BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024249
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 465 bits (1197), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/270 (82%), Positives = 246/270 (91%), Gaps = 1/270 (0%)
Query: 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKT 60
M VEKVPDSTYDM+GGL +QIKEIKEVIELP+KHPELFESLGIAQPKGV+LYGPPGTGKT
Sbjct: 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKT 196
Query: 61 LLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 120
LLARAVAHHTDC FIRVSG+ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS
Sbjct: 197 LLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGST 256
Query: 121 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIE 180
R+E GSG GDSEVQRTMLELLNQLDGFE S IK++MATNR+DILD ALLRPGRIDRKIE
Sbjct: 257 RVE-GSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIE 315
Query: 181 FPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240
FP P+ +R +IL+IHSR+MNL RGI+L+K+AEKMNG SGA++K VCTEAGM+ALRERRI
Sbjct: 316 FPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRI 375
Query: 241 HVTQEDFEMAVAKVMKKETEKNMSLRKLWK 270
HVTQEDFE+AV KVM K E +S+ KL+K
Sbjct: 376 HVTQEDFELAVGKVMNKNQETAISVAKLFK 405
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 320 bits (821), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 152/255 (59%), Positives = 208/255 (81%), Gaps = 1/255 (0%)
Query: 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKT 60
M+V++ P+ Y+ IGGL++Q++EI+EV+ELP+KHPELFE +GI PKG+LLYGPPGTGKT
Sbjct: 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65
Query: 61 LLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 120
LLA+AVA T+ TFIRV GSELV+K+IGEG+ +V+++F +A+E APSIIF+DEID+I +
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125
Query: 121 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIE 180
R ++ +G GD EVQRT+++LL ++DGF+A +K++ ATNR DILD A+LRPGR DR IE
Sbjct: 126 RTDALTG-GDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIE 184
Query: 181 FPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240
P P+E+ RL+ILKIH+R+MNL ++L++IA+ G GAELKA+CTEAGM A+RE R
Sbjct: 185 VPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244
Query: 241 HVTQEDFEMAVAKVM 255
+VT +DF AV K+M
Sbjct: 245 YVTMDDFRKAVEKIM 259
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 320 bits (820), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 150/263 (57%), Positives = 206/263 (78%), Gaps = 1/263 (0%)
Query: 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKT 60
MK++K P +Y IGGL+ QI+EIKE +ELP+ HPEL+E +GI PKGV+LYG PGTGKT
Sbjct: 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKT 230
Query: 61 LLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 120
LLA+AVA+ T TF+R+ GSEL+QKY+G+G R+ R++F +A E+APSI+F+DEID+IG+
Sbjct: 231 LLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK 290
Query: 121 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIE 180
R +S SG G+ E+QRTMLELLNQLDGF+ +KV+MATN+I+ LD AL+RPGRIDRKI
Sbjct: 291 RYDSNSG-GEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKIL 349
Query: 181 FPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240
F NP+ ++ IL IH+ +MNL ++L+ + + SGA+++A+CTEAG+ ALRERR+
Sbjct: 350 FENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM 409
Query: 241 HVTQEDFEMAVAKVMKKETEKNM 263
VT EDF+ A +VMK + E+N+
Sbjct: 410 QVTAEDFKQAKERVMKNKVEENL 432
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 315 bits (806), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/255 (60%), Positives = 194/255 (76%), Gaps = 1/255 (0%)
Query: 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKT 60
M VE+ PD TY +GG QI++++EV+ELP+ PE F +LGI PKG+LLYGPPGTGKT
Sbjct: 198 MTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKT 257
Query: 61 LLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 120
L ARAVA+ TD TFIRV GSELVQKY+GEG+RMVRELF MAR IIF DEID++G A
Sbjct: 258 LCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGA 317
Query: 121 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIE 180
R + G+G GD+EVQRTMLEL+ QLDGF+ IKV+ ATNR + LD ALLRPGRIDRK+E
Sbjct: 318 RFDDGAG-GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVE 376
Query: 181 FPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240
F P+ E R +I +IHS+ M++ RGI + I+ ++GAEL++VCTEAGMFA+R RR
Sbjct: 377 FSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436
Query: 241 HVTQEDFEMAVAKVM 255
T++DF AV KV+
Sbjct: 437 VATEKDFLKAVDKVI 451
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 293 bits (750), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 139/260 (53%), Positives = 196/260 (75%), Gaps = 1/260 (0%)
Query: 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKT 60
M+V++ P TY +GGLD+QI+E+ E I LP+K + F+ +GI PKG L+YGPPGTGKT
Sbjct: 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKT 229
Query: 61 LLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 120
LLARA A T+ TF++++ +LVQ YIGEG+++VR+ F +A+E AP+IIF+DE+D+IG+
Sbjct: 230 LLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTK 289
Query: 121 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIE 180
R +S +GD EVQRTMLELLNQLDGF + +++KVL ATNR+D+LD ALLR GR+DRKIE
Sbjct: 290 RFDS-EKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
Query: 181 FPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240
FP P+E+SR IL+IHSR+M I+ +++A + +GA+LKAV EAGM ALR +
Sbjct: 349 FPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS 408
Query: 241 HVTQEDFEMAVAKVMKKETE 260
V EDF +++V ++++
Sbjct: 409 SVKHEDFVEGISEVQARKSK 428
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/260 (51%), Positives = 184/260 (70%), Gaps = 2/260 (0%)
Query: 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 69
T+D IGGL +QI+E++EVIELP+K+PE+F+ +GI PKGVLLYGPPGTGKTLLA+AVA
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 70 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129
FI S +V KYIGE +R++RE+F A+EH P IIFMDE+D+IG R G+ +
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGT-SA 297
Query: 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 189
D E+QRT++ELL Q+DGF+ + K++MATNR D LD ALLRPGR+DRK+E P PNE R
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357
Query: 190 LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 249
L+I KIH+ ++ D + + +G +GA+++ TEAG FA+R+ R H+ +D
Sbjct: 358 LEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMK 417
Query: 250 AVAKVMK-KETEKNMSLRKL 268
AV KV + K+ E + +KL
Sbjct: 418 AVRKVAEVKKLEGTIEYQKL 437
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/255 (52%), Positives = 181/255 (70%), Gaps = 4/255 (1%)
Query: 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 66
PD TY +GGLD Q +EI+E +ELP+ +L+E +GI P+GVLLYGPPGTGKT+L +AV
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 67 AHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126
A+ T FIRV+GSE V KY+GEG RMVR++F +ARE+APSIIF+DE+DSI + R ++ +
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 286
Query: 127 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNE 186
G+ D EVQR ++ELL Q+DGF+ S +KV+MATNR D LD ALLRPGR+DRKIEFP+ +
Sbjct: 287 GS-DREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345
Query: 187 --ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 244
E RL I + +M+L DL + + + SGA + A+ EAG+ A+R+ R + Q
Sbjct: 346 RRERRL-IFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQ 404
Query: 245 EDFEMAVAKVMKKET 259
D E A A +K +
Sbjct: 405 SDLEEAYATQVKTDN 419
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 167/254 (65%), Gaps = 2/254 (0%)
Query: 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 69
T+ +GG ++ I+E+KEV+E +K P F +G PKG+LL GPPGTGKTLLARAVA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 70 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129
+ F +SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R +G G G
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG-AGLGGG 131
Query: 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 189
E ++T+ +LL ++DGF++ I V+ ATNR DILD ALLRPGR D+KI P+ R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 190 LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 249
IL+IH+R L ++L+ IA++ G GA+L+ + EA + A RE R +T +DFE
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 250 AVAKVMKKETEKNM 263
A+ +V+ K++
Sbjct: 252 AIDRVIAGPARKSL 265
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 166/254 (65%), Gaps = 2/254 (0%)
Query: 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 69
T+ +GG ++ I+E+KEV+E +K P F +G PKG+LL GPPGTG TLLARAVA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 70 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129
+ F +SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R +G G G
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG-AGLGGG 131
Query: 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 189
E ++T+ +LL ++DGF++ I V+ ATNR DILD ALLRPGR D+KI P+ R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 190 LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 249
IL+IH+R L ++L+ IA++ G GA+L+ + EA + A RE R +T +DFE
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 250 AVAKVMKKETEKNM 263
A+ +V+ K++
Sbjct: 252 AIDRVIAGPARKSL 265
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 70
YD IGG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 71 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 190
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 191 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 251 VAKVM 255
A+VM
Sbjct: 438 DAEVM 442
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 148/232 (63%), Gaps = 1/232 (0%)
Query: 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLL 62
V +VP T++ IGGL+ +E++E+++ P++HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 63 ARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 122
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI AR
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 123 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 182
+ G + R + ++L ++DG + ++ ATNR DI+D A+LRPGR+D+ I P
Sbjct: 588 GNIGDGGGA-ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
Query: 183 NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFA 234
P+E+SR+ ILK + R+ + + +DL+ +A+ NG SGA+L +C A A
Sbjct: 647 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 70
YD IGG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 71 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 190
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 191 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 251 VAKVM 255
A+VM
Sbjct: 438 DAEVM 442
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 70
YD IGG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 71 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 190
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 191 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 251 VAKVM 255
A+VM
Sbjct: 438 DAEVM 442
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 70
YD IGG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 71 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 190
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 191 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 251 VAKVM 255
A+VM
Sbjct: 438 DAEVM 442
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 70
YD +GG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 71 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 190
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 191 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 251 VAKVM 255
A+VM
Sbjct: 438 DAEVM 442
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 148/232 (63%), Gaps = 1/232 (0%)
Query: 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLL 62
V +VP T++ IGGL+ +E++E+++ P++HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 63 ARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 122
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI AR
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 123 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 182
+ G + R + ++L ++DG + ++ ATNR DI+D A+LRPGR+D+ I P
Sbjct: 588 GNIGDGGGA-ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
Query: 183 NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFA 234
P+E+SR+ ILK + R+ + + +DL+ +A+ NG SGA+L +C A A
Sbjct: 647 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 157/247 (63%), Gaps = 2/247 (0%)
Query: 9 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 68
+T+ + G D+ +E+ E++E ++ P F+ LG PKGVL+ GPPGTGKTLLA+A+A
Sbjct: 9 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 69 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 128
F +SGS+ V+ ++G G+ VR++F A++ AP IIF+DEID++G R +G G
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR-GAGLGG 126
Query: 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 188
G E ++T+ ++L ++DGFE + I V+ ATNR D+LD ALLRPGR DR++ P+
Sbjct: 127 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186
Query: 189 RLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFE 248
R ILK+H RR+ L ID IA G SGA+L + EA +FA R + V+ +FE
Sbjct: 187 REQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 246
Query: 249 MAVAKVM 255
A K+M
Sbjct: 247 KAKDKIM 253
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 70
YD +GG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 71 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 190
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 191 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 251 VAKVM 255
A+VM
Sbjct: 438 DAEVM 442
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 197 bits (500), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 160/246 (65%), Gaps = 2/246 (0%)
Query: 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 66
P+ + + G ++ +E+ E+++ +K+PE + +LG PKGVLL GPPGTGKTLLA+AV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 67 AHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126
A F + GS ++ ++G G+ VR+LF A++ APSIIF+DEID+IG +R G
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 127 GNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPN 185
+G+ E ++T+ +LL ++DGF + N + VL ATNR +ILD AL+RPGR DR++ P+
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 186 EESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 245
R++ILK+H + + L ++L+++A+ G +GA+L + EA + A R + V Q+
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQ 244
Query: 246 DFEMAV 251
+ AV
Sbjct: 245 HLKEAV 250
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 196 bits (499), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 148/232 (63%), Gaps = 1/232 (0%)
Query: 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLL 62
V +VP T++ IGGL+ +E++E+++ P++HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 63 ARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 122
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI AR
Sbjct: 66 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125
Query: 123 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 182
+ G + R + ++L ++DG + ++ ATNR DI+D A+LRPGR+D+ I P
Sbjct: 126 GNIGDGGGA-ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184
Query: 183 NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFA 234
P+E+SR+ ILK + R+ + + +DL+ +A+ NG SGA+L +C A A
Sbjct: 185 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 165/261 (63%), Gaps = 2/261 (0%)
Query: 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLAR 64
+ P T+ + G ++ +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 24 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82
Query: 65 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124
AVA FI SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R S
Sbjct: 83 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR-GS 141
Query: 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 184
G G G+ E ++T+ +LL ++DGFE I V+ ATNR DILD ALLRPGR DR+I P
Sbjct: 142 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201
Query: 185 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 244
+ + R IL+IH+R L +DL +A++ G GA+L+ + EA + A RE R +T
Sbjct: 202 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 261
Query: 245 EDFEMAVAKVMKKETEKNMSL 265
+D E A +VM +K++ L
Sbjct: 262 KDLEEAADRVMMLPAKKSLVL 282
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 165/261 (63%), Gaps = 2/261 (0%)
Query: 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLAR 64
+ P T+ + G ++ +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 65 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124
AVA FI SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R S
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR-GS 150
Query: 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 184
G G G+ E ++T+ +LL ++DGFE I V+ ATNR DILD ALLRPGR DR+I P
Sbjct: 151 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 185 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 244
+ + R IL+IH+R L +DL +A++ G GA+L+ + EA + A RE R +T
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 270
Query: 245 EDFEMAVAKVMKKETEKNMSL 265
+D E A +VM +K++ L
Sbjct: 271 KDLEEAADRVMMLPAKKSLVL 291
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 158/248 (63%), Gaps = 2/248 (0%)
Query: 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLAR 64
+ P T+ + G ++ +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 65 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124
AVA FI SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R S
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR-GS 150
Query: 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 184
G G G+ E ++T+ +LL ++DGFE I V+ ATNR DILD ALLRPGR DR+I P
Sbjct: 151 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 185 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 244
+ + R IL+IH+R L +DL +A++ G GA+L+ + EA + A RE R +T
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 270
Query: 245 EDFEMAVA 252
+D E A +
Sbjct: 271 KDLEEAAS 278
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 158/248 (63%), Gaps = 2/248 (0%)
Query: 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLAR 64
+ P T+ + G ++ +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67
Query: 65 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124
AVA FI SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R S
Sbjct: 68 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR-GS 126
Query: 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 184
G G G+ E ++T+ +LL ++DGFE I V+ ATNR DILD ALLRPGR DR+I P
Sbjct: 127 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186
Query: 185 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 244
+ + R IL+IH+R L +DL +A++ G GA+L+ + EA + A RE R +T
Sbjct: 187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 246
Query: 245 EDFEMAVA 252
+D E A +
Sbjct: 247 KDLEEAAS 254
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 155/260 (59%), Gaps = 3/260 (1%)
Query: 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 69
++ + G+ + E++E ++ +K PE F LG PKG LL GPPG GKTLLA+AVA
Sbjct: 4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 70 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129
F+ ++G+E V+ G G+ VR LF AR AP I+++DEID++G R + SG
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFS 122
Query: 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 189
++E ++T+ +LL ++DG ++ + VL +TNR DILD AL+RPGR+DR + P + R
Sbjct: 123 NTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
Query: 190 LDILKIHSRRMNLMRGIDL--KKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDF 247
+I + H + + L + +++AE G SGA++ +C EA + A RE V +F
Sbjct: 183 REIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNF 242
Query: 248 EMAVAKVMKKETEKNMSLRK 267
E AV +V+ +K+ L K
Sbjct: 243 EYAVERVLAGTAKKSKILSK 262
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 159/273 (58%), Gaps = 20/273 (7%)
Query: 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARA 65
VP+ T+ IG L+ +E+ I P+++P+ F++LG+ P GVLL GPPG GKTLLA+A
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63
Query: 66 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125
VA+ + FI V G EL+ Y+GE R VR++F A+ AP +IF DE+D++ R +
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE 123
Query: 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPN 185
+G R + +LL ++DG EA ++ ++ ATNR DI+D A+LRPGR+D+ + P
Sbjct: 124 TGAS----VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPP 179
Query: 186 EESRLDILKIHSR---RMNLMRGIDLKKIAE--KMNGASGAELKAVCTEAGMFALRER-- 238
RL ILK ++ + L ++L+ IA + + +GA+L A+ EA + ALR+
Sbjct: 180 PADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239
Query: 239 ---------RIHVTQEDFEMAVAKVMKKETEKN 262
+ V+ + FE A KV ++K+
Sbjct: 240 RQKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 272
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 153/279 (54%), Gaps = 24/279 (8%)
Query: 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 66
P ++ I G++ IKE++ P+ P++F L PKG+LL+GPPGTGKTL+ + +
Sbjct: 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCI 137
Query: 67 AHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126
A + TF +S S L K++GEG +MVR LF +AR P++IF+DEIDS+ S R
Sbjct: 138 ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR----- 192
Query: 127 GNGDSEVQRTM-LELLNQLDGFEASNKIKVLM--ATNRIDILDQALLRPGRIDRKIEFPN 183
G+G+ E R + E L QLDG S++ ++L+ ATNR +D+A R R+ +++ P
Sbjct: 193 GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPL 250
Query: 184 PNEESRLDI-LKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH- 241
P +R I + + S+ + ++++I ++ + SGA++ +C EA + +R +
Sbjct: 251 PEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310
Query: 242 -----------VTQEDFEMAVAKVMKKETEKNMSLRKLW 269
+ DFE A V + K++ L + W
Sbjct: 311 IATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENW 349
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 136/235 (57%), Gaps = 12/235 (5%)
Query: 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 65
P+ + + GL+ + +KE + LPIK P LF G P +G+LL+GPPGTGK+ LA+A
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKA 64
Query: 66 VAHH-TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124
VA + TF +S S+LV K++GE ++V+ LF +ARE+ PSIIF+DEIDS+ +R E
Sbjct: 65 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE- 123
Query: 125 GSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPN 183
N +R E L Q+ G N I VL ATN +LD A+ R R +++I P
Sbjct: 124 ---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPL 178
Query: 184 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 237
P +R + K+H N + D +++ K +G SGA++ + +A M +R+
Sbjct: 179 PEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 142/230 (61%), Gaps = 10/230 (4%)
Query: 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 70
+D I G D + ++E++ LP PELF L A +G+LL+GPPG GKT+LA+AVA +
Sbjct: 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAES 172
Query: 71 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130
+ TF +S + L KY+GEG ++VR LF +ARE PSIIF+D++DS+ R E G D
Sbjct: 173 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE---GEHD 229
Query: 131 SEVQRTMLELLNQLDGFEASNKIKVLM--ATNRIDILDQALLRPGRIDRKIEFPNPNEES 188
+ +R E L + DG +++ +VL+ ATNR LD+A+LR R +++ PNEE+
Sbjct: 230 AS-RRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEET 286
Query: 189 R-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 237
R L + + ++ + + +L ++A +G SG++L A+ +A + +RE
Sbjct: 287 RLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 136/235 (57%), Gaps = 12/235 (5%)
Query: 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 65
P+ + + GL+ + +KE + LPIK P LF G P +G+LL+GPPGTGK+ LA+A
Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKA 186
Query: 66 VAHH-TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124
VA + TF +S S+LV K++GE ++V+ LF +ARE+ PSIIF+DEIDS+ +R E
Sbjct: 187 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE- 245
Query: 125 GSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPN 183
N +R E L Q+ G N I VL ATN +LD A+ R R +++I P
Sbjct: 246 ---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPL 300
Query: 184 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 237
P +R + ++H N + D +++ K +G SGA++ + +A M +R+
Sbjct: 301 PEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 141/235 (60%), Gaps = 13/235 (5%)
Query: 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 65
P+ ++ + GL+ + +KE + LP+K P LF+ G +P G+LLYGPPGTGK+ LA+A
Sbjct: 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 103
Query: 66 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125
VA + TF VS S+LV K++GE ++V++LF MARE+ PSIIF+D++D++ R
Sbjct: 104 VATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR---- 159
Query: 126 SGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 183
G G+SE R + ELL Q++G S + VL ATN LD A+ R R +R+I P
Sbjct: 160 -GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 216
Query: 184 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 237
P+ +R + +I+ +++ D + + G SG+++ V +A M +R+
Sbjct: 217 PDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 140/235 (59%), Gaps = 13/235 (5%)
Query: 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 65
P+ ++ + GL+ + +KE + LP+K P LF+ G +P G+LLYGPPGTGK+ LA+A
Sbjct: 22 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 79
Query: 66 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125
VA + TF VS S+LV K++GE ++V++LF MARE+ PSIIF+DE+D++ R
Sbjct: 80 VATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR---- 135
Query: 126 SGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 183
G G+SE R + ELL Q++G S + VL ATN LD A+ R R +R+I P
Sbjct: 136 -GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 192
Query: 184 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 237
P+ +R + +I+ ++ D + + G SG+++ V +A M +R+
Sbjct: 193 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 140/235 (59%), Gaps = 13/235 (5%)
Query: 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 65
P+ ++ + GL+ + +KE + LP+K P LF+ G +P G+LLYGPPGTGK+ LA+A
Sbjct: 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 70
Query: 66 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125
VA + TF VS S+LV K++GE ++V++LF MARE+ PSIIF+D++D++ R
Sbjct: 71 VATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR---- 126
Query: 126 SGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 183
G G+SE R + ELL Q++G S + VL ATN LD A+ R R +R+I P
Sbjct: 127 -GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 183
Query: 184 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 237
P+ +R + +I+ ++ D + + G SG+++ V +A M +R+
Sbjct: 184 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 140/235 (59%), Gaps = 13/235 (5%)
Query: 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 65
P+ ++ + GL+ + +KE + LP+K P LF+ G +P G+LLYGPPGTGK+ LA+A
Sbjct: 31 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 88
Query: 66 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125
VA + TF VS S+LV K++GE ++V++LF MARE+ PSIIF+D++D++ R
Sbjct: 89 VATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR---- 144
Query: 126 SGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 183
G G+SE R + ELL Q++G S + VL ATN LD A+ R R +R+I P
Sbjct: 145 -GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 201
Query: 184 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 237
P+ +R + +I+ ++ D + + G SG+++ V +A M +R+
Sbjct: 202 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 154/272 (56%), Gaps = 23/272 (8%)
Query: 14 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 73
I G D + ++E++ LP PELF L A KG+LL+GPPG GKTLLARAVA T
Sbjct: 23 IAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSAT 81
Query: 74 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133
F+ +S + L KY+G+G ++VR LF +AR PSIIF+DE+DS+ S R S
Sbjct: 82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEH----EAS 137
Query: 134 QRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 190
+R E L + DG + ++I VL ATNR LD+A LR R +++ P+E++R
Sbjct: 138 RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE 195
Query: 191 DIL-KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH-------- 241
+L ++ ++ + + L+++A+ +G SG++L A+ +A + +RE +
Sbjct: 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDIS 255
Query: 242 ----VTQEDFEMAVAKVMKKETEKNMSLRKLW 269
+T++DF ++ ++ + ++++ + W
Sbjct: 256 AMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 287
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 72/76 (94%)
Query: 184 PNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 243
PNEE+RLDILKIHSR+MNL RGI+L+KIAE M GASGAE+K VCTEAGM+ALRERR+HVT
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 244 QEDFEMAVAKVMKKET 259
QEDFEMAVAKVM+K++
Sbjct: 71 QEDFEMAVAKVMQKDS 86
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 68/78 (87%)
Query: 182 PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH 241
P PNEE+RLDILKIHSR+ NL RGI+L+KIAE GASGAE+K VCTEAG +ALRERR+H
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 242 VTQEDFEMAVAKVMKKET 259
VTQEDFE AVAKV +K++
Sbjct: 61 VTQEDFEXAVAKVXQKDS 78
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 51/72 (70%)
Query: 184 PNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 243
P+ E R +I +IHS+ M++ RGI + I+ ++GAEL++VCTEAGMFA+R RR T
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 67
Query: 244 QEDFEMAVAKVM 255
++DF AV KV+
Sbjct: 68 EKDFLKAVDKVI 79
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 63.9 bits (154), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 187 ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQED 246
E R +I +IHS+ ++ RGI + I+ ++GAEL++VCTEAG FA+R RR T++D
Sbjct: 4 EGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATEKD 63
Query: 247 FEMAVAKVM 255
F AV KV+
Sbjct: 64 FLKAVDKVI 72
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 192 ILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251
I + +MNL +DL+ + + SGA++ ++C E+GM A+RE R V +DFE A
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAY 68
Query: 252 AKVMKKETEKN 262
V+KK+ +++
Sbjct: 69 KTVIKKDEQEH 79
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVRELF----- 98
PK +L+ GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 99 -VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 141
+ A E I+F+DEID I SG+ VQR +L L+
Sbjct: 110 AIDAVEQ-NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 24 IKEVIELPIKHPELFESLGIAQPKG----VLLYGP-PGTGKTLLARAVAHHTDCTFIRVS 78
I E I LP E F+S+ KG ++L+ P PGTGKT +A+A+ H + + V+
Sbjct: 25 IDECI-LPAFDKETFKSI---TSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80
Query: 79 GSELVQKYI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 137
GS+ ++ G + R+ +I +DE D G A E QR +
Sbjct: 81 GSDCKIDFVRGPLTNFASAASFDGRQ---KVIVIDEFDRSGLA-----------ESQRHL 126
Query: 138 LELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHS 197
+ S+ +++ N ID + + L R+ I F P +E +++++K
Sbjct: 127 RSFMEAY-----SSNCSIIITANNIDGIIKPLQSRCRV---ITFGQPTDEDKIEMMKQMI 178
Query: 198 RRMN 201
RR+
Sbjct: 179 RRLT 182
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGEG-----SRMVRELFVMA 101
+LL GP G+GKTL+A+ +A H D + L + Y+GE +R+++
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 102 REHAPSIIFMDEIDSIGS-------ARMESGSGNGDSEVQRTMLELL 141
++ I+F+DEID I R SG G VQ+ +L+++
Sbjct: 134 QKAQKGIVFIDEIDKISRLSENRSITRDVSGEG-----VQQALLKIV 175
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP-- 106
++L+GPPGTGKT LA +A + + R+S + G + +RE AR++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 107 --SIIFMDEIDSIGSARMES 124
+I+F+DE+ ++ ++
Sbjct: 106 RRTILFVDEVHRFNKSQQDA 125
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGEG-----SRMVRELFVMAR 102
+LL GP G+GKTLLA +A D F + L + Y+GE +++++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 103 EHAPSIIFMDEIDSIGS-------ARMESGSGNGDSEVQRTMLELL 141
+ I+++D+ID I R SG G VQ+ +L+L+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEG-----VQQALLKLI 154
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGEG-----SRMVRELFVMAR 102
+LL GP G+GKTLLA +A D F + L + Y+GE +++++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 103 EHAPSIIFMDEIDSIGS-------ARMESGSGNGDSEVQRTMLELL 141
+ I+++D+ID I R SG G VQ+ +L+L+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEG-----VQQALLKLI 154
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVREL 97
PK +L+ GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVREL 97
PK +L+ GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVREL 97
PK +L+ GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 102
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVREL 97
PK +L+ GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 109
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVREL 97
PK +L GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 31/128 (24%)
Query: 50 LLYGPPGTGKTLLARAVAHH----------TDCTFIRVS-GSELV-QKYIGEGSRMVREL 97
LL G G GKT +A +A DCT + GS L KY G+ + + L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 98 FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 157
+ SI+F+DEI +I A SG Q+D A+N IK L+
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGG----------------QVD---AANLIKPLL 311
Query: 158 ATNRIDIL 165
++ +I ++
Sbjct: 312 SSGKIRVI 319
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 42 GIAQPK----GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGSRMV 94
G+ PK + GP G GKT LARA+A + + IR+ SE ++K+ G ++
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572
Query: 95 RELFVMAREHAPSIIFMDEID 115
++ R S++ +D I+
Sbjct: 573 EKV----RRKPYSVVLLDAIE 589
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 22 KEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI------ 75
KEI+ VIE+ L +L G PG GKT +A +A +
Sbjct: 187 KEIQRVIEV----------LSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236
Query: 76 -RVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMD 112
RV ++ KY GE ++++ R+ I+F+D
Sbjct: 237 KRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID 274
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 47 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKYIGEGSRMV----RELFVM 100
+ VLL GPPGTGKT LA A+A + F GSE+ I + + R + +
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLR 137
Query: 101 AREHAPSII---FMDEIDSIGSARMESG 125
+E P II + ++D + +AR + G
Sbjct: 138 IKEGPPGIIQDVTLHDLD-VANARPQGG 164
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 47 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKYI 87
+ VLL GPPGTGKT LA A+A + F + GSE+ I
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI 106
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIG----EGSRMVRELFVMAREH 104
VLL GPP +GKT LA +A ++ FI++ + K IG + ++++F A +
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKS 123
Query: 105 APSIIFMDEIDSI 117
S + +D+I+ +
Sbjct: 124 QLSCVVVDDIERL 136
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIG----EGSRMVRELFVMAREH 104
VLL GPP +GKT LA +A ++ FI++ + K IG + ++++F A +
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKS 122
Query: 105 APSIIFMDEIDSI 117
S + +D+I+ +
Sbjct: 123 QLSCVVVDDIERL 135
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 187 ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQED 246
E RL I + +M+L DL + + + SGA + A+ EAG+ A+R+ R + Q D
Sbjct: 2 ERRL-IFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSD 60
Query: 247 FEMAVAKVMKKE 258
E A A +K +
Sbjct: 61 LEEAYATQVKTD 72
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 108
VLL GPPG GKT LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 109 IFMDEIDSIGSA 120
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 108
VLL GPPG GKT LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 109 IFMDEIDSIGSA 120
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 108
VLL GPPG GKT LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 109 IFMDEIDSIGSA 120
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 108
VLL GPPG GKT LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 109 IFMDEIDSIGSA 120
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 108
VLL GPPG GKT LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 109 IFMDEIDSIGSA 120
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 32 IKHPELFESLGIAQPKGVLLYGPPGTGKTLL 62
IKH ++F L + +G++L GPPG+GKT++
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 32 IKHPELFESLGIAQPKGVLLYGPPGTGKTLL 62
IKH ++F L + +G++L GPPG+GKT++
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 40/147 (27%)
Query: 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELP-IKHPELFESLGIAQPKGVLLYGPPGTGKTL 61
VEK T D + G D+ I+ +K +E I H +L GPPGTGKT
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH--------------LLFSGPPGTGKTA 53
Query: 62 LARAVA-----HHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP------SIIF 110
A A+A + FI ++ S+ G +VR AP IIF
Sbjct: 54 TAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFARTAPIGGAPFKIIF 107
Query: 111 MDEIDSIGSARMESGSGNGDSEVQRTM 137
+DE D++ + + + ++RTM
Sbjct: 108 LDEADAL--------TADAQAALRRTM 126
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVS 78
+ L GPPG GKT LA+++A F+R+S
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 40/147 (27%)
Query: 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELP-IKHPELFESLGIAQPKGVLLYGPPGTGKTL 61
VEK T D + G D+ I+ +K +E I H +L GPPGTGKT
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH--------------LLFSGPPGTGKTA 53
Query: 62 LARAVA-----HHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP------SIIF 110
A A+A + FI ++ S+ G +VR AP IIF
Sbjct: 54 TAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFARTAPIGGAPFKIIF 107
Query: 111 MDEIDSIGSARMESGSGNGDSEVQRTM 137
+DE D++ + + + ++RTM
Sbjct: 108 LDEADAL--------TADAQAALRRTM 126
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 47 KGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQKYIGEGSRMV----RELFVM 100
+ VL+ G PGTGKT +A +A D F ++GSE+ + + + R + V
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
Query: 101 AREHAPSIIFMDEIDSIGS 119
+ A + + EID I S
Sbjct: 131 IKAGAVHTVSLHEIDVINS 149
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 108
VLL GPPG G+T LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 109 IFMDEIDSIGSA 120
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 47 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKYIGEGSRMV----RELFVM 100
+ VL+ G PGTGKT +A A D F ++GSE+ + + R + V
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVR 145
Query: 101 AREHAPSIIF---MDEIDSIGS 119
+E P ++ + EID I S
Sbjct: 146 IKEGPPGVVHTVSLHEIDVINS 167
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 39 ESLGIAQPKGVL---LYGPPGTGKTLLARAVA-------HHTDCTFIRVSGSELVQKYIG 88
+ LG+A L G PGTGKT +A +A + + V+ +LV +YIG
Sbjct: 50 QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 109
Query: 89 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 148
+ +E+ A ++F+DE + E G E+ ++E N D
Sbjct: 110 HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME--NNRD--- 161
Query: 149 ASNKIKVLMA--TNRIDILDQALLRPG---RIDRKIEFPNPNEESRLDI 192
+ V++A +R++ Q+ PG RI IEFP+ ++E +I
Sbjct: 162 ---DLVVILAGYADRMENFFQS--NPGFRSRIAHHIEFPDYSDEELFEI 205
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 32 IKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGSEL 82
+ H +++ + Q L+ GPPGTGKT+ + + +H C ++ +L
Sbjct: 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQL 416
Query: 83 VQKYIGEGSRMVRELFVMARE 103
+K G ++VR L +RE
Sbjct: 417 TEKIHQTGLKVVR-LCAKSRE 436
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREH 104
K ++ G G+GK+ LARA+A D F+ S + QK+ ++ V E+F RE+
Sbjct: 4 AKNIVFIGFXGSGKSTLARALAKDLDLVFLD-SDFLIEQKF----NQKVSEIFEQKREN 57
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 32 IKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGSEL 82
+ H +++ + Q L+ GPPGTGKT+ + + +H C ++ +L
Sbjct: 180 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQL 239
Query: 83 VQKYIGEGSRMVRELFVMARE 103
+K G ++VR L +RE
Sbjct: 240 TEKIHQTGLKVVR-LCAKSRE 259
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 24 IKEVIELPIKHPELFES--LGIAQPK-----GVLLYGPPGTGKTLLARAVAH 68
I +++EL P+ S LG A K + L+GP TGKT +A A+AH
Sbjct: 76 IYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 127
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 39 ESLGIAQPKGVL---LYGPPGTGKTLLARAVA-------HHTDCTFIRVSGSELVQKYIG 88
+ LG+A L G PGTGKT +A +A + + V+ +LV +YIG
Sbjct: 57 QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 116
Query: 89 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 148
+ +E+ A ++F+DE + E G E+ ++E N D
Sbjct: 117 HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME--NNRD--- 168
Query: 149 ASNKIKVLMA--TNRIDILDQALLRPG---RIDRKIEFPNPNEESRLDI 192
+ V++A +R++ Q+ PG RI IEFP+ ++E +I
Sbjct: 169 ---DLVVILAGYADRMENFFQS--NPGFRSRIAHHIEFPDYSDEELFEI 212
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 24 IKEVIELPIKHPELFES--LGIAQPK-----GVLLYGPPGTGKTLLARAVAH 68
I +++EL P+ S LG A K + L+GP TGKT +A A+AH
Sbjct: 75 IYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 32 IKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGSEL 82
+ H +++ + Q L+ GPPGTGKT+ + + +H C ++ +L
Sbjct: 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQL 240
Query: 83 VQKYIGEGSRMVRELFVMARE 103
+K G ++VR L +RE
Sbjct: 241 TEKIHQTGLKVVR-LCAKSRE 260
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 42 GIAQPKGV--LLYGPPGTGKTLLARAVAHHTD 71
+ QPKG+ L+ G PGTGKT +A +A D
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELD 35
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 22/89 (24%)
Query: 45 QPKGVLLY-GPPGTGKTLLARAVA---HHTDCTFIRVSGSELVQK------------YIG 88
+P G L+ GP G GKT LA+ +A T+ IR+ +E ++K Y+G
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG 645
Query: 89 --EGSRMVRELFVMAREHAPSIIFMDEID 115
EG ++ + R S+I DEI+
Sbjct: 646 YEEGGQLTEAV----RRRPYSVILFDEIE 670
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 26/168 (15%)
Query: 39 ESLGIAQPKGVL---LYGPPGTGKTLLARAVA-------HHTDCTFIRVSGSELVQKYIG 88
+ LG+A L G PGTGKT +A A + + V+ +LV +YIG
Sbjct: 57 QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 116
Query: 89 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 148
+ +E+ A ++F+DE + E G + +E+L Q+
Sbjct: 117 HTAPKTKEVLKRA---XGGVLFIDEAYYLYRPDNERDYG-------QEAIEILLQVXENN 166
Query: 149 ASNKIKVLMA-TNRIDILDQALLRPG---RIDRKIEFPNPNEESRLDI 192
+ + +L +R + Q+ PG RI IEFP+ ++E +I
Sbjct: 167 RDDLVVILAGYADRXENFFQS--NPGFRSRIAHHIEFPDYSDEELFEI 212
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARA 65
+PD D++ + +++ + EV L +L +P LLYG GTGKT +AR
Sbjct: 13 LPDYVPDVLPHREAELRRLAEV---------LAPALRGEKPSNALLYGLTGTGKTAVARL 63
Query: 66 V 66
V
Sbjct: 64 V 64
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLL 62
VEK T D + G ++ I +++ ++ K P L L YGPPGTGKT
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVD-EGKLPHL------------LFYGPPGTGKTST 62
Query: 63 ARAVA 67
A+A
Sbjct: 63 IVALA 67
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 40/207 (19%)
Query: 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELP--IKHPELFESLGIAQPKGV---------LL 51
++K S Y L Q+ +I + LP P F L +Q V L+
Sbjct: 322 IDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPN-FAQLNSSQSNAVSHVLQRPLSLI 380
Query: 52 YGPPGTGKTLLARAVAHHTD---------CTFIRVSGSELVQKYIGEGSRMVRELFVMAR 102
GPPGTGKT+ + + +H C V+ L K G ++VR L +R
Sbjct: 381 QGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVR-LTAKSR 439
Query: 103 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK---IKVLMAT 159
E S S+ + + + G G + +L+L +++ AS+ +K++ T
Sbjct: 440 EDVES--------SVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKT 491
Query: 160 -----NRIDILDQALLRPG--RIDRKI 179
N+ D++ + G R+D K
Sbjct: 492 EAEILNKADVVCCTCVGAGDKRLDTKF 518
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 47 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85
+ +LYGPPG GKT A VA + + S++ K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|3L4C|A Chain A, Structural Basis Of Membrane-Targeting By Dock180
pdb|3L4C|B Chain B, Structural Basis Of Membrane-Targeting By Dock180
Length = 220
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 15 GGLDQQIKEIKEVIELPIKHPELFESLGIAQP 46
G D+ I E K VI +K P FE++ +A P
Sbjct: 70 GAGDEAISEYKSVIYYQVKQPRWFETVKVAIP 101
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 36 ELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 68
+ E A+ KG+ LYG G GK+ L A+AH
Sbjct: 142 DFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 46 PKG----VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVREL--FV 99
P+G VLL GPPG GK +AV ++S EL ++ I EG+++ E ++
Sbjct: 16 PRGSHMRVLLLGPPGAGKG--TQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYL 73
Query: 100 MAREHAPSIIFMDEIDS 116
A + PS + + +D
Sbjct: 74 DAGDLVPSDLTNELVDD 90
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80
P + L GP GKT LA A+A C I V +
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis
Adenylate Kinase
Length = 181
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRM 93
VLL GPPG GK +AV ++S EL ++ I EG+++
Sbjct: 3 VLLLGPPGAGKG--TQAVKLAEKLGIPQISTGELFRRNIEEGTKL 45
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 65/164 (39%), Gaps = 46/164 (28%)
Query: 37 LFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE------- 89
L ++L A +L YGPPGTGKT A+ + G +L++ I E
Sbjct: 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKE-------LYGPDLMKSRILELNASDER 101
Query: 90 GSRMVREL---FVMAREHAPS-------------IIFMDEIDSIGSA-------RMESGS 126
G +VRE F PS II +DE DS+ + ME+ S
Sbjct: 102 GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS 161
Query: 127 GNGD-----SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165
G + V R + L +Q F + K L A+N ID L
Sbjct: 162 GVTRFCLICNYVTRIIDPLASQCSKF----RFKALDASNAIDRL 201
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 45 QPKGVLLYGPPGTGKTLLARAVA 67
Q + VLL G PGTGK++L +A+A
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMA 81
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 86
+ P LL G PG+GKT L A+ T I + Q++
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH 73
>pdb|2R44|A Chain A, Crystal Structure Of A Putative Atpase (Chu_0153) From
Cytophaga Hutchinsonii Atcc 33406 At 2.00 A Resolution
Length = 331
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 26/186 (13%)
Query: 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS------GSELVQKYI---GEGS 91
+GI +LL G PG KTL +A D F R+ S+L+ I +G+
Sbjct: 41 IGICTGGHILLEGVPGLAKTLSVNTLAKTXDLDFHRIQFTPDLLPSDLIGTXIYNQHKGN 100
Query: 92 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 151
V++ V + + I DE++ A+++S E Q T+ + LD N
Sbjct: 101 FEVKKGPVFS-----NFILADEVNR-SPAKVQSALLECXQEKQVTIGDTTYPLD-----N 149
Query: 152 KIKVLMATNRIDILDQALLRPGRIDR---KIEFPNPNEESRLDILKIHSRRMNLMRGIDL 208
VL N ++ L ++DR KI ++ES L++ + R N +
Sbjct: 150 PFLVLATQNPVEQEGTYPLPEAQVDRFXXKIHLTYLDKESELEVXR---RVSNXNFNYQV 206
Query: 209 KKIAEK 214
+KI K
Sbjct: 207 QKIVSK 212
>pdb|3TEN|A Chain A, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|B Chain B, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|C Chain C, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|D Chain D, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|E Chain E, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|F Chain F, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|G Chain G, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|H Chain H, Holo Form Of Carbon Disulfide Hydrolase
Length = 204
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 66 VAHHTDCTFIRVSGSELVQKYIGEG 90
V HTDC +R +G E+ + +I +G
Sbjct: 85 VVTHTDCGMLRFTGEEVAKYFISKG 109
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1
INITIATORS Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARA 65
+PD D + + QI++I ++ P+ E +P + +YG GTGKT + +
Sbjct: 14 LPDYIPDELPHREDQIRKIASILA-PLYREE--------KPNNIFIYGLTGTGKTAVVKF 64
Query: 66 V 66
V
Sbjct: 65 V 65
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 45 QPKGVLLY-GPPGTGKTLLARAVA---HHTDCTFIRVSGSELVQKY 86
+P G L+ GP G GKT LA+ +A T+ IR+ +E ++K+
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 87
>pdb|1ZZQ|A Chain A, Rat Nnos D597n Mutant With L-N(Omega)-Nitroarginine-(4r)-
Amino-L-Proline Amide Bound
pdb|1ZZQ|B Chain B, Rat Nnos D597n Mutant With L-N(Omega)-Nitroarginine-(4r)-
Amino-L-Proline Amide Bound
Length = 420
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 213 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 266
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 267 PAVSNMLLEIGGLEFSACPF 286
>pdb|2G6J|A Chain A, Structure Of Rat Nnos (l337n) Heme Domain
(4-aminobiopterin Bound) Complexed With No
pdb|2G6J|B Chain B, Structure Of Rat Nnos (l337n) Heme Domain
(4-aminobiopterin Bound) Complexed With No
Length = 420
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 213 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 266
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 267 PAVSNMLLEIGGLEFSACPF 286
>pdb|3JX0|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597n
Mutant Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JX0|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597n
Mutant Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JX1|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597n
Mutant Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JX1|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597n
Mutant Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3N62|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))
Bis(4-Methylpyridin-2-Amine)
pdb|3N62|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))
Bis(4-Methylpyridin-2-Amine)
pdb|3N64|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N64|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
Length = 422
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 215 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 268
Query: 55 PGTGKTLLARAVAHHTDCTFI-RVSGSELVQKYIGEGSRM 93
P LL + C F G+E+ + + SR
Sbjct: 269 PAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRNYCDNSRY 308
>pdb|1LZX|A Chain A, Rat Neuronal Nos Heme Domain With Ng-Hydroxy-L-Arginine
Bound
pdb|1LZX|B Chain B, Rat Neuronal Nos Heme Domain With Ng-Hydroxy-L-Arginine
Bound
pdb|1LZZ|A Chain A, Rat Neuronal Nos Heme Domain With
N-Isopropyl-N'-Hydroxyguanidine Bound
pdb|1LZZ|B Chain B, Rat Neuronal Nos Heme Domain With
N-Isopropyl-N'-Hydroxyguanidine Bound
pdb|1M00|A Chain A, Rat Neuronal Nos Heme Domain With
N-Butyl-N'-Hydroxyguanidine Bound
pdb|1M00|B Chain B, Rat Neuronal Nos Heme Domain With
N-Butyl-N'-Hydroxyguanidine Bound
pdb|1K2R|A Chain A, Structure Of Rat Brain Nnos Heme Domain Complexed With Ng-
Nitro-L-Arginine
pdb|1K2R|B Chain B, Structure Of Rat Brain Nnos Heme Domain Complexed With Ng-
Nitro-L-Arginine
pdb|1K2S|A Chain A, Structure Of Rat Brain Nnos Heme Domain Complexed With Ng-
Allyl-L-Arginine
pdb|1K2S|B Chain B, Structure Of Rat Brain Nnos Heme Domain Complexed With Ng-
Allyl-L-Arginine
pdb|1K2T|A Chain A, Structure Of Rat Brain Nnos Heme Domain Complexed With S-
Ethyl-N-Phenyl-Isothiourea
pdb|1K2T|B Chain B, Structure Of Rat Brain Nnos Heme Domain Complexed With S-
Ethyl-N-Phenyl-Isothiourea
pdb|1K2U|A Chain A, Structure Of Rat Brain Nnos Heme Domain Complexed With S-
Ethyl-N-[4-(Trifluoromethyl)phenyl] Isothiourea
pdb|1K2U|B Chain B, Structure Of Rat Brain Nnos Heme Domain Complexed With S-
Ethyl-N-[4-(Trifluoromethyl)phenyl] Isothiourea
pdb|1MMV|A Chain A, Rat Neuronal Nos Heme Domain With Ng-Propyl-L-Arginine
Bound
pdb|1MMV|B Chain B, Rat Neuronal Nos Heme Domain With Ng-Propyl-L-Arginine
Bound
pdb|1MMW|A Chain A, Rat Neuronal Nos Heme Domain With Vinyl-L-Nio Bound
pdb|1MMW|B Chain B, Rat Neuronal Nos Heme Domain With Vinyl-L-Nio Bound
Length = 419
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 213 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 266
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 267 PAVSNMLLEIGGLEFSACPF 286
>pdb|1ZZR|A Chain A, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-(4r)- Amino-L-Proline Amide
Bound
pdb|1ZZR|B Chain B, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-(4r)- Amino-L-Proline Amide
Bound
pdb|1ZZU|A Chain A, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-2,4- L-Diaminobutyric Amide
Bound
pdb|1ZZU|B Chain B, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-2,4- L-Diaminobutyric Amide
Bound
Length = 420
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 213 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 266
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 267 PAVSNMLLEIGGLEFSACPF 286
>pdb|3JX6|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336VY706
Heme Domain Complexed With N1-[(3' R,4'
R)-4'-((6"-Amino-4"
Methylpyridin-2"-Yl)methyl)pyrrolidin-3'-Yl]-N2-(3'-
Fluorop Ethane-1,2-Diamine Tetrahydrochloride
pdb|3JX6|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336VY706
Heme Domain Complexed With N1-[(3' R,4'
R)-4'-((6"-Amino-4"
Methylpyridin-2"-Yl)methyl)pyrrolidin-3'-Yl]-N2-(3'-
Fluorop Ethane-1,2-Diamine Tetrahydrochloride
pdb|3NLJ|A Chain A, Structure Of Neuronal Nitric Oxide Synthase
D597nM336VY706A TRIPLE Mutant Heme Domain Complexed With
6-{{(3'r,4'r)-3'-[2"-(3'''- Fluorophenethylamino)ethoxy]
Pyrrolidin-4'-Yl}methyl}-4- Methylpyridin-2-Amine
pdb|3NLJ|B Chain B, Structure Of Neuronal Nitric Oxide Synthase
D597nM336VY706A TRIPLE Mutant Heme Domain Complexed With
6-{{(3'r,4'r)-3'-[2"-(3'''- Fluorophenethylamino)ethoxy]
Pyrrolidin-4'-Yl}methyl}-4- Methylpyridin-2-Amine
Length = 422
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 215 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 268
Query: 55 PGTGKTLLARAVAHHTDCTFI-RVSGSELVQKYIGEGSRM 93
P LL + C F G+E+ + + SR
Sbjct: 269 PAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRNYCDNSRY 308
>pdb|3FC5|A Chain A, G586s Mutant Nnosoxy
pdb|3FC5|B Chain B, G586s Mutant Nnosoxy
Length = 422
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 215 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 268
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 269 PAVSNMLLEIGGLEFSACPF 288
>pdb|2G6H|A Chain A, Structure Of Rat Nnos Heme Domain (Bh4 Bound) In The
Reduced Form
pdb|2G6H|B Chain B, Structure Of Rat Nnos Heme Domain (Bh4 Bound) In The
Reduced Form
pdb|2G6I|A Chain A, Structure Of Rat Nnos Heme Domain (Bh2-Bound) In The
Reduced Form
pdb|2G6I|B Chain B, Structure Of Rat Nnos Heme Domain (Bh2-Bound) In The
Reduced Form
pdb|2G6K|A Chain A, Structure Of Rat Nnos Heme Domain (Bh4 Bound) Complexed
With No
pdb|2G6K|B Chain B, Structure Of Rat Nnos Heme Domain (Bh4 Bound) Complexed
With No
pdb|2G6L|A Chain A, Structure Of Rat Nnos Heme Domain (Bh2 Bound) Complexed
With No
pdb|2G6L|B Chain B, Structure Of Rat Nnos Heme Domain (Bh2 Bound) Complexed
With No
pdb|2G6M|A Chain A, Structure Of Rat Nnos Heme Domain (Bh4 Bound) Complexed
With Co
pdb|2G6M|B Chain B, Structure Of Rat Nnos Heme Domain (Bh4 Bound) Complexed
With Co
pdb|2G6N|A Chain A, Strcture Of Rat Nnos Heme Domain (Bh2 Bound) Complexed
With Co
pdb|2G6N|B Chain B, Strcture Of Rat Nnos Heme Domain (Bh2 Bound) Complexed
With Co
Length = 420
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 213 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 266
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 267 PAVSNMLLEIGGLEFSACPF 286
>pdb|1P6K|A Chain A, Rat Neuronal Nos D597n Mutant Heme Domain With L-N(Omega)-
Nitroarginine-2,4-L-Diaminobutyric Amide Bound
pdb|1P6K|B Chain B, Rat Neuronal Nos D597n Mutant Heme Domain With L-N(Omega)-
Nitroarginine-2,4-L-Diaminobutyric Amide Bound
Length = 421
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 215 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 268
Query: 55 PGTGKTLLARAVAHHTDCTFI-RVSGSELVQKYIGEGSRM 93
P LL + C F G+E+ + + SR
Sbjct: 269 PAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRNYCDNSRY 308
>pdb|1QW6|A Chain A, Rat Neuronal Nitric Oxide Synthase Oxygenase Domain In
Complex With N- Omega-Propyl-L-Arg.
pdb|1QWC|A Chain A, Rat Neuronal Nitric Oxide Synthase Oxygenase Domain In
Complex With W1400 Inhibitor.
pdb|1VAG|A Chain A, Neuronal Nitric Oxide Synthase Oxygenase Domain Complexed
With The Inhibitor Ar-R17477
pdb|1ZVI|A Chain A, Rat Neuronal Nitric Oxide Synthase Oxygenase Domain
pdb|1ZVL|A Chain A, Rat Neuronal Nitric Oxide Synthase Oxygenase Domain
Complexed With Natural Substrate L-arg.
pdb|1ZVL|B Chain B, Rat Neuronal Nitric Oxide Synthase Oxygenase Domain
Complexed With Natural Substrate L-arg
Length = 420
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 215 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 268
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 269 PAVSNMLLEIGGLEFSACPF 288
>pdb|1OM4|A Chain A, Structure Of Rat Neuronal Nos Heme Domain With L-arginine
Bound
pdb|1OM4|B Chain B, Structure Of Rat Neuronal Nos Heme Domain With L-arginine
Bound
pdb|2HX3|A Chain A, Rat Nnos Heme Domain Complexed With
(4s)-N-{4-Amino-5-[(2-Aminoethyl)-
Hydroxyamino]-Pentyl}-N'-Nitroguanidine
pdb|2HX3|B Chain B, Rat Nnos Heme Domain Complexed With
(4s)-N-{4-Amino-5-[(2-Aminoethyl)-
Hydroxyamino]-Pentyl}-N'-Nitroguanidine
pdb|2HX4|A Chain A, Rat Nnos Heme Domain Complexed With
4-N-(Nw-Nitro-L-Argininyl)-Trans-
4-Hydroxyamino-L-Proline Amide
pdb|2HX4|B Chain B, Rat Nnos Heme Domain Complexed With
4-N-(Nw-Nitro-L-Argininyl)-Trans-
4-Hydroxyamino-L-Proline Amide
pdb|3B3M|A Chain A, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-3-{cis-4'-[(6"-Aminopyridin-2"-Yl)
Methyl]pyrrolidin-3'-Ylamino}propan-1-Ol
pdb|3B3M|B Chain B, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-3-{cis-4'-[(6"-Aminopyridin-2"-Yl)
Methyl]pyrrolidin-3'-Ylamino}propan-1-Ol
pdb|3B3N|A Chain A, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-N1-{cis-4'-[(6"-Aminopyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}ethane-1,2-Diamine
pdb|3B3N|B Chain B, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-N1-{cis-4'-[(6"-Aminopyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}ethane-1,2-Diamine
pdb|3B3O|A Chain A, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-3'-Yl}-N2-(4'-Chlorobenzyl)ethane-
1,2- Diamine
pdb|3B3O|B Chain B, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-3'-Yl}-N2-(4'-Chlorobenzyl)ethane-
1,2- Diamine
pdb|3B3P|A Chain A, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-3'-Yl}-N2-(4'-Chlorobenzyl)ethane-
1,2- Diamine
pdb|3B3P|B Chain B, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-3'-Yl}-N2-(4'-Chlorobenzyl)ethane-
1,2- Diamine
pdb|3HSN|A Chain A, Ternary Structure Of Neuronal Nitric Oxide Synthase With
Nha And Co Bound
pdb|3HSN|B Chain B, Ternary Structure Of Neuronal Nitric Oxide Synthase With
Nha And Co Bound
pdb|3HSO|A Chain A, Ternary Structure Of Neuronal Nitric Oxide Synthase With
Nha And No Bound(1)
pdb|3HSO|B Chain B, Ternary Structure Of Neuronal Nitric Oxide Synthase With
Nha And No Bound(1)
pdb|3HSP|A Chain A, Ternary Structure Of Neuronal Nitric Oxide Synthase With
Nha And No Bound(2)
pdb|3HSP|B Chain B, Ternary Structure Of Neuronal Nitric Oxide Synthase With
Nha And No Bound(2)
pdb|3JT3|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Methylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT3|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Methylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT4|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[(3-(Ethylsulfanyl)propanimidoyl]-L-
Ornithine
pdb|3JT4|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[(3-(Ethylsulfanyl)propanimidoyl]-L-
Ornithine
pdb|3JT5|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Ethylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT5|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Ethylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT6|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[4-(Methylsulfanyl)butanimidoyl]-L-
Ornithine
pdb|3JT6|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[4-(Methylsulfanyl)butanimidoyl]-L-
Ornithine
pdb|3JT7|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Propylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT7|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Propylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT8|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-{3-[(1-Methylethyl)
Sulfanyl]propanimidoyl}-L-Ornithine
pdb|3JT8|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-{3-[(1-Methylethyl)
Sulfanyl]propanimidoyl}-L-Ornithine
pdb|3JT9|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
The Ferrous State Complexed With N~5~-[2-(Ethylsulfanyl)
Ethanimidoyl]-L-Ornithine
pdb|3JT9|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
The Ferrous State Complexed With N~5~-[2-(Ethylsulfanyl)
Ethanimidoyl]-L-Ornithine
pdb|3JTA|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
The Ferrous State Complexed With
N~5~-[4-(Methylsulfanyl) Butanimidoyl]-L-Ornithine
pdb|3JTA|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
The Ferrous State Complexed With
N~5~-[4-(Methylsulfanyl) Butanimidoyl]-L-Ornithine
pdb|3N2R|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3r,4r3S,
4S)-4-(3-Phenoxyphenoxy)pyrrolidin-3-Yl)methyl)
Pyridin-2-Amine
pdb|3N2R|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3r,4r3S,
4S)-4-(3-Phenoxyphenoxy)pyrrolidin-3-Yl)methyl)
Pyridin-2-Amine
pdb|3NNY|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain Complexed With
6-(((3r,
4r)-4-(2-(3-Fluorophenethylamino)ethoxy)pyrrolidin-3-
Yl)methyl)pyridin-2-Amine
pdb|3NNY|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain Complexed With
6-(((3r,
4r)-4-(2-(3-Fluorophenethylamino)ethoxy)pyrrolidin-3-
Yl)methyl)pyridin-2-Amine
pdb|3NNZ|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain Complexed With
6-(((3s,
4s)-4-(2-(3-Fluorophenethylamino)ethoxy)pyrrolidin-3-
Yl)methyl)pyridin-2-Amine
pdb|3NNZ|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain Complexed With
6-(((3s,
4s)-4-(2-(3-Fluorophenethylamino)ethoxy)pyrrolidin-3-
Yl)methyl)pyridin-2-Amine
pdb|3NLM|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-{{(3'r,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLM|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-{{(3'r,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLV|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3s,4s)-4-(2-(2,
2-Difluoro-2-(3-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLV|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3s,4s)-4-(2-(2,
2-Difluoro-2-(3-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLW|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3s,4s)-4-(2-(2,
2-Difluoro-2-(Piperidin-2-Yl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLW|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3s,4s)-4-(2-(2,
2-Difluoro-2-(Piperidin-2-Yl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLX|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With 6-(((3r,4r)-4-(2-
(2,2-Difluoro-2-(3-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLX|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With 6-(((3r,4r)-4-(2-
(2,2-Difluoro-2-(3-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLY|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With 6-(((3r,4r)-4-(2-
(2,2-Difluoro-2-(4-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLY|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With 6-(((3r,4r)-4-(2-
(2,2-Difluoro-2-(4-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLZ|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-(2,
2-Difluoro-2-Phenylethylamino)ethoxy)
Pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLZ|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-(2,
2-Difluoro-2-Phenylethylamino)ethoxy)
Pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NM0|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-(2,
2-Difluoro-2-Phenylethylamino)ethoxy)
Pyrrolidin-3-Yl)methyl)-4-Methyl-3,4,5,
6-Tetrahydropyridin-2-Amine
pdb|3NM0|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-(2,
2-Difluoro-2-Phenylethylamino)ethoxy)
Pyrrolidin-3-Yl)methyl)-4-Methyl-3,4,5,
6-Tetrahydropyridin-2-Amine
pdb|3N5V|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(3-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)phenethyl)-
6- Methylpyridin-2-Amine
pdb|3N5V|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(3-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)phenethyl)-
6- Methylpyridin-2-Amine
pdb|3N5W|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3N5W|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3N5X|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(2-(5-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-
3-Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N5X|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(2-(5-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-
3-Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N5Y|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(Pyridine-2,6-Diyl)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3N5Y|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(Pyridine-2,6-Diyl)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3N5Z|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(2-(6-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-
2-Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N5Z|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(2-(6-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-
2-Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N60|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3N60|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3Q99|A Chain A, Structure Of Neuronal Nitric Oxide Synthase In The Ferric
State In Complex With
N~5~-[(3-(Ethylsulfanyl)propanimidoyl]-L-Ornithine
pdb|3Q99|B Chain B, Structure Of Neuronal Nitric Oxide Synthase In The Ferric
State In Complex With
N~5~-[(3-(Ethylsulfanyl)propanimidoyl]-L-Ornithine
pdb|3Q9A|A Chain A, Structure Of Neuronal Nitric Oxide Synthase In The Ferric
State In Complex With
N-5-[2-(Ethylsulfanyl)ethanimidoyl]-L-Ornithine
pdb|3Q9A|B Chain B, Structure Of Neuronal Nitric Oxide Synthase In The Ferric
State In Complex With
N-5-[2-(Ethylsulfanyl)ethanimidoyl]-L-Ornithine
pdb|3SVP|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(3-Chloro-5-Fluorophenyl)
Ethyl)amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-
Methylpyridin-2-Amine
pdb|3SVP|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(3-Chloro-5-Fluorophenyl)
Ethyl)amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-
Methylpyridin-2-Amine
pdb|3SVQ|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2,2-Difluoro-2-(2,
3-Difluorophenyl)ethyl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
pdb|3SVQ|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2,2-Difluoro-2-(2,
3-Difluorophenyl)ethyl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
pdb|3PNG|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,
4r)-4-(2-((2-Fluoro-2-(3-Fluorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3PNG|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,
4r)-4-(2-((2-Fluoro-2-(3-Fluorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3PNE|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(3-Chlorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3PNE|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(3-Chlorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3PNF|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(2-Chlorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3PNF|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(2-Chlorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3TYL|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((2-Fluorobenzyl)amino)ethoxy)pyrrolidin-3-Yl)
Methyl)-4-Methylpyridin-2-Amine
pdb|3TYL|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((2-Fluorobenzyl)amino)ethoxy)pyrrolidin-3-Yl)
Methyl)-4-Methylpyridin-2-Amine
pdb|3TYM|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((2-Methoxybenzyl)amino)ethoxy)pyrrolidin-3-
Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3TYM|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((2-Methoxybenzyl)amino)ethoxy)pyrrolidin-3-
Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3TYN|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
2-(((2-(((3s,
4s)-4-((6-Amino-4-Methylpyridin-2-Yl)methyl)
Pyrrolidin-3-Yl)oxy)ethyl)amino)methyl)phenol
pdb|3TYN|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
2-(((2-(((3s,
4s)-4-((6-Amino-4-Methylpyridin-2-Yl)methyl)
Pyrrolidin-3-Yl)oxy)ethyl)amino)methyl)phenol
pdb|3TYO|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((Furan-2-Ylmethyl)amino)ethoxy)pyrrolidin-3-
Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3TYO|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((Furan-2-Ylmethyl)amino)ethoxy)pyrrolidin-3-
Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3RQJ|A Chain A, Structure Of The Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((1s,
2r)-2-(3-Fluorophenyl)cyclopropylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3RQJ|B Chain B, Structure Of The Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((1s,
2r)-2-(3-Fluorophenyl)cyclopropylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3RQK|A Chain A, Structure Of The Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
4-Methyl-6-{[(3r,4r)-4-(2-{[(1r,2s)-2-(3-Methylphenyl)
Cyclopropyl]amino}ethoxy)pyrrolidin-3-Yl]methyl}pyridin-
2-Amine And Its Isomer
pdb|3RQK|B Chain B, Structure Of The Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
4-Methyl-6-{[(3r,4r)-4-(2-{[(1r,2s)-2-(3-Methylphenyl)
Cyclopropyl]amino}ethoxy)pyrrolidin-3-Yl]methyl}pyridin-
2-Amine And Its Isomer
pdb|3RQL|A Chain A, Structure Of The Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((1s,2r1R,2S)-2-(3-Clorophenyl)
Cyclopropylamino)ethoxy)pyrrolidin-3-Yl)methyl)-4-
Methylpyridin-2- Amine
pdb|3RQL|B Chain B, Structure Of The Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((1s,2r1R,2S)-2-(3-Clorophenyl)
Cyclopropylamino)ethoxy)pyrrolidin-3-Yl)methyl)-4-
Methylpyridin-2- Amine
pdb|3RQM|A Chain A, Structure Of The Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-{[(3r,4r)-4-(2-{[(2r2S)-1-(3-Fluorophenyl)propan-2-
Yl]amino}ethoxy)pyrrolidin-3-Yl]methyl}-4-Methylpyridin-
2-Amine
pdb|3RQM|B Chain B, Structure Of The Neuronal Nitric Oxide Synthase Heme
Domain In Complex With
6-{[(3r,4r)-4-(2-{[(2r2S)-1-(3-Fluorophenyl)propan-2-
Yl]amino}ethoxy)pyrrolidin-3-Yl]methyl}-4-Methylpyridin-
2-Amine
pdb|3RQN|A Chain A, Structure Of The Neuronal Nitric Oxide Synthase Heme
Domain In Complex With 6-(((3R,4R)-4-(2-(((S
)-1-(3-Fluorophenyl)propan-2-Yl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
pdb|3RQN|B Chain B, Structure Of The Neuronal Nitric Oxide Synthase Heme
Domain In Complex With 6-(((3R,4R)-4-(2-(((S
)-1-(3-Fluorophenyl)propan-2-Yl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
pdb|3UFO|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3s,
4s)-4-((5-(3-Fluorophenyl)pentyl)oxy)pyrrolidin-3-
Yl)methyl)-4- Methylpyridin-2-Amine
pdb|3UFO|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3s,
4s)-4-((5-(3-Fluorophenyl)pentyl)oxy)pyrrolidin-3-
Yl)methyl)-4- Methylpyridin-2-Amine
pdb|3UFP|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(3-Fluorophenyl)pentyl)oxy)pyrrolidin-3-
Yl)methyl)-4- Methylpyridin-2-Amine
pdb|3UFP|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(3-Fluorophenyl)pentyl)oxy)pyrrolidin-3-
Yl)methyl)-4- Methylpyridin-2-Amine
pdb|3UFQ|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3s,
4s)-4-(((E)-5-(3-Fluorophenyl)pent-4-En-1-
Yl)oxy)pyrrolidin-3- Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3UFQ|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3s,
4s)-4-(((E)-5-(3-Fluorophenyl)pent-4-En-1-
Yl)oxy)pyrrolidin-3- Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3UFR|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-(((E)-5-(3-Fluorophenyl)pent-4-En-1-
Yl)oxy)pyrrolidin-3- Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3UFR|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-(((E)-5-(3-Fluorophenyl)pent-4-En-1-
Yl)oxy)pyrrolidin-3- Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3UFS|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(3-Chloro-5-
Fluorophenyl)pentyl)oxy)pyrrolidin-3-Yl)
Methyl)-4-Methylpyridin-2-Amine
pdb|3UFS|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(3-Chloro-5-
Fluorophenyl)pentyl)oxy)pyrrolidin-3-Yl)
Methyl)-4-Methylpyridin-2-Amine
pdb|3UFT|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-(4-(3-Chloro-5-Fluorophenoxy)butoxy)pyrrolidin-3-
Yl) Methyl)-4-Methylpyridin-2-Amine
pdb|3UFT|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-(4-(3-Chloro-5-Fluorophenoxy)butoxy)pyrrolidin-3-
Yl) Methyl)-4-Methylpyridin-2-Amine
pdb|3UFU|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 4-
Methyl-6-(((3r,
4r)-4-((5-(Pyridin-2-Yl)pentyl)oxy)pyrrolidin-3-Yl)
Methyl)pyridin-2-Amine
pdb|3UFU|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 4-
Methyl-6-(((3r,
4r)-4-((5-(Pyridin-2-Yl)pentyl)oxy)pyrrolidin-3-Yl)
Methyl)pyridin-2-Amine
pdb|3UFV|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 4-
Methyl-6-(((3r,
4r)-4-((5-(4-Methylpyridin-2-Yl)pentyl)oxy)pyrrolidin-
3-Yl)methyl)pyridin-2-Amine
pdb|3UFV|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 4-
Methyl-6-(((3r,
4r)-4-((5-(4-Methylpyridin-2-Yl)pentyl)oxy)pyrrolidin-
3-Yl)methyl)pyridin-2-Amine
pdb|3UFW|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(6-Aminopyridin-2-Yl)pentyl)oxy)pyrrolidin-3-
Yl) Methyl)-4-Methylpyridin-2-Amine
pdb|3UFW|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(6-Aminopyridin-2-Yl)pentyl)oxy)pyrrolidin-3-
Yl) Methyl)-4-Methylpyridin-2-Amine
pdb|4EUX|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(5-(((3r,4r)-4-((6-Amino-4-Methylpyridin-2-Yl)methyl)
Pyrrolidin-3-Yl)oxy)pentyl)-4-Methylpyridin-2-Amine
pdb|4EUX|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(5-(((3r,4r)-4-((6-Amino-4-Methylpyridin-2-Yl)methyl)
Pyrrolidin-3-Yl)oxy)pentyl)-4-Methylpyridin-2-Amine
Length = 422
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 215 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 268
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 269 PAVSNMLLEIGGLEFSACPF 288
>pdb|3DQR|A Chain A, Structure Of Neuronal Nos D597nM336V MUTANT HEME DOMAIN IN
Complex With A Inhibitor
(+-)-N1-{cis-4'-[(6"-Aminopyridin-
2"-Yl)methyl]pyrrolidin-3'-Yl}ethane-1,2-Diamine
pdb|3DQR|B Chain B, Structure Of Neuronal Nos D597nM336V MUTANT HEME DOMAIN IN
Complex With A Inhibitor
(+-)-N1-{cis-4'-[(6"-Aminopyridin-
2"-Yl)methyl]pyrrolidin-3'-Yl}ethane-1,2-Diamine
pdb|3JX2|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX2|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX3|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX3|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX4|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX4|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX5|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX5|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3NLP|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3's,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLP|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3's,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLQ|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4'r)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLQ|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4'r)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLR|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLR|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3N61|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N61|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N63|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-
2,1-Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N63|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-
2,1-Diyl))bis(4-Methylpyridin-2-Amine)
Length = 422
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 215 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 268
Query: 55 PGTGKTLLARAVAHHTDCTFI-RVSGSELVQKYIGEGSRM 93
P LL + C F G+E+ + + SR
Sbjct: 269 PAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRNYCDNSRY 308
>pdb|3N65|A Chain A, Structure Of Neuronal Nitric Oxide Synthase S602h Mutant
Heme Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))
Bis(4-Methylpyridin-2-Amine)
pdb|3N65|B Chain B, Structure Of Neuronal Nitric Oxide Synthase S602h Mutant
Heme Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))
Bis(4-Methylpyridin-2-Amine)
pdb|3N66|A Chain A, Structure Of Neuronal Nitric Oxide Synthase S602h Mutant
Heme Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N66|B Chain B, Structure Of Neuronal Nitric Oxide Synthase S602h Mutant
Heme Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
Length = 422
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 215 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 268
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 269 PAVSNMLLEIGGLEFSACPF 288
>pdb|1OM5|A Chain A, Structure Of Rat Neuronal Nos Heme Domain With 3-Bromo-7-
Nitroindazole Bound
pdb|1OM5|B Chain B, Structure Of Rat Neuronal Nos Heme Domain With 3-Bromo-7-
Nitroindazole Bound
pdb|1P6H|A Chain A, Rat Neuronal Nos Heme Domain With
L-N(Omega)-Nitroarginine- 2,4-L-Diaminobutyric Amide
Bound
pdb|1P6H|B Chain B, Rat Neuronal Nos Heme Domain With
L-N(Omega)-Nitroarginine- 2,4-L-Diaminobutyric Amide
Bound
pdb|1P6I|A Chain A, Rat Neuronal Nos Heme Domain With (4s)-N-(4-Amino-5-
[aminoethyl]aminopentyl)-N'-Nitroguanidine Bound
pdb|1P6I|B Chain B, Rat Neuronal Nos Heme Domain With (4s)-N-(4-Amino-5-
[aminoethyl]aminopentyl)-N'-Nitroguanidine Bound
pdb|1P6J|A Chain A, Rat Neuronal Nos Heme Domain With
L-N(Omega)-Nitroarginine- (4r)-Amino-L-Proline Amide
Bound
pdb|1P6J|B Chain B, Rat Neuronal Nos Heme Domain With
L-N(Omega)-Nitroarginine- (4r)-Amino-L-Proline Amide
Bound
pdb|1RS6|A Chain A, Rat Neuronal Nos Heme Domain With D-Lysine-D-Nitroarginine
Amide Bound
pdb|1RS6|B Chain B, Rat Neuronal Nos Heme Domain With D-Lysine-D-Nitroarginine
Amide Bound
pdb|1RS7|A Chain A, Rat Neuronal Nos Heme Domain With
D-Phenylalanine-D-Nitroarginine Amide Bound
pdb|1RS7|B Chain B, Rat Neuronal Nos Heme Domain With
D-Phenylalanine-D-Nitroarginine Amide Bound
Length = 421
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 215 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 268
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 269 PAVSNMLLEIGGLEFSACPF 288
>pdb|3JWS|A Chain A, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Hem Complexed With N1-[(3'
S,4's)-4'-((6"-Amino-4"-Methylpyridi
Methyl)pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)ethane-
1,2- Tetrahydrochloride
pdb|3JWS|B Chain B, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Hem Complexed With N1-[(3'
S,4's)-4'-((6"-Amino-4"-Methylpyridi
Methyl)pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)ethane-
1,2- Tetrahydrochloride
pdb|3JWT|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase R349a
Mutant Heme Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methylpyridin-
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethane-1,2- Diamine
pdb|3JWT|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase R349a
Mutant Heme Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methylpyridin-
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethane-1,2- Diamine
pdb|3JWU|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase R349a
Mutant Domain In Complex With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine Tetrahydrochloride
pdb|3JWU|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase R349a
Mutant Domain In Complex With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine Tetrahydrochloride
pdb|3JWV|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase R349a
Mutant Domain In Complex With
N1-{(3's,4'r)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JWV|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase R349a
Mutant Domain In Complex With
N1-{(3's,4'r)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3NLK|A Chain A, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3's,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLK|B Chain B, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3's,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLN|A Chain A, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3'r,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLN|B Chain B, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3'r,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLO|A Chain A, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3's,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLO|B Chain B, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3's,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
Length = 422
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 5 KVPDSTYDMI------GGLDQQIKEIKE--VIELPIKHP--ELFESLGIAQPKGVLLYGP 54
K P +D++ G D ++ +I V+E+PI+HP + F+ LG+ YG
Sbjct: 215 KAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK------WYGL 268
Query: 55 PGTGKTLLARAVAHHTDCTF 74
P LL + C F
Sbjct: 269 PAVSNMLLEIGGLEFSACPF 288
>pdb|3TEO|A Chain A, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|B Chain B, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|C Chain C, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|D Chain D, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|E Chain E, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|F Chain F, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|G Chain G, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|H Chain H, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|I Chain I, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|J Chain J, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|K Chain K, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|L Chain L, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|M Chain M, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|N Chain N, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|O Chain O, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|P Chain P, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
Length = 204
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 66 VAHHTDCTFIRVSGSELVQKYIGEG 90
V HTDC +R +G E+ + +I +G
Sbjct: 85 VVTHTDCGXLRFTGEEVAKYFISKG 109
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 17/80 (21%)
Query: 49 VLLYGPPGTGKTLLARAVA-----HHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMARE 103
+L GPPG GKT A A+A + F+ ++ S+ G ++RE
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD------ERGINVIREKVKEFAR 102
Query: 104 HAP------SIIFMDEIDSI 117
P IIF+DE D++
Sbjct: 103 TKPIGGASFKIIFLDEADAL 122
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77
+LL G PG GKT L + +A + +I V
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 45 QPKGVLLY-GPPGTGKTLLARAVA---HHTDCTFIRVSGSELVQKY 86
+P G L+ GP G GKT LA+ +A T+ IR+ +E +K+
Sbjct: 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAXIRIDXTEYXEKH 90
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRV 77
+LL G PG GKT L + +A + +I V
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 140 LLNQLDGFEASNKIKVLMATNRIDILDQA----LLRPGR--IDRKIEFPNPNEESRLDIL 193
L L+ F+ +N++ + + +I + A L PGR ID++I+F N +EE I
Sbjct: 386 LYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIH 445
Query: 194 KIHSR 198
+H R
Sbjct: 446 DLHRR 450
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 22 KEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI------ 75
KEI+ VIE+ L +L G PG GKT +A +A +
Sbjct: 187 KEIQRVIEV----------LSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236
Query: 76 -RVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMD 112
RV ++ KY GE ++++ R+ I+F+D
Sbjct: 237 KRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID 274
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 191 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL-----RERRIHVTQE 245
++L + SR+MNL + + L K EK G + A EA + A+ E+ + ++
Sbjct: 104 EVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQ 163
Query: 246 DFEMAVAKVMKKE 258
+FE + K+MK E
Sbjct: 164 EFEFYIEKIMKGE 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,665,463
Number of Sequences: 62578
Number of extensions: 309945
Number of successful extensions: 1228
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 150
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)