BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024247
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1
SV=1
Length = 261
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 141/251 (56%), Gaps = 18/251 (7%)
Query: 18 LRRVAPFCSSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTV 77
++R A SSS RF +SD G SAVY HA F++P + K + L NSV+ +G V
Sbjct: 11 IQRTASQISSSFPKSRF---FSD---GESAVYHHARLFKKPLSTKLKFNLVNSVSLMGFV 64
Query: 78 VRPLERSNV----FGVYTLLHVKNS-HSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTG 132
R ++ N FGV+T+L VK+ + +R F I L + MA+ C HLK ND I V+G
Sbjct: 65 DRSIQVMNTGPDRFGVFTILRVKDPLNPNRSFRISLRMWDAMARTCIAHLKLNDHILVSG 124
Query: 133 QLHSYSKV--DKNGKLCLCYKVVVEDFNYVREC-GQGLAFKKSVESKSRGGEAGMEKYEN 189
+L SYSK D L L Y+V V + NYV L + S K++ + E ++
Sbjct: 125 RLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAPPSHVLDSQISKNPKTKTEDDIEESKKD 184
Query: 190 RFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMM 249
YLW V+F+NPY+WWDNR+NK P PDFKHK TGEALWL P W+ ++L+ D
Sbjct: 185 EIYLWQVFFSNPYDWWDNRRNKKNPKQPDFKHKDTGEALWLCSDLPDWITRRLELFDQKN 244
Query: 250 ----EERGSRD 256
EE+ RD
Sbjct: 245 RFYDEEKTRRD 255
>sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1
SV=2
Length = 371
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 20/211 (9%)
Query: 54 KFQRPTTIKWQPQLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSHSDRGFDILLA 109
+ RP I ++ ++ N VN IG V +P++ F T++ +++ GF I +
Sbjct: 84 ELPRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQRSASDSSGFWIPII 143
Query: 110 VGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLAF 169
GD+A+ +++ +D I+V+G+L S +V+V++ N+++ +
Sbjct: 144 FEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSPSPS- 202
Query: 170 KKSVESKSRGGEAGMEKYENRFYL----------WHVYFANPYEWWDNRKNK----LYPG 215
V S S E+G++K R W+ NP EWWD+R+NK + P
Sbjct: 203 PFMVMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGLVKPR 262
Query: 216 APDFKHKSTGEALWLDPKDPPWVKKQLQRID 246
PDFK K + +LWL+ K P WV +L+ ++
Sbjct: 263 HPDFKSKDSSFSLWLN-KAPNWVLPKLEGLE 292
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 194 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMME 250
W NP +WWDNR +K APDFKHK TGEALWL+ + P WV +L + E
Sbjct: 312 WKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLN-ESPTWVLPKLPPVKKKQE 367
>sp|Q8GWJ4|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=OSB3 PE=2 SV=1
Length = 440
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 17/225 (7%)
Query: 58 PTTIKWQPQLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSHSDRGFDILLAVGGD 113
P I+++P++ N +N IG V +P++ F T++ ++ F I + GD
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 114 MAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLAF---- 169
+A++ +H+K D I+V+G+L S +V+V++ N+V+
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190
Query: 170 KKSVES-KSRGGEAGMEKY--ENRFYLWHVYFANPYEWWDNRKNK----LYPGAPDFKHK 222
+K V S K + + K E W NP EW D+R NK + PG PDFK K
Sbjct: 191 EKEVTSIKKKPARSKKVKVIDEETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDFKMK 250
Query: 223 STGEALWLDPKDPPWVKKQLQRID-SMMEERGSRDLGSLSRVSTW 266
G +LWL P W +L+ + ++ +G+ L L +W
Sbjct: 251 VGGLSLWLS-TAPDWALLKLEELKFDVLVPKGNIKLNQLKGEESW 294
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 183 GMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQL 242
G K R +W NP +WWDNR +K P PDFKHK TGEALW+ P W +L
Sbjct: 369 GNLKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIG-DSPTWALSKL 427
Query: 243 QRIDSMME 250
+ E
Sbjct: 428 PPLKKNQE 435
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 194 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMME 250
W NP +W DNR +K PDFKHK TGEALW+ P WV +L + E
Sbjct: 294 WKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMT-NSPIWVLSKLPPLKKNQE 349
>sp|Q9FYJ2|OSB4_ARATH Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2
SV=1
Length = 360
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 44/215 (20%)
Query: 54 KFQRPTTIKWQPQLENSVNFIGTVVRPLERSNVFGVYTLLHVKNSHS-----------DR 102
++ RP + +QP++ NS++ IG V +P++ + SH
Sbjct: 58 EWPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSS 117
Query: 103 GFDILLAVGGDMAQLCQKHLKPNDFIYVTGQL------------HSYSKVDKNGKLCLCY 150
F I + GD+A +LK ND +++TGQ+ ++ ++ K+ +
Sbjct: 118 NFWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGSFSH 177
Query: 151 KVVVEDFNYVR----------ECGQGLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFAN 200
+V+V D +Y+ Q K S RG E G LW
Sbjct: 178 QVMVRDLHYIEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGTN-------LWFDLVDK 230
Query: 201 PYEWWDNRKNK----LYPGAPDFKHKSTGEALWLD 231
P EW D R+ K + P PDFK K +ALWL+
Sbjct: 231 PNEWCDYREMKQNGSVNPKHPDFKKKDGSQALWLN 265
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 194 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQL 242
W N +WWDNR +K P +PDFKHK TG LWL P WV ++L
Sbjct: 296 WKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLS-DSPSWVLEKL 343
>sp|Q87LA3|SSB_VIBPA Single-stranded DNA-binding protein OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=ssb PE=3 SV=1
Length = 176
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 112 GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLA 168
G +A++ ++L+ +YV GQL + D++G+ +VVV+ FN V + G A
Sbjct: 62 GKLAEVAGEYLRKGSQVYVEGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRA 118
>sp|Q8DCJ0|SSB_VIBVU Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain
CMCP6) GN=ssb PE=3 SV=1
Length = 179
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 112 GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 163
G +A++ ++L+ +Y+ GQL + D+NG+ +VVV+ +N + +
Sbjct: 62 GKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQM 113
>sp|B4MR33|EI3F2_DROWI Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila willistoni GN=eIF3-S5-2 PE=3 SV=1
Length = 286
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 81 LERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFI--YVTGQLHSYS 138
LE SN F TLLH +SDR D+ L DM +L Q I Y TG+ S S
Sbjct: 50 LEISNCF---TLLHKDYPNSDR-IDVDLQYANDMYELNQLTYPQEKIIGWYATGKEVSRS 105
Query: 139 KVDKNGKLCLCYKVVVEDFNYVRECGQGLAFKKSVESKSRGGEAGMEKY 187
V+ + ++ Y REC G +++ RG M Y
Sbjct: 106 AVN------------LHEY-YARECADGNPMHLLIDTSLRGQRMMMRLY 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,129,047
Number of Sequences: 539616
Number of extensions: 4677040
Number of successful extensions: 8481
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8462
Number of HSP's gapped (non-prelim): 13
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)