13 cd01838 Isoamyl_acetate_hydrol 48.0 8.5 0.00018 32.0 0.9 56 197-267 63-118 (199)
14 cd01832 SGNH_hydrolase_like_1 47.1 8.6 0.00019 31.9 0.8 29 234-266 87-115 (185)
15 PRK10528 multifunctional acyl- 46.0 12 0.00026 32.0 1.5 15 113-127 10-24 (191)
16 cd01827 sialate_O-acetylestera 45.6 11 0.00024 31.4 1.2 53 197-267 67-119 (188)
17 cd01822 Lysophospholipase_L1_l 44.7 11 0.00024 30.9 1.1 51 196-268 63-114 (177)
18 cd01820 PAF_acetylesterase_lik 44.0 8.7 0.00019 33.2 0.4 18 111-128 30-47 (214)
19 cd01831 Endoglucanase_E_like E 42.7 12 0.00026 31.0 1.0 14 115-128 1-14 (169)
20 cd01833 XynB_like SGNH_hydrola 42.6 9.5 0.00021 30.9 0.4 12 115-126 2-13 (157)
21 PRK14805 ornithine carbamoyltr 41.8 18 0.00038 34.0 2.1 26 110-137 144-169 (302)
22 PF09949 DUF2183: Uncharacteri 38.0 28 0.0006 27.5 2.3 25 102-126 53-77 (100)
23 cd01839 SGNH_arylesterase_like 37.8 16 0.00035 31.2 1.1 33 234-266 100-135 (208)
24 cd01830 XynE_like SGNH_hydrola 37.0 17 0.00036 31.1 1.1 30 234-267 101-130 (204)
25 cd01836 FeeA_FeeB_like SGNH_hy 36.8 18 0.00039 30.2 1.2 31 234-266 86-116 (191)
26 PF12026 DUF3513: Domain of un 36.3 2 4.4E-05 38.5 -4.8 17 111-127 132-148 (210)
27 PRK04284 ornithine carbamoyltr 35.1 29 0.00062 33.1 2.4 26 110-136 152-177 (332)
28 cd01828 sialate_O-acetylestera 33.6 19 0.00042 29.5 0.9 32 234-267 67-98 (169)
29 PF00702 Hydrolase: haloacid d 33.6 31 0.00067 28.9 2.2 20 105-124 185-206 (215)
30 cd04502 SGNH_hydrolase_like_7 32.2 21 0.00046 29.4 0.9 13 116-128 2-14 (171)
31 cd04501 SGNH_hydrolase_like_4 32.1 24 0.00052 29.2 1.2 48 197-266 59-106 (183)
32 PF03808 Glyco_tran_WecB: Glyc 30.6 88 0.0019 26.5 4.5 28 96-123 24-58 (172)
33 PF00919 UPF0004: Uncharacteri 30.0 2E+02 0.0043 22.3 6.0 48 193-266 32-79 (98)
34 PRK02102 ornithine carbamoyltr 29.5 42 0.00092 32.0 2.5 26 110-136 152-177 (331)
35 cd01821 Rhamnogalacturan_acety 28.9 29 0.00063 29.3 1.2 54 196-266 64-117 (198)
36 PLN02342 ornithine carbamoyltr 28.7 44 0.00096 32.2 2.5 26 110-137 191-216 (348)
37 PRK10113 cell division modulat 28.5 30 0.00064 25.8 1.0 16 110-125 38-55 (80)
38 PF01861 DUF43: Protein of unk 28.0 30 0.00065 31.8 1.2 12 111-122 43-54 (243)
39 COG0180 TrpS Tryptophanyl-tRNA 27.9 46 0.001 31.7 2.4 37 234-270 58-95 (314)
40 PLN02527 aspartate carbamoyltr 27.7 46 0.001 31.3 2.4 27 110-136 148-174 (306)
41 PRK03515 ornithine carbamoyltr 26.9 45 0.00098 31.9 2.2 25 111-136 154-178 (336)
42 KOG3482 Small nuclear ribonucl 26.5 61 0.0013 24.4 2.4 22 97-118 2-23 (79)
43 COG0078 ArgF Ornithine carbamo 26.5 50 0.0011 31.4 2.4 21 111-133 151-171 (310)
44 PRK00856 pyrB aspartate carbam 26.2 49 0.0011 31.1 2.3 28 110-137 153-180 (305)
45 cd01840 SGNH_hydrolase_yrhL_li 26.0 33 0.00071 28.0 1.0 16 116-131 2-17 (150)
46 PF13472 Lipase_GDSL_2: GDSL-l 26.0 32 0.0007 27.2 0.9 56 194-268 58-113 (179)
47 PRK01713 ornithine carbamoyltr 25.6 52 0.0011 31.3 2.4 25 111-136 154-178 (334)
48 TIGR01489 DKMTPPase-SF 2,3-dik 25.0 75 0.0016 26.1 3.0 13 113-125 162-174 (188)
49 COG0034 PurF Glutamine phospho 24.5 41 0.00089 33.6 1.5 34 106-139 341-375 (470)
50 cd04506 SGNH_hydrolase_YpmR_li 24.0 37 0.0008 28.7 1.0 29 234-264 101-129 (204)
51 PRK12562 ornithine carbamoyltr 22.4 66 0.0014 30.7 2.4 25 111-136 154-178 (334)
52 PF03193 DUF258: Protein of un 22.4 77 0.0017 27.1 2.6 34 102-137 24-57 (161)
53 PRK08192 aspartate carbamoyltr 22.4 63 0.0014 30.9 2.3 26 111-136 157-182 (338)
54 PF14647 FAM91_N: FAM91 N-term 22.1 84 0.0018 29.9 3.0 30 99-138 109-138 (308)
55 TIGR00595 priA primosomal prot 21.9 2.6E+02 0.0056 28.1 6.7 36 234-269 348-384 (505)
56 PF13179 DUF4006: Family of un 21.9 81 0.0017 23.3 2.2 24 3-26 8-31 (66)
57 CHL00073 chlN photochlorophyll 20.8 75 0.0016 31.8 2.5 27 107-136 308-334 (457)
58 TIGR00670 asp_carb_tr aspartat 20.7 73 0.0016 29.9 2.3 28 109-136 146-173 (301)
59 PRK11891 aspartate carbamoyltr 20.3 79 0.0017 31.4 2.5 26 111-136 239-264 (429)
60 cd00229 SGNH_hydrolase SGNH_hy 20.3 3.9E+02 0.0086 20.4 6.3 55 195-267 63-117 (187)
No 1
>PLN02629 powdery mildew resistance 5
Probab=100.00 E-value=3.4e-85 Score=621.16 Aligned_cols=229 Identities=56% Similarity=1.083 Sum_probs=216.1
Q ss_pred CCCCCCcCcccceeeCCCCCCCCCCCCC-CCcCCccccCCCCCCccccceeeecCCCCCCCCChHHHHHHhcCCeEEEEe
Q 024246 42 KQVSGCNLFQGRWVIDPSYPLYDSSSCP-FIDAEFDCLKYGRPDKQYLKYSWQPASCAVPRFDGGDFLRRYRGKRIMFVG 120 (270)
Q Consensus 42 ~~~~~Cd~~~G~WV~d~~~PlY~~~~Cp-~i~~~~~C~~nGRpD~~y~~wrWqP~~C~Lprfd~~~fL~~lrgK~l~FVG 120 (270)
...++||+|+|+||+|+++|+|++++|| ||++++||++|||||++|++|||||++|+||||||.+||++||||||||||
T Consensus 48 ~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVG 127 (387)
T PLN02629 48 ANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVG 127 (387)
T ss_pred CCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEec
Confidence 4457899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhhcccCCCeeeeeecCccEEEEEeecceEEEEEEccceeeeeecccccEEEeccccc-CCCCCCce
Q 024246 121 DSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQA-GKFWKDMD 199 (270)
Q Consensus 121 DSl~Rnq~~SLlClL~~~~~~~~~~~~~~~~~~~~~f~~~n~tv~f~WsPfLv~~~~~~~~~~l~lD~~~~-~~~~~~~D 199 (270)
|||+|||||||+|||++++|...+....+++..+|+|++||+||+||||||||+.+.....+.|+||+++. +++|+++|
T Consensus 128 DSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~~~~~l~LD~id~~a~~w~~~D 207 (387)
T PLN02629 128 DSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQGKRVLKLEEISGNANAWRDAD 207 (387)
T ss_pred cccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCCCceeEEecCcchhhhhhccCC
Confidence 99999999999999999888665555556778999999999999999999999987766567999999986 88999999
Q ss_pred EEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCC
Q 024246 200 VLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPTHYT 270 (270)
Q Consensus 200 vlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP~Hfe 270 (270)
||||||||||.+++..++++|++.|+.++++|++.+|||+||+||++||++++++.||+|||||+||+|||
T Consensus 208 vlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe 278 (387)
T PLN02629 208 VLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYN 278 (387)
T ss_pred EEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCccccc
Confidence 99999999999999888999999999999999999999999999999999999999999999999999997
No 2
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=99.97 E-value=2.7e-31 Score=236.63 Aligned_cols=155 Identities=37% Similarity=0.689 Sum_probs=125.1
Q ss_pred CCCCChHHHHHHhcCCeEEEEecchhHHHHHHHHhhhhcccC-----CCeeeeeecCccEEEEEeecceEEEEEEcccee
Q 024246 99 VPRFDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHASVP-----NAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLV 173 (270)
Q Consensus 99 Lprfd~~~fL~~lrgK~l~FVGDSl~Rnq~~SLlClL~~~~~-----~~~~~~~~~~~~~~~~f~~~n~tv~f~WsPfLv 173 (270)
|++||+.++|++||||+|+|||||++||+|+||+|+|.+..+ +........+....+.|+++|+||+|+|+|||+
T Consensus 1 ~~~~d~~~cL~~lr~k~i~fiGDS~~Rq~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~p~l~ 80 (263)
T PF13839_consen 1 LPRFDARECLQRLRNKRIVFIGDSTTRQQYESLVCLLGPEVPSWQESPHSGIEFPNHRNFRYNFPDYNVTLSFYWDPFLV 80 (263)
T ss_pred CChhhHHHHHHHccCCEEEEEechhhHHHHHHHHHHHhccccccccccccccccccCCceEEeecCCCeEEEEecccccc
Confidence 689999999999999999999999999999999999998766 222222223567788999999999999999998
Q ss_pred eeeecccccEEEecccc-c-CCCCC----CceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHH
Q 024246 174 DIVKQKVGRVLTLNSIQ-A-GKFWK----DMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARW 247 (270)
Q Consensus 174 ~~~~~~~~~~l~lD~~~-~-~~~~~----~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~w 247 (270)
+. +|.++ . ...|. .+||||+|+|+||.+.+....+ ++. .++...++|+.++++++++
T Consensus 81 ~~----------l~~~~~~~~~~~~~~~~~pdvvV~nsG~W~~~~~~~~~~-----~~~--~~~~~~~~y~~~l~~~~~~ 143 (263)
T PF13839_consen 81 DQ----------LDSIDEEIANNWPTSGARPDVVVINSGLWYLRRSGFIEW-----GDN--KEINPLEAYRNRLRTLADW 143 (263)
T ss_pred cc----------ccccchhhhccccccccCCCEEEEEcchhhhhcchhccc-----CCC--cCcchHHHHHHHHHHHHHH
Confidence 64 33322 1 33344 8999999999999986533323 333 5677899999999999999
Q ss_pred HHhcCCCCC--ceEEEEeCCCCCCC
Q 024246 248 VDLNVDPSQ--TKVFFQGISPTHYT 270 (270)
Q Consensus 248 i~~~~~~~k--~~VffRT~SP~Hfe 270 (270)
+.+.+++.+ ++|||||++|.||+
T Consensus 144 ~~~~~~~~~~~~~v~~r~~~P~h~~ 168 (263)
T PF13839_consen 144 VRRLLDRSKPPTRVFWRTTSPVHFE 168 (263)
T ss_pred HHhhhccccccceEEEEecCCcccc
Confidence 998887655 99999999999986
No 3
>PF14416 PMR5N: PMR5 N terminal Domain
Probab=99.95 E-value=5.6e-29 Score=175.83 Aligned_cols=54 Identities=61% Similarity=1.400 Sum_probs=52.7
Q ss_pred CCCcCcccceeeCCCCCCCCCCCCCCCcCCccccCCCCCCccccceeeecCCCC
Q 024246 45 SGCNLFQGRWVIDPSYPLYDSSSCPFIDAEFDCLKYGRPDKQYLKYSWQPASCA 98 (270)
Q Consensus 45 ~~Cd~~~G~WV~d~~~PlY~~~~Cp~i~~~~~C~~nGRpD~~y~~wrWqP~~C~ 98 (270)
++||+|+|+||+|+++|+|++++||||++++||++|||||++|++|||||++|+
T Consensus 2 ~~Cd~~~G~WV~D~~~PlY~~~~Cp~i~~~~nC~~nGRpD~~y~~wRWqP~~Cd 55 (55)
T PF14416_consen 2 KRCDYFDGRWVPDPSYPLYTNSTCPFIDEGFNCQKNGRPDSDYLKWRWQPRGCD 55 (55)
T ss_pred CccCcccCEEEeCCCCCccCCCCCCcCCCccchhhcCCCCCccceeeecCCCCC
Confidence 579999999999999999999999999999999999999999999999999996
No 4
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.93 E-value=3.5e-05 Score=67.02 Aligned_cols=102 Identities=15% Similarity=0.280 Sum_probs=64.4
Q ss_pred EEEEecchhHHHHHHHHhhhhcccCCCeeeeeecCccEEEEEeecceEEEEEEccceeeeeecccccEEEecccccCCCC
Q 024246 116 IMFVGDSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFW 195 (270)
Q Consensus 116 l~FVGDSl~Rnq~~SLlClL~~~~~~~~~~~~~~~~~~~~~f~~~n~tv~f~WsPfLv~~~~~~~~~~l~lD~~~~~~~~ 195 (270)
|+|+|||+.|-.|.-|+|+|....-=....+... .+.+..-|..-++.+|
T Consensus 2 v~~lgds~~ravykdlv~l~q~~~~l~~~~lr~k------------------------------~e~~f~~D~ll~gg~~ 51 (183)
T cd01842 2 VVILGDSIQRAVYKDLVLLLQKDSLLSSSQLKAK------------------------------GELSFENDVLLEGGRL 51 (183)
T ss_pred EEEEccHHHHHHHHHHHHHhcCCccccHHHHhhh------------------------------hhhhhccceeecCCce
Confidence 7899999999999999999973210000000000 0001111211123333
Q ss_pred CCceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC
Q 024246 196 KDMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPT 267 (270)
Q Consensus 196 ~~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP~ 267 (270)
|||+||+|.|=.. +|.. ...+.|++-|.+++.-+.+-+ |.+++++|.|.+|-
T Consensus 52 ---DVIi~Ns~LWDl~--------ry~~--------~~~~~Y~~NL~~Lf~rLk~~l-p~~allIW~tt~Pv 103 (183)
T cd01842 52 ---DLVIMNSCLWDLS--------RYQR--------NSMKTYRENLERLFSKLDSVL-PIECLIVWNTAMPV 103 (183)
T ss_pred ---eEEEEecceeccc--------ccCC--------CCHHHHHHHHHHHHHHHHhhC-CCccEEEEecCCCC
Confidence 9999999999652 3321 146899999999997665433 56789999999993
No 5
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=92.20 E-value=0.8 Score=38.84 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=36.4
Q ss_pred CCceEEEEeCcccccccCCCCCcceecCCccc-cccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCC
Q 024246 196 KDMDVLIFNSWHWWTHTGKAQPWDYIQDGQTL-LKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPTH 268 (270)
Q Consensus 196 ~~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~-~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP~H 268 (270)
..+|+||+..|..=.... ...+... ...-...++|+..|+.+++.+.+ .+.+|++-+..|.+
T Consensus 58 ~~pd~vii~~G~ND~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~----~~~~vili~~pp~~ 120 (200)
T cd01829 58 EKPDVVVVFLGANDRQDI-------RDGDGYLKFGSPEWEEEYRQRIDELLNVARA----KGVPVIWVGLPAMR 120 (200)
T ss_pred CCCCEEEEEecCCCCccc-------cCCCceeecCChhHHHHHHHHHHHHHHHHHh----CCCcEEEEcCCCCC
Confidence 467999999998854211 1110000 00112457888888888776543 35678888776653
No 6
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=74.01 E-value=1.8 Score=35.90 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=13.8
Q ss_pred CCeEEEEecchhHHH
Q 024246 113 GKRIMFVGDSLSLNM 127 (270)
Q Consensus 113 gK~l~FVGDSl~Rnq 127 (270)
|++|+++|||++...
T Consensus 1 ~~~v~~~GDSit~g~ 15 (191)
T cd01834 1 GDRIVFIGNSITDRG 15 (191)
T ss_pred CCEEEEeCCChhhcc
Confidence 789999999999976
No 7
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.53 E-value=4.3 Score=38.78 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.0
Q ss_pred HHHHhcCCeEEEEecchhHHHHHHHHhhhhc
Q 024246 107 FLRRYRGKRIMFVGDSLSLNMWESLSCMIHA 137 (270)
Q Consensus 107 fL~~lrgK~l~FVGDSl~Rnq~~SLlClL~~ 137 (270)
..+.=.+++|.|||||+++..-+.|..-|..
T Consensus 110 ~~k~~~a~kvLvvGDslm~gla~gl~~al~t 140 (354)
T COG2845 110 AAKSRDADKVLVVGDSLMQGLAEGLDKALAT 140 (354)
T ss_pred hhhCCCCCEEEEechHHhhhhHHHHHHHhcc
Confidence 3444567889999999999999998887753
No 8
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=69.41 E-value=2.3 Score=35.20 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC
Q 024246 234 LEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPT 267 (270)
Q Consensus 234 ~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP~ 267 (270)
.+.|+..++++++-+.+. .++++|++-+..|.
T Consensus 70 ~~~~~~~~~~l~~~~~~~--~p~~~vi~~~~~p~ 101 (174)
T cd01841 70 SNQFIKWYRDIIEQIREE--FPNTKIYLLSVLPV 101 (174)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCEEEEEeeCCc
Confidence 345666666666655442 23556777666654
No 9
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=54.71 E-value=9.4 Score=32.21 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=20.6
Q ss_pred cCCeEEEEecchhHHHHHHHHhhhhc
Q 024246 112 RGKRIMFVGDSLSLNMWESLSCMIHA 137 (270)
Q Consensus 112 rgK~l~FVGDSl~Rnq~~SLlClL~~ 137 (270)
.|++|+|||| ..=|...|++.++..
T Consensus 1 ~gl~i~~vGD-~~~rv~~Sl~~~~~~ 25 (158)
T PF00185_consen 1 KGLKIAYVGD-GHNRVAHSLIELLAK 25 (158)
T ss_dssp TTEEEEEESS-TTSHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCChHHHHHHHHHHH
Confidence 4899999999 556788999988853
No 10
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=54.02 E-value=5.7 Score=33.00 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=10.4
Q ss_pred eEEEEecchhHH
Q 024246 115 RIMFVGDSLSLN 126 (270)
Q Consensus 115 ~l~FVGDSl~Rn 126 (270)
||+|+|||++-.
T Consensus 1 ~iv~~GDS~t~g 12 (189)
T cd01825 1 RIAQLGDSHIAG 12 (189)
T ss_pred CeeEecCccccc
Confidence 689999999963
No 11
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=52.92 E-value=7 Score=32.91 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=28.9
Q ss_pred CCceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCC
Q 024246 196 KDMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISP 266 (270)
Q Consensus 196 ~~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP 266 (270)
..+|+||+..|.==. ...+.. .+ ....+.|+..++.+.+.+.. ++.|++-+..|
T Consensus 68 ~~pd~V~i~~G~ND~----------~~~~~~-~~-~~~~~~~~~~~~~ii~~~~~-----~~~vi~~~~~p 121 (193)
T cd01835 68 NVPNRLVLSVGLNDT----------ARGGRK-RP-QLSARAFLFGLNQLLEEAKR-----LVPVLVVGPTP 121 (193)
T ss_pred CCCCEEEEEecCccc----------ccccCc-cc-ccCHHHHHHHHHHHHHHHhc-----CCcEEEEeCCC
Confidence 467999988874211 111000 00 11246778888777765432 34566666544
No 12
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=50.20 E-value=8.2 Score=32.25 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=11.3
Q ss_pred eEEEEecchhHHH
Q 024246 115 RIMFVGDSLSLNM 127 (270)
Q Consensus 115 ~l~FVGDSl~Rnq 127 (270)
||+|+|||++...
T Consensus 1 ~iv~~GDSit~G~ 13 (177)
T cd01844 1 PWVFYGTSISQGA 13 (177)
T ss_pred CEEEEeCchhcCc
Confidence 6899999998865
No 13
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=48.01 E-value=8.5 Score=31.99 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=33.8
Q ss_pred CceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC
Q 024246 197 DMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPT 267 (270)
Q Consensus 197 ~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP~ 267 (270)
.+|+||+..|.-=.... +.. . -...+.|+..++.+++.+.+. .++++|++-|..|.
T Consensus 63 ~pd~vii~~G~ND~~~~----------~~~--~-~~~~~~~~~~~~~~i~~~~~~--~~~~~ii~~t~~~~ 118 (199)
T cd01838 63 QPDLVTIFFGANDAALP----------GQP--Q-HVPLDEYKENLRKIVSHLKSL--SPKTKVILITPPPV 118 (199)
T ss_pred CceEEEEEecCccccCC----------CCC--C-cccHHHHHHHHHHHHHHHHhh--CCCCeEEEeCCCCC
Confidence 78999998876432111 000 0 012567888888888766542 24667888877663
No 14
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=47.15 E-value=8.6 Score=31.91 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCC
Q 024246 234 LEAFYKGMSTWARWVDLNVDPSQTKVFFQGISP 266 (270)
Q Consensus 234 ~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP 266 (270)
.+.|+..++++++.+. .++..|++-|..|
T Consensus 87 ~~~~~~~~~~~i~~i~----~~~~~vil~~~~~ 115 (185)
T cd01832 87 PDTYRADLEEAVRRLR----AAGARVVVFTIPD 115 (185)
T ss_pred HHHHHHHHHHHHHHHH----hCCCEEEEecCCC
Confidence 4567777777777665 2345677766544
No 15
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=46.04 E-value=12 Score=32.00 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=12.8
Q ss_pred CCeEEEEecchhHHH
Q 024246 113 GKRIMFVGDSLSLNM 127 (270)
Q Consensus 113 gK~l~FVGDSl~Rnq 127 (270)
+.+|+|+|||++...
T Consensus 10 ~~~iv~~GDSit~G~ 24 (191)
T PRK10528 10 ADTLLILGDSLSAGY 24 (191)
T ss_pred CCEEEEEeCchhhcC
Confidence 678999999998763
No 16
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.58 E-value=11 Score=31.43 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=31.6
Q ss_pred CceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC
Q 024246 197 DMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPT 267 (270)
Q Consensus 197 ~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP~ 267 (270)
.+|+|||..|.== ..... ....+.|+..++.+++.+.+. .+++++++-|..|.
T Consensus 67 ~pd~Vii~~G~ND----------~~~~~------~~~~~~~~~~l~~li~~i~~~--~~~~~iil~t~~p~ 119 (188)
T cd01827 67 NPNIVIIKLGTND----------AKPQN------WKYKDDFKKDYETMIDSFQAL--PSKPKIYICYPIPA 119 (188)
T ss_pred CCCEEEEEcccCC----------CCCCC------CccHHHHHHHHHHHHHHHHHH--CCCCeEEEEeCCcc
Confidence 5799998887421 11110 012457777788777766542 34667888777663
No 17
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=44.75 E-value=11 Score=30.86 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=28.7
Q ss_pred CCceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeC-CCCC
Q 024246 196 KDMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGI-SPTH 268 (270)
Q Consensus 196 ~~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~-SP~H 268 (270)
..+|+||+..|.-=. .. + . ..+.|+..++.+++-+.+. +.++++-+. .|.+
T Consensus 63 ~~pd~v~i~~G~ND~----------~~-~------~-~~~~~~~~l~~li~~~~~~----~~~vil~~~~~~~~ 114 (177)
T cd01822 63 HKPDLVILELGGNDG----------LR-G------I-PPDQTRANLRQMIETAQAR----GAPVLLVGMQAPPN 114 (177)
T ss_pred cCCCEEEEeccCccc----------cc-C------C-CHHHHHHHHHHHHHHHHHC----CCeEEEEecCCCCc
Confidence 367999998884311 00 0 1 1456777777777765542 445666554 3443
No 18
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=44.02 E-value=8.7 Score=33.25 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=13.9
Q ss_pred hcCCeEEEEecchhHHHH
Q 024246 111 YRGKRIMFVGDSLSLNMW 128 (270)
Q Consensus 111 lrgK~l~FVGDSl~Rnq~ 128 (270)
....+|+|+|||++....
T Consensus 30 ~~~~~iv~lGDSit~g~~ 47 (214)
T cd01820 30 QKEPDVVFIGDSITQNWE 47 (214)
T ss_pred cCCCCEEEECchHhhhhc
Confidence 344579999999998643
No 19
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=42.74 E-value=12 Score=30.95 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=11.2
Q ss_pred eEEEEecchhHHHH
Q 024246 115 RIMFVGDSLSLNMW 128 (270)
Q Consensus 115 ~l~FVGDSl~Rnq~ 128 (270)
+|+|+|||++-...
T Consensus 1 ~i~~iGDSit~G~~ 14 (169)
T cd01831 1 KIEFIGDSITCGYG 14 (169)
T ss_pred CEEEEeccccccCc
Confidence 58999999987544
No 20
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.57 E-value=9.5 Score=30.86 Aligned_cols=12 Identities=50% Similarity=0.792 Sum_probs=10.7
Q ss_pred eEEEEecchhHH
Q 024246 115 RIMFVGDSLSLN 126 (270)
Q Consensus 115 ~l~FVGDSl~Rn 126 (270)
+|+++|||++-.
T Consensus 2 ~~~~~Gds~~~g 13 (157)
T cd01833 2 RIMPLGDSITWG 13 (157)
T ss_pred ceeecCCceeec
Confidence 689999999877
No 21
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=41.76 E-value=18 Score=34.05 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=21.4
Q ss_pred HhcCCeEEEEecchhHHHHHHHHhhhhc
Q 024246 110 RYRGKRIMFVGDSLSLNMWESLSCMIHA 137 (270)
Q Consensus 110 ~lrgK~l~FVGDSl~Rnq~~SLlClL~~ 137 (270)
.++|++|+||||. +|...|++.++..
T Consensus 144 ~l~g~kva~vGD~--~~v~~S~~~~~~~ 169 (302)
T PRK14805 144 DVSKVKLAYVGDG--NNVTHSLMYGAAI 169 (302)
T ss_pred CcCCcEEEEEcCC--CccHHHHHHHHHH
Confidence 3789999999994 5688999988753
No 22
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=38.00 E-value=28 Score=27.48 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=20.1
Q ss_pred CChHHHHHHhcCCeEEEEecchhHH
Q 024246 102 FDGGDFLRRYRGKRIMFVGDSLSLN 126 (270)
Q Consensus 102 fd~~~fL~~lrgK~l~FVGDSl~Rn 126 (270)
-.-+++++..-+++.++||||-..-
T Consensus 53 ~~i~~i~~~fP~~kfiLIGDsgq~D 77 (100)
T PF09949_consen 53 DNIERILRDFPERKFILIGDSGQHD 77 (100)
T ss_pred HHHHHHHHHCCCCcEEEEeeCCCcC
Confidence 3445688889999999999997654
No 23
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.76 E-value=16 Score=31.17 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhcCC---CCCceEEEEeCCC
Q 024246 234 LEAFYKGMSTWARWVDLNVD---PSQTKVFFQGISP 266 (270)
Q Consensus 234 ~~A~r~Al~t~~~wi~~~~~---~~k~~VffRT~SP 266 (270)
.+.|+..++++++-+.+... .++++|++-+..|
T Consensus 100 ~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~ 135 (208)
T cd01839 100 AAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPP 135 (208)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCc
Confidence 45777777777776655321 1456677766544
No 24
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.02 E-value=17 Score=31.13 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC
Q 024246 234 LEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPT 267 (270)
Q Consensus 234 ~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP~ 267 (270)
.+.|+..++++++.+.+. +.+|++-|..|.
T Consensus 101 ~~~~~~~l~~ii~~~~~~----~~~vil~t~~P~ 130 (204)
T cd01830 101 AEELIAGYRQLIRRAHAR----GIKVIGATITPF 130 (204)
T ss_pred HHHHHHHHHHHHHHHHHC----CCeEEEecCCCC
Confidence 567788888887766542 457788777663
No 25
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.81 E-value=18 Score=30.20 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCC
Q 024246 234 LEAFYKGMSTWARWVDLNVDPSQTKVFFQGISP 266 (270)
Q Consensus 234 ~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP 266 (270)
.+.|+..++++++.+.+. .+++.|++-|.-|
T Consensus 86 ~~~~~~~l~~li~~i~~~--~~~~~iiv~~~p~ 116 (191)
T cd01836 86 IARWRKQLAELVDALRAK--FPGARVVVTAVPP 116 (191)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCEEEEECCCC
Confidence 456777777777766543 2456777777644
No 26
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.
Probab=36.28 E-value=2 Score=38.47 Aligned_cols=17 Identities=24% Similarity=0.647 Sum_probs=14.6
Q ss_pred hcCCeEEEEecchhHHH
Q 024246 111 YRGKRIMFVGDSLSLNM 127 (270)
Q Consensus 111 lrgK~l~FVGDSl~Rnq 127 (270)
|-+.+++||||+|.|+-
T Consensus 132 l~ahkLVfiGDTl~r~~ 148 (210)
T PF12026_consen 132 LSAHKLVFIGDTLCREA 148 (210)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred EEeeeeeeeccHHHHHh
Confidence 77889999999999864
No 27
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=35.10 E-value=29 Score=33.09 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=21.3
Q ss_pred HhcCCeEEEEecchhHHHHHHHHhhhh
Q 024246 110 RYRGKRIMFVGDSLSLNMWESLSCMIH 136 (270)
Q Consensus 110 ~lrgK~l~FVGDSl~Rnq~~SLlClL~ 136 (270)
.++|++|+||||..+ |...|++-++.
T Consensus 152 ~l~g~kia~vGD~~~-~v~~Sl~~~~~ 177 (332)
T PRK04284 152 PYKDIKFTYVGDGRN-NVANALMQGAA 177 (332)
T ss_pred CcCCcEEEEecCCCc-chHHHHHHHHH
Confidence 378999999999766 58888888775
No 28
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.60 E-value=19 Score=29.48 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC
Q 024246 234 LEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPT 267 (270)
Q Consensus 234 ~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP~ 267 (270)
.+.|++.++++++.+.+. .++.+|++-|.-|.
T Consensus 67 ~~~~~~~l~~li~~~~~~--~~~~~vi~~~~~p~ 98 (169)
T cd01828 67 DEDIVANYRTILEKLRKH--FPNIKIVVQSILPV 98 (169)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCeEEEEecCCc
Confidence 467777777777766543 24567888777664
No 29
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=33.56 E-value=31 Score=28.90 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=15.6
Q ss_pred HHHHHHhc--CCeEEEEecchh
Q 024246 105 GDFLRRYR--GKRIMFVGDSLS 124 (270)
Q Consensus 105 ~~fL~~lr--gK~l~FVGDSl~ 124 (270)
.++++.|+ +.++++|||+++
T Consensus 185 ~~~i~~l~~~~~~v~~vGDg~n 206 (215)
T PF00702_consen 185 LRIIKELQVKPGEVAMVGDGVN 206 (215)
T ss_dssp HHHHHHHTCTGGGEEEEESSGG
T ss_pred HHHHHHHhcCCCEEEEEccCHH
Confidence 45677776 668999999984
No 30
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=32.24 E-value=21 Score=29.36 Aligned_cols=13 Identities=31% Similarity=0.174 Sum_probs=11.4
Q ss_pred EEEEecchhHHHH
Q 024246 116 IMFVGDSLSLNMW 128 (270)
Q Consensus 116 l~FVGDSl~Rnq~ 128 (270)
|+|+|||+.+.+-
T Consensus 2 i~~~g~s~~~~w~ 14 (171)
T cd04502 2 ILFYGSSSIRLWD 14 (171)
T ss_pred EEEEcCchhcchh
Confidence 7999999999773
No 31
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=32.10 E-value=24 Score=29.24 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=28.2
Q ss_pred CceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCC
Q 024246 197 DMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISP 266 (270)
Q Consensus 197 ~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP 266 (270)
.+|+||+..|.-=... + . ..+.|...++.+++.+.+ ...++++-+..|
T Consensus 59 ~~d~v~i~~G~ND~~~-----------~------~-~~~~~~~~~~~li~~~~~----~~~~~il~~~~p 106 (183)
T cd04501 59 KPAVVIIMGGTNDIIV-----------N------T-SLEMIKDNIRSMVELAEA----NGIKVILASPLP 106 (183)
T ss_pred CCCEEEEEeccCcccc-----------C------C-CHHHHHHHHHHHHHHHHH----CCCcEEEEeCCC
Confidence 4689988887652210 0 0 245677777777776643 234566666655
No 32
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=30.63 E-value=88 Score=26.53 Aligned_cols=28 Identities=36% Similarity=0.641 Sum_probs=22.1
Q ss_pred CCCC-CCCChHHHHHHh------cCCeEEEEecch
Q 024246 96 SCAV-PRFDGGDFLRRY------RGKRIMFVGDSL 123 (270)
Q Consensus 96 ~C~L-prfd~~~fL~~l------rgK~l~FVGDSl 123 (270)
|-.+ .|+++.+|+..+ +|++|.|+|.+-
T Consensus 24 g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~ 58 (172)
T PF03808_consen 24 GRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSE 58 (172)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 6667 889999877553 578999999884
No 33
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=30.02 E-value=2e+02 Score=22.30 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=31.7
Q ss_pred CCCCCceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCC
Q 024246 193 KFWKDMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISP 266 (270)
Q Consensus 193 ~~~~~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP 266 (270)
...+++|++|+|| |.+ ...|-+++++.+.++...+ .++.++++-+--|
T Consensus 32 ~~~e~AD~iiiNT-------------C~V-----------~~~Ae~k~~~~i~~l~~~~--~~~~~ivv~GC~a 79 (98)
T PF00919_consen 32 DDPEEADVIIINT-------------CTV-----------RESAEQKSRNRIRKLKKLK--KPGAKIVVTGCMA 79 (98)
T ss_pred cccccCCEEEEEc-------------CCC-----------CcHHHHHHHHHHHHHHHhc--CCCCEEEEEeCcc
Confidence 3446789999998 434 2347788888888776654 2456677665443
No 34
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=29.47 E-value=42 Score=32.01 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=21.4
Q ss_pred HhcCCeEEEEecchhHHHHHHHHhhhh
Q 024246 110 RYRGKRIMFVGDSLSLNMWESLSCMIH 136 (270)
Q Consensus 110 ~lrgK~l~FVGDSl~Rnq~~SLlClL~ 136 (270)
.++|++|++|||.-+ |...|++.++.
T Consensus 152 ~l~g~~va~vGd~~~-~v~~Sl~~~~~ 177 (331)
T PRK02102 152 PLKGLKLAYVGDGRN-NMANSLMVGGA 177 (331)
T ss_pred CCCCCEEEEECCCcc-cHHHHHHHHHH
Confidence 378999999999865 48889888775
No 35
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=28.86 E-value=29 Score=29.29 Aligned_cols=54 Identities=6% Similarity=-0.058 Sum_probs=31.2
Q ss_pred CCceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCC
Q 024246 196 KDMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISP 266 (270)
Q Consensus 196 ~~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP 266 (270)
+.+|+||+..|.-=..... + + .-...+.|+..|+++++-+.+. +..+++-|..|
T Consensus 64 ~~pdlVii~~G~ND~~~~~------~--~-----~~~~~~~~~~nl~~ii~~~~~~----~~~~il~tp~~ 117 (198)
T cd01821 64 KPGDYVLIQFGHNDQKPKD------P--E-----YTEPYTTYKEYLRRYIAEARAK----GATPILVTPVT 117 (198)
T ss_pred CCCCEEEEECCCCCCCCCC------C--C-----CCCcHHHHHHHHHHHHHHHHHC----CCeEEEECCcc
Confidence 4689999999865431110 0 0 0112567888888888766542 44566655444
No 36
>PLN02342 ornithine carbamoyltransferase
Probab=28.69 E-value=44 Score=32.15 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=21.4
Q ss_pred HhcCCeEEEEecchhHHHHHHHHhhhhc
Q 024246 110 RYRGKRIMFVGDSLSLNMWESLSCMIHA 137 (270)
Q Consensus 110 ~lrgK~l~FVGDSl~Rnq~~SLlClL~~ 137 (270)
.+.|++|++|||- .|...|++.++..
T Consensus 191 ~l~glkva~vGD~--~nva~Sli~~~~~ 216 (348)
T PLN02342 191 RLEGTKVVYVGDG--NNIVHSWLLLAAV 216 (348)
T ss_pred CcCCCEEEEECCC--chhHHHHHHHHHH
Confidence 3789999999995 3688999988753
No 37
>PRK10113 cell division modulator; Provisional
Probab=28.52 E-value=30 Score=25.76 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=12.0
Q ss_pred HhcCCeEEEE--ecchhH
Q 024246 110 RYRGKRIMFV--GDSLSL 125 (270)
Q Consensus 110 ~lrgK~l~FV--GDSl~R 125 (270)
.||||-++|| |||.-|
T Consensus 38 ~LrGKYVAFvl~ge~FrR 55 (80)
T PRK10113 38 MLRGKYVAFVLMGESFLR 55 (80)
T ss_pred eeccceEEEEEechhhcc
Confidence 4899999997 555444
No 38
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=28.00 E-value=30 Score=31.76 Aligned_cols=12 Identities=58% Similarity=1.173 Sum_probs=9.1
Q ss_pred hcCCeEEEEecc
Q 024246 111 YRGKRIMFVGDS 122 (270)
Q Consensus 111 lrgK~l~FVGDS 122 (270)
|.||+|+||||=
T Consensus 43 L~gk~il~lGDD 54 (243)
T PF01861_consen 43 LEGKRILFLGDD 54 (243)
T ss_dssp STT-EEEEES-T
T ss_pred ccCCEEEEEcCC
Confidence 899999999993
No 39
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.91 E-value=46 Score=31.67 Aligned_cols=37 Identities=22% Similarity=0.440 Sum_probs=31.3
Q ss_pred HHHHHHHH-HHHHHHHHhcCCCCCceEEEEeCCCCCCC
Q 024246 234 LEAFYKGM-STWARWVDLNVDPSQTKVFFQGISPTHYT 270 (270)
Q Consensus 234 ~~A~r~Al-~t~~~wi~~~~~~~k~~VffRT~SP~Hfe 270 (270)
.+..+.+. ..+++||.-.+||.|+.+|+.|--|.|.|
T Consensus 58 ~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e~~e 95 (314)
T COG0180 58 EEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPEHAE 95 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccEEEEccCchHHHH
Confidence 37777775 47788999999999999999999999865
No 40
>PLN02527 aspartate carbamoyltransferase
Probab=27.67 E-value=46 Score=31.28 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=21.2
Q ss_pred HhcCCeEEEEecchhHHHHHHHHhhhh
Q 024246 110 RYRGKRIMFVGDSLSLNMWESLSCMIH 136 (270)
Q Consensus 110 ~lrgK~l~FVGDSl~Rnq~~SLlClL~ 136 (270)
.++|++|+||||-.+=|...|++-++.
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~ 174 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLA 174 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHH
Confidence 378999999999865457888877664
No 41
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=26.85 E-value=45 Score=31.86 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=20.0
Q ss_pred hcCCeEEEEecchhHHHHHHHHhhhh
Q 024246 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (270)
Q Consensus 111 lrgK~l~FVGDSl~Rnq~~SLlClL~ 136 (270)
+.|++|+||||-.+ |...|++-++.
T Consensus 154 l~g~~ia~vGD~~~-~v~~Sl~~~~~ 178 (336)
T PRK03515 154 FNEMTLAYAGDARN-NMGNSLLEAAA 178 (336)
T ss_pred cCCCEEEEeCCCcC-cHHHHHHHHHH
Confidence 67899999999434 58888888775
No 42
>KOG3482 consensus Small nuclear ribonucleoprotein (snRNP) SMF [RNA processing and modification]
Probab=26.53 E-value=61 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.0
Q ss_pred CCCCCCChHHHHHHhcCCeEEE
Q 024246 97 CAVPRFDGGDFLRRYRGKRIMF 118 (270)
Q Consensus 97 C~Lprfd~~~fL~~lrgK~l~F 118 (270)
|+...-||+.||..|.||++..
T Consensus 2 ~a~~PvNPKpFL~~l~gk~V~v 23 (79)
T KOG3482|consen 2 SAKQPVNPKPFLNGLTGKPVLV 23 (79)
T ss_pred CCcccCCchHHHhhccCCeEEE
Confidence 5555669999999999998764
No 43
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=26.52 E-value=50 Score=31.40 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.1
Q ss_pred hcCCeEEEEecchhHHHHHHHHh
Q 024246 111 YRGKRIMFVGDSLSLNMWESLSC 133 (270)
Q Consensus 111 lrgK~l~FVGDSl~Rnq~~SLlC 133 (270)
++|++++||||- -|+-.||+-
T Consensus 151 l~g~k~a~vGDg--NNv~nSl~~ 171 (310)
T COG0078 151 LKGLKLAYVGDG--NNVANSLLL 171 (310)
T ss_pred ccCcEEEEEcCc--chHHHHHHH
Confidence 799999999999 777788764
No 44
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=26.19 E-value=49 Score=31.14 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=22.0
Q ss_pred HhcCCeEEEEecchhHHHHHHHHhhhhc
Q 024246 110 RYRGKRIMFVGDSLSLNMWESLSCMIHA 137 (270)
Q Consensus 110 ~lrgK~l~FVGDSl~Rnq~~SLlClL~~ 137 (270)
.++|++|+||||-..=|...|++-++..
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~ 180 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTR 180 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHH
Confidence 3789999999997644777888777653
No 45
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=26.05 E-value=33 Score=27.97 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=11.9
Q ss_pred EEEEecchhHHHHHHH
Q 024246 116 IMFVGDSLSLNMWESL 131 (270)
Q Consensus 116 l~FVGDSl~Rnq~~SL 131 (270)
|.|+|||++-..-..|
T Consensus 2 v~~~GDSv~~~~~~~~ 17 (150)
T cd01840 2 ITAIGDSVMLDSSPAL 17 (150)
T ss_pred eeEEeehHHHchHHHH
Confidence 6889999988754443
No 46
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=25.99 E-value=32 Score=27.23 Aligned_cols=56 Identities=9% Similarity=0.038 Sum_probs=31.4
Q ss_pred CCCCceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCC
Q 024246 194 FWKDMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPTH 268 (270)
Q Consensus 194 ~~~~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP~H 268 (270)
....+|+||+..|.== ... +.. .......++.+|+++++.+.. .+.|++-+..|..
T Consensus 58 ~~~~~d~vvi~~G~ND----------~~~-~~~---~~~~~~~~~~~l~~~i~~~~~-----~~~vi~~~~~~~~ 113 (179)
T PF13472_consen 58 KDPKPDLVVISFGTND----------VLN-GDE---NDTSPEQYEQNLRRIIEQLRP-----HGPVILVSPPPRG 113 (179)
T ss_dssp CGTTCSEEEEE--HHH----------HCT-CTT---CHHHHHHHHHHHHHHHHHHHT-----TSEEEEEE-SCSS
T ss_pred ccCCCCEEEEEccccc----------ccc-ccc---ccccHHHHHHHHHHHHHhhcc-----cCcEEEecCCCcc
Confidence 3567899999988421 111 111 122466788888888776532 2278887777653
No 47
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=25.60 E-value=52 Score=31.33 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=20.2
Q ss_pred hcCCeEEEEecchhHHHHHHHHhhhh
Q 024246 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (270)
Q Consensus 111 lrgK~l~FVGDSl~Rnq~~SLlClL~ 136 (270)
+.|++|+||||-.+ |...|++.++.
T Consensus 154 l~gl~ia~vGD~~~-~v~~Sl~~~~~ 178 (334)
T PRK01713 154 LSEISYVYIGDARN-NMGNSLLLIGA 178 (334)
T ss_pred cCCcEEEEECCCcc-CHHHHHHHHHH
Confidence 67899999999654 48888887775
No 48
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=25.02 E-value=75 Score=26.09 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.7
Q ss_pred CCeEEEEecchhH
Q 024246 113 GKRIMFVGDSLSL 125 (270)
Q Consensus 113 gK~l~FVGDSl~R 125 (270)
.+.++|||||.+=
T Consensus 162 ~~~~i~iGD~~~D 174 (188)
T TIGR01489 162 YQHIIYIGDGVTD 174 (188)
T ss_pred CceEEEECCCcch
Confidence 5689999999764
No 49
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=24.54 E-value=41 Score=33.64 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=26.2
Q ss_pred HHHHHhcCCeEEEEecchhHHH-HHHHHhhhhccc
Q 024246 106 DFLRRYRGKRIMFVGDSLSLNM-WESLSCMIHASV 139 (270)
Q Consensus 106 ~fL~~lrgK~l~FVGDSl~Rnq-~~SLlClL~~~~ 139 (270)
.+-+.++||||+.|=||+-|.- ...++.||..+-
T Consensus 341 pvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAG 375 (470)
T COG0034 341 PVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAG 375 (470)
T ss_pred chHHHhCCCeEEEEccccccCccHHHHHHHHHHhC
Confidence 3567789999999999998864 466777777443
No 50
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=24.05 E-value=37 Score=28.71 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEEeC
Q 024246 234 LEAFYKGMSTWARWVDLNVDPSQTKVFFQGI 264 (270)
Q Consensus 234 ~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~ 264 (270)
.+.|+..|+++++.+.+. .++.+|++-+.
T Consensus 101 ~~~~~~~l~~~i~~ir~~--~p~~~Ivv~~~ 129 (204)
T cd04506 101 EETYQNNLKKIFKEIRKL--NPDAPIFLVGL 129 (204)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCeEEEEec
Confidence 467888888888877642 23556666553
No 51
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=22.41 E-value=66 Score=30.74 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.4
Q ss_pred hcCCeEEEEecchhHHHHHHHHhhhh
Q 024246 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (270)
Q Consensus 111 lrgK~l~FVGDSl~Rnq~~SLlClL~ 136 (270)
++|++|++|||..+ |...|++.++.
T Consensus 154 l~gl~va~vGD~~~-~v~~S~~~~~~ 178 (334)
T PRK12562 154 FNEMTLVYAGDARN-NMGNSMLEAAA 178 (334)
T ss_pred cCCcEEEEECCCCC-CHHHHHHHHHH
Confidence 57899999999864 48888888775
No 52
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=22.38 E-value=77 Score=27.12 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=23.1
Q ss_pred CChHHHHHHhcCCeEEEEecchhHHHHHHHHhhhhc
Q 024246 102 FDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHA 137 (270)
Q Consensus 102 fd~~~fL~~lrgK~l~FVGDSl~Rnq~~SLlClL~~ 137 (270)
-..+++.+.++||+++|+|-|=.-- -||+-.|..
T Consensus 24 ~g~~~l~~~l~~k~~vl~G~SGvGK--SSLiN~L~~ 57 (161)
T PF03193_consen 24 EGIEELKELLKGKTSVLLGQSGVGK--SSLINALLP 57 (161)
T ss_dssp TTHHHHHHHHTTSEEEEECSTTSSH--HHHHHHHHT
T ss_pred cCHHHHHHHhcCCEEEEECCCCCCH--HHHHHHHHh
Confidence 3456788999999999999873321 245554443
No 53
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=22.38 E-value=63 Score=30.91 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=20.3
Q ss_pred hcCCeEEEEecchhHHHHHHHHhhhh
Q 024246 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (270)
Q Consensus 111 lrgK~l~FVGDSl~Rnq~~SLlClL~ 136 (270)
+.|++|+||||-..=|...|++.+|.
T Consensus 157 l~g~kia~vGD~~~~rv~~Sl~~~l~ 182 (338)
T PRK08192 157 IDGMHIAMVGDLKFGRTVHSLSRLLC 182 (338)
T ss_pred cCCCEEEEECcCCCCchHHHHHHHHH
Confidence 68899999999754467788776654
No 54
>PF14647 FAM91_N: FAM91 N-terminus
Probab=22.07 E-value=84 Score=29.87 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=24.7
Q ss_pred CCCCChHHHHHHhcCCeEEEEecchhHHHHHHHHhhhhcc
Q 024246 99 VPRFDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHAS 138 (270)
Q Consensus 99 Lprfd~~~fL~~lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 138 (270)
||-|.|+|.|++|. ++||||-.|+.-..+.
T Consensus 109 LPNFTAaD~LRllG----------IGRNqYIdlmn~~RS~ 138 (308)
T PF14647_consen 109 LPNFTAADCLRLLG----------IGRNQYIDLMNKCRSK 138 (308)
T ss_pred CCCCcHHHHHHHhc----------chHHHHHHHHHHhchh
Confidence 99999999998763 7899999888766543
No 55
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.92 E-value=2.6e+02 Score=28.10 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CCCceEEEEeCCCCCC
Q 024246 234 LEAFYKGMSTWARWVDLNVD-PSQTKVFFQGISPTHY 269 (270)
Q Consensus 234 ~~A~r~Al~t~~~wi~~~~~-~~k~~VffRT~SP~Hf 269 (270)
..|.+++++.+.+...+.-+ ..+++|++.|+.|+|.
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~ 384 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHP 384 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCH
Confidence 45778888888776554323 2468999999999994
No 56
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=21.91 E-value=81 Score=23.27 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=19.6
Q ss_pred ccchHHHHHHHHHHHHHhhhhhhh
Q 024246 3 FGSHVLLFWLFQFVLLSSMLLKEA 26 (270)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (270)
|+-.++.+.+++.++|||.+.+..
T Consensus 8 f~LnGi~G~LIAvvLLLsIl~~lt 31 (66)
T PF13179_consen 8 FGLNGITGMLIAVVLLLSILAFLT 31 (66)
T ss_pred eeecchHhHHHHHHHHHHHHHHHH
Confidence 455688999999999999877665
No 57
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=20.79 E-value=75 Score=31.79 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=17.8
Q ss_pred HHHHhcCCeEEEEecchhHHHHHHHHhhhh
Q 024246 107 FLRRYRGKRIMFVGDSLSLNMWESLSCMIH 136 (270)
Q Consensus 107 fL~~lrgK~l~FVGDSl~Rnq~~SLlClL~ 136 (270)
..+.|+||+++++||+- .-.+|+..|.
T Consensus 308 ~~~~L~GKrvai~Gdp~---~~i~LarfL~ 334 (457)
T CHL00073 308 YLDLVRGKSVFFMGDNL---LEISLARFLI 334 (457)
T ss_pred HHHHHCCCEEEEECCCc---HHHHHHHHHH
Confidence 34458999999999963 2344444443
No 58
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=20.72 E-value=73 Score=29.89 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=21.6
Q ss_pred HHhcCCeEEEEecchhHHHHHHHHhhhh
Q 024246 109 RRYRGKRIMFVGDSLSLNMWESLSCMIH 136 (270)
Q Consensus 109 ~~lrgK~l~FVGDSl~Rnq~~SLlClL~ 136 (270)
..++|++|+||||...-|...|++-++.
T Consensus 146 g~l~g~~va~vGD~~~~~v~~Sl~~~~a 173 (301)
T TIGR00670 146 GRLDGLKIALVGDLKYGRTVHSLAEALT 173 (301)
T ss_pred CCCCCCEEEEEccCCCCcHHHHHHHHHH
Confidence 3489999999999764467777777664
No 59
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=20.29 E-value=79 Score=31.39 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.3
Q ss_pred hcCCeEEEEecchhHHHHHHHHhhhh
Q 024246 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (270)
Q Consensus 111 lrgK~l~FVGDSl~Rnq~~SLlClL~ 136 (270)
++|++|+||||-..=|...|++.++.
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la 264 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLA 264 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHH
Confidence 67899999999854467788877753
No 60
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.27 E-value=3.9e+02 Score=20.37 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=31.9
Q ss_pred CCCceEEEEeCcccccccCCCCCcceecCCccccccCChHHHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC
Q 024246 195 WKDMDVLIFNSWHWWTHTGKAQPWDYIQDGQTLLKDMDRLEAFYKGMSTWARWVDLNVDPSQTKVFFQGISPT 267 (270)
Q Consensus 195 ~~~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~Al~t~~~wi~~~~~~~k~~VffRT~SP~ 267 (270)
...+|+||+..|..-..... ......+...++.+++.+.+ ..++.+|++-+..|.
T Consensus 63 ~~~~d~vil~~G~ND~~~~~----------------~~~~~~~~~~~~~~i~~~~~--~~~~~~vv~~~~~~~ 117 (187)
T cd00229 63 KDKPDLVIIELGTNDLGRGG----------------DTSIDEFKANLEELLDALRE--RAPGAKVILITPPPP 117 (187)
T ss_pred cCCCCEEEEEeccccccccc----------------ccCHHHHHHHHHHHHHHHHH--HCCCCcEEEEeCCCC
Confidence 46689999999887652210 11234555566666655543 234556666666553
Done!