Query 024247
Match_columns 270
No_of_seqs 220 out of 1052
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:56:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vdy_A SSB, single-stranded DN 100.0 2.1E-28 7.2E-33 197.1 13.8 100 66-165 3-111 (116)
2 3koj_A Uncharacterized protein 100.0 1.4E-28 4.6E-33 198.3 11.0 92 66-158 9-107 (108)
3 3ull_A DNA binding protein; DN 99.9 1.4E-27 4.7E-32 196.9 10.8 100 66-165 12-129 (132)
4 2vw9_A Single-stranded DNA bin 99.9 4E-27 1.4E-31 195.1 13.2 99 67-165 1-110 (134)
5 3ulp_A Single-strand binding p 99.9 3.5E-27 1.2E-31 192.4 12.1 100 66-165 4-122 (124)
6 1qvc_A Single stranded DNA bin 99.9 1.9E-26 6.3E-31 193.4 13.8 101 66-166 3-118 (145)
7 1z9f_A Single-strand binding p 99.9 7.9E-27 2.7E-31 197.9 11.4 100 66-165 14-124 (153)
8 3tqy_A Single-stranded DNA-bin 99.9 3.2E-26 1.1E-30 194.8 13.4 100 66-165 6-117 (158)
9 3lgj_A Single-stranded DNA-bin 99.9 3.6E-26 1.2E-30 196.7 12.5 101 66-166 21-138 (169)
10 4dam_A Single-stranded DNA-bin 99.9 1.8E-25 6.2E-30 184.5 11.6 92 67-160 14-118 (128)
11 3pgz_A Single-stranded DNA-bin 99.9 3.2E-25 1.1E-29 194.8 13.0 100 67-166 25-141 (193)
12 1eqq_A Single stranded DNA bin 99.9 8.6E-26 3E-30 195.7 8.6 100 66-165 4-118 (178)
13 3afp_A Single-stranded DNA-bin 99.9 3.6E-25 1.2E-29 190.0 12.1 98 67-164 3-117 (168)
14 1txy_A Primosomal replication 99.9 1.3E-25 4.4E-30 178.4 7.1 92 67-163 1-103 (104)
15 4gs3_A Single-stranded DNA-bin 99.9 3.8E-25 1.3E-29 178.2 9.7 91 68-161 11-106 (107)
16 3k7u_C MP18 RNA editing comple 99.9 7.2E-25 2.5E-29 185.3 11.3 99 67-165 5-119 (148)
17 2fxq_A Single-strand binding p 99.9 4.2E-24 1.4E-28 193.7 14.3 100 66-166 126-233 (264)
18 1v1q_A Primosomal replication 99.9 9.8E-25 3.4E-29 181.9 8.3 94 67-164 18-121 (134)
19 3eiv_A Single-stranded DNA-bin 99.9 1.1E-23 3.9E-28 185.8 13.1 94 67-160 3-109 (199)
20 3k81_C MP18 RNA editing comple 99.9 5.6E-24 1.9E-28 182.7 10.1 100 65-165 19-135 (164)
21 1se8_A Single-strand binding p 99.9 2.4E-23 8.1E-28 193.1 12.7 100 66-165 3-114 (301)
22 2fxq_A Single-strand binding p 99.9 3E-23 1E-27 188.1 9.8 97 67-164 4-111 (264)
23 3fhw_A Primosomal replication 99.9 1.2E-22 4.2E-27 165.3 10.2 91 68-165 1-101 (115)
24 1se8_A Single-strand binding p 99.9 1.2E-22 4.2E-27 188.3 11.3 100 66-166 127-237 (301)
25 3k8a_A Putative primosomal rep 99.8 2E-21 7E-26 155.0 8.6 86 68-161 7-102 (103)
26 4dni_A Fusion protein of RNA-e 99.8 4.1E-21 1.4E-25 175.1 10.3 84 68-154 146-243 (257)
27 3stb_C RNA-editing complex pro 99.8 9.2E-19 3.2E-23 148.0 12.3 88 66-154 42-137 (148)
28 4dni_A Fusion protein of RNA-e 99.8 3.5E-19 1.2E-23 162.4 10.2 92 66-161 28-128 (257)
29 3en2_A Probable primosomal rep 99.8 3.6E-19 1.2E-23 141.9 6.6 74 68-142 2-85 (101)
30 4dka_C RNA-editing complex pro 97.4 0.00068 2.3E-08 54.1 8.3 73 69-142 4-81 (105)
31 3dm3_A Replication factor A; p 95.1 0.062 2.1E-06 42.1 7.0 77 69-162 15-99 (105)
32 3e0e_A Replication protein A; 94.9 0.21 7.3E-06 38.2 9.5 75 69-161 12-94 (97)
33 2k50_A Replication factor A re 93.1 0.26 8.7E-06 38.2 6.9 64 69-139 17-88 (115)
34 2hql_A Hypothetical protein Mg 91.3 1.2 4.1E-05 34.8 8.5 87 66-156 6-95 (110)
35 1ynx_A Replication factor-A pr 90.2 0.65 2.2E-05 36.3 6.3 60 67-132 13-79 (114)
36 1o7i_A SSB, SSO2364, single st 88.9 1.3 4.6E-05 34.6 7.2 59 68-136 12-78 (119)
37 1eov_A ASPRS, aspartyl-tRNA sy 87.2 5.2 0.00018 38.9 11.7 88 69-164 37-131 (487)
38 3kdf_D Replication protein A 3 87.0 2.3 7.9E-05 33.8 7.7 88 59-163 22-112 (132)
39 4gop_B Putative uncharacterize 84.4 7 0.00024 31.1 9.4 88 59-163 27-117 (136)
40 2k75_A Uncharacterized protein 83.5 3.7 0.00013 31.7 7.1 56 68-136 13-75 (106)
41 3au7_A TIAS, putative uncharac 82.7 7.5 0.00026 37.3 10.2 77 66-163 282-362 (402)
42 3bju_A Lysyl-tRNA synthetase; 82.0 8.1 0.00028 37.9 10.5 80 70-164 57-142 (521)
43 2xgt_A Asparaginyl-tRNA synthe 79.9 8.6 0.0003 36.7 9.7 82 70-162 13-96 (435)
44 2vl6_A SSO MCM N-TER, minichro 79.6 5.1 0.00018 35.4 7.5 54 104-161 211-266 (268)
45 3kf6_A Protein STN1; OB fold, 78.8 17 0.00057 30.3 10.0 86 63-164 42-130 (159)
46 3m4p_A Ehasnrs, asparaginyl-tR 77.2 11 0.00039 36.2 9.7 88 69-164 31-123 (456)
47 3nem_A Aspartyl-tRNA synthetas 75.7 24 0.00082 33.8 11.4 82 69-164 17-102 (438)
48 1jmc_A Protein (replication pr 74.6 8.4 0.00029 33.1 7.3 59 68-132 18-83 (246)
49 2hpi_A DNA polymerase III alph 73.6 4.8 0.00016 43.7 6.5 77 70-162 1044-1123(1220)
50 1l0w_A Aspartyl-tRNA synthetas 72.7 8.1 0.00028 38.5 7.5 83 70-164 18-104 (580)
51 4ex5_A Lysine--tRNA ligase; st 72.6 25 0.00085 34.7 10.9 79 70-164 88-170 (529)
52 3a74_A Lysyl-tRNA synthetase; 71.6 21 0.00073 34.7 10.1 79 70-164 58-140 (493)
53 1n9w_A Aspartyl-tRNA synthetas 71.5 23 0.00079 33.7 10.1 74 69-163 14-88 (422)
54 1x54_A Asparaginyl-tRNA synthe 70.5 29 0.001 33.0 10.6 81 69-163 17-101 (434)
55 1wyd_A Hypothetical aspartyl-t 70.3 21 0.00073 34.0 9.6 80 69-163 17-98 (429)
56 1c0a_A Aspartyl tRNA synthetas 70.2 11 0.00039 37.4 7.9 83 70-164 17-106 (585)
57 3i7f_A Aspartyl-tRNA synthetas 68.8 22 0.00074 35.3 9.5 88 69-165 63-155 (548)
58 4gop_C Putative uncharacterize 67.9 12 0.00041 35.3 7.3 60 68-133 13-79 (444)
59 1e1o_A Lysyl-tRNA synthetase, 67.7 25 0.00085 34.3 9.6 79 70-164 66-149 (504)
60 2pi2_A Replication protein A 3 67.4 17 0.00059 32.2 7.9 82 66-164 69-153 (270)
61 3kf8_A Protein STN1; OB fold; 66.7 21 0.00072 31.6 8.1 100 61-163 78-185 (220)
62 3f2b_A DNA-directed DNA polyme 64.0 51 0.0017 35.2 11.7 83 66-162 15-103 (1041)
63 1jmc_A Protein (replication pr 59.7 28 0.00097 29.7 7.6 59 70-133 140-205 (246)
64 1ltl_A DNA replication initiat 58.1 14 0.00048 32.9 5.4 51 104-161 198-248 (279)
65 2kbn_A Conserved protein; nucl 57.2 28 0.00095 26.7 6.4 60 68-136 15-76 (109)
66 4hik_A Protection of telomeres 55.1 9.1 0.00031 31.6 3.4 60 68-131 14-92 (143)
67 4gop_C Putative uncharacterize 38.0 35 0.0012 32.1 4.9 61 70-133 135-204 (444)
68 4ah6_A Aspartate--tRNA ligase, 36.0 54 0.0019 32.9 6.2 80 70-164 26-114 (617)
69 1wjj_A Hypothetical protein F2 30.4 60 0.002 26.6 4.6 57 68-134 26-99 (145)
70 1nvp_D Transcription initiatio 22.3 2.7E+02 0.0094 21.7 6.8 41 114-162 43-83 (108)
No 1
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.96 E-value=2.1e-28 Score=197.12 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=87.4
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC-----CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeee
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH-----SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHS 136 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~-----~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t 136 (270)
.|||+|+|+|||++||| ++|..++.|+||+++.+ +.+++||+|++||++||.+++||+||++|+|+|+|++
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 59999999999999999 78999999999998754 2478999999999999999999999999999999999
Q ss_pred cceecCCCcEEEEEEEEEEEEEeeecCCC
Q 024247 137 YSKVDKNGKLCLCYKVVVEDFNYVRECGQ 165 (270)
Q Consensus 137 ~sy~dkdG~kr~~~eVvV~~v~Fl~~~~q 165 (270)
++|+|+||++++.++|+|++|+||+++++
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~~~ 111 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPKPR 111 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC----
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCCCc
Confidence 99999999999999999999999988754
No 2
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.95 E-value=1.4e-28 Score=198.34 Aligned_cols=92 Identities=20% Similarity=0.145 Sum_probs=76.9
Q ss_pred CCcceEEEEEEcCCCCc----cCC-eeEEEEEEEEcCCC--CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeecc
Q 024247 66 QLENSVNFIGTVVRPLE----RSN-VFGVYTLLHVKNSH--SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYS 138 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G-~~va~fsLAV~~~~--~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~s 138 (270)
.-||+|+|||||++||| ++| +.+|.|+||++ ++ .++++||+|++||++||.|++||+|||+|+|+|+|++++
T Consensus 9 ~~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~-~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~ 87 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFP-GLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINS 87 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEEC-C-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC
T ss_pred cccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEEC-CcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeee
Confidence 35899999999999999 777 89999999999 44 458999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEEEEEEEEE
Q 024247 139 KVDKNGKLCLCYKVVVEDFN 158 (270)
Q Consensus 139 y~dkdG~kr~~~eVvV~~v~ 158 (270)
|+|+||++++.+||+|++|.
T Consensus 88 y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 88 LLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp --------CCEEEEEEEEEE
T ss_pred EECCCCCEEEEEEEEEEEEE
Confidence 99999999999999999875
No 3
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.95 E-value=1.4e-27 Score=196.87 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=89.1
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC-------------CCCCeeEEEEEec-hhHHHHHhhcCCCCe
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH-------------SDRGFDILLAVGG-DMAQLCQKHLKPNDF 127 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~-------------~~~t~wI~Vv~wG-kLAE~~~~yLkKGd~ 127 (270)
++||+|+|+|||++||| ++|..++.|+||+++.+ .+.++||+|++|| ++||.+++||+||++
T Consensus 12 ~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG~~ 91 (132)
T 3ull_A 12 RSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSR 91 (132)
T ss_dssp CCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCE
T ss_pred hcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCCCE
Confidence 57999999999999999 78999999999998642 1368999999999 599999999999999
Q ss_pred EEEEEEeeecceecCCCcEEEEEEEEEEEEEeeecCCC
Q 024247 128 IYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 165 (270)
Q Consensus 128 V~VsGrL~t~sy~dkdG~kr~~~eVvV~~v~Fl~~~~q 165 (270)
|+|+|+|++++|+|+||++++.++|+|++|.||+.+++
T Consensus 92 V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~k 129 (132)
T 3ull_A 92 IYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTK 129 (132)
T ss_dssp EEEEEEEECCCEESSSSEECCCEEEEEEEEECC-----
T ss_pred EEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCCc
Confidence 99999999999999999999999999999999987653
No 4
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.94 E-value=4e-27 Score=195.06 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=91.1
Q ss_pred CcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC-------CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEee
Q 024247 67 LENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH-------SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLH 135 (270)
Q Consensus 67 l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~-------~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~ 135 (270)
|||+|+|+|||++||| ++|+.++.|+||+++++ .+.++||+|++||++||.+++||+||++|+|+|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~ 80 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEE
Confidence 6899999999999999 78999999999998643 126899999999999999999999999999999999
Q ss_pred ecceecCCCcEEEEEEEEEEEEEeeecCCC
Q 024247 136 SYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 165 (270)
Q Consensus 136 t~sy~dkdG~kr~~~eVvV~~v~Fl~~~~q 165 (270)
+++|+|+||++++.++|+|++|.||..+..
T Consensus 81 ~~~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 110 (134)
T 2vw9_A 81 YESWMDQTGKKNSRHTITADSLQFMDKKSD 110 (134)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEECCCC--
T ss_pred eeeEECCCCCEEEEEEEEEEEEEEccCCcc
Confidence 999999999999999999999999987654
No 5
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.94 E-value=3.5e-27 Score=192.39 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=88.4
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC--------CCCCeeEEEEEec-hhHHHHHhhcCCCCeEEEEE
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH--------SDRGFDILLAVGG-DMAQLCQKHLKPNDFIYVTG 132 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~--------~~~t~wI~Vv~wG-kLAE~~~~yLkKGd~V~VsG 132 (270)
++||+|+|+|||++||| ++|+.++.|+||+++.+ .+.++||+|++|| ++||.+++||+||++|+|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEE
Confidence 68999999999999999 78999999999998642 1378999999999 99999999999999999999
Q ss_pred EeeecceecC--CCcEEEEEEEEEE----EEEeeecCCC
Q 024247 133 QLHSYSKVDK--NGKLCLCYKVVVE----DFNYVRECGQ 165 (270)
Q Consensus 133 rL~t~sy~dk--dG~kr~~~eVvV~----~v~Fl~~~~q 165 (270)
+|++++|+|+ ||++++.++|+|+ +|.||++++.
T Consensus 84 ~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~ 122 (124)
T 3ulp_A 84 SLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRN 122 (124)
T ss_dssp EEEEEEECC----CCCEEEEEEEECTTTCEEEECC----
T ss_pred EEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCC
Confidence 9999999999 9999999999998 9999988753
No 6
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.94 E-value=1.9e-26 Score=193.37 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=93.6
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC--------CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH--------SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQ 133 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~--------~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGr 133 (270)
+|||+|+|+|||++||| ++|+.++.|+||+++.+ .+.++||+|++|+++||.+++||+||++|+|+|+
T Consensus 3 ~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 3 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp CCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred CceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEE
Confidence 68999999999999999 78999999999998643 1368999999999999999999999999999999
Q ss_pred eeecceecCCCcEEEEEEE---EEEEEEeeecCCCC
Q 024247 134 LHSYSKVDKNGKLCLCYKV---VVEDFNYVRECGQG 166 (270)
Q Consensus 134 L~t~sy~dkdG~kr~~~eV---vV~~v~Fl~~~~q~ 166 (270)
|++++|+|+||++++.++| +|++|.||..+...
T Consensus 83 L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~~~~ 118 (145)
T 1qvc_A 83 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 118 (145)
T ss_dssp EEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred EEeeEEECCCCcEEEEEEEeeeEeCEEEEccCCCcC
Confidence 9999999999999999999 99999999877543
No 7
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=7.9e-27 Score=197.85 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcC-CC-----CC-CCeeEEEEEechhHHHHHhhcCCCCeEEEEEEe
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKN-SH-----SD-RGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQL 134 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~-~~-----~~-~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL 134 (270)
.++|+|+|+||||+||| ++|+.+|.|+||+++ ++ +. +++||+|++||++||.+++||+||++|+|+|+|
T Consensus 14 ~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL 93 (153)
T 1z9f_A 14 SFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEM 93 (153)
T ss_dssp SCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred cceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEEEE
Confidence 38999999999999999 789999999999997 54 12 289999999999999999999999999999999
Q ss_pred eecceecCCCcEEEEEEEEEEEEEeeecCCC
Q 024247 135 HSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 165 (270)
Q Consensus 135 ~t~sy~dkdG~kr~~~eVvV~~v~Fl~~~~q 165 (270)
++++|+|++|++++.++|+|++|.||..+.+
T Consensus 94 ~~~~~~dkdG~~r~~~eV~a~~i~~l~~~~~ 124 (153)
T 1z9f_A 94 RMRRWETPTGEKRVSPEVVANVVRFMDRKPA 124 (153)
T ss_dssp EEEC-------CCCEEEEEEEEEEECC----
T ss_pred EeceEECCCCCEEEEEEEEEEEEEEccCCCc
Confidence 9999999999999999999999999987654
No 8
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.94 E-value=3.2e-26 Score=194.79 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=89.7
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC--------CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH--------SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQ 133 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~--------~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGr 133 (270)
+.||+|+|||||++||| ++|+.++.|+||+++.+ .+.++||+|++||++||.+++||+||++|+|+|+
T Consensus 6 ~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG~ 85 (158)
T 3tqy_A 6 RGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIEGS 85 (158)
T ss_dssp SCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred cccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEEEE
Confidence 45899999999999999 78999999999997543 1258999999999999999999999999999999
Q ss_pred eeecceecCCCcEEEEEEEEEEEEEeeecCCC
Q 024247 134 LHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 165 (270)
Q Consensus 134 L~t~sy~dkdG~kr~~~eVvV~~v~Fl~~~~q 165 (270)
|++++|+|+||++++.++|+|++|.||..+..
T Consensus 86 L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~~ 117 (158)
T 3tqy_A 86 LRTRKWQDKNGVDRYTTEIIANEMHMLDNRGG 117 (158)
T ss_dssp EEEEEEECSSSCEEEEEEEEEEEEEECC----
T ss_pred EEeeeEECCCCCEEEEEEEEEeEEEEccCCcc
Confidence 99999999999999999999999999987764
No 9
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.93 E-value=3.6e-26 Score=196.75 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=81.8
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC--------CCCCeeEEEEEech-hHHHHHhhcCCCCeEEEEE
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH--------SDRGFDILLAVGGD-MAQLCQKHLKPNDFIYVTG 132 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~--------~~~t~wI~Vv~wGk-LAE~~~~yLkKGd~V~VsG 132 (270)
.|||+|+||||||+||| ++|+.++.|+||+++++ .+.|+||+|++||+ +||.+++||+||++|+|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE
Confidence 68999999999999999 78999999999998753 13689999999999 9999999999999999999
Q ss_pred EeeecceecCCCcEEEEEEEEE----EEEEeeecCCCC
Q 024247 133 QLHSYSKVDKNGKLCLCYKVVV----EDFNYVRECGQG 166 (270)
Q Consensus 133 rL~t~sy~dkdG~kr~~~eVvV----~~v~Fl~~~~q~ 166 (270)
+|++++|+|+||++++.++|+| ++|.||+.++..
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k~~~ 138 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQ 138 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC----
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCCCcc
Confidence 9999999999999999999998 589999987654
No 10
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.92 E-value=1.8e-25 Score=184.47 Aligned_cols=92 Identities=14% Similarity=0.048 Sum_probs=85.1
Q ss_pred CcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC------C---CCCeeEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 024247 67 LENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH------S---DRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQ 133 (270)
Q Consensus 67 l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~------~---~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGr 133 (270)
.+|+|+|+||||+||| ++| .+|.|+||+++.+ + .+|+||+|++||++||.+++||+||++|+|+|+
T Consensus 14 ~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 92 (128)
T 4dam_A 14 NEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGR 92 (128)
T ss_dssp CCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEE
Confidence 5899999999999999 889 9999999998642 1 278999999999999999999999999999999
Q ss_pred eeecceecCCCcEEEEEEEEEEEEEee
Q 024247 134 LHSYSKVDKNGKLCLCYKVVVEDFNYV 160 (270)
Q Consensus 134 L~t~sy~dkdG~kr~~~eVvV~~v~Fl 160 (270)
|++++| |+||++++.++|+|++|..-
T Consensus 93 L~~~~~-dkdG~~r~~~ev~a~~vg~d 118 (128)
T 4dam_A 93 LKVRTD-VREGQSRTSADIDAVAIGHD 118 (128)
T ss_dssp EEEEEE-EETTEEEEEEEEEEEEEEEC
T ss_pred EEEeEE-cCCCCEEEEEEEEEEEEEec
Confidence 999999 99999999999999998754
No 11
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.92 E-value=3.2e-25 Score=194.83 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=88.6
Q ss_pred CcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC--------CCCCeeEEEEEech-hHHHHHhhcCCCCeEEEEEE
Q 024247 67 LENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH--------SDRGFDILLAVGGD-MAQLCQKHLKPNDFIYVTGQ 133 (270)
Q Consensus 67 l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~--------~~~t~wI~Vv~wGk-LAE~~~~yLkKGd~V~VsGr 133 (270)
.||+|+|||||++||| ++|+.+|.|+||+++.+ .+.|+||+|++|++ +||.|++||+||++|+|+|+
T Consensus 25 ~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeGr 104 (193)
T 3pgz_A 25 SLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQ 104 (193)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEE
T ss_pred hcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEEE
Confidence 5899999999999999 78999999999998643 12689999999996 99999999999999999999
Q ss_pred eeecceecCCCcEEEEEEEEEE----EEEeeecCCCC
Q 024247 134 LHSYSKVDKNGKLCLCYKVVVE----DFNYVRECGQG 166 (270)
Q Consensus 134 L~t~sy~dkdG~kr~~~eVvV~----~v~Fl~~~~q~ 166 (270)
|++++|+|+||++++.++|+|+ +|.||+++...
T Consensus 105 L~trswedkdG~kr~~tEVva~~~~~~i~fL~sk~~~ 141 (193)
T 3pgz_A 105 LQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRAAA 141 (193)
T ss_dssp EEEEEEECTTSCEEEEEEEEECTTCCEEEECC-----
T ss_pred EEEEEeECCCCCEEEEEEEEEEeccCceEECcCCCCC
Confidence 9999999999999999999999 78999987643
No 12
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.92 E-value=8.6e-26 Score=195.70 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=90.8
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC--------CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH--------SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQ 133 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~--------~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGr 133 (270)
++||+|+|||||++||| ++|+.++.|+||+++.+ .+.++||+|++||++||.|++||+||++|+|+|+
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEE
Confidence 47999999999999999 78999999999998643 1358999999999999999999999999999999
Q ss_pred eeecceecCCCcEEEEEEE---EEEEEEeeecCCC
Q 024247 134 LHSYSKVDKNGKLCLCYKV---VVEDFNYVRECGQ 165 (270)
Q Consensus 134 L~t~sy~dkdG~kr~~~eV---vV~~v~Fl~~~~q 165 (270)
|++++|+|+||++++.++| +|++|.||..+..
T Consensus 84 L~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~~~~ 118 (178)
T 1eqq_A 84 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118 (178)
T ss_dssp EEEEEEECSSSEEEEEEEEECSSSCCEECSCC---
T ss_pred EEeeeEECCCCCEEEEEEEeeeecCeEEEccccCC
Confidence 9999999999999999999 9999999987654
No 13
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.92 E-value=3.6e-25 Score=190.05 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=87.0
Q ss_pred CcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC--------C-CCCeeEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 024247 67 LENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH--------S-DRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQ 133 (270)
Q Consensus 67 l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~--------~-~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGr 133 (270)
.+|+|+|||||++||| ++|+.++.|+||+++++ . .+++||+|++|+++||.|++||+||++|+|+|+
T Consensus 3 ~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 82 (168)
T 3afp_A 3 GDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGR 82 (168)
T ss_dssp CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEE
Confidence 4899999999999999 78999999999997532 1 269999999999999999999999999999999
Q ss_pred eeecceecCCCcEEEEEEEEEE----EEEeeecCC
Q 024247 134 LHSYSKVDKNGKLCLCYKVVVE----DFNYVRECG 164 (270)
Q Consensus 134 L~t~sy~dkdG~kr~~~eVvV~----~v~Fl~~~~ 164 (270)
|++++|+|+||++++.++|+|+ +|.|+..+.
T Consensus 83 L~~~~~~dkdG~~r~~~ev~a~~v~~~l~~l~~~~ 117 (168)
T 3afp_A 83 LKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKV 117 (168)
T ss_dssp EEEEEEC-CCSCCEEEEEEEEEEEEECCSSEEEEE
T ss_pred EEeeeEECCCCcEEEEEEEEEEEeecCEEEecccc
Confidence 9999999999999999999887 677886553
No 14
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.92 E-value=1.3e-25 Score=178.44 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=75.0
Q ss_pred CcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCCCCCCee-------EEEEEechhHHHHHhhcCCCCeEEEEEEee
Q 024247 67 LENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSHSDRGFD-------ILLAVGGDMAQLCQKHLKPNDFIYVTGQLH 135 (270)
Q Consensus 67 l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~~~~t~w-------I~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~ 135 (270)
|||+|+|+|||++||| ++|..++.|+||++. ...+++| |+|++||++||.+++||+||++|+|+|+|+
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~-~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~ 79 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRS-VQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFIS 79 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEE
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeC-ccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEE
Confidence 7899999999999999 899999999999963 2335667 999999999999999999999999999999
Q ss_pred ecceecCCCcEEEEEEEEEEEEEeeecC
Q 024247 136 SYSKVDKNGKLCLCYKVVVEDFNYVREC 163 (270)
Q Consensus 136 t~sy~dkdG~kr~~~eVvV~~v~Fl~~~ 163 (270)
++ +|+||+++ ++|+|++|+|++++
T Consensus 80 ~~--~~~~G~~r--~~v~~~~i~~l~~~ 103 (104)
T 1txy_A 80 CH--KAKNGLSK--MVLHAEQIELIDSG 103 (104)
T ss_dssp C----------C--CEEEEEEEEEC---
T ss_pred ec--cCCCCCEE--EEEEEEEEEECcCC
Confidence 98 68999998 89999999999753
No 15
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.92 E-value=3.8e-25 Score=178.19 Aligned_cols=91 Identities=22% Similarity=0.239 Sum_probs=77.1
Q ss_pred cceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeee-cceecC
Q 024247 68 ENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHS-YSKVDK 142 (270)
Q Consensus 68 ~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t-~sy~dk 142 (270)
.|+|+|||||++||| ++|..++.|+|||++.. ++++||+|++|+++||.|..| ||++|+|+|+|++ +.|+++
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~-~~~Dfi~ivvw~klAe~~~~~--kG~~v~v~G~lrsy~~~~~~ 87 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLS-ETKDYLPITISNRLFEGMNLE--VGTRVKIEGQLRSYNRKSPE 87 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTT-SCEEEEEEEEEGGGSTTCCCC--TTCEEEEEEEEEEEECC---
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCC-CCCcEEEEEEEhHHhhHHhhc--CCCEEEEEEEEEecceEECC
Confidence 399999999999999 89999999999999864 578999999999999998755 9999999999987 789999
Q ss_pred CCcEEEEEEEEEEEEEeee
Q 024247 143 NGKLCLCYKVVVEDFNYVR 161 (270)
Q Consensus 143 dG~kr~~~eVvV~~v~Fl~ 161 (270)
||++|+.++|+|++|+||+
T Consensus 88 dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 88 EGKNKLILTVFARDISVVP 106 (107)
T ss_dssp -----EEEEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEEEEEEcc
Confidence 9999999999999999996
No 16
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.92 E-value=7.2e-25 Score=185.33 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=84.0
Q ss_pred CcceEEEEEEcCCCCc--cCCeeEEEEEEEEcCCC-----C---CCCeeEEEEEechh-HHHHHhhcCCCCeEEEEEEee
Q 024247 67 LENSVNFIGTVVRPLE--RSNVFGVYTLLHVKNSH-----S---DRGFDILLAVGGDM-AQLCQKHLKPNDFIYVTGQLH 135 (270)
Q Consensus 67 l~NsV~LIGrLg~DPE--~~G~~va~fsLAV~~~~-----~---~~t~wI~Vv~wGkL-AE~~~~yLkKGd~V~VsGrL~ 135 (270)
.||+|+|||||++||| .+|+.+|.|+||+++.+ + +.|+||+|++||++ ||+|++||+||++|+|+|+|+
T Consensus 5 ~~NkV~LiGrLg~DPer~t~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeGrL~ 84 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLR 84 (148)
T ss_dssp CCCCEEEEEEEEEEEEEESSSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred cCcEEEEEEEeccCCEeeeCCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEEEEEE
Confidence 5899999999999999 67899999999999653 1 57999999999998 999999999999999999999
Q ss_pred ecceecCCCcEEEEEEEEEE-----EEEeeecCCC
Q 024247 136 SYSKVDKNGKLCLCYKVVVE-----DFNYVRECGQ 165 (270)
Q Consensus 136 t~sy~dkdG~kr~~~eVvV~-----~v~Fl~~~~q 165 (270)
+++|+|+||+++|.++|++. .+.+|.....
T Consensus 85 ~r~~~dkdG~kr~~teVi~v~~~~g~~~ll~~~r~ 119 (148)
T 3k7u_C 85 LSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 119 (148)
T ss_dssp ECCCSCCC-----CCEEEEECTTTCEEEEEECCC-
T ss_pred eeeeECCCCCEEEEEEEEEEecCCCeEEEccCCCC
Confidence 99999999999999999975 5999986643
No 17
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.91 E-value=4.2e-24 Score=193.70 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=89.2
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC----CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeec
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH----SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSY 137 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~----~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~ 137 (270)
++||+|+|+|||++||| ++|+.++.|+||+++++ .+.++||+|++||++||.++ ||+||++|+|+|+|+++
T Consensus 126 ~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 126 RALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLVND 204 (264)
T ss_dssp CCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEE
T ss_pred cceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEEee
Confidence 36899999999999999 78999999999999764 35789999999999999999 99999999999999999
Q ss_pred ceecCCCcEEEEEEEEEEEEEeeecCCCC
Q 024247 138 SKVDKNGKLCLCYKVVVEDFNYVRECGQG 166 (270)
Q Consensus 138 sy~dkdG~kr~~~eVvV~~v~Fl~~~~q~ 166 (270)
+|+|+||++++.++|+|++|.||..+.+.
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~~~~~ 233 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTRGPAQ 233 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC----
T ss_pred EEECCCCCEEEEEEEEEEEEEECcccccc
Confidence 99999999999999999999999876543
No 18
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.91 E-value=9.8e-25 Score=181.94 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=83.4
Q ss_pred CcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC------CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeee
Q 024247 67 LENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH------SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHS 136 (270)
Q Consensus 67 l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~------~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t 136 (270)
|+|+|+|||||++||| ++|.+||.|+||+++.. .+.++||+|++||++||.|++||+||++|+|+|+|++
T Consensus 18 M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~t 97 (134)
T 1v1q_A 18 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 97 (134)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEE
T ss_pred ceeEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEE
Confidence 4599999999999999 89999999999996321 1356899999999999999999999999999999999
Q ss_pred cceecCCCcEEEEEEEEEEEEEeeecCC
Q 024247 137 YSKVDKNGKLCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 137 ~sy~dkdG~kr~~~eVvV~~v~Fl~~~~ 164 (270)
++ |++|++++.+ +|++|+||+++.
T Consensus 98 r~--~k~G~kr~~~--~a~~i~~l~~k~ 121 (134)
T 1v1q_A 98 HK--AKNGLSKMVL--HAEQIELIDSVD 121 (134)
T ss_dssp EC--TTTTSCEEEE--EEEEEEETTSCS
T ss_pred EE--CCCCCEEEEE--EEEEEEECcCCC
Confidence 84 7899998866 899999998654
No 19
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.90 E-value=1.1e-23 Score=185.77 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=78.0
Q ss_pred CcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC---------CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 024247 67 LENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH---------SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQ 133 (270)
Q Consensus 67 l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~---------~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGr 133 (270)
.+|+|+|||||++||| ++|+.++.|+||++++. +.+|+||+|++|+++||.|++||+||++|+|+|+
T Consensus 3 ~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeGr 82 (199)
T 3eiv_A 3 GETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGR 82 (199)
T ss_dssp -CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred cccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEE
Confidence 3799999999999999 78999999999997421 1379999999999999999999999999999999
Q ss_pred eeecceecCCCcEEEEEEEEEEEEEee
Q 024247 134 LHSYSKVDKNGKLCLCYKVVVEDFNYV 160 (270)
Q Consensus 134 L~t~sy~dkdG~kr~~~eVvV~~v~Fl 160 (270)
|++++|+|+||++++.++|+|++|..-
T Consensus 83 L~~rswedkdG~kr~~~eVvA~~Ig~d 109 (199)
T 3eiv_A 83 LKQRSYEDREGVKRTVYELDVDEVGAS 109 (199)
T ss_dssp EEEEC--------CCEEEEEEEEEEEE
T ss_pred EEeeEEECCCCCEEEEEEEEEEEEecc
Confidence 999999999999999999999998864
No 20
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.90 E-value=5.6e-24 Score=182.75 Aligned_cols=100 Identities=12% Similarity=0.119 Sum_probs=83.5
Q ss_pred CCCcceEEEEEEcCCCCc---cCCeeEEEEEEEEcCCC--------CCCCeeEEEEEechh-HHHHHhhcCCCCeEEEEE
Q 024247 65 PQLENSVNFIGTVVRPLE---RSNVFGVYTLLHVKNSH--------SDRGFDILLAVGGDM-AQLCQKHLKPNDFIYVTG 132 (270)
Q Consensus 65 ~~l~NsV~LIGrLg~DPE---~~G~~va~fsLAV~~~~--------~~~t~wI~Vv~wGkL-AE~~~~yLkKGd~V~VsG 132 (270)
...||+|+||||||+||| .. ..+|.|+||+++.+ .++|+||+|++||++ ||+|++||+||++|+|+|
T Consensus 19 a~smNkViLiGrLg~DPElR~t~-~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~VeG 97 (164)
T 3k81_C 19 CKSVNSVTLVGVVHDIQSGFVYE-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNG 97 (164)
T ss_dssp -CCEEEEEEEEEEECCCCEESSS-CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEECC
T ss_pred hcCCcEEEEEEEeccCCEEEEcC-ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEEEE
Confidence 467999999999999999 23 78999999998432 257999999999999 999999999999999999
Q ss_pred EeeecceecCCCcEEEEE-EEEEE----EEEeeecCCC
Q 024247 133 QLHSYSKVDKNGKLCLCY-KVVVE----DFNYVRECGQ 165 (270)
Q Consensus 133 rL~t~sy~dkdG~kr~~~-eVvV~----~v~Fl~~~~q 165 (270)
+|++++|+|++|++++.+ .|+|. .+.+|+.+..
T Consensus 98 rL~tr~w~D~~g~k~~~~~~i~V~~~~g~l~~L~~~r~ 135 (164)
T 3k81_C 98 RLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 135 (164)
T ss_dssp EEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC---
T ss_pred EEEeeeEEcCCCCEEEEEEEEEEeCCCCEEEEecCCCC
Confidence 999999999999776644 44555 7999986643
No 21
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.89 E-value=2.4e-23 Score=193.15 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=87.3
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC-------CCCCeeEEEEEechhHHHHHhh-cCCCCeEEEEEE
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH-------SDRGFDILLAVGGDMAQLCQKH-LKPNDFIYVTGQ 133 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~-------~~~t~wI~Vv~wGkLAE~~~~y-LkKGd~V~VsGr 133 (270)
.+||+|+|+|||++||| ++|..++.|+||+++++ .+.++||+|++||++||.+++| |+||++|+|+|+
T Consensus 3 ~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG~ 82 (301)
T 1se8_A 3 RGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGT 82 (301)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEEE
T ss_pred CceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEEE
Confidence 46899999999999999 78999999999998543 2357999999999999999999 999999999999
Q ss_pred eeecceecCCCcEEEEEEEEEEEEEeeecCCC
Q 024247 134 LHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 165 (270)
Q Consensus 134 L~t~sy~dkdG~kr~~~eVvV~~v~Fl~~~~q 165 (270)
|++++|+|+||++++.++|+|++|.||..++.
T Consensus 83 L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 114 (301)
T 1se8_A 83 LEYRQWEAPEGGKRSAVNVKALRMEQLGTQPE 114 (301)
T ss_dssp EEEEEEC-----CEEEEEEEEEEEEECSSCCC
T ss_pred EEeeeEECCCCCEEEEEEEEEeEEEEeecccc
Confidence 99999999999999999999999999987653
No 22
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.89 E-value=3e-23 Score=188.06 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=81.0
Q ss_pred CcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC-------CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEee
Q 024247 67 LENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH-------SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLH 135 (270)
Q Consensus 67 l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~-------~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~ 135 (270)
+||+|+|+|||++||| ++|..++.|+||+++.+ .+.++||+|++||++||.+++||+||++|+|+|+|+
T Consensus 4 ~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~ 83 (264)
T 2fxq_A 4 GLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRLE 83 (264)
T ss_dssp CEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEEE
T ss_pred ceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEEEE
Confidence 6899999999999999 78999999999998643 125899999999999999999999999999999999
Q ss_pred ecceecCCCcEEEEEEEEEEEEEeeecCC
Q 024247 136 SYSKVDKNGKLCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 136 t~sy~dkdG~kr~~~eVvV~~v~Fl~~~~ 164 (270)
+++|+| ||++++.++|+|++|.||..+.
T Consensus 84 ~~~~~~-dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 84 YRQWEK-DGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EC----------CCEEEEEEEEEECCCC-
T ss_pred eeeEEe-CCEEEEEEEEEEEEEEECcCCc
Confidence 999999 9999999999999999998765
No 23
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.88 E-value=1.2e-22 Score=165.28 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=80.3
Q ss_pred cceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC------CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeec
Q 024247 68 ENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH------SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSY 137 (270)
Q Consensus 68 ~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~------~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~ 137 (270)
||+|+|+|||++||| ++|.++|.|+||+++.. .+.++||+|++||++||.+ +||+||++|+|+|+|+++
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~tr 79 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPA 79 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEES
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEEC
Confidence 799999999999999 89999999999997422 1345669999999999998 999999999999999998
Q ss_pred ceecCCCcEEEEEEEEEEEEEeeecCCC
Q 024247 138 SKVDKNGKLCLCYKVVVEDFNYVRECGQ 165 (270)
Q Consensus 138 sy~dkdG~kr~~~eVvV~~v~Fl~~~~q 165 (270)
+ ++| +.++|.|++|+||+.+..
T Consensus 80 s---~~G---~kl~l~a~~Ie~l~~~~~ 101 (115)
T 3fhw_A 80 R---KDS---VKVKLHLQQARRIAGSMG 101 (115)
T ss_dssp S---TTC---SSEEEEEEEEEECCCSCC
T ss_pred C---CCC---CEEEEEEEEEEEcCCCCC
Confidence 5 678 568999999999987654
No 24
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.88 E-value=1.2e-22 Score=188.34 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=84.1
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC-------CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEe
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH-------SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQL 134 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~-------~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL 134 (270)
+|||+|+|+|||++||| ++|+.++.|+||+++.+ .+.++||+|++||++||.+++ |+||++|+|+|+|
T Consensus 127 ~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL 205 (301)
T 1se8_A 127 GAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRL 205 (301)
T ss_dssp TCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEE
T ss_pred cceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEE
Confidence 58999999999999999 78999999999998643 136889999999999999999 9999999999999
Q ss_pred eecceecCCCcEEEEEEEEEEEEEeeecCCCC
Q 024247 135 HSYSKVDKNGKLCLCYKVVVEDFNYVRECGQG 166 (270)
Q Consensus 135 ~t~sy~dkdG~kr~~~eVvV~~v~Fl~~~~q~ 166 (270)
++++|+|+||++++.++|+|++|.||..+...
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~k~~~ 237 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALARGAGN 237 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC----
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEeccCCCC
Confidence 99999999999999999999999999876554
No 25
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.85 E-value=2e-21 Score=155.00 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=74.0
Q ss_pred cceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC-----C-CCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeec
Q 024247 68 ENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH-----S-DRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSY 137 (270)
Q Consensus 68 ~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~-----~-~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~ 137 (270)
.|+|+|+|||++||| ++|.++|.|+||+++.. . +.++||+|++||++|| +.+ |+||++|+|+|+|+++
T Consensus 7 ~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~~r 84 (103)
T 3k8a_A 7 TNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLAQK 84 (103)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEEES
T ss_pred ccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEEEC
Confidence 399999999999999 89999999999996432 1 2345699999999999 665 9999999999999999
Q ss_pred ceecCCCcEEEEEEEEEEEEEeee
Q 024247 138 SKVDKNGKLCLCYKVVVEDFNYVR 161 (270)
Q Consensus 138 sy~dkdG~kr~~~eVvV~~v~Fl~ 161 (270)
+| +|. ...+.+++|+++.
T Consensus 85 s~---~~~---~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 85 SR---RSL---MPMLRIQNIKEYK 102 (103)
T ss_dssp SS---SCC---CEEEEEEEEEECC
T ss_pred cc---CCc---cEEEEEEEEEEcC
Confidence 99 344 6688999999984
No 26
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.84 E-value=4.1e-21 Score=175.15 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=77.2
Q ss_pred cceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC-----C---CCCeeEEEEEechh--HHHHHhhcCCCCeEEEEEE
Q 024247 68 ENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH-----S---DRGFDILLAVGGDM--AQLCQKHLKPNDFIYVTGQ 133 (270)
Q Consensus 68 ~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~-----~---~~t~wI~Vv~wGkL--AE~~~~yLkKGd~V~VsGr 133 (270)
+|+|+||||| +||| + |+.++.|+||+++.+ . ++|+||+|++||++ || +++||+||++|+|+|+
T Consensus 146 lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~VeGr 222 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVNGR 222 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEEEE
T ss_pred cCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEEEE
Confidence 7999999999 9999 7 999999999998643 1 27999999999999 99 8899999999999999
Q ss_pred eeecceecCCCcEEEEEEEEE
Q 024247 134 LHSYSKVDKNGKLCLCYKVVV 154 (270)
Q Consensus 134 L~t~sy~dkdG~kr~~~eVvV 154 (270)
|++++|+|++|++++.++||.
T Consensus 223 L~tr~~~D~~G~kr~~~~vI~ 243 (257)
T 4dni_A 223 LRLSPQLEPSCNKHFYFPYIQ 243 (257)
T ss_dssp EEEEEEECSSSSCEEEEEEEE
T ss_pred EEeeeEEcCCCCEEEEEEEEE
Confidence 999999999999999988654
No 27
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.78 E-value=9.2e-19 Score=148.04 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=78.9
Q ss_pred CCcceEEEEEEcCCCCc---cCCeeEEEEEEEEcCCC----CCCCeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeeec
Q 024247 66 QLENSVNFIGTVVRPLE---RSNVFGVYTLLHVKNSH----SDRGFDILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHSY 137 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE---~~G~~va~fsLAV~~~~----~~~t~wI~Vv~wG-kLAE~~~~yLkKGd~V~VsGrL~t~ 137 (270)
+.+|+|+|+|||+ ||+ ..+..++.|+|||+... +.+++||+|.+|| ++||.+.+||+||++|+|+|||+++
T Consensus 42 r~vN~VvLmGRvt-dpq~ry~~~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLrmn 120 (148)
T 3stb_C 42 RCVNHCVMLGVVQ-NIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRMV 120 (148)
T ss_dssp SCSEEEEEEEEEE-EEEEEEETTEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEEE
T ss_pred eecceEEEEEEec-CccccccCCCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEEcc
Confidence 5799999999997 676 45789999999998653 4578999999996 9999999999999999999999999
Q ss_pred ceecCCCcEEEEEEEEE
Q 024247 138 SKVDKNGKLCLCYKVVV 154 (270)
Q Consensus 138 sy~dkdG~kr~~~eVvV 154 (270)
+|+|++|++.|.+-+|-
T Consensus 121 ~~~d~~gkk~Y~~p~i~ 137 (148)
T 3stb_C 121 PQYDGSMRKYYHYPVIQ 137 (148)
T ss_dssp EEEETTTTEEEEEEEEE
T ss_pred eeECCCCCEEeeccEEE
Confidence 99999999999888763
No 28
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.78 E-value=3.5e-19 Score=162.44 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=80.8
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC----CCCCeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeee
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH----SDRGFDILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHS 136 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~----~~~t~wI~Vv~wG-kLAE~~~~yLkKGd~V~VsGrL~t 136 (270)
+++|+|+|||||++| | ++|. ++.|+|||.... +.+++||.|++|| ++||.|.+||+||++|+|+|||++
T Consensus 28 r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~ 105 (257)
T 4dni_A 28 RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 105 (257)
T ss_dssp CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEE
Confidence 699999999999999 9 7774 667777776433 3467888999999 999999999999999999999999
Q ss_pred cceecCCCcEEEEEEEEEEEEEeee
Q 024247 137 YSKVDKNGKLCLCYKVVVEDFNYVR 161 (270)
Q Consensus 137 ~sy~dkdG~kr~~~eVvV~~v~Fl~ 161 (270)
|+++||++++.++|+|+++.-+.
T Consensus 106 --~~~~dG~kr~~~evva~~v~~~~ 128 (257)
T 4dni_A 106 --VPQYDGSMRKYYHYPVIQVHPGC 128 (257)
T ss_dssp --EEEECSSSSSEEEEEEEEECTTT
T ss_pred --eECCCCCcEEEEEEEEEEEEecC
Confidence 88899999999999999987653
No 29
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.77 E-value=3.6e-19 Score=141.90 Aligned_cols=74 Identities=22% Similarity=0.257 Sum_probs=62.6
Q ss_pred cceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCC-----C-CCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeec
Q 024247 68 ENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSH-----S-DRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSY 137 (270)
Q Consensus 68 ~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~-----~-~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~ 137 (270)
||+|+|+|||++||| ++|.+++.|+||+++.. . +.++||+|++||++||.+++ ++||++|.|+|+|+++
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~tr 80 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLARK 80 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEEC
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEeC
Confidence 899999999999999 89999999999997432 1 23456999999999999997 6899999999999999
Q ss_pred ceecC
Q 024247 138 SKVDK 142 (270)
Q Consensus 138 sy~dk 142 (270)
+|.++
T Consensus 81 s~~s~ 85 (101)
T 3en2_A 81 HRSSK 85 (101)
T ss_dssp C----
T ss_pred cCCCC
Confidence 99644
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.39 E-value=0.00068 Score=54.08 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=50.8
Q ss_pred ceEEEEEEcCCCCc---cCCeeEEEEEEEEcCCCCCCCeeEEEEEechhH--HHHHhhcCCCCeEEEEEEeeecceecC
Q 024247 69 NSVNFIGTVVRPLE---RSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMA--QLCQKHLKPNDFIYVTGQLHSYSKVDK 142 (270)
Q Consensus 69 NsV~LIGrLg~DPE---~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLA--E~~~~yLkKGd~V~VsGrL~t~sy~dk 142 (270)
.++.|+|+|- |++ -....+..|+|.++-....+.++|.|-++|+.+ +.+-+.|+-|..|.|.|+|++..--|.
T Consensus 4 sn~vlvG~V~-DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~ 81 (105)
T 4dka_C 4 SNALMIGRIA-DVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDD 81 (105)
T ss_dssp CEEEEEEEEE-EEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCEECT
T ss_pred cceEEEEEEE-EeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeecccc
Confidence 4678999986 676 245778899999854334567789999999997 889999999999999999998765553
No 31
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=95.07 E-value=0.062 Score=42.10 Aligned_cols=77 Identities=12% Similarity=0.220 Sum_probs=53.4
Q ss_pred ceEEEEEEcCCCCc------cCCee--EEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccee
Q 024247 69 NSVNFIGTVVRPLE------RSNVF--GVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKV 140 (270)
Q Consensus 69 NsV~LIGrLg~DPE------~~G~~--va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~sy~ 140 (270)
+.|+++|+|..--+ .+|.. +....|+ + +|--|++++|++.|+. .+..||.|.|.|+.+...
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~--D----~TG~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~-- 83 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVR--D----ETGSIRVTLWDNLTDI---DVGRGDYVRVRGYIREGY-- 83 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE--E----TTEEEEEEEEGGGGGS---CCCTTCEEEEEEEEEECT--
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE--C----CCCcEEEEEECccccc---ccCCCCEEEEEEEEEEcc--
Confidence 68999999985433 46643 4444443 3 2446999999999987 799999999999887642
Q ss_pred cCCCcEEEEEEEEEEEEEeeec
Q 024247 141 DKNGKLCLCYKVVVEDFNYVRE 162 (270)
Q Consensus 141 dkdG~kr~~~eVvV~~v~Fl~~ 162 (270)
.| .+++.+....-|.+
T Consensus 84 --~g----~~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 84 --YG----GLECTANYVEILKK 99 (105)
T ss_dssp --TS----SEEEEEEEEEEEEC
T ss_pred --CC----CEEEEeCCceEEEe
Confidence 22 23666666555544
No 32
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=94.88 E-value=0.21 Score=38.16 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=51.1
Q ss_pred ceEEEEEEcCCCCc------cCCe--eEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccee
Q 024247 69 NSVNFIGTVVRPLE------RSNV--FGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKV 140 (270)
Q Consensus 69 NsV~LIGrLg~DPE------~~G~--~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~sy~ 140 (270)
+.|+++|+|..--+ .+|. .+..+.|+ + +|--|++++|++.|+. .++.||.|.|.|+.+..
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~--D----eTG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~--- 79 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK--D----DTGSIRGTLWNELADF---EVKKGDIAEVSGYVKQG--- 79 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEE--E----TTEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC---
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE--C----CCCcEEEEEECCcccc---ccCCCCEEEEEEEEEEc---
Confidence 68999999985443 4663 35555543 3 3557999999999886 79999999999977543
Q ss_pred cCCCcEEEEEEEEEEEEEeee
Q 024247 141 DKNGKLCLCYKVVVEDFNYVR 161 (270)
Q Consensus 141 dkdG~kr~~~eVvV~~v~Fl~ 161 (270)
.| .+++.+....-|+
T Consensus 80 --~~----~~el~~g~~~~i~ 94 (97)
T 3e0e_A 80 --YS----GLEISVDNIGIIE 94 (97)
T ss_dssp --------CEEEEEEEEEEEE
T ss_pred --CC----eEEEEECCCcEEE
Confidence 12 5577777665554
No 33
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=93.09 E-value=0.26 Score=38.18 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=45.7
Q ss_pred ceEEEEEEcCCC-C-c----cCC--eeEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeecce
Q 024247 69 NSVNFIGTVVRP-L-E----RSN--VFGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSK 139 (270)
Q Consensus 69 NsV~LIGrLg~D-P-E----~~G--~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~sy 139 (270)
..|.++|.|..- + . .+| ..+...+|+ + +|--|.+++|++.|+.. ..|+.|+.|+|.|......|
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~--D----~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIA--D----DTGELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEE--E----TTEEEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCS
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEE--e----CCCeEEEEEeCchhhhh-hcCCCCCEEEEEeeEEcccc
Confidence 456888888754 2 1 466 556666654 2 24469999999998754 67999999999998754445
No 34
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=91.26 E-value=1.2 Score=34.82 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=56.6
Q ss_pred CCcceEEEEEEcCCCCccCCeeEEEEEEEEcCCC--CCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeecceec-C
Q 024247 66 QLENSVNFIGTVVRPLERSNVFGVYTLLHVKNSH--SDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVD-K 142 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~--~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~sy~d-k 142 (270)
-|+|.|-|-|-+..--=...+.--..+|...+.. ..=|+|.-+-+-|.||--+.+|.+|=.-|.|+|-|++ |.+ +
T Consensus 6 gMLN~V~LEG~IeS~kWS~kKTGF~VTIkQkR~FGer~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~T--Y~ekk 83 (110)
T 2hql_A 6 GMLNRVFLEGEIESSCWSVKKTGFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKKYKTISIEGILRT--YLERK 83 (110)
T ss_dssp -CCEEEEEEEEEEEEEECTTCSEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEEEE--EEETT
T ss_pred ceEEEEEEeeeeehhcccccCceEEEEEeehhhhccccceeEEEEEECCeeehhHHHhhhhceEEEEeeehhh--HHHHh
Confidence 5899999999886422222221112223222222 2347888899999999999999999999999999986 455 4
Q ss_pred CCcEEEEEEEEEEE
Q 024247 143 NGKLCLCYKVVVED 156 (270)
Q Consensus 143 dG~kr~~~eVvV~~ 156 (270)
.+.-.+ .|.|..
T Consensus 84 S~iWKT--tI~~~K 95 (110)
T 2hql_A 84 SEIWKT--TIEIVK 95 (110)
T ss_dssp TTEEEE--EEEEEE
T ss_pred ccccee--EEEEEE
Confidence 454444 444433
No 35
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=90.16 E-value=0.65 Score=36.32 Aligned_cols=60 Identities=15% Similarity=0.033 Sum_probs=44.4
Q ss_pred CcceEEEEEEcCCCCc------cCCe-eEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEEE
Q 024247 67 LENSVNFIGTVVRPLE------RSNV-FGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTG 132 (270)
Q Consensus 67 l~NsV~LIGrLg~DPE------~~G~-~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsG 132 (270)
.++.+++.|||.+--+ .+|. .+..+.|+ +. +--|.+++|+++|+.....|+.|+.++|+|
T Consensus 13 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~-De-----~G~I~at~~~~~~~~f~~~l~eG~vy~Is~ 79 (114)
T 1ynx_A 13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL-DT-----SGEIRATAFNDFATKFNEILQEGKVYYVSK 79 (114)
T ss_dssp TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE-ET-----TEEEEEEECHHHHHHHHHHSCSSSEEEEES
T ss_pred CCCceEEEEEEEEeccceEEecCCCCceEEEEEEE-CC-----CCeEEEEECHHHHHHHHhhcccCcEEEECC
Confidence 3566899999995433 3342 34445543 22 226999999999999999999999999998
No 36
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=88.87 E-value=1.3 Score=34.60 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=41.2
Q ss_pred cceEEEEEEcCCC--Cc----cCCe-eEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEE-EEeee
Q 024247 68 ENSVNFIGTVVRP--LE----RSNV-FGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVT-GQLHS 136 (270)
Q Consensus 68 ~NsV~LIGrLg~D--PE----~~G~-~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~Vs-GrL~t 136 (270)
.+.|.++|.|..- +. .+|+ .+....|+ + +|--|++++|++.|+ .++.|+.|+|. |+...
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~--D----~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v~~ 78 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVG--D----ETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTA 78 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE--E----TTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE--e----CCCEEEEEEECChhh----cCCCCCEEEEEeEEEEE
Confidence 3467778777643 22 6775 55555554 2 243599999999874 48999999999 87765
No 37
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=87.19 E-value=5.2 Score=38.90 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=58.7
Q ss_pred ceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEech----hH---HHHHhhcCCCCeEEEEEEeeecceec
Q 024247 69 NSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGD----MA---QLCQKHLKPNDFIYVTGQLHSYSKVD 141 (270)
Q Consensus 69 NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGk----LA---E~~~~yLkKGd~V~VsGrL~t~sy~d 141 (270)
..|+|.|+|.+ ....|+.+++..|- +. +.-|+|++-.+ +. ...++.|+.||.|.|+|.+..+.-..
T Consensus 37 ~~V~v~GwV~~-~R~~g~~l~Fi~Lr--D~----~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~ 109 (487)
T 1eov_A 37 KEVLFRARVHN-TRQQGATLAFLTLR--QQ----ASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPI 109 (487)
T ss_dssp CEEEEEEEEEE-EEECSSSEEEEEEE--ET----TEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCC
T ss_pred CEEEEEEEEEE-eeccCCccEEEEEE--EC----CccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCC
Confidence 35999999975 33446554555553 32 33588888543 22 23456799999999999998654221
Q ss_pred CCCcEEEEEEEEEEEEEeeecCC
Q 024247 142 KNGKLCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 142 kdG~kr~~~eVvV~~v~Fl~~~~ 164 (270)
+. .+.-.+||.|+++..|.+..
T Consensus 110 ~~-~~~g~~El~~~~i~vl~~a~ 131 (487)
T 1eov_A 110 KS-ATVQNLEIHITKIYTISETP 131 (487)
T ss_dssp TT-SSEEEEEEEEEEEEEEECCC
T ss_pred cC-CCCCcEEEEEEEEEEeeccc
Confidence 11 23346899999999998764
No 38
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=86.98 E-value=2.3 Score=33.80 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=54.3
Q ss_pred CccccCCCCcceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCe-eEEEEEechhHHH--HHhhcCCCCeEEEEEEee
Q 024247 59 TTIKWQPQLENSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGF-DILLAVGGDMAQL--CQKHLKPNDFIYVTGQLH 135 (270)
Q Consensus 59 ~~I~~~~~l~NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~-wI~Vv~wGkLAE~--~~~yLkKGd~V~VsGrL~ 135 (270)
..+.....-++.|.|+|.|.. .+.... ...+. +.+ .|- -|.|..|.+..+. ....+..|+.|.|.|+|+
T Consensus 22 ~~f~i~g~~i~~V~iVG~V~~-~~~~~~-~~~~~--ldD----~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~ 93 (132)
T 3kdf_D 22 EVFRIGNVEISQVTIVGIIRH-AEKAPT-NIVYK--IDD----MTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLR 93 (132)
T ss_dssp SCEEETTEECCEEEEEEEEEE-EEECSS-EEEEE--EEC----SSSSCEEEEEEC---------CCCCTTCEEEEEEEEE
T ss_pred CcEEECCEEEEEEEEEEEEEE-EEEcCC-eEEEE--EEC----CCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEE
Confidence 344555566889999999875 332222 22233 344 244 6899999876533 356789999999999998
Q ss_pred ecceecCCCcEEEEEEEEEEEEEeeecC
Q 024247 136 SYSKVDKNGKLCLCYKVVVEDFNYVREC 163 (270)
Q Consensus 136 t~sy~dkdG~kr~~~eVvV~~v~Fl~~~ 163 (270)
.. +|++ +|.+..+.-+...
T Consensus 94 ~f-----~g~~----qi~~~~ir~v~d~ 112 (132)
T 3kdf_D 94 SF-----QNKK----SLVAFKIMPLEDM 112 (132)
T ss_dssp EE-----TTEE----EEEEEEEEECSST
T ss_pred eE-----CCEE----EEEEEEEEEcCCc
Confidence 74 3443 4677777776554
No 39
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=84.43 E-value=7 Score=31.09 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=56.5
Q ss_pred CccccCCCCcceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHH---HHhhcCCCCeEEEEEEee
Q 024247 59 TTIKWQPQLENSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQL---CQKHLKPNDFIYVTGQLH 135 (270)
Q Consensus 59 ~~I~~~~~l~NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~---~~~yLkKGd~V~VsGrL~ 135 (270)
..+.....-++.|.|+|.|.. .+.... ...+. +.++ |--|.|..|....+. -...+..|+.|.|.|+|+
T Consensus 27 ~~f~i~g~~i~~V~iVG~V~~-~~~~~~-~~~~~--ldD~----TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~ 98 (136)
T 4gop_B 27 AEFILDGAELGQLTFVAVVRN-ISRNAT-NVAYS--VEDG----TGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLK 98 (136)
T ss_dssp CCCBSSSSBCCEEEEEEEEEE-EEECSS-EEEEE--EECS----SCEEEEEEECC--------CCSCCTTCEEEEEEEEE
T ss_pred CcEEECCEEEEEEEEEEEEEE-EEecCC-eEEEE--EECC----CCCEEEEEecccCCcccccccccCCCCEEEEEEEEE
Confidence 445556677899999999975 331112 22333 3443 446999999876543 356799999999999998
Q ss_pred ecceecCCCcEEEEEEEEEEEEEeeecC
Q 024247 136 SYSKVDKNGKLCLCYKVVVEDFNYVREC 163 (270)
Q Consensus 136 t~sy~dkdG~kr~~~eVvV~~v~Fl~~~ 163 (270)
.. .|++ +|.+..+.-+...
T Consensus 99 ~f-----~g~~----qi~~~~ir~v~d~ 117 (136)
T 4gop_B 99 SF-----QNRR----SISSGHMRPVIDY 117 (136)
T ss_dssp EE-----TTEE----EEEESEEEECSSH
T ss_pred Ee-----CCEE----EEEEEEEEECCCc
Confidence 64 3443 5677777766543
No 40
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=83.46 E-value=3.7 Score=31.68 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=40.2
Q ss_pred cceEEEEEEcCCCCc----cCCee--EEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEE-EEeee
Q 024247 68 ENSVNFIGTVVRPLE----RSNVF--GVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVT-GQLHS 136 (270)
Q Consensus 68 ~NsV~LIGrLg~DPE----~~G~~--va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~Vs-GrL~t 136 (270)
++.|+++|.|-.--+ .+|+. ++...|+ + +|--|++++|++. |+.||.|.|. |+...
T Consensus 13 ~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~--D----eTG~I~~tlW~~~-------l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE--D----DTARIRISSFGKQ-------LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE--C----SSCEEEEEEESSC-------CCTTEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEccccccccCCCeeEEEEEEEE--c----CCCeEEEEEEcCc-------cCCCCEEEEEeeEEeE
Confidence 466888888864322 56763 5555554 2 3446999999987 9999999999 77654
No 41
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=82.69 E-value=7.5 Score=37.28 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=58.0
Q ss_pred CCcceEEEEEEcCCCCc--cCCeeEEEEEEEEcCCCCCCCeeEEEEEec--hhHHHHHhhcCCCCeEEEEEEeeecceec
Q 024247 66 QLENSVNFIGTVVRPLE--RSNVFGVYTLLHVKNSHSDRGFDILLAVGG--DMAQLCQKHLKPNDFIYVTGQLHSYSKVD 141 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE--~~G~~va~fsLAV~~~~~~~t~wI~Vv~wG--kLAE~~~~yLkKGd~V~VsGrL~t~sy~d 141 (270)
+.+-++.+.|.|...|. .+|.+ +|.|- + .+.-|+|++|. +-...+...|..||.|.|-|.++.
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV--~f~l~--d----~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~----- 348 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHV--FFEID--T----KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK----- 348 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEE--EEEEE--E----TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET-----
T ss_pred ccCceEEEEEEEecCcEeccCceE--EEEEE--c----CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC-----
Confidence 46788999999999888 66653 34443 2 14459999999 556677788999999999998653
Q ss_pred CCCcEEEEEEEEEEEEEeeecC
Q 024247 142 KNGKLCLCYKVVVEDFNYVREC 163 (270)
Q Consensus 142 kdG~kr~~~eVvV~~v~Fl~~~ 163 (270)
| .+.++.+..+.-.
T Consensus 349 --g------tLnvEk~~v~~l~ 362 (402)
T 3au7_A 349 --D------TINLEKIQIVELA 362 (402)
T ss_dssp --T------EEEEEEEEEEECC
T ss_pred --C------EEEEEEEEEcccC
Confidence 4 6778888877553
No 42
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=82.01 E-value=8.1 Score=37.93 Aligned_cols=80 Identities=14% Similarity=0.225 Sum_probs=55.5
Q ss_pred eEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechhH---H---HHHhhcCCCCeEEEEEEeeecceecCC
Q 024247 70 SVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMA---Q---LCQKHLKPNDFIYVTGQLHSYSKVDKN 143 (270)
Q Consensus 70 sV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLA---E---~~~~yLkKGd~V~VsGrL~t~sy~dkd 143 (270)
.|+|.|+|-. ....|+.+++..|- +. +.-|+|++-.+.. + .+.+.|..||.|.|+|.+.... .
T Consensus 57 ~V~v~Grv~~-~R~~gkk~~F~~Lr--D~----sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~----~ 125 (521)
T 3bju_A 57 TLKVAGRIHA-KRASGGKLIFYDLR--GE----GVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK----K 125 (521)
T ss_dssp CEEEEEEEEE-EEESSSSEEEEEEE--ET----TEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT----T
T ss_pred EEEEEEEEEE-EecCCCCcEEEEEE--EC----CEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC----C
Confidence 5999999974 33446345555553 32 3468888865421 2 2346799999999999998652 4
Q ss_pred CcEEEEEEEEEEEEEeeecCC
Q 024247 144 GKLCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 144 G~kr~~~eVvV~~v~Fl~~~~ 164 (270)
|+ ++|.|+++..|.+..
T Consensus 126 ge----~ei~~~~i~~l~~~~ 142 (521)
T 3bju_A 126 GE----LSIIPYEITLLSPCL 142 (521)
T ss_dssp CC----EEEEEEEEEEEECCC
T ss_pred CC----EEEEEeEEEEeecCC
Confidence 53 799999999998753
No 43
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=79.91 E-value=8.6 Score=36.70 Aligned_cols=82 Identities=11% Similarity=0.132 Sum_probs=53.4
Q ss_pred eEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHH-HHhhcCCCCeEEEEEEeeecceecCCCcE-E
Q 024247 70 SVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQL-CQKHLKPNDFIYVTGQLHSYSKVDKNGKL-C 147 (270)
Q Consensus 70 sV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~-~~~yLkKGd~V~VsGrL~t~sy~dkdG~k-r 147 (270)
.|+|.|+|.+ ....|+.+++..| ++. +..++|++-.++.+. ....|..||.|.|+|.+..+. .|.. .
T Consensus 13 ~V~v~Gwv~~-~R~~Gk~~~Fi~L--rD~----~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~----~~~~~~ 81 (435)
T 2xgt_A 13 RVCIKGWIHR-MRRQGKSLMFFIL--RDG----TGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVP----EGKEAP 81 (435)
T ss_dssp EEEEEEEEEE-EEECTTSEEEEEE--ECS----SCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC----------
T ss_pred EEEEEEEEEE-ecccCCCcEEEEE--EEC----CceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecC----CCcCCC
Confidence 5999999975 3344544665555 332 335888887654321 112699999999999998642 2221 1
Q ss_pred EEEEEEEEEEEeeec
Q 024247 148 LCYKVVVEDFNYVRE 162 (270)
Q Consensus 148 ~~~eVvV~~v~Fl~~ 162 (270)
-.+||.|+++..|..
T Consensus 82 g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 82 NGHELIADFWKIIGN 96 (435)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CcEEEEEEEEEEeec
Confidence 237999999999986
No 44
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=79.61 E-value=5.1 Score=35.39 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=40.9
Q ss_pred eeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccee--cCCCcEEEEEEEEEEEEEeee
Q 024247 104 FDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKV--DKNGKLCLCYKVVVEDFNYVR 161 (270)
Q Consensus 104 ~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~sy~--dkdG~kr~~~eVvV~~v~Fl~ 161 (270)
--+.|++-++|.+ .++.||+|.|.|-+...... .+.+...+.+-|.|.+|..++
T Consensus 211 rsi~v~l~~dLvd----~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 211 RQLEIILEDDLVD----SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp CEEEEEEEGGGTT----SSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred cEEEEEEccCccC----cccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 4588999999854 67999999999999875543 234556777888888887764
No 45
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=78.75 E-value=17 Score=30.34 Aligned_cols=86 Identities=13% Similarity=0.245 Sum_probs=57.6
Q ss_pred cCCCCcceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechh-H--HHHHhhcCCCCeEEEEEEeeecce
Q 024247 63 WQPQLENSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDM-A--QLCQKHLKPNDFIYVTGQLHSYSK 139 (270)
Q Consensus 63 ~~~~l~NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkL-A--E~~~~yLkKGd~V~VsGrL~t~sy 139 (270)
|.-.-++.|.|+|.|..-=+... +..+.++++. ..-|.|++|-+. + ......+..|+.|-|.|+|++.
T Consensus 42 ~~n~PI~~V~IvGiVv~~~~~~~----~~~ytIDD~T---G~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f-- 112 (159)
T 3kf6_A 42 WMGFPIRWIQIVGYIAAIDIYEG----KHVLTVDDCS---GMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF-- 112 (159)
T ss_dssp ETTEEECEEEEEEEEEEEEEETT----EEEEEEECSS---SCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS--
T ss_pred ECCeEEEEEEEEEEEEEEEEeCC----EEEEEEecCC---CCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee--
Confidence 44455788999999986222222 2334456542 236899999886 2 2334558899999999999864
Q ss_pred ecCCCcEEEEEEEEEEEEEeeecCC
Q 024247 140 VDKNGKLCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 140 ~dkdG~kr~~~eVvV~~v~Fl~~~~ 164 (270)
.|++ +|.|+.+..+...+
T Consensus 113 ---r~~r----qI~~~~i~~v~d~n 130 (159)
T 3kf6_A 113 ---RSEV----ELIAQSFEELRDPN 130 (159)
T ss_dssp ---SSSC----EEEEEEEEEECSTH
T ss_pred ---CCEE----EEEEEEEEECCCcH
Confidence 2333 78888888887643
No 46
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=77.16 E-value=11 Score=36.23 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=56.1
Q ss_pred ceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEec-hhHH-HHHhhcCCCCeEEEEEEeeecceecCCCc-
Q 024247 69 NSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGG-DMAQ-LCQKHLKPNDFIYVTGQLHSYSKVDKNGK- 145 (270)
Q Consensus 69 NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wG-kLAE-~~~~yLkKGd~V~VsGrL~t~sy~dkdG~- 145 (270)
..|+|.|+|-. ....|+.+++..| ++. +..|+|++-. ++.+ ..+..|..||.|.|+|.+.... .++...
T Consensus 31 ~~V~v~Gwv~~-~R~~Gk~~~Fi~L--rD~----sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~-~~~~~~~ 102 (456)
T 3m4p_A 31 KLVTFKGWAYH-IRKARKTLIFVEL--RDG----SGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYA-GKNHPPE 102 (456)
T ss_dssp SEEEEEEEEEE-EECCSSSEEEEEE--ECS----SCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCC-SSSCCCS
T ss_pred CEEEEEEEEEE-EecCCCceEEEEE--EeC----CccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecC-CcccCcc
Confidence 46999999974 3345555666555 332 2358888876 3322 1245799999999999997542 111000
Q ss_pred --EEEEEEEEEEEEEeeecCC
Q 024247 146 --LCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 146 --kr~~~eVvV~~v~Fl~~~~ 164 (270)
+.-.+||.|+++..|.+..
T Consensus 103 ~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 103 IADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp CTTBCSSEEEEEEEEEEECCC
T ss_pred cCCCCcEEEEEeEEEEEecCC
Confidence 0023699999999998764
No 47
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=75.71 E-value=24 Score=33.78 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=55.4
Q ss_pred ceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechh--HH--HHHhhcCCCCeEEEEEEeeecceecCCC
Q 024247 69 NSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDM--AQ--LCQKHLKPNDFIYVTGQLHSYSKVDKNG 144 (270)
Q Consensus 69 NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkL--AE--~~~~yLkKGd~V~VsGrL~t~sy~dkdG 144 (270)
..|+|.|+|.+ ....|+ +++..| ++. +..++|++-.+. .+ ..++.|..||.|.|+|.+.... ...|
T Consensus 17 ~~V~v~Gwv~~-~R~~g~-~~Fi~L--rD~----~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~--~~~~ 86 (438)
T 3nem_A 17 QKVKVAGWVWE-VKDLGG-IKFLWI--RDR----DGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP--KAKL 86 (438)
T ss_dssp CEEEEEEEEEE-EEEETT-EEEEEE--EET----TEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECT--TSTT
T ss_pred CEEEEEEEEEE-EecCCC-eEEEEE--EEC----CeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC--CCCC
Confidence 36899999975 233353 555444 332 335888887653 12 2356799999999999998642 1123
Q ss_pred cEEEEEEEEEEEEEeeecCC
Q 024247 145 KLCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 145 ~kr~~~eVvV~~v~Fl~~~~ 164 (270)
.+||.|+++..|.+..
T Consensus 87 ----~~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 87 ----GFEILPEKIVVLNRAE 102 (438)
T ss_dssp ----SEEEEEEEEEEEECBC
T ss_pred ----cEEEEEEEEEEEecCC
Confidence 3799999999998764
No 48
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=74.62 E-value=8.4 Score=33.06 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=42.9
Q ss_pred cceEEEEEEcCCCCc------cCCe-eEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEEE
Q 024247 68 ENSVNFIGTVVRPLE------RSNV-FGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTG 132 (270)
Q Consensus 68 ~NsV~LIGrLg~DPE------~~G~-~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsG 132 (270)
++.+.|.|||.+--+ ++|. .+..+.|+ +. .- -|.+++|+++|+.....|+.|+.++|++
T Consensus 18 ~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~-De----~G-~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 18 QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV-DE----SG-EIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE-CS----SC-EEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCceEEEEEEEEecccceeeCCCCCceEEEEEEE-CC----CC-eEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 456789999985332 3332 24444443 21 22 6999999999999999999999999998
No 49
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=73.59 E-value=4.8 Score=43.65 Aligned_cols=77 Identities=17% Similarity=0.086 Sum_probs=39.1
Q ss_pred eEEEEEEcCCCCc---cCCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeecceecCCCcE
Q 024247 70 SVNFIGTVVRPLE---RSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKL 146 (270)
Q Consensus 70 sV~LIGrLg~DPE---~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~sy~dkdG~k 146 (270)
.|.+.|-|..=-+ .+|+.+++++|. + .+--+.|++|.+.-+.....|..|..|.|.|+++.+ +
T Consensus 1044 ~v~v~G~v~~~~~~~Tk~G~~maf~tle--D----~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~------~-- 1109 (1220)
T 2hpi_A 1044 KVLLSGMVEEVVRKPTRSGGMMARFTLS--D----ETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKG------E-- 1109 (1220)
T ss_dssp EEEEEEEECCC------------CEEEE--E----TTEEEEEC-------------CTTCEEEEEEEEC-----------
T ss_pred eEEEEEEEEEEEEeecCCCCeEEEEEEE--E----CCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEEC------C--
Confidence 4888888774222 788888888874 2 244589999999999999999999999999999842 1
Q ss_pred EEEEEEEEEEEEeeec
Q 024247 147 CLCYKVVVEDFNYVRE 162 (270)
Q Consensus 147 r~~~eVvV~~v~Fl~~ 162 (270)
..+|+|+++.-+..
T Consensus 1110 --~~~l~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1110 --ELRVLAQAVWTLEE 1123 (1220)
T ss_dssp ----CEEEEEEEEHHH
T ss_pred --CcEEEEeeeecHHH
Confidence 25889999876653
No 50
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=72.74 E-value=8.1 Score=38.46 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=54.5
Q ss_pred eEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechh-HHHHHhhcCCCCeEEEEEEeeecceec---CCCc
Q 024247 70 SVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDM-AQLCQKHLKPNDFIYVTGQLHSYSKVD---KNGK 145 (270)
Q Consensus 70 sV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkL-AE~~~~yLkKGd~V~VsGrL~t~sy~d---kdG~ 145 (270)
.|+|.|+|.+ ....|+ +++..| ++. +..++|++-.+. +-..++.|+.||.|.|+|.+..+.-.+ +.|
T Consensus 18 ~V~l~GwV~~-~R~~G~-~~Fi~L--rD~----~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g- 88 (580)
T 1l0w_A 18 EVVLEGWVNR-RRDLGG-LIFLDL--RDR----EGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATG- 88 (580)
T ss_dssp EEEEEEEEEE-EEECSS-CEEEEE--EET----TEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTT-
T ss_pred EEEEEEEEEE-EecCCC-eEEEEE--EEC----CeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCc-
Confidence 5999999974 333353 444444 332 335888886542 112346799999999999998764111 223
Q ss_pred EEEEEEEEEEEEEeeecCC
Q 024247 146 LCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 146 kr~~~eVvV~~v~Fl~~~~ 164 (270)
.+||.|+++..|.+..
T Consensus 89 ---e~Ei~~~~i~vl~~a~ 104 (580)
T 1l0w_A 89 ---RVEVELSALEVLAEAK 104 (580)
T ss_dssp ---TEEEEEEEEEEEECCC
T ss_pred ---cEEEEEeEEEEeccCc
Confidence 3799999999998653
No 51
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=72.62 E-value=25 Score=34.71 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechh-H-H--HHHhhcCCCCeEEEEEEeeecceecCCCc
Q 024247 70 SVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDM-A-Q--LCQKHLKPNDFIYVTGQLHSYSKVDKNGK 145 (270)
Q Consensus 70 sV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkL-A-E--~~~~yLkKGd~V~VsGrL~t~sy~dkdG~ 145 (270)
.|+|.|+|-. ....|+ +++..| ++. +.-|+|++-.+. . + ...+.|..||.|.|+|.+.. .+.|
T Consensus 88 ~V~v~GwV~~-~R~~Gk-~~Fi~L--rD~----sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~----t~~g- 154 (529)
T 4ex5_A 88 EVAIAGRMML-KRVMGK-ASFATV--QDG----SGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFR----TNKG- 154 (529)
T ss_dssp EEEEEEEEEE-EEEETT-EEEEEE--ECS----SCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEE----CTTS-
T ss_pred EEEEEEEEEe-eecCCC-eEEEEE--EeC----CeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEE----cCCC-
Confidence 5999999975 233354 444444 332 236888886543 1 1 23467999999999999975 2345
Q ss_pred EEEEEEEEEEEEEeeecCC
Q 024247 146 LCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 146 kr~~~eVvV~~v~Fl~~~~ 164 (270)
.++|.|+++.+|.+..
T Consensus 155 ---elel~~~~i~vLs~a~ 170 (529)
T 4ex5_A 155 ---ELSVKCTQLRLLAKAL 170 (529)
T ss_dssp ---CEEEEEEEEEEEECCS
T ss_pred ---cEEEEEEEEEEEecCC
Confidence 3799999999998764
No 52
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=71.61 E-value=21 Score=34.69 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=54.5
Q ss_pred eEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEech-hHH---HHHhhcCCCCeEEEEEEeeecceecCCCc
Q 024247 70 SVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGD-MAQ---LCQKHLKPNDFIYVTGQLHSYSKVDKNGK 145 (270)
Q Consensus 70 sV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGk-LAE---~~~~yLkKGd~V~VsGrL~t~sy~dkdG~ 145 (270)
.|+|.|+|-. ....|+ +++..| ++. +..|+|++-.+ +.+ ...+.|..||.|.|+|.+... +.|
T Consensus 58 ~V~v~Gwv~~-~R~~gk-~~F~~L--rD~----sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~----~~g- 124 (493)
T 3a74_A 58 EVAVAGRIMT-KRGMGK-AGFAHI--QDV----TGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKT----KVG- 124 (493)
T ss_dssp EEEEEEEEEE-EEEETT-EEEEEE--EET----TEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEEC----TTC-
T ss_pred EEEEEEEEEE-EecCCC-cEEEEE--EEC----CEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeC----CCC-
Confidence 6999999975 333354 444444 332 33689988654 222 233679999999999999864 345
Q ss_pred EEEEEEEEEEEEEeeecCC
Q 024247 146 LCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 146 kr~~~eVvV~~v~Fl~~~~ 164 (270)
.++|.|+++..|.+..
T Consensus 125 ---e~ei~~~~i~vl~~~~ 140 (493)
T 3a74_A 125 ---ELSIKVSSYEFLTKAL 140 (493)
T ss_dssp ---CEEEEEEEEEEEECCS
T ss_pred ---cEEEEEEEEEEccccc
Confidence 3699999999998763
No 53
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=71.47 E-value=23 Score=33.65 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=52.3
Q ss_pred ceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcC-CCCeEEEEEEeeecceecCCCcEE
Q 024247 69 NSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLK-PNDFIYVTGQLHSYSKVDKNGKLC 147 (270)
Q Consensus 69 NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLk-KGd~V~VsGrL~t~sy~dkdG~kr 147 (270)
..|+|.|+|.+ ....|+ +++..| ++. +..++|++-. +.|+ .||.|.|+|.+.... .|.
T Consensus 14 ~~V~v~Gwv~~-~R~~g~-~~F~~l--rD~----~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~----~~~-- 72 (422)
T 1n9w_A 14 QEVELLGFLHW-RRDLGR-IQFLLL--RDR----SGVVQVVTGG-------LKLPLPESALRVRGLVVENA----KAP-- 72 (422)
T ss_dssp SEEEEEEEEEE-EEECSS-EEEEEE--EET----TEEEEEEEES-------CCCCCTTCEEEEEEEEEECT----TST--
T ss_pred CEEEEEEEEEE-EecCCC-eEEEEE--EEC----CEEEEEEEEc-------cccCCCCCEEEEEEEEEecC----CCC--
Confidence 46999999975 333454 555444 332 3348888754 6799 999999999998653 221
Q ss_pred EEEEEEEEEEEeeecC
Q 024247 148 LCYKVVVEDFNYVREC 163 (270)
Q Consensus 148 ~~~eVvV~~v~Fl~~~ 163 (270)
-.+||.|+++..|.+.
T Consensus 73 ~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 73 GGLEVQAKEVEVLSPA 88 (422)
T ss_dssp TSEEEEEEEEEEEECC
T ss_pred ccEEEEEeEEEEeccC
Confidence 1479999999999876
No 54
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=70.53 E-value=29 Score=33.04 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=54.2
Q ss_pred ceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechhH--H--HHHhhcCCCCeEEEEEEeeecceecCCC
Q 024247 69 NSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMA--Q--LCQKHLKPNDFIYVTGQLHSYSKVDKNG 144 (270)
Q Consensus 69 NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLA--E--~~~~yLkKGd~V~VsGrL~t~sy~dkdG 144 (270)
..|+|.|+|.+ ....|+ +++..| ++. +..++|++-.+.. + ...+.|..||.|.|+|.+.... .|
T Consensus 17 ~~V~v~G~v~~-~R~~g~-~~F~~l--rD~----~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~----~~ 84 (434)
T 1x54_A 17 KKVRLAGWVYT-NMRVGK-KIFLWI--RDS----TGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADE----RA 84 (434)
T ss_dssp CEEEEEEEEEE-EEEETT-EEEEEE--EET----TEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT----TS
T ss_pred CEEEEEEEEEE-EecCCC-eEEEEE--EEC----CEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecC----CC
Confidence 35999999975 333354 444444 332 3358998864321 1 2337899999999999998653 22
Q ss_pred cEEEEEEEEEEEEEeeecC
Q 024247 145 KLCLCYKVVVEDFNYVREC 163 (270)
Q Consensus 145 ~kr~~~eVvV~~v~Fl~~~ 163 (270)
. -.++|.|+++..|.+.
T Consensus 85 ~--~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 85 P--GGAEVHVEKLEVIQAV 101 (434)
T ss_dssp G--GGEEEEEEEEEEEECC
T ss_pred C--ccEEEEEeEEEEeecC
Confidence 1 1479999999999876
No 55
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=70.33 E-value=21 Score=33.96 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=54.0
Q ss_pred ceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechh--HHHHHhhcCCCCeEEEEEEeeecceecCCCcE
Q 024247 69 NSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDM--AQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKL 146 (270)
Q Consensus 69 NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkL--AE~~~~yLkKGd~V~VsGrL~t~sy~dkdG~k 146 (270)
..|+|.|+|.+ ....|+ +++..| ++. +..++|++-.+. .+ .++.|+.||.|.|+|.+.... .|.
T Consensus 17 ~~V~v~Gwv~~-~R~~g~-~~F~~l--rD~----~g~iQ~v~~~~~~~~~-~~~~l~~~~~v~v~G~v~~~~----~~~- 82 (429)
T 1wyd_A 17 KEVIWAGWVHL-LRDLGG-KKFIIL--RDK----TGLGQVVVDKNSSAFG-ISQELTQESVIQVRGIVKADK----RAP- 82 (429)
T ss_dssp CEEEEEEEEEE-EEEETT-EEEEEE--EET----TEEEEEEECTTSTTHH-HHTTCCTTCEEEEEEEEEECS----SSG-
T ss_pred CEEEEEEEEEE-EecCCC-eEEEEE--EEC----CeeEEEEEeCChHHHH-HHHhCCCCCEEEEEEEEEecC----CCC-
Confidence 35999999975 333354 444444 332 334888886532 23 237899999999999998653 221
Q ss_pred EEEEEEEEEEEEeeecC
Q 024247 147 CLCYKVVVEDFNYVREC 163 (270)
Q Consensus 147 r~~~eVvV~~v~Fl~~~ 163 (270)
-.++|.|+++..|.+.
T Consensus 83 -~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 83 -RGIELHAEEITLLSKA 98 (429)
T ss_dssp -GGEEEEEEEEEEEECC
T ss_pred -ccEEEEEeEEEEeccC
Confidence 1479999999999876
No 56
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=70.18 E-value=11 Score=37.37 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=55.3
Q ss_pred eEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHH--HHhhcCCCCeEEEEEEeeeccee--c---C
Q 024247 70 SVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQL--CQKHLKPNDFIYVTGQLHSYSKV--D---K 142 (270)
Q Consensus 70 sV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~--~~~yLkKGd~V~VsGrL~t~sy~--d---k 142 (270)
.|+|.|+|.+ ....|+ +++..| ++. +..++|++-.+..+. .++.|..||.|.|+|.+..+.-. + +
T Consensus 17 ~V~l~GwV~~-~R~~G~-~~Fi~L--rD~----~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~ 88 (585)
T 1c0a_A 17 QVTLCGWVNR-RRDLGS-LIFIDM--RDR----EGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMA 88 (585)
T ss_dssp EEEEEEEEEE-EEECSS-CEEEEE--EET----TEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTST
T ss_pred EEEEEEEEEE-EecCCC-cEEEEE--EEC----CeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCC
Confidence 5999999975 333353 444444 332 335888886654332 34679999999999999865211 0 2
Q ss_pred CCcEEEEEEEEEEEEEeeecCC
Q 024247 143 NGKLCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 143 dG~kr~~~eVvV~~v~Fl~~~~ 164 (270)
.|+ +||.|+++..|.+..
T Consensus 89 ~ge----iEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 89 TGE----IEVLASSLTIINRAD 106 (585)
T ss_dssp TTT----EEEEEEEEEEEECCC
T ss_pred Ccc----EEEEEeEEEEEeccC
Confidence 343 799999999998653
No 57
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=68.81 E-value=22 Score=35.32 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=57.0
Q ss_pred ceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEech--h---HHHHHhhcCCCCeEEEEEEeeecceecCC
Q 024247 69 NSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGD--M---AQLCQKHLKPNDFIYVTGQLHSYSKVDKN 143 (270)
Q Consensus 69 NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGk--L---AE~~~~yLkKGd~V~VsGrL~t~sy~dkd 143 (270)
-.|+|.|+|-+ ....| .+++..|- +. +..|+|++-.+ . .-..++.|..|+.|.|+|.+....-. ..
T Consensus 63 ~~V~v~Gwv~~-~R~~g-kl~Fi~Lr--D~----~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~-~~ 133 (548)
T 3i7f_A 63 KTVTIRARVQA-VRGKG-NMVFLFLR--KG----IYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKP-IE 133 (548)
T ss_dssp CEEEEEEEEEE-EEECS-SEEEEEEE--ET----TEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSC-CT
T ss_pred CEEEEEEEEEE-EecCC-CeEEEEEE--EC----CeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCcc-cc
Confidence 46899999964 33445 35555552 32 33688888652 1 11235679999999999999875321 11
Q ss_pred CcEEEEEEEEEEEEEeeecCCC
Q 024247 144 GKLCLCYKVVVEDFNYVRECGQ 165 (270)
Q Consensus 144 G~kr~~~eVvV~~v~Fl~~~~q 165 (270)
+.+.-.+||.|++|..|.....
T Consensus 134 ~~~~~~~El~~~~i~vls~a~~ 155 (548)
T 3i7f_A 134 KATQQDVEIHVTSIAVVSLAEY 155 (548)
T ss_dssp TSSSCSEEEEEEEEEEEECCCB
T ss_pred cCCCCcEEEEEeEEEEEecCCC
Confidence 2222357999999999987743
No 58
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=67.93 E-value=12 Score=35.32 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=44.0
Q ss_pred cceEEEEEEcCC--CCc----cCCe-eEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 024247 68 ENSVNFIGTVVR--PLE----RSNV-FGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQ 133 (270)
Q Consensus 68 ~NsV~LIGrLg~--DPE----~~G~-~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGr 133 (270)
++.++|.|||.. +.. ++|. .+..+.|+ +. +--|++++|+++|+.....|+.|+.++|++-
T Consensus 13 ~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~-De-----~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 79 (444)
T 4gop_C 13 QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLL-DD-----SGEIKATGFNDAVDRFYPLLQENHVYLISKA 79 (444)
T ss_dssp CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEE-CS-----SCEEEEEEETHHHHHHTTTCCTTCEEEEESC
T ss_pred CcceEEEEEEEEccCcceecCCCCCceEEEEEEE-cC-----CCEEEEEEeHHHHHHHHHheecCCEEEEcCC
Confidence 467899999995 222 3343 34444443 22 2269999999999999999999999999983
No 59
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=67.65 E-value=25 Score=34.35 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=54.2
Q ss_pred eEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEech-hHH---H-HHhhcCCCCeEEEEEEeeecceecCCC
Q 024247 70 SVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGD-MAQ---L-CQKHLKPNDFIYVTGQLHSYSKVDKNG 144 (270)
Q Consensus 70 sV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGk-LAE---~-~~~yLkKGd~V~VsGrL~t~sy~dkdG 144 (270)
.|+|.|+|-. ....|+ +++..| ++. +.-|+|++-.+ +.+ . ..+.|..||.|.|+|.+... +.|
T Consensus 66 ~V~v~Gwv~~-~R~~gk-~~F~~L--rD~----sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~----~~g 133 (504)
T 1e1o_A 66 EVSVAGRMMT-RRIMGK-ASFVTL--QDV----GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKT----QTG 133 (504)
T ss_dssp EEEEEEEEEE-EEEETT-EEEEEE--EET----TEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEEC----TTC
T ss_pred EEEEEEEEEE-EecCCC-cEEEEE--EEC----CeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEec----CCc
Confidence 5999999975 333354 444444 332 33688888654 211 1 34789999999999999864 345
Q ss_pred cEEEEEEEEEEEEEeeecCC
Q 024247 145 KLCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 145 ~kr~~~eVvV~~v~Fl~~~~ 164 (270)
.++|.|+++..|.+..
T Consensus 134 ----e~ei~~~~i~vl~~a~ 149 (504)
T 1e1o_A 134 ----ELSIHCTELRLLTKAL 149 (504)
T ss_dssp ----CEEEEEEEEEEEECCS
T ss_pred ----eEEEEEEEEEEecccC
Confidence 3699999999998763
No 60
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=67.44 E-value=17 Score=32.20 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=48.2
Q ss_pred CCcceEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCe-eEEEEEechhHHH--HHhhcCCCCeEEEEEEeeecceecC
Q 024247 66 QLENSVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGF-DILLAVGGDMAQL--CQKHLKPNDFIYVTGQLHSYSKVDK 142 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~-wI~Vv~wGkLAE~--~~~yLkKGd~V~VsGrL~t~sy~dk 142 (270)
.-++.|.|+|.|.. .+..+. ...++| .+ .|- -|.|..|....+. -...++.|+.|.|.|+|+..
T Consensus 69 ~~i~~V~ivG~V~~-i~~~~~-~~~~~L--~D----~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f----- 135 (270)
T 2pi2_A 69 VEISQVTIVGIIRH-AEKAPT-NIVYKI--DD----MTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSF----- 135 (270)
T ss_dssp EEESEEEEEEEEEE-EEECSS-EEEEEE--EC----SSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEE-----
T ss_pred EEEEEEEEEEEEEE-EEeccc-eEEEEE--EC----CCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEec-----
Confidence 33556666666653 221122 222222 23 344 6899999875432 34678999999999999864
Q ss_pred CCcEEEEEEEEEEEEEeeecCC
Q 024247 143 NGKLCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 143 dG~kr~~~eVvV~~v~Fl~~~~ 164 (270)
.|++ +|.+..|.-+...+
T Consensus 136 ~g~~----qi~i~~ir~v~d~n 153 (270)
T 2pi2_A 136 QNKK----SLVAFKIMPLEDMN 153 (270)
T ss_dssp TTEE----EEEEEEEEECSCTH
T ss_pred CCee----EEEEEEEEecCCHh
Confidence 2433 67777777776544
No 61
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=66.69 E-value=21 Score=31.55 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=61.0
Q ss_pred cccCCCCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhh---cCCCCeEEEEEE
Q 024247 61 IKWQPQLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKH---LKPNDFIYVTGQ 133 (270)
Q Consensus 61 I~~~~~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~y---LkKGd~V~VsGr 133 (270)
+=|.--=+|.|.++|.|..--+ ..|.-..+..+.+++... ....|.|.+--..+-.+.-- .--|..|-|.|.
T Consensus 78 ~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG-~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~ 156 (220)
T 3kf8_A 78 VLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIG-IDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGE 156 (220)
T ss_dssp EEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCS-SSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEE
T ss_pred EEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCC-CCceEEEEecHHHhhccCccccccCCCeEEEEEEE
Confidence 3344445899999999997555 224345556677777652 23456676654432222111 225999999999
Q ss_pred eeeccee-cCCCcEEEEEEEEEEEEEeeecC
Q 024247 134 LHSYSKV-DKNGKLCLCYKVVVEDFNYVREC 163 (270)
Q Consensus 134 L~t~sy~-dkdG~kr~~~eVvV~~v~Fl~~~ 163 (270)
+.+..=. ..+|. ..-||.|+.|.+|...
T Consensus 157 i~~~r~~~~~~~~--~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 157 IYNWYDSINVSKK--PDRELKVSKITVLSHR 185 (220)
T ss_dssp EEECCCSTTTTSC--CCEEEEEEEEEEEESS
T ss_pred EEeeccccccccc--cceEEEEEEEEEeccC
Confidence 9864110 12222 2239999999999876
No 62
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=64.01 E-value=51 Score=35.22 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=58.5
Q ss_pred CCcceEEEEEEcCCCCc----cCCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHH--HHhhcCCCCeEEEEEEeeecce
Q 024247 66 QLENSVNFIGTVVRPLE----RSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQL--CQKHLKPNDFIYVTGQLHSYSK 139 (270)
Q Consensus 66 ~l~NsV~LIGrLg~DPE----~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~--~~~yLkKGd~V~VsGrL~t~sy 139 (270)
.-.+.|++.|.|-. .| .+|+.+..+.| ++. |+-|.|..|-+-.+. ..+.+++|+.|.|.|.++.++|
T Consensus 15 ~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~--td~----~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~ 87 (1041)
T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKI--TDY----TNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTF 87 (1041)
T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEE--ECS----SCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETT
T ss_pred cccceEEEEEEEEE-EEEEEccCCCEEEEEEE--EeC----CCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccC
Confidence 45788999999874 44 68887765554 442 556888888655443 4577999999999999999888
Q ss_pred ecCCCcEEEEEEEEEEEEEeeec
Q 024247 140 VDKNGKLCLCYKVVVEDFNYVRE 162 (270)
Q Consensus 140 ~dkdG~kr~~~eVvV~~v~Fl~~ 162 (270)
.. . ..+.+++|.-+..
T Consensus 88 ~~---~----~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 88 VR---D----LVIIANDLNEIAA 103 (1041)
T ss_dssp TT---E----EEEEEEEEEEECC
T ss_pred Cc---c----eEEEeeeeEEecc
Confidence 42 1 2356666666654
No 63
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=59.74 E-value=28 Score=29.66 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=37.5
Q ss_pred eEEEEEEcC--CCCc----c-CCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 024247 70 SVNFIGTVV--RPLE----R-SNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQ 133 (270)
Q Consensus 70 sV~LIGrLg--~DPE----~-~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGr 133 (270)
.|.+||.|. .+++ . +|+......+.+.+.. ..-|+|++||+.|+.+. ...|+.|.+.|-
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~s---g~~i~~tLWg~~a~~~~--~~~~~vv~i~~~ 205 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTS---GKVVTATLWGEDADKFD--GSRQPVLAIKGA 205 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTT---CCEEEEEEEHHHHHHCC--CTTCCEEEEEEE
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCC---CCEEEEEEEchhhhhcc--cCCCCEEEEEEE
Confidence 588899887 2333 2 5754433333333321 22489999999999764 578888887774
No 64
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=58.05 E-value=14 Score=32.90 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=37.8
Q ss_pred eeEEEEEechhHHHHHhhcCCCCeEEEEEEeeecceecCCCcEEEEEEEEEEEEEeee
Q 024247 104 FDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVR 161 (270)
Q Consensus 104 ~wI~Vv~wGkLAE~~~~yLkKGd~V~VsGrL~t~sy~dkdG~kr~~~eVvV~~v~Fl~ 161 (270)
--+.|++-++|.+ .++.||+|.|.|-+.... +.+...+.+-|.|..|....
T Consensus 198 rsi~V~l~~dLvd----~~~PGDrV~vtGI~~~~~---~~~~~~~~~~l~a~~I~~~~ 248 (279)
T 1ltl_A 198 RQITVVLEDDLVD----TLTPGDIVRVTGTLRTVR---DERTKRFKNFIYGNYTEFLE 248 (279)
T ss_dssp CEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE---ETTTTEEEEEEEEEECCBC-
T ss_pred eEEEEEEcccccC----ccCCCCEEEEEEEEEEee---CCCCceEEEEEEEEEEEEec
Confidence 4588999999854 678999999999988753 23455667777777776543
No 65
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=57.15 E-value=28 Score=26.69 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=39.7
Q ss_pred cceEEEEEEcCCCCc-cCCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEEE-EEeee
Q 024247 68 ENSVNFIGTVVRPLE-RSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVT-GQLHS 136 (270)
Q Consensus 68 ~NsV~LIGrLg~DPE-~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~Vs-GrL~t 136 (270)
...|.++|.|-.--+ .+|......+|+ + +|--|++++|++- ....++.|+.|.|. |+...
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~--D----eTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~ 76 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLG--D----ETGIIKFTIWKNA---ELPLLEQGESYLLRSVVVGE 76 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEE--C----TTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEE--C----CCCeEEEEEECcc---cccccCCCCEEEEEEEEEEE
Confidence 467888888875333 334433334443 2 3446999999943 23589999999999 66664
No 66
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=55.14 E-value=9.1 Score=31.60 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=41.1
Q ss_pred cceEEEEEEcCCCCccCCeeEEEEEEEEcCCC--------C---C--------CCeeEEEEEechhHHHHHhhcCCCCeE
Q 024247 68 ENSVNFIGTVVRPLERSNVFGVYTLLHVKNSH--------S---D--------RGFDILLAVGGDMAQLCQKHLKPNDFI 128 (270)
Q Consensus 68 ~NsV~LIGrLg~DPE~~G~~va~fsLAV~~~~--------~---~--------~t~wI~Vv~wGkLAE~~~~yLkKGd~V 128 (270)
..-+-|+|-|.+.+..++. ++|.|++.- . . ...=++|++|+.-|..|.++|+.||-|
T Consensus 14 ~~F~Dl~~qVv~~~~~~~~----~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~ar~~lk~Gd~v 89 (143)
T 4hik_A 14 HQRCSFYAQVIKTWYSDKN----FTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRNYIKEGDYV 89 (143)
T ss_dssp SCEEEEEEEEEEEEECSSC----EEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHHHTTTCCTTCEE
T ss_pred CCeEEEEEEEEEEEcCCCe----EEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHHHHHhhCCCCCEE
Confidence 3457788888875543343 455555421 0 1 112379999999999999999999999
Q ss_pred EEE
Q 024247 129 YVT 131 (270)
Q Consensus 129 ~Vs 131 (270)
.+.
T Consensus 90 ~L~ 92 (143)
T 4hik_A 90 VMK 92 (143)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 67
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=38.01 E-value=35 Score=32.13 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=36.4
Q ss_pred eEEEEEEcCC--CCc-----cCCeeEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHh--hcCCCCeEEEEEE
Q 024247 70 SVNFIGTVVR--PLE-----RSNVFGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQK--HLKPNDFIYVTGQ 133 (270)
Q Consensus 70 sV~LIGrLg~--DPE-----~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~--yLkKGd~V~VsGr 133 (270)
.|.+||.|.. ++. .+|+....-.+.+.+. ...-|+|++||+.|+.+.. ....|+.|.|.|-
T Consensus 135 ~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~---sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~ 204 (444)
T 4gop_C 135 QCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQ---GNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGV 204 (444)
T ss_dssp CCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECT---TCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESC
T ss_pred ceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeC---CCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeE
Confidence 4667777653 222 2565333222222332 1236899999999997652 3678898888873
No 68
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=35.99 E-value=54 Score=32.95 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=52.9
Q ss_pred eEEEEEEcCCCCccCCeeEEEEEEEEcCCCCCCCeeEEEEEechh----HHHHHhhcCCCCeEEEEEEeeeccee-----
Q 024247 70 SVNFIGTVVRPLERSNVFGVYTLLHVKNSHSDRGFDILLAVGGDM----AQLCQKHLKPNDFIYVTGQLHSYSKV----- 140 (270)
Q Consensus 70 sV~LIGrLg~DPE~~G~~va~fsLAV~~~~~~~t~wI~Vv~wGkL----AE~~~~yLkKGd~V~VsGrL~t~sy~----- 140 (270)
.|+|.|+|.+- . ++ + | |.+++. +-.++|++-.+. +-..++.|..|+.|.|+|.+..+.-.
T Consensus 26 ~V~l~GwV~~~-R-~~---~-F-i~LrD~----~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~ 94 (617)
T 4ah6_A 26 EVTLCGWIQYR-R-QN---T-F-LVLRDF----DGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPK 94 (617)
T ss_dssp EEEEEEEECCC-C-TT---T-E-EEEECS----SCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTT
T ss_pred EEEEEEEeeee-c-Ce---E-E-EEEEeC----CcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCcc
Confidence 69999999852 2 12 1 2 223443 235788876543 12345789999999999999865311
Q ss_pred cCCCcEEEEEEEEEEEEEeeecCC
Q 024247 141 DKNGKLCLCYKVVVEDFNYVRECG 164 (270)
Q Consensus 141 dkdG~kr~~~eVvV~~v~Fl~~~~ 164 (270)
.+.| .+||.|+++..|....
T Consensus 95 ~~tg----eiEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 95 MPTG----EIEIKVKTAELLNACK 114 (617)
T ss_dssp STTT----TEEEEEEEEEEEECBC
T ss_pred CCCC----cEEEEEeEEEEeecCC
Confidence 1123 3799999999998765
No 69
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=30.40 E-value=60 Score=26.60 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=38.4
Q ss_pred cceEEEEEEcCCCC------c---cCCe--------eEEEEEEEEcCCCCCCCeeEEEEEechhHHHHHhhcCCCCeEEE
Q 024247 68 ENSVNFIGTVVRPL------E---RSNV--------FGVYTLLHVKNSHSDRGFDILLAVGGDMAQLCQKHLKPNDFIYV 130 (270)
Q Consensus 68 ~NsV~LIGrLg~DP------E---~~G~--------~va~fsLAV~~~~~~~t~wI~Vv~wGkLAE~~~~yLkKGd~V~V 130 (270)
++.|+|+|+|-.-- + .+|. .++...|+ ++|--|.+++|++.|+ .|+.||.|.+
T Consensus 26 ~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVg------DeTG~I~ftlW~e~~~----~l~~Gd~v~i 95 (145)
T 1wjj_A 26 TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG------DETGCILFTARNDQVD----LMKPGATVIL 95 (145)
T ss_dssp CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEE------CSSCEEEEEECTTHHH----HTCTTCEEEE
T ss_pred CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEE------cCCcEEEEEEecCCcC----cCCCCCEEEE
Confidence 45677877775311 1 2342 46666665 2466799999999776 4789999999
Q ss_pred EEEe
Q 024247 131 TGQL 134 (270)
Q Consensus 131 sGrL 134 (270)
.+-.
T Consensus 96 ~na~ 99 (145)
T 1wjj_A 96 RNSR 99 (145)
T ss_dssp EEEE
T ss_pred eccE
Confidence 8743
No 70
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=22.33 E-value=2.7e+02 Score=21.70 Aligned_cols=41 Identities=15% Similarity=0.386 Sum_probs=30.3
Q ss_pred hHHHHHhhcCCCCeEEEEEEeeecceecCCCcEEEEEEEEEEEEEeeec
Q 024247 114 MAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRE 162 (270)
Q Consensus 114 LAE~~~~yLkKGd~V~VsGrL~t~sy~dkdG~kr~~~eVvV~~v~Fl~~ 162 (270)
+++.+.++++ .++.+.|+|.++..-|. .+.++++++.|-..
T Consensus 43 i~~aL~~~vk--sk~sfKG~L~tYrfcDn------VWTf~lkd~~fk~~ 83 (108)
T 1nvp_D 43 INAALAQRVR--NRVNFRGSLNTYRFCDN------VWTFVLNDVEFREV 83 (108)
T ss_dssp HHHHHHHTCC--CEEEEEEEEEEEEEETT------EEEEEEEEEEEECS
T ss_pred HHHHHHHHhc--cCCeEeeccCCccccCc------EEEEEEeceEEEec
Confidence 4566666654 66888999999888764 67778888887653
Done!