Query 024249
Match_columns 270
No_of_seqs 253 out of 2495
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.6E-66 3.5E-71 439.9 28.0 260 1-261 140-399 (406)
2 KOG0728 26S proteasome regulat 100.0 3.9E-63 8.4E-68 401.3 23.8 269 1-270 136-404 (404)
3 KOG0730 AAA+-type ATPase [Post 100.0 6.5E-56 1.4E-60 399.8 25.1 261 5-269 427-689 (693)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 2.4E-54 5.1E-59 385.5 26.2 256 5-264 504-779 (802)
5 KOG0726 26S proteasome regulat 100.0 4.7E-53 1E-57 348.9 18.1 257 1-258 174-430 (440)
6 KOG0652 26S proteasome regulat 100.0 9.5E-52 2.1E-56 336.8 21.0 256 1-257 160-415 (424)
7 KOG0727 26S proteasome regulat 100.0 2.2E-51 4.8E-56 333.3 22.7 254 4-258 147-400 (408)
8 KOG0736 Peroxisome assembly fa 100.0 1.8E-50 4E-55 368.4 25.8 260 5-267 665-945 (953)
9 KOG0729 26S proteasome regulat 100.0 1.3E-50 2.7E-55 331.2 20.8 255 1-256 166-420 (435)
10 PTZ00454 26S protease regulato 100.0 3E-49 6.6E-54 352.4 28.8 257 1-258 134-390 (398)
11 KOG0738 AAA+-type ATPase [Post 100.0 2.3E-49 4.9E-54 337.9 22.0 258 6-269 206-484 (491)
12 KOG0734 AAA+-type ATPase conta 100.0 2.4E-48 5.3E-53 342.5 21.9 244 8-256 300-543 (752)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 3.7E-48 7.9E-53 345.9 21.7 225 8-237 186-414 (802)
14 PTZ00361 26 proteosome regulat 100.0 1.4E-47 3E-52 343.8 25.1 256 1-257 172-427 (438)
15 PRK03992 proteasome-activating 100.0 1E-46 2.3E-51 337.4 28.1 259 2-261 121-379 (389)
16 KOG0731 AAA+-type ATPase conta 100.0 1.3E-45 2.7E-50 342.0 25.8 252 6-258 305-557 (774)
17 TIGR01243 CDC48 AAA family ATP 100.0 1.8E-44 3.9E-49 346.8 27.6 263 5-270 446-726 (733)
18 KOG0739 AAA+-type ATPase [Post 100.0 1.3E-45 2.9E-50 305.5 16.3 260 3-269 124-431 (439)
19 TIGR01242 26Sp45 26S proteasom 100.0 6.6E-44 1.4E-48 317.8 27.9 252 2-254 112-363 (364)
20 COG1223 Predicted ATPase (AAA+ 100.0 4E-44 8.6E-49 291.7 20.2 246 4-258 113-359 (368)
21 TIGR01241 FtsH_fam ATP-depende 100.0 1.5E-42 3.2E-47 320.3 26.7 253 2-256 45-297 (495)
22 COG0464 SpoVK ATPases of the A 100.0 1.3E-42 2.9E-47 321.2 26.1 251 5-259 235-488 (494)
23 KOG0735 AAA+-type ATPase [Post 100.0 1.2E-42 2.5E-47 315.0 24.3 226 8-237 663-888 (952)
24 COG0465 HflB ATP-dependent Zn 100.0 5.5E-43 1.2E-47 319.3 22.4 250 6-257 144-393 (596)
25 CHL00195 ycf46 Ycf46; Provisio 100.0 3.3E-42 7.1E-47 313.4 26.2 254 7-269 223-480 (489)
26 KOG0651 26S proteasome regulat 100.0 7.3E-43 1.6E-47 290.5 14.8 250 4-254 124-373 (388)
27 KOG0737 AAA+-type ATPase [Post 100.0 6.5E-42 1.4E-46 291.6 20.5 244 8-257 88-362 (386)
28 CHL00176 ftsH cell division pr 100.0 1E-40 2.2E-45 312.3 25.9 248 7-256 178-425 (638)
29 TIGR03689 pup_AAA proteasome A 100.0 2.6E-39 5.7E-44 294.1 25.2 251 3-256 173-480 (512)
30 PRK10733 hflB ATP-dependent me 100.0 9.8E-38 2.1E-42 294.8 26.5 248 8-257 148-395 (644)
31 KOG0730 AAA+-type ATPase [Post 100.0 6.8E-38 1.5E-42 283.3 21.1 240 7-258 180-420 (693)
32 TIGR01243 CDC48 AAA family ATP 100.0 1.5E-36 3.2E-41 292.1 26.6 249 5-257 171-438 (733)
33 KOG0740 AAA+-type ATPase [Post 100.0 6.6E-37 1.4E-41 269.4 17.0 259 4-269 145-419 (428)
34 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.9E-36 8.5E-41 296.5 24.0 215 33-257 1617-1880(2281)
35 KOG0732 AAA+-type ATPase conta 100.0 6.6E-36 1.4E-40 284.1 18.6 250 8-261 261-532 (1080)
36 KOG0741 AAA+-type ATPase [Post 100.0 2.6E-35 5.6E-40 260.1 14.7 257 7-265 214-501 (744)
37 PLN00020 ribulose bisphosphate 100.0 4.4E-32 9.4E-37 233.9 20.3 215 9-231 112-348 (413)
38 KOG0735 AAA+-type ATPase [Post 99.9 2.1E-24 4.5E-29 196.9 18.9 232 12-256 408-650 (952)
39 KOG0743 AAA+-type ATPase [Post 99.9 8.3E-24 1.8E-28 185.6 17.5 211 6-226 195-412 (457)
40 KOG0744 AAA+-type ATPase [Post 99.9 9.9E-24 2.1E-28 177.3 12.4 247 10-260 140-420 (423)
41 KOG0742 AAA+-type ATPase [Post 99.9 1.1E-22 2.3E-27 175.8 17.9 234 10-256 353-614 (630)
42 CHL00181 cbbX CbbX; Provisiona 99.9 5.5E-22 1.2E-26 170.7 21.6 212 12-237 23-257 (287)
43 KOG0736 Peroxisome assembly fa 99.9 1.5E-22 3.3E-27 186.2 18.5 208 45-259 430-658 (953)
44 PF00004 AAA: ATPase family as 99.9 1.5E-22 3.2E-27 154.6 14.2 130 49-183 1-132 (132)
45 TIGR02880 cbbX_cfxQ probable R 99.9 7.1E-22 1.5E-26 170.1 19.6 212 12-237 22-256 (284)
46 TIGR02881 spore_V_K stage V sp 99.9 1.3E-21 2.8E-26 166.9 19.2 212 11-237 5-241 (261)
47 TIGR02639 ClpA ATP-dependent C 99.8 1.2E-19 2.6E-24 174.8 19.6 224 6-255 176-430 (731)
48 COG0464 SpoVK ATPases of the A 99.8 5.9E-19 1.3E-23 163.6 21.6 222 30-257 2-229 (494)
49 PF05496 RuvB_N: Holliday junc 99.8 2E-19 4.3E-24 146.3 15.9 197 4-231 16-226 (233)
50 PRK00080 ruvB Holliday junctio 99.8 1.2E-18 2.6E-23 153.4 20.8 220 4-254 17-250 (328)
51 PRK04195 replication factor C 99.8 1.2E-18 2.7E-23 160.7 20.3 211 1-250 3-221 (482)
52 TIGR00635 ruvB Holliday juncti 99.8 2.7E-18 5.9E-23 149.8 19.7 214 10-254 2-229 (305)
53 TIGR00763 lon ATP-dependent pr 99.8 1.4E-18 3E-23 168.4 19.4 167 12-197 320-505 (775)
54 PRK11034 clpA ATP-dependent Cl 99.8 1.8E-18 3.9E-23 165.4 17.9 222 9-256 183-435 (758)
55 TIGR02928 orc1/cdc6 family rep 99.8 4.1E-17 8.8E-22 145.8 23.6 225 8-256 11-276 (365)
56 PHA02544 44 clamp loader, smal 99.8 3.5E-17 7.6E-22 143.5 19.8 162 1-196 10-172 (316)
57 COG2255 RuvB Holliday junction 99.8 2.9E-17 6.2E-22 136.6 18.0 219 5-254 19-251 (332)
58 PRK14956 DNA polymerase III su 99.8 2.5E-17 5.4E-22 148.7 18.9 205 2-249 8-241 (484)
59 PRK12402 replication factor C 99.8 9.2E-17 2E-21 141.9 22.2 214 1-253 4-248 (337)
60 TIGR02902 spore_lonB ATP-depen 99.8 1.4E-17 3.1E-22 154.7 17.2 221 2-252 55-330 (531)
61 PRK12323 DNA polymerase III su 99.8 1.8E-17 4E-22 153.3 17.3 191 3-232 7-231 (700)
62 PRK14961 DNA polymerase III su 99.8 4.1E-17 8.9E-22 145.4 19.1 207 3-252 7-242 (363)
63 PRK00411 cdc6 cell division co 99.8 1.5E-16 3.2E-21 143.7 22.6 226 8-256 26-284 (394)
64 PRK14962 DNA polymerase III su 99.8 3E-17 6.5E-22 149.9 18.2 207 3-252 5-240 (472)
65 PRK07003 DNA polymerase III su 99.8 8.2E-17 1.8E-21 150.9 21.2 191 3-232 7-226 (830)
66 PLN03025 replication factor C 99.8 1.2E-16 2.6E-21 140.2 21.0 204 1-249 2-218 (319)
67 PRK00149 dnaA chromosomal repl 99.8 1.1E-16 2.4E-21 146.6 20.6 192 47-256 149-351 (450)
68 PRK13342 recombination factor 99.8 1.1E-16 2.4E-21 145.1 20.2 205 2-254 2-219 (413)
69 TIGR00362 DnaA chromosomal rep 99.8 2.2E-16 4.8E-21 142.9 21.9 221 7-256 105-339 (405)
70 PRK06645 DNA polymerase III su 99.7 1.8E-16 3.9E-21 145.5 19.3 217 2-252 11-254 (507)
71 PRK14960 DNA polymerase III su 99.7 2.4E-16 5.1E-21 146.3 19.8 204 3-249 6-238 (702)
72 TIGR03345 VI_ClpV1 type VI sec 99.7 3.2E-16 6.9E-21 152.5 21.0 219 6-251 181-428 (852)
73 PRK07994 DNA polymerase III su 99.7 3.6E-16 7.9E-21 146.5 20.4 205 3-250 7-240 (647)
74 COG0466 Lon ATP-dependent Lon 99.7 1.5E-17 3.3E-22 153.1 10.8 167 12-197 323-508 (782)
75 PRK14086 dnaA chromosomal repl 99.7 7.5E-16 1.6E-20 142.7 21.5 201 47-264 315-525 (617)
76 PRK14088 dnaA chromosomal repl 99.7 6.6E-16 1.4E-20 140.6 20.8 195 47-256 131-334 (440)
77 KOG2004 Mitochondrial ATP-depe 99.7 1.7E-17 3.6E-22 152.3 10.2 168 12-198 411-597 (906)
78 PRK14958 DNA polymerase III su 99.7 2.2E-16 4.8E-21 145.6 17.6 207 2-251 6-241 (509)
79 COG2256 MGS1 ATPase related to 99.7 4E-16 8.7E-21 135.5 17.9 206 5-255 17-239 (436)
80 PRK14949 DNA polymerase III su 99.7 9.5E-16 2.1E-20 146.2 22.1 190 3-231 7-225 (944)
81 PRK14951 DNA polymerase III su 99.7 4E-16 8.7E-21 145.9 18.7 206 2-250 6-245 (618)
82 PRK06893 DNA replication initi 99.7 8.6E-16 1.9E-20 128.5 18.7 215 1-251 5-227 (229)
83 PRK08691 DNA polymerase III su 99.7 5.1E-16 1.1E-20 145.2 19.0 207 3-252 7-242 (709)
84 PRK14963 DNA polymerase III su 99.7 7E-16 1.5E-20 142.1 19.6 204 4-251 6-237 (504)
85 PRK10865 protein disaggregatio 99.7 2E-16 4.3E-21 154.3 16.7 170 5-201 171-358 (857)
86 COG1474 CDC6 Cdc6-related prot 99.7 2E-15 4.3E-20 133.8 21.2 223 8-256 13-267 (366)
87 KOG0989 Replication factor C, 99.7 6.8E-16 1.5E-20 129.6 16.5 194 2-232 26-236 (346)
88 PRK14964 DNA polymerase III su 99.7 8E-16 1.7E-20 140.3 18.3 205 4-251 5-238 (491)
89 PRK00440 rfc replication facto 99.7 1.3E-15 2.9E-20 133.4 19.0 207 1-252 6-224 (319)
90 PTZ00112 origin recognition co 99.7 1.4E-15 3.1E-20 143.6 19.5 221 9-256 752-1008(1164)
91 PRK14959 DNA polymerase III su 99.7 1.2E-15 2.6E-20 141.9 18.8 206 2-250 6-240 (624)
92 TIGR02397 dnaX_nterm DNA polym 99.7 6.8E-16 1.5E-20 137.4 16.6 208 1-251 3-239 (355)
93 CHL00095 clpC Clp protease ATP 99.7 7.1E-16 1.5E-20 150.4 18.0 200 8-234 175-401 (821)
94 PRK05896 DNA polymerase III su 99.7 1.9E-15 4.1E-20 140.0 19.5 206 2-250 6-240 (605)
95 TIGR03346 chaperone_ClpB ATP-d 99.7 5.5E-16 1.2E-20 151.7 16.8 201 5-232 166-394 (852)
96 TIGR03420 DnaA_homol_Hda DnaA 99.7 4E-15 8.8E-20 124.1 19.5 208 5-251 8-225 (226)
97 PRK14969 DNA polymerase III su 99.7 1.2E-15 2.5E-20 141.7 17.0 206 3-251 7-241 (527)
98 PRK12422 chromosomal replicati 99.7 8.9E-15 1.9E-19 133.1 22.3 193 47-257 142-346 (445)
99 PRK14952 DNA polymerase III su 99.7 4.3E-15 9.3E-20 138.5 20.7 206 3-250 4-240 (584)
100 PRK07764 DNA polymerase III su 99.7 2.3E-15 4.9E-20 145.3 19.3 190 3-231 6-226 (824)
101 PRK14957 DNA polymerase III su 99.7 4.1E-15 8.9E-20 137.4 20.2 205 3-250 7-240 (546)
102 PRK08727 hypothetical protein; 99.7 9.1E-15 2E-19 122.6 20.6 211 2-253 9-230 (233)
103 PRK10787 DNA-binding ATP-depen 99.7 1.1E-15 2.3E-20 147.5 16.1 221 12-252 322-580 (784)
104 PRK08084 DNA replication initi 99.7 1.2E-14 2.7E-19 121.9 20.6 212 2-251 12-233 (235)
105 PRK13341 recombination factor 99.7 4.3E-15 9.4E-20 141.7 19.3 209 2-253 18-246 (725)
106 PRK07133 DNA polymerase III su 99.7 5.9E-15 1.3E-19 139.3 19.9 212 2-250 8-239 (725)
107 COG1116 TauB ABC-type nitrate/ 99.7 3.8E-16 8.3E-21 128.5 9.7 133 40-186 23-222 (248)
108 PRK14970 DNA polymerase III su 99.7 4.6E-15 1E-19 132.7 17.5 207 3-252 8-231 (367)
109 PRK14953 DNA polymerase III su 99.7 7.1E-15 1.5E-19 135.0 18.9 213 2-251 6-241 (486)
110 PRK05563 DNA polymerase III su 99.7 7.4E-15 1.6E-19 137.3 19.3 203 4-249 8-239 (559)
111 PRK07940 DNA polymerase III su 99.7 3.6E-15 7.9E-20 133.4 15.9 183 10-224 3-212 (394)
112 PRK08903 DnaA regulatory inact 99.7 4E-14 8.6E-19 118.4 20.9 206 2-252 8-224 (227)
113 COG1126 GlnQ ABC-type polar am 99.6 8E-16 1.7E-20 123.6 9.8 113 41-168 23-202 (240)
114 PRK14087 dnaA chromosomal repl 99.6 2.6E-14 5.6E-19 130.4 20.8 190 47-255 142-349 (450)
115 PRK08451 DNA polymerase III su 99.6 2.1E-14 4.5E-19 132.2 20.2 204 2-248 4-236 (535)
116 PRK14955 DNA polymerase III su 99.6 8.2E-15 1.8E-19 132.1 16.3 209 4-251 8-254 (397)
117 PRK09111 DNA polymerase III su 99.6 3.7E-14 8E-19 132.9 20.7 213 3-252 15-255 (598)
118 PF05673 DUF815: Protein of un 99.6 5.9E-14 1.3E-18 115.9 19.4 197 3-229 18-244 (249)
119 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 1.5E-15 3.3E-20 126.4 9.9 128 40-182 24-219 (254)
120 PRK06305 DNA polymerase III su 99.6 3.3E-14 7.2E-19 129.7 19.1 205 4-251 9-243 (451)
121 PRK14965 DNA polymerase III su 99.6 3.7E-14 7.9E-19 133.1 19.6 205 3-250 7-240 (576)
122 PRK06647 DNA polymerase III su 99.6 5.3E-14 1.2E-18 131.2 20.4 204 4-250 8-240 (563)
123 COG1136 SalX ABC-type antimicr 99.6 2.3E-15 5E-20 123.6 9.6 113 40-166 25-207 (226)
124 KOG1969 DNA replication checkp 99.6 3.1E-14 6.8E-19 131.4 17.8 218 1-237 260-518 (877)
125 COG2884 FtsE Predicted ATPase 99.6 3.2E-15 6.9E-20 117.7 9.1 114 40-168 22-203 (223)
126 PRK14954 DNA polymerase III su 99.6 5.9E-14 1.3E-18 131.7 19.1 215 4-251 8-254 (620)
127 COG1120 FepC ABC-type cobalami 99.6 4.4E-15 9.6E-20 124.2 10.0 140 40-196 22-235 (258)
128 PRK14950 DNA polymerase III su 99.6 6.9E-14 1.5E-18 131.8 19.1 205 3-250 7-241 (585)
129 TIGR02903 spore_lon_C ATP-depe 99.6 1.8E-13 3.9E-18 129.3 21.5 220 5-254 147-430 (615)
130 PF00308 Bac_DnaA: Bacterial d 99.6 1.2E-13 2.7E-18 114.6 17.3 198 7-233 3-215 (219)
131 PRK05642 DNA replication initi 99.6 4.2E-13 9.1E-18 112.6 20.7 214 2-251 9-232 (234)
132 PRK14948 DNA polymerase III su 99.6 3.1E-13 6.8E-18 127.4 19.9 189 3-230 7-226 (620)
133 TIGR02640 gas_vesic_GvpN gas v 99.6 5.4E-13 1.2E-17 113.9 19.0 190 45-257 20-260 (262)
134 cd03216 ABC_Carb_Monos_I This 99.5 2.3E-14 4.9E-19 113.7 8.4 113 40-167 20-147 (163)
135 PRK06620 hypothetical protein; 99.5 1.1E-12 2.4E-17 108.5 18.6 200 2-251 6-213 (214)
136 COG2812 DnaX DNA polymerase II 99.5 1.1E-13 2.3E-18 126.2 13.3 198 4-234 8-228 (515)
137 PRK05342 clpX ATP-dependent pr 99.5 6.6E-13 1.4E-17 119.5 18.0 233 13-248 72-399 (412)
138 cd00009 AAA The AAA+ (ATPases 99.5 4.3E-13 9.3E-18 103.2 14.6 140 16-182 2-150 (151)
139 PRK14971 DNA polymerase III su 99.5 8.6E-13 1.9E-17 124.4 19.0 193 2-233 7-229 (614)
140 KOG2028 ATPase related to the 99.5 2.8E-13 6.1E-18 116.4 14.1 212 4-254 130-368 (554)
141 COG3842 PotA ABC-type spermidi 99.5 2.4E-14 5.1E-19 125.0 7.6 112 40-165 25-200 (352)
142 COG1124 DppF ABC-type dipeptid 99.5 3.8E-14 8.2E-19 116.0 8.1 118 40-171 27-211 (252)
143 COG1127 Ttg2A ABC-type transpo 99.5 8.3E-14 1.8E-18 113.7 9.9 114 41-168 29-212 (263)
144 PRK09087 hypothetical protein; 99.5 1.4E-12 3E-17 108.8 17.6 174 46-254 44-222 (226)
145 COG1125 OpuBA ABC-type proline 99.5 5.3E-14 1.2E-18 115.7 8.2 112 40-165 21-199 (309)
146 PRK13407 bchI magnesium chelat 99.5 6.5E-13 1.4E-17 116.3 15.2 223 6-256 2-308 (334)
147 COG1118 CysA ABC-type sulfate/ 99.5 6.1E-14 1.3E-18 118.2 8.3 114 40-167 22-203 (345)
148 TIGR00390 hslU ATP-dependent p 99.5 1.5E-12 3.2E-17 115.6 17.0 71 12-82 12-83 (441)
149 TIGR02030 BchI-ChlI magnesium 99.5 1.5E-12 3.3E-17 114.2 17.0 223 10-259 2-314 (337)
150 TIGR00602 rad24 checkpoint pro 99.5 7.6E-13 1.6E-17 124.3 15.8 175 1-199 73-289 (637)
151 CHL00081 chlI Mg-protoporyphyr 99.5 4E-12 8.7E-17 111.6 19.3 225 7-258 12-326 (350)
152 COG1117 PstB ABC-type phosphat 99.5 1.9E-13 4.2E-18 109.7 9.8 63 89-167 151-213 (253)
153 COG4555 NatA ABC-type Na+ tran 99.5 1.6E-13 3.4E-18 109.2 9.1 114 40-168 22-199 (245)
154 COG1131 CcmA ABC-type multidru 99.5 1.1E-13 2.3E-18 119.9 8.9 115 40-168 25-203 (293)
155 TIGR00382 clpX endopeptidase C 99.5 1.9E-12 4.2E-17 116.0 17.0 223 12-237 77-387 (413)
156 COG0593 DnaA ATPase involved i 99.5 3.6E-12 7.9E-17 113.2 18.2 194 46-259 113-318 (408)
157 KOG0991 Replication factor C, 99.5 3.9E-13 8.6E-18 109.1 10.9 137 2-171 17-162 (333)
158 COG4619 ABC-type uncharacteriz 99.5 2.6E-13 5.7E-18 105.0 9.3 111 40-164 23-196 (223)
159 PRK05201 hslU ATP-dependent pr 99.5 1.4E-12 3E-17 115.8 15.2 72 12-83 15-87 (443)
160 COG3839 MalK ABC-type sugar tr 99.5 9.4E-14 2E-18 120.6 7.6 112 40-165 23-197 (338)
161 COG1122 CbiO ABC-type cobalt t 99.5 8.8E-14 1.9E-18 116.0 7.0 115 40-168 24-205 (235)
162 PRK13537 nodulation ABC transp 99.5 1.7E-13 3.7E-18 119.5 9.0 113 40-167 27-203 (306)
163 cd03222 ABC_RNaseL_inhibitor T 99.5 2.2E-13 4.7E-18 109.2 8.7 113 41-167 20-137 (177)
164 PRK11034 clpA ATP-dependent Cl 99.5 1.8E-12 3.8E-17 124.5 16.3 204 12-235 458-716 (758)
165 TIGR00960 3a0501s02 Type II (G 99.5 3.6E-13 7.9E-18 111.7 9.9 113 40-167 23-203 (216)
166 TIGR01188 drrA daunorubicin re 99.5 2.2E-13 4.7E-18 118.7 8.9 113 40-167 13-189 (302)
167 cd03246 ABCC_Protease_Secretio 99.5 3.2E-13 7E-18 108.2 9.2 111 40-165 22-159 (173)
168 COG3638 ABC-type phosphate/pho 99.5 5.9E-13 1.3E-17 108.5 10.6 141 40-194 24-241 (258)
169 TIGR03015 pepcterm_ATPase puta 99.5 1.1E-11 2.4E-16 106.1 19.0 191 46-254 43-266 (269)
170 cd03226 ABC_cobalt_CbiO_domain 99.5 3.6E-13 7.8E-18 110.8 9.4 113 40-167 20-191 (205)
171 cd03269 ABC_putative_ATPase Th 99.4 5.1E-13 1.1E-17 110.3 9.9 113 40-167 20-193 (210)
172 PRK13539 cytochrome c biogenes 99.4 7.2E-13 1.6E-17 109.2 10.7 113 40-167 22-192 (207)
173 TIGR02639 ClpA ATP-dependent C 99.4 4.1E-12 8.8E-17 122.9 17.6 202 12-235 454-712 (731)
174 cd03214 ABC_Iron-Siderophores_ 99.4 3E-13 6.5E-18 109.1 8.2 114 40-167 19-163 (180)
175 cd03228 ABCC_MRP_Like The MRP 99.4 6.9E-13 1.5E-17 106.0 10.2 111 40-166 22-159 (171)
176 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 4.5E-13 9.8E-18 111.3 9.4 113 40-166 24-205 (218)
177 cd03230 ABC_DR_subfamily_A Thi 99.4 3.9E-13 8.4E-18 107.7 8.7 113 40-167 20-160 (173)
178 PRK13536 nodulation factor exp 99.4 3.2E-13 6.9E-18 119.2 8.7 114 40-168 61-238 (340)
179 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 3.2E-13 6.9E-18 104.9 7.7 110 40-167 20-132 (144)
180 cd03247 ABCC_cytochrome_bd The 99.4 8.7E-13 1.9E-17 106.2 10.2 111 40-166 22-161 (178)
181 cd03229 ABC_Class3 This class 99.4 4.2E-13 9.2E-18 108.0 8.3 114 40-167 20-166 (178)
182 PRK13538 cytochrome c biogenes 99.4 8.5E-13 1.8E-17 108.5 9.9 113 40-167 21-194 (204)
183 TIGR01650 PD_CobS cobaltochela 99.4 1.9E-12 4E-17 112.1 12.4 174 44-232 62-282 (327)
184 cd03293 ABC_NrtD_SsuB_transpor 99.4 4.4E-13 9.4E-18 111.6 8.3 114 40-167 24-197 (220)
185 cd03218 ABC_YhbG The ABC trans 99.4 5.6E-13 1.2E-17 111.8 9.0 113 40-167 20-198 (232)
186 PRK13541 cytochrome c biogenes 99.4 1.5E-12 3.2E-17 106.3 11.2 114 40-168 20-189 (195)
187 cd03259 ABC_Carb_Solutes_like 99.4 5E-13 1.1E-17 110.6 8.5 114 40-167 20-196 (213)
188 PRK09112 DNA polymerase III su 99.4 1.3E-11 2.7E-16 109.2 17.8 189 6-228 17-242 (351)
189 TIGR01166 cbiO cobalt transpor 99.4 1.1E-12 2.3E-17 106.7 10.1 110 40-164 12-189 (190)
190 TIGR02673 FtsE cell division A 99.4 7.6E-13 1.6E-17 109.6 9.3 113 40-167 22-202 (214)
191 cd03301 ABC_MalK_N The N-termi 99.4 4.9E-13 1.1E-17 110.6 8.1 114 40-167 20-196 (213)
192 cd03292 ABC_FtsE_transporter F 99.4 8.4E-13 1.8E-17 109.3 9.5 113 40-167 21-201 (214)
193 COG1135 AbcC ABC-type metal io 99.4 4.9E-13 1.1E-17 113.0 8.0 141 40-194 26-243 (339)
194 cd03266 ABC_NatA_sodium_export 99.4 6.8E-13 1.5E-17 110.2 8.9 113 40-167 25-201 (218)
195 cd03215 ABC_Carb_Monos_II This 99.4 5.8E-13 1.2E-17 107.6 8.2 113 40-167 20-169 (182)
196 COG3840 ThiQ ABC-type thiamine 99.4 5.4E-13 1.2E-17 104.5 7.6 115 40-168 19-196 (231)
197 cd03232 ABC_PDR_domain2 The pl 99.4 1.6E-12 3.4E-17 106.0 10.7 109 40-163 27-169 (192)
198 cd03217 ABC_FeS_Assembly ABC-t 99.4 6.5E-13 1.4E-17 108.9 8.5 112 40-166 20-168 (200)
199 PRK11650 ugpC glycerol-3-phosp 99.4 4.8E-13 1E-17 118.8 8.1 114 40-167 24-200 (356)
200 PRK13540 cytochrome c biogenes 99.4 1.5E-12 3.2E-17 106.8 10.4 113 40-167 21-192 (200)
201 TIGR02314 ABC_MetN D-methionin 99.4 5.6E-13 1.2E-17 117.6 8.3 114 40-167 25-206 (343)
202 cd03268 ABC_BcrA_bacitracin_re 99.4 9.6E-13 2.1E-17 108.5 9.2 113 40-167 20-191 (208)
203 cd03265 ABC_DrrA DrrA is the A 99.4 7.9E-13 1.7E-17 110.0 8.7 114 40-167 20-197 (220)
204 TIGR02211 LolD_lipo_ex lipopro 99.4 1.1E-12 2.4E-17 109.1 9.5 113 40-166 25-206 (221)
205 cd03225 ABC_cobalt_CbiO_domain 99.4 7.7E-13 1.7E-17 109.3 8.4 113 40-167 21-199 (211)
206 PRK07471 DNA polymerase III su 99.4 6.8E-11 1.5E-15 105.2 21.2 159 6-196 13-212 (365)
207 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 1.3E-12 2.8E-17 109.9 9.7 113 40-166 21-197 (236)
208 cd03213 ABCG_EPDR ABCG transpo 99.4 2.1E-12 4.7E-17 105.3 10.7 112 40-166 29-176 (194)
209 COG4586 ABC-type uncharacteriz 99.4 1.5E-12 3.3E-17 108.1 9.8 117 40-170 44-225 (325)
210 TIGR01288 nodI ATP-binding ABC 99.4 8E-13 1.7E-17 115.2 8.6 113 40-167 24-200 (303)
211 PRK13543 cytochrome c biogenes 99.4 1.6E-12 3.4E-17 107.8 9.8 115 40-169 31-204 (214)
212 cd03262 ABC_HisP_GlnQ_permease 99.4 1E-12 2.2E-17 108.7 8.7 113 40-167 20-200 (213)
213 cd03263 ABC_subfamily_A The AB 99.4 1.3E-12 2.8E-17 108.7 9.2 112 40-167 22-197 (220)
214 cd03258 ABC_MetN_methionine_tr 99.4 1.1E-12 2.4E-17 110.1 8.8 114 40-167 25-206 (233)
215 TIGR01186 proV glycine betaine 99.4 1E-12 2.2E-17 116.7 8.8 114 40-167 13-195 (363)
216 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.4 1.3E-12 2.8E-17 109.0 9.0 112 41-167 43-207 (224)
217 PRK11432 fbpC ferric transport 99.4 7.4E-13 1.6E-17 117.3 7.9 113 40-166 26-201 (351)
218 PRK11629 lolD lipoprotein tran 99.4 1.2E-12 2.5E-17 109.9 8.7 114 40-167 29-211 (233)
219 PRK11248 tauB taurine transpor 99.4 9.4E-13 2E-17 112.0 8.2 114 40-167 21-194 (255)
220 cd00267 ABC_ATPase ABC (ATP-bi 99.4 1.4E-12 3E-17 102.8 8.6 114 40-168 19-146 (157)
221 PRK10908 cell division protein 99.4 1.8E-12 3.9E-17 108.0 9.7 113 40-167 22-202 (222)
222 cd03261 ABC_Org_Solvent_Resist 99.4 1.2E-12 2.5E-17 110.1 8.6 114 40-167 20-202 (235)
223 TIGR03265 PhnT2 putative 2-ami 99.4 8.1E-13 1.8E-17 117.2 7.9 114 40-167 24-200 (353)
224 cd03235 ABC_Metallic_Cations A 99.4 2.3E-12 4.9E-17 106.7 10.1 113 40-167 19-197 (213)
225 TIGR03522 GldA_ABC_ATP gliding 99.4 1.5E-12 3.2E-17 113.4 9.4 113 40-168 22-198 (301)
226 COG2607 Predicted ATPase (AAA+ 99.4 1E-10 2.3E-15 95.5 19.2 197 3-230 51-277 (287)
227 PRK11153 metN DL-methionine tr 99.4 1.1E-12 2.4E-17 116.2 8.5 114 40-167 25-206 (343)
228 TIGR03410 urea_trans_UrtE urea 99.4 1.4E-12 3E-17 109.2 8.7 114 40-167 20-197 (230)
229 cd03231 ABC_CcmA_heme_exporter 99.4 2.6E-12 5.7E-17 105.4 10.1 114 40-168 20-191 (201)
230 cd03224 ABC_TM1139_LivF_branch 99.4 1.2E-12 2.7E-17 108.9 8.2 113 40-167 20-197 (222)
231 PRK11247 ssuB aliphatic sulfon 99.4 1.9E-12 4.2E-17 110.1 9.5 114 40-167 32-199 (257)
232 PRK09536 btuD corrinoid ABC tr 99.4 1.1E-12 2.4E-17 117.9 8.4 114 40-168 23-205 (402)
233 TIGR03608 L_ocin_972_ABC putat 99.4 3.1E-12 6.8E-17 105.3 10.4 110 40-164 18-196 (206)
234 PRK09452 potA putrescine/sperm 99.4 1.1E-12 2.3E-17 117.2 8.0 114 40-167 34-210 (375)
235 TIGR01184 ntrCD nitrate transp 99.4 1.4E-12 3.1E-17 109.2 8.2 114 40-167 5-180 (230)
236 PRK11000 maltose/maltodextrin 99.4 1E-12 2.2E-17 117.4 7.6 114 40-167 23-199 (369)
237 COG4181 Predicted ABC-type tra 99.4 3.7E-12 8E-17 99.0 9.6 111 41-165 31-210 (228)
238 cd03238 ABC_UvrA The excision 99.4 2.6E-12 5.6E-17 102.9 9.1 111 40-165 15-152 (176)
239 TIGR03740 galliderm_ABC gallid 99.4 2E-12 4.4E-17 107.8 8.9 113 40-167 20-189 (223)
240 cd03298 ABC_ThiQ_thiamine_tran 99.4 1.7E-12 3.6E-17 107.4 8.2 114 40-167 18-194 (211)
241 TIGR03258 PhnT 2-aminoethylpho 99.4 1.3E-12 2.7E-17 116.3 7.9 114 40-167 25-204 (362)
242 cd03267 ABC_NatA_like Similar 99.4 2.5E-12 5.4E-17 108.2 9.2 114 40-167 41-219 (236)
243 PRK13531 regulatory ATPase Rav 99.4 9.2E-11 2E-15 106.2 19.8 213 13-257 21-286 (498)
244 TIGR01189 ccmA heme ABC export 99.4 4.9E-12 1.1E-16 103.5 10.6 112 40-166 20-191 (198)
245 TIGR02442 Cob-chelat-sub cobal 99.4 2.2E-11 4.8E-16 115.8 16.6 220 10-258 2-308 (633)
246 cd03294 ABC_Pro_Gly_Bertaine T 99.4 2E-12 4.3E-17 110.9 8.5 114 40-167 44-226 (269)
247 cd03264 ABC_drug_resistance_li 99.4 2.9E-12 6.3E-17 105.9 9.2 111 40-167 20-194 (211)
248 PRK09493 glnQ glutamine ABC tr 99.4 2.3E-12 4.9E-17 108.6 8.7 113 40-167 21-201 (240)
249 PRK11607 potG putrescine trans 99.4 1.4E-12 2.9E-17 116.7 7.7 114 40-167 39-215 (377)
250 COG4152 ABC-type uncharacteriz 99.4 2.7E-12 5.8E-17 105.1 8.7 114 40-168 22-196 (300)
251 COG4525 TauB ABC-type taurine 99.4 1.8E-12 3.9E-17 102.8 7.3 111 40-164 25-195 (259)
252 PRK13647 cbiO cobalt transport 99.4 2.1E-12 4.5E-17 111.0 8.4 112 41-167 26-203 (274)
253 PRK13652 cbiO cobalt transport 99.4 2.2E-12 4.8E-17 111.0 8.4 115 40-168 24-204 (277)
254 PRK11264 putative amino-acid A 99.4 3.3E-12 7.1E-17 108.3 9.3 58 95-167 152-209 (250)
255 COG2274 SunT ABC-type bacterio 99.4 3.6E-12 7.7E-17 121.5 10.6 111 41-167 494-673 (709)
256 PRK11614 livF leucine/isoleuci 99.4 2E-12 4.4E-17 108.7 8.0 113 40-167 25-202 (237)
257 PRK10895 lipopolysaccharide AB 99.4 3.3E-12 7.1E-17 107.8 9.1 113 40-167 23-202 (241)
258 PRK14250 phosphate ABC transpo 99.4 3.2E-12 6.9E-17 107.8 9.0 114 40-167 23-197 (241)
259 PRK13638 cbiO cobalt transport 99.4 2.3E-12 5E-17 110.6 8.3 113 40-167 21-201 (271)
260 TIGR00764 lon_rel lon-related 99.4 6.1E-11 1.3E-15 112.0 18.4 103 152-256 268-393 (608)
261 COG4608 AppF ABC-type oligopep 99.4 2.5E-12 5.4E-17 107.4 8.0 114 40-167 33-175 (268)
262 TIGR02315 ABC_phnC phosphonate 99.3 5.1E-12 1.1E-16 106.7 10.0 59 95-167 153-211 (243)
263 PRK11124 artP arginine transpo 99.3 4.4E-12 9.4E-17 107.1 9.6 113 40-167 22-206 (242)
264 PRK10771 thiQ thiamine transpo 99.3 3E-12 6.5E-17 107.4 8.4 114 40-167 19-195 (232)
265 PRK11831 putative ABC transpor 99.3 3E-12 6.4E-17 109.8 8.6 114 40-167 27-209 (269)
266 smart00382 AAA ATPases associa 99.3 1.5E-11 3.2E-16 93.7 11.6 123 46-184 2-147 (148)
267 PRK13650 cbiO cobalt transport 99.3 2.7E-12 5.9E-17 110.6 8.3 112 40-165 27-204 (279)
268 PRK11144 modC molybdate transp 99.3 2.6E-12 5.7E-17 114.1 8.4 114 40-167 18-194 (352)
269 PRK13643 cbiO cobalt transport 99.3 3.5E-12 7.6E-17 110.4 8.9 113 40-167 26-209 (288)
270 PRK10865 protein disaggregatio 99.3 1E-10 2.2E-15 114.6 20.1 203 11-235 567-829 (857)
271 cd03296 ABC_CysA_sulfate_impor 99.3 3.1E-12 6.7E-17 107.8 8.2 114 40-167 22-202 (239)
272 PRK05564 DNA polymerase III su 99.3 8.1E-11 1.7E-15 103.1 17.4 169 10-217 2-182 (313)
273 PRK10584 putative ABC transpor 99.3 4.6E-12 1E-16 105.9 9.2 112 40-165 30-210 (228)
274 COG4618 ArpD ABC-type protease 99.3 4.9E-12 1.1E-16 113.1 9.7 112 40-166 356-536 (580)
275 PRK11231 fecE iron-dicitrate t 99.3 4.9E-12 1.1E-16 107.6 9.4 113 40-167 22-203 (255)
276 TIGR01277 thiQ thiamine ABC tr 99.3 3.5E-12 7.5E-17 105.6 8.2 114 40-167 18-194 (213)
277 cd03256 ABC_PhnC_transporter A 99.3 5.5E-12 1.2E-16 106.3 9.5 114 40-167 21-210 (241)
278 PRK13635 cbiO cobalt transport 99.3 3.7E-12 8.1E-17 109.7 8.6 113 40-166 27-205 (279)
279 PRK10070 glycine betaine trans 99.3 2.8E-12 6.1E-17 115.2 8.0 114 40-167 48-230 (400)
280 PRK13646 cbiO cobalt transport 99.3 4.1E-12 8.8E-17 109.9 8.8 115 40-168 27-212 (286)
281 cd03223 ABCD_peroxisomal_ALDP 99.3 9.7E-12 2.1E-16 98.9 10.3 106 40-163 21-149 (166)
282 PRK13644 cbiO cobalt transport 99.3 3.8E-12 8.2E-17 109.4 8.4 112 40-166 22-200 (274)
283 PRK10247 putative ABC transpor 99.3 5.3E-12 1.1E-16 105.4 9.0 113 40-166 27-202 (225)
284 PRK13546 teichoic acids export 99.3 4.5E-12 9.7E-17 108.3 8.7 113 40-167 44-208 (264)
285 PRK09544 znuC high-affinity zi 99.3 3.3E-12 7.1E-17 108.4 7.7 115 40-168 24-187 (251)
286 PRK10851 sulfate/thiosulfate t 99.3 3.3E-12 7.1E-17 113.4 7.9 114 40-167 22-202 (353)
287 PRK10575 iron-hydroxamate tran 99.3 5.6E-12 1.2E-16 107.8 9.2 114 40-167 31-213 (265)
288 TIGR02142 modC_ABC molybdenum 99.3 4.3E-12 9.2E-17 112.9 8.7 114 40-167 17-197 (354)
289 PRK10619 histidine/lysine/argi 99.3 5.8E-12 1.3E-16 107.3 9.2 58 95-167 160-217 (257)
290 PRK13548 hmuV hemin importer A 99.3 4.7E-12 1E-16 107.9 8.6 114 40-167 22-206 (258)
291 PRK13648 cbiO cobalt transport 99.3 6.6E-12 1.4E-16 107.6 9.5 113 40-166 29-207 (269)
292 cd03300 ABC_PotA_N PotA is an 99.3 4.7E-12 1E-16 106.2 8.4 113 41-167 21-196 (232)
293 TIGR03005 ectoine_ehuA ectoine 99.3 5.7E-12 1.2E-16 107.0 9.0 59 95-167 154-212 (252)
294 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 9.2E-12 2E-16 104.8 10.1 111 40-166 23-202 (238)
295 COG0714 MoxR-like ATPases [Gen 99.3 2E-10 4.2E-15 101.4 18.9 133 45-195 42-201 (329)
296 cd03297 ABC_ModC_molybdenum_tr 99.3 5.9E-12 1.3E-16 104.3 8.7 113 40-167 18-197 (214)
297 PRK15056 manganese/iron transp 99.3 7.7E-12 1.7E-16 107.4 9.7 113 40-167 27-207 (272)
298 cd03253 ABCC_ATM1_transporter 99.3 9.3E-12 2E-16 104.6 9.9 111 40-166 21-200 (236)
299 TIGR03771 anch_rpt_ABC anchore 99.3 1.2E-11 2.6E-16 103.1 10.5 111 42-167 2-178 (223)
300 PRK13632 cbiO cobalt transport 99.3 7.4E-12 1.6E-16 107.5 9.4 113 40-166 29-207 (271)
301 PRK13641 cbiO cobalt transport 99.3 6.5E-12 1.4E-16 108.7 8.9 59 94-167 152-210 (287)
302 cd03219 ABC_Mj1267_LivG_branch 99.3 5.7E-12 1.2E-16 105.9 8.4 58 95-167 151-208 (236)
303 PRK13637 cbiO cobalt transport 99.3 4.8E-12 1E-16 109.5 8.0 114 40-167 27-210 (287)
304 cd03252 ABCC_Hemolysin The ABC 99.3 1.1E-11 2.4E-16 104.2 10.0 111 40-166 22-201 (237)
305 cd03237 ABC_RNaseL_inhibitor_d 99.3 6.3E-12 1.4E-16 106.3 8.5 112 42-167 21-181 (246)
306 cd03251 ABCC_MsbA MsbA is an e 99.3 1.2E-11 2.7E-16 103.7 10.2 111 40-166 22-201 (234)
307 cd03254 ABCC_Glucan_exporter_l 99.3 1.2E-11 2.7E-16 103.4 10.1 110 41-166 24-202 (229)
308 PRK13639 cbiO cobalt transport 99.3 7.7E-12 1.7E-16 107.6 9.1 113 40-167 22-202 (275)
309 PRK13651 cobalt transporter AT 99.3 6.7E-12 1.5E-16 109.3 8.8 61 93-168 171-231 (305)
310 cd03295 ABC_OpuCA_Osmoprotecti 99.3 5.6E-12 1.2E-16 106.4 8.0 114 40-167 21-201 (242)
311 TIGR01978 sufC FeS assembly AT 99.3 7.7E-12 1.7E-16 105.6 8.7 58 95-167 152-209 (243)
312 cd03257 ABC_NikE_OppD_transpor 99.3 8.1E-12 1.8E-16 104.4 8.8 58 96-167 154-211 (228)
313 PRK13634 cbiO cobalt transport 99.3 7.6E-12 1.6E-16 108.4 8.8 114 40-167 27-211 (290)
314 PRK13636 cbiO cobalt transport 99.3 7.4E-12 1.6E-16 108.1 8.7 114 40-167 26-207 (283)
315 PRK13649 cbiO cobalt transport 99.3 6.5E-12 1.4E-16 108.3 8.4 58 95-167 153-210 (280)
316 PRK15112 antimicrobial peptide 99.3 6.8E-12 1.5E-16 107.4 8.4 114 40-167 33-215 (267)
317 PRK10253 iron-enterobactin tra 99.3 8.4E-12 1.8E-16 106.8 9.0 115 40-168 27-210 (265)
318 cd03233 ABC_PDR_domain1 The pl 99.3 9.4E-12 2E-16 102.2 8.8 113 40-166 27-184 (202)
319 TIGR03873 F420-0_ABC_ATP propo 99.3 8.4E-12 1.8E-16 106.2 8.8 113 40-167 21-202 (256)
320 TIGR02868 CydC thiol reductant 99.3 1.6E-11 3.5E-16 115.1 11.4 106 41-162 356-529 (529)
321 PRK11022 dppD dipeptide transp 99.3 7.2E-12 1.6E-16 110.2 8.4 114 40-167 27-219 (326)
322 cd03299 ABC_ModC_like Archeal 99.3 8.6E-12 1.9E-16 104.8 8.5 114 40-167 19-195 (235)
323 PRK14247 phosphate ABC transpo 99.3 1.2E-11 2.6E-16 104.9 9.4 112 40-167 23-210 (250)
324 cd03245 ABCC_bacteriocin_expor 99.3 1.9E-11 4E-16 101.7 10.4 110 40-165 24-202 (220)
325 cd03260 ABC_PstB_phosphate_tra 99.3 1.6E-11 3.4E-16 102.7 10.0 112 40-167 20-205 (227)
326 PRK13645 cbiO cobalt transport 99.3 6.8E-12 1.5E-16 108.7 7.9 59 95-167 158-216 (289)
327 COG1119 ModF ABC-type molybden 99.3 2.2E-11 4.9E-16 100.0 10.3 67 92-171 176-242 (257)
328 PRK13631 cbiO cobalt transport 99.3 8.4E-12 1.8E-16 109.4 8.4 60 93-167 182-241 (320)
329 PRK13633 cobalt transporter AT 99.3 1.1E-11 2.5E-16 106.8 9.0 113 40-166 30-209 (280)
330 cd03369 ABCC_NFT1 Domain 2 of 99.3 2.2E-11 4.7E-16 100.4 10.2 110 41-166 29-188 (207)
331 TIGR02769 nickel_nikE nickel i 99.3 1.2E-11 2.6E-16 105.8 9.0 59 95-167 158-216 (265)
332 TIGR03345 VI_ClpV1 type VI sec 99.3 2.5E-10 5.4E-15 111.7 19.1 199 12-235 566-831 (852)
333 PRK13640 cbiO cobalt transport 99.3 1.1E-11 2.3E-16 107.1 8.6 112 40-165 27-207 (282)
334 COG0542 clpA ATP-binding subun 99.3 2E-10 4.4E-15 108.9 17.8 201 8-234 166-393 (786)
335 TIGR00678 holB DNA polymerase 99.3 8.9E-11 1.9E-15 95.3 13.4 143 45-217 13-183 (188)
336 TIGR03411 urea_trans_UrtD urea 99.3 1.2E-11 2.6E-16 104.4 8.6 112 40-167 22-207 (242)
337 cd03244 ABCC_MRP_domain2 Domai 99.3 2.3E-11 4.9E-16 101.2 10.1 111 40-166 24-202 (221)
338 TIGR00968 3a0106s01 sulfate AB 99.3 1E-11 2.2E-16 104.5 8.1 114 40-167 20-196 (237)
339 TIGR02770 nickel_nikD nickel i 99.3 1.5E-11 3.3E-16 103.0 9.1 114 40-167 6-191 (230)
340 PF03215 Rad17: Rad17 cell cyc 99.3 1.2E-10 2.7E-15 107.5 15.8 69 1-77 8-76 (519)
341 PRK15177 Vi polysaccharide exp 99.3 2.5E-11 5.4E-16 100.5 10.1 112 40-167 7-168 (213)
342 PRK14242 phosphate transporter 99.3 1.7E-11 3.6E-16 104.2 9.2 112 40-167 26-213 (253)
343 PRK15439 autoinducer 2 ABC tra 99.3 8.3E-12 1.8E-16 116.4 8.0 113 40-167 31-205 (510)
344 PRK11308 dppF dipeptide transp 99.3 1E-11 2.2E-16 109.2 8.1 114 40-167 35-220 (327)
345 cd03234 ABCG_White The White s 99.3 2E-11 4.3E-16 102.0 9.5 113 40-167 27-209 (226)
346 cd03250 ABCC_MRP_domain1 Domai 99.3 2.8E-11 6.1E-16 99.5 10.2 113 40-167 25-193 (204)
347 cd03248 ABCC_TAP TAP, the Tran 99.3 3.3E-11 7.1E-16 100.7 10.6 110 41-166 35-213 (226)
348 PRK09580 sufC cysteine desulfu 99.3 1.8E-11 3.8E-16 103.7 9.1 113 40-167 21-210 (248)
349 PRK11176 lipid transporter ATP 99.3 2.5E-11 5.5E-16 115.0 11.2 111 40-166 363-543 (582)
350 PRK03695 vitamin B12-transport 99.3 1.3E-11 2.8E-16 104.6 8.3 113 40-167 16-198 (248)
351 TIGR03346 chaperone_ClpB ATP-d 99.3 2.2E-10 4.7E-15 112.6 17.9 203 12-236 565-827 (852)
352 PHA02244 ATPase-like protein 99.3 4.8E-10 1E-14 98.4 18.1 127 45-187 118-264 (383)
353 PRK15079 oligopeptide ABC tran 99.3 1.1E-11 2.3E-16 109.2 7.9 114 40-167 41-227 (331)
354 TIGR03415 ABC_choXWV_ATP choli 99.3 1.4E-11 3E-16 110.0 8.6 113 41-167 45-230 (382)
355 PRK10762 D-ribose transporter 99.3 1.3E-11 2.9E-16 114.8 8.7 113 40-167 24-206 (501)
356 PRK13642 cbiO cobalt transport 99.3 1.6E-11 3.5E-16 105.7 8.5 113 40-166 27-205 (277)
357 COG1123 ATPase components of v 99.3 1.2E-11 2.7E-16 112.8 8.1 114 40-167 311-495 (539)
358 PRK14269 phosphate ABC transpo 99.3 2.2E-11 4.8E-16 103.0 9.2 112 40-167 22-206 (246)
359 TIGR02323 CP_lyasePhnK phospho 99.3 2.2E-11 4.8E-16 103.4 9.2 59 95-167 156-214 (253)
360 PRK10790 putative multidrug tr 99.3 2.8E-11 6.2E-16 114.9 10.9 110 41-166 362-539 (592)
361 PRK14273 phosphate ABC transpo 99.3 2.4E-11 5.3E-16 103.3 9.4 112 40-167 27-214 (254)
362 TIGR02324 CP_lyasePhnL phospho 99.3 3.3E-11 7E-16 100.5 9.9 113 40-167 28-214 (224)
363 PRK11701 phnK phosphonate C-P 99.3 2.2E-11 4.9E-16 103.7 8.9 59 95-167 159-217 (258)
364 PRK09473 oppD oligopeptide tra 99.3 1.7E-11 3.7E-16 107.9 8.3 114 40-167 36-227 (330)
365 PRK14248 phosphate ABC transpo 99.3 2.3E-11 5E-16 104.2 9.0 112 40-167 41-228 (268)
366 KOG2035 Replication factor C, 99.3 4E-10 8.8E-15 93.9 15.8 217 1-256 2-260 (351)
367 PRK13547 hmuV hemin importer A 99.3 2E-11 4.4E-16 104.7 8.6 50 104-167 171-220 (272)
368 PRK11174 cysteine/glutathione 99.3 2.9E-11 6.4E-16 114.7 10.5 111 40-166 370-548 (588)
369 PRK14259 phosphate ABC transpo 99.3 2.7E-11 5.9E-16 103.8 9.3 112 40-167 33-218 (269)
370 PRK10419 nikE nickel transport 99.3 1.9E-11 4.1E-16 104.8 8.3 114 40-167 32-217 (268)
371 PRK14253 phosphate ABC transpo 99.3 2.8E-11 6.1E-16 102.6 9.3 112 40-167 23-209 (249)
372 COG0410 LivF ABC-type branched 99.3 5.1E-11 1.1E-15 97.1 10.3 111 40-164 23-199 (237)
373 PRK10418 nikD nickel transport 99.3 2.2E-11 4.7E-16 103.6 8.6 114 40-167 23-206 (254)
374 TIGR03796 NHPM_micro_ABC1 NHPM 99.3 3.6E-11 7.8E-16 116.5 11.1 108 41-166 500-676 (710)
375 PRK14256 phosphate ABC transpo 99.3 2.4E-11 5.1E-16 103.2 8.7 113 40-168 24-213 (252)
376 PRK13545 tagH teichoic acids e 99.2 2.1E-11 4.5E-16 111.7 8.8 113 40-167 44-208 (549)
377 TIGR02982 heterocyst_DevA ABC 99.2 4.5E-11 9.7E-16 99.5 10.0 110 40-163 25-203 (220)
378 COG1134 TagH ABC-type polysacc 99.2 5.8E-11 1.3E-15 97.6 10.4 117 40-171 47-216 (249)
379 PRK13549 xylose transporter AT 99.2 1.5E-11 3.2E-16 114.6 7.9 113 40-167 25-208 (506)
380 PRK14274 phosphate ABC transpo 99.2 3.1E-11 6.8E-16 102.9 9.3 112 40-167 32-219 (259)
381 PRK14262 phosphate ABC transpo 99.2 3.7E-11 8E-16 101.9 9.5 112 40-167 23-210 (250)
382 PRK11300 livG leucine/isoleuci 99.2 2.3E-11 4.9E-16 103.5 8.2 59 95-167 161-219 (255)
383 PRK10938 putative molybdenum t 99.2 2.6E-11 5.5E-16 112.6 9.2 113 40-167 23-200 (490)
384 PRK14240 phosphate transporter 99.2 3.2E-11 7E-16 102.2 9.1 112 40-167 23-210 (250)
385 COG1224 TIP49 DNA helicase TIP 99.2 6E-10 1.3E-14 95.9 16.7 131 105-256 291-434 (450)
386 PRK10744 pstB phosphate transp 99.2 3.2E-11 6.9E-16 102.9 9.1 112 40-167 33-220 (260)
387 PRK14243 phosphate transporter 99.2 4.2E-11 9.2E-16 102.4 9.8 113 40-168 30-216 (264)
388 PRK14268 phosphate ABC transpo 99.2 3.2E-11 7E-16 102.8 9.0 112 40-167 32-218 (258)
389 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 3.6E-11 7.9E-16 116.0 10.4 108 41-166 474-649 (686)
390 PRK14263 phosphate ABC transpo 99.2 3.8E-11 8.2E-16 102.5 9.3 113 40-168 28-214 (261)
391 PRK14241 phosphate transporter 99.2 3.4E-11 7.3E-16 102.6 9.0 113 40-168 24-213 (258)
392 PRK13657 cyclic beta-1,2-gluca 99.2 4.1E-11 8.8E-16 113.7 10.5 109 41-165 356-533 (588)
393 PRK14235 phosphate transporter 99.2 3.5E-11 7.7E-16 103.0 9.1 112 40-167 39-227 (267)
394 COG4175 ProV ABC-type proline/ 99.2 5.7E-11 1.2E-15 100.8 10.1 111 40-164 48-227 (386)
395 PRK14265 phosphate ABC transpo 99.2 3.9E-11 8.4E-16 103.2 9.3 113 40-168 40-226 (274)
396 TIGR03375 type_I_sec_LssB type 99.2 4.9E-11 1.1E-15 115.2 11.0 110 41-166 486-664 (694)
397 PRK14260 phosphate ABC transpo 99.2 4.4E-11 9.6E-16 102.0 9.5 113 40-168 27-215 (259)
398 COG4988 CydD ABC-type transpor 99.2 7.2E-11 1.6E-15 107.7 11.3 111 40-166 341-519 (559)
399 PRK14267 phosphate ABC transpo 99.2 4E-11 8.7E-16 101.9 9.2 56 96-167 158-213 (253)
400 PRK14251 phosphate ABC transpo 99.2 4.5E-11 9.7E-16 101.5 9.4 112 40-167 24-211 (251)
401 PRK09984 phosphonate/organopho 99.2 4.1E-11 9E-16 102.3 9.2 60 95-168 160-219 (262)
402 cd03290 ABCC_SUR1_N The SUR do 99.2 5.7E-11 1.2E-15 98.7 9.8 57 94-165 147-205 (218)
403 KOG1514 Origin recognition com 99.2 1.2E-09 2.5E-14 101.3 19.1 226 12-259 396-660 (767)
404 PRK14236 phosphate transporter 99.2 3.8E-11 8.2E-16 103.1 9.0 112 40-167 45-232 (272)
405 PRK14245 phosphate ABC transpo 99.2 4.2E-11 9.1E-16 101.6 9.1 56 96-167 155-210 (250)
406 CHL00131 ycf16 sulfate ABC tra 99.2 4.1E-11 8.8E-16 101.7 9.0 57 95-166 159-215 (252)
407 CHL00095 clpC Clp protease ATP 99.2 5.6E-10 1.2E-14 109.4 18.1 201 12-234 509-781 (821)
408 TIGR00368 Mg chelatase-related 99.2 8.1E-10 1.7E-14 101.9 18.1 211 10-252 190-497 (499)
409 PRK14261 phosphate ABC transpo 99.2 4E-11 8.8E-16 101.8 8.9 56 96-167 158-213 (253)
410 PRK15093 antimicrobial peptide 99.2 3.2E-11 6.9E-16 106.3 8.5 59 95-167 166-224 (330)
411 KOG0058 Peptide exporter, ABC 99.2 4.7E-11 1E-15 111.1 9.9 112 41-168 489-669 (716)
412 PRK14237 phosphate transporter 99.2 4.6E-11 1E-15 102.3 9.2 112 40-167 40-227 (267)
413 TIGR00972 3a0107s01c2 phosphat 99.2 4.3E-11 9.2E-16 101.3 8.8 112 40-167 21-208 (247)
414 PRK11331 5-methylcytosine-spec 99.2 3.1E-10 6.7E-15 102.0 14.7 144 11-183 174-357 (459)
415 PRK07399 DNA polymerase III su 99.2 4.4E-10 9.6E-15 98.1 15.4 183 10-228 2-223 (314)
416 PRK14275 phosphate ABC transpo 99.2 5.2E-11 1.1E-15 103.0 9.5 112 40-167 59-246 (286)
417 TIGR02857 CydD thiol reductant 99.2 5.6E-11 1.2E-15 111.4 10.5 109 41-165 343-520 (529)
418 PRK10789 putative multidrug tr 99.2 7.9E-11 1.7E-15 111.3 11.5 110 41-166 336-514 (569)
419 PRK10982 galactose/methyl gala 99.2 2.6E-11 5.6E-16 112.6 8.0 113 40-167 18-199 (491)
420 PRK14239 phosphate transporter 99.2 4.4E-11 9.6E-16 101.5 8.7 56 96-167 157-212 (252)
421 PRK14249 phosphate ABC transpo 99.2 4.8E-11 1E-15 101.3 8.9 57 96-168 156-212 (251)
422 TIGR02203 MsbA_lipidA lipid A 99.2 7.9E-11 1.7E-15 111.4 11.2 109 41-165 353-531 (571)
423 PRK14255 phosphate ABC transpo 99.2 5.2E-11 1.1E-15 101.1 9.0 56 96-167 157-212 (252)
424 PRK14270 phosphate ABC transpo 99.2 5E-11 1.1E-15 101.2 8.8 113 40-168 24-212 (251)
425 TIGR03269 met_CoM_red_A2 methy 99.2 5.7E-11 1.2E-15 111.1 10.0 59 95-167 176-234 (520)
426 PRK14238 phosphate transporter 99.2 5.7E-11 1.2E-15 102.0 9.1 112 40-167 44-231 (271)
427 TIGR02204 MsbA_rel ABC transpo 99.2 8.5E-11 1.8E-15 111.3 11.2 110 41-166 361-539 (576)
428 PRK14244 phosphate ABC transpo 99.2 8.7E-11 1.9E-15 99.7 10.1 55 97-167 159-213 (251)
429 COG0470 HolB ATPase involved i 99.2 2.9E-10 6.4E-15 99.8 13.8 149 13-194 2-178 (325)
430 PRK14272 phosphate ABC transpo 99.2 6E-11 1.3E-15 100.7 9.1 57 96-168 157-213 (252)
431 TIGR01193 bacteriocin_ABC ABC- 99.2 8.9E-11 1.9E-15 113.7 11.4 109 41-166 495-673 (708)
432 PF05621 TniB: Bacterial TniB 99.2 8.6E-10 1.9E-14 94.1 15.8 189 45-249 60-284 (302)
433 COG0411 LivG ABC-type branched 99.2 1.8E-11 4E-16 100.4 5.5 115 40-168 24-216 (250)
434 TIGR01842 type_I_sec_PrtD type 99.2 8.7E-11 1.9E-15 110.5 10.9 110 41-165 339-517 (544)
435 TIGR01846 type_I_sec_HlyB type 99.2 9.1E-11 2E-15 113.4 11.3 110 41-166 478-656 (694)
436 cd03288 ABCC_SUR2 The SUR doma 99.2 1E-10 2.2E-15 99.6 10.3 112 40-167 41-220 (257)
437 COG0444 DppD ABC-type dipeptid 99.2 7.2E-11 1.6E-15 100.8 9.2 115 40-168 25-220 (316)
438 TIGR01192 chvA glucan exporter 99.2 1E-10 2.2E-15 110.9 11.2 110 41-166 356-534 (585)
439 PRK14266 phosphate ABC transpo 99.2 7.3E-11 1.6E-15 100.1 9.2 58 95-168 154-211 (250)
440 PRK14254 phosphate ABC transpo 99.2 7.1E-11 1.5E-15 102.1 9.3 112 40-167 59-244 (285)
441 PRK09700 D-allose transporter 99.2 3.7E-11 8E-16 112.1 8.0 113 40-167 25-210 (510)
442 PF07728 AAA_5: AAA domain (dy 99.2 4.4E-11 9.5E-16 92.2 7.1 113 48-175 1-139 (139)
443 smart00350 MCM minichromosome 99.2 7.9E-10 1.7E-14 102.9 16.7 226 13-256 204-506 (509)
444 PRK11288 araG L-arabinose tran 99.2 4.2E-11 9.1E-16 111.5 8.2 113 40-167 24-205 (501)
445 cd03283 ABC_MutS-like MutS-lik 99.2 8.5E-11 1.8E-15 96.2 8.9 116 37-167 16-153 (199)
446 PRK11160 cysteine/glutathione 99.2 9.8E-11 2.1E-15 110.7 10.6 110 41-166 361-538 (574)
447 COG4598 HisP ABC-type histidin 99.2 1E-10 2.2E-15 91.8 8.7 108 43-165 29-215 (256)
448 PRK14257 phosphate ABC transpo 99.2 7.3E-11 1.6E-15 103.8 9.0 111 41-167 103-289 (329)
449 PRK15134 microcin C ABC transp 99.2 5.4E-11 1.2E-15 111.5 8.6 59 95-167 164-222 (529)
450 PRK14258 phosphate ABC transpo 99.2 9E-11 1.9E-15 100.2 9.0 59 96-168 159-217 (261)
451 TIGR01257 rim_protein retinal- 99.2 6.1E-11 1.3E-15 123.4 9.2 113 40-167 1959-2135(2272)
452 KOG0057 Mitochondrial Fe/S clu 99.2 2.2E-10 4.8E-15 103.5 11.6 120 40-182 372-559 (591)
453 PLN03211 ABC transporter G-25; 99.2 1.2E-10 2.5E-15 111.4 10.3 109 41-164 89-268 (659)
454 PRK14271 phosphate ABC transpo 99.2 1E-10 2.2E-15 100.7 8.9 112 40-167 41-227 (276)
455 TIGR00958 3a01208 Conjugate Tr 99.2 1.4E-10 2.9E-15 112.3 10.8 109 40-166 501-678 (711)
456 PRK10261 glutathione transport 99.2 6.6E-11 1.4E-15 112.8 8.3 114 40-167 344-529 (623)
457 PRK10982 galactose/methyl gala 99.2 9.4E-11 2E-15 108.9 9.2 59 94-167 398-456 (491)
458 cd03236 ABC_RNaseL_inhibitor_d 99.2 2.2E-10 4.8E-15 97.3 10.5 58 95-167 147-204 (255)
459 COG0542 clpA ATP-binding subun 99.2 4.6E-10 1E-14 106.6 13.5 197 12-232 491-752 (786)
460 PRK04132 replication factor C 99.2 1.6E-09 3.4E-14 104.8 17.3 159 46-231 564-736 (846)
461 TIGR02633 xylG D-xylose ABC tr 99.2 7E-11 1.5E-15 110.0 8.0 113 40-167 21-206 (500)
462 TIGR01187 potA spermidine/putr 99.2 6.4E-11 1.4E-15 104.2 6.9 60 94-167 107-166 (325)
463 PRK08058 DNA polymerase III su 99.2 3.8E-10 8.3E-15 99.4 11.8 149 10-195 3-180 (329)
464 COG4133 CcmA ABC-type transpor 99.2 3.7E-10 8.1E-15 89.2 10.3 116 41-171 23-199 (209)
465 cd03289 ABCC_CFTR2 The CFTR su 99.1 2.3E-10 4.9E-15 98.3 9.8 111 40-166 24-201 (275)
466 PRK13409 putative ATPase RIL; 99.1 1.4E-10 3.1E-15 109.4 9.4 113 41-167 360-519 (590)
467 KOG0055 Multidrug/pheromone ex 99.1 2E-10 4.3E-15 112.8 10.3 116 36-167 367-553 (1228)
468 COG1123 ATPase components of v 99.1 1.5E-10 3.2E-15 105.9 8.9 114 40-167 29-220 (539)
469 TIGR02031 BchD-ChlD magnesium 99.1 1.3E-09 2.9E-14 102.8 15.6 195 47-257 17-261 (589)
470 KOG1970 Checkpoint RAD17-RFC c 99.1 1.3E-09 2.8E-14 98.5 14.6 214 1-234 71-320 (634)
471 PRK05707 DNA polymerase III su 99.1 1E-09 2.2E-14 96.4 13.7 129 45-196 21-177 (328)
472 COG4987 CydC ABC-type transpor 99.1 6.1E-10 1.3E-14 100.6 12.2 114 37-166 353-537 (573)
473 PRK13409 putative ATPase RIL; 99.1 2.8E-10 6.1E-15 107.5 10.3 109 43-167 96-276 (590)
474 PRK11288 araG L-arabinose tran 99.1 1.5E-10 3.3E-15 107.7 8.4 59 95-168 404-462 (501)
475 PRK10522 multidrug transporter 99.1 2.4E-10 5.2E-15 107.5 9.6 112 40-165 343-513 (547)
476 COG1101 PhnK ABC-type uncharac 99.1 1.9E-10 4.2E-15 92.6 7.6 111 40-164 26-211 (263)
477 COG0396 sufC Cysteine desulfur 99.1 3E-10 6.5E-15 92.5 8.8 112 40-166 24-208 (251)
478 PRK14252 phosphate ABC transpo 99.1 2.9E-10 6.3E-15 97.3 9.3 56 96-167 170-225 (265)
479 PRK10938 putative molybdenum t 99.1 3.7E-10 8.1E-15 104.9 10.7 59 95-167 409-467 (490)
480 PRK10261 glutathione transport 99.1 2.1E-10 4.6E-15 109.3 9.3 59 95-167 176-234 (623)
481 PRK15064 ABC transporter ATP-b 99.1 2.5E-10 5.4E-15 107.0 9.6 58 93-168 161-218 (530)
482 TIGR01817 nifA Nif-specific re 99.1 6.6E-10 1.4E-14 104.2 12.4 210 7-248 191-439 (534)
483 PRK13549 xylose transporter AT 99.1 1.5E-10 3.3E-15 107.9 8.0 113 40-167 282-470 (506)
484 PRK15134 microcin C ABC transp 99.1 1.9E-10 4.1E-15 107.8 8.7 59 95-167 433-491 (529)
485 PRK15064 ABC transporter ATP-b 99.1 1.7E-10 3.8E-15 108.1 8.1 111 40-168 339-501 (530)
486 COG4148 ModC ABC-type molybdat 99.1 1.3E-10 2.8E-15 97.0 6.3 114 40-167 18-194 (352)
487 PRK10636 putative ABC transpor 99.1 2.9E-10 6.3E-15 108.6 9.5 56 95-168 157-212 (638)
488 COG1129 MglA ABC-type sugar tr 99.1 3.9E-10 8.5E-15 102.4 9.8 136 40-190 28-239 (500)
489 PF07724 AAA_2: AAA domain (Cd 99.1 2.7E-10 5.8E-15 90.9 7.7 115 45-165 2-133 (171)
490 TIGR01257 rim_protein retinal- 99.1 2.6E-10 5.6E-15 118.9 9.4 112 40-167 950-1125(2272)
491 PRK12377 putative replication 99.1 2.1E-09 4.6E-14 90.5 13.3 100 46-161 101-205 (248)
492 TIGR02633 xylG D-xylose ABC tr 99.1 2.2E-10 4.9E-15 106.6 8.2 113 40-167 280-468 (500)
493 PRK15439 autoinducer 2 ABC tra 99.1 1.8E-10 3.9E-15 107.5 7.5 58 95-167 411-468 (510)
494 cd03280 ABC_MutS2 MutS2 homolo 99.1 7.6E-10 1.6E-14 90.7 10.4 109 39-162 20-151 (200)
495 COG1132 MdlB ABC-type multidru 99.1 4.3E-10 9.4E-15 106.3 9.9 112 40-167 349-529 (567)
496 COG3845 ABC-type uncharacteriz 99.1 5.7E-10 1.2E-14 99.8 10.0 139 40-193 24-237 (501)
497 PRK11147 ABC transporter ATPas 99.1 5.1E-10 1.1E-14 107.0 10.4 57 94-168 163-219 (635)
498 PRK10636 putative ABC transpor 99.1 2.3E-10 4.9E-15 109.3 7.9 111 40-168 332-493 (638)
499 PRK14246 phosphate ABC transpo 99.1 4.9E-10 1.1E-14 95.4 9.1 57 95-167 161-217 (257)
500 PRK10762 D-ribose transporter 99.1 2.7E-10 5.8E-15 106.1 8.0 58 95-167 403-460 (501)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-66 Score=439.85 Aligned_cols=260 Identities=70% Similarity=1.095 Sum_probs=251.6
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|.|++.|+++|+||||+++|+++|++.+..|+.+|++|..+||.||+|||||||||||||.|||++|++.++.|+++.++
T Consensus 140 M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS 219 (406)
T COG1222 140 MEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS 219 (406)
T ss_pred eeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.++|+|++.+.++++|..|+.++||||||||+|++..+|.++. ++.|.+.++.+.++|++|+++...+++-||++||
T Consensus 220 ElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~-t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 220 ELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG-TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred HHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC-CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 999999999999999999999999999999999999999998754 4578999999999999999999999999999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+++.|||+++||||||+.|+||.|+.+.|.+||+.|.+++.+..++|++.+|..|+|+||+||+++|.+|++.|+++++.
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhhcc
Q 024249 241 HVTQEDFEMAVAKVMKKETEK 261 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~~~~~~ 261 (270)
.++++||.+|+.++.....+.
T Consensus 379 ~Vt~~DF~~Av~KV~~~~~~~ 399 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKKKKL 399 (406)
T ss_pred eecHHHHHHHHHHHHhccccc
Confidence 999999999999998855443
No 2
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-63 Score=401.35 Aligned_cols=269 Identities=89% Similarity=1.332 Sum_probs=263.0
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|-||++|+.+|+.+||+++|+++|++.+..|.+||++|+++|+.+|+++||+||||+|||.|++++|.+..|.+++++++
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs 215 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 215 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.++|+|+++..++++|-.|+.++|+|||+||+|.+...|.+++ ++.|++.++.+.+++++++++...+++-||++||
T Consensus 216 elvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatn 294 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN 294 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEecc
Confidence 999999999999999999999999999999999999999998754 4589999999999999999999999999999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+++-+|++++|+||+|+.|+||+|+++.|.+||+.+.+++.+..++++..+|+.+.|.||++++.+|.+|+++|+++++.
T Consensus 295 ridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrv 374 (404)
T KOG0728|consen 295 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRV 374 (404)
T ss_pred ccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhhccchhhhhhhC
Q 024249 241 HVTQEDFEMAVAKVMKKETEKNMSLRKLWK 270 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~ 270 (270)
++|+|||+-|+.+++...+.+|++++++|+
T Consensus 375 hvtqedfemav~kvm~k~~e~nms~~kl~k 404 (404)
T KOG0728|consen 375 HVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 404 (404)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHhhC
Confidence 999999999999999999999999999997
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-56 Score=399.78 Aligned_cols=261 Identities=45% Similarity=0.769 Sum_probs=247.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
..|+++|+||||++++|.+|++.+.+|++||+.|..||+.+|++||+|||||||||+++|++|.+.+++|+.+.+.++.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
+|+|++++.++++|.+|+..+|+|||+||+|.++..|++.. .....+++..+|.+|+++...++++||++||+++.
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~----~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS----SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc----cchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 99999999999999999999999999999999999995322 25677899999999999998899999999999999
Q ss_pred chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--CCCC
Q 024249 165 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER--RIHV 242 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~--~~~i 242 (270)
||++++||||||+.|++|+|+.+.|.+||+.++++++...++|+..||+.|+||||+||..+|++|+..|+++. ...+
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i 662 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEI 662 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874 4789
Q ss_pred CHHHHHHHHHHHhhhhhccchhhhhhh
Q 024249 243 TQEDFEMAVAKVMKKETEKNMSLRKLW 269 (270)
Q Consensus 243 ~~~d~~~a~~~~~~~~~~~~~~~~~~~ 269 (270)
+.+||++|+..+.++.+...++.+.-|
T Consensus 663 ~~~hf~~al~~~r~s~~~~~~~~Ye~f 689 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPSLTSELLEKYEDF 689 (693)
T ss_pred cHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 999999999999999999888876543
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-54 Score=385.48 Aligned_cols=256 Identities=45% Similarity=0.735 Sum_probs=240.1
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
.||+++|+||||+++...+|+.+|..|+++|+.|+.+|+..|.||||+||||||||.|||++|++.+..|+.|.+.++.+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
+|+|+.+..++.+|++|+..+|||||+||+|.|++.|+.. ......+++.++|.+|++.....+|+||++||+|+-
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~----~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE----GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC----CchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 9999999999999999999999999999999999999643 245677889999999999988899999999999999
Q ss_pred chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhc--cCCCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhc--
Q 024249 165 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR--RMNLMRGIDLKKIAEKMN--GASGAELKAVCTEAGMFALRER-- 238 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~--g~~~~dl~~l~~~a~~~a~~~~-- 238 (270)
+|++++||||||+.++++.|+.++|.+||+.+++ +..+..++|+++||..+. ||||+||..||++|.+.|+++.
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 667789999999999877 9999999999999999999862
Q ss_pred --------------CCCCCHHHHHHHHHHHhhhhhccchh
Q 024249 239 --------------RIHVTQEDFEMAVAKVMKKETEKNMS 264 (270)
Q Consensus 239 --------------~~~i~~~d~~~a~~~~~~~~~~~~~~ 264 (270)
...++..||++|++++.++.+.++..
T Consensus 740 ~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~ 779 (802)
T KOG0733|consen 740 EIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRK 779 (802)
T ss_pred hccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHH
Confidence 13578889999999999988877654
No 5
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-53 Score=348.86 Aligned_cols=257 Identities=60% Similarity=1.021 Sum_probs=247.2
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
||||+-|..+|.||||+++|+++|++.+..|+.||++|..+|+.+|++|+|||+||||||.||+++|+...+.|+++-++
T Consensus 174 mK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGs 253 (440)
T KOG0726|consen 174 MKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGS 253 (440)
T ss_pred eecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.++|.|++.+.++++|..|..++|+|+||||||.+..+|.++. ++...+.++.+.++|++++++...+.+-||++||
T Consensus 254 eLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~-SggerEiQrtmLELLNQldGFdsrgDvKvimATn 332 (440)
T KOG0726|consen 254 ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN 332 (440)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCC-CccHHHHHHHHHHHHHhccCccccCCeEEEEecc
Confidence 999999999999999999999999999999999999999998753 4556788999999999999999889999999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+++.+||++.||||+|+.|+||.|+...+..||..|..++.+..+++++.+...-+.+||+||+++|.+|++.|+++++.
T Consensus 333 rie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm 412 (440)
T KOG0726|consen 333 RIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM 412 (440)
T ss_pred cccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhh
Q 024249 241 HVTQEDFEMAVAKVMKKE 258 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~~~ 258 (270)
.++.+||..|...++.+.
T Consensus 413 ~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 413 KVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred hccHHHHHHHHHHHHHhc
Confidence 999999999999998754
No 6
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-52 Score=336.84 Aligned_cols=256 Identities=56% Similarity=0.960 Sum_probs=246.1
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|.|+..|..+|+||||+++|+++|.+.+..|+.|++.|.++|+.+|+++|+|||||||||.++|+-|...+..|..+.+.
T Consensus 160 MevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgP 239 (424)
T KOG0652|consen 160 MEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGP 239 (424)
T ss_pred eeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcch
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
.+.+.++|.+.+.++.+|+.|+..+|+||||||+|.+..+|.++ ....|.+.++.+.+++++++++..+..+-||++||
T Consensus 240 QLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDS-ek~GDREVQRTMLELLNQLDGFss~~~vKviAATN 318 (424)
T KOG0652|consen 240 QLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS-EKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN 318 (424)
T ss_pred HHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccc-cccccHHHHHHHHHHHHhhcCCCCccceEEEeecc
Confidence 99999999999999999999999999999999999999988764 34567899999999999999999899999999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+.+-+||+++|.||+|+.|+||.|+.+.|..|++.|.+++....+++++++|..|++|+|+..+++|-+|++.|++++..
T Consensus 319 RvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at 398 (424)
T KOG0652|consen 319 RVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT 398 (424)
T ss_pred cccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 024249 241 HVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~~ 257 (270)
.++.+||.+++.++...
T Consensus 399 ev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 399 EVTHEDFMEGILEVQAK 415 (424)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999998654
No 7
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-51 Score=333.31 Aligned_cols=254 Identities=54% Similarity=0.943 Sum_probs=244.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
+..|+++|.||||++-+|+++.+.+..|+.+.++|+..|+.||+++|+|||||||||+|++++|++....++++.++++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 84 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
++|.|++...++.+|..|+.++|+||||||+|.+..+|-+. ..+.|.+.++.+.+++++|+++....++-||++||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfda-qtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDA-QTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccc-cccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 99999999999999999999999999999999999888764 45678999999999999999999888999999999999
Q ss_pred CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 024249 164 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 243 (270)
Q Consensus 164 ~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~ 243 (270)
.+||+++||||+|++|+||.|+..+++-+|.....++.+..++|++.+..+.+-.||+||.++|++|++.|+++++..+.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl 385 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVL 385 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 024249 244 QEDFEMAVAKVMKKE 258 (270)
Q Consensus 244 ~~d~~~a~~~~~~~~ 258 (270)
+.||++|.+...+..
T Consensus 386 ~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 386 QKDFEKAYKTVVKKD 400 (408)
T ss_pred HHHHHHHHHhhcCCc
Confidence 999999999887644
No 8
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-50 Score=368.36 Aligned_cols=260 Identities=41% Similarity=0.717 Sum_probs=239.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
++|.|+|+||||+++.|.+|.+.|..|++||++|.+ |+.+..|||||||||||||.+||++|-+++..|+.+.+.++.+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 689999999999999999999999999999999966 8899999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc--CCCCeEEEEEeCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE--ASNKIKVLMATNRI 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~vi~tt~~~ 162 (270)
.|+|+.+++++++|++|+..+|||||+||+|.+.++|+.+++++ ..+.+++.++|.++|++. ..++++||++||+|
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG--GVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG--GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc--ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999997554433 356788889999999887 45689999999999
Q ss_pred CCchhhhcCCCCcceEEEeCCC-CHHHHHHHHHHhhccCCCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhc--
Q 024249 163 DILDQALLRPGRIDRKIEFPNP-NEESRLDILKIHSRRMNLMRGIDLKKIAEKMN-GASGAELKAVCTEAGMFALRER-- 238 (270)
Q Consensus 163 ~~l~~~l~r~~r~~~~i~~~~p-~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~-g~~~~dl~~l~~~a~~~a~~~~-- 238 (270)
|.+|++++||||||+-+++.++ +.+.+..+|+...+++.+..++|+.++|+.++ .|||+|+-++|..|+..|+++.
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999776 67888999999999999999999999999996 7999999999999999999862
Q ss_pred ---------------CCCCCHHHHHHHHHHHhhhhhccchhhhh
Q 024249 239 ---------------RIHVTQEDFEMAVAKVMKKETEKNMSLRK 267 (270)
Q Consensus 239 ---------------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~ 267 (270)
...+++|||.+|.+++.++.+..++.-++
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye 945 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYE 945 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHH
Confidence 35789999999999999999887765443
No 9
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-50 Score=331.19 Aligned_cols=255 Identities=62% Similarity=0.974 Sum_probs=246.7
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|.||..|+++|+|++|-.++++.|.+.+..|+.||+.|.++|+.+|+++|+|||||||||..++++|+..+..++++-++
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.++|+|++...++++|++|+..+.||||+||+|.+.++|-+. ..+.|.+.++.+++++++++++....++-|+++||
T Consensus 246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfdd-g~ggdnevqrtmleli~qldgfdprgnikvlmatn 324 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDD-GAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN 324 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccC-CCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecC
Confidence 99999999999999999999999999999999999999999764 45678899999999999999999999999999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+++.+|++++||||+|+.++|..|+.+.|..||+.|.+.+....++.++.+|..+..-+|++|.++|.+|+++|++.++.
T Consensus 325 rpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 325 RPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred CCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 024249 241 HVTQEDFEMAVAKVMK 256 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~ 256 (270)
..|+.||.+|+.++.+
T Consensus 405 ~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVVK 420 (435)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999999987
No 10
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3e-49 Score=352.42 Aligned_cols=257 Identities=54% Similarity=0.925 Sum_probs=240.1
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|.+++.|+++|+||+|+++++++|.+.+..|+.+|+.|..+|+.+|+++||+||||||||++++++|++.+.+++.+.+.
T Consensus 134 ~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s 213 (398)
T PTZ00454 134 LQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGS 213 (398)
T ss_pred hcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
.+...+.++....++.+|..|...+|+||||||+|.++..+.+ +..+.+...++.+.+++..++++....++.||++||
T Consensus 214 ~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~-~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN 292 (398)
T PTZ00454 214 EFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFD-AQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN 292 (398)
T ss_pred HHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccc-ccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 9999999999999999999999999999999999999987743 233456677888999999998877777899999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+++.+|++++|+|||+..|+++.|+.++|.+||+.++.+.....++++..++..|+||+|+||+++|++|++.|+++++.
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~ 372 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRY 372 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhh
Q 024249 241 HVTQEDFEMAVAKVMKKE 258 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~~~ 258 (270)
.++.+||+.|+.++.+..
T Consensus 373 ~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 373 VILPKDFEKGYKTVVRKT 390 (398)
T ss_pred ccCHHHHHHHHHHHHhcc
Confidence 999999999999997753
No 11
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-49 Score=337.88 Aligned_cols=258 Identities=43% Similarity=0.649 Sum_probs=238.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~ 85 (270)
-|.+.|+||.|+++.|+-|++.+..|+..|+.|+.+ ..|=+++|++||||||||.|||++|.+++..|+.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 366899999999999999999999999999999853 2455899999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCC-CC---eEEEEEeCC
Q 024249 86 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS-NK---IKVLMATNR 161 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~---~~vi~tt~~ 161 (270)
|-|+.++.++-+|+.|+.++|++|||||||.||..|. .++.....+++-.++|.+|++.... ++ |.|+++||-
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG---~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRG---GSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCC---CccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC
Confidence 9999999999999999999999999999999999984 3455667788888999999887543 23 889999999
Q ss_pred CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc---
Q 024249 162 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER--- 238 (270)
Q Consensus 162 ~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~--- 238 (270)
|.+||.+++| ||.+.|++|.|+.+.|..+++..++......+++++.|++.++||||+||.++|++|.+.+.++.
T Consensus 362 PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g 439 (491)
T KOG0738|consen 362 PWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAG 439 (491)
T ss_pred CcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999852
Q ss_pred --------------CCCCCHHHHHHHHHHHhhhhhccchhhhhhh
Q 024249 239 --------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 269 (270)
Q Consensus 239 --------------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~ 269 (270)
..+++.+||+.|++++.++.+...++.++.|
T Consensus 440 ~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW 484 (491)
T KOG0738|consen 440 LTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKW 484 (491)
T ss_pred CCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHH
Confidence 2468999999999999999999999999999
No 12
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-48 Score=342.48 Aligned_cols=244 Identities=41% Similarity=0.661 Sum_probs=231.9
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhh
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 87 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~ 87 (270)
+++|+|+-|.++.+++|++++.. +++|+-|.++|-.-|++|||+||||||||.|||++|++.+.||++..++++...++
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 67899999999999999999886 89999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 88 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 88 ~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|.+.++++++|+.|+..+||||||||+|.+..+|... .-.-..+.+.++|.+|+++..+.+++||++||.++.+|+
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 9999999999999999999999999999999988532 112567789999999999999999999999999999999
Q ss_pred hhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 024249 168 ALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDF 247 (270)
Q Consensus 168 ~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~ 247 (270)
++.||||||..+.+|.|+..-|.+||+.|+.+..+..++|+..||.-|.||+|+||.+++.+|+.+|...+...+++.|+
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~L 534 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHL 534 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 024249 248 EMAVAKVMK 256 (270)
Q Consensus 248 ~~a~~~~~~ 256 (270)
|.|-.+++=
T Consensus 535 E~akDrIlM 543 (752)
T KOG0734|consen 535 EFAKDRILM 543 (752)
T ss_pred hhhhhheee
Confidence 999888763
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-48 Score=345.93 Aligned_cols=225 Identities=42% Similarity=0.687 Sum_probs=208.5
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhh
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 87 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~ 87 (270)
++.|++|||+++.+.++.+.+.. +.||+.|.++|+.||+|+|||||||||||.||++||++++.+++.+++.++.+.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 67899999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCC----CCeEEEEEeCCCC
Q 024249 88 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS----NKIKVLMATNRID 163 (270)
Q Consensus 88 ~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~----~~~~vi~tt~~~~ 163 (270)
|+.++.++++|..|....|||+||||||.+.++|.+ ....-.++.+.+++..|+++... .+|.||++||+|+
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999998843 12222345666777777765433 5799999999999
Q ss_pred CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 024249 164 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 237 (270)
Q Consensus 164 ~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~ 237 (270)
.+|++++|.||||++|.+..|+..+|.+||+..++.+.+..++|+..||..|+||+|+||.+||.+|+..|+++
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
No 14
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=343.77 Aligned_cols=256 Identities=60% Similarity=1.028 Sum_probs=238.8
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|++++.|+++|+||+|+++++++|.+++..|+.+|+.|.++|+.+|.+++|+||||||||++++++|++.+.+++.+.++
T Consensus 172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s 251 (438)
T PTZ00361 172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGS 251 (438)
T ss_pred cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.+.+.+.....++.+|..|..+.|+||||||+|.++..+... .++.+...++.+.+++..++++....++.||++||
T Consensus 252 eL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~-~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATN 330 (438)
T PTZ00361 252 ELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDA-TSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATN 330 (438)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCC-CCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecC
Confidence 99999999999999999999999999999999999999877532 23445667788889999998876677899999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+++.+|++++|+|||+..|+|+.|+.++|.+||+.++.......++++..++..++||+|+||+++|++|++.|+++++.
T Consensus 331 r~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~ 410 (438)
T PTZ00361 331 RIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRM 410 (438)
T ss_pred ChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 024249 241 HVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~~ 257 (270)
.|+++||+.|+.+++..
T Consensus 411 ~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 411 KVTQADFRKAKEKVLYR 427 (438)
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 99999999999998664
No 15
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1e-46 Score=337.36 Aligned_cols=259 Identities=64% Similarity=1.054 Sum_probs=239.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
.+.+.|+++|++|+|++++++++.+.+..|+.+++.|..+|+.+|.++||+||||||||++++++|.+.+.+++.+.+.+
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
+...+.+.....++.+|..|....|+||||||+|.+++.+.... .+.+...++.+..++..++++....++.||+|||+
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~ 279 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 279 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999998775432 23356677888899988887766678999999999
Q ss_pred CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 024249 162 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH 241 (270)
Q Consensus 162 ~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~ 241 (270)
++.+|++++|+|||+..|++++|+.++|.+||+.+++......++++..+|..|+||+|+||.++|++|++.|+++....
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~ 359 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTE 359 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999998888788999999999999999999999999999999999899
Q ss_pred CCHHHHHHHHHHHhhhhhcc
Q 024249 242 VTQEDFEMAVAKVMKKETEK 261 (270)
Q Consensus 242 i~~~d~~~a~~~~~~~~~~~ 261 (270)
++.+||+.|+..+.+....+
T Consensus 360 i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 360 VTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred cCHHHHHHHHHHHhcccccc
Confidence 99999999999998755544
No 16
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-45 Score=342.00 Aligned_cols=252 Identities=45% Similarity=0.761 Sum_probs=235.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~ 85 (270)
-+.++|+|++|.++.+++|++++.. |++|+.|..+|...|+++||+||||||||.|||++|++.+.||+.++++++...
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3458999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 86 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+.+....+++.+|..|+..+|||+|+||+|.+...|......+.+.+-...+.+++-+||++..+.+++|+++||+++.+
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 99999999999999999999999999999999999863234455566677899999999999888899999999999999
Q ss_pred hhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q 024249 166 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 244 (270)
Q Consensus 166 ~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~ 244 (270)
|++++||||||+.|.++.|+...|.+|++.|++.... ..++|+..+|.+|+||+|+||.++|.+|+..|.++....|+.
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~ 543 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGT 543 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccch
Confidence 9999999999999999999999999999999998887 477889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 024249 245 EDFEMAVAKVMKKE 258 (270)
Q Consensus 245 ~d~~~a~~~~~~~~ 258 (270)
.||+.|+.+++...
T Consensus 544 ~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 544 KDLEYAIERVIAGM 557 (774)
T ss_pred hhHHHHHHHHhccc
Confidence 99999999876643
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.8e-44 Score=346.76 Aligned_cols=263 Identities=47% Similarity=0.783 Sum_probs=241.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
.+|+++|++|+|++..++.|.+.+..|+.+++.+..+|+.++.++||+||||||||++++++|++.+.+++.+++.++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
+|+|+.++.++.+|..|+...|+||||||+|.+++.+... .......+.+.+++..++++....+++||+|||+++.
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~---~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ 602 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR---FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDI 602 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC---CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhh
Confidence 9999999999999999999999999999999999877422 1223455677788888888777778999999999999
Q ss_pred chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Q 024249 165 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER------ 238 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~------ 238 (270)
+|++++|+|||+..+++|.|+.++|.+||+.+.+......++++..+|+.|+||+|+||.++|++|+..|+++.
T Consensus 603 ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~ 682 (733)
T TIGR01243 603 LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAK 682 (733)
T ss_pred CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999988888889999999999999999999999999999998742
Q ss_pred ------------CCCCCHHHHHHHHHHHhhhhhccchhhhhhhC
Q 024249 239 ------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 270 (270)
Q Consensus 239 ------------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~ 270 (270)
...++.+||+.|+.++.++.+..++..+..|+
T Consensus 683 ~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~ 726 (733)
T TIGR01243 683 EKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLA 726 (733)
T ss_pred hhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 23799999999999999999999988888873
No 18
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-45 Score=305.48 Aligned_cols=260 Identities=37% Similarity=0.601 Sum_probs=233.1
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
|...|++.|+||+|++..++.|++.+..|++.|++|..- -.|=++|||+||||||||.|++++|-+.+..|+.++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 456789999999999999999999999999999999742 2345889999999999999999999999999999999999
Q ss_pred HHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCC-CCeEEEEEeCC
Q 024249 83 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS-NKIKVLMATNR 161 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~~~vi~tt~~ 161 (270)
.++|.|+.++.++.+|+.|+.++|+||||||+|.+|+.|++ +.....++.-.++|-+|.+...+ .++.|+++||-
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e----nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE----NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC----CchHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 99999999999999999999999999999999999998753 44556677788999999887544 58999999999
Q ss_pred CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCC-CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Q 024249 162 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN-LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER-- 238 (270)
Q Consensus 162 ~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~-- 238 (270)
|..+|.+++| ||++.|++|.|+...|..||+.++.... ...+.|+.+|+.+|+||||+||..+++.|.+..+++.
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 9999999999999999999999987765 4678899999999999999999999999999888761
Q ss_pred --------------------------------------------CCCCCHHHHHHHHHHHhhhhhccchhhhhhh
Q 024249 239 --------------------------------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 269 (270)
Q Consensus 239 --------------------------------------------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~ 269 (270)
...++..||..++.++.|+.+..++.-++.|
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~F 431 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKF 431 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 1568999999999999999988887766554
No 19
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=6.6e-44 Score=317.84 Aligned_cols=252 Identities=64% Similarity=1.044 Sum_probs=232.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
.+++.|.++|++|+|+++++++|.+++..|+.+++.|..+|+.+|.+++|+||||||||++++++|++.+.+++.+.+.+
T Consensus 112 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~ 191 (364)
T TIGR01242 112 EVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 191 (364)
T ss_pred eeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
+...+.+.....++.+|..+....|+||||||+|.++..+... ..+.+...++.+.+++..++++....++.||+|||+
T Consensus 192 l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~-~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 192 LVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDS-GTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccC-CCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 9888999888899999999999999999999999998776542 234466777888899988887655678999999999
Q ss_pred CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 024249 162 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH 241 (270)
Q Consensus 162 ~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~ 241 (270)
++.++++++|+|||+..++++.|+.++|.+|++.+........++++..++..++||+|+||.++|.+|++.|+++++..
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999888877777899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 024249 242 VTQEDFEMAVAKV 254 (270)
Q Consensus 242 i~~~d~~~a~~~~ 254 (270)
|+.+||++|+..+
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999876
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4e-44 Score=291.73 Aligned_cols=246 Identities=36% Similarity=0.600 Sum_probs=221.6
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
+.+++.+++|++|+++.|+...-++.. +.+|+.|..+ .|++||+|||||||||++||++|++.+.+++.++...+.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 456788999999999999988766554 8899988664 589999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 84 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
+.++|++..++++++++|...+|||+||||+|.+.-.|.= ..........+..+|.+|+++..+.+++.|++||+++
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRry---QelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~ 265 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRY---QELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE 265 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhH---HHhcccHHHHHHHHHHhccCcccCCceEEEeecCChh
Confidence 9999999999999999999999999999999998754421 1233445677888999999998888999999999999
Q ss_pred CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHhcCCCC
Q 024249 164 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELK-AVCTEAGMFALRERRIHV 242 (270)
Q Consensus 164 ~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~-~l~~~a~~~a~~~~~~~i 242 (270)
.+|+++++ ||..+|+|..|+.++|.+|++.+.+++++.-+.++..+++.|.|+||+||+ .++..|...|+.+++..+
T Consensus 266 ~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v 343 (368)
T COG1223 266 LLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKV 343 (368)
T ss_pred hcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhh
Confidence 99999988 999999999999999999999999999998889999999999999999996 588889999999999999
Q ss_pred CHHHHHHHHHHHhhhh
Q 024249 243 TQEDFEMAVAKVMKKE 258 (270)
Q Consensus 243 ~~~d~~~a~~~~~~~~ 258 (270)
+.+|++.|+..-++..
T Consensus 344 ~~edie~al~k~r~~r 359 (368)
T COG1223 344 EREDIEKALKKERKRR 359 (368)
T ss_pred hHHHHHHHHHhhcccc
Confidence 9999999999865543
No 21
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.5e-42 Score=320.26 Aligned_cols=253 Identities=42% Similarity=0.738 Sum_probs=230.4
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
.++..|.++|+||+|+++.++++.+.+.. +.+++.|..+|...+.++||+||||||||++++++|++.+.+++.+++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 35667889999999999999999998876 89999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
+...+.+...+.++.+|..|....|+||||||+|.++..+... ..+.+......+..++..++++..+.++.||+|||.
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~-~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC-cCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 9999999989999999999999999999999999999876432 223344556777888889988777778999999999
Q ss_pred CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 024249 162 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH 241 (270)
Q Consensus 162 ~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~ 241 (270)
++.+|++++|+|||+..++++.|+.++|.+|++.+++......+.++..+|..+.||+|+||..+|++|+..|.+++...
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~ 282 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTE 282 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999988777778899999999999999999999999999998888889
Q ss_pred CCHHHHHHHHHHHhh
Q 024249 242 VTQEDFEMAVAKVMK 256 (270)
Q Consensus 242 i~~~d~~~a~~~~~~ 256 (270)
++.+||+.|+..+..
T Consensus 283 i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 283 ITMNDIEEAIDRVIA 297 (495)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999999865
No 22
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=321.20 Aligned_cols=251 Identities=52% Similarity=0.777 Sum_probs=232.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
..+.++|++++|++..++.+.+.+..++.+++.|...++.++.++||+||||||||++++++|.+.+.+++.+.+.++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
+|+|+.++.++.+|..|+..+|||||+||+|.+++.++. +.+....+.+.+++..+++.....++.||++||.++.
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~----~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP----SEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCC----CCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 999999999999999999999999999999999998843 2223336788888889988888889999999999999
Q ss_pred chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCC--CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-CCC
Q 024249 165 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN--LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER-RIH 241 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~-~~~ 241 (270)
+|++++|+|||+..+++|+|+.++|.+|++.++.... +..++++..+++.|+||+|+||..+|++|.+.++++. ...
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999988544 3578999999999999999999999999999999888 788
Q ss_pred CCHHHHHHHHHHHhhhhh
Q 024249 242 VTQEDFEMAVAKVMKKET 259 (270)
Q Consensus 242 i~~~d~~~a~~~~~~~~~ 259 (270)
++.+||.+|++.+.++.+
T Consensus 471 ~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 471 VTLDDFLDALKKIKPSVT 488 (494)
T ss_pred ccHHHHHHHHHhcCCCCC
Confidence 999999999999777654
No 23
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-42 Score=315.02 Aligned_cols=226 Identities=41% Similarity=0.684 Sum_probs=213.7
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhh
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 87 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~ 87 (270)
...|+||+|+.++++.+++.|.+|-+.|.+|.+..++.+.+||||||||||||.|+.++|...+..++.+.+.++..+|+
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 88 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 88 ~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|..++.++.+|.+|...+|||+|+||+|.+.++|+...+ ..+.+++.++|.+|++...-++++|+++|.+|+.+|+
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT----GVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST----GVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC----CchHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 999999999999999999999999999999999864332 2355778889999999888889999999999999999
Q ss_pred hhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 024249 168 ALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 237 (270)
Q Consensus 168 ~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~ 237 (270)
+++||||+|+.++-+.|++.+|.+|++.+........++|++.+|..|+||+|+||..++..|.+.|+++
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888889999999999999999999999999999988765
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-43 Score=319.34 Aligned_cols=250 Identities=42% Similarity=0.725 Sum_probs=235.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~ 85 (270)
...++|.|++|.++.++++.+.+.. +++|.-|..+|..-|++++|+||||||||.|+|++|++.+.|++.++++++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3457899999999999999999887 899999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 86 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
++|-+..+++++|.+|+.++|||+||||+|++...|.... ++.+.+..+.+.+++.++|++..+.++.|+++||+++-+
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~-GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVl 301 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL-GGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVL 301 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCC-CCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccc
Confidence 9999999999999999999999999999999999986543 334455566889999999999888899999999999999
Q ss_pred hhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 024249 166 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 245 (270)
Q Consensus 166 ~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 245 (270)
|++++||||||+.+.++.|+-..|.+|++.|.++.....++|+..+|..|+||+|+|+.+++.+|+..|.+++...+++.
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~ 381 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMR 381 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 024249 246 DFEMAVAKVMKK 257 (270)
Q Consensus 246 d~~~a~~~~~~~ 257 (270)
||++|+.+++.-
T Consensus 382 ~i~ea~drv~~G 393 (596)
T COG0465 382 DIEEAIDRVIAG 393 (596)
T ss_pred chHHHHHHHhcC
Confidence 999999999863
No 25
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.3e-42 Score=313.36 Aligned_cols=254 Identities=27% Similarity=0.428 Sum_probs=219.0
Q ss_pred CCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhh
Q 024249 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 86 (270)
Q Consensus 7 ~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~ 86 (270)
++++|++|+|++..|+.+.+....+ +.....+|+.+|+++||+||||||||++++++|++.+.+++.+++..+.+.+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 4678999999999999998765442 3446778999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 87 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+|+.+..++.+|..|...+||||||||+|.++..+.. .+......+.+..++..++. .+.+++||+|||+++.+|
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~---~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES---KGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC---CCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 9999999999999999999999999999998875422 12223445666667776653 356799999999999999
Q ss_pred hhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q 024249 167 QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL--MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 244 (270)
Q Consensus 167 ~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~ 244 (270)
++++|+||||+.++++.|+.++|.+||+.++.+... ..+.++..+|..|+||||+||.++|.+|+..|..+.+ .++.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCH
Confidence 999999999999999999999999999999887643 3578999999999999999999999999999987654 7899
Q ss_pred HHHHHHHHHHhhh--hhccchhhhhhh
Q 024249 245 EDFEMAVAKVMKK--ETEKNMSLRKLW 269 (270)
Q Consensus 245 ~d~~~a~~~~~~~--~~~~~~~~~~~~ 269 (270)
+||..|+..+.|. ....+++..+-|
T Consensus 454 ~dl~~a~~~~~Pls~~~~e~i~~~~~W 480 (489)
T CHL00195 454 DDILLALKQFIPLAQTEKEQIEALQNW 480 (489)
T ss_pred HHHHHHHHhcCCCcccCHHHHHHHHHH
Confidence 9999999999986 355567777777
No 26
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-43 Score=290.49 Aligned_cols=250 Identities=54% Similarity=0.900 Sum_probs=236.7
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
+...+++|++++|+-.++.++++.+..|+.+|+++.++||.+|.+++||||||+|||.+++++|...++.++.+..+.+.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 84 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
.++.|+..+.+++.|..|..+.||+||+||+|.+.+.+.. .....|...++.+.+++++++++...+++-+|+|||+++
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~s-e~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFS-EGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEec-cccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 9999999999999999999999999999999999988843 345667889999999999999998888999999999999
Q ss_pred CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 024249 164 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 243 (270)
Q Consensus 164 ~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~ 243 (270)
.++++++|+||+++.+++|.|+...|..|++.+.........+|.+.+....+||.|+|+.+.|++|.+.|+......+-
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl 362 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVL 362 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHh
Confidence 99999999999999999999999999999999988887778899999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHH
Q 024249 244 QEDFEMAVAKV 254 (270)
Q Consensus 244 ~~d~~~a~~~~ 254 (270)
.|||..++.++
T Consensus 363 ~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 363 HEDFMKLVRKQ 373 (388)
T ss_pred HHHHHHHHHHH
Confidence 99999999877
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-42 Score=291.63 Aligned_cols=244 Identities=38% Similarity=0.646 Sum_probs=218.2
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcC-CCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhh
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLG-IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 86 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~ 86 (270)
.++|+||+|+++.++++.+.+..|+++|++|..-+ ..++.+|||+||||||||.+|+++|.+.++.++.+..+.+..+|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 37899999999999999999999999999996433 57899999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCC--CeEEEEEeCCCCC
Q 024249 87 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN--KIKVLMATNRIDI 164 (270)
Q Consensus 87 ~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~vi~tt~~~~~ 164 (270)
+|+.++.++.+|..|...+|+||||||+|.+++.|. ++....+...-.+++..-+++..+. .+.|+++||+|.+
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 999999999999999999999999999999998872 2334455556677887778776555 4899999999999
Q ss_pred chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----c--
Q 024249 165 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE----R-- 238 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~----~-- 238 (270)
+|.+++| |+.+.+.++.|+..+|.+||+.+++...+.+++|+.++|..|+||||+||+.+|..|+...+++ .
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~ 321 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETG 321 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhccc
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999888764 1
Q ss_pred ----------------------CCCCCHHHHHHHHHHHhhh
Q 024249 239 ----------------------RIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 239 ----------------------~~~i~~~d~~~a~~~~~~~ 257 (270)
..++.++||..|...+-..
T Consensus 322 ~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 322 LLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred chhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 2568889999998866543
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1e-40 Score=312.28 Aligned_cols=248 Identities=43% Similarity=0.773 Sum_probs=226.0
Q ss_pred CCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhh
Q 024249 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 86 (270)
Q Consensus 7 ~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~ 86 (270)
+.++|+|++|+++.++++.+.+.. +.+++.|..+|...+.++||+||||||||++++++|++.+.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 457899999999999999988766 7899999999999999999999999999999999999999999999999998888
Q ss_pred hchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 87 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.+.....++.+|..|....|+||||||+|.++..+... ..+.+......+..++..++++..+.++.||++||+++.+|
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAG-IGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCC-CCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 88888889999999999999999999999998776432 22344556678888999998877777899999999999999
Q ss_pred hhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 024249 167 QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQED 246 (270)
Q Consensus 167 ~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d 246 (270)
++++|+|||+..+.++.|+.++|.+||+.+++......+.++..+|..+.||+|+||..+|++|+..+.+++...++.+|
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~d 415 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKE 415 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence 99999999999999999999999999999998877777889999999999999999999999999999999988999999
Q ss_pred HHHHHHHHhh
Q 024249 247 FEMAVAKVMK 256 (270)
Q Consensus 247 ~~~a~~~~~~ 256 (270)
|+.|+.+++.
T Consensus 416 l~~Ai~rv~~ 425 (638)
T CHL00176 416 IDTAIDRVIA 425 (638)
T ss_pred HHHHHHHHHh
Confidence 9999999854
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.6e-39 Score=294.05 Aligned_cols=251 Identities=39% Similarity=0.653 Sum_probs=208.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC----------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---------- 72 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~---------- 72 (270)
++++|+++|++|+|++++++++.+.+..|+.+|+.|+.+|+.+|+++|||||||||||++++++|++++.
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 4678999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred eEEEEcchhHHHhhhchhhHHHHHHHHHHHhc----CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc
Q 024249 73 TFIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 148 (270)
Q Consensus 73 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~----~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 148 (270)
.++.+.+.++..++.++.+..++.+|..|... .|+||||||+|.+++.+... .........+..++..++++.
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhcccc
Confidence 35567778888889999999999999988764 79999999999999877421 111223455678888888876
Q ss_pred CCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhcc-CCC---------CCCCCHHHHHHH----
Q 024249 149 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR-MNL---------MRGIDLKKIAEK---- 214 (270)
Q Consensus 149 ~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~-~~~---------~~~~~~~~la~~---- 214 (270)
...++.||+|||+++.+|++++|+||||.+|+++.|+.++|.+||+.++.. ... ..+.+...++..
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~ 409 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDH 409 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 667899999999999999999999999999999999999999999988754 222 111223333322
Q ss_pred -------------------------cCCCCHHHHHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHhh
Q 024249 215 -------------------------MNGASGAELKAVCTEAGMFALRE----RRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 215 -------------------------~~g~~~~dl~~l~~~a~~~a~~~----~~~~i~~~d~~~a~~~~~~ 256 (270)
++.+||++|+++|.+|...|+++ +...++.+|+..|+.+-..
T Consensus 410 ~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~ 480 (512)
T TIGR03689 410 LYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFR 480 (512)
T ss_pred HhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhc
Confidence 45689999999999999988876 3468999999999988765
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=9.8e-38 Score=294.82 Aligned_cols=248 Identities=43% Similarity=0.714 Sum_probs=225.6
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhh
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 87 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~ 87 (270)
..+|+++.|.+..++.+.+.+.. +.+++.+..++...+.+++|+||||||||+++++++++.+.+++.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 46789999999999999998887 67788888888888999999999999999999999999999999999999998888
Q ss_pred chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 88 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 88 ~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.....++..|..|....|+||||||+|.++..+... .++.+....+.+..++..++++..+.+++||++||+++.+|+
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~-~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG-LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC-CCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 9888899999999999999999999999999877532 123334556678888999998877789999999999999999
Q ss_pred hhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 024249 168 ALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDF 247 (270)
Q Consensus 168 ~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~ 247 (270)
+++|+|||++.+.++.|+.++|.+||+.++++..+..++++..+|..|.||||+||.++|++|+..|++++...++.+||
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~ 385 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEF 385 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 024249 248 EMAVAKVMKK 257 (270)
Q Consensus 248 ~~a~~~~~~~ 257 (270)
++|+.++...
T Consensus 386 ~~a~~~v~~g 395 (644)
T PRK10733 386 EKAKDKIMMG 395 (644)
T ss_pred HHHHHHHhcc
Confidence 9999988653
No 31
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-38 Score=283.29 Aligned_cols=240 Identities=45% Similarity=0.751 Sum_probs=217.3
Q ss_pred CCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhh
Q 024249 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 86 (270)
Q Consensus 7 ~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~ 86 (270)
+++. .+++|+..+...+.+.+..|+.++..+.++|+.+|.++|+|||||+|||.+++++|++.++.++.+++..+..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4555 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHhcC-CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 87 IGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 87 ~~~~~~~~~~~~~~a~~~~-p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.|+.++.++.+|+.|..++ |++++|||+|.+++++... +....+...+++..+++.....+++||++||+++.+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999987432 113444555555555555556789999999999999
Q ss_pred hhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 024249 166 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 245 (270)
Q Consensus 166 ~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 245 (270)
|++++| ||||.++++..|+..+|.+|++.+.++++...++++..+|..|+||+|+|+.++|.+|+..+.++ +.+
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~ 407 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLE 407 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHH
Confidence 999999 99999999999999999999999999999888899999999999999999999999999999887 778
Q ss_pred HHHHHHHHHhhhh
Q 024249 246 DFEMAVAKVMKKE 258 (270)
Q Consensus 246 d~~~a~~~~~~~~ 258 (270)
+|..|...+.++.
T Consensus 408 ~~~~A~~~i~psa 420 (693)
T KOG0730|consen 408 IFQEALMGIRPSA 420 (693)
T ss_pred HHHHHHhcCCchh
Confidence 8888888876644
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.5e-36 Score=292.06 Aligned_cols=249 Identities=50% Similarity=0.807 Sum_probs=218.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
..++++|++|+|++++++.+.+++..|+.+|+.|.++|+.++.+++|+||||||||++++++|++.+.+++.+++.++..
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS 250 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
.+.+..+..++.+|..|....|+||||||+|.+++.+... .+..+.. ....++..+++......++||++||.++.
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~---~~~~Ll~~ld~l~~~~~vivI~atn~~~~ 326 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKR---VVAQLLTLMDGLKGRGRVIVIGATNRPDA 326 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHH---HHHHHHHHhhccccCCCEEEEeecCChhh
Confidence 9999989999999999999999999999999999876431 2222223 33444455555445667899999999999
Q ss_pred chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Q 024249 165 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER------ 238 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~------ 238 (270)
+|++++++|||+..+.++.|+.++|.+||+.+.+......+.++..+++.++||+++|+..+++.|+..++++.
T Consensus 327 ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~ 406 (733)
T TIGR01243 327 LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKI 406 (733)
T ss_pred cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999888877778899999999999999999999999999887652
Q ss_pred -------------CCCCCHHHHHHHHHHHhhh
Q 024249 239 -------------RIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 239 -------------~~~i~~~d~~~a~~~~~~~ 257 (270)
...++.+||..|+..+.++
T Consensus 407 ~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 407 NFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred ccccccccchhcccccccHHHHHHHHhhcccc
Confidence 1357889999999988664
No 33
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-37 Score=269.37 Aligned_cols=259 Identities=36% Similarity=0.589 Sum_probs=227.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
+.-+++.|+|++|++..++.+.+++..|+.+++.|..+- ++.+++||.||||+|||+|+++||.+.+..++.+.++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 345779999999999999999999999999999998654 5678999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc--CCCCeEEEEEeCC
Q 024249 84 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE--ASNKIKVLMATNR 161 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~vi~tt~~ 161 (270)
++|+|+.++.++.+|.-|+..+|+|+|+||+|.++..|.+ +......+...+++-+.++.. .++++.||+|||.
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~----~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD----NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC----cccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 9999999999999999999999999999999999998842 333344455566666655533 3358999999999
Q ss_pred CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccC-CCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Q 024249 162 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM-NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER-- 238 (270)
Q Consensus 162 ~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~-~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~-- 238 (270)
++.+|.+++| ||.+.+++|.|+.+.|..+|+.++... ....+.|++.++..|+||+|+||.++|.+|++-..+..
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 999999999999999999999988776 33566889999999999999999999999997655432
Q ss_pred -----------CCCCCHHHHHHHHHHHhhhhhccchhhhhhh
Q 024249 239 -----------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 269 (270)
Q Consensus 239 -----------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~ 269 (270)
...++..||+.|++.+.+..+...++....|
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~ 419 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKW 419 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHH
Confidence 2568889999999999999999999888887
No 34
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=3.9e-36 Score=296.49 Aligned_cols=215 Identities=18% Similarity=0.253 Sum_probs=180.4
Q ss_pred cChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhh----------c--------------
Q 024249 33 KHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI----------G-------------- 88 (270)
Q Consensus 33 ~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~----------~-------------- 88 (270)
..+.....+|+.+|+||||+||||||||.|||++|++.++|++.+.++++...++ +
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 3455678899999999999999999999999999999999999999999886431 1
Q ss_pred -----------------hhh--HHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc-
Q 024249 89 -----------------EGS--RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE- 148 (270)
Q Consensus 89 -----------------~~~--~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~- 148 (270)
... ..++.+|+.|++.+||||+|||+|.++.+.. . ...+..++..|++..
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~---~ltL~qLLneLDg~~~ 1766 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------N---YLSLGLLVNSLSRDCE 1766 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------c---eehHHHHHHHhccccc
Confidence 111 2378899999999999999999999976421 1 112455666666542
Q ss_pred --CCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhh--ccCCCCC-CCCHHHHHHHcCCCCHHHH
Q 024249 149 --ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHS--RRMNLMR-GIDLKKIAEKMNGASGAEL 223 (270)
Q Consensus 149 --~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~--~~~~~~~-~~~~~~la~~~~g~~~~dl 223 (270)
...+++||||||+|+.+|+|++||||||+.|.++.|+..+|.+++..+. +...+.. .+|+..+|..|+||+||||
T Consensus 1767 ~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADL 1846 (2281)
T CHL00206 1767 RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDL 1846 (2281)
T ss_pred cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHH
Confidence 3468999999999999999999999999999999999999999988653 3444443 3689999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 024249 224 KAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 224 ~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 257 (270)
.++|.+|+..|++++...|+.++++.|+.++..-
T Consensus 1847 anLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1847 VALTNEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998764
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-36 Score=284.08 Aligned_cols=250 Identities=40% Similarity=0.678 Sum_probs=216.4
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-----eEEEEcchhH
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-----TFIRVSGSEL 82 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~-----~~i~i~~~~~ 82 (270)
.+.|++|||++..+++|++.+..|+..|+.|.+|++.+|+++|+|||||||||.+++++|..+.. .++.-++.+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 57899999999999999999999999999999999999999999999999999999999986643 4566678899
Q ss_pred HHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 83 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
.++|+|+.+.+++.+|+.|+...|+|+|+||||-|.+.|+. ..+..-......+|..|+++.....++||++||++
T Consensus 341 lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs----kqEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS----KQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc----hHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 99999999999999999999999999999999999988742 12222223445566666766677899999999999
Q ss_pred CCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC--
Q 024249 163 DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR-- 239 (270)
Q Consensus 163 ~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~-- 239 (270)
+.++++++|||||+++++|+.|+.++|.+|+..+.++... ....-+..+|+.+.||.|+||+++|.+|++.++++.-
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 9999999999999999999999999999999999887653 2334467899999999999999999999999988631
Q ss_pred --------------CCCCHHHHHHHHHHHhhhhhcc
Q 024249 240 --------------IHVTQEDFEMAVAKVMKKETEK 261 (270)
Q Consensus 240 --------------~~i~~~d~~~a~~~~~~~~~~~ 261 (270)
..+..+||-.|+.+..++...+
T Consensus 497 ~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 497 IYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred eecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 3477899999999998866553
No 36
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-35 Score=260.07 Aligned_cols=257 Identities=40% Similarity=0.636 Sum_probs=213.7
Q ss_pred CCCCccc--ccCcHHHHHHHHHH-hhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe-EEEEcchhH
Q 024249 7 PDSTYDM--IGGLDQQIKEIKEV-IELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-FIRVSGSEL 82 (270)
Q Consensus 7 ~~~~~~~--i~G~~~~~~~l~~~-l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~-~i~i~~~~~ 82 (270)
|+..|++ |||+++....|.+. .....--|+..+.+|+..-+++|||||||||||.+||.|..-++.. --.+++.++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 4556664 79999999888654 4445567899999999999999999999999999999999866542 235789999
Q ss_pred HHhhhchhhHHHHHHHHHHHhc--------CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeE
Q 024249 83 VQKYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 154 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~a~~~--------~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 154 (270)
.++|+|+.+.+++.+|+-|... .--||++||+|++|..|....++ ......++.++|..+++...-+++.
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~--TGVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS--TGVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC--CCccHHHHHHHHHhcccHHhhhcEE
Confidence 9999999999999999988542 12399999999999999653322 2233446677888888887788999
Q ss_pred EEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCC----CCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Q 024249 155 VLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEA 230 (270)
Q Consensus 155 vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~----~~~~~~~~~la~~~~g~~~~dl~~l~~~a 230 (270)
||+.||+.+.+|.+++|||||.-.+++..|++..|.+|++.|..++. +..++|+++||.+|..|||++|..+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987653 46789999999999999999999999999
Q ss_pred HHHHHHhc---------------CCCCCHHHHHHHHHHHhhhhhccchhh
Q 024249 231 GMFALRER---------------RIHVTQEDFEMAVAKVMKKETEKNMSL 265 (270)
Q Consensus 231 ~~~a~~~~---------------~~~i~~~d~~~a~~~~~~~~~~~~~~~ 265 (270)
.-.|+.+. ...++.+||..|+.++.|.=.-++.++
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l 501 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDL 501 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHH
Confidence 99888762 357899999999998876444444443
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=4.4e-32 Score=233.88 Aligned_cols=215 Identities=20% Similarity=0.257 Sum_probs=164.9
Q ss_pred CCcccc-cCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhh
Q 024249 9 STYDMI-GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 87 (270)
Q Consensus 9 ~~~~~i-~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~ 87 (270)
.+|+++ +|+.-...-+.+.+...- +.....+++.+|.+++||||||||||.+++++|++++++++.+++.++.+++.
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 466777 777766666655554422 22334478999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHh-----cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCC------------cCC
Q 024249 88 GEGSRMVRELFVMARE-----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------------EAS 150 (270)
Q Consensus 88 ~~~~~~~~~~~~~a~~-----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~------------~~~ 150 (270)
|+.++.++++|..|.. .+||||||||+|.+++.+... ......+.+...+++.+++. ...
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 9999999999999975 479999999999999987421 11111222234566555431 234
Q ss_pred CCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCC----CCHHHHHHH
Q 024249 151 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNG----ASGAELKAV 226 (270)
Q Consensus 151 ~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g----~~~~dl~~l 226 (270)
.++.||+|||+++.|+++++|+||||+.+ ..|+.++|.+|++.+++...+. ..|+..++..++| |.|+--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 67999999999999999999999999865 5899999999999999887553 5677788888766 445433334
Q ss_pred HHHHH
Q 024249 227 CTEAG 231 (270)
Q Consensus 227 ~~~a~ 231 (270)
..++.
T Consensus 344 yd~~v 348 (413)
T PLN00020 344 YDDEV 348 (413)
T ss_pred HHHHH
Confidence 44333
No 38
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.1e-24 Score=196.87 Aligned_cols=232 Identities=25% Similarity=0.265 Sum_probs=183.5
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----CCeEEEEcchhHHHhhh
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSELVQKYI 87 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----~~~~i~i~~~~~~~~~~ 87 (270)
.+++-+...+++..+....| +-.+..|+|.||+|||||.|+++++.+. .+++.+++|+.+.....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45666666666666655554 3456789999999999999999999864 46788999999988888
Q ss_pred chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcC-C-cCCCCeEEEEEeCCCCCc
Q 024249 88 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG-F-EASNKIKVLMATNRIDIL 165 (270)
Q Consensus 88 ~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~-~~~~~~~vi~tt~~~~~l 165 (270)
....+.++.+|..+.+++|+||+||++|.|++...+ .++.+......+..++.++-. + ..+..+.+|++.+....+
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~--e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl 554 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN--ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTL 554 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc--cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhc
Confidence 888889999999999999999999999999983321 233344444445555533211 1 233457899999999999
Q ss_pred hhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----cCC
Q 024249 166 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE----RRI 240 (270)
Q Consensus 166 ~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~----~~~ 240 (270)
++.+..+++|...+.++.|+..+|.+||+..+.+... ...-|++-++..|+||.+.|+..++.+|...|... +..
T Consensus 555 ~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k 634 (952)
T KOG0735|consen 555 NPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK 634 (952)
T ss_pred ChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999999988765432 22234556999999999999999999999998843 334
Q ss_pred CCCHHHHHHHHHHHhh
Q 024249 241 HVTQEDFEMAVAKVMK 256 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~ 256 (270)
.++.++|++++..+.|
T Consensus 635 lltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFVP 650 (952)
T ss_pred cchHHHHHHHHHhcCh
Confidence 8899999999999977
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.3e-24 Score=185.60 Aligned_cols=211 Identities=26% Similarity=0.315 Sum_probs=163.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~ 85 (270)
..+.+|+.|+--.+.|++|.+-+..+++.++.|+..|.+..+|+|||||||||||+++-|+|++++..++-+..+.+...
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n 274 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD 274 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc
Confidence 34589999999999999999999999999999999999999999999999999999999999999998888876654322
Q ss_pred hhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCC--CCCC-hHHHHHHHHHHHhhcCCcCCC--CeEEEEEeC
Q 024249 86 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS--GNGD-SEVQRTMLELLNQLDGFEASN--KIKVLMATN 160 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~--~~~~-~~~~~~l~~~l~~l~~~~~~~--~~~vi~tt~ 160 (270)
.. ++.++.. ....+||+|+|||.-+.-+..... .+.. ....-.+.-+|+.+++++... ..+||+|||
T Consensus 275 -----~d-Lr~LL~~--t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTN 346 (457)
T KOG0743|consen 275 -----SD-LRHLLLA--TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTN 346 (457)
T ss_pred -----HH-HHHHHHh--CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecC
Confidence 22 5554433 234589999999986543322111 1111 122335667888888887665 688999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCC--CCHHHHHHH
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNG--ASGAELKAV 226 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g--~~~~dl~~l 226 (270)
.++.+|||++||||+|..|+++.-+.++-..+++.++..-. .-.-+.++....+| .||+|+...
T Consensus 347 h~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 347 HKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred ChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999998876432 11224556555555 489998643
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.9e-24 Score=177.32 Aligned_cols=247 Identities=25% Similarity=0.315 Sum_probs=186.7
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcC-CCCCceEEEEcCCCchHHHHHHHHHHhc---------CCeEEEEcc
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLG-IAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSG 79 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---------~~~~i~i~~ 79 (270)
.|+.++=-.+.|+.+..+....++..+-..+-. +...+-+|||||||||||+|.|++|.++ .+..+++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 466666667788999998887765433322211 4556789999999999999999999743 467899999
Q ss_pred hhHHHhhhchhhHHHHHHHHHHHhc-----CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeE
Q 024249 80 SELVQKYIGEGSRMVRELFVMAREH-----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 154 (270)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~a~~~-----~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 154 (270)
..++++|+++.++.+..+|+..... .=..++|||++.|..+|....+.+..+...+++..+|.+++++....++.
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999887542 22368899999999888665566667778889999999999887778899
Q ss_pred EEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCC-------------C-----CCCCCHHHHHHH-c
Q 024249 155 VLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN-------------L-----MRGIDLKKIAEK-M 215 (270)
Q Consensus 155 vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~-------------~-----~~~~~~~~la~~-~ 215 (270)
+++|+|-.+.+|.++.. |-|-+.++++|+.+.+.+|++.....+. . ..+.....+++. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999988 8898999999999999999986543210 0 011112334443 4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhc
Q 024249 216 NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 260 (270)
Q Consensus 216 ~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~ 260 (270)
.|.||+-|..+=--|. |.--...+++.++|..|+....++...
T Consensus 378 ~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ea~~k~~~ 420 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLEAAKKLLS 420 (423)
T ss_pred cCCccchHhhhhHHHH--HhccCCCccChHHHHHHHHHHHHHHhh
Confidence 7999999986533222 111234689999999999988775443
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-22 Score=175.84 Aligned_cols=234 Identities=25% Similarity=0.376 Sum_probs=171.9
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhch
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 89 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~ 89 (270)
.+++|+-.....+.|.++-.. ..+.+.. -.+-++|++|||||||||++++.||.+.+..+-.+.+.++... -.+
T Consensus 353 pl~~ViL~psLe~Rie~lA~a-TaNTK~h----~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIA-TANTKKH----QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHH-hcccccc----cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chH
Confidence 467777777777777665544 2222211 1233569999999999999999999999999888888886532 123
Q ss_pred hhHHHHHHHHHHHhcCC-eEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 90 GSRMVRELFVMAREHAP-SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 90 ~~~~~~~~~~~a~~~~p-~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
....+..+|+.+..... -+|||||.|.+++.|+. .......+..+..+|-.-. ..++.+.++++||+|.++|.+
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHH
Confidence 45678999999987654 58999999999988853 3444455556666654332 356688899999999999999
Q ss_pred hcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-----------------------CCCC----HHHHHHHcCCCCHH
Q 024249 169 LLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-----------------------RGID----LKKIAEKMNGASGA 221 (270)
Q Consensus 169 l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-----------------------~~~~----~~~la~~~~g~~~~ 221 (270)
+-. |||..++||.|..++|..++..|+.++-.. .+.+ +.+.|..|+||||+
T Consensus 502 V~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 502 VND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 988 999999999999999999998776543210 1112 46789999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 222 ELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 222 dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
+|..|+..-...+.....+.++..-|++.+..-..
T Consensus 580 EiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 580 EIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQ 614 (630)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 99998875544455566778887777777765544
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=5.5e-22 Score=170.71 Aligned_cols=212 Identities=22% Similarity=0.317 Sum_probs=149.6
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCC---ceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchh
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP---KGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE 81 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~---~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~ 81 (270)
++++|++++|+++.+++.. +..++.....|+.++ .+++|+||||||||++|+++|..+ ..+++.++..+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 5899999999999999877 445677777887553 458999999999999999998753 23588999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
+...+.|........+|..| .+.||||||++.++..+.+ ..........+..++ +. ...++.||++++.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~m---e~--~~~~~~vI~ag~~ 170 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVM---EN--QRDDLVVIFAGYK 170 (287)
T ss_pred HHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCc---cchHHHHHHHHHHHH---hc--CCCCEEEEEeCCc
Confidence 99888888777777777765 3469999999998654321 111233333444444 32 2345667777653
Q ss_pred CC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH----H--cCCCC-HHHHHHHHH
Q 024249 162 ID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE----K--MNGAS-GAELKAVCT 228 (270)
Q Consensus 162 ~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~----~--~~g~~-~~dl~~l~~ 228 (270)
.. .+++.+.+ ||+..+.|++++.+++.+|++.++...... .+.....+.. . .+.|. +++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 21 22467777 999999999999999999999988764321 2212222222 2 13444 899999999
Q ss_pred HHHHHHHHh
Q 024249 229 EAGMFALRE 237 (270)
Q Consensus 229 ~a~~~a~~~ 237 (270)
+|......+
T Consensus 249 ~~~~~~~~r 257 (287)
T CHL00181 249 RARMRQANR 257 (287)
T ss_pred HHHHHHHHH
Confidence 988766544
No 43
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-22 Score=186.24 Aligned_cols=208 Identities=28% Similarity=0.470 Sum_probs=176.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCC
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~ 124 (270)
....+||+|+|||||||+++++|.+++.+++.++|.++.....+..+..+..+|.+|+...|+|||+-++|.|....
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~--- 506 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ--- 506 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC---
Confidence 44669999999999999999999999999999999999999888999999999999999999999999999998543
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCc-CCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC
Q 024249 125 GSGNGDSEVQRTMLELLNQLDGFE-ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM 203 (270)
Q Consensus 125 ~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~ 203 (270)
.++.+-.....+..++. .+.+. ...+++||++|++.+.+++.+++ .|-++|.++.|+++||.+||+++.......
T Consensus 507 -dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n 582 (953)
T KOG0736|consen 507 -DGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLN 582 (953)
T ss_pred -CCchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 33556666666666665 22222 34578999999999999999988 777889999999999999999999988888
Q ss_pred CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---c-----------------CCCCCHHHHHHHHHHHhhhhh
Q 024249 204 RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE---R-----------------RIHVTQEDFEMAVAKVMKKET 259 (270)
Q Consensus 204 ~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~---~-----------------~~~i~~~d~~~a~~~~~~~~~ 259 (270)
+++.++.++.+|.||+.+|+.+++.++...+..+ . ...++++||.+|+.++.+.-+
T Consensus 583 ~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs 658 (953)
T KOG0736|consen 583 QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFS 658 (953)
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998874443322 1 267999999999998876443
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.90 E-value=1.5e-22 Score=154.62 Aligned_cols=130 Identities=43% Similarity=0.705 Sum_probs=109.0
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcC-CeEEEEcCCCcccCcccCCCCC
Q 024249 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSARMESGSG 127 (270)
Q Consensus 49 ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~-p~il~lDeid~l~~~~~~~~~~ 127 (270)
++|+||||||||++++.+|+..+.+++.+++..+...+.+...+.+..+|..+.... |+||+|||+|.+++.. ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~----~~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS----QP 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC----ST
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc----cc
Confidence 689999999999999999999999999999999998888889999999999999887 9999999999998875 12
Q ss_pred CCChHHHHHHHHHHHhhcCCcCC-CCeEEEEEeCCCCCchhhhcCCCCcceEEEeCC
Q 024249 128 NGDSEVQRTMLELLNQLDGFEAS-NKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 183 (270)
Q Consensus 128 ~~~~~~~~~l~~~l~~l~~~~~~-~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~ 183 (270)
.........+..++..++..... .++.+|+|||+++.+++.+.+ +||+..+++|.
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 23344444555556666554433 469999999999999999998 89999999873
No 45
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=7.1e-22 Score=170.06 Aligned_cols=212 Identities=21% Similarity=0.317 Sum_probs=151.5
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCC---CceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchh
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ---PKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE 81 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~---~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~ 81 (270)
++++|++++|+++.+++.. +..++.+..+|+.. +.+++|+||||||||++|+++|..+ ..+++.+++.+
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3699999999999999888 66778888888764 4489999999999999999998743 23688999988
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
+...+.|.....+..+|..| .+.+|||||++.+.+.+.+ .......+..+.+.++. ...++.||++++.
T Consensus 101 l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~ 169 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMEN-----QRDDLVVILAGYK 169 (284)
T ss_pred HhHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCc
Confidence 88888887777777777766 3479999999998643211 11122333444444432 2346777777653
Q ss_pred C--CC---chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHc------CC-CCHHHHHHHHH
Q 024249 162 I--DI---LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKM------NG-ASGAELKAVCT 228 (270)
Q Consensus 162 ~--~~---l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~------~g-~~~~dl~~l~~ 228 (270)
. +. +++.+.+ ||...+.||+++.+++.+|++.++.+.... ...-...+.... +. -+++++.++++
T Consensus 170 ~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve 247 (284)
T TIGR02880 170 DRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAID 247 (284)
T ss_pred HHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 2 22 3577777 999999999999999999999998765321 111123333321 22 26899999999
Q ss_pred HHHHHHHHh
Q 024249 229 EAGMFALRE 237 (270)
Q Consensus 229 ~a~~~a~~~ 237 (270)
++......+
T Consensus 248 ~~~~~~~~r 256 (284)
T TIGR02880 248 RARLRQANR 256 (284)
T ss_pred HHHHHHHHH
Confidence 988766543
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=1.3e-21 Score=166.91 Aligned_cols=212 Identities=21% Similarity=0.277 Sum_probs=147.0
Q ss_pred cccccCcHHHHHHHHHHhhccccChHHHHhcCCCC---CceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcch
Q 024249 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ---PKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS 80 (270)
Q Consensus 11 ~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~---~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~ 80 (270)
+++++|++++|+++.+++..+... ......|... +.+++|+|||||||||+|+++|+.+ ...++.+++.
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999999999886443 3333455543 3568999999999999999999752 3468889999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.+.++++....++..|..+. +.||||||+|.|.... ........+..++..++. ....+.+|+++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~--~~~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-------EKDFGKEAIDTLVKGMED--NRNEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-------ccchHHHHHHHHHHHHhc--cCCCEEEEecCC
Confidence 9999999988888888888764 4699999999986321 111123344455665543 233455555543
Q ss_pred CCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHH-------c--CCCCHHHHHH
Q 024249 161 RID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEK-------M--NGASGAELKA 225 (270)
Q Consensus 161 ~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~-------~--~g~~~~dl~~ 225 (270)
..+ .+++++.+ ||...+.+|.++.+++.+|++.++..... .++.-+..+++. . ..-+++.+.+
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 221 25667777 89889999999999999999988765432 122123333322 1 1236788889
Q ss_pred HHHHHHHHHHHh
Q 024249 226 VCTEAGMFALRE 237 (270)
Q Consensus 226 l~~~a~~~a~~~ 237 (270)
+++.|......+
T Consensus 230 ~~e~a~~~~~~r 241 (261)
T TIGR02881 230 IIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHH
Confidence 988887766543
No 47
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.84 E-value=1.2e-19 Score=174.82 Aligned_cols=224 Identities=24% Similarity=0.321 Sum_probs=163.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeEE
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFI 75 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~i 75 (270)
.++..++.++|.++.+..+.+.+... ...+++|+||||||||++++.+|... +..++
T Consensus 176 ~r~~~l~~~igr~~ei~~~~~~L~~~-------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~ 242 (731)
T TIGR02639 176 AKNGKIDPLIGREDELERTIQVLCRR-------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIY 242 (731)
T ss_pred HhcCCCCcccCcHHHHHHHHHHHhcC-------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEE
Confidence 34567789999999999888777543 35678999999999999999999865 67788
Q ss_pred EEcchhHH--HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCe
Q 024249 76 RVSGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 153 (270)
Q Consensus 76 ~i~~~~~~--~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 153 (270)
.++...+. ..+.|+.++.++.+|..+....|.||||||+|.|+++... .+.+......+...+ .++.+
T Consensus 243 ~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~~~~~~~~~~L~~~l-------~~g~i 312 (731)
T TIGR02639 243 SLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT---SGGSMDASNLLKPAL-------SSGKL 312 (731)
T ss_pred EecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC---CCccHHHHHHHHHHH-------hCCCe
Confidence 99888876 4678899999999999998888999999999999876421 111122233333322 34578
Q ss_pred EEEEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-----CCCCCHHHHHHHcCCCCHH--
Q 024249 154 KVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-----MRGIDLKKIAEKMNGASGA-- 221 (270)
Q Consensus 154 ~vi~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-----~~~~~~~~la~~~~g~~~~-- 221 (270)
.+|++|+..+ ..|+++.| ||. .+.++.|+.+++.+|++.....+.. ..+..+..++..+..|-+.
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~ 389 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRF 389 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccccc
Confidence 8999998633 46889988 896 7999999999999999976554321 1233356677777666443
Q ss_pred ---HHHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHh
Q 024249 222 ---ELKAVCTEAGMFALRE----RRIHVTQEDFEMAVAKVM 255 (270)
Q Consensus 222 ---dl~~l~~~a~~~a~~~----~~~~i~~~d~~~a~~~~~ 255 (270)
---.++.+|+..+... ....++.+|+..++..+.
T Consensus 390 ~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 390 LPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred CCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 2345666666433211 234699999999999874
No 48
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.9e-19 Score=163.60 Aligned_cols=222 Identities=48% Similarity=0.737 Sum_probs=192.5
Q ss_pred ccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEE
Q 024249 30 LPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSII 109 (270)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il 109 (270)
.++.+++.+..+++.++.+++++||+|+|||+++++++.. +.....+++.....++.+..+......|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4577899999999999999999999999999999999998 665588888999999999999999999999999999999
Q ss_pred EEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHH
Q 024249 110 FMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 189 (270)
Q Consensus 110 ~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r 189 (270)
++||+|.+.+.+.. ...........+++..+++..... +.++..|+.+..+++++.++++|+..+.++.|+...+
T Consensus 81 ~~d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (494)
T COG0464 81 FIDEIDALAPKRSS----DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155 (494)
T ss_pred eechhhhcccCccc----cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHH
Confidence 99999999988754 222233444555555555555344 8888899999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHhhh
Q 024249 190 LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER------RIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 190 ~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~------~~~i~~~d~~~a~~~~~~~ 257 (270)
.+++..+........+.++..++..+.||+++|+..++..+...+.++. ...++.+|+..++.++.++
T Consensus 156 ~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 156 LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 9999999888777778899999999999999999999999998888774 3568899999999998774
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=2e-19 Score=146.31 Aligned_cols=197 Identities=23% Similarity=0.318 Sum_probs=131.1
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
+.++|.+++|++|+++.++.+.-++....... ....+++||||||+||||||+.||++.+..+..+++..+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 35788999999999999999988887653322 2346799999999999999999999999999888775432
Q ss_pred HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc-----CCc--------CC
Q 024249 84 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD-----GFE--------AS 150 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~--------~~ 150 (270)
. . ..+..++... ....||||||++.+ +...+..++..++... +.. .-
T Consensus 88 k--~----~dl~~il~~l--~~~~ILFIDEIHRl------------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 88 K--A----GDLAAILTNL--KEGDILFIDEIHRL------------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp S--C----HHHHHHHHT----TT-EEEECTCCC--------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred h--H----HHHHHHHHhc--CCCcEEEEechhhc------------cHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 1 1 1222233322 34579999999875 3455667777776532 111 01
Q ss_pred CCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHHHcCCCCHHHHHHHHHH
Q 024249 151 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLKKIAEKMNGASGAELKAVCTE 229 (270)
Q Consensus 151 ~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~~l~~~ 229 (270)
++.++|++|.+...+...++. ||.....+..++.++-.+|++.....+...-+ .-..++|.++.| +|+-...++++
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 357899999999999999988 99988889999999999999987766654322 225678888888 88888888876
Q ss_pred HH
Q 024249 230 AG 231 (270)
Q Consensus 230 a~ 231 (270)
+.
T Consensus 225 vr 226 (233)
T PF05496_consen 225 VR 226 (233)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 50
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.83 E-value=1.2e-18 Score=153.44 Aligned_cols=220 Identities=21% Similarity=0.244 Sum_probs=158.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
.+++|.+|++++|.++.++.+..++...... -.++.+++|+||||+|||++++++|++.+..+..+.+..+.
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 4678889999999999999999888653221 13467899999999999999999999998887766654322
Q ss_pred HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc------C-Cc------CC
Q 024249 84 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD------G-FE------AS 150 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~------~-~~------~~ 150 (270)
. ...+..++.. ...+.+|||||+|.+.. .....+...++... . .. .-
T Consensus 89 ~------~~~l~~~l~~--l~~~~vl~IDEi~~l~~------------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 89 K------PGDLAAILTN--LEEGDVLFIDEIHRLSP------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred C------hHHHHHHHHh--cccCCEEEEecHhhcch------------HHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 1 1123333332 24578999999998732 12223344443321 0 00 11
Q ss_pred CCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHH
Q 024249 151 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTE 229 (270)
Q Consensus 151 ~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~ 229 (270)
.+.++|++|+....+++.+.+ ||...+.+++|+.+++.+|++......... .+.-+..++..+.| +++.+..++++
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~ 225 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRR 225 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHH
Confidence 346789999999999998877 888889999999999999999887655432 22236788888887 56888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHH
Q 024249 230 AGMFALRERRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 230 a~~~a~~~~~~~i~~~d~~~a~~~~ 254 (270)
+...+...+...++.+++..++..+
T Consensus 226 ~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 226 VRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 8777766666689999999998664
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=99.82 E-value=1.2e-18 Score=160.70 Aligned_cols=211 Identities=28% Similarity=0.363 Sum_probs=144.9
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
+|+|+++|.++++|+|.++.++.+..++..... | .++..++|+||||+||||+++++|++.+..++.++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 599999999999999999999999999976532 1 2367899999999999999999999999999999887
Q ss_pred hHHHhhhchhhHHHHHHHHHHHh------cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeE
Q 024249 81 ELVQKYIGEGSRMVRELFVMARE------HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 154 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~------~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 154 (270)
+.... ..+..++..+.. ..+.+|+|||+|.+... .+......+..++. ..+..
T Consensus 74 d~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~--------~d~~~~~aL~~~l~-------~~~~~ 132 (482)
T PRK04195 74 DQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN--------EDRGGARAILELIK-------KAKQP 132 (482)
T ss_pred ccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc--------cchhHHHHHHHHHH-------cCCCC
Confidence 64321 122222222221 25789999999987531 22233444445443 22455
Q ss_pred EEEEeCCCCCchh-hhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024249 155 VLMATNRIDILDQ-ALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGM 232 (270)
Q Consensus 155 vi~tt~~~~~l~~-~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 232 (270)
+|+++|++..+.. .+++ ....+.|++|+..+...+++..+..... ..+..+..|++.+.| |+..++.....
T Consensus 133 iIli~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 133 IILTANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred EEEeccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 7888898887776 4544 3457999999999999999888765443 223336677777654 55555544433
Q ss_pred HHHHhcCCCCCHHHHHHH
Q 024249 233 FALRERRIHVTQEDFEMA 250 (270)
Q Consensus 233 ~a~~~~~~~i~~~d~~~a 250 (270)
.+ .+...++.+++...
T Consensus 206 ~a--~~~~~it~~~v~~~ 221 (482)
T PRK04195 206 IA--EGYGKLTLEDVKTL 221 (482)
T ss_pred Hh--cCCCCCcHHHHHHh
Confidence 22 23345666666543
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.81 E-value=2.7e-18 Score=149.78 Aligned_cols=214 Identities=18% Similarity=0.217 Sum_probs=150.2
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhch
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 89 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~ 89 (270)
+|++++|.++.++.|..++......+ ..+.+++|+||||+|||++++++|++.+..+..+.+..... .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~-- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--P-- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--c--
Confidence 68999999999999999886543221 24567999999999999999999999888776665443211 1
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcC-------C------cCCCCeEEE
Q 024249 90 GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG-------F------EASNKIKVL 156 (270)
Q Consensus 90 ~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-------~------~~~~~~~vi 156 (270)
..+...+.. ...+.+|||||++.+.+ .....+..+++.... . ....+.++|
T Consensus 70 --~~l~~~l~~--~~~~~vl~iDEi~~l~~------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 70 --GDLAAILTN--LEEGDVLFIDEIHRLSP------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred --hhHHHHHHh--cccCCEEEEehHhhhCH------------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 112222222 23567999999988642 123334444433210 0 011347788
Q ss_pred EEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 024249 157 MATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFAL 235 (270)
Q Consensus 157 ~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~ 235 (270)
++|+.+..+++.+.+ ||...+.+++|+.++..++++......... .+..+..++..+.| .++.+..++..+...|.
T Consensus 134 ~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~ 210 (305)
T TIGR00635 134 GATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQ 210 (305)
T ss_pred EecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHH
Confidence 999999999998877 888889999999999999999876643321 22335678888888 45777888888777765
Q ss_pred HhcCCCCCHHHHHHHHHHH
Q 024249 236 RERRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 236 ~~~~~~i~~~d~~~a~~~~ 254 (270)
......++.+++..++..+
T Consensus 211 ~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 211 VRGQKIINRDIALKALEML 229 (305)
T ss_pred HcCCCCcCHHHHHHHHHHh
Confidence 5555678999999988873
No 53
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.81 E-value=1.4e-18 Score=168.37 Aligned_cols=167 Identities=29% Similarity=0.450 Sum_probs=122.8
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH--------
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV-------- 83 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~-------- 83 (270)
+++.|+++.++.+.+++....... -..+..++|+||||||||+++++||+.++.+++.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 468999999999999888653221 22455799999999999999999999999999988654321
Q ss_pred -HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhh--cCCc--------CCCC
Q 024249 84 -QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL--DGFE--------ASNK 152 (270)
Q Consensus 84 -~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l--~~~~--------~~~~ 152 (270)
..+.+.....+.+.|..+....| ||+|||+|.+.+.. ..++ ...+.++++.. ..+. ...+
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~------~~~~--~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF------RGDP--ASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc------CCCH--HHHHHHhcCHHhcCccccccCCceeccCC
Confidence 13455555566777777766666 89999999987532 1122 33455555421 0010 1136
Q ss_pred eEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 024249 153 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHS 197 (270)
Q Consensus 153 ~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~ 197 (270)
+++|+|||..+.+++++++ ||. .++++.|+.+++.+|++.++
T Consensus 464 v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 8889999999999999998 884 78999999999999998765
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.80 E-value=1.8e-18 Score=165.37 Aligned_cols=222 Identities=26% Similarity=0.368 Sum_probs=158.4
Q ss_pred CCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeEEEEc
Q 024249 9 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVS 78 (270)
Q Consensus 9 ~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~i~i~ 78 (270)
-.++.+.|.++.+..+.+.+... .+..++|+||||||||++++.++... ++.++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 34567889998888888877662 34667999999999999999999742 45666666
Q ss_pred chhHH--HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEE
Q 024249 79 GSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVL 156 (270)
Q Consensus 79 ~~~~~--~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi 156 (270)
...+. ..+.|+.+..++.+|..+....+.||||||+|.|++.+.. .+......+.+..++ .+..+.+|
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~---~~g~~d~~nlLkp~L-------~~g~i~vI 319 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---SGGQVDAANLIKPLL-------SSGKIRVI 319 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC---CCcHHHHHHHHHHHH-------hCCCeEEE
Confidence 55554 3567888889999999888888899999999999876421 111222223333333 34578899
Q ss_pred EEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHH-----HHHHHcC-----CCCHH
Q 024249 157 MATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLK-----KIAEKMN-----GASGA 221 (270)
Q Consensus 157 ~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~-----~la~~~~-----g~~~~ 221 (270)
++|+..+ ..|+++.| ||. .|.++.|+.+++.+||+.+...+....++++. ..+..+. .+.|.
T Consensus 320 gATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred ecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChH
Confidence 9998754 46889988 995 79999999999999999887666554445442 2233333 34566
Q ss_pred HHHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHhh
Q 024249 222 ELKAVCTEAGMFAL----RERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 222 dl~~l~~~a~~~a~----~~~~~~i~~~d~~~a~~~~~~ 256 (270)
....++.+|+...- ......++.+|+..++.++..
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhC
Confidence 77788888875431 123346888999998887654
No 55
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.79 E-value=4.1e-17 Score=145.82 Aligned_cols=225 Identities=25% Similarity=0.323 Sum_probs=147.3
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC---------CeEEEEc
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVS 78 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~---------~~~i~i~ 78 (270)
++.++++.|.++++++|..++...+.. ..+..++|+||||||||++++.++.++. ..+++++
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 455678999999999999998865331 3456799999999999999999987532 5678888
Q ss_pred chhHHH----------hhh--c--------hhhHHHHHHHHHHH-hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHH
Q 024249 79 GSELVQ----------KYI--G--------EGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 137 (270)
Q Consensus 79 ~~~~~~----------~~~--~--------~~~~~~~~~~~~a~-~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l 137 (270)
|....+ ... + ...+.+..++.... ...+.||+|||+|.+.... + ..+
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~----~~L 149 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------D----DLL 149 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------c----HHH
Confidence 754211 110 0 01122333343332 3457799999999986211 1 123
Q ss_pred HHHHHhhcC-CcCCCCeEEEEEeCCCCC---chhhhcCCCCcc-eEEEeCCCCHHHHHHHHHHhhccCC---CCCCCCHH
Q 024249 138 LELLNQLDG-FEASNKIKVLMATNRIDI---LDQALLRPGRID-RKIEFPNPNEESRLDILKIHSRRMN---LMRGIDLK 209 (270)
Q Consensus 138 ~~~l~~l~~-~~~~~~~~vi~tt~~~~~---l~~~l~r~~r~~-~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~ 209 (270)
..++...+. .....++.+|+++|+++. +++.+.+ ||. ..+.+++++.++..+|++..+.... ...+.-+.
T Consensus 150 ~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~ 227 (365)
T TIGR02928 150 YQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIP 227 (365)
T ss_pred HhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHH
Confidence 344332111 112246889999998864 5555555 553 6799999999999999998765211 11111122
Q ss_pred H---HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 210 K---IAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 210 ~---la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
. ++..+.| ..+....+|+.|...|..++...|+.+|++.|+..+..
T Consensus 228 ~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 228 LCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK 276 (365)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 3 3444456 45555678899999898888889999999999888743
No 56
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.77 E-value=3.5e-17 Score=143.47 Aligned_cols=162 Identities=23% Similarity=0.325 Sum_probs=117.7
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
+|+|+++|.++++++|.++.++.+..++... ..+..++|+||+|+|||+++++++++.+.+++.+++.
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 5899999999999999999999999888631 2355677799999999999999999988888888887
Q ss_pred hHHHhhhchhhHHHHHHHHHH-HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEe
Q 024249 81 ELVQKYIGEGSRMVRELFVMA-REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMAT 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a-~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt 159 (270)
+ . . .......+....... ....+.+|+|||+|.+. .......+..+++.. ..+..+|++|
T Consensus 78 ~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~~L~~~le~~-----~~~~~~Ilt~ 138 (316)
T PHA02544 78 D-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG-----------LADAQRHLRSFMEAY-----SKNCSFIITA 138 (316)
T ss_pred c-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc-----------CHHHHHHHHHHHHhc-----CCCceEEEEc
Confidence 6 1 1 221112222222111 11357899999998752 122334455555543 2456788999
Q ss_pred CCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHh
Q 024249 160 NRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH 196 (270)
Q Consensus 160 ~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~ 196 (270)
|.++.+.+.+.+ |+ ..+.++.|+.+++.++++.+
T Consensus 139 n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 139 NNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred CChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 999999999888 66 36899999999998887654
No 57
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=2.9e-17 Score=136.56 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=163.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
.++|..|++.+|.++.+++|.-+|.....+.+ ...++||+||||.||||||+.||.+.+..+-..++.-+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 35688999999999999999999988755433 4578999999999999999999999998877666554432
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc-------CCc------CCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD-------GFE------ASN 151 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~-------~~~------~~~ 151 (270)
+++ +-.++.. -...+|+||||++.+.+. ..+.++..++.+. +.. .-.
T Consensus 91 --~gD----laaiLt~--Le~~DVLFIDEIHrl~~~------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 --PGD----LAAILTN--LEEGDVLFIDEIHRLSPA------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred --hhh----HHHHHhc--CCcCCeEEEehhhhcChh------------HHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 111 2222222 123479999999987543 3445566665431 110 123
Q ss_pred CeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCC-CCCHHHHHHHcCCCCHHHHHHHHHHH
Q 024249 152 KIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMR-GIDLKKIAEKMNGASGAELKAVCTEA 230 (270)
Q Consensus 152 ~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~a 230 (270)
+.+.|++|.+...+...++. ||+....+..++.++..+|++.....+...- +....++|.++.| +|+=-..++++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 67899999999999999988 9999999999999999999998877665532 2335678999988 888888999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHH
Q 024249 231 GMFALRERRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 231 ~~~a~~~~~~~i~~~d~~~a~~~~ 254 (270)
..+|.-++...|+.+--..|+...
T Consensus 228 RDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 228 RDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHh
Confidence 999887777777776666666554
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.5e-17 Score=148.74 Aligned_cols=205 Identities=19% Similarity=0.273 Sum_probs=139.6
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe--------
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 73 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~-------- 73 (270)
+.++++|.+|++++|.+..++.|...+... ..+..++|+||+||||||+|+++|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 457889999999999999999998888753 234568999999999999999999977652
Q ss_pred ----------------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 74 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 74 ----------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
++.+++.. ..+...++++...+. .....|+||||+|.+. ...
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A 137 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQS 137 (484)
T ss_pred CCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHH
Confidence 22222211 111223444444332 3456799999998762 222
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHH
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIA 212 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la 212 (270)
+..+|..++. ....+.+|++|+.+..+.+.+++ |+ ..+.|..++.++-.+.++..+..... ..+..+..|+
T Consensus 138 ---~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia 209 (484)
T PRK14956 138 ---FNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA 209 (484)
T ss_pred ---HHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344555532 23577888889889999998887 54 35788888888888888877665433 1333467788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 024249 213 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 249 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~ 249 (270)
+.++| +.+|.-.+++++...+ ...++.+++.+
T Consensus 210 ~~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~ 241 (484)
T PRK14956 210 KKGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRK 241 (484)
T ss_pred HHcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHH
Confidence 88887 7888878887655322 22466666544
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.77 E-value=9.2e-17 Score=141.91 Aligned_cols=214 Identities=19% Similarity=0.246 Sum_probs=138.0
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-----CeEE
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFI 75 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-----~~~i 75 (270)
+|+++++|.+|++++|.+..++.+.+++... ...+++|+|||||||||++++++++.. .+++
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~ 70 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT 70 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence 6999999999999999999999999887652 123689999999999999999998753 3467
Q ss_pred EEcchhHHHhhh-------------ch-------hhHHHHHHHHHHHh-----cCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 76 RVSGSELVQKYI-------------GE-------GSRMVRELFVMARE-----HAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 76 ~i~~~~~~~~~~-------------~~-------~~~~~~~~~~~a~~-----~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
++++.++..... +. ....++.++..... ..+.+|+|||+|.+.
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~------------ 138 (337)
T PRK12402 71 EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR------------ 138 (337)
T ss_pred EechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC------------
Confidence 777766532110 00 11223333333222 235699999988752
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHH
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLK 209 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~ 209 (270)
......+..+++.. .....+|++++.+..+.+.+.+ |+ ..+++++|+.++...+++..++..... .+..+.
T Consensus 139 ~~~~~~L~~~le~~-----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 139 EDAQQALRRIMEQY-----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHHHHHHHhc-----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 22344455555543 2234566677666666666766 43 468899999999999998877654432 333456
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 024249 210 KIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAK 253 (270)
Q Consensus 210 ~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 253 (270)
.++..+.| +.+.+...++ ..+ . ....|+.+|+..++..
T Consensus 211 ~l~~~~~g-dlr~l~~~l~---~~~-~-~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 211 LIAYYAGG-DLRKAILTLQ---TAA-L-AAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHcCC-CHHHHHHHHH---HHH-H-cCCCCCHHHHHHHhCC
Confidence 67776633 4444444333 333 2 2236888888776543
No 60
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.77 E-value=1.4e-17 Score=154.69 Aligned_cols=221 Identities=23% Similarity=0.316 Sum_probs=150.3
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------C
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------D 71 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~ 71 (270)
+.|++++.+|+++.|.+..++.+...+.. ..+..++|+||||||||++|+++.... +
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 35788999999999999999988866433 235679999999999999999997531 3
Q ss_pred CeEEEEcchhH-------HHhhhchhhHHH---HHHHH----------HHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 72 CTFIRVSGSEL-------VQKYIGEGSRMV---RELFV----------MAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 72 ~~~i~i~~~~~-------~~~~~~~~~~~~---~~~~~----------~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.+++.++|... ....++....-+ ...|. ........+|||||++.+ ++
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L------------~~ 189 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL------------HP 189 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC------------CH
Confidence 67888887631 111111000000 00000 011223469999999875 34
Q ss_pred HHHHHHHHHHHhhc---------CC--------------cCCCC-eEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHH
Q 024249 132 EVQRTMLELLNQLD---------GF--------------EASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEE 187 (270)
Q Consensus 132 ~~~~~l~~~l~~l~---------~~--------------~~~~~-~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~ 187 (270)
..+..+...++.-. +. ..... ..|.+||++++.+++++++ |+ ..+.+++++.+
T Consensus 190 ~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~e 266 (531)
T TIGR02902 190 VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDE 266 (531)
T ss_pred HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHH
Confidence 45666666665411 00 00112 3345567789999999988 65 46889999999
Q ss_pred HHHHHHHHhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 188 SRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 188 ~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
+..+|++..+++.... ++.-++.++..+. +++++.++++.|+..|..+++..|+.+|++.++.
T Consensus 267 ei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 267 EIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 9999999988765432 2222455565543 7899999999999988887778999999999986
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.8e-17 Score=153.31 Aligned_cols=191 Identities=17% Similarity=0.283 Sum_probs=134.3
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 73 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------- 73 (270)
.+++++.+|++|+|.+..++.|.+.+..- ..+..+||+||+|+||||+++.+|+.++|.
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 47899999999999999999999988763 235678999999999999999999987661
Q ss_pred --------------------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 74 --------------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 74 --------------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
+++++..+ ......+++++..+. .....|+||||+|.+.
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls----------- 137 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT----------- 137 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------
Confidence 22222211 112234555555543 3445799999998862
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCH
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDL 208 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~ 208 (270)
.. .+..+|+.|+. ...++.+|++|++++.+.+.+++ |+ ..+.|..++.++..+.++..+......-+ ..+
T Consensus 138 -~~---AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL 208 (700)
T PRK12323 138 -NH---AFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNAL 208 (700)
T ss_pred -HH---HHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHH
Confidence 12 23455666642 34567889999999999988877 44 45789999999888888876654332211 225
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH
Q 024249 209 KKIAEKMNGASGAELKAVCTEAGM 232 (270)
Q Consensus 209 ~~la~~~~g~~~~dl~~l~~~a~~ 232 (270)
..|+..+.| +.++..+++.++..
T Consensus 209 ~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 209 RLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHH
Confidence 667888777 77887788776553
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=4.1e-17 Score=145.44 Aligned_cols=207 Identities=20% Similarity=0.268 Sum_probs=140.6
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 73 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------- 73 (270)
.++++|.+|++|+|++..++.+...+... ..+..++|+||+|+||||+++++|+...+.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 47889999999999999999998888652 235668999999999999999999876542
Q ss_pred ---------------EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 74 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 74 ---------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
++.+++.. ......++.++..+.. ....|++|||+|.+. ....
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~ 136 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSF 136 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHH
Confidence 12222110 0122334555544321 234699999988752 1222
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~ 213 (270)
+ .++..++. ....+.+|++|++++.+.+.+.+ |+ ..+++++|+.++..++++..++.... ..+..+..++.
T Consensus 137 n---aLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~ 208 (363)
T PRK14961 137 N---ALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAY 208 (363)
T ss_pred H---HHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3 34444432 23466788888888888888776 44 56899999999999999887665442 22334566788
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
.+.| +.+++..+++.+... +...++.+++.+++.
T Consensus 209 ~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 209 HAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8776 788888888776533 345677887776553
No 63
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.76 E-value=1.5e-16 Score=143.67 Aligned_cols=226 Identities=21% Similarity=0.297 Sum_probs=148.7
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEEEEcchhH
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSEL 82 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~i~~~~~ 82 (270)
+..++.+.|.++++++|...+...+.. ..+..++|+||||+|||++++.++++. +..+++++|...
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 345578999999999999998764331 245668999999999999999999754 567888887532
Q ss_pred H----------Hhhhc--------hhhHHHHHHHHHHH-hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHh
Q 024249 83 V----------QKYIG--------EGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 143 (270)
Q Consensus 83 ~----------~~~~~--------~~~~~~~~~~~~a~-~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 143 (270)
. ....+ .....+..+..... ...+.||+|||+|.+.... .. ..+..++..
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~--------~~---~~l~~l~~~ 165 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE--------GN---DVLYSLLRA 165 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC--------Cc---hHHHHHHHh
Confidence 1 11111 01112222222222 2356899999999986211 11 234444443
Q ss_pred hcCCcCCCCeEEEEEeCCCCC---chhhhcCCCCc-ceEEEeCCCCHHHHHHHHHHhhccCC---CCCCCCHHHHHHHcC
Q 024249 144 LDGFEASNKIKVLMATNRIDI---LDQALLRPGRI-DRKIEFPNPNEESRLDILKIHSRRMN---LMRGIDLKKIAEKMN 216 (270)
Q Consensus 144 l~~~~~~~~~~vi~tt~~~~~---l~~~l~r~~r~-~~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~~la~~~~ 216 (270)
+... ...++.+|+++|+.+. +++.+.+ |+ ...+.+++++.++..+|++..+.... ...+..+..+++.+.
T Consensus 166 ~~~~-~~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 242 (394)
T PRK00411 166 HEEY-PGARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTA 242 (394)
T ss_pred hhcc-CCCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHH
Confidence 3322 2236889999988653 4444444 44 35689999999999999988765321 112222456666664
Q ss_pred CC--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 217 GA--SGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 217 g~--~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
+. ..+.+..+|..|...|..++...|+.+|+..|+..+..
T Consensus 243 ~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 243 REHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 32 34555688899998898888889999999999998743
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=3e-17 Score=149.94 Aligned_cols=207 Identities=21% Similarity=0.317 Sum_probs=138.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC----------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---------- 72 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~---------- 72 (270)
-++++|.+|++++|.+..++.|...+... ..+..++|+|||||||||+|+++|+.+++
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 36789999999999999988888877653 24566899999999999999999987654
Q ss_pred --------------eEEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 73 --------------TFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 73 --------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
.++.+++.. ..+...++.+...+. .....|++|||+|.+.. ...
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------------~a~ 134 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------------EAF 134 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH------------HHH
Confidence 233443321 111223444444433 23457999999987621 122
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~ 213 (270)
..++..++. ....+++|++|+++..+++.+.+ |+ ..+.+.+++.++...+++..+..... ..+..+..|+.
T Consensus 135 ---~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~ 206 (472)
T PRK14962 135 ---NALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK 206 (472)
T ss_pred ---HHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 334444432 23456777777788889998887 55 47899999999999988887654332 22333677888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
.+.| ..+++.+.++.+...+ . ..|+.+++..++.
T Consensus 207 ~s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 207 RASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred HhCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 7765 5566666666544332 2 2488888877664
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=8.2e-17 Score=150.87 Aligned_cols=191 Identities=16% Similarity=0.251 Sum_probs=134.2
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 73 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------- 73 (270)
.+|+++.+|++|+|.+..++.|..++..- ..+..+||+||+|+||||+++++++.++|.
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 57899999999999999999999887752 235668999999999999999999977652
Q ss_pred ---------------EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 74 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 74 ---------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
+++++..+ ......++.++..+.. ....|+||||+|.+. ....
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~ 136 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAF 136 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHH
Confidence 23332221 1122345555555432 345799999998762 2233
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~ 213 (270)
+.++..|++ ....+.+|++|++++.+.+.+++ |+ ..+.|..++.++-.+.|+..+...... .+..+..|+.
T Consensus 137 NALLKtLEE-----PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 137 NAMLKTLEE-----PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred HHHHHHHHh-----cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444433 23478899999999999888877 54 568899999999888888876554332 2334677888
Q ss_pred HcCCCCHHHHHHHHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAGM 232 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~~ 232 (270)
.+.| +.+|..+++.++..
T Consensus 209 ~A~G-smRdALsLLdQAia 226 (830)
T PRK07003 209 AAQG-SMRDALSLTDQAIA 226 (830)
T ss_pred HcCC-CHHHHHHHHHHHHH
Confidence 8888 56777677666653
No 66
>PLN03025 replication factor C subunit; Provisional
Probab=99.76 E-value=1.2e-16 Score=140.24 Aligned_cols=204 Identities=22% Similarity=0.216 Sum_probs=134.1
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-----eEE
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-----TFI 75 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~-----~~i 75 (270)
.|+|+++|.+++++.|.++.++.|..++... ...+++|+|||||||||+++++|++..+ .++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 4899999999999999999999988876642 2235899999999999999999987632 355
Q ss_pred EEcchhHHHhhhchhhHHHHHHHHH-HH------hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc
Q 024249 76 RVSGSELVQKYIGEGSRMVRELFVM-AR------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 148 (270)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~~~-a~------~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 148 (270)
.++.++..+. ..++..+.. +. ...+.|++|||+|.+. ...+..+...++..
T Consensus 69 eln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt------------~~aq~aL~~~lE~~---- 126 (319)
T PLN03025 69 ELNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT------------SGAQQALRRTMEIY---- 126 (319)
T ss_pred eecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC------------HHHHHHHHHHHhcc----
Confidence 6665543211 122222221 11 1346799999999863 22345555555433
Q ss_pred CCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHH
Q 024249 149 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVC 227 (270)
Q Consensus 149 ~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~ 227 (270)
.....+|++||....+.+.+++ |. ..+.|++|+.++....++..++.... ..+..+..++..+.| ..+.+.+.+
T Consensus 127 -~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~L 201 (319)
T PLN03025 127 -SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNL 201 (319)
T ss_pred -cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 2345577888888888888877 43 46899999999999999887765433 233346677777655 445555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHH
Q 024249 228 TEAGMFALRERRIHVTQEDFEM 249 (270)
Q Consensus 228 ~~a~~~a~~~~~~~i~~~d~~~ 249 (270)
+.+. . +...++.+++..
T Consensus 202 q~~~---~--~~~~i~~~~v~~ 218 (319)
T PLN03025 202 QATH---S--GFGFVNQENVFK 218 (319)
T ss_pred HHHH---h--cCCCCCHHHHHH
Confidence 5221 1 223466666543
No 67
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.76 E-value=1.1e-16 Score=146.62 Aligned_cols=192 Identities=19% Similarity=0.297 Sum_probs=129.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc-----CCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcc
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 121 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~ 121 (270)
..++|+||+|+|||+|+++++.+. +..++++++.++...............|.... ..+++|+|||++.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~- 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK- 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC-
Confidence 568999999999999999999864 56788999988766544433221122232222 25789999999987432
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC---chhhhcCCCCcc--eEEEeCCCCHHHHHHHHHHh
Q 024249 122 MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI---LDQALLRPGRID--RKIEFPNPNEESRLDILKIH 196 (270)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~---l~~~l~r~~r~~--~~i~~~~p~~~~r~~il~~~ 196 (270)
...+..+..+++.+. .++..+||.++..+.. +++.+.+ ||. ..+++.+|+.++|.+|++..
T Consensus 227 ---------~~~~~~l~~~~n~l~---~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 227 ---------ERTQEEFFHTFNALH---EAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred ---------HHHHHHHHHHHHHHH---HCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHH
Confidence 224455666666552 2233344444444444 5566766 664 57899999999999999988
Q ss_pred hccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 197 SRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 197 ~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
+..... .++.-++.||....| +.+++..++......+...+ ..++.+.++.++..+.+
T Consensus 293 ~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 293 AEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTG-KPITLELAKEALKDLLA 351 (450)
T ss_pred HHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 765332 233346777777766 78888888887766665443 46888888888887753
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.75 E-value=1.1e-16 Score=145.07 Aligned_cols=205 Identities=27% Similarity=0.338 Sum_probs=138.9
Q ss_pred ccccCCCCCcccccCcHHHHHH---HHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEc
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKE---IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 78 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~---l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~ 78 (270)
+.++++|.++++++|.+..+.. +.+.+... ...+++|+|||||||||++++++...+..++.++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 5688999999999999998766 77766542 3457899999999999999999999999999888
Q ss_pred chhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeE
Q 024249 79 GSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 154 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 154 (270)
+.... ...++.++..+. .....+|||||+|.+. ...+..+...++ +..++
T Consensus 69 a~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------~~~q~~LL~~le-------~~~ii 122 (413)
T PRK13342 69 AVTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------KAQQDALLPHVE-------DGTIT 122 (413)
T ss_pred ccccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------HHHHHHHHHHhh-------cCcEE
Confidence 75421 223444444442 3367899999998752 222333333332 23456
Q ss_pred EEEEeC-CC-CCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC----CCCCCHHHHHHHcCCCCHHHHHHHHH
Q 024249 155 VLMATN-RI-DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL----MRGIDLKKIAEKMNGASGAELKAVCT 228 (270)
Q Consensus 155 vi~tt~-~~-~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~la~~~~g~~~~dl~~l~~ 228 (270)
+|++|. ++ ..+++.+.+ |+ ..+.+++++.++...+++..+..... ..+..+..+++.+.| ..+.+.++++
T Consensus 123 lI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le 198 (413)
T PRK13342 123 LIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLE 198 (413)
T ss_pred EEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 665543 33 367788877 55 56889999999999999877654211 112224567777754 6666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024249 229 EAGMFALRERRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 229 ~a~~~a~~~~~~~i~~~d~~~a~~~~ 254 (270)
.+... ...|+.+++..++...
T Consensus 199 ~~~~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 199 LAALG-----VDSITLELLEEALQKR 219 (413)
T ss_pred HHHHc-----cCCCCHHHHHHHHhhh
Confidence 65433 3467888887777654
No 69
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.75 E-value=2.2e-16 Score=142.92 Aligned_cols=221 Identities=21% Similarity=0.318 Sum_probs=139.3
Q ss_pred CCCCccc-ccCcHHHH--HHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEEEEc
Q 024249 7 PDSTYDM-IGGLDQQI--KEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVS 78 (270)
Q Consensus 7 ~~~~~~~-i~G~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~i~ 78 (270)
+..+|++ ++|.++.. ..+.++...+ + .....++|+||+|+|||+|+++++++. +..+++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3567888 66765532 2223222221 1 123568999999999999999999754 57788999
Q ss_pred chhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEE
Q 024249 79 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 158 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~t 158 (270)
+.++...............|.... ..+++|+|||++.+.+. ...+..+..+++.+. ..+..+||.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~----------~~~~~~l~~~~n~~~---~~~~~iiits 239 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK----------ERTQEEFFHTFNALH---ENGKQIVLTS 239 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC----------HHHHHHHHHHHHHHH---HCCCCEEEec
Confidence 887765443322111111122211 24679999999987432 233455666666552 2233344444
Q ss_pred eCCCCC---chhhhcCCCCcc--eEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024249 159 TNRIDI---LDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGM 232 (270)
Q Consensus 159 t~~~~~---l~~~l~r~~r~~--~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 232 (270)
+..+.. +++.+.+ ||. ..+.+++|+.++|.+|++..+..... .++.-+..+|+...| +.+++..++.+...
T Consensus 240 ~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 240 DRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred CCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 444444 4455665 664 57899999999999999988766443 233446778887765 78888888887766
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 233 FALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 233 ~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
.+...+ ..++.+.+..++.....
T Consensus 317 ~a~~~~-~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 317 YASLTG-KPITLELAKEALKDLLR 339 (405)
T ss_pred HHHHhC-CCCCHHHHHHHHHHhcc
Confidence 664433 45777777777776644
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=1.8e-16 Score=145.48 Aligned_cols=217 Identities=18% Similarity=0.254 Sum_probs=146.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEE-----
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR----- 76 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~----- 76 (270)
+.++++|.+|++++|.+..++.|...+..- ..+..+||+||+|+||||+++++|+.++|..-.
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~ 78 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT 78 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence 457899999999999999999888876652 346779999999999999999999977653110
Q ss_pred -------EcchhHHHh----------hhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 77 -------VSGSELVQK----------YIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 77 -------i~~~~~~~~----------~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
-+|..+... ........++.+++.+.. ....|++|||+|.+. ..
T Consensus 79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~--- 143 (507)
T PRK06645 79 IKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KG--- 143 (507)
T ss_pred cCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HH---
Confidence 011111110 001123456666666542 345699999988752 12
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHH
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEK 214 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~ 214 (270)
.+..++..++. ....+.+|++|+.++.+.+.+.+ |. ..+++..++.++...+++..+...... .+..+..++..
T Consensus 144 a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 23344444432 23467777888888888888877 44 468899999999999998887755432 22236678888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 215 MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 215 ~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
++| +.+++.++++.+..++-.. ...|+.+++...+.
T Consensus 219 s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 877 8889888888876554211 22577777665543
No 71
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=2.4e-16 Score=146.33 Aligned_cols=204 Identities=18% Similarity=0.252 Sum_probs=140.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC----------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---------- 72 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~---------- 72 (270)
.++++|.+|++|+|.+..++.|..++... ..+..+||+||+|+||||+|+++|+.++|
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 47889999999999999999999888752 33577899999999999999999997765
Q ss_pred --------------eEEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 73 --------------TFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 73 --------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
.++.+++.+ ......++.++..+. .....|+||||+|.+. ....
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~ 135 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSF 135 (702)
T ss_pred cCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHH
Confidence 233333321 012234555555442 2456799999998752 2233
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~ 213 (270)
+.+...+++ ....+.+|++|+++..+...+++ |+ ..+.|..++.++-...++..+...... .+..+..++.
T Consensus 136 NALLKtLEE-----PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~ 207 (702)
T PRK14960 136 NALLKTLEE-----PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE 207 (702)
T ss_pred HHHHHHHhc-----CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444444443 23467788888988888877766 44 468899999999888888776654332 2233667888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 249 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~ 249 (270)
.+.| +.+++.+++..+..+ +...|+.+++..
T Consensus 208 ~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~ 238 (702)
T PRK14960 208 SAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKE 238 (702)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 8776 888888887766532 234566666644
No 72
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.73 E-value=3.2e-16 Score=152.51 Aligned_cols=219 Identities=19% Similarity=0.272 Sum_probs=150.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeEE
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFI 75 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~i 75 (270)
.++..++.++|.++.+..+.+.+... ...+++|+||||||||++++.+|... +..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r~-------------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLRR-------------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhcC-------------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 45667889999999877777766552 34568999999999999999999854 24566
Q ss_pred EEcchhHH--HhhhchhhHHHHHHHHHHHh-cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCC
Q 024249 76 RVSGSELV--QKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 152 (270)
Q Consensus 76 ~i~~~~~~--~~~~~~~~~~~~~~~~~a~~-~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 152 (270)
.++...+. ..+.|+.+..++.+|..+.. ..+.||||||++.+++++... +..| ....+... + .++.
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d--~~n~Lkp~---l----~~G~ 316 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD--AANLLKPA---L----ARGE 316 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc--HHHHhhHH---h----hCCC
Confidence 66666654 35778888999999998865 468999999999998765321 1122 11222222 2 4567
Q ss_pred eEEEEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-----CCCCHHHHHHHcCCCCH--
Q 024249 153 IKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-----RGIDLKKIAEKMNGASG-- 220 (270)
Q Consensus 153 ~~vi~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~g~~~-- 220 (270)
+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++.+||+.+.+.+... .+..+..++..+.+|.+
T Consensus 317 l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r 393 (852)
T TIGR03345 317 LRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred eEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccc
Confidence 88999998643 47899999 894 79999999999999987776544321 23335677788877643
Q ss_pred ---HHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHH
Q 024249 221 ---AELKAVCTEAGMFA-LRERRIHVTQEDFEMAV 251 (270)
Q Consensus 221 ---~dl~~l~~~a~~~a-~~~~~~~i~~~d~~~a~ 251 (270)
.---.++.+|+... +.....+...++++..+
T Consensus 394 ~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 394 QLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 33345667766543 22233344444444433
No 73
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=3.6e-16 Score=146.48 Aligned_cols=205 Identities=20% Similarity=0.264 Sum_probs=137.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 73 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------- 73 (270)
.++++|.+|++|+|.+..++.|...+..- ..+..+||+||+|+||||+++++|+.++|.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 36789999999999999999998888752 235568999999999999999999977663
Q ss_pred ---------------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 74 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 74 ---------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
++.+++.+ ......++.+...+. .....|+||||+|.+. ....
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~ 136 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSF 136 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHH
Confidence 23333221 011233444444432 3456799999998762 2233
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~ 213 (270)
+ .+|+.++. ....+.+|++|+++..+.+.+++ |+ ..+.|..++.++-...|+..+...... .+..+..|+.
T Consensus 137 N---ALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~ 208 (647)
T PRK07994 137 N---ALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLAR 208 (647)
T ss_pred H---HHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3 44444432 23567788888899999888877 53 678999999999888888776543332 2233567788
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
.+.| +.++...++..+... +...|+.+++...
T Consensus 209 ~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~ 240 (647)
T PRK07994 209 AADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAM 240 (647)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 8777 777777787765432 2223555555443
No 74
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.5e-17 Score=153.06 Aligned_cols=167 Identities=27% Similarity=0.419 Sum_probs=129.2
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH------H--
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL------V-- 83 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~------~-- 83 (270)
.|..|++++|+.|.+++..-...++ -.+..++|+||||+|||+|+++||+.++..|++++..-+ .
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 5789999999999999998544322 356789999999999999999999999999999875433 2
Q ss_pred -HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc------C---C-cCCCC
Q 024249 84 -QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD------G---F-EASNK 152 (270)
Q Consensus 84 -~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~------~---~-~~~~~ 152 (270)
..|+|....++-+.+..|...+| +++|||+|++...- ..||. ..+++.|+--. . . ..-..
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~------rGDPa--SALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF------RGDPA--SALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC------CCChH--HHHHhhcCHhhcCchhhccccCccchhh
Confidence 34788888888888889988888 89999999986532 23332 23444442110 0 0 01126
Q ss_pred eEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 024249 153 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHS 197 (270)
Q Consensus 153 ~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~ 197 (270)
|.+|+|+|+.+.++..++. |. +.|+++.++.++..+|.+.|+
T Consensus 467 VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 8899999999999999988 76 579999999999999999875
No 75
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=7.5e-16 Score=142.71 Aligned_cols=201 Identities=19% Similarity=0.274 Sum_probs=133.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc-----CCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcc
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 121 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~ 121 (270)
..++|+|++|+|||+|+++|+++. +..++++++.++...+...........|..- ..++++|+|||++.+..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gk- 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDK- 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCC-
Confidence 348999999999999999999864 5678999998877665443322222233322 335789999999987432
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC----CCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 024249 122 MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI----DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHS 197 (270)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~----~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~ 197 (270)
...+..+..+++.+. ..+..||+|++.. ..+++.+.++......+.+..|+.+.|.+||+..+
T Consensus 393 ---------e~tqeeLF~l~N~l~----e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 393 ---------ESTQEEFFHTFNTLH----NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ---------HHHHHHHHHHHHHHH----hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 344566777777763 2234466666653 34567777733336677999999999999999887
Q ss_pred ccCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhccchh
Q 024249 198 RRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMS 264 (270)
Q Consensus 198 ~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~~~ 264 (270)
....+. .+.-+..|+....+ +.+.|..++.+....+...+ ..++.+..+.++..+++......++
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~~~~~~~it 525 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIPEDSAPEIT 525 (617)
T ss_pred HhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhccccCCcCC
Confidence 654432 22235667777654 67888877777665554433 4577777777777765533333333
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=6.6e-16 Score=140.63 Aligned_cols=195 Identities=15% Similarity=0.223 Sum_probs=126.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc-----CCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcc
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 121 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~ 121 (270)
..++||||+|+|||+|+++++++. +..++++++.++...........-..-|......++.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~- 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK- 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc-
Confidence 459999999999999999999853 56788999888766543322111112233333446889999999876432
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch---hhhcCCCCcceEEEeCCCCHHHHHHHHHHhhc
Q 024249 122 MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD---QALLRPGRIDRKIEFPNPNEESRLDILKIHSR 198 (270)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~---~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~ 198 (270)
...+..+...++.+. ..+..+|+.+.+.+..++ +.+.++...+..+.+.+|+.+.|.+|++..+.
T Consensus 210 ---------~~~q~elf~~~n~l~---~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 ---------TGVQTELFHTFNELH---DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred ---------HHHHHHHHHHHHHHH---HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 223445666666553 223344444446666654 44555222356788999999999999998876
Q ss_pred cCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 199 RMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 199 ~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
.... .++.-+..||....| +.++|..++.+....+...+ ..++.+...+++..++.
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDFIK 334 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhc
Confidence 4322 233336677777765 77888877777655554333 46777777777777654
No 77
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.7e-17 Score=152.32 Aligned_cols=168 Identities=27% Similarity=0.434 Sum_probs=130.2
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH------H--
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL------V-- 83 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~------~-- 83 (270)
+|-.|++++|+.+.++|..-..+ |-.+|..++++||||+|||+++|+||+.++..|++++-.-+ .
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 58899999999999999885443 34578999999999999999999999999999999865432 2
Q ss_pred -HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhh------cC---Cc-CCCC
Q 024249 84 -QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL------DG---FE-ASNK 152 (270)
Q Consensus 84 -~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l------~~---~~-~~~~ 152 (270)
..|+|....++-+.+..+...+| +++|||+|++.... ..|+. ..++++|+-- +. .. .-.+
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~------qGDPa--sALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH------QGDPA--SALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC------CCChH--HHHHHhcChhhccchhhhccccccchhh
Confidence 24788888888888888888888 89999999997432 22332 2344444321 11 00 1136
Q ss_pred eEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhc
Q 024249 153 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR 198 (270)
Q Consensus 153 ~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~ 198 (270)
+.+|+|+|..+.+++.++. |+ +.|+++-+..++..+|.+.|+-
T Consensus 555 VLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 8899999999999999988 76 5799999999999999988753
No 78
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.2e-16 Score=145.65 Aligned_cols=207 Identities=16% Similarity=0.225 Sum_probs=139.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe--------
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 73 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~-------- 73 (270)
.+++++|.+|++|+|.+..++.|..++... ..+..+||+||+|+||||+++++|+.++|.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 468899999999999999999999988652 235668999999999999999999976552
Q ss_pred ----------------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 74 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 74 ----------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
++++++.. ......+++++..+. .....|++|||+|.+.. ..
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~------------~a 135 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG------------HS 135 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH------------HH
Confidence 34444321 112233555555443 23446999999987632 22
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHH
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 212 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la 212 (270)
.+ .+++.++. ....+.+|++|+++..+.+.+++ |. ..+++..++.++-...++..+...... .+..+..++
T Consensus 136 ~n---aLLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia 207 (509)
T PRK14958 136 FN---ALLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLA 207 (509)
T ss_pred HH---HHHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33 34444432 23467788888888888877776 33 346788888888777777666554332 223356788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 213 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
..+.| +.+++.+++..+..+ +...|+.+++...+
T Consensus 208 ~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 208 RAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 88766 888988888776533 23356666665543
No 79
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.72 E-value=4e-16 Score=135.50 Aligned_cols=206 Identities=26% Similarity=0.363 Sum_probs=131.4
Q ss_pred cCCCCCcccccCcHHHH---HHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 5 KVPDSTYDMIGGLDQQI---KEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~---~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
..+|.++++++|++..+ +-|.+.+.. ..-.+.+|||||||||||+++.||+..++.|..++...
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 45788999999999866 333444433 34566899999999999999999999999999998754
Q ss_pred HHHhhhchhhHHHHHHHHHHHhc----CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEE
Q 024249 82 LVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 157 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~----~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~ 157 (270)
.+.+.++.+++.|+.. ...|||+||++.|-.. .+..|...+ .++.+++|+
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~------------QQD~lLp~v-------E~G~iilIG 137 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA------------QQDALLPHV-------ENGTIILIG 137 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh------------hhhhhhhhh-------cCCeEEEEe
Confidence 2345688888888543 3579999999887322 223333333 345677776
Q ss_pred Ee-CCCC-CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhcc--CCCC------CCCCHHHHHHHcCCCCHHHHHHHH
Q 024249 158 AT-NRID-ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR--MNLM------RGIDLKKIAEKMNGASGAELKAVC 227 (270)
Q Consensus 158 tt-~~~~-~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~--~~~~------~~~~~~~la~~~~g~~~~dl~~l~ 227 (270)
+| .+|. .+.++++++.+ .+++.+.+.++..++++.-... ..+. .+.-.+.++..+.|-.-+-| +++
T Consensus 138 ATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~L 213 (436)
T COG2256 138 ATTENPSFELNPALLSRAR---VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLL 213 (436)
T ss_pred ccCCCCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH-HHH
Confidence 54 4555 57889988554 3788999999999988873221 2221 12224556777666333333 333
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 024249 228 TEAGMFALRERRIHVTQEDFEMAVAKVM 255 (270)
Q Consensus 228 ~~a~~~a~~~~~~~i~~~d~~~a~~~~~ 255 (270)
+.+...+ +... .+..+++++.+.+-.
T Consensus 214 E~~~~~~-~~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 214 ELAALSA-EPDE-VLILELLEEILQRRS 239 (436)
T ss_pred HHHHHhc-CCCc-ccCHHHHHHHHhhhh
Confidence 3333322 1122 333666666665543
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=9.5e-16 Score=146.23 Aligned_cols=190 Identities=21% Similarity=0.263 Sum_probs=130.1
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeE--------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF-------- 74 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~-------- 74 (270)
.++++|.+|++|+|.+..++.|..++..- ..+..+||+||+||||||+++++|+.++|..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 36889999999999999999998887752 2356679999999999999999999877641
Q ss_pred ----------------EEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 75 ----------------IRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 75 ----------------i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
+.+++.+ ......++.+...+. .....|+||||+|.+- ....
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAq 136 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSF 136 (944)
T ss_pred CchHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHH
Confidence 1121110 011223444444332 2345799999998862 2233
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~ 213 (270)
+ .+++.++. ....+.+|++|+++..+.+.+++ |. ..+.|.+++.++-.+.|+..+...... .+..+..|+.
T Consensus 137 N---ALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~ 208 (944)
T PRK14949 137 N---ALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAK 208 (944)
T ss_pred H---HHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3 44554432 23467778888888888888776 43 568899999999888888776543321 2223667788
Q ss_pred HcCCCCHHHHHHHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAG 231 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~ 231 (270)
.+.| +.+++..++..+.
T Consensus 209 ~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 209 AANG-SMRDALSLTDQAI 225 (944)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8877 7788888887665
No 81
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=4e-16 Score=145.86 Aligned_cols=206 Identities=17% Similarity=0.258 Sum_probs=140.3
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe--------
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 73 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~-------- 73 (270)
+.++++|.+|++|+|.+..++.|..++..- ..+..+||+||+|+||||+++++|+.++|.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~ 73 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI 73 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC
Confidence 467899999999999999999999988763 235668999999999999999999877652
Q ss_pred ---------------------EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCC
Q 024249 74 ---------------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGN 128 (270)
Q Consensus 74 ---------------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~ 128 (270)
++.++... ......+++++..+.. ....|++|||+|.+..
T Consensus 74 ~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------- 138 (618)
T PRK14951 74 TATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------- 138 (618)
T ss_pred CCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------
Confidence 12222111 1122345666655432 2346999999988632
Q ss_pred CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCC
Q 024249 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGID 207 (270)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~ 207 (270)
.. +..+++.++. ....+.+|++|+++..+...+++ |. ..++|..++.++..+.++..+...... .+..
T Consensus 139 ---~a---~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~A 207 (618)
T PRK14951 139 ---TA---FNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQA 207 (618)
T ss_pred ---HH---HHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 12 3345555542 23467788888888888877777 43 568899999998888888776554432 2223
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 208 LKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 208 ~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
+..|+..+.| +.+++.+++..+..+. ...|+.+++...
T Consensus 208 L~~La~~s~G-slR~al~lLdq~ia~~----~~~It~~~V~~~ 245 (618)
T PRK14951 208 LRLLARAARG-SMRDALSLTDQAIAFG----SGQLQEAAVRQM 245 (618)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHH
Confidence 6778888877 8888888876655432 335666665544
No 82
>PRK06893 DNA replication initiation factor; Validated
Probab=99.72 E-value=8.6e-16 Score=128.53 Aligned_cols=215 Identities=13% Similarity=0.171 Sum_probs=131.8
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEE
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRV 77 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i 77 (270)
+++...++.+|++.+|-++.. .+...... + .......++|+||||||||+|+++++++. +....++
T Consensus 5 l~~~~~~~~~fd~f~~~~~~~-~~~~~~~~-------~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~ 73 (229)
T PRK06893 5 LPIHQIDDETLDNFYADNNLL-LLDSLRKN-------F---IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYI 73 (229)
T ss_pred cCCCCCCcccccccccCChHH-HHHHHHHH-------h---hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEe
Confidence 456667788999988655421 11111111 1 11233458999999999999999999864 3344555
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEE
Q 024249 78 SGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~ 157 (270)
........ ....+... .+..+|+|||++.+.+ +......+..+++.+. .+++..+|+
T Consensus 74 ~~~~~~~~--------~~~~~~~~--~~~dlLilDDi~~~~~----------~~~~~~~l~~l~n~~~---~~~~~illi 130 (229)
T PRK06893 74 PLSKSQYF--------SPAVLENL--EQQDLVCLDDLQAVIG----------NEEWELAIFDLFNRIK---EQGKTLLLI 130 (229)
T ss_pred eHHHhhhh--------hHHHHhhc--ccCCEEEEeChhhhcC----------ChHHHHHHHHHHHHHH---HcCCcEEEE
Confidence 44321111 11222222 3557999999988643 2334456777777653 223333444
Q ss_pred EeC-CCCCch---hhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024249 158 ATN-RIDILD---QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGM 232 (270)
Q Consensus 158 tt~-~~~~l~---~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 232 (270)
|++ .+..++ +.+.++.+++..+.++.|+.++|.+|++..+..... .++.-+..|+.+.+| +.+.+..++.....
T Consensus 131 ts~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~ 209 (229)
T PRK06893 131 SADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDK 209 (229)
T ss_pred eCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 444 455554 667775566788999999999999999977654332 233335678888776 67777777776544
Q ss_pred HHHHhcCCCCCHHHHHHHH
Q 024249 233 FALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 233 ~a~~~~~~~i~~~d~~~a~ 251 (270)
.+..++ ..+|...+++++
T Consensus 210 ~~~~~~-~~it~~~v~~~L 227 (229)
T PRK06893 210 ASLQAQ-RKLTIPFVKEIL 227 (229)
T ss_pred HHHhcC-CCCCHHHHHHHh
Confidence 444333 368888887765
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=5.1e-16 Score=145.22 Aligned_cols=207 Identities=18% Similarity=0.272 Sum_probs=141.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeE--------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF-------- 74 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~-------- 74 (270)
.++++|.+|++|+|.+..++.|..++... ..+..+||+||+|+||||+++++|+.++|..
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 57899999999999999999999988853 3467799999999999999999999765431
Q ss_pred ----------------EEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 75 ----------------IRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 75 ----------------i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
+.++... +.....+++++..+. .....|+||||+|.+. ....
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~ 136 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAF 136 (709)
T ss_pred ccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHH
Confidence 1221110 112234666665442 2345799999988652 2223
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~ 213 (270)
+ .+++.++. ....+.+|++|+++..+...+++ |+ ..+.|+.++.++-...++..+...... .+..+..|+.
T Consensus 137 N---ALLKtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~ 208 (709)
T PRK08691 137 N---AMLKTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGR 208 (709)
T ss_pred H---HHHHHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 3 34444432 23467788888888888877765 54 457788999999888888777654432 2223677888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
.+.| +.+++..++..+..+. ...|+.+++...+-
T Consensus 209 ~A~G-slRdAlnLLDqaia~g----~g~It~e~V~~lLG 242 (709)
T PRK08691 209 AAAG-SMRDALSLLDQAIALG----SGKVAENDVRQMIG 242 (709)
T ss_pred HhCC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHHc
Confidence 8765 8889888888766542 33566666665543
No 84
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=7e-16 Score=142.06 Aligned_cols=204 Identities=18% Similarity=0.268 Sum_probs=138.1
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe----------
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------- 73 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~---------- 73 (270)
++++|.+|++|+|++..++.|..++... ..+..+||+||||+||||+++++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 6789999999999999999999888763 235567999999999999999999876431
Q ss_pred -------------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 74 -------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 74 -------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
++.+++.. ......++++...+. ...+.|++|||+|.+. . ..
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~---~a 132 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------K---SA 132 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------H---HH
Confidence 33333321 111223444433332 2456799999987541 1 22
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHc
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKM 215 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~ 215 (270)
+..++..++. ....+.+|++|+.+..+.+.+.+ |+ ..+.|.+|+.++-...++..+...... .+..+..++..+
T Consensus 133 ~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s 207 (504)
T PRK14963 133 FNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLA 207 (504)
T ss_pred HHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3445555542 23456778888888888888877 43 368999999999999998877654432 222356778887
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 216 NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 216 ~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
.| +.+++.+.++..... ...++.+++..++
T Consensus 208 ~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 208 DG-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred CC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 66 666776777665322 2367777776653
No 85
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.71 E-value=2e-16 Score=154.33 Aligned_cols=170 Identities=23% Similarity=0.337 Sum_probs=128.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeE
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTF 74 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~ 74 (270)
..++..++.++|.++.+..+.+.+... ...+++|+||||+|||++++.+|... +..+
T Consensus 171 ~~r~~~l~~vigr~~ei~~~i~iL~r~-------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~ 237 (857)
T PRK10865 171 RAEQGKLDPVIGRDEEIRRTIQVLQRR-------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 237 (857)
T ss_pred HHhcCCCCcCCCCHHHHHHHHHHHhcC-------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEE
Confidence 345667889999999888888877653 34568999999999999999999865 6778
Q ss_pred EEEcchhHH--HhhhchhhHHHHHHHHHHHh-cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCC
Q 024249 75 IRVSGSELV--QKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 151 (270)
Q Consensus 75 i~i~~~~~~--~~~~~~~~~~~~~~~~~a~~-~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 151 (270)
+.++...+. .++.|+.+..++.+|..+.. ..|+||||||++.|+++... .++. .....+... ..++
T Consensus 238 ~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~--~~~~--d~~~~lkp~-------l~~g 306 (857)
T PRK10865 238 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA--DGAM--DAGNMLKPA-------LARG 306 (857)
T ss_pred EEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC--ccch--hHHHHhcch-------hhcC
Confidence 888777765 45778888899999987644 57899999999999876421 1111 122222222 2456
Q ss_pred CeEEEEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCC
Q 024249 152 KIKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN 201 (270)
Q Consensus 152 ~~~vi~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~ 201 (270)
.+.+|++|+..+ ..|+++.| ||. .|.++.|+.+++..|++.+...+.
T Consensus 307 ~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 307 ELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred CCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 788999988766 47899999 996 588999999999999988765543
No 86
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2e-15 Score=133.85 Aligned_cols=223 Identities=21% Similarity=0.343 Sum_probs=152.3
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-----CeEEEEcchhH
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSEL 82 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-----~~~i~i~~~~~ 82 (270)
+...+.+.+.+++++++...+...+.. ..|.+++++||+|||||++++.++++.. ..+++++|...
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC
Confidence 344566999999999999998887653 3456699999999999999999998643 33899999754
Q ss_pred HHhh-------------h--chh-hHHHHHHHHHHH-hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc
Q 024249 83 VQKY-------------I--GEG-SRMVRELFVMAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD 145 (270)
Q Consensus 83 ~~~~-------------~--~~~-~~~~~~~~~~a~-~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 145 (270)
.+.+ + |.. .+..+.+..... ...+.||+|||+|.|.... + ..+..++..-.
T Consensus 84 ~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~------~------~~LY~L~r~~~ 151 (366)
T COG1474 84 RTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD------G------EVLYSLLRAPG 151 (366)
T ss_pred CCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc------c------hHHHHHHhhcc
Confidence 3221 0 111 112222222222 3456799999999997642 1 45666665543
Q ss_pred CCcCCCCeEEEEEeCCCC---CchhhhcCCCCc-ceEEEeCCCCHHHHHHHHHHhhccCCCCCCCC---HH---HHHHHc
Q 024249 146 GFEASNKIKVLMATNRID---ILDQALLRPGRI-DRKIEFPNPNEESRLDILKIHSRRMNLMRGID---LK---KIAEKM 215 (270)
Q Consensus 146 ~~~~~~~~~vi~tt~~~~---~l~~~l~r~~r~-~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~---~~---~la~~~ 215 (270)
.. ..++.+|+.+|+.+ .+++.+.+ ++ ..+|.||+++.+|-.+|++............+ +. .++...
T Consensus 152 ~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~ 227 (366)
T COG1474 152 EN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAE 227 (366)
T ss_pred cc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHc
Confidence 22 34678999999875 45566655 33 34599999999999999988765432211121 22 334444
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 216 NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 216 ~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
.| ..+-...+|+.|+..|.+++...++.+|+..|...+-+
T Consensus 228 ~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 228 SG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred Cc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 45 45555689999999999999999999999999555533
No 87
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.71 E-value=6.8e-16 Score=129.64 Aligned_cols=194 Identities=23% Similarity=0.325 Sum_probs=126.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC------eEE
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC------TFI 75 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~------~~i 75 (270)
|+|+++|.+|+++.|.+.+++.|+..+... ...++|+|||||||||+.++++|+++.+ ++.
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~-------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLRR-------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhhc-------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 899999999999999999999999888761 2456899999999999999999998765 233
Q ss_pred EEcchhHHHhhhchhhHHHHHHHHHHHhc---------CC-eEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc
Q 024249 76 RVSGSELVQKYIGEGSRMVRELFVMAREH---------AP-SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD 145 (270)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~~~a~~~---------~p-~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 145 (270)
..+.++-.+..+. ...+ .-|+..... .| .|++|||+|.+. ...+..+...++.
T Consensus 93 ~lnaSderGisvv--r~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt------------sdaq~aLrr~mE~-- 155 (346)
T KOG0989|consen 93 ELNASDERGISVV--REKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT------------SDAQAALRRTMED-- 155 (346)
T ss_pred hhcccccccccch--hhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh------------HHHHHHHHHHHhc--
Confidence 3343333222111 1111 112222211 22 699999998753 2234444444443
Q ss_pred CCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHHHcCCCCHHHHH
Q 024249 146 GFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLKKIAEKMNGASGAELK 224 (270)
Q Consensus 146 ~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~ 224 (270)
.+..+.+|++||.++.+...+.+ |. .++.|+....+.....|+.+.......-+ .-++.++..++| +-++-.
T Consensus 156 ---~s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 156 ---FSRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred ---cccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 24567889999999999888776 43 34567766676666777777665554322 226778888777 444444
Q ss_pred HHHHHHHH
Q 024249 225 AVCTEAGM 232 (270)
Q Consensus 225 ~l~~~a~~ 232 (270)
..++.+..
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 55555443
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=8e-16 Score=140.28 Aligned_cols=205 Identities=18% Similarity=0.321 Sum_probs=143.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-----------
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC----------- 72 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~----------- 72 (270)
++++|.+|+||+|++..++.|...+..- ..+..+||+||+|+||||+|+.+|+.++|
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 5789999999999999999888777652 34678999999999999999999985433
Q ss_pred -------------eEEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 73 -------------TFIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 73 -------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
.++++++.+ ..+...++.++..+.. ....|++|||+|.+. ...
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A-- 132 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSA-- 132 (491)
T ss_pred cHHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHH--
Confidence 234444432 1123446666665532 345799999987752 122
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHH
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEK 214 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~ 214 (270)
+..+++.++. ....+.+|++|+.++.+.+.+++ |+ ..+++..++.++....++..+...+.. .+..+..++..
T Consensus 133 -~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~ 206 (491)
T PRK14964 133 -FNALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN 206 (491)
T ss_pred -HHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3344555542 23467788888888888888877 43 458899999999888888876654432 33346678888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 215 MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 215 ~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
+.| +.+++..++..+..++ + ..|+.+++...+
T Consensus 207 s~G-slR~alslLdqli~y~---~-~~It~e~V~~ll 238 (491)
T PRK14964 207 SSG-SMRNALFLLEQAAIYS---N-NKISEKSVRDLL 238 (491)
T ss_pred cCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHH
Confidence 866 8888888888776544 2 367888777653
No 89
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.70 E-value=1.3e-15 Score=133.42 Aligned_cols=207 Identities=22% Similarity=0.275 Sum_probs=133.9
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-----CeEE
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFI 75 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-----~~~i 75 (270)
+|+|+++|.+|+++.|.++.++.+..++... ...+++|+||+|+|||+++++++++.. ..++
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 5999999999999999999999999888642 123589999999999999999998752 2344
Q ss_pred EEcchhHHHhhhchhhHHHHHHHHH-HH----h-cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcC
Q 024249 76 RVSGSELVQKYIGEGSRMVRELFVM-AR----E-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA 149 (270)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~~~-a~----~-~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 149 (270)
.+++.+... ...++..+.. +. . ..+.+|+|||+|.+. ......+..+++..
T Consensus 73 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~------------~~~~~~L~~~le~~----- 129 (319)
T PRK00440 73 ELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT------------SDAQQALRRTMEMY----- 129 (319)
T ss_pred Eeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC------------HHHHHHHHHHHhcC-----
Confidence 554332111 0111111111 11 1 235699999988762 12234455555432
Q ss_pred CCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHH
Q 024249 150 SNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCT 228 (270)
Q Consensus 150 ~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~ 228 (270)
.....+|++++....+.+.+.+ |+. .+++++++.++...+++.++..... .....+..++..+.| +.+.+...++
T Consensus 130 ~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~ 205 (319)
T PRK00440 130 SQNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQ 205 (319)
T ss_pred CCCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 2235577777777777666766 443 5899999999999999888765543 233346777777665 5555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 229 EAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 229 ~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
.+... ...++.+++..++.
T Consensus 206 ~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 206 AAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHc-----CCCCCHHHHHHHhC
Confidence 44332 24677777776653
No 90
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.70 E-value=1.4e-15 Score=143.57 Aligned_cols=221 Identities=19% Similarity=0.289 Sum_probs=142.2
Q ss_pred CCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeEEEEc
Q 024249 9 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVS 78 (270)
Q Consensus 9 ~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~i~i~ 78 (270)
+..+.|.|.++++++|..+|...+.. -.++..++|+|+||||||++++.+..++ ...+++++
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 34478999999999999999886542 2233445799999999999999997643 25678999
Q ss_pred chhHHHhh---------h-c-------hhhHHHHHHHHHHH--hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH
Q 024249 79 GSELVQKY---------I-G-------EGSRMVRELFVMAR--EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 139 (270)
Q Consensus 79 ~~~~~~~~---------~-~-------~~~~~~~~~~~~a~--~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~ 139 (270)
|..+...+ + + .....+..+|.... .....||+|||+|.|... .+..|..
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK------------~QDVLYn 891 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------------TQKVLFT 891 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc------------HHHHHHH
Confidence 85422110 0 0 11233445554432 233569999999998642 1344566
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCCC---CchhhhcCCCCcc-eEEEeCCCCHHHHHHHHHHhhccCC-CCCCCCHHHHHHH
Q 024249 140 LLNQLDGFEASNKIKVLMATNRID---ILDQALLRPGRID-RKIEFPNPNEESRLDILKIHSRRMN-LMRGIDLKKIAEK 214 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~~---~l~~~l~r~~r~~-~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~la~~ 214 (270)
+++... .....+.||+++|+.+ .+++.+.+ |+. ..+.|++++.++..+||+..+.... ...+.-+..+|+.
T Consensus 892 LFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArk 967 (1164)
T PTZ00112 892 LFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARK 967 (1164)
T ss_pred HHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 665432 1234688999998754 34555655 443 3478899999999999998876532 1222224555654
Q ss_pred cCCC--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 215 MNGA--SGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 215 ~~g~--~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
.+.. ..+-.-.+|+.|+.. ++...|+.+|+.+|...+..
T Consensus 968 VAq~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 968 VANVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred hhhcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 4322 223334667777754 24458999999999877643
No 91
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.2e-15 Score=141.94 Aligned_cols=206 Identities=17% Similarity=0.222 Sum_probs=134.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe--------
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 73 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~-------- 73 (270)
++++++|.+|++|+|.+..++.|..++..- .-+..+||+||+|+||||+++++|+.+.|.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 467899999999999999999999888752 124578999999999999999999877652
Q ss_pred ----------------EEEEcchhHHHhhhchhhHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 74 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 74 ----------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
++.+++..- .....++.+...+ ......||||||+|.+- ...
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a 135 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REA 135 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHH
Confidence 333433210 0111223222221 23455799999998762 222
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHH
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIA 212 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la 212 (270)
... ++..++. ....+++|++|+.+..+...+++ |+ ..+.|+.++.++...+|+..+..... ..+..+..++
T Consensus 136 ~na---LLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA 207 (624)
T PRK14959 136 FNA---LLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIA 207 (624)
T ss_pred HHH---HHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 333 4444432 23467788888888888877776 44 36789999999998888876655432 2223356677
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 213 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
+.+.| +.+++..++..+. + .+...|+.+++..+
T Consensus 208 ~~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~ 240 (624)
T PRK14959 208 RRAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGV 240 (624)
T ss_pred HHcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHH
Confidence 77765 5555556665442 1 23336777765544
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.70 E-value=6.8e-16 Score=137.40 Aligned_cols=208 Identities=21% Similarity=0.321 Sum_probs=139.5
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe-------
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT------- 73 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~------- 73 (270)
.|+|+.+|.+|++++|.++.++.+.+.+... ..+..+||+||+|+|||++++++++.+.+.
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 70 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEP 70 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3678999999999999999999999888642 245678999999999999999999865432
Q ss_pred -----------------EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 74 -----------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 74 -----------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
++.+++.. ......++.++..+.. ....|++|||+|.+. ..
T Consensus 71 c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~ 132 (355)
T TIGR02397 71 CNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KS 132 (355)
T ss_pred CCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HH
Confidence 23333221 0112235555555432 234699999988752 11
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHH
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKI 211 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l 211 (270)
. ...++..++. ....+.+|++|++++.+.+.+.+ |+ ..+++++|+.++..++++..++..... .+..+..+
T Consensus 133 ~---~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l 204 (355)
T TIGR02397 133 A---FNALLKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELI 204 (355)
T ss_pred H---HHHHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 2 2334444432 23457778888888887777776 54 468999999999999998877655431 22334566
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 212 AEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 212 a~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
++.+.| +++.+...++.+..++ . ..++.+|++.++
T Consensus 205 ~~~~~g-~~~~a~~~lekl~~~~---~-~~it~~~v~~~~ 239 (355)
T TIGR02397 205 ARAADG-SLRDALSLLDQLISFG---N-GNITYEDVNELL 239 (355)
T ss_pred HHHcCC-ChHHHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 777765 6666666666655433 1 247777776654
No 93
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.70 E-value=7.1e-16 Score=150.42 Aligned_cols=200 Identities=24% Similarity=0.325 Sum_probs=144.3
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeEEEE
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRV 77 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~i~i 77 (270)
+-.++.+.|.++.++.+.+++... ...+++|+||||||||++++.+|... +..++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r~-------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGRR-------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHccc-------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 346788999999999999988753 45678999999999999999999754 4678888
Q ss_pred cchhHH--HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEE
Q 024249 78 SGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 155 (270)
Q Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v 155 (270)
+...+. .++.|+.++.++.+|..+....+.||||||++.|++..... .+......+...+ ..+.+.+
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~----g~~~~a~lLkp~l-------~rg~l~~ 310 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE----GAIDAANILKPAL-------ARGELQC 310 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC----CcccHHHHhHHHH-------hCCCcEE
Confidence 888776 46778889999999999988889999999999998764311 1112223333222 3457889
Q ss_pred EEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccC----CC-CCCCCHHHHHHHcCCCCH-----
Q 024249 156 LMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM----NL-MRGIDLKKIAEKMNGASG----- 220 (270)
Q Consensus 156 i~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~----~~-~~~~~~~~la~~~~g~~~----- 220 (270)
|++|+..+ ..++++.+ ||. .+.++.|+.++...|++.....+ .. ..+.-+..++..+.+|.+
T Consensus 311 IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lP 387 (821)
T CHL00095 311 IGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLP 387 (821)
T ss_pred EEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCc
Confidence 99888654 36778888 885 58899999999999997654322 11 122235667777777654
Q ss_pred HHHHHHHHHHHHHH
Q 024249 221 AELKAVCTEAGMFA 234 (270)
Q Consensus 221 ~dl~~l~~~a~~~a 234 (270)
.-.-.++.+|+..+
T Consensus 388 dkaidlld~a~a~~ 401 (821)
T CHL00095 388 DKAIDLLDEAGSRV 401 (821)
T ss_pred hHHHHHHHHHHHHH
Confidence 33345666666543
No 94
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.9e-15 Score=139.96 Aligned_cols=206 Identities=17% Similarity=0.299 Sum_probs=137.0
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC---------
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--------- 72 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~--------- 72 (270)
|.++++|.+|++++|.+..++.+...+... ..+..+|++||+|+||||+|+++|+.+.|
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 678899999999999999999998887652 23567999999999999999999986543
Q ss_pred ---------------eEEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 73 ---------------TFIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 73 ---------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
.++.+++.. ......++.++..+.. ....|++|||+|.+- ...
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A 135 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSA 135 (605)
T ss_pred cccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHH
Confidence 122232211 0112234555444332 234699999988752 122
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHH
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIA 212 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la 212 (270)
...+...+++ ....+++|++|+.+..+.+.+++ |+ ..+++++++.++....++..+..... ..+..+..++
T Consensus 136 ~NaLLKtLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 136 WNALLKTLEE-----PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred HHHHHHHHHh-----CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344444433 23467777888888889888877 43 35899999999988888877655432 2223356677
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 213 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
..+.| +.+++..+++....+. + ..++.++++..
T Consensus 208 ~lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~el 240 (605)
T PRK05896 208 DLADG-SLRDGLSILDQLSTFK---N-SEIDIEDINKT 240 (605)
T ss_pred HHcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHHH
Confidence 77766 6777777777644332 2 23777766663
No 95
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.69 E-value=5.5e-16 Score=151.67 Aligned_cols=201 Identities=21% Similarity=0.315 Sum_probs=142.3
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeE
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTF 74 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~ 74 (270)
..++..++.++|.++.+..+.+.+... ...+++|+||||+|||++++.+|... +..+
T Consensus 166 ~~~~~~~~~~igr~~ei~~~~~~l~r~-------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~ 232 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEIRRTIQVLSRR-------------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL 232 (852)
T ss_pred HhhCCCCCcCCCcHHHHHHHHHHHhcC-------------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeE
Confidence 345667889999999888888877653 34667899999999999999999864 5677
Q ss_pred EEEcchhHH--HhhhchhhHHHHHHHHHHHhc-CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCC
Q 024249 75 IRVSGSELV--QKYIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 151 (270)
Q Consensus 75 i~i~~~~~~--~~~~~~~~~~~~~~~~~a~~~-~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 151 (270)
+.++...+. ..+.++.+..++.+|..+... .|.||||||++.|++++.. ...... ..+|.-+ ..+.
T Consensus 233 ~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~----~~~~d~----~~~Lk~~---l~~g 301 (852)
T TIGR03346 233 LALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA----EGAMDA----GNMLKPA---LARG 301 (852)
T ss_pred EEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC----cchhHH----HHHhchh---hhcC
Confidence 888776664 457788888999999988654 5899999999999865421 111111 2222222 2456
Q ss_pred CeEEEEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCC-----CHHHHHHHcCCCC--
Q 024249 152 KIKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI-----DLKKIAEKMNGAS-- 219 (270)
Q Consensus 152 ~~~vi~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-----~~~~la~~~~g~~-- 219 (270)
.+.+|++|+..+ ..|+++.| ||. .+.++.|+.+++..|++.+...+.....+ .+...+..+++|.
T Consensus 302 ~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~ 378 (852)
T TIGR03346 302 ELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD 378 (852)
T ss_pred ceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence 788999888753 46889988 895 58999999999999999876665443332 3455566666654
Q ss_pred ---HHHHHHHHHHHHH
Q 024249 220 ---GAELKAVCTEAGM 232 (270)
Q Consensus 220 ---~~dl~~l~~~a~~ 232 (270)
|.---.++.+|+.
T Consensus 379 r~lPdkAidlld~a~a 394 (852)
T TIGR03346 379 RFLPDKAIDLIDEAAA 394 (852)
T ss_pred cCCchHHHHHHHHHHH
Confidence 3333345555554
No 96
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.69 E-value=4e-15 Score=124.13 Aligned_cols=208 Identities=17% Similarity=0.221 Sum_probs=134.7
Q ss_pred cCCCCCccccc--CcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcc
Q 024249 5 KVPDSTYDMIG--GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 79 (270)
Q Consensus 5 ~~~~~~~~~i~--G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~ 79 (270)
...+.+|++.. +.+..++.+.+++.. ..+..++|+||+|||||+++++++.+. +.+++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 8 LPDDPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred CCCchhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH
Confidence 34456777774 466677777777542 346789999999999999999999754 467888988
Q ss_pred hhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEe
Q 024249 80 SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMAT 159 (270)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt 159 (270)
..+.... ...+... ..+.+|+|||+|.+.. +...+..+..+++.+. ..+. .+|+|+
T Consensus 75 ~~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~----------~~~~~~~L~~~l~~~~---~~~~-~iIits 130 (226)
T TIGR03420 75 AELAQAD--------PEVLEGL--EQADLVCLDDVEAIAG----------QPEWQEALFHLYNRVR---EAGG-RLLIAG 130 (226)
T ss_pred HHHHHhH--------HHHHhhc--ccCCEEEEeChhhhcC----------ChHHHHHHHHHHHHHH---HcCC-eEEEEC
Confidence 8775432 1222221 2346999999988632 1223455666666542 1223 455555
Q ss_pred C-CCCCch---hhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 024249 160 N-RIDILD---QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFA 234 (270)
Q Consensus 160 ~-~~~~l~---~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a 234 (270)
+ .+..++ +.+.++..+...+.+|+|+.+++..+++.+...... .++.-+..|+..++| +.+++..+++++...+
T Consensus 131 ~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 131 RAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRAS 209 (226)
T ss_pred CCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 5 333332 445542223567999999999999999877654332 122235667776544 8999999999887665
Q ss_pred HHhcCCCCCHHHHHHHH
Q 024249 235 LRERRIHVTQEDFEMAV 251 (270)
Q Consensus 235 ~~~~~~~i~~~d~~~a~ 251 (270)
...+ ..|+.+.+.+++
T Consensus 210 ~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 210 LAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHhC-CCCCHHHHHHHh
Confidence 5544 468877776654
No 97
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.2e-15 Score=141.66 Aligned_cols=206 Identities=18% Similarity=0.266 Sum_probs=138.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 73 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------- 73 (270)
.++++|.+|++|+|.+..++.|...+... ..+..+||+||+|+||||+++++|+.++|.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 36789999999999999999999888752 235668999999999999999999877652
Q ss_pred ---------------EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 74 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 74 ---------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
++.+++.. ......++.++..+.. ....|++|||+|.+. ....
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~ 136 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAF 136 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHH
Confidence 12222110 1123345666665532 345699999988762 1223
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~ 213 (270)
..+++.++. ....+.+|++|++++.+.+.+++ |. ..++|+.++.++-...+...+...... ....+..++.
T Consensus 137 ---naLLK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~ 208 (527)
T PRK14969 137 ---NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLAR 208 (527)
T ss_pred ---HHHHHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555542 23467788888888888877666 33 458899999998888777766543322 2223466777
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
.+.| +.++..+++..+..+ +...|+.+++...+
T Consensus 209 ~s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 209 AAAG-SMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 7765 778888888776543 34456777666554
No 98
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=8.9e-15 Score=133.05 Aligned_cols=193 Identities=15% Similarity=0.242 Sum_probs=124.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
..++|+||+|+|||+|+++++++. +..+++++...+...............|... ...+.+|+|||++.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k--- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGK--- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCC---
Confidence 568999999999999999999854 5778888887765544332221111223322 245679999999886432
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC-CC---CchhhhcCCCCc--ceEEEeCCCCHHHHHHHHHHhh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR-ID---ILDQALLRPGRI--DRKIEFPNPNEESRLDILKIHS 197 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~-~~---~l~~~l~r~~r~--~~~i~~~~p~~~~r~~il~~~~ 197 (270)
...+..+..+++.+. . .+..+|+|++. +. .+++.+.+ || +..+.+++|+.++|..|++..+
T Consensus 218 -------~~~qeelf~l~N~l~---~-~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 218 -------GATQEEFFHTFNSLH---T-EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred -------hhhHHHHHHHHHHHH---H-CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 234556666666552 1 23456666654 43 45567776 66 4778899999999999999887
Q ss_pred ccCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHh-cCCCCCHHHHHHHHHHHhhh
Q 024249 198 RRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMF-ALRE-RRIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 198 ~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~-a~~~-~~~~i~~~d~~~a~~~~~~~ 257 (270)
...... ++.-++.++....+ +.+.+...+...+.. |... ....++.++.+.++.++++.
T Consensus 285 ~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~ 346 (445)
T PRK12422 285 EALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEA 346 (445)
T ss_pred HHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhc
Confidence 665432 22224556666554 566776666655421 2211 23568888888888887543
No 99
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=4.3e-15 Score=138.46 Aligned_cols=206 Identities=17% Similarity=0.186 Sum_probs=135.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 73 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------- 73 (270)
.++++|.+|++|+|.+..++.|..++... ..+..+||+||+|+||||+++++|+.++|.
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 37899999999999999999999988762 245568999999999999999999876542
Q ss_pred -----------------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 74 -----------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 74 -----------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
++.+++... .+...++++...+. .....|+||||+|.+- ..
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~ 133 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TA 133 (584)
T ss_pred ccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HH
Confidence 222222110 11223444443332 2345699999988762 22
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHH
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKI 211 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l 211 (270)
..+. ++..++. ....+++|++|++++.+.+.+++ | ...++|..++.++..+.++..+...... .+..+..+
T Consensus 134 A~NA---LLK~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~I 205 (584)
T PRK14952 134 GFNA---LLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLV 205 (584)
T ss_pred HHHH---HHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3334 4444432 23467788888888888888877 4 2568899999988888888776654432 22234556
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 212 AEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 212 a~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
+..+.| +.+++.++++....++ ....|+.+++...
T Consensus 206 a~~s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 206 IRAGGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HHHcCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 666544 7788878777654332 1234555554443
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=2.3e-15 Score=145.26 Aligned_cols=190 Identities=18% Similarity=0.211 Sum_probs=128.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 73 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------- 73 (270)
.+++++.+|++|+|.+..++.|..++..- ..+..+||+||+||||||++++||+.+.|.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg 73 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG 73 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence 47899999999999999999999888752 234568999999999999999999977652
Q ss_pred -----------------EEEEcchhHHHhhhchhhHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 74 -----------------FIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 74 -----------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
++.+++... .....++.+...+ ......|+||||+|.+- ..
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~ 135 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQ 135 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HH
Confidence 122222110 0122334333332 23456799999998862 23
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHH
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKI 211 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l 211 (270)
..+.|+++|++. ...+++|++|++++.|.+.+++ |. ..++|..++.++..++|+..+....+. .+..+..+
T Consensus 136 a~NaLLK~LEEp-----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lL 207 (824)
T PRK07764 136 GFNALLKIVEEP-----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLV 207 (824)
T ss_pred HHHHHHHHHhCC-----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 444555555443 3467788888888888887777 33 468898888988888888776554432 22234566
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q 024249 212 AEKMNGASGAELKAVCTEAG 231 (270)
Q Consensus 212 a~~~~g~~~~dl~~l~~~a~ 231 (270)
+....| +.+++..+++...
T Consensus 208 a~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 208 IRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 777665 6677777666544
No 101
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=4.1e-15 Score=137.44 Aligned_cols=205 Identities=19% Similarity=0.292 Sum_probs=136.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC----------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---------- 72 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~---------- 72 (270)
.++++|.+|++++|.+..++.|...+... ..+..+||+||+|+||||+++.+|+.+.|
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 46889999999999999999998888752 23456899999999999999999986654
Q ss_pred --------------eEEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 73 --------------TFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 73 --------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
.++.+++..- .....++.++..+. .....|++|||+|.+. ....
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~ 136 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSF 136 (546)
T ss_pred ccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHH
Confidence 2222322110 11123344444332 2356799999988752 2233
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~ 213 (270)
..+...+++. ...+.+|++|+++..+.+.+++ |. ..++|..++.++-...++..+...... .+..+..++.
T Consensus 137 naLLK~LEep-----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 137 NALLKTLEEP-----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HHHHHHHhcC-----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4444444432 3456777788888888877776 43 568999999998888887766554322 2233566777
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
.+.| +.+++..+++.+..++ ...++.+++..+
T Consensus 209 ~s~G-dlR~alnlLek~i~~~----~~~It~~~V~~~ 240 (546)
T PRK14957 209 HAKG-SLRDALSLLDQAISFC----GGELKQAQIKQM 240 (546)
T ss_pred HcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 7755 7788778877766432 135777776664
No 102
>PRK08727 hypothetical protein; Validated
Probab=99.68 E-value=9.1e-15 Score=122.61 Aligned_cols=211 Identities=18% Similarity=0.235 Sum_probs=130.8
Q ss_pred ccccCCCCCcccc-cCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEE
Q 024249 2 KVEKVPDSTYDMI-GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRV 77 (270)
Q Consensus 2 ~~~~~~~~~~~~i-~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i 77 (270)
++...++.+|++. +|.++....+...... .....++|+||+|||||+|+.+++.+ .+...+++
T Consensus 9 ~~~~~~~~~f~~f~~~~~n~~~~~~~~~~~-------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~ 75 (233)
T PRK08727 9 ALRYPSDQRFDSYIAAPDGLLAQLQALAAG-------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL 75 (233)
T ss_pred cCCCCCcCChhhccCCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 4455667788886 4555544444332211 12355999999999999999999764 34555666
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEE
Q 024249 78 SGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~ 157 (270)
...++... +...+... .+..+|+|||++.+... ......+..+++... ..+..+|+
T Consensus 76 ~~~~~~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~----------~~~~~~lf~l~n~~~----~~~~~vI~ 131 (233)
T PRK08727 76 PLQAAAGR--------LRDALEAL--EGRSLVALDGLESIAGQ----------REDEVALFDFHNRAR----AAGITLLY 131 (233)
T ss_pred eHHHhhhh--------HHHHHHHH--hcCCEEEEeCcccccCC----------hHHHHHHHHHHHHHH----HcCCeEEE
Confidence 65443321 22233322 34579999999876432 233445666666652 23455777
Q ss_pred EeCC-CCCc---hhhhcCCCCc--ceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHH
Q 024249 158 ATNR-IDIL---DQALLRPGRI--DRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEA 230 (270)
Q Consensus 158 tt~~-~~~l---~~~l~r~~r~--~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a 230 (270)
|++. +..+ .+.+.+ || ...+.+++|+.+++.++++..+....+ .++..+..|++.++| +.+.+..+++..
T Consensus 132 ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l 208 (233)
T PRK08727 132 TARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRL 208 (233)
T ss_pred ECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 7664 4444 466766 54 457899999999999999986554322 233346678888765 445554556655
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH
Q 024249 231 GMFALRERRIHVTQEDFEMAVAK 253 (270)
Q Consensus 231 ~~~a~~~~~~~i~~~d~~~a~~~ 253 (270)
...+...+ ..+|.+.+++++..
T Consensus 209 ~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 209 DRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHhC-CCCCHHHHHHHHhh
Confidence 54444433 47888888877653
No 103
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.68 E-value=1.1e-15 Score=147.47 Aligned_cols=221 Identities=21% Similarity=0.330 Sum_probs=143.6
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH--------
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV-------- 83 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~-------- 83 (270)
+++.|++++|+.|.+++...... +-..+..++|+||||+|||++++.+|+..+.++++++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 46999999999999999864322 113567899999999999999999999999888877654321
Q ss_pred -HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc------CC----cCCCC
Q 024249 84 -QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD------GF----EASNK 152 (270)
Q Consensus 84 -~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~------~~----~~~~~ 152 (270)
..+.|.....+.+.+..+....| |++|||+|.+.+.. ..+ ....+.++++.-. .+ ..-.+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~------~g~--~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM------RGD--PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc------CCC--HHHHHHHHhccccEEEEecccccccccCCc
Confidence 12444444455555555554555 89999999986432 122 2345666664210 00 01246
Q ss_pred eEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhcc-----CCCC-CC--CC---HHHHHHH-cCCCCH
Q 024249 153 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR-----MNLM-RG--ID---LKKIAEK-MNGASG 220 (270)
Q Consensus 153 ~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~-----~~~~-~~--~~---~~~la~~-~~g~~~ 220 (270)
+++|+|+|.. .++++++. |+. .+.++.++.++..+|.+.++-. .... .. ++ ...++.. +..+-.
T Consensus 466 v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~Ga 541 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGV 541 (784)
T ss_pred eEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCC
Confidence 8889999887 59999988 884 7899999999999999887631 1111 11 22 2333332 233344
Q ss_pred HHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHH
Q 024249 221 AELKAVCTEAGMFALRE-------RRIHVTQEDFEMAVA 252 (270)
Q Consensus 221 ~dl~~l~~~a~~~a~~~-------~~~~i~~~d~~~a~~ 252 (270)
+.++..+++.+..++.+ ....++.+++.+.+-
T Consensus 542 R~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 542 RSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 67776666655544432 124677887766553
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.68 E-value=1.2e-14 Score=121.95 Aligned_cols=212 Identities=14% Similarity=0.161 Sum_probs=131.9
Q ss_pred ccccCCCCCccccc-C-cHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEE
Q 024249 2 KVEKVPDSTYDMIG-G-LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIR 76 (270)
Q Consensus 2 ~~~~~~~~~~~~i~-G-~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~ 76 (270)
++...++.+|++.. | ....+..+.++...+ .+..++|+||+|||||+|+++++++. +..+.+
T Consensus 12 ~~~~~~~~~fd~f~~~~n~~a~~~l~~~~~~~-------------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y 78 (235)
T PRK08084 12 PLYLPDDETFASFYPGDNDSLLAALQNALRQE-------------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGY 78 (235)
T ss_pred CCCCCCcCCccccccCccHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 34456677888865 4 444555555544321 34579999999999999999999754 334555
Q ss_pred EcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEE
Q 024249 77 VSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVL 156 (270)
Q Consensus 77 i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi 156 (270)
+........ ...++.... +..+|+|||++.+. .+......+..+++.+. .+++..+|
T Consensus 79 ~~~~~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~----------~~~~~~~~lf~l~n~~~---e~g~~~li 135 (235)
T PRK08084 79 VPLDKRAWF--------VPEVLEGME--QLSLVCIDNIECIA----------GDELWEMAIFDLYNRIL---ESGRTRLL 135 (235)
T ss_pred EEHHHHhhh--------hHHHHHHhh--hCCEEEEeChhhhc----------CCHHHHHHHHHHHHHHH---HcCCCeEE
Confidence 555442211 111111111 13689999998763 23455666777776652 23334566
Q ss_pred EEeCC-CCC---chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q 024249 157 MATNR-IDI---LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAG 231 (270)
Q Consensus 157 ~tt~~-~~~---l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~ 231 (270)
+|++. +.. +.+.+.++..-...+.+.+|+.+++.++++.......+ .++.-+..|+.+.+| +.+.+..++....
T Consensus 136 ~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 136 ITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred EeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 66654 333 45677772223477899999999999999876554332 233336678888876 7788888888754
Q ss_pred HHHHHhcCCCCCHHHHHHHH
Q 024249 232 MFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 232 ~~a~~~~~~~i~~~d~~~a~ 251 (270)
..++.. ...+|.+.+.+++
T Consensus 215 ~~~l~~-~~~it~~~~k~~l 233 (235)
T PRK08084 215 RASITA-QRKLTIPFVKEIL 233 (235)
T ss_pred HHHHhc-CCCCCHHHHHHHH
Confidence 444333 3458888777765
No 105
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.67 E-value=4.3e-15 Score=141.72 Aligned_cols=209 Identities=22% Similarity=0.302 Sum_probs=133.6
Q ss_pred ccccCCCCCcccccCcHHHHH---HHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEc
Q 024249 2 KVEKVPDSTYDMIGGLDQQIK---EIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 78 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~---~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~ 78 (270)
+.++++|.++++++|.+..+. .+.+.+.. ....+++|+|||||||||+++++++..+..++.++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 357788999999999999875 45555443 23356899999999999999999999988888887
Q ss_pred chhHHHhhhchhhHHHHHHHHHH-----HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCe
Q 024249 79 GSELVQKYIGEGSRMVRELFVMA-----REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 153 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~a-----~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 153 (270)
+..... ..++..+..+ ......+|||||+|.+. ...+..+... + .+..+
T Consensus 85 a~~~~i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln------------~~qQdaLL~~---l----E~g~I 138 (725)
T PRK13341 85 AVLAGV-------KDLRAEVDRAKERLERHGKRTILFIDEVHRFN------------KAQQDALLPW---V----ENGTI 138 (725)
T ss_pred hhhhhh-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCC------------HHHHHHHHHH---h----cCceE
Confidence 653211 1122233322 12356799999998762 1223333333 3 22345
Q ss_pred EEEEEeCC-C-CCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccC-------CC-CCCCCHHHHHHHcCCCCHHHH
Q 024249 154 KVLMATNR-I-DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM-------NL-MRGIDLKKIAEKMNGASGAEL 223 (270)
Q Consensus 154 ~vi~tt~~-~-~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~-------~~-~~~~~~~~la~~~~g~~~~dl 223 (270)
++|++|.. + ..+++++.+++ ..+.+++++.++...+++..+... .. ..+.-+..|+..+.| +.+.+
T Consensus 139 iLI~aTTenp~~~l~~aL~SR~---~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~l 214 (725)
T PRK13341 139 TLIGATTENPYFEVNKALVSRS---RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSL 214 (725)
T ss_pred EEEEecCCChHhhhhhHhhccc---cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHH
Confidence 56655532 2 35777777643 358899999999999998876521 11 112225667777755 67777
Q ss_pred HHHHHHHHHHHHHhc--CCCCCHHHHHHHHHH
Q 024249 224 KAVCTEAGMFALRER--RIHVTQEDFEMAVAK 253 (270)
Q Consensus 224 ~~l~~~a~~~a~~~~--~~~i~~~d~~~a~~~ 253 (270)
..+++.+...+.... ...++.+++++++.+
T Consensus 215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 215 LNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 777777664332111 234777777776655
No 106
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=5.9e-15 Score=139.27 Aligned_cols=212 Identities=22% Similarity=0.361 Sum_probs=139.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE---c
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV---S 78 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i---~ 78 (270)
++++++|.+|++|+|.+..++.|...+... ..+..+|++||+|+|||++|+++|..+.|..... .
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 568899999999999999999999988753 2356789999999999999999998765532100 1
Q ss_pred chhHHH---hh-----h----chhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHH
Q 024249 79 GSELVQ---KY-----I----GEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 142 (270)
Q Consensus 79 ~~~~~~---~~-----~----~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~ 142 (270)
|..... .. . ......++.+...+.. ....|++|||+|.+- ... +..++.
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A---~NALLK 140 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSA---FNALLK 140 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHH---HHHHHH
Confidence 111100 00 0 0112345666555442 445799999988752 122 334455
Q ss_pred hhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCC-CCCHHHHHHHcCCCCHH
Q 024249 143 QLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMR-GIDLKKIAEKMNGASGA 221 (270)
Q Consensus 143 ~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~~~~ 221 (270)
.++. ....+++|++|++++.+.+.+++ |+ ..++|.+++.++....++..+......- +..+..+|..+.| +.+
T Consensus 141 tLEE--PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR 214 (725)
T PRK07133 141 TLEE--PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLR 214 (725)
T ss_pred Hhhc--CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 5542 23467778888888999888877 54 4789999999998888887665544321 1225667777766 677
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 222 ELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 222 dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
++..+++.+..+. ...++.++++.+
T Consensus 215 ~AlslLekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 215 DALSIAEQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 7777777654432 223666666654
No 107
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=3.8e-16 Score=128.54 Aligned_cols=133 Identities=26% Similarity=0.389 Sum_probs=98.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhH-----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSEL----------------------------------- 82 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~----------------------------------- 82 (270)
+|.+.+|..+.|.||||||||||+|.||+ .+..+.+.+++..+
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 45688999999999999999999999997 33444455444321
Q ss_pred ---------------------HHhhhch--hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH
Q 024249 83 ---------------------VQKYIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 139 (270)
Q Consensus 83 ---------------------~~~~~~~--~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~ 139 (270)
...|+.+ ++.+.+..+++|....|.|+++|| |.+..|..++..+.+
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE-----------PFgALDalTR~~lq~ 171 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE-----------PFGALDALTREELQD 171 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC-----------CcchhhHHHHHHHHH
Confidence 1122333 445677888889999999999999 899999999999999
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCCCCch---h-hh---cCCCCcceEEEeCCCCH
Q 024249 140 LLNQLDGFEASNKIKVLMATNRIDILD---Q-AL---LRPGRIDRKIEFPNPNE 186 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~~~l~---~-~l---~r~~r~~~~i~~~~p~~ 186 (270)
.+..+. ...+.+|++.||++++.- + .+ -+|+++...+.++.|.+
T Consensus 172 ~l~~lw---~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rp 222 (248)
T COG1116 172 ELLRLW---EETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRP 222 (248)
T ss_pred HHHHHH---HhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCC
Confidence 888884 566899999999977432 1 11 24566766677666633
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=4.6e-15 Score=132.71 Aligned_cols=207 Identities=18% Similarity=0.256 Sum_probs=135.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 73 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------- 73 (270)
-++++|.+|++++|.+..++.+.+.+... ..+..++|+||+|+|||++++++++...+.
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 47889999999999999999999888762 235689999999999999999999876542
Q ss_pred ---EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcC
Q 024249 74 ---FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG 146 (270)
Q Consensus 74 ---~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 146 (270)
++.++... ......++.++..+.. ..+.||++||+|.+.. .. +..++..++.
T Consensus 76 ~~~~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~---~~~ll~~le~ 134 (367)
T PRK14970 76 SFNIFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AA---FNAFLKTLEE 134 (367)
T ss_pred CcceEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HH---HHHHHHHHhC
Confidence 12222111 1112345555554432 3457999999886521 12 2334444432
Q ss_pred CcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHH
Q 024249 147 FEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKA 225 (270)
Q Consensus 147 ~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~ 225 (270)
......+|++|+....+.+.+.+++ ..+++++|+.++...++...+..... .++..+..++..+.| +.+.+..
T Consensus 135 --~~~~~~~Il~~~~~~kl~~~l~sr~---~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~ 208 (367)
T PRK14970 135 --PPAHAIFILATTEKHKIIPTILSRC---QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALS 208 (367)
T ss_pred --CCCceEEEEEeCCcccCCHHHHhcc---eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHH
Confidence 2234566677777788888877633 35889999999988888877665443 233446667777655 6666666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 226 VCTEAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 226 l~~~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
.++....++ +. .++.++++..+.
T Consensus 209 ~lekl~~y~---~~-~it~~~v~~~~~ 231 (367)
T PRK14970 209 IFDRVVTFC---GK-NITRQAVTENLN 231 (367)
T ss_pred HHHHHHHhc---CC-CCCHHHHHHHhC
Confidence 666555433 22 266766665544
No 109
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=7.1e-15 Score=135.01 Aligned_cols=213 Identities=19% Similarity=0.266 Sum_probs=138.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeE-------
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF------- 74 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~------- 74 (270)
+.++++|.+|+++.|.+..++.+...+..- ..+..+||+||+|+||||+++.+|..++|.-
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 567889999999999999999999888652 2345688999999999999999998765410
Q ss_pred -EEEcchhHHHhh----------hchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH
Q 024249 75 -IRVSGSELVQKY----------IGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 139 (270)
Q Consensus 75 -i~i~~~~~~~~~----------~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~ 139 (270)
...+|..+.... .......++.+...+. ...+.|++|||+|.+. ..... .
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~n---a 138 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFN---A 138 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHH---H
Confidence 001111111100 0011223444444433 2345799999988752 11223 3
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHcCCC
Q 024249 140 LLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGA 218 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~ 218 (270)
++..++. ....+++|++|++++.+.+.+.+ |+ ..+.+++++.++....++..++..... .+..+..+++.+.|
T Consensus 139 LLk~LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G- 212 (486)
T PRK14953 139 LLKTLEE--PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG- 212 (486)
T ss_pred HHHHHhc--CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 4444432 23456677778888888887776 44 368999999999999998887765432 22235667777765
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 219 SGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 219 ~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
+.+++.++++.+..++ ...++.++++.++
T Consensus 213 ~lr~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 213 GMRDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred CHHHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 6778878887765432 3357777777643
No 110
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=7.4e-15 Score=137.26 Aligned_cols=203 Identities=21% Similarity=0.312 Sum_probs=139.1
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe----------
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------- 73 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~---------- 73 (270)
++.+|.+|++++|.+..++.+...+... ..+..+||+||+|+|||++++.+|+...|.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 5789999999999999999999988762 245678999999999999999999865532
Q ss_pred --------------EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 74 --------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 74 --------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
++.+++.. +.....++++...+.. ....|++|||+|.+.. .
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------~--- 134 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------G--- 134 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------H---
Confidence 22332211 1223446666665542 3456999999887621 1
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHH
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEK 214 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~ 214 (270)
.+..++..++. ....+++|++|+.++.+.+.+++ |+ ..++|+.|+.++....++..+...... .+..+..++..
T Consensus 135 a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~ 209 (559)
T PRK05563 135 AFNALLKTLEE--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARA 209 (559)
T ss_pred HHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 23445555542 23456677777788888888876 44 357899999999888888877654432 22335667887
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 024249 215 MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 249 (270)
Q Consensus 215 ~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~ 249 (270)
+.| +.++...+++.+..++ ...++.+|+..
T Consensus 210 s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~ 239 (559)
T PRK05563 210 AEG-GMRDALSILDQAISFG----DGKVTYEDALE 239 (559)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 776 8888888887765442 23466665554
No 111
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.65 E-value=3.6e-15 Score=133.39 Aligned_cols=183 Identities=19% Similarity=0.325 Sum_probs=121.9
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe----------------
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------------- 73 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~---------------- 73 (270)
.|++|+|+++.++.|...+...... +..++...+..+||+||+|+|||++++++|..+.|.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 4899999999999999999876432 233444567889999999999999999999865442
Q ss_pred -------EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHH
Q 024249 74 -------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 142 (270)
Q Consensus 74 -------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~ 142 (270)
+..+.... .......++.++..+.. ....|++|||+|.+. ....+.+...++
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~LE 142 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAVE 142 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHhh
Confidence 11111110 01122346666666543 344699999998863 223344444443
Q ss_pred hhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHH
Q 024249 143 QLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAE 222 (270)
Q Consensus 143 ~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~d 222 (270)
+ ...+..+|++|++++.+.+.+++ |+ ..+.|++|+.++..+.+... ... .......++..++|..+..
T Consensus 143 e-----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~-~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 143 E-----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGV-DPETARRAARASQGHIGRA 210 (394)
T ss_pred c-----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCC-CHHHHHHHHHHcCCCHHHH
Confidence 2 23456677777778999999888 54 57999999999877777532 121 2223456788888877765
Q ss_pred HH
Q 024249 223 LK 224 (270)
Q Consensus 223 l~ 224 (270)
+.
T Consensus 211 ~~ 212 (394)
T PRK07940 211 RR 212 (394)
T ss_pred HH
Confidence 54
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.65 E-value=4e-14 Score=118.37 Aligned_cols=206 Identities=16% Similarity=0.222 Sum_probs=131.8
Q ss_pred ccccCCCCCccccc--CcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEE
Q 024249 2 KVEKVPDSTYDMIG--GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIR 76 (270)
Q Consensus 2 ~~~~~~~~~~~~i~--G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~ 76 (270)
+.-..++.+|++.. +.+..+..+.++.. +...+..++|+||+|||||+|+++++++ .+..+++
T Consensus 8 ~~~~~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~ 75 (227)
T PRK08903 8 DLGPPPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARY 75 (227)
T ss_pred CCCCCChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 34445677888855 34455555555443 1245678999999999999999999985 3667888
Q ss_pred EcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEE
Q 024249 77 VSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVL 156 (270)
Q Consensus 77 i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi 156 (270)
+++..+... + .....+.+|+|||+|.+. ...+..+..+++... ......+|
T Consensus 76 i~~~~~~~~------------~--~~~~~~~~liiDdi~~l~------------~~~~~~L~~~~~~~~---~~~~~~vl 126 (227)
T PRK08903 76 LDAASPLLA------------F--DFDPEAELYAVDDVERLD------------DAQQIALFNLFNRVR---AHGQGALL 126 (227)
T ss_pred EehHHhHHH------------H--hhcccCCEEEEeChhhcC------------chHHHHHHHHHHHHH---HcCCcEEE
Confidence 887765321 1 112346799999998752 123455666666553 22233344
Q ss_pred EEeCCCC---CchhhhcCCCCc--ceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHH
Q 024249 157 MATNRID---ILDQALLRPGRI--DRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEA 230 (270)
Q Consensus 157 ~tt~~~~---~l~~~l~r~~r~--~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a 230 (270)
++++... .+.+.+.+ || ...+.+++|+.+++..+++.+....... ++.-+..++...+| +.+++..+++.-
T Consensus 127 ~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l 203 (227)
T PRK08903 127 VAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDAL 203 (227)
T ss_pred EeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 4444321 12344444 44 5689999999998988888765543321 22235667776655 889998888886
Q ss_pred HHHHHHhcCCCCCHHHHHHHHH
Q 024249 231 GMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 231 ~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
...+.... ..|+...+.+++.
T Consensus 204 ~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 204 DRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHhC-CCCCHHHHHHHHh
Confidence 55554444 5888888887764
No 113
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=8e-16 Score=123.58 Aligned_cols=113 Identities=23% Similarity=0.453 Sum_probs=92.8
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhH------------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSEL------------------------------------ 82 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~------------------------------------ 82 (270)
+.+.+|..+.|.||||||||||+|||.+ .++.+.+.+++..+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 4578899999999999999999999996 56777788776321
Q ss_pred ---------------------------HHhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 83 ---------------------------VQKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 83 ---------------------------~~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
...|+. .++++.+.++++|.+.+|.++++|| |++.+||+.
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE-----------PTSALDPEl 171 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE-----------PTSALDPEL 171 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC-----------CcccCCHHH
Confidence 111222 3567788999999999999999999 899999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
...+...+..+ .+.+.++|+.||.+......
T Consensus 172 v~EVL~vm~~L----A~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 172 VGEVLDVMKDL----AEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHHHH----HHcCCeEEEEechhHHHHHh
Confidence 99999999988 56789999999998765544
No 114
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=2.6e-14 Score=130.41 Aligned_cols=190 Identities=14% Similarity=0.282 Sum_probs=131.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh-----cCCeEEEEcchhHHHhhhchhhH---HHHHHHHHHHhcCCeEEEEcCCCccc
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSGSELVQKYIGEGSR---MVRELFVMAREHAPSIIFMDEIDSIG 118 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~-----~~~~~i~i~~~~~~~~~~~~~~~---~~~~~~~~a~~~~p~il~lDeid~l~ 118 (270)
..++|+|++|+|||+|+++++++ .+..++++++.++.......... .+..... ....+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~--~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKN--EICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHH--HhccCCEEEEecccccc
Confidence 45899999999999999999984 35778899988877665543322 1222111 22467799999998763
Q ss_pred CcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC-CC---chhhhcCCCCc--ceEEEeCCCCHHHHHHH
Q 024249 119 SARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI-DI---LDQALLRPGRI--DRKIEFPNPNEESRLDI 192 (270)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~-~~---l~~~l~r~~r~--~~~i~~~~p~~~~r~~i 192 (270)
+ ....+..+..+++.+. . .+..+|+|++.+ .. +++.+.+ || +..+.+.+|+.++|.+|
T Consensus 220 ~----------k~~~~e~lf~l~N~~~---~-~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 220 Y----------KEKTNEIFFTIFNNFI---E-NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred C----------CHHHHHHHHHHHHHHH---H-cCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 2 3345667777777763 2 233566776653 33 3456666 55 56678999999999999
Q ss_pred HHHhhccCCC---CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Q 024249 193 LKIHSRRMNL---MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER-RIHVTQEDFEMAVAKVM 255 (270)
Q Consensus 193 l~~~~~~~~~---~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~-~~~i~~~d~~~a~~~~~ 255 (270)
++..+..... .++.-+..|+..+.| +.+.+..++.+....+.... ...++.+.+..++.++.
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 9988765432 222235667777766 88999999988876665542 25788888888888763
No 115
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=2.1e-14 Score=132.23 Aligned_cols=204 Identities=21% Similarity=0.269 Sum_probs=137.4
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC---------
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--------- 72 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~--------- 72 (270)
+.++++|.+|++|+|.+..++.|...+..- ..+..+|++||+|+|||++++++++.+.+
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 468999999999999999999999888652 34566899999999999999999986532
Q ss_pred ---------------eEEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 73 ---------------TFIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 73 ---------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
.++.+++.+ ..+...+++.+..+.. ....|++|||+|.+. ...
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A 133 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEA 133 (535)
T ss_pred cccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHH
Confidence 123332211 0112345555543321 234699999987652 233
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHH
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 212 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la 212 (270)
.+.+...+++. ...+.+|++|+++..+.+.+++ |. ..++|.+++.++-...++..+...+.. .+..+..++
T Consensus 134 ~NALLK~LEEp-----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia 205 (535)
T PRK08451 134 FNALLKTLEEP-----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILA 205 (535)
T ss_pred HHHHHHHHhhc-----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44444444432 3457778888888888888877 43 578999999988888887766654332 223456777
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 024249 213 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFE 248 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~ 248 (270)
..+.| +.+++..+++.+..++ ...++.+++.
T Consensus 206 ~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~ 236 (535)
T PRK08451 206 RSGNG-SLRDTLTLLDQAIIYC----KNAITESKVA 236 (535)
T ss_pred HHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHH
Confidence 77766 8888888888776554 2234555444
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=8.2e-15 Score=132.14 Aligned_cols=209 Identities=16% Similarity=0.235 Sum_probs=133.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe----------
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------- 73 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~---------- 73 (270)
++++|.+|++|.|.+..++.|...+... ..+..++|+||+|+||||+|+++|+.+.|.
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 6789999999999999999988877752 345679999999999999999999977652
Q ss_pred ----------------------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCC
Q 024249 74 ----------------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSG 127 (270)
Q Consensus 74 ----------------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~ 127 (270)
++.+++.. ......++.+...+. .....|++|||+|.+.
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------- 140 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------- 140 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC---------
Confidence 11111110 011233444443331 2334699999988752
Q ss_pred CCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCC
Q 024249 128 NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGI 206 (270)
Q Consensus 128 ~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~ 206 (270)
......+ +..++. .....++|++|++...+.+.+.+ |. ..+++++++.++-...++..+..... ..+.
T Consensus 141 ---~~~~~~L---Lk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~ 209 (397)
T PRK14955 141 ---IAAFNAF---LKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDAD 209 (397)
T ss_pred ---HHHHHHH---HHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 1223333 444432 23456677777777777777765 33 35789889888888777776654332 2223
Q ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHH
Q 024249 207 DLKKIAEKMNGASGAELKAVCTEAGMFALR-ERRIHVTQEDFEMAV 251 (270)
Q Consensus 207 ~~~~la~~~~g~~~~dl~~l~~~a~~~a~~-~~~~~i~~~d~~~a~ 251 (270)
.+..++..+.| +.+.+...++.+..++.. .....|+.++++..+
T Consensus 210 al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 210 ALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 35667777765 677777777766555421 223477877776654
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=3.7e-14 Score=132.88 Aligned_cols=213 Identities=18% Similarity=0.212 Sum_probs=141.8
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEc----
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS---- 78 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~---- 78 (270)
-++++|.+|++|+|.+..++.|...+..- ..+..+||+||+|+||||+++++|+.+.|......
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 46889999999999999999999888752 34678999999999999999999997765321111
Q ss_pred ---------chhHHHhh----------hchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 79 ---------GSELVQKY----------IGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 79 ---------~~~~~~~~----------~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
|..+.... -......+++++..+.. ....|+||||+|.+. ....+
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~n 150 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFN 150 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHH
Confidence 11111000 00123346666665532 345799999988752 22233
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHH
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEK 214 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~ 214 (270)
.+...|++. ...+.+|++|+.++.+.+.+++ |. ..++|..++.++....++..++..... ....+..++..
T Consensus 151 aLLKtLEeP-----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~ 222 (598)
T PRK09111 151 ALLKTLEEP-----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA 222 (598)
T ss_pred HHHHHHHhC-----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344444332 3457777888888888877776 44 468999999999888888876654432 22335566777
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 215 MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 215 ~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
+.| +.+++.++++.+..+. ...|+.+++...+.
T Consensus 223 a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~llg 255 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDMLG 255 (598)
T ss_pred cCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHhC
Confidence 766 7888888877665432 23578877776654
No 118
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.63 E-value=5.9e-14 Score=115.90 Aligned_cols=197 Identities=21% Similarity=0.320 Sum_probs=132.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcc
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 79 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~ 79 (270)
|.++.++.++++.|++.|++.|.+-...++.. .+..++||+|++|||||+++|++..+. +..++.+..
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 45667889999999999999999888877552 467889999999999999999999753 567788776
Q ss_pred hhHHHhhhchhhHHHHHHHHHHH-hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEE
Q 024249 80 SELVQKYIGEGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 158 (270)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~a~-~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~t 158 (270)
.++.. +..++.... ...+-|||+||+. .... ....+.+..+|+.-- .....++.+.+|
T Consensus 89 ~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs----------Fe~~-d~~yk~LKs~LeGgl-e~~P~NvliyAT 147 (249)
T PF05673_consen 89 EDLGD---------LPELLDLLRDRPYKFILFCDDLS----------FEEG-DTEYKALKSVLEGGL-EARPDNVLIYAT 147 (249)
T ss_pred HHhcc---------HHHHHHHHhcCCCCEEEEecCCC----------CCCC-cHHHHHHHHHhcCcc-ccCCCcEEEEEe
Confidence 66532 333333333 3356799999953 1222 233445555554321 123457888889
Q ss_pred eCCCCCchhhhc---------------------CCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHH----HHH
Q 024249 159 TNRIDILDQALL---------------------RPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLK----KIA 212 (270)
Q Consensus 159 t~~~~~l~~~l~---------------------r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~----~la 212 (270)
+|+-..++.... =..||+-.+.|.+|+.++..+|.+.++......-+ ..+. ..|
T Consensus 148 SNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa 227 (249)
T PF05673_consen 148 SNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWA 227 (249)
T ss_pred cchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 887554433211 11289999999999999999999999876654322 1221 223
Q ss_pred HHcCCCCHHHHHHHHHH
Q 024249 213 EKMNGASGAELKAVCTE 229 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~ 229 (270)
..-.|.||+--..++..
T Consensus 228 ~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 228 LRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHcCCCCHHHHHHHHHH
Confidence 34456788776666553
No 119
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.5e-15 Score=126.41 Aligned_cols=128 Identities=25% Similarity=0.378 Sum_probs=95.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhH-----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSEL----------------------------------- 82 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~----------------------------------- 82 (270)
+|.+++|..+.|.||||+|||||+|++.+ .+..+.+.+.+...
T Consensus 24 ~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~ 103 (254)
T COG1121 24 SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRY 103 (254)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCc
Confidence 35678899999999999999999999998 23344444332210
Q ss_pred -----------------------------HHhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 83 -----------------------------VQKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 83 -----------------------------~~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
..+.++ .+.+..+.++++|...+|.+++||| |..+.|.
T Consensus 104 ~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE-----------P~~gvD~ 172 (254)
T COG1121 104 GKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE-----------PFTGVDV 172 (254)
T ss_pred ccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC-----------CcccCCH
Confidence 000111 3556778899999999999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeC
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 182 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~ 182 (270)
..+..+.++|.++. +.+.+|+++||+++.+.....+.-.+.+.+...
T Consensus 173 ~~~~~i~~lL~~l~----~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~ 219 (254)
T COG1121 173 AGQKEIYDLLKELR----QEGKTVLMVTHDLGLVMAYFDRVICLNRHLIAS 219 (254)
T ss_pred HHHHHHHHHHHHHH----HCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEec
Confidence 99999999999994 338999999999998876554433444444443
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=3.3e-14 Score=129.75 Aligned_cols=205 Identities=22% Similarity=0.331 Sum_probs=131.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe----------
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------- 73 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~---------- 73 (270)
++++|.+|++|+|.+..++.+...+..- ..+..+||+||+|+|||++++++|+.+.+.
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 6788999999999999999999888752 235678999999999999999999865432
Q ss_pred ---------------EEEEcchhHHHhhhchhhHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 74 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 74 ---------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
++.+++... .+...++.+.... ......|++|||+|.+. ....
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~ 138 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAF 138 (451)
T ss_pred ccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHH
Confidence 223332110 0112232222221 23467899999988752 1223
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~ 213 (270)
.. ++..++. ....+.+|++|+++..+.+.+.+ |+ ..++++.++.++....+...+...+. .....+..++.
T Consensus 139 n~---LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~ 210 (451)
T PRK06305 139 NS---LLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIAR 210 (451)
T ss_pred HH---HHHHhhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33 4444432 23466777888888888888877 44 35899999999888888776654432 12233567777
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
.+.| +.+++...++....+. + ..++.++++.++
T Consensus 211 ~s~g-dlr~a~~~Lekl~~~~---~-~~It~~~V~~l~ 243 (451)
T PRK06305 211 AAQG-SLRDAESLYDYVVGLF---P-KSLDPDSVAKAL 243 (451)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCcCHHHHHHHH
Confidence 7765 6666666666543321 1 236666665443
No 121
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=3.7e-14 Score=133.15 Aligned_cols=205 Identities=20% Similarity=0.304 Sum_probs=136.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 73 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------- 73 (270)
.++++|.+|++|+|.+..++.|...+..- ..+..+||+||+|+||||+++++|+.+.|.
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 36889999999999999999999888752 245678999999999999999999876542
Q ss_pred ---------------EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 74 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 74 ---------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
++.+++.. ......++++...+.. ....|+||||+|.+. ....
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~ 136 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAF 136 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHH
Confidence 22332211 1122345555554432 234699999988752 2233
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 213 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~ 213 (270)
+.+...|++ ....+.+|++|++++.+.+.+++ |. ..++|..++.++-...+...++..... .+..+..++.
T Consensus 137 naLLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~ 208 (576)
T PRK14965 137 NALLKTLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVAR 208 (576)
T ss_pred HHHHHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 444444443 23467788888888999888876 33 357888888888877777766554332 2334667777
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 214 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 214 ~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
.+.| +.+++.+++..+..+. + ..++.+|+...
T Consensus 209 ~a~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 209 KGDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 8776 6677777776554433 1 24677776554
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=5.3e-14 Score=131.19 Aligned_cols=204 Identities=22% Similarity=0.296 Sum_probs=136.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe----------
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------- 73 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~---------- 73 (270)
++++|.+|++|+|.+..++.|...+... ..+..+||+||+|+||||+++++|+.+.+.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 4688999999999999999999988752 235679999999999999999999876542
Q ss_pred --------------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 74 --------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 74 --------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
++.+++.. ......++++...+. .....|++|||+|.+. ..
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~--- 134 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NS--- 134 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HH---
Confidence 22222211 011223444443322 3456799999988752 11
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHH
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEK 214 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~ 214 (270)
.+..++..++. ....+++|++|+++..+.+.+++ |+ ..++|..++.++....++..+...... ....+..++..
T Consensus 135 a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~ 209 (563)
T PRK06647 135 AFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK 209 (563)
T ss_pred HHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 23344555542 23567788888888888888877 44 357899999999988888776554332 22335667777
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 215 MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 215 ~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
+.| +.+++..++..+..++ ...++.+++..+
T Consensus 210 s~G-dlR~alslLdklis~~----~~~It~e~V~~l 240 (563)
T PRK06647 210 STG-SVRDAYTLFDQVVSFS----DSDITLEQIRSK 240 (563)
T ss_pred cCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHH
Confidence 766 7788878777654332 234666666654
No 123
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.62 E-value=2.3e-15 Score=123.56 Aligned_cols=113 Identities=27% Similarity=0.410 Sum_probs=89.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.+|+.+.|.||+|||||||++.+++ .+..+.+.+++.++.
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv 104 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHH
Confidence 46789999999999999999999999996 455666666553210
Q ss_pred -------------------------------H-hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 84 -------------------------------Q-KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 84 -------------------------------~-~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
. +++. .++++.+.++++|....|.+|+.|| |+++.
T Consensus 105 ~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE-----------PTgnL 173 (226)
T COG1136 105 ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE-----------PTGNL 173 (226)
T ss_pred HhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC-----------ccccC
Confidence 0 0111 2456678888999999999999999 99999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
|+.....+.+++..+. .+.+.+||+.||++....
T Consensus 174 D~~t~~~V~~ll~~~~---~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 174 DSKTAKEVLELLRELN---KERGKTIIMVTHDPELAK 207 (226)
T ss_pred ChHHHHHHHHHHHHHH---HhcCCEEEEEcCCHHHHH
Confidence 9999999999999884 455889999999866443
No 124
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.62 E-value=3.1e-14 Score=131.37 Aligned_cols=218 Identities=17% Similarity=0.229 Sum_probs=142.2
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccc----c-------------ChHHHHh----cCCCCCceEEEEcCCCchH
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPI----K-------------HPELFES----LGIAQPKGVLLYGPPGTGK 59 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l----~-------------~~~~~~~----~~~~~~~~ilL~Gp~GtGK 59 (270)
+||+++++..|.|+.|-+..=..+..||...- . ..+.+.. .+-++.+.+||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 69999999999999999999999998886531 1 0111111 0123346688999999999
Q ss_pred HHHHHHHHHhcCCeEEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 60 TLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 60 Ttl~~~ia~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
||||+.||++.|..++.|++++=.+ .......+..+++.-. ..+|..|++||||- .......
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG------------a~~~~Vd 405 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG------------APRAAVD 405 (877)
T ss_pred hHHHHHHHHhcCceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccC------------CcHHHHH
Confidence 9999999999999999999987322 1122233333333322 25799999999874 2244556
Q ss_pred HHHHHHHhhc----CCcC--C----------CCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhcc
Q 024249 136 TMLELLNQLD----GFEA--S----------NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR 199 (270)
Q Consensus 136 ~l~~~l~~l~----~~~~--~----------~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~ 199 (270)
++..++..-. +-.. . -...||+++|+.. .|+++.-.-|.+.+.|.+|......+=|+..+.+
T Consensus 406 vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r 483 (877)
T KOG1969|consen 406 VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHR 483 (877)
T ss_pred HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhh
Confidence 6666665211 1000 0 0245999999754 4555432247778899988887766666666655
Q ss_pred CCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 024249 200 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 237 (270)
Q Consensus 200 ~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~ 237 (270)
..+ ..|...|+.+++ ++..||...+..-.+.+...
T Consensus 484 E~m--r~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 484 ENM--RADSKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred hcC--CCCHHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 443 245555555543 45668988888877776543
No 125
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.61 E-value=3.2e-15 Score=117.70 Aligned_cols=114 Identities=26% Similarity=0.464 Sum_probs=91.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+++++.+.|+||||+||||++|.|.++ +..+.+.+++.++..
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 456889999999999999999999999863 455666665544310
Q ss_pred ---------------------hhhc------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ---------------------KYIG------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ---------------------~~~~------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.++| .+.++.+..+++|.-++|.+|+.|| |+++.|+
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE-----------PTGNLDp 170 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE-----------PTGNLDP 170 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC-----------CCCCCCh
Confidence 0000 3456778888999999999999999 9999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
.....+..++++++ ..+.+|+++||+.+.++..
T Consensus 171 ~~s~~im~lfeein----r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 171 DLSWEIMRLFEEIN----RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHHHHHHh----hcCcEEEEEeccHHHHHhc
Confidence 99999999999985 4589999999998777653
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=5.9e-14 Score=131.75 Aligned_cols=215 Identities=15% Similarity=0.237 Sum_probs=133.9
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEE-------
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR------- 76 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~------- 76 (270)
++++|.+|++|+|.+..++.|...+..- .-+..+||+||+|+||||+|+++|+.+.|..-.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 5789999999999999999998877652 345679999999999999999999987662100
Q ss_pred ---Ecch------hHHH-h------hhc---hhhHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 77 ---VSGS------ELVQ-K------YIG---EGSRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 77 ---i~~~------~~~~-~------~~~---~~~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
-.|. .+.. . ..+ .....++.+.+.+ ......|+||||+|.+. ...
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~~a 143 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------TAA 143 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------HHH
Confidence 0010 0000 0 000 1123444444443 22445799999988752 122
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHH
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIA 212 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la 212 (270)
.+ .++..++. .....++|++|++...+.+.+.+++ ..++|..++.++-...+...+..... ..+..+..++
T Consensus 144 ~n---aLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~SRc---~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 144 FN---AFLKTLEE--PPPHAIFIFATTELHKIPATIASRC---QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HH---HHHHHHhC--CCCCeEEEEEeCChhhhhHHHHhhc---eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33 34444432 1234666777777788877777633 46899999998888777766554332 2333456777
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHH
Q 024249 213 EKMNGASGAELKAVCTEAGMFALR-ERRIHVTQEDFEMAV 251 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a~~~a~~-~~~~~i~~~d~~~a~ 251 (270)
..+.| +.+++...++....++.. .....|+.+++...+
T Consensus 216 ~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 77765 666666666655444311 123467777776654
No 127
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=4.4e-15 Score=124.24 Aligned_cols=140 Identities=23% Similarity=0.352 Sum_probs=101.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHHh--------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQK-------------------------------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~~-------------------------------- 85 (270)
+|.+++++.+.|.||||||||||+|++++- +..+.+.+++.++...
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence 456788999999999999999999999984 4467777776543110
Q ss_pred ---------------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 86 ---------------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 86 ---------------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.+. .++++.+.++++|.+.+|.|+++|| |++..|
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE-----------PTs~LD 170 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE-----------PTSHLD 170 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC-----------CccccC
Confidence 000 3456778888999999999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh-----hcCCCCcceEEEeCCCCHHHHHHHHHHh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA-----LLRPGRIDRKIEFPNPNEESRLDILKIH 196 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~-----l~r~~r~~~~i~~~~p~~~~r~~il~~~ 196 (270)
...+-.+.+++..+. .+.+.+||+++|+++..-.. +.+.| ..+....|..---.+.++..
T Consensus 171 i~~Q~evl~ll~~l~---~~~~~tvv~vlHDlN~A~ryad~~i~lk~G---~i~a~G~p~evlT~e~l~~V 235 (258)
T COG1120 171 IAHQIEVLELLRDLN---REKGLTVVMVLHDLNLAARYADHLILLKDG---KIVAQGTPEEVLTEENLREV 235 (258)
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHHHhCCEEEEEECC---eEEeecCcchhcCHHHHHHH
Confidence 999988999998884 45689999999997654322 22333 23455666554444455443
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=6.9e-14 Score=131.79 Aligned_cols=205 Identities=17% Similarity=0.254 Sum_probs=133.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeE--------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF-------- 74 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~-------- 74 (270)
.++++|.+|++|+|.+..++.|...+... ..+..+||+||+|+||||+++++|+.+.|..
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 47899999999999999999998888752 2356689999999999999999998765421
Q ss_pred -----------------EEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 75 -----------------IRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 75 -----------------i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
+.++... ......++++...+. .....|+||||+|.+. ...
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a 136 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAA 136 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHH
Confidence 1122110 011223444444332 2345699999988752 122
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHH
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 212 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la 212 (270)
.+. ++..++. .....++|+++++.+.+.+.+.+ |+ ..++|+.++..+...+++..+...... ....+..++
T Consensus 137 ~na---LLk~LEe--pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La 208 (585)
T PRK14950 137 FNA---LLKTLEE--PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA 208 (585)
T ss_pred HHH---HHHHHhc--CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 333 4444432 22456777778877777777766 33 357899999998888888776554331 222356777
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 213 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
..+.| +.+++.+.++....+ ....++.++++..
T Consensus 209 ~~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 209 RAATG-SMRDAENLLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 77766 777777777754332 2335777776554
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.60 E-value=1.8e-13 Score=129.32 Aligned_cols=220 Identities=22% Similarity=0.343 Sum_probs=135.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeE
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTF 74 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~ 74 (270)
.+++.+|++++|.+..++.+.+.+..+ .+..++|+|||||||||+++++++.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 467889999999999998877665432 35679999999999999999998643 4578
Q ss_pred EEEcchhHH-------HhhhchhhH----HHHHHHHH----------HHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 75 IRVSGSELV-------QKYIGEGSR----MVRELFVM----------AREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 75 i~i~~~~~~-------~~~~~~~~~----~~~~~~~~----------a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
+.++|..+. ....+.... ..+..+.. .......+|||||++. .+...
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~------------Ld~~~ 281 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGE------------LDPLL 281 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEecccc------------CCHHH
Confidence 999887642 111111100 00111110 0112345999999765 45566
Q ss_pred HHHHHHHHHhhc-----C-C-----------------cCCCCeEEEE-EeCCCCCchhhhcCCCCcceEEEeCCCCHHHH
Q 024249 134 QRTMLELLNQLD-----G-F-----------------EASNKIKVLM-ATNRIDILDQALLRPGRIDRKIEFPNPNEESR 189 (270)
Q Consensus 134 ~~~l~~~l~~l~-----~-~-----------------~~~~~~~vi~-tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r 189 (270)
+..+..+++.-. + + .....+++|+ ||++++.+++++++ |+. .+.+++++.++.
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi 358 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHH
Confidence 667777775421 0 0 0111244444 45678888888877 775 578999999999
Q ss_pred HHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHH
Q 024249 190 LDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE--------RRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 190 ~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~--------~~~~i~~~d~~~a~~~~ 254 (270)
.+|++..+..... ..+.-+..|+..+. .++...+.+..+...+..+ ....|+.+|+++++..-
T Consensus 359 ~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 359 ALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9999988765432 12222344444432 4444445555554333211 23478999999998754
No 130
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.59 E-value=1.2e-13 Score=114.59 Aligned_cols=198 Identities=22% Similarity=0.360 Sum_probs=117.9
Q ss_pred CCCCcccc-cCc-HH-HHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHh-----cCCeEEEEc
Q 024249 7 PDSTYDMI-GGL-DQ-QIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVS 78 (270)
Q Consensus 7 ~~~~~~~i-~G~-~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~-----~~~~~i~i~ 78 (270)
|..+|++. .|- ++ ...........+ + .....+.|+||+|+|||+|+++++++ .+..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 56788887 353 22 233333333332 1 12235899999999999999999874 467789999
Q ss_pred chhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEE
Q 024249 79 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 158 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~t 158 (270)
+.++...+..........-|.... ....+|+||+++.+.. ....+..+..+++.+. ..++. +|+|
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~----------~~~~q~~lf~l~n~~~---~~~k~-li~t 136 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAG----------KQRTQEELFHLFNRLI---ESGKQ-LILT 136 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTT----------HHHHHHHHHHHHHHHH---HTTSE-EEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcC----------chHHHHHHHHHHHHHH---hhCCe-EEEE
Confidence 988876654433221111222222 2557999999998743 2456777888888773 33344 5555
Q ss_pred e-CCCCCc---hhhhcCCCCc--ceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q 024249 159 T-NRIDIL---DQALLRPGRI--DRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAG 231 (270)
Q Consensus 159 t-~~~~~l---~~~l~r~~r~--~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~ 231 (270)
+ ..|..+ ++.+.+ || ...+.+.+|+.+.|..|++..+...... ++.-...++...++ +.++|..++.+-.
T Consensus 137 s~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 137 SDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp ESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred eCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 5 455554 445555 54 4578899999999999999887765443 22224556666544 7777777777655
Q ss_pred HH
Q 024249 232 MF 233 (270)
Q Consensus 232 ~~ 233 (270)
.+
T Consensus 214 ~~ 215 (219)
T PF00308_consen 214 AY 215 (219)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 131
>PRK05642 DNA replication initiation factor; Validated
Probab=99.59 E-value=4.2e-13 Score=112.61 Aligned_cols=214 Identities=17% Similarity=0.195 Sum_probs=129.3
Q ss_pred ccccCCCCCccccc-CcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEE
Q 024249 2 KVEKVPDSTYDMIG-GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRV 77 (270)
Q Consensus 2 ~~~~~~~~~~~~i~-G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i 77 (270)
++.-.|..+|++.. |-+ ....+++..+.... +-.....++|+||+|+|||+|+++++++ .+..++++
T Consensus 9 ~~~~~~~~tfdnF~~~~~---~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~ 79 (234)
T PRK05642 9 GVRLRDDATFANYYPGAN---AAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYL 79 (234)
T ss_pred CCCCCCcccccccCcCCh---HHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEe
Confidence 45556678898875 432 22333332221110 0112366899999999999999999864 35677888
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEE
Q 024249 78 SGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~ 157 (270)
+..++.... ..++.... ...+|+|||++.+.+ .+.....+..+++.+. .++..+++.
T Consensus 80 ~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~----------~~~~~~~Lf~l~n~~~---~~g~~ilit 136 (234)
T PRK05642 80 PLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAG----------KADWEEALFHLFNRLR---DSGRRLLLA 136 (234)
T ss_pred eHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcC----------ChHHHHHHHHHHHHHH---hcCCEEEEe
Confidence 887765431 12222222 235899999987632 2344566777777652 333444444
Q ss_pred EeCCCCCc---hhhhcCCCCc--ceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q 024249 158 ATNRIDIL---DQALLRPGRI--DRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAG 231 (270)
Q Consensus 158 tt~~~~~l---~~~l~r~~r~--~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~ 231 (270)
++..+..+ .+.+.+ || ...+.+.+|+.+++..+++........ .++.-++.++...+| +.+.+..++..-.
T Consensus 137 s~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~ 213 (234)
T PRK05642 137 ASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLD 213 (234)
T ss_pred CCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 44445443 456666 55 566788999999999999855444322 223335667777765 7788887777765
Q ss_pred HHHHHhcCCCCCHHHHHHHH
Q 024249 232 MFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 232 ~~a~~~~~~~i~~~d~~~a~ 251 (270)
..++... ..+|..-+.+++
T Consensus 214 ~~~l~~~-~~it~~~~~~~L 232 (234)
T PRK05642 214 QASLQAQ-RKLTIPFLKETL 232 (234)
T ss_pred HHHHHcC-CcCCHHHHHHHh
Confidence 5454432 457766665554
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.1e-13 Score=127.39 Aligned_cols=189 Identities=19% Similarity=0.283 Sum_probs=126.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 73 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------- 73 (270)
.+++++.+|++++|.+..++.|..++..- .-+..+||+||+|+|||++++++|+.+.|.
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 46889999999999999999999888762 124578999999999999999999977652
Q ss_pred -----------------EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 74 -----------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 74 -----------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
++.++.. .......+++++..+.. ....|++|||+|.+- ..
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~ 136 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TA 136 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HH
Confidence 1112111 11233466777766542 345799999988762 22
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHH
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKI 211 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l 211 (270)
... .++..++. ....+++|++|++++.+.+.+++ |+ ..++|+.++.++-...+.....+.... ....+..+
T Consensus 137 a~n---aLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~L 208 (620)
T PRK14948 137 AFN---ALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLV 208 (620)
T ss_pred HHH---HHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 233 44444432 23457777888888888887776 43 457888888887777776665543321 22236677
Q ss_pred HHHcCCCCHHHHHHHHHHH
Q 024249 212 AEKMNGASGAELKAVCTEA 230 (270)
Q Consensus 212 a~~~~g~~~~dl~~l~~~a 230 (270)
++.+.| ..+++..+++..
T Consensus 209 a~~s~G-~lr~A~~lLekl 226 (620)
T PRK14948 209 AQRSQG-GLRDAESLLDQL 226 (620)
T ss_pred HHHcCC-CHHHHHHHHHHH
Confidence 777766 446666666643
No 133
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.56 E-value=5.4e-13 Score=113.86 Aligned_cols=190 Identities=21% Similarity=0.305 Sum_probs=117.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh------HHHhhhchhhHH-HHH-------------------HH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE------LVQKYIGEGSRM-VRE-------------------LF 98 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~------~~~~~~~~~~~~-~~~-------------------~~ 98 (270)
.+..++|.||||||||++++++|...+.+++.+++.. +.+.+.+..... ... .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3677999999999999999999999999999887643 333322111110 010 11
Q ss_pred HHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc----CCc-------CCCCeEEEEEeCCCC----
Q 024249 99 VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD----GFE-------ASNKIKVLMATNRID---- 163 (270)
Q Consensus 99 ~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~----~~~-------~~~~~~vi~tt~~~~---- 163 (270)
..|.. .+.+|+|||++.+ ++..+..+..++++-. +.. ...+..||+|+|...
T Consensus 100 ~~A~~-~g~~lllDEi~r~------------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAVR-EGFTLVYDEFTRS------------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHH-cCCEEEEcchhhC------------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22222 3469999998763 3456667777775411 000 113567899999652
Q ss_pred -CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHH---HHHHH---cC---CCCHHHHHHHHHHHHHH
Q 024249 164 -ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLK---KIAEK---MN---GASGAELKAVCTEAGMF 233 (270)
Q Consensus 164 -~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~---~la~~---~~---g~~~~dl~~l~~~a~~~ 233 (270)
.+++++.+ || ..+.++.|+.++-.+|++.+.. . .+...+ .++.. .+ ..+.+..-.+++.+..
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~-~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~- 238 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---V-AEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQ- 238 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---C-CHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHH-
Confidence 45778887 77 5689999999999999987642 1 111111 12211 11 2333444444443333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhhh
Q 024249 234 ALRERRIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 234 a~~~~~~~i~~~d~~~a~~~~~~~ 257 (270)
...+..++++||...+..++..
T Consensus 239 --~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 239 --QDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred --cCCCCCCCcHHHHHHHHHHhcc
Confidence 3457789999999999988764
No 134
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.54 E-value=2.3e-14 Score=113.73 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=88.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH--------hhh-----chhhHHHHHHHHHHHhc
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------KYI-----GEGSRMVRELFVMAREH 104 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------~~~-----~~~~~~~~~~~~~a~~~ 104 (270)
+|.+.++..+.|.||+|+|||||++.|++. +..+.+.+++.++.. ... -...++.+-.+.+|...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 356889999999999999999999999985 346667766544321 111 12345677788889999
Q ss_pred CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 105 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 105 ~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+|.++++|| |+++.|......+.+++..+. ..+.++|++||+.+.+..
T Consensus 100 ~p~illlDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 100 NARLLILDE-----------PTAALTPAEVERLFKVIRRLR----AQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CCCEEEEEC-----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 999999999 889999999999999998873 236789999999876654
No 135
>PRK06620 hypothetical protein; Validated
Probab=99.54 E-value=1.1e-12 Score=108.48 Aligned_cols=200 Identities=15% Similarity=0.181 Sum_probs=120.0
Q ss_pred ccccCCCCCcccc-cCcHH--HHHHHHHHhhccccChHHHHhcCCCC-CceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 2 KVEKVPDSTYDMI-GGLDQ--QIKEIKEVIELPIKHPELFESLGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 2 ~~~~~~~~~~~~i-~G~~~--~~~~l~~~l~~~l~~~~~~~~~~~~~-~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
+.-..|..+|++. +|-.+ ....+.++...+ +..+ ...++|+||+|||||+|++++++..+..++
T Consensus 6 ~~~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~-- 73 (214)
T PRK06620 6 RFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGF----------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII-- 73 (214)
T ss_pred CCCCCCCCCchhhEecccHHHHHHHHHHHHHcc----------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--
Confidence 3445667788885 34322 334444433211 2222 267999999999999999999987765322
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEE
Q 024249 78 SGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~ 157 (270)
..... . ... .....+|+|||+|.+ ....+..+++.+. .+++.+++.
T Consensus 74 ~~~~~-----~------~~~-----~~~~d~lliDdi~~~---------------~~~~lf~l~N~~~---e~g~~ilit 119 (214)
T PRK06620 74 KDIFF-----N------EEI-----LEKYNAFIIEDIENW---------------QEPALLHIFNIIN---EKQKYLLLT 119 (214)
T ss_pred chhhh-----c------hhH-----HhcCCEEEEeccccc---------------hHHHHHHHHHHHH---hcCCEEEEE
Confidence 21111 0 011 123468999999843 0124556665553 334455555
Q ss_pred EeCCCCCch-hhhcCCCCc--ceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 024249 158 ATNRIDILD-QALLRPGRI--DRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMF 233 (270)
Q Consensus 158 tt~~~~~l~-~~l~r~~r~--~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~ 233 (270)
++..+..+. +.+++ |+ ...+.+.+|+.+.+..+++.......+ .++.-.+.|+....| +.+.+..++......
T Consensus 120 s~~~p~~l~l~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~ 196 (214)
T PRK06620 120 SSDKSRNFTLPDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYF 196 (214)
T ss_pred cCCCccccchHHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 554444421 55665 55 446899999999999999887664332 233346678888766 777777777775443
Q ss_pred HHHhcCCCCCHHHHHHHH
Q 024249 234 ALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 234 a~~~~~~~i~~~d~~~a~ 251 (270)
+... ...||.+.+.+++
T Consensus 197 ~~~~-~~~it~~~~~~~l 213 (214)
T PRK06620 197 ALIS-KRKITISLVKEVL 213 (214)
T ss_pred HHHc-CCCCCHHHHHHHh
Confidence 4333 3468887777664
No 136
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.53 E-value=1.1e-13 Score=126.20 Aligned_cols=198 Identities=21% Similarity=0.291 Sum_probs=141.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeE--E---EEc
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF--I---RVS 78 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~--i---~i~ 78 (270)
.+++|.+|++++|.+...+.|...+..- .-...++++||.|+||||++|.+|+.++|.- . ...
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 3688999999999999999999998873 2356689999999999999999998776542 1 111
Q ss_pred ch---hHHHh----------hhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHH
Q 024249 79 GS---ELVQK----------YIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 141 (270)
Q Consensus 79 ~~---~~~~~----------~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l 141 (270)
|. .+... -...+-..++++.+.+. .....|.+|||++-|. ...+..+|
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALL 140 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALL 140 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHh
Confidence 11 11100 01123345666666653 3456799999987652 34677888
Q ss_pred HhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCC-CHHHHHHHcCCCCH
Q 024249 142 NQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI-DLKKIAEKMNGASG 220 (270)
Q Consensus 142 ~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~~~ 220 (270)
+.++. ....+.+|++|.+++.++.-++++. ..+.|..-+.++-...|...+.+....-+. -+..+|...+| +.
T Consensus 141 KTLEE--PP~hV~FIlATTe~~Kip~TIlSRc---q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~ 214 (515)
T COG2812 141 KTLEE--PPSHVKFILATTEPQKIPNTILSRC---QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SL 214 (515)
T ss_pred ccccc--CccCeEEEEecCCcCcCchhhhhcc---ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Ch
Confidence 88863 4457889999999999999887633 235677778888888888777665543332 35677888877 88
Q ss_pred HHHHHHHHHHHHHH
Q 024249 221 AELKAVCTEAGMFA 234 (270)
Q Consensus 221 ~dl~~l~~~a~~~a 234 (270)
+|...++.++....
T Consensus 215 RDalslLDq~i~~~ 228 (515)
T COG2812 215 RDALSLLDQAIAFG 228 (515)
T ss_pred hhHHHHHHHHHHcc
Confidence 99999999887654
No 137
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.53 E-value=6.6e-13 Score=119.47 Aligned_cols=233 Identities=25% Similarity=0.336 Sum_probs=137.4
Q ss_pred cccCcHHHHHHHHHHhhccccChHHHHhc--CC-CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH-hhhc
Q 024249 13 MIGGLDQQIKEIKEVIELPIKHPELFESL--GI-AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG 88 (270)
Q Consensus 13 ~i~G~~~~~~~l~~~l~~~l~~~~~~~~~--~~-~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~-~~~~ 88 (270)
.|+|++..++.+...+..++.+-...... .+ .+..++||+||||||||++++++|...+.+++.++++.+.. .|.|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 48999999999987776543322110000 11 23577999999999999999999999999999999887643 3444
Q ss_pred hh-hHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCCCCCCCC---hHHHHHHHHHHHhhc------C--CcCCCC
Q 024249 89 EG-SRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGD---SEVQRTMLELLNQLD------G--FEASNK 152 (270)
Q Consensus 89 ~~-~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~~~~~~~---~~~~~~l~~~l~~l~------~--~~~~~~ 152 (270)
.. +..+..++..+ ....+.||||||+|.+...+.. ++...| ...++.|+++|+.-. + ......
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~-~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~ 230 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSEN-PSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQE 230 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCC-CCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCC
Confidence 42 22333333321 2346789999999999876321 111222 235666777775310 0 001112
Q ss_pred eEEEEEeCCCC-------C---------------------------------------------chhhhcCCCCcceEEE
Q 024249 153 IKVLMATNRID-------I---------------------------------------------LDQALLRPGRIDRKIE 180 (270)
Q Consensus 153 ~~vi~tt~~~~-------~---------------------------------------------l~~~l~r~~r~~~~i~ 180 (270)
.++|.|+|-.- . +.|.+ .||++..+.
T Consensus 231 ~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf--lgRld~iv~ 308 (412)
T PRK05342 231 FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF--IGRLPVVAT 308 (412)
T ss_pred eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH--hCCCCeeee
Confidence 34555544300 0 01111 148888899
Q ss_pred eCCCCHHHHHHHHHH----hhccCC---CCCCC-------CHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHhc------
Q 024249 181 FPNPNEESRLDILKI----HSRRMN---LMRGI-------DLKKIAEK--MNGASGAELKAVCTEAGMFALRER------ 238 (270)
Q Consensus 181 ~~~p~~~~r~~il~~----~~~~~~---~~~~~-------~~~~la~~--~~g~~~~dl~~l~~~a~~~a~~~~------ 238 (270)
|.+.+.++...|+.. ..+++. ...++ -+..|++. ..++-++.|+.++++.....+.+-
T Consensus 309 f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~~~ 388 (412)
T PRK05342 309 LEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSREDV 388 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccccCCC
Confidence 999999999999862 222111 01111 24566765 345667888888777766555432
Q ss_pred -CCCCCHHHHH
Q 024249 239 -RIHVTQEDFE 248 (270)
Q Consensus 239 -~~~i~~~d~~ 248 (270)
...|+.+.+.
T Consensus 389 ~~v~I~~~~v~ 399 (412)
T PRK05342 389 EKVVITKEVVE 399 (412)
T ss_pred ceEEECHHHhc
Confidence 1345666554
No 138
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.53 E-value=4.3e-13 Score=103.22 Aligned_cols=140 Identities=40% Similarity=0.686 Sum_probs=91.2
Q ss_pred CcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHHhhhchhhH
Q 024249 16 GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGSR 92 (270)
Q Consensus 16 G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~~~~~~~~~ 92 (270)
|.+..++.+...+... .+..++++||+|+|||++++.++... +.+++.+++.............
T Consensus 2 ~~~~~~~~i~~~~~~~-------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALELP-------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 5566666666665542 46789999999999999999999987 7888888887765443222111
Q ss_pred H---HHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc-CCCCeEEEEEeCCCC--Cch
Q 024249 93 M---VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-ASNKIKVLMATNRID--ILD 166 (270)
Q Consensus 93 ~---~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~vi~tt~~~~--~l~ 166 (270)
. ............+.+|++||++.+ .......+...+....... ...++.+|++++... .++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSL------------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhh------------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 1 122233445567899999998764 1223344555555542110 135788999999877 566
Q ss_pred hhhcCCCCcceEEEeC
Q 024249 167 QALLRPGRIDRKIEFP 182 (270)
Q Consensus 167 ~~l~r~~r~~~~i~~~ 182 (270)
+.+.. |++..+.++
T Consensus 137 ~~~~~--r~~~~i~~~ 150 (151)
T cd00009 137 RALYD--RLDIRIVIP 150 (151)
T ss_pred hhHHh--hhccEeecC
Confidence 66655 777667665
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=8.6e-13 Score=124.45 Aligned_cols=193 Identities=19% Similarity=0.278 Sum_probs=128.8
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe--------
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 73 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~-------- 73 (270)
+-++++|.+|++|+|.+..++.|...+..- ..+..+||+||+|+||||+++++|+.+.|.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 357889999999999999999999988752 245668999999999999999999876542
Q ss_pred -----------------EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 74 -----------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 74 -----------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
++.+++.+ ......++.++..+.. ....|++|||+|.+. ..
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~ 136 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QA 136 (614)
T ss_pred CCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HH
Confidence 22222211 0112345555554432 234699999988752 22
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHH
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKI 211 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l 211 (270)
....|...|+.. ....++|++|+....+-+.+++++ ..++|..++.++-...++..+...... ....+..+
T Consensus 137 a~naLLK~LEep-----p~~tifIL~tt~~~kIl~tI~SRc---~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~L 208 (614)
T PRK14971 137 AFNAFLKTLEEP-----PSYAIFILATTEKHKILPTILSRC---QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVI 208 (614)
T ss_pred HHHHHHHHHhCC-----CCCeEEEEEeCCchhchHHHHhhh---heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344444444432 235667777777788888887733 458899999998888888776655432 22236677
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 024249 212 AEKMNGASGAELKAVCTEAGMF 233 (270)
Q Consensus 212 a~~~~g~~~~dl~~l~~~a~~~ 233 (270)
++.+.| +.+++...++....+
T Consensus 209 a~~s~g-dlr~al~~Lekl~~y 229 (614)
T PRK14971 209 AQKADG-GMRDALSIFDQVVSF 229 (614)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 888755 667766666654433
No 140
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.52 E-value=2.8e-13 Score=116.44 Aligned_cols=212 Identities=25% Similarity=0.389 Sum_probs=132.7
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---EEEEcch
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---FIRVSGS 80 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~---~i~i~~~ 80 (270)
|+.+|.+++|.+|+++...+ ...+...++ -..-..++|+||||||||||++.|+.....+ ++.++..
T Consensus 130 ermRPktL~dyvGQ~hlv~q-~gllrs~ie---------q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQ-DGLLRSLIE---------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hhcCcchHHHhcchhhhcCc-chHHHHHHH---------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 45678888999999876644 222222211 1223458999999999999999999866554 5555543
Q ss_pred hHHHhhhchhhHHHHHHHHHHHh-----cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEE
Q 024249 81 ELVQKYIGEGSRMVRELFVMARE-----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 155 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~-----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v 155 (270)
.- ..+.++.+|+.+.. ....||||||++.+-... +.. +|-.+ .+..+++
T Consensus 200 ~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ------------QD~---fLP~V----E~G~I~l 253 (554)
T KOG2028|consen 200 NA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ------------QDT---FLPHV----ENGDITL 253 (554)
T ss_pred cc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh------------hhc---cccee----ccCceEE
Confidence 32 23456777777654 356899999998863221 111 12122 3456778
Q ss_pred EEEe-CCCC-CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhc------c----CCC----CCCCCHHHHHHHcCCCC
Q 024249 156 LMAT-NRID-ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR------R----MNL----MRGIDLKKIAEKMNGAS 219 (270)
Q Consensus 156 i~tt-~~~~-~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~------~----~~~----~~~~~~~~la~~~~g~~ 219 (270)
|++| .+|. .+..++++++|+ +.+...+...-..||.+-.. + ++. ..+--++.++..+.|-.
T Consensus 254 IGATTENPSFqln~aLlSRC~V---fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRCRV---FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EecccCCCccchhHHHHhccce---eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 8765 4444 467788875554 56666777777777765322 1 111 11122567888999887
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHH
Q 024249 220 GAELKAVCTEAGMFALRER---RIHVTQEDFEMAVAKV 254 (270)
Q Consensus 220 ~~dl~~l~~~a~~~a~~~~---~~~i~~~d~~~a~~~~ 254 (270)
-+.|..|--.+.+...+.+ +..++.+|+.+.+++-
T Consensus 331 R~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 331 RAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 7777666555555555544 4678889998888653
No 141
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.52 E-value=2.4e-14 Score=124.99 Aligned_cols=112 Identities=25% Similarity=0.340 Sum_probs=88.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~~--------------------------------- 84 (270)
++.+.+++.+.|.|||||||||++|+||+ .++.+.|.+++.++..
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 45688899999999999999999999998 4566777766654310
Q ss_pred ---------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 85 ---------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 85 ---------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
.++. .+.++.+.++++|....|.++++|| |.+++|...+.
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE-----------PlSaLD~kLR~ 173 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE-----------PLSALDAKLRE 173 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC-----------cccchhHHHHH
Confidence 1111 3456678888899999999999999 88999999998
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.+..-+..+. .+.++++|..||+.++.
T Consensus 174 ~mr~Elk~lq---~~~giT~i~VTHDqeEA 200 (352)
T COG3842 174 QMRKELKELQ---RELGITFVYVTHDQEEA 200 (352)
T ss_pred HHHHHHHHHH---HhcCCeEEEEECCHHHH
Confidence 8888887773 45689999999997643
No 142
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.8e-14 Score=115.99 Aligned_cols=118 Identities=25% Similarity=0.352 Sum_probs=92.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.+|..+.|+|++|||||||++++++ .+..+.+.+++..+.
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHh
Confidence 45688999999999999999999999997 455566666653211
Q ss_pred -----------------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 84 -----------------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 84 -----------------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
..++. .+++..+-++++|....|.+|++|| |++.+|..
T Consensus 107 Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE-----------ptSaLD~s 175 (252)
T COG1124 107 EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE-----------PTSALDVS 175 (252)
T ss_pred hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC-----------chhhhcHH
Confidence 11111 3456677888889999999999999 88999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcC
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLR 171 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r 171 (270)
.+..+..++.++. ...+.++|+.||+...+.....|
T Consensus 176 iQa~IlnlL~~l~---~~~~lt~l~IsHdl~~v~~~cdR 211 (252)
T COG1124 176 VQAQILNLLLELK---KERGLTYLFISHDLALVEHMCDR 211 (252)
T ss_pred HHHHHHHHHHHHH---HhcCceEEEEeCcHHHHHHHhhh
Confidence 9999999998884 55689999999998887765443
No 143
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.52 E-value=8.3e-14 Score=113.72 Aligned_cols=114 Identities=25% Similarity=0.366 Sum_probs=90.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHH-----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELV----------------------------------- 83 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~----------------------------------- 83 (270)
|.+++++.+.+.||||||||||+|.|.+ .+..+.+.+.+.++.
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf 108 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence 4578899999999999999999999998 356677777665431
Q ss_pred -------------------------------Hhhhch--hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 84 -------------------------------QKYIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 84 -------------------------------~~~~~~--~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..++.+ +.-..+..+++|.+..|.+||+|| |+++.|
T Consensus 109 plre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DE-----------PtsGLD 177 (263)
T COG1127 109 PLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE-----------PTSGLD 177 (263)
T ss_pred ehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecC-----------CCCCCC
Confidence 011112 223457788899999999999999 999999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+-....+.+++..++ ..-+.++|+.||+.+.+-..
T Consensus 178 PI~a~~~~~LI~~L~---~~lg~T~i~VTHDl~s~~~i 212 (263)
T COG1127 178 PISAGVIDELIRELN---DALGLTVIMVTHDLDSLLTI 212 (263)
T ss_pred cchHHHHHHHHHHHH---HhhCCEEEEEECChHHHHhh
Confidence 999999999999985 34589999999998877554
No 144
>PRK09087 hypothetical protein; Validated
Probab=99.52 E-value=1.4e-12 Score=108.75 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=108.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
...++|+||+|||||+|+++++...+.. +++...+..... .... ..+|+|||++.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~---~~~l~iDDi~~~~------- 100 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAA---EGPVLIEDIDAGG------- 100 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhh---cCeEEEECCCCCC-------
Confidence 3458999999999999999999876554 444333222111 1111 1489999998651
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC-CCCCc---hhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCC
Q 024249 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN-RIDIL---DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN 201 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~-~~~~l---~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~ 201 (270)
.+ ...+..+++.+. .. +..+|+|++ .+..+ .+.++++-.-...+++.+|+.+.|.++++..+....
T Consensus 101 ---~~---~~~lf~l~n~~~---~~-g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 101 ---FD---ETGLFHLINSVR---QA-GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred ---CC---HHHHHHHHHHHH---hC-CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 11 234666776653 22 344555554 33332 455665222246789999999999999998876643
Q ss_pred C-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024249 202 L-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 202 ~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 254 (270)
. .++.-+..|+.+..| +.+.+..++.+....+...+ ..+|...+++++..+
T Consensus 171 ~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 171 LYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 3 233346677877664 45555555555554554433 468888888888765
No 145
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.51 E-value=5.3e-14 Score=115.67 Aligned_cols=112 Identities=24% Similarity=0.369 Sum_probs=88.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.++.+..+.|.|||||||||++|.|.+ ++..+.+.+++.++.
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP 100 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP 100 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhh
Confidence 45688999999999999999999999997 566777777765431
Q ss_pred -----------------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 84 -----------------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 84 -----------------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
.+|+. +++++.+--+.+|.+..|.|+++|| |.+..|+-
T Consensus 101 ~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE-----------PFgALDpI 169 (309)
T COG1125 101 KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE-----------PFGALDPI 169 (309)
T ss_pred hhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC-----------CccccChh
Confidence 11222 2345566667789999999999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.+..+.+.+..+. .+-+.+||+.||++++.
T Consensus 170 ~R~~lQ~e~~~lq---~~l~kTivfVTHDidEA 199 (309)
T COG1125 170 TRKQLQEEIKELQ---KELGKTIVFVTHDIDEA 199 (309)
T ss_pred hHHHHHHHHHHHH---HHhCCEEEEEecCHHHH
Confidence 9998888888874 44578999999997654
No 146
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.50 E-value=6.5e-13 Score=116.28 Aligned_cols=223 Identities=17% Similarity=0.276 Sum_probs=132.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-------C--eEEE
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------C--TFIR 76 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-------~--~~i~ 76 (270)
..+.+|++|.|.++.++.+.-.+..+ ...++||.|+||+||||+++++++-+. + .+..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 35678999999999998887654432 236799999999999999999998652 2 1111
Q ss_pred Ecch---------hHHH-------hhhchhhH------HHHHH-------HHHH--HhcCCeEEEEcCCCcccCcccCCC
Q 024249 77 VSGS---------ELVQ-------KYIGEGSR------MVREL-------FVMA--REHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 77 i~~~---------~~~~-------~~~~~~~~------~~~~~-------~~~a--~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
+.+. .+.. ...+.... .+... |..- ......+|++||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-------- 140 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-------- 140 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC--------
Confidence 1100 0000 00000000 00111 1100 0112248999998764
Q ss_pred CCCCChHHHHHHHHHHHhhc------CC--cCCCCeEEEEEeCCCC-CchhhhcCCCCcceEEEeCCCCH-HHHHHHHHH
Q 024249 126 SGNGDSEVQRTMLELLNQLD------GF--EASNKIKVLMATNRID-ILDQALLRPGRIDRKIEFPNPNE-ESRLDILKI 195 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~------~~--~~~~~~~vi~tt~~~~-~l~~~l~r~~r~~~~i~~~~p~~-~~r~~il~~ 195 (270)
++..+..+.+.+++-. +. .....+.+++++|..+ .+++++.. ||...+.++.|.. ++|.+|++.
T Consensus 141 ----~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 141 ----EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred ----CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 3556677777775421 11 1123466666666433 47778887 9999999988876 899999986
Q ss_pred hhccC----CC------C---------------CCCC--------HHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCC
Q 024249 196 HSRRM----NL------M---------------RGID--------LKKIAEKMN-GASGAELKAVCTEAGMFALRERRIH 241 (270)
Q Consensus 196 ~~~~~----~~------~---------------~~~~--------~~~la~~~~-g~~~~dl~~l~~~a~~~a~~~~~~~ 241 (270)
..... .. . ..+. +..++..+. .-.-+++. +++.|...|+..++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~ 293 (334)
T PRK13407 215 RDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEA 293 (334)
T ss_pred hhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCe
Confidence 42210 00 0 0010 112233332 11234554 8888989999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 024249 242 VTQEDFEMAVAKVMK 256 (270)
Q Consensus 242 i~~~d~~~a~~~~~~ 256 (270)
++.+|+..+..-++.
T Consensus 294 V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 294 VGRSHLRSVATMALS 308 (334)
T ss_pred eCHHHHHHHHHHhhh
Confidence 999999988876665
No 147
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=6.1e-14 Score=118.20 Aligned_cols=114 Identities=26% Similarity=0.412 Sum_probs=89.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcch---hHH-------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGS---ELV------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~---~~~------------------------------- 83 (270)
++.++.++-+.|.||||+||||++|+||+ .++.+.|.+++. +..
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFG 101 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG 101 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhc
Confidence 45678899999999999999999999998 456677777665 210
Q ss_pred ------------------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 84 ------------------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 84 ------------------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
..|+. .+.++.+.++++|.+..|.+|+||| |.+..|.
T Consensus 102 l~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE-----------Pf~ALDa 170 (345)
T COG1118 102 LKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE-----------PFGALDA 170 (345)
T ss_pred ccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC-----------CchhhhH
Confidence 11111 3456677888889999999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+..+|..+. ..-++++++.||+.++.-.
T Consensus 171 ~vr~~lr~wLr~~~---~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 171 KVRKELRRWLRKLH---DRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred HHHHHHHHHHHHHH---HhhCceEEEEeCCHHHHHh
Confidence 99999999988873 3458999999999876543
No 148
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=1.5e-12 Score=115.64 Aligned_cols=71 Identities=31% Similarity=0.514 Sum_probs=54.1
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcC-CCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLG-IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
+-|+|+++.++.+...+.....+......+. -..|++++|+||||||||++++++|...+.+++.+++..+
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 3589999999999988886533322211111 2246899999999999999999999999999998887644
No 149
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.49 E-value=1.5e-12 Score=114.19 Aligned_cols=223 Identities=17% Similarity=0.251 Sum_probs=135.7
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-------CeEE-------
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFI------- 75 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-------~~~i------- 75 (270)
.|..|+|.++.+..|.-.+..| ...+++|.|+||+||||+++++++... +++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5889999999998887666654 356799999999999999999997542 1110
Q ss_pred --EEcchhH----------------HHhhhchhhH------HHHHHH-------HH--HHhcCCeEEEEcCCCcccCccc
Q 024249 76 --RVSGSEL----------------VQKYIGEGSR------MVRELF-------VM--AREHAPSIIFMDEIDSIGSARM 122 (270)
Q Consensus 76 --~i~~~~~----------------~~~~~~~~~~------~~~~~~-------~~--a~~~~p~il~lDeid~l~~~~~ 122 (270)
..+|... .....+..+. .+...+ .. .......+||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L----- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL----- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC-----
Confidence 0000000 0000000000 111111 00 00123469999998764
Q ss_pred CCCCCCCChHHHHHHHHHHHhh------cCCc--CCCCeEEEEEeCCCC-CchhhhcCCCCcceEEEeCCCCH-HHHHHH
Q 024249 123 ESGSGNGDSEVQRTMLELLNQL------DGFE--ASNKIKVLMATNRID-ILDQALLRPGRIDRKIEFPNPNE-ESRLDI 192 (270)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~l~~l------~~~~--~~~~~~vi~tt~~~~-~l~~~l~r~~r~~~~i~~~~p~~-~~r~~i 192 (270)
++..+..+.+.+++- .+.. ...++.+++|+|-.+ .+++.+.. ||...+.++.|.. ++|.+|
T Consensus 144 -------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eI 214 (337)
T TIGR02030 144 -------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEI 214 (337)
T ss_pred -------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHH
Confidence 345667777777542 1110 112455555555333 57778888 8988899988875 888999
Q ss_pred HHHhhcc----CC----C-----------------CCCCC--------HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 024249 193 LKIHSRR----MN----L-----------------MRGID--------LKKIAEKMNGASGAELKAVCTEAGMFALRERR 239 (270)
Q Consensus 193 l~~~~~~----~~----~-----------------~~~~~--------~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~ 239 (270)
++..... .. . ..++. +..++..+..-+++--..+++.|...|+.+++
T Consensus 215 L~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR 294 (337)
T TIGR02030 215 VERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGR 294 (337)
T ss_pred HHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 8763211 00 0 01111 12344444433556666888888889999999
Q ss_pred CCCCHHHHHHHHHHHhhhhh
Q 024249 240 IHVTQEDFEMAVAKVMKKET 259 (270)
Q Consensus 240 ~~i~~~d~~~a~~~~~~~~~ 259 (270)
..++.+|+..+..-+++..-
T Consensus 295 ~~V~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 295 TEVTVDDIRRVAVLALRHRL 314 (337)
T ss_pred CCCCHHHHHHHHHHHHHHhC
Confidence 99999999999998887443
No 150
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=7.6e-13 Score=124.27 Aligned_cols=175 Identities=15% Similarity=0.214 Sum_probs=108.3
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE-cc
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV-SG 79 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i-~~ 79 (270)
.|+|+++|.++++++|.++.++++..++.... ++..++..++|+||+||||||+++++|+..+..++.. +.
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 48899999999999999999999998887632 2345667799999999999999999998766543321 11
Q ss_pred hh-------------HHHh--hhchhhHHHHHHHHHHH----------hcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 80 SE-------------LVQK--YIGEGSRMVRELFVMAR----------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 80 ~~-------------~~~~--~~~~~~~~~~~~~~~a~----------~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
.. +... .+......++.++..+. .....||||||++.++.. +..
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r---------~~~-- 213 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR---------DTR-- 213 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh---------hHH--
Confidence 10 0000 01122334555555554 235679999999876421 111
Q ss_pred HHHHHHHH-hhcCCcCCCCeEEEEEeCCC-C--------C------chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhc
Q 024249 135 RTMLELLN-QLDGFEASNKIKVLMATNRI-D--------I------LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR 198 (270)
Q Consensus 135 ~~l~~~l~-~l~~~~~~~~~~vi~tt~~~-~--------~------l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~ 198 (270)
.+..++. ... ....+.+|+++++. . . +.+.++...|+ ..|.|++.+..+-.+.|+..+.
T Consensus 214 -~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 214 -ALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred -HHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHH
Confidence 2334444 221 23345566655531 1 0 22344432233 4689999999997777776655
Q ss_pred c
Q 024249 199 R 199 (270)
Q Consensus 199 ~ 199 (270)
.
T Consensus 289 ~ 289 (637)
T TIGR00602 289 I 289 (637)
T ss_pred h
Confidence 3
No 151
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.49 E-value=4e-12 Score=111.61 Aligned_cols=225 Identities=17% Similarity=0.246 Sum_probs=137.8
Q ss_pred CCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-------CeEEE---
Q 024249 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIR--- 76 (270)
Q Consensus 7 ~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-------~~~i~--- 76 (270)
+.++|++|+|+++.|..|.-.+..| ...+++|.|++||||||++|.++..+. +++..
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4568999999999999988877775 235799999999999999999986432 12210
Q ss_pred ---EcchhHHHhh-------------------hchhhHH------HHHHHHHHH---------hcCCeEEEEcCCCcccC
Q 024249 77 ---VSGSELVQKY-------------------IGEGSRM------VRELFVMAR---------EHAPSIIFMDEIDSIGS 119 (270)
Q Consensus 77 ---i~~~~~~~~~-------------------~~~~~~~------~~~~~~~a~---------~~~p~il~lDeid~l~~ 119 (270)
..+..+.... .+..+.. +...|.... .....+|++||++.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL-- 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-- 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC--
Confidence 0000011000 0111111 111121111 112359999998764
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhh------cCCc--CCCCeEEEEEeCCCC-CchhhhcCCCCcceEEEeCCCC-HHHH
Q 024249 120 ARMESGSGNGDSEVQRTMLELLNQL------DGFE--ASNKIKVLMATNRID-ILDQALLRPGRIDRKIEFPNPN-EESR 189 (270)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~--~~~~~~vi~tt~~~~-~l~~~l~r~~r~~~~i~~~~p~-~~~r 189 (270)
++..+..+.+.++.- ++.. ...++.+|+|.|-.+ .+.+.+.. ||...+.+..|+ .+++
T Consensus 157 ----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 ----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred ----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 345666677776541 1111 122455555555333 47788877 899899999887 5899
Q ss_pred HHHHHHhhccC--CC-----------------------CCCCC--------HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 024249 190 LDILKIHSRRM--NL-----------------------MRGID--------LKKIAEKMNGASGAELKAVCTEAGMFALR 236 (270)
Q Consensus 190 ~~il~~~~~~~--~~-----------------------~~~~~--------~~~la~~~~g~~~~dl~~l~~~a~~~a~~ 236 (270)
.+|++...... .. ...+. +..++..+.--+++--..+++.|...|+-
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal 304 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAF 304 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHH
Confidence 99997642210 00 01111 12233334333566666788888888888
Q ss_pred hcCCCCCHHHHHHHHHHHhhhh
Q 024249 237 ERRIHVTQEDFEMAVAKVMKKE 258 (270)
Q Consensus 237 ~~~~~i~~~d~~~a~~~~~~~~ 258 (270)
.++..++.+|+..+..-+++..
T Consensus 305 ~GR~~V~pdDv~~~a~~vL~HR 326 (350)
T CHL00081 305 EGRTEVTPKDIFKVITLCLRHR 326 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988743
No 152
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.9e-13 Score=109.66 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 89 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 89 ~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.++++.+-.+++|.+.+|.||++|| |++.+|+.....+-+++.++. ...+||+.||++.....
T Consensus 151 SGGQQQRLcIARalAv~PeVlLmDE-----------PtSALDPIsT~kIEeLi~eLk-----~~yTIviVTHnmqQAaR 213 (253)
T COG1117 151 SGGQQQRLCIARALAVKPEVLLMDE-----------PTSALDPISTLKIEELITELK-----KKYTIVIVTHNMQQAAR 213 (253)
T ss_pred ChhHHHHHHHHHHHhcCCcEEEecC-----------cccccCchhHHHHHHHHHHHH-----hccEEEEEeCCHHHHHH
Confidence 3456678888999999999999999 899999999999999999883 46789999999876554
No 153
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.6e-13 Score=109.24 Aligned_cols=114 Identities=24% Similarity=0.358 Sum_probs=87.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|....|..+.|.||||+||||++|.||. .++.+.+.+++-+...
T Consensus 22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~ 101 (245)
T COG4555 22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR 101 (245)
T ss_pred eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHH
Confidence 45678899999999999999999999997 4556666665543210
Q ss_pred ---------------------------hhhch--hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 85 ---------------------------KYIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 85 ---------------------------~~~~~--~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
+..+. ...+.+-.+++|.-++|+++++|| |.++.|-...+
T Consensus 102 L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE-----------P~sGLDi~~~r 170 (245)
T COG4555 102 LNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE-----------PTSGLDIRTRR 170 (245)
T ss_pred HhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC-----------CCCCccHHHHH
Confidence 00111 122345566778889999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
.+.+++..+ ++.+..||++||.++++...
T Consensus 171 ~~~dfi~q~----k~egr~viFSSH~m~Eveal 199 (245)
T COG4555 171 KFHDFIKQL----KNEGRAVIFSSHIMQEVEAL 199 (245)
T ss_pred HHHHHHHHh----hcCCcEEEEecccHHHHHHh
Confidence 999999988 45578899999999887653
No 154
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.49 E-value=1.1e-13 Score=119.86 Aligned_cols=115 Identities=27% Similarity=0.415 Sum_probs=85.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH--------------------------------h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------K 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------~ 85 (270)
+|.+.+|..+.|.||||+|||||+|+|++. +..+.+.+.+.+... .
T Consensus 25 s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~ 104 (293)
T COG1131 25 SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFAR 104 (293)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHH
Confidence 356788899999999999999999999984 345555555422100 0
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..+.+.+-.+..|..++|.++|||| |+++.|+..+.
T Consensus 105 l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE-----------Pt~GLDp~~~~ 173 (293)
T COG1131 105 LYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE-----------PTSGLDPESRR 173 (293)
T ss_pred HhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC-----------CCcCCCHHHHH
Confidence 000 1122345556667889999999999 99999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
.+.+++..+. ...+.+|++|||.++.+...
T Consensus 174 ~~~~~l~~l~---~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 174 EIWELLRELA---KEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred HHHHHHHHHH---hCCCcEEEEeCCcHHHHHHh
Confidence 9999999984 33448999999999888764
No 155
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=1.9e-12 Score=116.00 Aligned_cols=223 Identities=23% Similarity=0.337 Sum_probs=132.4
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHh----cCC-CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH-h
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFES----LGI-AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-K 85 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~----~~~-~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~-~ 85 (270)
+.|+|+++.++.+...+......-..... -++ ..+.++||+||||||||++++++|..++.++..+++..+.. .
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 45899999999998877543222110000 011 12468999999999999999999999999999888877542 3
Q ss_pred hhchh-hHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCCCCCCCC---hHHHHHHHHHHHhhc------C--CcC
Q 024249 86 YIGEG-SRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGD---SEVQRTMLELLNQLD------G--FEA 149 (270)
Q Consensus 86 ~~~~~-~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~~~~~~~---~~~~~~l~~~l~~l~------~--~~~ 149 (270)
|.|.. +..+...+..+ ....+.||||||+|.+.+.+.. ++...+ ...++.++++|+... + ...
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~-~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~ 235 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSEN-PSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHP 235 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcc-ccccccccchhHHHHHHHHhhccceecccCCCcccc
Confidence 44542 33334433322 2346789999999999875321 111111 245666666664210 0 001
Q ss_pred CCCeEEEEEeCCCC--------------------------C------------------------chhhhcCCCCcceEE
Q 024249 150 SNKIKVLMATNRID--------------------------I------------------------LDQALLRPGRIDRKI 179 (270)
Q Consensus 150 ~~~~~vi~tt~~~~--------------------------~------------------------l~~~l~r~~r~~~~i 179 (270)
..+.++|.|+|-.- . +.|.+ .||++..+
T Consensus 236 ~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf--lgRld~Iv 313 (413)
T TIGR00382 236 YQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF--IGRLPVIA 313 (413)
T ss_pred CCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH--hCCCCeEe
Confidence 12345666666410 0 00112 24788888
Q ss_pred EeCCCCHHHHHHHHHHh----hccC---CCCCCCC-------HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHh
Q 024249 180 EFPNPNEESRLDILKIH----SRRM---NLMRGID-------LKKIAEKM--NGASGAELKAVCTEAGMFALRE 237 (270)
Q Consensus 180 ~~~~p~~~~r~~il~~~----~~~~---~~~~~~~-------~~~la~~~--~g~~~~dl~~l~~~a~~~a~~~ 237 (270)
.|.+.+.++...|+... .+++ ....+++ +..|++.. ..+-++.|+.++++....++.+
T Consensus 314 ~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 314 TLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 99999999999988642 2211 0011221 45666653 4566788888888877766544
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.48 E-value=3.6e-12 Score=113.18 Aligned_cols=194 Identities=18% Similarity=0.321 Sum_probs=134.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh-----cCCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 120 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~-----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~ 120 (270)
...++|+||.|+|||+|+++++++ ++..++++....+....+......-.+-|..-. +-.+++|||++.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 455899999999999999999974 456789999888877766655554455565555 5579999999987543
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC-CCCCch---hhhcCCCCc--ceEEEeCCCCHHHHHHHHH
Q 024249 121 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN-RIDILD---QALLRPGRI--DRKIEFPNPNEESRLDILK 194 (270)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~-~~~~l~---~~l~r~~r~--~~~i~~~~p~~~~r~~il~ 194 (270)
...+..+...++.+. .+ +..+|+|+. .|..++ +.+.+ || +..+.+.+|+.+.|..||+
T Consensus 191 ----------~~~qeefFh~FN~l~---~~-~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 191 ----------ERTQEEFFHTFNALL---EN-GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ----------hhHHHHHHHHHHHHH---hc-CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHH
Confidence 234667777777773 23 335666654 444443 56666 55 5567899999999999999
Q ss_pred HhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhh
Q 024249 195 IHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 259 (270)
Q Consensus 195 ~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~ 259 (270)
......... ++.-...++..... +.+++...+.+...++...++ .+|.+.+.+++.+......
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcccc
Confidence 866554432 33335566776543 678888777777776655444 6777777777777766543
No 157
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.48 E-value=3.9e-13 Score=109.13 Aligned_cols=137 Identities=21% Similarity=0.315 Sum_probs=89.3
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEEE
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR 76 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~ 76 (270)
|||+++|..++||+|.++.++.+.-+... ..-.++++.||||+||||-+.++|+++ .-++.+
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 89999999999999999999988876654 123458999999999999999999864 234566
Q ss_pred EcchhHHHhhhchhhHHHHHHHHHHHhc----CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCC
Q 024249 77 VSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 152 (270)
Q Consensus 77 i~~~~~~~~~~~~~~~~~~~~~~~a~~~----~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 152 (270)
++.++=.+ ++.....+ ..|++-+-. .-.|++|||+|..- ...++.+...++-. ++.
T Consensus 84 LNASdeRG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT------------~gAQQAlRRtMEiy-----S~t 143 (333)
T KOG0991|consen 84 LNASDERG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMT------------AGAQQALRRTMEIY-----SNT 143 (333)
T ss_pred ccCccccc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchhh------------hHHHHHHHHHHHHH-----ccc
Confidence 66654221 11111222 234433322 23599999988631 22344455555444 234
Q ss_pred eEEEEEeCCCCCchhhhcC
Q 024249 153 IKVLMATNRIDILDQALLR 171 (270)
Q Consensus 153 ~~vi~tt~~~~~l~~~l~r 171 (270)
..+.+++|..+.+-..+.+
T Consensus 144 tRFalaCN~s~KIiEPIQS 162 (333)
T KOG0991|consen 144 TRFALACNQSEKIIEPIQS 162 (333)
T ss_pred chhhhhhcchhhhhhhHHh
Confidence 4577778877776655554
No 158
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.47 E-value=2.6e-13 Score=104.97 Aligned_cols=111 Identities=23% Similarity=0.336 Sum_probs=81.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHHhh-------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKY------------------------------- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~~~------------------------------- 86 (270)
+|.+.+|..++|+||+|||||||+|++|.- +..+.+.+.+.++....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~ 102 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQ 102 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchH
Confidence 467889999999999999999999999973 45666666665431100
Q ss_pred ----------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 87 ----------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 87 ----------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
+. .+++..+..+.+-...-|.|++||| +++..|+...+.
T Consensus 103 ~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE-----------~TsALD~~nkr~ 171 (223)
T COG4619 103 IRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE-----------ITSALDESNKRN 171 (223)
T ss_pred HhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC-----------chhhcChhhHHH
Confidence 00 1233344445555677899999999 677888888888
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
+.+++-.+- ...++.++..||+++.
T Consensus 172 ie~mi~~~v---~~q~vAv~WiTHd~dq 196 (223)
T COG4619 172 IEEMIHRYV---REQNVAVLWITHDKDQ 196 (223)
T ss_pred HHHHHHHHh---hhhceEEEEEecChHH
Confidence 887776653 3568999999999876
No 159
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=1.4e-12 Score=115.84 Aligned_cols=72 Identities=29% Similarity=0.479 Sum_probs=54.6
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCC-CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGI-AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
+.|+|+++.++.+...+.....+..+...+.. ..|.+++|+||||||||++++.+|...+.+++.++++.+.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhc
Confidence 35999999999999888764332211111111 1358899999999999999999999999999999887654
No 160
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.47 E-value=9.4e-14 Score=120.62 Aligned_cols=112 Identities=22% Similarity=0.290 Sum_probs=87.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~---------------------------------- 83 (270)
++.+..|+.+.|.|||||||||++|.||+ .+..+.+.+++.++.
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 45678899999999999999999999998 456677776664431
Q ss_pred -------------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 84 -------------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 84 -------------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
..++. .+.++.+-++.+|.-.+|.++++|| |.++.|...+..
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE-----------PlSnLDa~lR~~ 171 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE-----------PLSNLDAKLRVL 171 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC-----------chhHhhHHHHHH
Confidence 11111 3456677888889999999999999 899999999988
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+...+..+. ..-+.++|..||+..+.
T Consensus 172 mr~ei~~lh---~~l~~T~IYVTHDq~EA 197 (338)
T COG3839 172 MRSEIKKLH---ERLGTTTIYVTHDQVEA 197 (338)
T ss_pred HHHHHHHHH---HhcCCcEEEEcCCHHHH
Confidence 888888874 44578999999986544
No 161
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.47 E-value=8.8e-14 Score=115.99 Aligned_cols=115 Identities=25% Similarity=0.418 Sum_probs=86.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH--------hhhc---------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------KYIG--------------------- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------~~~~--------------------- 88 (270)
++.+.++..++|.||||||||||++.+++- +..+.+.+++.++.. +.+|
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evaf 103 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAF 103 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhh
Confidence 456888999999999999999999999983 344555555432110 0000
Q ss_pred ------------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 89 ------------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 89 ------------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
...++.+-+++.+.+.+|.++++|| |+++.|+.
T Consensus 104 g~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE-----------Pta~LD~~ 172 (235)
T COG1122 104 GLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE-----------PTAGLDPK 172 (235)
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC-----------CCCCCCHH
Confidence 1223345556667889999999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
.++.+.+++..+. ...+.++|++||+.+.+...
T Consensus 173 ~~~~l~~~l~~L~---~~~~~tii~~tHd~~~~~~~ 205 (235)
T COG1122 173 GRRELLELLKKLK---EEGGKTIIIVTHDLELVLEY 205 (235)
T ss_pred HHHHHHHHHHHHH---hcCCCeEEEEeCcHHHHHhh
Confidence 9999999999984 44578999999999887663
No 162
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.47 E-value=1.7e-13 Score=119.49 Aligned_cols=113 Identities=24% Similarity=0.354 Sum_probs=84.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------------~~ 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 27 sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~ 106 (306)
T PRK13537 27 SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGR 106 (306)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHH
Confidence 456788999999999999999999999984 34455555432210 00
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..+.+.+-.+.+|..++|.++++|| |+++.|+..+.
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE-----------Pt~gLD~~~~~ 175 (306)
T PRK13537 107 YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE-----------PTTGLDPQARH 175 (306)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC-----------CCcCCCHHHHH
Confidence 000 1122334555667789999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. ..+.+||++||+++.+..
T Consensus 176 ~l~~~l~~l~----~~g~till~sH~l~e~~~ 203 (306)
T PRK13537 176 LMWERLRSLL----ARGKTILLTTHFMEEAER 203 (306)
T ss_pred HHHHHHHHHH----hCCCEEEEECCCHHHHHH
Confidence 9999999873 347899999999987765
No 163
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.47 E-value=2.2e-13 Score=109.21 Aligned_cols=113 Identities=22% Similarity=0.261 Sum_probs=86.7
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--Hhhh-chhhHHHHHHHHHHHhcCCeEEEEcCCC
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--QKYI-GEGSRMVRELFVMAREHAPSIIFMDEID 115 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--~~~~-~~~~~~~~~~~~~a~~~~p~il~lDeid 115 (270)
+.+.++..+.|.||||+|||||+++|++. +..+.+.+++..+. .... -...++.+-.+.++....|.++++||
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDE-- 97 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDE-- 97 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEEC--
Confidence 45788999999999999999999999984 45666776653321 1111 22345677778888999999999999
Q ss_pred cccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 116 SIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|...+..+.+++..+. .+.+.++|++||+.+.+..
T Consensus 98 ---------Pts~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 98 ---------PSAYLDIEQRLNAARAIRRLS---EEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred ---------CcccCCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHHHHHH
Confidence 889999999999999888763 2234789999999876653
No 164
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=1.8e-12 Score=124.55 Aligned_cols=204 Identities=20% Similarity=0.273 Sum_probs=126.2
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcC--CCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH-----
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLG--IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ----- 84 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~----- 84 (270)
+.|+|+++.++.+.+.+..... .+. -.|...++|+||+|||||++++++|...+.+++.++++++..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~------gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRA------GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhc------cccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHH
Confidence 3589999999999999876421 111 122346899999999999999999999999999999887532
Q ss_pred hhhch----hhHHHHHHHHHH-HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc---C--C-cCCCCe
Q 024249 85 KYIGE----GSRMVRELFVMA-REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD---G--F-EASNKI 153 (270)
Q Consensus 85 ~~~~~----~~~~~~~~~~~a-~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~---~--~-~~~~~~ 153 (270)
..+|. ........+..+ .....+||+|||+|++ ++.....+.++++.-. . . ..-.+.
T Consensus 532 ~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 532 RLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred HHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh------------hHHHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 22221 111111122233 3445589999999885 2456666777775321 0 0 011356
Q ss_pred EEEEEeCCCC-------------------------CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccC-------C
Q 024249 154 KVLMATNRID-------------------------ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM-------N 201 (270)
Q Consensus 154 ~vi~tt~~~~-------------------------~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~-------~ 201 (270)
++|+|||.-. .+.|.++. |++..+.|++.+.++..+|+..++... .
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred EEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7888888220 12233433 889999999999999999987664422 1
Q ss_pred CCCCCC---HHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Q 024249 202 LMRGID---LKKIAEKM--NGASGAELKAVCTEAGMFAL 235 (270)
Q Consensus 202 ~~~~~~---~~~la~~~--~g~~~~dl~~l~~~a~~~a~ 235 (270)
..=.++ ++.|++.. ..|-++.|+.++++-....+
T Consensus 678 i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~l 716 (758)
T PRK11034 678 VSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_pred CCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHH
Confidence 111111 33455442 23445777777766554443
No 165
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.46 E-value=3.6e-13 Score=111.70 Aligned_cols=113 Identities=27% Similarity=0.486 Sum_probs=81.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------hhh--------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ----------KYI-------------------- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~----------~~~-------------------- 87 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++.. ..+
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 102 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVA 102 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHH
Confidence 456789999999999999999999999984 234444444322100 000
Q ss_pred ------c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 88 ------G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 88 ------~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
+ ..+++.+-.+.+|....|.++++|| |+++.|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE-----------Pt~~LD~ 171 (216)
T TIGR00960 103 FPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADE-----------PTGNLDP 171 (216)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCcCCH
Confidence 0 1122334445557778999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. +.+.+||++||+++.+..
T Consensus 172 ~~~~~l~~~l~~~~----~~~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 172 ELSRDIMRLFEEFN----RRGTTVLVATHDINLVET 203 (216)
T ss_pred HHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 99999999998873 236789999999876653
No 166
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.46 E-value=2.2e-13 Score=118.70 Aligned_cols=113 Identities=22% Similarity=0.401 Sum_probs=83.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------------~~ 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 92 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGR 92 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHH
Confidence 456889999999999999999999999984 34455555432110 00
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..+++.+-.+.+|....|.+|++|| |+++.|+..+.
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE-----------Pt~gLD~~~~~ 161 (302)
T TIGR01188 93 LYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE-----------PTTGLDPRTRR 161 (302)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCcCCCHHHHH
Confidence 000 1123334555667788999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. ..+.+||++||+++.+..
T Consensus 162 ~l~~~l~~~~----~~g~tvi~~sH~~~~~~~ 189 (302)
T TIGR01188 162 AIWDYIRALK----EEGVTILLTTHYMEEADK 189 (302)
T ss_pred HHHHHHHHHH----hCCCEEEEECCCHHHHHH
Confidence 9999998873 236899999999887765
No 167
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.46 E-value=3.2e-13 Score=108.18 Aligned_cols=111 Identities=23% Similarity=0.362 Sum_probs=85.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH-------hhh------------------chhhH
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ-------KYI------------------GEGSR 92 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~-------~~~------------------~~~~~ 92 (270)
++.+.++..+.|.||+|+|||||+++|++. +..+.+.+++.++.. ... -...+
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH
Confidence 356788999999999999999999999984 345556655433210 000 12345
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 93 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 93 ~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+.+-.+.+|...+|.++++|| |+++.|...+..+.+++..+. +.+.++|++||+.+.+
T Consensus 102 ~qrv~la~al~~~p~~lllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~~ 159 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDE-----------PNSHLDVEGERALNQAIAALK----AAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEEC-----------CccccCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHH
Confidence 577788889999999999999 899999999999999998873 2367899999997654
No 168
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=5.9e-13 Score=108.49 Aligned_cols=141 Identities=24% Similarity=0.386 Sum_probs=99.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+++++.+.|.||+|+|||||+|+|++. +..+.+.+++.++..
T Consensus 24 nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl 103 (258)
T COG3638 24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVL 103 (258)
T ss_pred eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHH
Confidence 456889999999999999999999999973 334555555533200
Q ss_pred -----------hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 85 -----------KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 85 -----------~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
..++ .+.++.+..+++|...+|.||+.||
T Consensus 104 ~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE---------- 173 (258)
T COG3638 104 LGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE---------- 173 (258)
T ss_pred hhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC----------
Confidence 0000 3445667788888999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCc-ceEEEeCCCCHHHHHHHHH
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRI-DRKIEFPNPNEESRLDILK 194 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~-~~~i~~~~p~~~~r~~il~ 194 (270)
|.+++|+...+.+.+.+..++ .+.+++||+.-|..+..-....|.--+ .-++.|.-|..+--.+.+.
T Consensus 174 -PvasLDp~~a~~Vm~~l~~in---~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~~~~ 241 (258)
T COG3638 174 -PVASLDPESAKKVMDILKDIN---QEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALD 241 (258)
T ss_pred -cccccChhhHHHHHHHHHHHH---HHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHHHHH
Confidence 899999999999999998884 567899999999988665544331111 2234455444443334443
No 169
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.45 E-value=1.1e-11 Score=106.14 Aligned_cols=191 Identities=16% Similarity=0.255 Sum_probs=115.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCe-EE--E-Ec----chhHHHh---hhch------hh---HHHHHHH-HHHHhc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCT-FI--R-VS----GSELVQK---YIGE------GS---RMVRELF-VMAREH 104 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~-~i--~-i~----~~~~~~~---~~~~------~~---~~~~~~~-~~a~~~ 104 (270)
+..++|+||+|+||||+++.+++..... +. . +. ..++... ..+. .. ..+...+ ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 4468899999999999999999876532 11 1 11 1111111 1110 00 1122222 223456
Q ss_pred CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc---h----hhhcCCCCcce
Q 024249 105 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL---D----QALLRPGRIDR 177 (270)
Q Consensus 105 ~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l---~----~~l~r~~r~~~ 177 (270)
.+.+|++||++.+. ......+..+.+... .....+.|+++ ..++.. . ..+.+ |+..
T Consensus 123 ~~~vliiDe~~~l~------------~~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~ 185 (269)
T TIGR03015 123 KRALLVVDEAQNLT------------PELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIA 185 (269)
T ss_pred CCeEEEEECcccCC------------HHHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heee
Confidence 77899999988752 222222322222110 11122333443 333321 1 11223 6667
Q ss_pred EEEeCCCCHHHHHHHHHHhhccCCC-----CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 178 KIEFPNPNEESRLDILKIHSRRMNL-----MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 178 ~i~~~~p~~~~r~~il~~~~~~~~~-----~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
.+.+++.+.++..+++...+..... ..+..+..|.+.+.|. ++.+..+|..+...|...+...|+.++++.++.
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 8899999999999998877654432 2223467788899886 566999999999999888889999999999998
Q ss_pred HH
Q 024249 253 KV 254 (270)
Q Consensus 253 ~~ 254 (270)
.+
T Consensus 265 ~~ 266 (269)
T TIGR03015 265 EI 266 (269)
T ss_pred Hh
Confidence 76
No 170
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.45 E-value=3.6e-13 Score=110.84 Aligned_cols=113 Identities=23% Similarity=0.297 Sum_probs=80.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH--------------------HH-----------hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL--------------------VQ-----------KY 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~--------------------~~-----------~~ 86 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++ .. ..
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~ 99 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE 99 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhh
Confidence 356789999999999999999999999984 2334343332211 00 00
Q ss_pred hc--------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHH
Q 024249 87 IG--------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 140 (270)
Q Consensus 87 ~~--------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~ 140 (270)
.+ ...++.+-.+.+|...+|.++++|| |+++.|+.....+.++
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~ 168 (205)
T cd03226 100 LDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE-----------PTSGLDYKNMERVGEL 168 (205)
T ss_pred cCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC-----------CCccCCHHHHHHHHHH
Confidence 00 1122334555567778999999999 8999999999999999
Q ss_pred HHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 141 LNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 141 l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+. +.+.++|++||+++.+..
T Consensus 169 l~~~~----~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 169 IRELA----AQGKAVIVITHDYEFLAK 191 (205)
T ss_pred HHHHH----HCCCEEEEEeCCHHHHHH
Confidence 98873 236789999999876654
No 171
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=5.1e-13 Score=110.34 Aligned_cols=113 Identities=20% Similarity=0.341 Sum_probs=80.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-----------------------------Hhhhc
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV-----------------------------QKYIG 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~-----------------------------~~~~~ 88 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. ....+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 99 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG 99 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC
Confidence 456789999999999999999999999984 33344444332110 00000
Q ss_pred ------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHH
Q 024249 89 ------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML 138 (270)
Q Consensus 89 ------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~ 138 (270)
..+++.+-.+.+|....|.++++|| |+++.|...+..+.
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE-----------P~~~LD~~~~~~~~ 168 (210)
T cd03269 100 LKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE-----------PFSGLDPVNVELLK 168 (210)
T ss_pred CChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCcCCCHHHHHHHH
Confidence 1122234445567778999999999 89999999999999
Q ss_pred HHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 139 ELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 139 ~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++..+. +.+.+||++||+.+.+..
T Consensus 169 ~~l~~~~----~~~~tii~~sH~~~~~~~ 193 (210)
T cd03269 169 DVIRELA----RAGKTVILSTHQMELVEE 193 (210)
T ss_pred HHHHHHH----HCCCEEEEECCCHHHHHH
Confidence 9998873 236789999999876654
No 172
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.45 E-value=7.2e-13 Score=109.23 Aligned_cols=113 Identities=23% Similarity=0.285 Sum_probs=80.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH------------------------HH------hhh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL------------------------VQ------KYI 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~------------------------~~------~~~ 87 (270)
+|.+.++..+.|.||+|+|||||+++|++. +..+.+.+++.++ .. ...
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 101 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc
Confidence 456789999999999999999999999984 2334333332110 00 000
Q ss_pred c--------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHH
Q 024249 88 G--------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 141 (270)
Q Consensus 88 ~--------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l 141 (270)
+ ..+++.+-.+.+|...+|.++++|| |+++.|......+.+++
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l 170 (207)
T PRK13539 102 GGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE-----------PTAALDAAAVALFAELI 170 (207)
T ss_pred CCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHH
Confidence 0 1122334455567778999999999 89999999999999999
Q ss_pred HhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 142 NQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 142 ~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+. +.+.++|++||+.+.++.
T Consensus 171 ~~~~----~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 171 RAHL----AQGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHH----HCCCEEEEEeCCchhhcc
Confidence 8763 236789999999888774
No 173
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.45 E-value=4.1e-12 Score=122.89 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=127.7
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCC----CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh--
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIA----QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-- 85 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~----~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~-- 85 (270)
+.|.|+++.++.+.+.+... ..|+. +...++|+||+|||||++++++|..++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 46889998888888887653 12232 22358999999999999999999999999999998775431
Q ss_pred ---hhchh----h-HHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc---CCc---CCC
Q 024249 86 ---YIGEG----S-RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD---GFE---ASN 151 (270)
Q Consensus 86 ---~~~~~----~-~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~---~~~---~~~ 151 (270)
..|.. . .....+.........+||+|||+|++ ++.....+.++++.-. ... .-.
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~ 593 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA------------HPDIYNILLQVMDYATLTDNNGRKADFR 593 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc------------CHHHHHHHHHhhccCeeecCCCcccCCC
Confidence 11111 1 11122333344556689999999874 3456667777776421 000 112
Q ss_pred CeEEEEEeCCCCC-------------------------chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCC-----
Q 024249 152 KIKVLMATNRIDI-------------------------LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----- 201 (270)
Q Consensus 152 ~~~vi~tt~~~~~-------------------------l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~----- 201 (270)
+.++|+|||.-.. +.|.++ +|++..+.|.+.+.++..+|++..+....
T Consensus 594 ~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~ 671 (731)
T TIGR02639 594 NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNE 671 (731)
T ss_pred CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4667888875311 122333 38999999999999999999987754321
Q ss_pred --C---CCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHH
Q 024249 202 --L---MRGIDLKKIAEK--MNGASGAELKAVCTEAGMFAL 235 (270)
Q Consensus 202 --~---~~~~~~~~la~~--~~g~~~~dl~~l~~~a~~~a~ 235 (270)
. ..+.-.+.|++. ...|-++.|+.+++.-...++
T Consensus 672 ~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 672 KNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred CCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHH
Confidence 0 011113445554 235567788877776555443
No 174
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.44 E-value=3e-13 Score=109.07 Aligned_cols=114 Identities=27% Similarity=0.403 Sum_probs=86.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------H-------------------hhhc--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------Q-------------------KYIG-- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------~-------------------~~~~-- 88 (270)
++.+.++..+.|.||+|+|||||+++|++. +..+.+.+++.++. . ..+.
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 456789999999999999999999999984 34566666553221 0 0000
Q ss_pred hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 89 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 89 ~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
...+..+-.+.+|...+|.++++|| |+++.|......+.+++..+. .+.+.++|++||+++.+..
T Consensus 99 S~G~~qrl~laral~~~p~llllDE-----------P~~~LD~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDE-----------PTSHLDIAHQIELLELLRRLA---RERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 1234566777888889999999999 889999999999999998873 2225789999999887654
No 175
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=6.9e-13 Score=106.05 Aligned_cols=111 Identities=27% Similarity=0.390 Sum_probs=84.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH-------hhh------------------chhhH
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ-------KYI------------------GEGSR 92 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~-------~~~------------------~~~~~ 92 (270)
+|.+.++..+.|.||+|+|||||+++|++. +..+.+.+++..+.. ... -...+
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 356789999999999999999999999985 344556555543211 000 11234
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 93 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 93 ~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+.+-.+.+|...+|.++++|| |+++.|......+.+++..+. + +.++|++||+.+.+.
T Consensus 102 ~~rl~la~al~~~p~llllDE-----------P~~gLD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~ 159 (171)
T cd03228 102 RQRIAIARALLRDPPILILDE-----------ATSALDPETEALILEALRALA----K-GKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEEC-----------CCcCCCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHHH
Confidence 556677888889999999999 899999999999999998873 2 478999999987764
No 176
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.44 E-value=4.5e-13 Score=111.26 Aligned_cols=113 Identities=28% Similarity=0.479 Sum_probs=79.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH-----------h---------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ-----------K--------------------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~-----------~--------------------- 85 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++.. .
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 103 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV 103 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHH
Confidence 4567899999999999999999999999842 33444433221100 0
Q ss_pred -----hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 86 -----YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 86 -----~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+ ..+++.+-.+.+|...+|.++++|| |+++.|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE-----------P~~~LD 172 (218)
T cd03255 104 ELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADE-----------PTGNLD 172 (218)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcC-----------CcccCC
Confidence 000 1122234445556778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+..+..+.+++..+. .+.+.+||++||+++.+.
T Consensus 173 ~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 173 SETGKEVMELLRELN---KEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHHHHHHHHHHHH---HhcCCeEEEEECCHHHHh
Confidence 999999999998873 224688999999987653
No 177
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=3.9e-13 Score=107.72 Aligned_cols=113 Identities=27% Similarity=0.411 Sum_probs=85.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH------h-----------hh---------chhh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ------K-----------YI---------GEGS 91 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~------~-----------~~---------~~~~ 91 (270)
+|.+.++..+.|.||+|+|||||++.+++. +..+.+.+++..+.. . .. -...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 456788999999999999999999999984 344555554432210 0 00 1224
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 92 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 92 ~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
++.+-.+.+|...+|.++++|| |+++.|...+..+.+++..+. +++.++|++||+++.+..
T Consensus 100 ~~qrv~laral~~~p~illlDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDE-----------PTSGLDPESRREFWELLRELK----KEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH----HCCCEEEEECCCHHHHHH
Confidence 4566778889999999999999 899999999999999998873 235789999999876654
No 178
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.44 E-value=3.2e-13 Score=119.20 Aligned_cols=114 Identities=25% Similarity=0.360 Sum_probs=83.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------------~~ 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~ 140 (340)
T PRK13536 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGR 140 (340)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHH
Confidence 356789999999999999999999999984 34455554432210 00
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..+.+.+-.+.+|..++|.++++|| |+++.|+..+.
T Consensus 141 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE-----------Pt~gLD~~~r~ 209 (340)
T PRK13536 141 YFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE-----------PTTGLDPHARH 209 (340)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCCCCCHHHHH
Confidence 000 1122234445567778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
.+.+++..+. ..+.+||++||+.+.+...
T Consensus 210 ~l~~~l~~l~----~~g~tilisSH~l~e~~~~ 238 (340)
T PRK13536 210 LIWERLRSLL----ARGKTILLTTHFMEEAERL 238 (340)
T ss_pred HHHHHHHHHH----hCCCEEEEECCCHHHHHHh
Confidence 9999999883 2478999999999887653
No 179
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.44 E-value=3.2e-13 Score=104.90 Aligned_cols=110 Identities=22% Similarity=0.279 Sum_probs=83.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHHhhh-chhhHHHHHHHHHHHhcCCeEEEEcCCCc
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKYI-GEGSRMVRELFVMAREHAPSIIFMDEIDS 116 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~a~~~~p~il~lDeid~ 116 (270)
+|.+.+++.+.|.||+|+|||||++++++. +..+.+.+++.......+ -...+..+-.+.+|...+|.++++||
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDE--- 96 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDE--- 96 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeC---
Confidence 456789999999999999999999999985 345656555421000000 12345567778889999999999999
Q ss_pred ccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 117 IGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|.++.|......+.+++..+ +.+++++||+.+.+..
T Consensus 97 --------P~~~LD~~~~~~l~~~l~~~-------~~til~~th~~~~~~~ 132 (144)
T cd03221 97 --------PTNHLDLESIEALEEALKEY-------PGTVILVSHDRYFLDQ 132 (144)
T ss_pred --------CccCCCHHHHHHHHHHHHHc-------CCEEEEEECCHHHHHH
Confidence 88899999999999988776 2479999999776643
No 180
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.43 E-value=8.7e-13 Score=106.15 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=85.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH------hh-------------------hc--hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ------KY-------------------IG--EG 90 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~------~~-------------------~~--~~ 90 (270)
+|.+.++..+.|.||+|+|||||+++|++. +..+.+.+++.++.. .. .. ..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 456889999999999999999999999985 345666666543211 00 00 12
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 91 SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 91 ~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.++.+-.+.+|...+|.++++|| |+++.|......+.+++..+. + +.++|++||+++.+.
T Consensus 102 G~~qrv~laral~~~p~~lllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDE-----------PTVGLDPITERQLLSLIFEVL----K-DKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHHH
Confidence 35567778888899999999999 889999999999999998772 2 578999999987664
No 181
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=4.2e-13 Score=107.98 Aligned_cols=114 Identities=29% Similarity=0.429 Sum_probs=85.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH---------h-----------hh----------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ---------K-----------YI---------- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~---------~-----------~~---------- 87 (270)
+|.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++.++.. . +.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 4567899999999999999999999999843 34555554422110 0 00
Q ss_pred -chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 88 -GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 88 -~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
-..++..+-.+.+|...+|.++++|| |+++.|...+..+.+++..+. ...+.++|++||+.+.+.
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDE-----------PTSALDPITRREVRALLKSLQ---AQLGITVVLVTHDLDEAA 165 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 12235567778888999999999999 899999999999999998873 223678999999987665
Q ss_pred h
Q 024249 167 Q 167 (270)
Q Consensus 167 ~ 167 (270)
.
T Consensus 166 ~ 166 (178)
T cd03229 166 R 166 (178)
T ss_pred H
Confidence 4
No 182
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.43 E-value=8.5e-13 Score=108.54 Aligned_cols=113 Identities=21% Similarity=0.191 Sum_probs=80.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------------~~ 85 (270)
+|.+.++..+.|.||+|+|||||+++|++. +..+.+.+++.++. ..
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 100 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQR 100 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHH
Confidence 456889999999999999999999999984 22333333321100 00
Q ss_pred hhc---------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHH
Q 024249 86 YIG---------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML 138 (270)
Q Consensus 86 ~~~---------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~ 138 (270)
..+ ..+++.+-.+.+|...+|.++++|| |+++.|......+.
T Consensus 101 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~ 169 (204)
T PRK13538 101 LHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE-----------PFTAIDKQGVARLE 169 (204)
T ss_pred hcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCccCCHHHHHHHH
Confidence 000 1122334455567778999999999 88999999999999
Q ss_pred HHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 139 ELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 139 ~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++..+. ..+.+||++||+.+.++.
T Consensus 170 ~~l~~~~----~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 170 ALLAQHA----EQGGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHHHHH----HCCCEEEEEecChhhhcc
Confidence 9998873 235789999999888864
No 183
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.43 E-value=1.9e-12 Score=112.11 Aligned_cols=174 Identities=17% Similarity=0.239 Sum_probs=111.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh--hhchhh----------HHHHHHHHHHHhcCCeEEEE
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK--YIGEGS----------RMVRELFVMAREHAPSIIFM 111 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~--~~~~~~----------~~~~~~~~~a~~~~p~il~l 111 (270)
..++.++|.||||||||++++.+|..++.+++++++...... .+|... ......+..|. ..+.++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 346789999999999999999999999999999987654332 222210 00112233343 35678999
Q ss_pred cCCCcccCcccCCCCCCCChHHHHHHHHHHHh-----hcC----CcCCCCeEEEEEeCCCC------------Cchhhhc
Q 024249 112 DEIDSIGSARMESGSGNGDSEVQRTMLELLNQ-----LDG----FEASNKIKVLMATNRID------------ILDQALL 170 (270)
Q Consensus 112 Deid~l~~~~~~~~~~~~~~~~~~~l~~~l~~-----l~~----~~~~~~~~vi~tt~~~~------------~l~~~l~ 170 (270)
||+|.. .+.....+..+|+. +.+ +.......+|+|+|..+ .++.+++
T Consensus 141 DEin~a------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 141 DEYDAG------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred chhhcc------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 999863 34456666667663 111 11223577899998755 3466777
Q ss_pred CCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCC----CHHHHHHHc----------CCCCHHHHHHHHHHHHH
Q 024249 171 RPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI----DLKKIAEKM----------NGASGAELKAVCTEAGM 232 (270)
Q Consensus 171 r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~~~la~~~----------~g~~~~dl~~l~~~a~~ 232 (270)
. ||-..+.+..|+.++-.+|+...........+. .+..+|..+ .|+|++.+..+.+.+.+
T Consensus 209 D--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~ 282 (327)
T TIGR01650 209 D--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEI 282 (327)
T ss_pred h--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHh
Confidence 7 887778899999999999987654332110000 012233322 36788888877766553
No 184
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=4.4e-13 Score=111.56 Aligned_cols=114 Identities=25% Similarity=0.306 Sum_probs=80.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH----------------------HH------hhhc-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------VQ------KYIG- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~----------------------~~------~~~~- 88 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++ .. ...+
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV 103 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999842 333333322110 00 0000
Q ss_pred -----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH
Q 024249 89 -----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 139 (270)
Q Consensus 89 -----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~ 139 (270)
..+++.+-.+.+|....|.++++|| |+++.|...+..+.+
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE-----------Pt~~LD~~~~~~~~~ 172 (220)
T cd03293 104 PKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE-----------PFSALDALTREQLQE 172 (220)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC-----------CCCCCCHHHHHHHHH
Confidence 1122334555667778999999999 899999999999999
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 140 LLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
++..+. ...+.+||++||+++.+..
T Consensus 173 ~l~~~~---~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 173 ELLDIW---RETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred HHHHHH---HHcCCEEEEEecCHHHHHH
Confidence 998762 2346789999999886643
No 185
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.43 E-value=5.6e-13 Score=111.78 Aligned_cols=113 Identities=23% Similarity=0.289 Sum_probs=80.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH----------------------------H------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------V------ 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------~------ 83 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++..+ .
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 99 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV 99 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHH
Confidence 456789999999999999999999999973 2333333322110 0
Q ss_pred Hhhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 84 QKYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 84 ~~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
....+ ..+++.+-.+.+|....|.++++|| |+++.|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE-----------Pt~~LD~~~ 168 (232)
T cd03218 100 LEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE-----------PFAGVDPIA 168 (232)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC-----------CcccCCHHH
Confidence 00000 1122234455567778999999999 899999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+.+++..+. +.+.+||++||+++.+..
T Consensus 169 ~~~~~~~l~~~~----~~~~tii~~sH~~~~~~~ 198 (232)
T cd03218 169 VQDIQKIIKILK----DRGIGVLITDHNVRETLS 198 (232)
T ss_pred HHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 999999998873 246789999999876654
No 186
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.43 E-value=1.5e-12 Score=106.35 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=80.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH-----------------------------hhhc
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ-----------------------------KYIG 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~-----------------------------~~~~ 88 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++.. ...+
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~ 99 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN 99 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc
Confidence 466889999999999999999999999984 233434433321100 0000
Q ss_pred -------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHh
Q 024249 89 -------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 143 (270)
Q Consensus 89 -------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 143 (270)
..+++.+-.+.+|....|.++++|| |+++.|+.....+.+++..
T Consensus 100 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDE-----------P~~~LD~~~~~~l~~~l~~ 168 (195)
T PRK13541 100 SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE-----------VETNLSKENRDLLNNLIVM 168 (195)
T ss_pred cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHH
Confidence 1122334445556778999999999 8889999999999998875
Q ss_pred hcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 144 LDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 144 l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
.. ..+.++|++||+.+.+..+
T Consensus 169 ~~----~~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 169 KA----NSGGIVLLSSHLESSIKSA 189 (195)
T ss_pred HH----hCCCEEEEEeCCccccchh
Confidence 42 3467899999998877653
No 187
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=5e-13 Score=110.65 Aligned_cols=114 Identities=25% Similarity=0.331 Sum_probs=80.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-----------------------------H--Hhh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL-----------------------------V--QKY 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~-----------------------------~--~~~ 86 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++ . ...
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 99 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKL 99 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHH
Confidence 456789999999999999999999999984 2333333322110 0 000
Q ss_pred h----------------------------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 87 I----------------------------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 87 ~----------------------------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
. . ..+++.+-.+.+|...+|.++++|| |+++.|...+..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE-----------Pt~~LD~~~~~~ 168 (213)
T cd03259 100 RGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE-----------PLSALDAKLREE 168 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHHH
Confidence 0 0 1122334555567778999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+++..+. ...+.+||++||+++.+..
T Consensus 169 l~~~l~~~~---~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 169 LREELKELQ---RELGITTIYVTHDQEEALA 196 (213)
T ss_pred HHHHHHHHH---HHcCCEEEEEecCHHHHHH
Confidence 999998873 2236789999999876654
No 188
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=1.3e-11 Score=109.23 Aligned_cols=189 Identities=14% Similarity=0.142 Sum_probs=117.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe-------EEEE-
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------FIRV- 77 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~-------~i~i- 77 (270)
..|..+++|.|.++.++.+...+..- ..+..+||+||+|+||||+++.+|+.+.+. ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 45778899999999999999888763 345679999999999999999999866441 1000
Q ss_pred ---cchh---HHH----------hh--h-------chhhHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCCCCCC
Q 024249 78 ---SGSE---LVQ----------KY--I-------GEGSRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGN 128 (270)
Q Consensus 78 ---~~~~---~~~----------~~--~-------~~~~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~~~~~ 128 (270)
.|.. +.. .. . .-....++.+.... ......|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 0110 000 00 0 00112233333222 2345679999998875
Q ss_pred CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCH
Q 024249 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDL 208 (270)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~ 208 (270)
+....+.+...+++- ..+..+|++|+.++.+.+.+++ |+ ..+.+++|+.++-.++++....... ..+...
T Consensus 154 -~~~aanaLLk~LEEp-----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~ 223 (351)
T PRK09112 154 -NRNAANAILKTLEEP-----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEIT 223 (351)
T ss_pred -CHHHHHHHHHHHhcC-----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHH
Confidence 233444555555432 2356677778888888888877 55 5899999999999999887432211 111224
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q 024249 209 KKIAEKMNGASGAELKAVCT 228 (270)
Q Consensus 209 ~~la~~~~g~~~~dl~~l~~ 228 (270)
..++..+.| +++....++.
T Consensus 224 ~~i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 224 EALLQRSKG-SVRKALLLLN 242 (351)
T ss_pred HHHHHHcCC-CHHHHHHHHh
Confidence 556666666 4544444443
No 189
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.42 E-value=1.1e-12 Score=106.69 Aligned_cols=110 Identities=21% Similarity=0.367 Sum_probs=76.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-------------------------HH--------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL-------------------------VQ-------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~-------------------------~~-------- 84 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++ ..
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~ 91 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVA 91 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHH
Confidence 456889999999999999999999999973 2223333222110 00
Q ss_pred ---hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ---KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ---~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
...+ ..+++.+-.+.+|....|.++++|| |+++.|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~~LD~ 160 (190)
T TIGR01166 92 FGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE-----------PTAGLDP 160 (190)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCH
Confidence 0000 1112234444556778999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
.....+.+++..+. +.+.+||++||+++.
T Consensus 161 ~~~~~~~~~l~~~~----~~~~tili~sH~~~~ 189 (190)
T TIGR01166 161 AGREQMLAILRRLR----AEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHH----HcCCEEEEEeecccc
Confidence 99999999998873 236789999999764
No 190
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.42 E-value=7.6e-13 Score=109.59 Aligned_cols=113 Identities=27% Similarity=0.481 Sum_probs=80.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH------------------------------H---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV------------------------------Q--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~------------------------------~--- 84 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++. .
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVA 101 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHH
Confidence 4567899999999999999999999999842 3333333221100 0
Q ss_pred ---hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ---KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ---~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
...+ ..+++.+-.+.+|....|.++++|| |+++.|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDE-----------Pt~~LD~ 170 (214)
T TIGR02673 102 LPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADE-----------PTGNLDP 170 (214)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC-----------CcccCCH
Confidence 0000 1122334445557778999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. +.+.+||++||+++.+..
T Consensus 171 ~~~~~l~~~l~~~~----~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 171 DLSERILDLLKRLN----KRGTTVIVATHDLSLVDR 202 (214)
T ss_pred HHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHH
Confidence 99999999998873 236789999999876654
No 191
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.42 E-value=4.9e-13 Score=110.63 Aligned_cols=114 Identities=25% Similarity=0.281 Sum_probs=79.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH-------------------------H---H---hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-------------------------V---Q---KY 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~-------------------------~---~---~~ 86 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++ . . ..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 99 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL 99 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHh
Confidence 4567899999999999999999999999842 223333222110 0 0 00
Q ss_pred hc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 87 IG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 87 ~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
.+ ..+++.+-.+.+|...+|.++++|| |+++.|+..+..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE-----------Pt~~LD~~~~~~ 168 (213)
T cd03301 100 RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE-----------PLSNLDAKLRVQ 168 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHHH
Confidence 00 1122334455567778999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+++..+. .+.+.+||++||+++.+..
T Consensus 169 l~~~l~~~~---~~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 169 MRAELKRLQ---QRLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred HHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 999998873 2336789999999876554
No 192
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.42 E-value=8.4e-13 Score=109.32 Aligned_cols=113 Identities=27% Similarity=0.471 Sum_probs=80.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++.
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~ 100 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVA 100 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHH
Confidence 356789999999999999999999999984 33444444332110
Q ss_pred --Hhhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 84 --QKYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 84 --~~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
....+ ..+++.+-.+.+|....|.++++|| |+++.|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~~LD~ 169 (214)
T cd03292 101 FALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE-----------PTGNLDP 169 (214)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeC-----------CCCcCCH
Confidence 00000 1122234445557778999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. +.+.++|++||+.+.+..
T Consensus 170 ~~~~~~~~~l~~~~----~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 170 DTTWEIMNLLKKIN----KAGTTVVVATHAKELVDT 201 (214)
T ss_pred HHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHH
Confidence 99999999998873 236789999999876654
No 193
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=4.9e-13 Score=112.96 Aligned_cols=141 Identities=23% Similarity=0.417 Sum_probs=104.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.++.|..+.+.|.||+|||||+|++.. ++..+-+.+++.++.
T Consensus 26 sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA 105 (339)
T COG1135 26 SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA 105 (339)
T ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhh
Confidence 56789999999999999999999999985 566777777764321
Q ss_pred ------------------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 84 ------------------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 84 ------------------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
..|+. .++++.+..+++|.+.+|.||+.|| +++.+||
T Consensus 106 ~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DE-----------aTSALDP 174 (339)
T COG1135 106 FPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDE-----------ATSALDP 174 (339)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecC-----------ccccCCh
Confidence 11121 3456678888999999999999999 7889999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh-----hcCCCCcceEE----EeCCCCHHHHHHHHH
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA-----LLRPGRIDRKI----EFPNPNEESRLDILK 194 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~-----l~r~~r~~~~i----~~~~p~~~~r~~il~ 194 (270)
+..+.+.++|..++ ..-+++|++.||.++.+-.. +...|++-+.= -|..|..+--++++.
T Consensus 175 ~TT~sIL~LL~~In---~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~ 243 (339)
T COG1135 175 ETTQSILELLKDIN---RELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIG 243 (339)
T ss_pred HHHHHHHHHHHHHH---HHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHHHHH
Confidence 99999999999985 56799999999999877653 34455542221 134555544444444
No 194
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.42 E-value=6.8e-13 Score=110.18 Aligned_cols=113 Identities=25% Similarity=0.345 Sum_probs=80.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH--------------------------------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------------------------------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~--------------------------------~~ 85 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++. ..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 104 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAG 104 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHH
Confidence 3567889999999999999999999999842 3343433321110 00
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..+++.+-.+.+|....|.++++|| |+++.|.....
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE-----------Pt~~LD~~~~~ 173 (218)
T cd03266 105 LYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE-----------PTTGLDVMATR 173 (218)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC-----------CCcCCCHHHHH
Confidence 000 1122334455567778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. +.+.+||++||+++.+..
T Consensus 174 ~l~~~l~~~~----~~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 174 ALREFIRQLR----ALGKCILFSTHIMQEVER 201 (218)
T ss_pred HHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 9999998873 236789999999876654
No 195
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.42 E-value=5.8e-13 Score=107.59 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=82.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------h------h---------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ----------------K------Y--------- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~----------------~------~--------- 86 (270)
++.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++.. . +
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l 99 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI 99 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH
Confidence 456788999999999999999999999984 234444444322100 0 0
Q ss_pred -h---chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 87 -I---GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 87 -~---~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
. -...++.+-.+.+|...+|.++++|| |.++.|...+..+.+++..+. ..+.++|++||+.
T Consensus 100 ~~~~~LS~G~~qrl~la~al~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~ 164 (182)
T cd03215 100 ALSSLLSGGNQQKVVLARWLARDPRVLILDE-----------PTRGVDVGAKAEIYRLIRELA----DAGKAVLLISSEL 164 (182)
T ss_pred HHHhhcCHHHHHHHHHHHHHccCCCEEEECC-----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCH
Confidence 0 01123345567778889999999999 899999999999999998873 2367899999998
Q ss_pred CCchh
Q 024249 163 DILDQ 167 (270)
Q Consensus 163 ~~l~~ 167 (270)
+.+..
T Consensus 165 ~~~~~ 169 (182)
T cd03215 165 DELLG 169 (182)
T ss_pred HHHHH
Confidence 76654
No 196
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.42 E-value=5.4e-13 Score=104.55 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=88.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~~--------------------------------- 84 (270)
++.++.+..+.+.||+|+|||||++.||+ .+..+.+.+++.+...
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 45678899999999999999999999998 4566777776654310
Q ss_pred --------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 85 --------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 85 --------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
..++ .+.++.+.+++++.-....|+++|| |.+..|+..+..
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE-----------PFsALdP~LR~e 167 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE-----------PFSALDPALRAE 167 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC-----------chhhcCHHHHHH
Confidence 0111 2445667777777766666999999 889999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+..++..+ ....+.++++.||.++++-..
T Consensus 168 Ml~Lv~~l---~~E~~~TllmVTH~~~Da~~i 196 (231)
T COG3840 168 MLALVSQL---CDERKMTLLMVTHHPEDAARI 196 (231)
T ss_pred HHHHHHHH---HHhhCCEEEEEeCCHHHHHHh
Confidence 99999888 356688999999999877543
No 197
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=1.6e-12 Score=105.98 Aligned_cols=109 Identities=22% Similarity=0.218 Sum_probs=82.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh----cCCeEEEEcchhHHH-----------------------h-----h-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSGSELVQ-----------------------K-----Y- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~----~~~~~i~i~~~~~~~-----------------------~-----~- 86 (270)
+|.+.++..+.|.||||+|||||++.|++. +..+.+.+++.++.. . .
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL 106 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence 356788999999999999999999999973 345555555433210 0 0
Q ss_pred -hchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 87 -IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 87 -~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
.-...+..+-.+.+|...+|.++++|| |.++.|...+..+.+++..+. +.+.++|++||+++
T Consensus 107 ~~LSgGe~qrv~la~al~~~p~vlllDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiiivtH~~~ 169 (192)
T cd03232 107 RGLSVEQRKRLTIGVELAAKPSILFLDE-----------PTSGLDSQAAYNIVRFLKKLA----DSGQAILCTIHQPS 169 (192)
T ss_pred hcCCHHHhHHHHHHHHHhcCCcEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----HcCCEEEEEEcCCh
Confidence 001234456667788889999999999 889999999999999998873 23678999999976
No 198
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.42 E-value=6.5e-13 Score=108.90 Aligned_cols=112 Identities=25% Similarity=0.347 Sum_probs=84.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh----cCCeEEEEcchhHHH-------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSGSELVQ------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~----~~~~~i~i~~~~~~~------------------------------- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~ 99 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR 99 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh
Confidence 356789999999999999999999999986 345556655432210
Q ss_pred hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 85 KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 85 ~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
.... ...+..+-.+.+|....|.++++|| |+++.|......+.+++..+. +.+.++|++||++
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDE-----------Pt~~LD~~~~~~l~~~L~~~~----~~~~tiii~sh~~ 164 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDE-----------PDSGLDIDALRLVAEVINKLR----EEGKSVLIITHYQ 164 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH----HCCCEEEEEecCH
Confidence 0000 1234556777888889999999999 899999999999999998873 2367899999998
Q ss_pred CCch
Q 024249 163 DILD 166 (270)
Q Consensus 163 ~~l~ 166 (270)
+.+.
T Consensus 165 ~~~~ 168 (200)
T cd03217 165 RLLD 168 (200)
T ss_pred HHHH
Confidence 7554
No 199
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=4.8e-13 Score=118.79 Aligned_cols=114 Identities=24% Similarity=0.255 Sum_probs=84.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.++..+.|.||||||||||+++||+. +..+.+.+++.++.
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~ 103 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKI 103 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhh
Confidence 456788999999999999999999999983 34455544432210
Q ss_pred -------------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 84 -------------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 84 -------------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
..++. .++++.+-.+.+|....|.++++|| |.++.|...+..
T Consensus 104 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE-----------P~s~LD~~~r~~ 172 (356)
T PRK11650 104 RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE-----------PLSNLDAKLRVQ 172 (356)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHH
Confidence 00000 2334456677778889999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+.+..+. ...+.++|++||+.+.+..
T Consensus 173 l~~~l~~l~---~~~g~tii~vTHd~~ea~~ 200 (356)
T PRK11650 173 MRLEIQRLH---RRLKTTSLYVTHDQVEAMT 200 (356)
T ss_pred HHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 999888773 3347899999999876543
No 200
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.41 E-value=1.5e-12 Score=106.82 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=80.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------Hh-h----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------QK-Y---- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------~~-~---- 86 (270)
+|.+.+|..+.|.||+|+|||||+++|++. +..+-+.+++.++. .. .
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~ 100 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIH 100 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHh
Confidence 356789999999999999999999999984 23344444332110 00 0
Q ss_pred ------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHH
Q 024249 87 ------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 140 (270)
Q Consensus 87 ------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~ 140 (270)
++ ...+..+-.+.+|...+|.++++|| |+++.|...+..+.++
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE-----------P~~~LD~~~~~~l~~~ 169 (200)
T PRK13540 101 FSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE-----------PLVALDELSLLTIITK 169 (200)
T ss_pred cCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCcccCHHHHHHHHHH
Confidence 00 1122334455567778999999999 8999999999999999
Q ss_pred HHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 141 LNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 141 l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+. ..+.++|++||+...++.
T Consensus 170 l~~~~----~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 170 IQEHR----AKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHH----HcCCEEEEEeCCchhccc
Confidence 98862 236789999999887764
No 201
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.41 E-value=5.6e-13 Score=117.60 Aligned_cols=114 Identities=24% Similarity=0.403 Sum_probs=84.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++..
T Consensus 25 sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~ 104 (343)
T TIGR02314 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVA 104 (343)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHH
Confidence 456789999999999999999999999973 334555444322100
Q ss_pred -------------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 -------------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 -------------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.++. .++++.+-.+++|....|.++++|| |+++.|+
T Consensus 105 ~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDE-----------Pts~LD~ 173 (343)
T TIGR02314 105 LPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDE-----------ATSALDP 173 (343)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC-----------CcccCCH
Confidence 0000 2233456666778889999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.....+.+++..+. .+.+.+||++||+++.+..
T Consensus 174 ~t~~~i~~lL~~l~---~~~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 174 ATTQSILELLKEIN---RRLGLTILLITHEMDVVKR 206 (343)
T ss_pred HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 99999999999884 2347899999999887654
No 202
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.41 E-value=9.6e-13 Score=108.51 Aligned_cols=113 Identities=21% Similarity=0.301 Sum_probs=80.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-------------------------------Hhh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV-------------------------------QKY 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~-------------------------------~~~ 86 (270)
+|.+.++..+.|.||||+|||||++.|++. +..+.+.+++.++. ...
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 99 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARL 99 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHh
Confidence 456789999999999999999999999974 23344444332110 000
Q ss_pred hc--------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHH
Q 024249 87 IG--------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 140 (270)
Q Consensus 87 ~~--------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~ 140 (270)
.+ ..+++.+-.+.+|....|.++++|| |+++.|...+..+.++
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~ 168 (208)
T cd03268 100 LGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE-----------PTNGLDPDGIKELREL 168 (208)
T ss_pred cCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC-----------CcccCCHHHHHHHHHH
Confidence 00 1122334445567778999999999 8999999999999999
Q ss_pred HHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 141 LNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 141 l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+. +.+.++|++||+++.+..
T Consensus 169 l~~~~----~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 169 ILSLR----DQGITVLISSHLLSEIQK 191 (208)
T ss_pred HHHHH----HCCCEEEEEcCCHHHHHH
Confidence 98873 246789999999886654
No 203
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=7.9e-13 Score=110.01 Aligned_cols=114 Identities=22% Similarity=0.350 Sum_probs=81.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-----------------------------H---h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV-----------------------------Q---K 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~-----------------------------~---~ 85 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++. . .
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (220)
T cd03265 20 SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHAR 99 (220)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHH
Confidence 456789999999999999999999999984 33344433321100 0 0
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..+++.+-.+.+|....|.++++|| |+++.|.....
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE-----------Pt~~LD~~~~~ 168 (220)
T cd03265 100 LYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE-----------PTIGLDPQTRA 168 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CccCCCHHHHH
Confidence 000 1122334455567778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. .+.+.+||++||+.+.+..
T Consensus 169 ~l~~~l~~~~---~~~~~tvi~~tH~~~~~~~ 197 (220)
T cd03265 169 HVWEYIEKLK---EEFGMTILLTTHYMEEAEQ 197 (220)
T ss_pred HHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 9999998873 2336789999999887654
No 204
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.41 E-value=1.1e-12 Score=109.15 Aligned_cols=113 Identities=23% Similarity=0.358 Sum_probs=78.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH-----------hh--------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ-----------KY-------------------- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~-----------~~-------------------- 86 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++.. ..
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 104 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV 104 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHH
Confidence 456789999999999999999999999974 223333333211100 00
Q ss_pred --------hc----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 87 --------IG----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 87 --------~~----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.. ..+++.+-.+.++....|.++++|| |+++.|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE-----------Pt~~LD 173 (221)
T TIGR02211 105 AMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADE-----------PTGNLD 173 (221)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC-----------CCCcCC
Confidence 00 1112234445556778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
......+.+++..+. .+.+.+||++||+++.+.
T Consensus 174 ~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~~ 206 (221)
T TIGR02211 174 NNNAKIIFDLMLELN---RELNTSFLVVTHDLELAK 206 (221)
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHh
Confidence 999999999998773 233678999999987553
No 205
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.41 E-value=7.7e-13 Score=109.33 Aligned_cols=113 Identities=28% Similarity=0.460 Sum_probs=79.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------H-----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV----------------------------Q----- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~----------------------------~----- 84 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++. .
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~ 100 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG 100 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHH
Confidence 356788999999999999999999999974 22333333221100 0
Q ss_pred -hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 85 -KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 85 -~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
...+ ..+++.+-.+.+|....|.++++|| |+++.|...
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE-----------Pt~~LD~~~ 169 (211)
T cd03225 101 LENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE-----------PTAGLDPAG 169 (211)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHH
Confidence 0000 1112234444556778899999999 899999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
...+.+++..+. ..+.+||++||+++.+..
T Consensus 170 ~~~~~~~l~~~~----~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 170 RRELLELLKKLK----AEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred HHHHHHHHHHHH----HcCCEEEEEeCCHHHHHH
Confidence 999999998873 236789999999876654
No 206
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=6.8e-11 Score=105.15 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=107.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeE-----------
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF----------- 74 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~----------- 74 (270)
.+|.++++|+|.+..++.+.+.+..- .-+..+||+||+|+||++++.++|+.+-|.-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 56889999999999999999888863 3466799999999999999999998543211
Q ss_pred --EEEc--chh---HHHh--------hh---c--------hhhHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCC
Q 024249 75 --IRVS--GSE---LVQK--------YI---G--------EGSRMVRELFVMA----REHAPSIIFMDEIDSIGSARMES 124 (270)
Q Consensus 75 --i~i~--~~~---~~~~--------~~---~--------~~~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~ 124 (270)
..+. |.. +... .+ + -....++.+...+ ....|.|++|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 0000 110 0000 00 0 0122344444433 2356789999998764
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHh
Q 024249 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH 196 (270)
Q Consensus 125 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~ 196 (270)
+....+.+...+++- ..+..+|++|++++.+.+.+++ |. ..+.+++|+.++-.+++...
T Consensus 154 -----~~~aanaLLK~LEep-----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 154 -----NANAANALLKVLEEP-----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred -----CHHHHHHHHHHHhcC-----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHh
Confidence 344555555555432 3456788899999988888766 43 56899999999988888765
No 207
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.40 E-value=1.3e-12 Score=109.92 Aligned_cols=113 Identities=25% Similarity=0.351 Sum_probs=80.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-----------------------------H---h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV-----------------------------Q---K 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~-----------------------------~---~ 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. . .
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 100 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAA 100 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHH
Confidence 456789999999999999999999999974 23344433321110 0 0
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..++..+-.+.+|...+|.++++|| |+++.|...+.
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE-----------P~~~LD~~~~~ 169 (236)
T TIGR03864 101 LHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE-----------PTVGLDPASRA 169 (236)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CccCCCHHHHH
Confidence 000 1122334455667778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.+.+++..+. .+.+.++|++||+++.+.
T Consensus 170 ~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 170 AIVAHVRALC---RDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHHHHH---HhCCCEEEEEecChhhHh
Confidence 9999998873 224678999999998775
No 208
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.40 E-value=2.1e-12 Score=105.32 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=83.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc----CCeEEEEcchhHHH------------------------h-----h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSELVQ------------------------K-----Y 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----~~~~i~i~~~~~~~------------------------~-----~ 86 (270)
+|.+.++..+.|.||+|+|||||++.|++.. ..+.+.+++.++.. . .
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 3567899999999999999999999999854 34545444322100 0 0
Q ss_pred --hchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC-
Q 024249 87 --IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID- 163 (270)
Q Consensus 87 --~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~- 163 (270)
.-...+..+-.+.+|...+|.++++|| |+++.|...+..+.+++..+. +.+.++|++||+++
T Consensus 109 ~~~LS~G~~qrv~laral~~~p~illlDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~ 173 (194)
T cd03213 109 LRGLSGGERKRVSIALELVSNPSLLFLDE-----------PTSGLDSSSALQVMSLLRRLA----DTGRTIICSIHQPSS 173 (194)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCchH
Confidence 011234556677888889999999999 889999999999999998873 23688999999986
Q ss_pred Cch
Q 024249 164 ILD 166 (270)
Q Consensus 164 ~l~ 166 (270)
.+.
T Consensus 174 ~~~ 176 (194)
T cd03213 174 EIF 176 (194)
T ss_pred HHH
Confidence 343
No 209
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=1.5e-12 Score=108.12 Aligned_cols=117 Identities=22% Similarity=0.331 Sum_probs=89.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHHhh----------hc-------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKY----------IG------------------- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~~~----------~~------------------- 88 (270)
+|.+++|..+++.||||+||||++|.+.+. +..+.+.+++..-.... .|
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~ 123 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLK 123 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHH
Confidence 467899999999999999999999999984 55677777664321100 00
Q ss_pred ----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 89 ----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 89 ----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
..+++++.-+..+.-+.|.|+|||| |+-+.|-..+
T Consensus 124 ~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE-----------pTvgLDV~aq 192 (325)
T COG4586 124 LIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDE-----------PTVGLDVNAQ 192 (325)
T ss_pred HHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecC-----------CccCcchhHH
Confidence 2234455556667889999999999 7888999999
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhc
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALL 170 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~ 170 (270)
..+.+++++.+ ...+.+|+.|||..+.+.....
T Consensus 193 ~~ir~Flke~n---~~~~aTVllTTH~~~di~~lc~ 225 (325)
T COG4586 193 ANIREFLKEYN---EERQATVLLTTHIFDDIATLCD 225 (325)
T ss_pred HHHHHHHHHHH---HhhCceEEEEecchhhHHHhhh
Confidence 99999999885 4568999999999998876443
No 210
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.40 E-value=8e-13 Score=115.20 Aligned_cols=113 Identities=26% Similarity=0.371 Sum_probs=81.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH--------------------------------HHh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL--------------------------------VQK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~--------------------------------~~~ 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ ...
T Consensus 24 sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 103 (303)
T TIGR01288 24 SFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGR 103 (303)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHH
Confidence 356789999999999999999999999984 3344444432110 000
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..+++.+-.+.+|....|.++++|| |+++.|+..+.
T Consensus 104 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE-----------Pt~gLD~~~~~ 172 (303)
T TIGR01288 104 YFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE-----------PTTGLDPHARH 172 (303)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCcCCCHHHHH
Confidence 000 1122234445567778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. ..+.+||++||+++.+..
T Consensus 173 ~l~~~l~~~~----~~g~til~~sH~~~~~~~ 200 (303)
T TIGR01288 173 LIWERLRSLL----ARGKTILLTTHFMEEAER 200 (303)
T ss_pred HHHHHHHHHH----hCCCEEEEECCCHHHHHH
Confidence 9999998873 246899999999887654
No 211
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.40 E-value=1.6e-12 Score=107.80 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=81.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchh------------------------HHHh-----hh-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE------------------------LVQK-----YI- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~------------------------~~~~-----~~- 87 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.. +... ..
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 110 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH 110 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhc
Confidence 4568899999999999999999999999732 22322222210 0000 00
Q ss_pred c---------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHH
Q 024249 88 G---------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 140 (270)
Q Consensus 88 ~---------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~ 140 (270)
+ ...++.+-.+.++...+|.++++|| |+++.|......+.++
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~ 179 (214)
T PRK13543 111 GRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE-----------PYANLDLEGITLVNRM 179 (214)
T ss_pred CCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHH
Confidence 0 1122334555667778999999999 8899999999999999
Q ss_pred HHhhcCCcCCCCeEEEEEeCCCCCchhhh
Q 024249 141 LNQLDGFEASNKIKVLMATNRIDILDQAL 169 (270)
Q Consensus 141 l~~l~~~~~~~~~~vi~tt~~~~~l~~~l 169 (270)
+..+. +.+.++|++||+.+.+....
T Consensus 180 l~~~~----~~~~tiii~sH~~~~~~~~~ 204 (214)
T PRK13543 180 ISAHL----RGGGAALVTTHGAYAAPPVR 204 (214)
T ss_pred HHHHH----hCCCEEEEEecChhhhhhhc
Confidence 98773 23578999999998887643
No 212
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.40 E-value=1e-12 Score=108.69 Aligned_cols=113 Identities=22% Similarity=0.415 Sum_probs=79.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH-----------------------------HH----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-----------------------------VQ---- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~-----------------------------~~---- 84 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++ ..
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~ 99 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITL 99 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHh
Confidence 4567899999999999999999999999842 333333332111 00
Q ss_pred --h-hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 --K-YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 --~-~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
. ..+ ..+++.+-.+.+|...+|.++++|| |+++.|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE-----------P~~~LD~ 168 (213)
T cd03262 100 APIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE-----------PTSALDP 168 (213)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCH
Confidence 0 000 0112223444456678899999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. +.+.+||++||+++.+..
T Consensus 169 ~~~~~l~~~l~~~~----~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 169 ELVGEVLDVMKDLA----EEGMTMVVVTHEMGFARE 200 (213)
T ss_pred HHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHH
Confidence 99999999998873 236789999999877654
No 213
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.40 E-value=1.3e-12 Score=108.65 Aligned_cols=112 Identities=19% Similarity=0.306 Sum_probs=79.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------------~~ 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 101 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYAR 101 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHH
Confidence 356789999999999999999999999974 23343333322110 00
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..+++.+-.+.+|....|.++++|| |+++.|.....
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE-----------P~~~LD~~~~~ 170 (220)
T cd03263 102 LKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE-----------PTSGLDPASRR 170 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC-----------CCCCCCHHHHH
Confidence 000 1122234445556778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. . +.+||++||+++.+..
T Consensus 171 ~l~~~l~~~~----~-~~tii~~sH~~~~~~~ 197 (220)
T cd03263 171 AIWDLILEVR----K-GRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHHHHHHh----c-CCEEEEEcCCHHHHHH
Confidence 9999998873 2 3789999999887654
No 214
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=1.1e-12 Score=110.09 Aligned_cols=114 Identities=21% Similarity=0.410 Sum_probs=80.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH----------Hh----------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------QK---------------------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~----------~~---------------------- 85 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++. ..
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 104 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVA 104 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHH
Confidence 4668899999999999999999999999842 2343433322110 00
Q ss_pred ----hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 86 ----YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 86 ----~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
..+ ..+++.+-.+.+|....|.++++|| |+++.|.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE-----------P~~~LD~ 173 (233)
T cd03258 105 LPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE-----------ATSALDP 173 (233)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC-----------CCCcCCH
Confidence 000 1122234444556778999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.....+.+++..+. .+.+.+||++||+++.+..
T Consensus 174 ~~~~~l~~~l~~~~---~~~~~tvii~sH~~~~~~~ 206 (233)
T cd03258 174 ETTQSILALLRDIN---RELGLTIVLITHEMEVVKR 206 (233)
T ss_pred HHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 99999999998872 2336789999999877654
No 215
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.39 E-value=1e-12 Score=116.69 Aligned_cols=114 Identities=23% Similarity=0.346 Sum_probs=83.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.+|+.+.|.||||||||||+++|++. +..+.+.+++.++..
T Consensus 13 s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi 92 (363)
T TIGR01186 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNT 92 (363)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHH
Confidence 456889999999999999999999999974 334444443321100
Q ss_pred --------------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 --------------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 --------------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.++. .++++.+-.+.+|...+|.|+++|| |.++.|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE-----------P~saLD 161 (363)
T TIGR01186 93 SLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE-----------AFSALD 161 (363)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCC
Confidence 0000 1233445566778889999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+..+.+.+..+. ...+.+||++||+.+.+..
T Consensus 162 ~~~r~~l~~~l~~l~---~~~~~Tii~vTHd~~ea~~ 195 (363)
T TIGR01186 162 PLIRDSMQDELKKLQ---ATLQKTIVFITHDLDEAIR 195 (363)
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 999999999988873 3346899999999887654
No 216
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.39 E-value=1.3e-12 Score=109.02 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=80.0
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH---------------------Hhhh----------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------QKYI---------- 87 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------~~~~---------- 87 (270)
|.+.++..+.|.||||+|||||+++|++. +..+.+.+++..+. ....
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 122 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK 122 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 56789999999999999999999999984 33344433321100 0000
Q ss_pred ------------------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCC
Q 024249 88 ------------------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF 147 (270)
Q Consensus 88 ------------------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 147 (270)
. ...++.+-.+.++....|.++++|| |+++.|...+..+.+++..+.
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE-----------P~~gLD~~~~~~~~~~l~~~~-- 189 (224)
T cd03220 123 IDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE-----------VLAVGDAAFQEKCQRRLRELL-- 189 (224)
T ss_pred HHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH--
Confidence 0 1122334455667778999999999 899999999999999998773
Q ss_pred cCCCCeEEEEEeCCCCCchh
Q 024249 148 EASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 148 ~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+.+||++||+.+.+..
T Consensus 190 --~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 190 --KQGKTVILVSHDPSSIKR 207 (224)
T ss_pred --hCCCEEEEEeCCHHHHHH
Confidence 236789999999877654
No 217
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=7.4e-13 Score=117.31 Aligned_cols=113 Identities=28% Similarity=0.367 Sum_probs=84.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH------------------------------H---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV------------------------------Q--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~------------------------------~--- 84 (270)
+|.+.++..+.|.||||||||||+++|++. +..+.+.+++.++. .
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~ 105 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKM 105 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhH
Confidence 456889999999999999999999999983 34454544432210 0
Q ss_pred --------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 85 --------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 85 --------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
.++. .+.++.+-.+.+|...+|.++++|| |.++.|...+..
T Consensus 106 ~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDE-----------P~s~LD~~~r~~ 174 (351)
T PRK11432 106 LGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDE-----------PLSNLDANLRRS 174 (351)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC-----------CcccCCHHHHHH
Confidence 0000 2334456667778889999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+...+..+. .+.+.++|++||+.+.+.
T Consensus 175 l~~~l~~l~---~~~g~tii~vTHd~~e~~ 201 (351)
T PRK11432 175 MREKIRELQ---QQFNITSLYVTHDQSEAF 201 (351)
T ss_pred HHHHHHHHH---HhcCCEEEEEcCCHHHHH
Confidence 999888873 334789999999988654
No 218
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.2e-12 Score=109.95 Aligned_cols=114 Identities=20% Similarity=0.356 Sum_probs=79.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-------------------------------HHh-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL-------------------------------VQK- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~-------------------------------~~~- 85 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++ ...
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 108 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENV 108 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHH
Confidence 456789999999999999999999999984 2334333332110 000
Q ss_pred -h---h-c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 86 -Y---I-G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 86 -~---~-~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. . + ...++.+-.+.+|...+|.++++|| |+++.|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE-----------Pt~~LD 177 (233)
T PRK11629 109 AMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADE-----------PTGNLD 177 (233)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCCCC
Confidence 0 0 0 1112233444556778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
......+.+++..+. ...+.+||++||+.+.+..
T Consensus 178 ~~~~~~l~~~l~~~~---~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 178 ARNADSIFQLLGELN---RLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred HHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHHHh
Confidence 999999999998873 2346889999999876553
No 219
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=9.4e-13 Score=111.99 Aligned_cols=114 Identities=25% Similarity=0.317 Sum_probs=80.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH----------------------HHh------hhc-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------VQK------YIG- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~----------------------~~~------~~~- 88 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ ... ..+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 100 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGV 100 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCC
Confidence 4567899999999999999999999999842 233333322110 000 000
Q ss_pred -----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH
Q 024249 89 -----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 139 (270)
Q Consensus 89 -----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~ 139 (270)
..+++.+-.+.+|...+|.++++|| |+++.|......+.+
T Consensus 101 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE-----------Pt~~LD~~~~~~l~~ 169 (255)
T PRK11248 101 EKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE-----------PFGALDAFTREQMQT 169 (255)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCccCCHHHHHHHHH
Confidence 1122334555567778999999999 899999999999999
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 140 LLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
++..+. ...+.+||++||+++.+..
T Consensus 170 ~L~~~~---~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 170 LLLKLW---QETGKQVLLITHDIEEAVF 194 (255)
T ss_pred HHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 998872 2236789999999887654
No 220
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.4e-12 Score=102.84 Aligned_cols=114 Identities=27% Similarity=0.396 Sum_probs=86.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH-------hhh-----chhhHHHHHHHHHHHhcC
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ-------KYI-----GEGSRMVRELFVMAREHA 105 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~-------~~~-----~~~~~~~~~~~~~a~~~~ 105 (270)
++.+.++..++|.||+|+|||||+++|++.. ..+.+.+++..+.. ... -...+..+-.+.++....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 3567889999999999999999999999853 45666776643221 111 123455666788888899
Q ss_pred CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 106 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 106 p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
|.++++|| |+.+.|......+.+.+..+. . .+.+++++||+.+.+...
T Consensus 99 ~~i~ilDE-----------p~~~lD~~~~~~l~~~l~~~~---~-~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 99 PDLLLLDE-----------PTSGLDPASRERLLELLRELA---E-EGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH---H-CCCEEEEEeCCHHHHHHh
Confidence 99999999 888999999998999888773 2 257899999998877653
No 221
>PRK10908 cell division protein FtsE; Provisional
Probab=99.39 E-value=1.8e-12 Score=107.97 Aligned_cols=113 Identities=24% Similarity=0.418 Sum_probs=79.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH----------h----------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ----------K---------------------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~----------~---------------------- 85 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++.. .
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVA 101 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHH
Confidence 4567899999999999999999999999842 33444433321100 0
Q ss_pred ----hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 86 ----YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 86 ----~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
..+ ...++.+-.+.+|....|.++++|| |+++.|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~~LD~ 170 (222)
T PRK10908 102 IPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE-----------PTGNLDD 170 (222)
T ss_pred hHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CCCcCCH
Confidence 000 0112234444556778899999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. ..+.++|++||+++.+..
T Consensus 171 ~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 171 ALSEGILRLFEEFN----RVGVTVLMATHDIGLISR 202 (222)
T ss_pred HHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 99999999998873 236789999999887654
No 222
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.2e-12 Score=110.07 Aligned_cols=114 Identities=19% Similarity=0.313 Sum_probs=80.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH------------------------------H---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV------------------------------Q--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~------------------------------~--- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++. .
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 99 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVA 99 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHH
Confidence 3568899999999999999999999999842 3344443321100 0
Q ss_pred ---h-hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ---K-YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ---~-~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. ..+ ..+++.+-.+.+|....|.++++|| |+++.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDE-----------Pt~~LD 168 (235)
T cd03261 100 FPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE-----------PTAGLD 168 (235)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC-----------CcccCC
Confidence 0 000 1122334455567778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
......+.+++..+. .+.+.+||++||+++.+..
T Consensus 169 ~~~~~~l~~~l~~~~---~~~~~tvi~vsH~~~~~~~ 202 (235)
T cd03261 169 PIASGVIDDLIRSLK---KELGLTSIMVTHDLDTAFA 202 (235)
T ss_pred HHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHHHH
Confidence 999999999998873 2236789999999886654
No 223
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.39 E-value=8.1e-13 Score=117.22 Aligned_cols=114 Identities=26% Similarity=0.368 Sum_probs=85.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH------------------------------H---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV------------------------------Q--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~------------------------------~--- 84 (270)
+|.+.++..+.|.||||||||||+++||+. +..+.+.+++.++. .
T Consensus 24 s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~ 103 (353)
T TIGR03265 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKN 103 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHh
Confidence 456788999999999999999999999984 34455555442210 0
Q ss_pred --------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 85 --------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 85 --------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
.++. .+.++.+-.+.+|....|.++++|| |.++.|...+..
T Consensus 104 ~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDE-----------P~s~LD~~~r~~ 172 (353)
T TIGR03265 104 RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE-----------PLSALDARVREH 172 (353)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHHH
Confidence 0000 2334456677778889999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+...+..+. ...+.++|++||+.+.+..
T Consensus 173 l~~~L~~l~---~~~~~tvi~vTHd~~ea~~ 200 (353)
T TIGR03265 173 LRTEIRQLQ---RRLGVTTIMVTHDQEEALS 200 (353)
T ss_pred HHHHHHHHH---HhcCCEEEEEcCCHHHHHH
Confidence 999998873 3347899999999886543
No 224
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.39 E-value=2.3e-12 Score=106.68 Aligned_cols=113 Identities=25% Similarity=0.391 Sum_probs=79.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH------------------------HHh----hh--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL------------------------VQK----YI-- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~------------------------~~~----~~-- 87 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++ ... ..
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~ 98 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGH 98 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccc
Confidence 456789999999999999999999999984 2333333332110 000 00
Q ss_pred --------c--------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 88 --------G--------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 88 --------~--------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
. ..+++.+-.+.+|...+|.++++|| |+++.|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE-----------Pt~~LD~~~ 167 (213)
T cd03235 99 KGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE-----------PFAGVDPKT 167 (213)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHH
Confidence 0 0112223444556778999999999 899999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
...+.+++..+. +.+.+||++||+.+.+..
T Consensus 168 ~~~l~~~l~~~~----~~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 168 QEDIYELLRELR----REGMTILVVTHDLGLVLE 197 (213)
T ss_pred HHHHHHHHHHHH----hcCCEEEEEeCCHHHHHH
Confidence 999999998873 246789999999887654
No 225
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.39 E-value=1.5e-12 Score=113.41 Aligned_cols=113 Identities=17% Similarity=0.299 Sum_probs=82.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------------~~ 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 22 s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~ 101 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG 101 (301)
T ss_pred EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHH
Confidence 356789999999999999999999999974 34454444332110 00
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..+.+.+-.|.+|..++|.++++|| |+++.|+..+.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE-----------Pt~gLD~~~~~ 170 (301)
T TIGR03522 102 IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE-----------PTTGLDPNQLV 170 (301)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHH
Confidence 000 1222334555667789999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
.+.+++..+. + +.+||++||+++.+...
T Consensus 171 ~l~~~l~~~~----~-~~tiii~sH~l~~~~~~ 198 (301)
T TIGR03522 171 EIRNVIKNIG----K-DKTIILSTHIMQEVEAI 198 (301)
T ss_pred HHHHHHHHhc----C-CCEEEEEcCCHHHHHHh
Confidence 9999998873 2 47899999999877653
No 226
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.39 E-value=1e-10 Score=95.54 Aligned_cols=197 Identities=19% Similarity=0.281 Sum_probs=132.3
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcc
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 79 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~ 79 (270)
|..+++....+|.|++.|++.|.+-...+.. | .+..++||+|..|||||+|+|++..+. +..+++|+.
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 3455567789999999999999887776544 2 356789999999999999999998754 456888888
Q ss_pred hhHHHhhhchhhHHHHHHHHHHHh-cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHh-hcCCcCCCCeEEEE
Q 024249 80 SELVQKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ-LDGFEASNKIKVLM 157 (270)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~a~~-~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~~~~~~~~vi~ 157 (270)
.++... -.++...+. ...-|||.|++- . ..+....+.+...|+. +. ....+|.+.+
T Consensus 122 ~dl~~L---------p~l~~~Lr~~~~kFIlFcDDLS----------F-e~gd~~yK~LKs~LeG~ve--~rP~NVl~YA 179 (287)
T COG2607 122 EDLATL---------PDLVELLRARPEKFILFCDDLS----------F-EEGDDAYKALKSALEGGVE--GRPANVLFYA 179 (287)
T ss_pred HHHhhH---------HHHHHHHhcCCceEEEEecCCC----------C-CCCchHHHHHHHHhcCCcc--cCCCeEEEEE
Confidence 877542 222333332 345799999952 1 2222334444444442 21 1345788889
Q ss_pred EeCCCCCchhh--------------------hcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCH--H--HHH
Q 024249 158 ATNRIDILDQA--------------------LLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDL--K--KIA 212 (270)
Q Consensus 158 tt~~~~~l~~~--------------------l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~--~--~la 212 (270)
|+|+-..++.. +.-..||+..+.|++++.++...|...+++.+.+.-+ ..+ . ..|
T Consensus 180 TSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WA 259 (287)
T COG2607 180 TSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWA 259 (287)
T ss_pred ecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99886655421 1122389999999999999999999999988766432 112 2 233
Q ss_pred HHcCCCCHHHHHHHHHHH
Q 024249 213 EKMNGASGAELKAVCTEA 230 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a 230 (270)
..-.|-||+--.++++..
T Consensus 260 t~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 260 TTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HhcCCCccHhHHHHHHHH
Confidence 444577887776666543
No 227
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.1e-12 Score=116.16 Aligned_cols=114 Identities=23% Similarity=0.392 Sum_probs=82.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH------------------------------H---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV------------------------------Q--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~------------------------------~--- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. .
T Consensus 25 sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~ 104 (343)
T PRK11153 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVA 104 (343)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHH
Confidence 456789999999999999999999999984 33444444332110 0
Q ss_pred ---hh----------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ---KY----------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ---~~----------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.. +. ..+++.+-.+.+|...+|.++++|| |+++.|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDE-----------Pts~LD~ 173 (343)
T PRK11153 105 LPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDE-----------ATSALDP 173 (343)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCH
Confidence 00 00 1223345556667788999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.....+.+++..+. ...+.+||++||+++.+..
T Consensus 174 ~~~~~l~~~L~~l~---~~~g~tiilvtH~~~~i~~ 206 (343)
T PRK11153 174 ATTRSILELLKDIN---RELGLTIVLITHEMDVVKR 206 (343)
T ss_pred HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 99999999998873 2347899999999887654
No 228
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.38 E-value=1.4e-12 Score=109.24 Aligned_cols=114 Identities=18% Similarity=0.307 Sum_probs=80.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH----------------------------H---H--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------------V---Q-- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~----------------------------~---~-- 84 (270)
+|.+.++..+.|.||||||||||+++|++.. ..+.+.+++.++ . .
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 99 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTG 99 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHH
Confidence 4567899999999999999999999999742 233333332110 0 0
Q ss_pred -hhhc----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 85 -KYIG----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 85 -~~~~----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
...+ ..+++.+-.+.+|....|.++++|| |+++.|...+.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE-----------Pt~~LD~~~~~ 168 (230)
T TIGR03410 100 LAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE-----------PTEGIQPSIIK 168 (230)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC-----------CcccCCHHHHH
Confidence 0000 1112234444556778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. ...+.++|++||+.+.+..
T Consensus 169 ~l~~~l~~~~---~~~~~tii~~sH~~~~~~~ 197 (230)
T TIGR03410 169 DIGRVIRRLR---AEGGMAILLVEQYLDFARE 197 (230)
T ss_pred HHHHHHHHHH---HcCCcEEEEEeCCHHHHHH
Confidence 9999998873 2236889999999887654
No 229
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.38 E-value=2.6e-12 Score=105.38 Aligned_cols=114 Identities=19% Similarity=0.182 Sum_probs=81.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH--------------------------Hh------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------------------------QK------ 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~--------------------------~~------ 85 (270)
+|.+.++..+.|.||||+|||||++.|++.. ..+.+.+++.++. ..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 99 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHA 99 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcc
Confidence 4567899999999999999999999999742 2333333221100 00
Q ss_pred ----------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHH
Q 024249 86 ----------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 141 (270)
Q Consensus 86 ----------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l 141 (270)
.+. ...++.+-.+.+|....|.++++|| |+++.|......+.+++
T Consensus 100 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l 168 (201)
T cd03231 100 DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE-----------PTTALDKAGVARFAEAM 168 (201)
T ss_pred cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCCCCHHHHHHHHHHH
Confidence 000 1223345556667788999999999 89999999999999999
Q ss_pred HhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 142 NQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 142 ~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
..+. +.+.++|++||+...+...
T Consensus 169 ~~~~----~~g~tiii~sH~~~~~~~~ 191 (201)
T cd03231 169 AGHC----ARGGMVVLTTHQDLGLSEA 191 (201)
T ss_pred HHHH----hCCCEEEEEecCchhhhhc
Confidence 8762 2367899999998877653
No 230
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.38 E-value=1.2e-12 Score=108.94 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=78.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH----------------------------H------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------V------ 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------~------ 83 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ .
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 99 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG 99 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHH
Confidence 456789999999999999999999999973 2233333322110 0
Q ss_pred Hhhhc-----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 84 QKYIG-----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 84 ~~~~~-----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
....+ ..+++.+-.+.+|....|.++++|| |+++.|....
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~~LD~~~~ 168 (222)
T cd03224 100 AYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE-----------PSEGLAPKIV 168 (222)
T ss_pred hhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC-----------CcccCCHHHH
Confidence 00000 0111223344456667899999999 8999999999
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+.+++..+. ..+.+||++||+++.+..
T Consensus 169 ~~l~~~l~~~~----~~~~tiii~sH~~~~~~~ 197 (222)
T cd03224 169 EEIFEAIRELR----DEGVTILLVEQNARFALE 197 (222)
T ss_pred HHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 99999998873 246789999999876654
No 231
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.38 E-value=1.9e-12 Score=110.10 Aligned_cols=114 Identities=23% Similarity=0.302 Sum_probs=80.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH----------------------HHh----------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------VQK---------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~----------------------~~~---------- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++..+ ...
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~ 111 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWR 111 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHH
Confidence 4567899999999999999999999999842 233333322110 000
Q ss_pred ------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc
Q 024249 86 ------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD 145 (270)
Q Consensus 86 ------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 145 (270)
.+. ..+++.+-.+.++...+|.++++|| |+++.|......+.+++..+.
T Consensus 112 ~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~L~~~~ 180 (257)
T PRK11247 112 DAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE-----------PLGALDALTRIEMQDLIESLW 180 (257)
T ss_pred HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH
Confidence 000 1223345556667788999999999 899999999999999998762
Q ss_pred CCcCCCCeEEEEEeCCCCCchh
Q 024249 146 GFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 146 ~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
...+.+||++||+++.+..
T Consensus 181 ---~~~~~tviivsHd~~~~~~ 199 (257)
T PRK11247 181 ---QQHGFTVLLVTHDVSEAVA 199 (257)
T ss_pred ---HHcCCEEEEEeCCHHHHHH
Confidence 2346789999999887654
No 232
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.38 E-value=1.1e-12 Score=117.89 Aligned_cols=114 Identities=25% Similarity=0.362 Sum_probs=83.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------------~~ 85 (270)
+|.+.++..+.|.||||+|||||+|+|++. +..+.+.+++.++. ..
T Consensus 23 s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~ 102 (402)
T PRK09536 23 DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGR 102 (402)
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhcc
Confidence 456789999999999999999999999983 23344443331110 00
Q ss_pred h---------------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 86 Y---------------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 86 ~---------------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
+ +. ..+++.+-.+.+|...+|.+++||| |+++.|
T Consensus 103 ~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDE-----------PtsgLD 171 (402)
T PRK09536 103 TPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDE-----------PTASLD 171 (402)
T ss_pred chhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CcccCC
Confidence 0 00 1233445666778889999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
...+..+.++|..+. +.+.+||++||+++.+...
T Consensus 172 ~~~~~~l~~lL~~l~----~~g~TIIivsHdl~~~~~~ 205 (402)
T PRK09536 172 INHQVRTLELVRRLV----DDGKTAVAAIHDLDLAARY 205 (402)
T ss_pred HHHHHHHHHHHHHHH----hcCCEEEEEECCHHHHHHh
Confidence 999999999999884 2367999999998887654
No 233
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.38 E-value=3.1e-12 Score=105.25 Aligned_cols=110 Identities=25% Similarity=0.387 Sum_probs=77.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH-----------H----------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV-----------Q---------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~-----------~---------------------- 84 (270)
+|.+.+|..+.|.||||+|||||++++++.. ..+.+.+++.++. .
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~ 97 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENL 97 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHH
Confidence 4567889999999999999999999999843 2343433322100 0
Q ss_pred ----hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ----KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ----~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
...+ ..+++.+-.+.+|...+|.++++|| |+++.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE-----------Pt~~LD 166 (206)
T TIGR03608 98 DLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE-----------PTGSLD 166 (206)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcCCCC
Confidence 0000 1112234444556778999999999 889999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
......+.+++..+. +.+.++|++||+++.
T Consensus 167 ~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~ 196 (206)
T TIGR03608 167 PKNRDEVLDLLLELN----DEGKTIIIVTHDPEV 196 (206)
T ss_pred HHHHHHHHHHHHHHH----hcCCEEEEEeCCHHH
Confidence 999999999998873 236789999999763
No 234
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.38 E-value=1.1e-12 Score=117.21 Aligned_cols=114 Identities=24% Similarity=0.324 Sum_probs=83.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.++..+.|.||||||||||+++||+. +..+.+.+++.++.
T Consensus 34 sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 113 (375)
T PRK09452 34 DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRM 113 (375)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhh
Confidence 466788999999999999999999999983 33344444332210
Q ss_pred -------------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 84 -------------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 84 -------------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
..++. .+.++.+-.+.+|...+|.++++|| |.++.|...+..
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE-----------P~s~LD~~~r~~ 182 (375)
T PRK09452 114 QKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE-----------SLSALDYKLRKQ 182 (375)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCcCCHHHHHH
Confidence 00000 1234456667778889999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+...|..+. ...++++|++||+.+.+..
T Consensus 183 l~~~L~~l~---~~~g~tiI~vTHd~~ea~~ 210 (375)
T PRK09452 183 MQNELKALQ---RKLGITFVFVTHDQEEALT 210 (375)
T ss_pred HHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 999998873 3347899999999876543
No 235
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.38 E-value=1.4e-12 Score=109.21 Aligned_cols=114 Identities=23% Similarity=0.263 Sum_probs=80.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH----------------------HH---hh-----h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------VQ---KY-----I 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~----------------------~~---~~-----~ 87 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ .. .. .
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence 4567899999999999999999999999742 233333322110 00 00 0
Q ss_pred c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHH
Q 024249 88 G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 137 (270)
Q Consensus 88 ~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l 137 (270)
+ ..+++.+-.+.+|...+|.++++|| |+++.|......+
T Consensus 85 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE-----------Pt~gLD~~~~~~l 153 (230)
T TIGR01184 85 DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDE-----------PFGALDALTRGNL 153 (230)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC-----------CCcCCCHHHHHHH
Confidence 0 1122234445557778999999999 8999999999999
Q ss_pred HHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 138 LELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 138 ~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+++..+. .+.+.+||++||+++.+..
T Consensus 154 ~~~l~~~~---~~~~~tii~~sH~~~~~~~ 180 (230)
T TIGR01184 154 QEELMQIW---EEHRVTVLMVTHDVDEALL 180 (230)
T ss_pred HHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 99998773 2346789999999876544
No 236
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.38 E-value=1e-12 Score=117.44 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=82.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-----------------------------H-H-h-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL-----------------------------V-Q-K- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~-----------------------------~-~-~- 85 (270)
+|.+.++..+.|.||||||||||+++|++. +..+.+.+++.++ . . .
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~ 102 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKL 102 (369)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhh
Confidence 456788999999999999999999999984 3334444332111 0 0 0
Q ss_pred ---------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 86 ---------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 86 ---------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
.+. ...++.+-.+.+|....|.++++|| |+++.|...+..
T Consensus 103 ~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE-----------Pts~LD~~~~~~ 171 (369)
T PRK11000 103 AGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE-----------PLSNLDAALRVQ 171 (369)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHH
Confidence 000 1233445666778888999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+++..+. .+.+.++|++||+.+.+..
T Consensus 172 l~~~L~~l~---~~~g~tvI~vTHd~~~~~~ 199 (369)
T PRK11000 172 MRIEISRLH---KRLGRTMIYVTHDQVEAMT 199 (369)
T ss_pred HHHHHHHHH---HHhCCEEEEEeCCHHHHHH
Confidence 999888773 2346889999999876644
No 237
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.37 E-value=3.7e-12 Score=98.98 Aligned_cols=111 Identities=24% Similarity=0.403 Sum_probs=86.0
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhH------------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSEL------------------------------------ 82 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~------------------------------------ 82 (270)
+.+.++..+.|+||+|+|||||+-.+|+ .+..+.+++.+..+
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~ 110 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA 110 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhcc
Confidence 4578899999999999999999999997 34444444443332
Q ss_pred -----------------------------HHhhhch--hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 83 -----------------------------VQKYIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 83 -----------------------------~~~~~~~--~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
..+|+++ +.++.+..+++|....|.|+|.|| |+++.|.
T Consensus 111 lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADE-----------PTGNLD~ 179 (228)
T COG4181 111 LPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADE-----------PTGNLDR 179 (228)
T ss_pred chhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccC-----------CCCCcch
Confidence 1123332 456778889999999999999999 9999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
..-..+..++-.++ ...+.++|+.||++...
T Consensus 180 ~Tg~~iaDLlF~ln---re~G~TlVlVTHD~~LA 210 (228)
T COG4181 180 ATGDKIADLLFALN---RERGTTLVLVTHDPQLA 210 (228)
T ss_pred hHHHHHHHHHHHHh---hhcCceEEEEeCCHHHH
Confidence 99988888887774 45689999999986543
No 238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.37 E-value=2.6e-12 Score=102.90 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=79.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-------------eEEEEcchhHHHh----------hhc--hhhHHH
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------------TFIRVSGSELVQK----------YIG--EGSRMV 94 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~-------------~~i~i~~~~~~~~----------~~~--~~~~~~ 94 (270)
+|.+.++..+.|.||||+|||||++++....+. .+.++...++... ... ...++.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 456889999999999999999999999742111 1111111111110 111 123456
Q ss_pred HHHHHHHHhcC--CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 95 RELFVMAREHA--PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 95 ~~~~~~a~~~~--p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+-.+.+|...+ |.++++|| |+++.|......+.+.+..+. +.+.+||++||+.+.+
T Consensus 95 rl~laral~~~~~p~llLlDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tvIivSH~~~~~ 152 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDE-----------PSTGLHQQDINQLLEVIKGLI----DLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHH
Confidence 77788888889 99999999 889999999999999998772 2478899999997654
No 239
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.37 E-value=2e-12 Score=107.78 Aligned_cols=113 Identities=20% Similarity=0.279 Sum_probs=80.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH-----------------------HH------hhhc
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-----------------------VQ------KYIG 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~-----------------------~~------~~~~ 88 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++..+ .. ...+
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~ 99 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLG 99 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcC
Confidence 4567899999999999999999999999842 233332222110 00 0000
Q ss_pred --------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHH
Q 024249 89 --------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 142 (270)
Q Consensus 89 --------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~ 142 (270)
..++..+-.+.+|....|.++++|| |+++.|...+..+.+++.
T Consensus 100 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE-----------P~~~LD~~~~~~l~~~L~ 168 (223)
T TIGR03740 100 LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE-----------PTNGLDPIGIQELRELIR 168 (223)
T ss_pred CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC-----------CccCCCHHHHHHHHHHHH
Confidence 1122334555667778999999999 899999999999999998
Q ss_pred hhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 143 QLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 143 ~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+. ..+.+||++||+++.+..
T Consensus 169 ~~~----~~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 169 SFP----EQGITVILSSHILSEVQQ 189 (223)
T ss_pred HHH----HCCCEEEEEcCCHHHHHH
Confidence 873 236789999999887654
No 240
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=1.7e-12 Score=107.36 Aligned_cols=114 Identities=24% Similarity=0.335 Sum_probs=80.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH-------------------------HHh-----hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-------------------------VQK-----YI 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~-------------------------~~~-----~~ 87 (270)
+|.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++.++ ... ..
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 97 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSP 97 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccc
Confidence 5678899999999999999999999999742 233333322110 000 00
Q ss_pred --c-----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 88 --G-----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 88 --~-----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
. ...++.+-.+.+|...+|.++++|| |+++.|......
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE-----------P~~~LD~~~~~~ 166 (211)
T cd03298 98 GLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE-----------PFAALDPALRAE 166 (211)
T ss_pred ccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHHH
Confidence 0 1112234444556778999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+++..+. .+.+.+||++||+++.+..
T Consensus 167 l~~~l~~~~---~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 167 MLDLVLDLH---AETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred HHHHHHHHH---HhcCCEEEEEecCHHHHHh
Confidence 999998873 2346889999999887754
No 241
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.37 E-value=1.3e-12 Score=116.27 Aligned_cols=114 Identities=25% Similarity=0.298 Sum_probs=85.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCC--eEEEEcchhHHH-------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDC--TFIRVSGSELVQ------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~--~~i~i~~~~~~~------------------------------- 84 (270)
+|.+.++..+.|.||||||||||+++||+. +.. +.+.+++.++..
T Consensus 25 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l 104 (362)
T TIGR03258 25 SLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGL 104 (362)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHH
Confidence 356788999999999999999999999983 445 666655432100
Q ss_pred h----------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 85 K----------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 85 ~----------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
. .+. ...++.+-.+.+|...+|.++++|| |.++.|...+
T Consensus 105 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE-----------P~s~LD~~~r 173 (362)
T TIGR03258 105 RAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE-----------PLSALDANIR 173 (362)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------ccccCCHHHH
Confidence 0 000 1233456666778889999999999 8999999999
Q ss_pred HHHHHHHHhhcCCcCCC-CeEEEEEeCCCCCchh
Q 024249 135 RTMLELLNQLDGFEASN-KIKVLMATNRIDILDQ 167 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~-~~~vi~tt~~~~~l~~ 167 (270)
..+...+..+. .+. +.++|++||+.+.+..
T Consensus 174 ~~l~~~l~~l~---~~~~g~til~vTHd~~ea~~ 204 (362)
T TIGR03258 174 ANMREEIAALH---EELPELTILCVTHDQDDALT 204 (362)
T ss_pred HHHHHHHHHHH---HhCCCCEEEEEeCCHHHHHH
Confidence 99999998873 233 6899999999887643
No 242
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.37 E-value=2.5e-12 Score=108.15 Aligned_cols=114 Identities=23% Similarity=0.312 Sum_probs=79.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchh---------------------H---------H---H
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSE---------------------L---------V---Q 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~---------------------~---------~---~ 84 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.. + . .
T Consensus 41 s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~ 120 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA 120 (236)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHH
Confidence 356789999999999999999999999973 222222221110 0 0 0
Q ss_pred hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 85 KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 85 ~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
...+ ..+++.+-.+.+|....|.++++|| |+++.|....
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE-----------Pt~~LD~~~~ 189 (236)
T cd03267 121 AIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE-----------PTIGLDVVAQ 189 (236)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CCCCCCHHHH
Confidence 0000 1122234445557778999999999 8999999999
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+.+++..+. .+.+.+||++||+++.+..
T Consensus 190 ~~l~~~l~~~~---~~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 190 ENIRNFLKEYN---RERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred HHHHHHHHHHH---hcCCCEEEEEecCHHHHHH
Confidence 99999998873 2346789999999886654
No 243
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.37 E-value=9.2e-11 Score=106.23 Aligned_cols=213 Identities=16% Similarity=0.147 Sum_probs=121.8
Q ss_pred cccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC--eEEEEcc-----hhHHHh
Q 024249 13 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSG-----SELVQK 85 (270)
Q Consensus 13 ~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~--~~i~i~~-----~~~~~~ 85 (270)
.+.|.++.++.+...+. .+.+++|.||||||||++|++++...+. ++..+.+ .++.+.
T Consensus 21 ~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 35555555555554443 4688999999999999999999986532 3333222 222221
Q ss_pred h-hchhhHHHHHHHHHHHhc---CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc----CCc-CCCCeEEE
Q 024249 86 Y-IGEGSRMVRELFVMAREH---APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD----GFE-ASNKIKVL 156 (270)
Q Consensus 86 ~-~~~~~~~~~~~~~~a~~~---~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~----~~~-~~~~~~vi 156 (270)
. +.... -...|...... ...++|+||+.. ..+..+..+.+.+++-. +.. .-+..+++
T Consensus 86 l~i~~~~--~~g~f~r~~~G~L~~A~lLfLDEI~r------------asp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 86 LSIQALK--DEGRYQRLTSGYLPEAEIVFLDEIWK------------AGPAILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHHhhhh--hcCchhhhcCCccccccEEeeccccc------------CCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 1 00000 01112111111 234999999854 34566777777775421 100 11123455
Q ss_pred EEeCCCCC---chhhhcCCCCcceEEEeCCCC-HHHHHHHHHHhhcc----CCCCCCCCH--------------------
Q 024249 157 MATNRIDI---LDQALLRPGRIDRKIEFPNPN-EESRLDILKIHSRR----MNLMRGIDL-------------------- 208 (270)
Q Consensus 157 ~tt~~~~~---l~~~l~r~~r~~~~i~~~~p~-~~~r~~il~~~~~~----~~~~~~~~~-------------------- 208 (270)
++||.... ..+++.. ||-..+.+|+|+ .++-.+|+...... ......++.
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 66664332 1136666 887789999997 45557787653210 100011111
Q ss_pred ---HHHHHH---cC---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 024249 209 ---KKIAEK---MN---GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 209 ---~~la~~---~~---g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 257 (270)
..|... +. ..|++--..+++.|...|.-.++..++++|+. .+..+++.
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 123321 21 26888888888888888999999999999999 77776663
No 244
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.37 E-value=4.9e-12 Score=103.53 Aligned_cols=112 Identities=22% Similarity=0.201 Sum_probs=77.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH--------------------------H------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL--------------------------V------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~--------------------------~------~~ 85 (270)
+|.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++.++ . ..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAA 99 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHH
Confidence 4568899999999999999999999999842 233333322110 0 00
Q ss_pred hhc--------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH
Q 024249 86 YIG--------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 139 (270)
Q Consensus 86 ~~~--------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~ 139 (270)
..+ ..+++.+-.+.+|....|.++++|| |+++.|......+.+
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~ 168 (198)
T TIGR01189 100 IHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE-----------PTTALDKAGVALLAG 168 (198)
T ss_pred HcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCcCCCHHHHHHHHH
Confidence 000 1122234445556778999999999 889999999999999
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 140 LLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
++..+. +.+.++|++||++..+.
T Consensus 169 ~l~~~~----~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 169 LLRAHL----ARGGIVLLTTHQDLGLV 191 (198)
T ss_pred HHHHHH----hCCCEEEEEEccccccc
Confidence 998762 23568999999876553
No 245
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.37 E-value=2.2e-11 Score=115.83 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=134.0
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------------------
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT------------------- 70 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~------------------- 70 (270)
.|..|+|.+..+..+.-....+ ...+|||.|++|||||+++++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5889999999988877666654 22569999999999999999999765
Q ss_pred ----------------CCeEEEEcchhHHHhhhchhhHHHHHHHHHH---------HhcCCeEEEEcCCCcccCcccCCC
Q 024249 71 ----------------DCTFIRVSGSELVQKYIGEGSRMVRELFVMA---------REHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 71 ----------------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a---------~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
..+++.+.+.......+|.. .+...+... ......+|||||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL--DIERALREGEKAFQPGLLAEAHRGILYIDEVNLL-------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc--cHHHHhhcCCeeecCcceeecCCCeEEeChhhhC--------
Confidence 23444443332222222211 011111100 0112349999998875
Q ss_pred CCCCChHHHHHHHHHHHhhc------CC--cCCCCeEEEEEeCCC-CCchhhhcCCCCcceEEEeCCCC-HHHHHHHHHH
Q 024249 126 SGNGDSEVQRTMLELLNQLD------GF--EASNKIKVLMATNRI-DILDQALLRPGRIDRKIEFPNPN-EESRLDILKI 195 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~------~~--~~~~~~~vi~tt~~~-~~l~~~l~r~~r~~~~i~~~~p~-~~~r~~il~~ 195 (270)
+...+..|.+.++.-. +. ....++.+|+|+|-. ..+.+.+.. ||+..+.++.+. .+++.++++.
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 3456667777775321 10 112346777777743 357777877 898888887664 5777777764
Q ss_pred hhccC-------------------------CCCCCCC-----HHHHHHHc--CCC-CHHHHHHHHHHHHHHHHHhcCCCC
Q 024249 196 HSRRM-------------------------NLMRGID-----LKKIAEKM--NGA-SGAELKAVCTEAGMFALRERRIHV 242 (270)
Q Consensus 196 ~~~~~-------------------------~~~~~~~-----~~~la~~~--~g~-~~~dl~~l~~~a~~~a~~~~~~~i 242 (270)
..... .....+. +..++..+ -|. +.+-...+++.|.-.|.-.++..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V 292 (633)
T TIGR02442 213 RLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRV 292 (633)
T ss_pred HHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcC
Confidence 22100 0001111 22233322 244 345555777878778888899999
Q ss_pred CHHHHHHHHHHHhhhh
Q 024249 243 TQEDFEMAVAKVMKKE 258 (270)
Q Consensus 243 ~~~d~~~a~~~~~~~~ 258 (270)
+.+|+..|+.-+++..
T Consensus 293 ~~~Dv~~A~~lvL~hR 308 (633)
T TIGR02442 293 TAEDVREAAELVLPHR 308 (633)
T ss_pred CHHHHHHHHHHHhhhh
Confidence 9999999999998643
No 246
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=2e-12 Score=110.87 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=80.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH-------------------------------H--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV-------------------------------Q-- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~-------------------------------~-- 84 (270)
+|.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++.++. .
T Consensus 44 s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 123 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENV 123 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHH
Confidence 3567899999999999999999999999842 3343333221100 0
Q ss_pred ----hh----------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ----KY----------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ----~~----------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.. +. ..+++.+-.+.+|....|.+|++|| |+++.|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDE-----------Pt~~LD 192 (269)
T cd03294 124 AFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE-----------AFSALD 192 (269)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CCccCC
Confidence 00 00 1122334445567778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
......+.+++..+. ...+.+||++||+++.+..
T Consensus 193 ~~~~~~l~~~l~~~~---~~~g~tiii~tH~~~~~~~ 226 (269)
T cd03294 193 PLIRREMQDELLRLQ---AELQKTIVFITHDLDEALR 226 (269)
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 999999999998873 2336789999999876643
No 247
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=2.9e-12 Score=105.90 Aligned_cols=111 Identities=28% Similarity=0.406 Sum_probs=78.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-----------------------------H--hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV-----------------------------Q--KY 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~-----------------------------~--~~ 86 (270)
+|.+.++ .+.|.||||+|||||+++|++. +..+.+.+++.++. . ..
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 98 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAW 98 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHH
Confidence 3557777 8999999999999999999973 23343433331110 0 00
Q ss_pred h-c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 87 I-G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 87 ~-~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
. + ..+++.+-.+.+|....|.++++|| |+++.|...+.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE-----------Pt~~LD~~~~~ 167 (211)
T cd03264 99 LKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE-----------PTAGLDPEERI 167 (211)
T ss_pred HhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHH
Confidence 0 0 1122334455567778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. + +.+||++||+++.+..
T Consensus 168 ~l~~~l~~~~----~-~~tii~vsH~~~~~~~ 194 (211)
T cd03264 168 RFRNLLSELG----E-DRIVILSTHIVEDVES 194 (211)
T ss_pred HHHHHHHHHh----C-CCEEEEEcCCHHHHHH
Confidence 9999998873 2 3789999999887654
No 248
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.36 E-value=2.3e-12 Score=108.65 Aligned_cols=113 Identities=23% Similarity=0.428 Sum_probs=79.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 100 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMF 100 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHh
Confidence 4567899999999999999999999999842 3344443321110
Q ss_pred Hhh-h-c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 84 QKY-I-G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 84 ~~~-~-~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
... . + ..+++.+-.+.+|....|.++++|| |+++.|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE-----------P~~~LD~ 169 (240)
T PRK09493 101 GPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE-----------PTSALDP 169 (240)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCH
Confidence 000 0 0 1112223444556678899999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.....+.+++..+. +.+.++|++||+.+.+..
T Consensus 170 ~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~~ 201 (240)
T PRK09493 170 ELRHEVLKVMQDLA----EEGMTMVIVTHEIGFAEK 201 (240)
T ss_pred HHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHH
Confidence 99999999998873 236789999999887654
No 249
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=1.4e-12 Score=116.66 Aligned_cols=114 Identities=21% Similarity=0.258 Sum_probs=83.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH------------------------------H---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV------------------------------Q--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~------------------------------~--- 84 (270)
+|.+.++..+.|.||||||||||+++||+. +..+.+.+++.++. .
T Consensus 39 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 118 (377)
T PRK11607 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQ 118 (377)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 466789999999999999999999999973 33444444432210 0
Q ss_pred --------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 85 --------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 85 --------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
.++. ...++.+-.+.+|...+|.+|++|| |.++.|...+..
T Consensus 119 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE-----------P~s~LD~~~r~~ 187 (377)
T PRK11607 119 DKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE-----------PMGALDKKLRDR 187 (377)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHH
Confidence 0000 2334456677778889999999999 899999999988
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+.+..+. ...+.++|++||+.+.+..
T Consensus 188 l~~~l~~l~---~~~g~tii~vTHd~~ea~~ 215 (377)
T PRK11607 188 MQLEVVDIL---ERVGVTCVMVTHDQEEAMT 215 (377)
T ss_pred HHHHHHHHH---HhcCCEEEEEcCCHHHHHH
Confidence 888777663 2346899999999886543
No 250
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.36 E-value=2.7e-12 Score=105.11 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=86.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHHHhhh---c--------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQKYI---G-------------------------- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~~~~~---~-------------------------- 88 (270)
+|.+++++.+.|.||||+||||+.|.|.+ ++..+.+.+++.++..... |
T Consensus 22 sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG 101 (300)
T COG4152 22 SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG 101 (300)
T ss_pred eeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcC
Confidence 45678999999999999999999999998 4556788887755422100 0
Q ss_pred ----------------------------h--hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHH
Q 024249 89 ----------------------------E--GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML 138 (270)
Q Consensus 89 ----------------------------~--~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~ 138 (270)
+ ...+.+--|-.+..|.|.+|+||| |.+++|+...+.+.
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDE-----------PFSGLDPVN~elLk 170 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE-----------PFSGLDPVNVELLK 170 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecC-----------CccCCChhhHHHHH
Confidence 0 111222233346679999999999 89999999999999
Q ss_pred HHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 139 ELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 139 ~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+.+.++ ...+.+||++||.++.+...
T Consensus 171 ~~I~~l----k~~GatIifSsH~Me~vEeL 196 (300)
T COG4152 171 DAIFEL----KEEGATIIFSSHRMEHVEEL 196 (300)
T ss_pred HHHHHH----HhcCCEEEEecchHHHHHHH
Confidence 998887 45789999999999877653
No 251
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.8e-12 Score=102.77 Aligned_cols=111 Identities=32% Similarity=0.385 Sum_probs=81.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
++++.++..+.+.||+|||||||++.+|+- +..+.+.+++..+.
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi 104 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGI 104 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCC
Confidence 456889999999999999999999999983 33344444332110
Q ss_pred ----------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH
Q 024249 84 ----------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 139 (270)
Q Consensus 84 ----------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~ 139 (270)
.+++- .+..+.+.-+++|.+..|..+++|| |.+..|.-.++.+.+
T Consensus 105 ~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE-----------PfgAlDa~tRe~mQe 173 (259)
T COG4525 105 EKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE-----------PFGALDALTREQMQE 173 (259)
T ss_pred CHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecC-----------chhhHHHHHHHHHHH
Confidence 00000 2334556667788899999999999 888899888999999
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 140 LLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
++-.+. ...+.-++++||++++
T Consensus 174 lLldlw---~~tgk~~lliTH~ieE 195 (259)
T COG4525 174 LLLDLW---QETGKQVLLITHDIEE 195 (259)
T ss_pred HHHHHH---HHhCCeEEEEeccHHH
Confidence 888874 4557779999999764
No 252
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.1e-12 Score=111.01 Aligned_cols=112 Identities=25% Similarity=0.361 Sum_probs=80.9
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------Hh-hh--
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV----------------------------QK-YI-- 87 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~----------------------------~~-~~-- 87 (270)
|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. .. ..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~ 105 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGP 105 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhH
Confidence 56789999999999999999999999974 23444444331110 00 00
Q ss_pred ---c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 88 ---G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 88 ---~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
+ ..+++.+-.+.+|...+|.++++|| |+++.|+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE-----------Pt~~LD~~~~ 174 (274)
T PRK13647 106 VNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE-----------PMAYLDPRGQ 174 (274)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CCcCCCHHHH
Confidence 0 1122334455567778999999999 8999999999
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+.+++..+. ..+.+||++||+++.+..
T Consensus 175 ~~l~~~l~~~~----~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 175 ETLMEILDRLH----NQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 99999998873 236899999999887654
No 253
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.2e-12 Score=111.02 Aligned_cols=115 Identities=18% Similarity=0.362 Sum_probs=81.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-----------------------H--------H--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL-----------------------V--------Q-- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~-----------------------~--------~-- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ . .
T Consensus 24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~ 103 (277)
T PRK13652 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG 103 (277)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhH
Confidence 356789999999999999999999999974 2333333322110 0 0
Q ss_pred -hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 85 -KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 85 -~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
...+ ..+++.+..+.+|...+|.++++|| |+++.|...
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE-----------Pt~gLD~~~ 172 (277)
T PRK13652 104 PINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE-----------PTAGLDPQG 172 (277)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHH
Confidence 0000 1222335555667788999999999 899999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
...+.+++..+. ...+.+||++||+++.+...
T Consensus 173 ~~~l~~~l~~l~---~~~g~tvli~tH~~~~~~~~ 204 (277)
T PRK13652 173 VKELIDFLNDLP---ETYGMTVIFSTHQLDLVPEM 204 (277)
T ss_pred HHHHHHHHHHHH---HhcCCEEEEEecCHHHHHHh
Confidence 999999998873 23368999999998877553
No 254
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.36 E-value=3.3e-12 Score=108.34 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|....|.++++|| |+++.|......+.+++..+. +.+.+||++||+.+.+..
T Consensus 152 rv~la~al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tvi~~tH~~~~~~~ 209 (250)
T PRK11264 152 RVAIARALAMRPEVILFDE-----------PTSALDPELVGEVLNTIRQLA----QEKRTMVIVTHEMSFARD 209 (250)
T ss_pred HHHHHHHHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHH
Confidence 3444556778999999999 899999999999999998873 236789999999877654
No 255
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.36 E-value=3.6e-12 Score=121.52 Aligned_cols=111 Identities=23% Similarity=0.346 Sum_probs=88.4
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHHHh---------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQK--------------------------------- 85 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~~~--------------------------------- 85 (270)
+.+++|+.+.|+|++|||||||+|.+.+ .+..+.+.+++.++..-
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE 573 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC
Confidence 4578888899999999999999999998 45567777776554110
Q ss_pred ----------------------------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 86 ----------------------------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 86 ----------------------------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.++ .++++.+-++++|.-.+|.||++|| ++++.|+
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDE-----------aTSaLD~ 642 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDE-----------ATSALDP 642 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeC-----------cccccCH
Confidence 000 3566778888889999999999999 7889999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
...+.+.+.|..+. .+.++|++||++..+..
T Consensus 643 ~sE~~I~~~L~~~~-----~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 643 ETEAIILQNLLQIL-----QGRTVIIIAHRLSTIRS 673 (709)
T ss_pred hHHHHHHHHHHHHh-----cCCeEEEEEccchHhhh
Confidence 99999998888873 35889999999877653
No 256
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2e-12 Score=108.74 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=78.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH----------------------------HH-----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------------VQ----- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~----------------------------~~----- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ ..
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 104 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG 104 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHh
Confidence 4568899999999999999999999999732 233333322110 00
Q ss_pred -hhhc-----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 85 -KYIG-----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 85 -~~~~-----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
.... ..+++.+-.+.+|...+|.++++|| |+++.|....
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE-----------Pt~~LD~~~~ 173 (237)
T PRK11614 105 GFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE-----------PSLGLAPIII 173 (237)
T ss_pred hhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC-----------ccccCCHHHH
Confidence 0000 0112223344456667899999999 8999999999
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+.+++..+. +.+.+||++||+++.+..
T Consensus 174 ~~l~~~l~~~~----~~~~tiii~sH~~~~~~~ 202 (237)
T PRK11614 174 QQIFDTIEQLR----EQGMTIFLVEQNANQALK 202 (237)
T ss_pred HHHHHHHHHHH----HCCCEEEEEeCcHHHHHh
Confidence 99999998873 236789999999876654
No 257
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=3.3e-12 Score=107.77 Aligned_cols=113 Identities=21% Similarity=0.240 Sum_probs=79.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH----------------------------HHh----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------VQK---- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------~~~---- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ ...
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 102 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV 102 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhh
Confidence 456789999999999999999999999984 2334343332110 000
Q ss_pred --hhc-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 86 --YIG-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 86 --~~~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
..+ ..+++.+-.+.+|....|.++++|| |+++.|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~~LD~~ 171 (241)
T PRK10895 103 LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE-----------PFAGVDPI 171 (241)
T ss_pred hhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHH
Confidence 000 1112234445556778999999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+..+.+++..+. +.+.+||++||+++.+..
T Consensus 172 ~~~~l~~~l~~~~----~~g~tiii~sH~~~~~~~ 202 (241)
T PRK10895 172 SVIDIKRIIEHLR----DSGLGVLITDHNVRETLA 202 (241)
T ss_pred HHHHHHHHHHHHH----hcCCEEEEEEcCHHHHHH
Confidence 9999999888773 346789999999876654
No 258
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=3.2e-12 Score=107.84 Aligned_cols=114 Identities=18% Similarity=0.295 Sum_probs=80.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH--------------------------h------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------K------ 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------~------ 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++.. .
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 102 (241)
T PRK14250 23 SVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPM 102 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchh
Confidence 456789999999999999999999999984 334444433321100 0
Q ss_pred -------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHH
Q 024249 86 -------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML 138 (270)
Q Consensus 86 -------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~ 138 (270)
.+. ..+++.+-.+.+|....|.++++|| |+++.|......+.
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~ 171 (241)
T PRK14250 103 LKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE-----------PTSALDPTSTEIIE 171 (241)
T ss_pred hcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHH
Confidence 000 1122334555567778999999999 88999999999999
Q ss_pred HHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 139 ELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 139 ~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++..+. ...+.+||++||+.+.+..
T Consensus 172 ~~l~~~~---~~~g~tii~~sH~~~~~~~ 197 (241)
T PRK14250 172 ELIVKLK---NKMNLTVIWITHNMEQAKR 197 (241)
T ss_pred HHHHHHH---HhCCCEEEEEeccHHHHHH
Confidence 9998873 2236789999999887654
No 259
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=2.3e-12 Score=110.59 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=79.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH------------------------------HH---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL------------------------------VQ--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~------------------------------~~--- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ ..
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 100 (271)
T PRK13638 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIA 100 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHH
Confidence 3567889999999999999999999999732 233333322110 00
Q ss_pred ---hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ---KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ---~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
...+ ..+++.+-.+.+|....|.++++|| |+++.|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE-----------Pt~~LD~ 169 (271)
T PRK13638 101 FSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE-----------PTAGLDP 169 (271)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCH
Confidence 0000 1112234445556778999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. ..+.+||++||+++.+..
T Consensus 170 ~~~~~l~~~l~~~~----~~g~tii~vtH~~~~~~~ 201 (271)
T PRK13638 170 AGRTQMIAIIRRIV----AQGNHVIISSHDIDLIYE 201 (271)
T ss_pred HHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 99999999998873 236789999999887654
No 260
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.35 E-value=6.1e-11 Score=111.96 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=67.4
Q ss_pred CeEEEEEeCCC--CCchhhhcCCCCcc---eEEEeC---CCCHHHHHHHHHHhhcc---CCCCCCCCHHHHHHHc-----
Q 024249 152 KIKVLMATNRI--DILDQALLRPGRID---RKIEFP---NPNEESRLDILKIHSRR---MNLMRGIDLKKIAEKM----- 215 (270)
Q Consensus 152 ~~~vi~tt~~~--~~l~~~l~r~~r~~---~~i~~~---~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~----- 215 (270)
.+.+|++++.. ..+++.+.+ ||+ ..++++ +++.+.|.++.+.+.+. ......++-+.+++..
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 46678887753 467888877 777 556554 33566776666554332 2122344443333222
Q ss_pred -C------CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 216 -N------GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 216 -~------g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
. ..+.++|..+++.|...|..++...|+.+|+++|++....
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 1 1346999999999987777777889999999999887654
No 261
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=2.5e-12 Score=107.41 Aligned_cols=114 Identities=25% Similarity=0.342 Sum_probs=91.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHH-------------------------Hhhhch--h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELV-------------------------QKYIGE--G 90 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~-------------------------~~~~~~--~ 90 (270)
+|.+..++.+.|+|.|||||||++|.+.+ ++..+.+.+.+.++. .+|+.+ +
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 56789999999999999999999999998 445677777765431 122222 4
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 91 SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 91 ~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.++.+-.+++|...+|.+++.|| |.+..|...+.++..++..+. ...+.+.+++||+...+..
T Consensus 113 GQrQRi~IARALal~P~liV~DE-----------pvSaLDvSiqaqIlnLL~dlq---~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADE-----------PVSALDVSVQAQILNLLKDLQ---EELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecC-----------chhhcchhHHHHHHHHHHHHH---HHhCCeEEEEEEEHHhhhh
Confidence 56677888889999999999999 788899999999999998884 4568999999999876543
No 262
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.35 E-value=5.1e-12 Score=106.69 Aligned_cols=59 Identities=19% Similarity=0.420 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|....|.++++|| |+++.|......+.+++..+. .+.+.+||++||+.+.+..
T Consensus 153 rv~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tiii~tH~~~~~~~ 211 (243)
T TIGR02315 153 RVAIARALAQQPDLILADE-----------PIASLDPKTSKQVMDYLKRIN---KEDGITVIINLHQVDLAKK 211 (243)
T ss_pred HHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 3444556678899999999 899999999999999998872 2336789999999887654
No 263
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=4.4e-12 Score=107.07 Aligned_cols=113 Identities=21% Similarity=0.434 Sum_probs=79.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH---------------------------------HH
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL---------------------------------VQ 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~---------------------------------~~ 84 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++ ..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 101 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQ 101 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHH
Confidence 3567899999999999999999999999842 334343332211 00
Q ss_pred hh-------hc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCC
Q 024249 85 KY-------IG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG 127 (270)
Q Consensus 85 ~~-------~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~ 127 (270)
.. .+ ..+++.+-.+.+|....|.++++|| |++
T Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE-----------Pt~ 170 (242)
T PRK11124 102 NLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE-----------PTA 170 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CCC
Confidence 00 00 1112233444556678899999999 889
Q ss_pred CCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 128 NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 128 ~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.|......+.+++..+. +.+.++|++||+++.+..
T Consensus 171 ~LD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~~~~ 206 (242)
T PRK11124 171 ALDPEITAQIVSIIRELA----ETGITQVIVTHEVEVARK 206 (242)
T ss_pred cCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHH
Confidence 999999999999998873 246789999999887654
No 264
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=3e-12 Score=107.41 Aligned_cols=114 Identities=21% Similarity=0.364 Sum_probs=79.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH-------------------------HHh-----hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-------------------------VQK-----YI 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~-------------------------~~~-----~~ 87 (270)
+|.+.+|..+.|.||||+|||||++.|++.. ..+.+.+++.++ ... ..
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 98 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNP 98 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccc
Confidence 5678899999999999999999999999742 223332222110 000 00
Q ss_pred c-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 88 G-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 88 ~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
+ ...++.+-.+.+|....|.++++|| |+++.|...+..
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE-----------P~~gLD~~~~~~ 167 (232)
T PRK10771 99 GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE-----------PFSALDPALRQE 167 (232)
T ss_pred ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHH
Confidence 0 0112234444556778999999999 889999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+++..+. .+.+.+||++||+++.+..
T Consensus 168 ~~~~l~~~~---~~~~~tiii~sH~~~~~~~ 195 (232)
T PRK10771 168 MLTLVSQVC---QERQLTLLMVSHSLEDAAR 195 (232)
T ss_pred HHHHHHHHH---HhcCCEEEEEECCHHHHHH
Confidence 999998762 2336789999999887754
No 265
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.35 E-value=3e-12 Score=109.80 Aligned_cols=114 Identities=21% Similarity=0.317 Sum_probs=80.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH------------------------------HH---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL------------------------------VQ--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~------------------------------~~--- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ ..
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 106 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVA 106 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHH
Confidence 4668899999999999999999999999742 233333332110 00
Q ss_pred ---hhhc-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ---KYIG-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ---~~~~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.... ..+++.+-.+.+|....|.++++|| |+++.|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE-----------Pt~~LD 175 (269)
T PRK11831 107 YPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE-----------PFVGQD 175 (269)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CCccCC
Confidence 0000 0112234445556778899999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
...+..+.+++..+. ...+.+||++||+.+.+..
T Consensus 176 ~~~~~~l~~~l~~~~---~~~g~tiiivsH~~~~~~~ 209 (269)
T PRK11831 176 PITMGVLVKLISELN---SALGVTCVVVSHDVPEVLS 209 (269)
T ss_pred HHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHHHH
Confidence 999999999998873 2336889999999876654
No 266
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.35 E-value=1.5e-11 Score=93.74 Aligned_cols=123 Identities=33% Similarity=0.511 Sum_probs=78.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCe---EEEEcchhHHHh--------------hhchhhHHHHHHHHHHHhcCCeE
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCT---FIRVSGSELVQK--------------YIGEGSRMVRELFVMAREHAPSI 108 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~---~i~i~~~~~~~~--------------~~~~~~~~~~~~~~~a~~~~p~i 108 (270)
+..++|+|||||||||+++.++...... ++++++...... ............+..+....|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5679999999999999999999987664 777777653321 11233445677888888888899
Q ss_pred EEEcCCCcccCcccCCCCCCCChHHHHHHHH-----HHHhhcCCcCCCCeEEEEEeCC-CCCchhhhcCCCCcceEEEeC
Q 024249 109 IFMDEIDSIGSARMESGSGNGDSEVQRTMLE-----LLNQLDGFEASNKIKVLMATNR-IDILDQALLRPGRIDRKIEFP 182 (270)
Q Consensus 109 l~lDeid~l~~~~~~~~~~~~~~~~~~~l~~-----~l~~l~~~~~~~~~~vi~tt~~-~~~l~~~l~r~~r~~~~i~~~ 182 (270)
|++||++.+.... ....... ..... .......+|+++|. ....+..+.+ +++..+.++
T Consensus 82 iiiDei~~~~~~~-----------~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~ 145 (148)
T smart00382 82 LILDEITSLLDAE-----------QEALLLLLEELRLLLLL---KSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLL 145 (148)
T ss_pred EEEECCcccCCHH-----------HHHHHHhhhhhHHHHHH---HhcCCCEEEEEeCCCccCchhhhhh--ccceEEEec
Confidence 9999988764321 1111110 00111 12346778888886 2333334444 777777765
Q ss_pred CC
Q 024249 183 NP 184 (270)
Q Consensus 183 ~p 184 (270)
.+
T Consensus 146 ~~ 147 (148)
T smart00382 146 LI 147 (148)
T ss_pred CC
Confidence 44
No 267
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=2.7e-12 Score=110.60 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=80.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------H-----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV----------------------------Q----- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~----------------------------~----- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. .
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~ 106 (279)
T PRK13650 27 SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG 106 (279)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhh
Confidence 456789999999999999999999999984 33344433332110 0
Q ss_pred -hh----------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 85 -KY----------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 85 -~~----------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
.. +. ..+++.+-.+.+|...+|.++++|| |+++.|...
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE-----------Pt~~LD~~~ 175 (279)
T PRK13650 107 LENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE-----------ATSMLDPEG 175 (279)
T ss_pred HHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CcccCCHHH
Confidence 00 00 1223345555667788999999999 899999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
...+.+++..+. ...+.+||++||+.+.+
T Consensus 176 ~~~l~~~l~~l~---~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 176 RLELIKTIKGIR---DDYQMTVISITHDLDEV 204 (279)
T ss_pred HHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 999999998873 23478999999998766
No 268
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=2.6e-12 Score=114.11 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=83.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.++..+.|.||||||||||+++|++. +..+.+.+++.++..
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 97 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNL 97 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence 566789999999999999999999999984 334444443321100
Q ss_pred --------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 85 --------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 85 --------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
..+. ..+++.+-.+.+|....|.++++|| |+++.|...+..
T Consensus 98 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDE-----------Pts~LD~~~~~~ 166 (352)
T PRK11144 98 RYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE-----------PLASLDLPRKRE 166 (352)
T ss_pred HhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC-----------CcccCCHHHHHH
Confidence 0000 1233445666778889999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+++..+. ...+.++|++||+++.+..
T Consensus 167 l~~~L~~l~---~~~g~tii~vTHd~~~~~~ 194 (352)
T PRK11144 167 LLPYLERLA---REINIPILYVSHSLDEILR 194 (352)
T ss_pred HHHHHHHHH---HhcCCeEEEEecCHHHHHH
Confidence 999998873 2336889999999876644
No 269
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=3.5e-12 Score=110.39 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=80.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH---------------------------HH------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL---------------------------VQ------ 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~---------------------------~~------ 84 (270)
+|.+.+|..+.|.||+|+|||||+++|++. +..+.+.+++.++ ..
T Consensus 26 sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~ 105 (288)
T PRK13643 26 DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKD 105 (288)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHH
Confidence 456789999999999999999999999974 2333333332110 00
Q ss_pred ----h-hh------------------c-------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCC
Q 024249 85 ----K-YI------------------G-------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 128 (270)
Q Consensus 85 ----~-~~------------------~-------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~ 128 (270)
. .. + ..+++.+-.+.++....|.++++|| |+++
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDE-----------Pt~g 174 (288)
T PRK13643 106 VAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE-----------PTAG 174 (288)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CccC
Confidence 0 00 0 1122334555567778999999999 8999
Q ss_pred CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.|+..+..+.+++..+. +.+.+||++||+++.+..
T Consensus 175 LD~~~~~~l~~~l~~l~----~~g~til~vtHd~~~~~~ 209 (288)
T PRK13643 175 LDPKARIEMMQLFESIH----QSGQTVVLVTHLMDDVAD 209 (288)
T ss_pred CCHHHHHHHHHHHHHHH----HCCCEEEEEecCHHHHHH
Confidence 99999999999998873 236899999999887654
No 270
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.34 E-value=1e-10 Score=114.63 Aligned_cols=203 Identities=23% Similarity=0.338 Sum_probs=122.4
Q ss_pred cccccCcHHHHHHHHHHhhccccChHHHHhcCCC---CC-ceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHH
Q 024249 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIA---QP-KGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV 83 (270)
Q Consensus 11 ~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~---~~-~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~ 83 (270)
.++|.|.+..++.+.+.+..... |+. .| ..++|+||+|||||+++++|+... +.++++++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~--------gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRA--------GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 35789999999999988876321 111 22 468999999999999999999865 4568888888764
Q ss_pred Hhh-----hch----hhHHHHHHHHHHHhcCC-eEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc---CC---
Q 024249 84 QKY-----IGE----GSRMVRELFVMAREHAP-SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD---GF--- 147 (270)
Q Consensus 84 ~~~-----~~~----~~~~~~~~~~~a~~~~p-~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~---~~--- 147 (270)
... +|. ....-...+..+....| ++|+|||++.+ ++.....+..+++.-. +.
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka------------~~~v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA------------HPDVFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC------------CHHHHHHHHHHHhhCceecCCceE
Confidence 321 110 00001112333333344 89999998763 3566777777775421 00
Q ss_pred cCCCCeEEEEEeCCCCC-------------------------chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccC--
Q 024249 148 EASNKIKVLMATNRIDI-------------------------LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM-- 200 (270)
Q Consensus 148 ~~~~~~~vi~tt~~~~~-------------------------l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~-- 200 (270)
..-.+.++|+|||.... ..+.+.. |++..+.|.+++.+...+|++.++...
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~ 784 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYK 784 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 00123457888875211 1123444 788899999999999999887665442
Q ss_pred -----CCCCCCCHHHHHHHc-CCCC----HHHHHHHHHHHHHHHH
Q 024249 201 -----NLMRGIDLKKIAEKM-NGAS----GAELKAVCTEAGMFAL 235 (270)
Q Consensus 201 -----~~~~~~~~~~la~~~-~g~~----~~dl~~l~~~a~~~a~ 235 (270)
...-.++-+.+.... .||+ ++.|+.++++-....+
T Consensus 785 rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~l 829 (857)
T PRK10865 785 RLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPL 829 (857)
T ss_pred HHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHH
Confidence 111123322222222 2554 5778877776655443
No 271
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=3.1e-12 Score=107.79 Aligned_cols=114 Identities=25% Similarity=0.359 Sum_probs=78.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH-------------------------HH------hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-------------------------VQ------KY 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~-------------------------~~------~~ 86 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ .. ..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 101 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRV 101 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhh
Confidence 4567899999999999999999999999842 223332222100 00 00
Q ss_pred h------c----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 87 I------G----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 87 ~------~----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
. . ..+++.+-.+.+|...+|.++++|| |+++.|..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE-----------P~~~LD~~ 170 (239)
T cd03296 102 KPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE-----------PFGALDAK 170 (239)
T ss_pred ccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHH
Confidence 0 0 1112234445556778899999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
....+.+++..+. .+.+.+||++||+++.+..
T Consensus 171 ~~~~l~~~l~~~~---~~~~~tvii~sH~~~~~~~ 202 (239)
T cd03296 171 VRKELRRWLRRLH---DELHVTTVFVTHDQEEALE 202 (239)
T ss_pred HHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 9999999998873 2236789999999876543
No 272
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=8.1e-11 Score=103.11 Aligned_cols=169 Identities=14% Similarity=0.225 Sum_probs=108.5
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe--------EEEEcchh
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------FIRVSGSE 81 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------~i~i~~~~ 81 (270)
+|++|.|.+..++.+.+.+..- ..+..++++||+|+|||++++.+|..+.|. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 5899999999999999888652 345678999999999999999999864331 2222221
Q ss_pred HHHhhhchhhHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEE
Q 024249 82 LVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 157 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~ 157 (270)
.+. ......++++...+ ......|++||++|.+ +....+. ++..++. ...++.+|+
T Consensus 69 -~~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m------------~~~a~na---LLK~LEe--pp~~t~~il 128 (313)
T PRK05564 69 -NKK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM------------TEQAQNA---FLKTIEE--PPKGVFIIL 128 (313)
T ss_pred -cCC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc------------CHHHHHH---HHHHhcC--CCCCeEEEE
Confidence 001 01123355555433 2345579999998764 2233444 4444442 345677888
Q ss_pred EeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCC
Q 024249 158 ATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNG 217 (270)
Q Consensus 158 tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g 217 (270)
+|++++.+.+.+++++ ..+.+++|+.++-...+...... ........++..+.|
T Consensus 129 ~~~~~~~ll~TI~SRc---~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g 182 (313)
T PRK05564 129 LCENLEQILDTIKSRC---QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDG 182 (313)
T ss_pred EeCChHhCcHHHHhhc---eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCC
Confidence 8888998888887743 46899999998887777654321 112224455556555
No 273
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.34 E-value=4.6e-12 Score=105.94 Aligned_cols=112 Identities=22% Similarity=0.371 Sum_probs=78.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-------------------------------Hh-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV-------------------------------QK- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~-------------------------------~~- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l 109 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENV 109 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHH
Confidence 456789999999999999999999999984 23333333221100 00
Q ss_pred -----hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 86 -----YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 86 -----~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+ ..+++.+-.+.+|....|.++++|| |+++.|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDE-----------Pt~~LD 178 (228)
T PRK10584 110 ELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADE-----------PTGNLD 178 (228)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCCCC
Confidence 000 1112234444556778899999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
......+.+++..+. .+.+.+||++||+.+.+
T Consensus 179 ~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 210 (228)
T PRK10584 179 RQTGDKIADLLFSLN---REHGTTLILVTHDLQLA 210 (228)
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 999999999998873 23367899999997754
No 274
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.34 E-value=4.9e-12 Score=113.12 Aligned_cols=112 Identities=25% Similarity=0.345 Sum_probs=89.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHHHh--------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQK-------------------------------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~~~-------------------------------- 85 (270)
+|.+.+|..+.+.||+|||||||+|.+.+ .+..+.+++++.++.+-
T Consensus 356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~ 435 (580)
T COG4618 356 SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE 435 (580)
T ss_pred eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc
Confidence 45678889999999999999999999997 34566777777665210
Q ss_pred -----------------------------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 86 -----------------------------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 86 -----------------------------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.+| ...++.+-.+++|....|.+++||| |.++.|
T Consensus 436 ~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDE-----------PNsNLD 504 (580)
T COG4618 436 EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE-----------PNSNLD 504 (580)
T ss_pred cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecC-----------CCCCcc
Confidence 001 3456677778888899999999999 888999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.+....+.+.+..+ +..+.++|..||+|..+.
T Consensus 505 ~~GE~AL~~Ai~~~----k~rG~~vvviaHRPs~L~ 536 (580)
T COG4618 505 SEGEAALAAAILAA----KARGGTVVVIAHRPSALA 536 (580)
T ss_pred hhHHHHHHHHHHHH----HHcCCEEEEEecCHHHHh
Confidence 99998888888887 467889999999988654
No 275
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=4.9e-12 Score=107.60 Aligned_cols=113 Identities=19% Similarity=0.327 Sum_probs=79.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH------------------------------Hh--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV------------------------------QK-- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~------------------------------~~-- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~ 101 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGR 101 (255)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhcc
Confidence 355788999999999999999999999974 23333333321110 00
Q ss_pred -----hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 86 -----YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 86 -----~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+ ..++..+-.+.+|...+|.++++|| |+++.|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------P~~~LD 170 (255)
T PRK11231 102 SPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE-----------PTTYLD 170 (255)
T ss_pred chhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCC
Confidence 000 0112223444556778899999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
...+..+.+++..+. ..+.+||++||+++.+..
T Consensus 171 ~~~~~~l~~~l~~l~----~~~~tiii~tH~~~~~~~ 203 (255)
T PRK11231 171 INHQVELMRLMRELN----TQGKTVVTVLHDLNQASR 203 (255)
T ss_pred HHHHHHHHHHHHHHH----HCCCEEEEEECCHHHHHH
Confidence 999999999998873 236789999999887654
No 276
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.34 E-value=3.5e-12 Score=105.60 Aligned_cols=114 Identities=25% Similarity=0.323 Sum_probs=79.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH-------------------------HHh-----hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-------------------------VQK-----YI 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~-------------------------~~~-----~~ 87 (270)
++.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++.++ ... ..
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~ 97 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHP 97 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhc
Confidence 4678899999999999999999999999842 233333322110 000 00
Q ss_pred c-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 88 G-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 88 ~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
. ..+++.+-.+.+|...+|.++++|| |+++.|...+..
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE-----------Pt~~LD~~~~~~ 166 (213)
T TIGR01277 98 GLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE-----------PFSALDPLLREE 166 (213)
T ss_pred cCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CCccCCHHHHHH
Confidence 0 1112223444456678899999999 889999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+++..+. ...+.+||++||+.+.+..
T Consensus 167 ~~~~l~~~~---~~~~~tii~vsh~~~~~~~ 194 (213)
T TIGR01277 167 MLALVKQLC---SERQRTLLMVTHHLSDARA 194 (213)
T ss_pred HHHHHHHHH---HhcCCEEEEEeCCHHHHHh
Confidence 999998873 2346889999999876543
No 277
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=5.5e-12 Score=106.32 Aligned_cols=114 Identities=25% Similarity=0.435 Sum_probs=79.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH------------------------------Hh-h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV------------------------------QK-Y 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~------------------------------~~-~ 86 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++. .. .
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 100 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVL 100 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHH
Confidence 4568899999999999999999999999742 3344443321110 00 0
Q ss_pred h-------------c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 87 I-------------G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 87 ~-------------~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. + ..+++.+-.+.+|....|.++++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---------- 170 (241)
T cd03256 101 SGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE---------- 170 (241)
T ss_pred hhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------
Confidence 0 0 0111223344456678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. .+.+.+||++||+++.+..
T Consensus 171 -Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~~~ 210 (241)
T cd03256 171 -PVASLDPASSRQVMDLLKRIN---REEGITVIVSLHQVDLARE 210 (241)
T ss_pred -ccccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 899999999999999998873 2346789999999887664
No 278
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=3.7e-12 Score=109.71 Aligned_cols=113 Identities=27% Similarity=0.361 Sum_probs=80.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH----------------------------HHh-hh-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------VQK-YI- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------~~~-~~- 87 (270)
+|.+.+|..+.|.||+|+|||||+++|++. +..+.+.+++.++ ... ..
T Consensus 27 sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~ 106 (279)
T PRK13635 27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG 106 (279)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhh
Confidence 356789999999999999999999999974 2333333332111 000 00
Q ss_pred ----c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 88 ----G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 88 ----~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
+ ..+++.+-.+.+|...+|.+|++|| |+++.|+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE-----------Pt~gLD~~~ 175 (279)
T PRK13635 107 LENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE-----------ATSMLDPRG 175 (279)
T ss_pred HhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHH
Confidence 0 1122334555567778999999999 899999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
...+.+++..+. ...+.+||++||+++.+.
T Consensus 176 ~~~l~~~l~~l~---~~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 176 RREVLETVRQLK---EQKGITVLSITHDLDEAA 205 (279)
T ss_pred HHHHHHHHHHHH---HcCCCEEEEEecCHHHHH
Confidence 999999998873 234789999999987664
No 279
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=2.8e-12 Score=115.20 Aligned_cols=114 Identities=20% Similarity=0.300 Sum_probs=81.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.++..+.|.||||||||||+++|++. +..+.+.+++.++.
T Consensus 48 sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl 127 (400)
T PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNT 127 (400)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHH
Confidence 456788999999999999999999999984 33444444332110
Q ss_pred H---hh----------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 84 Q---KY----------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 84 ~---~~----------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. .. +. ...++.+-.+.+|....|.++++|| |+++.|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE-----------Pts~LD 196 (400)
T PRK10070 128 AFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE-----------AFSALD 196 (400)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCccCC
Confidence 0 00 00 1223334555567788999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+..+.+++..+. ...+.+||++||+++.+..
T Consensus 197 ~~~r~~l~~~L~~l~---~~~g~TIIivTHd~~~~~~ 230 (400)
T PRK10070 197 PLIRTEMQDELVKLQ---AKHQRTIVFISHDLDEAMR 230 (400)
T ss_pred HHHHHHHHHHHHHHH---HHCCCeEEEEECCHHHHHH
Confidence 999999999998873 2346789999999876644
No 280
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=4.1e-12 Score=109.89 Aligned_cols=115 Identities=18% Similarity=0.325 Sum_probs=81.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH---------------------------HH-----h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL---------------------------VQ-----K 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~---------------------------~~-----~ 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ .. .
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~ 106 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVERE 106 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHH
Confidence 356788999999999999999999999974 2333333332110 00 0
Q ss_pred ------hhc-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCC
Q 024249 86 ------YIG-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 128 (270)
Q Consensus 86 ------~~~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~ 128 (270)
..+ ..+++.+..+.+|...+|.++++|| |+++
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDE-----------Pt~~ 175 (286)
T PRK13646 107 IIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE-----------PTAG 175 (286)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC-----------Cccc
Confidence 000 1122334455567778999999999 8999
Q ss_pred CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
.|+..+..+.+++..+. ...+.+||++||+.+.+...
T Consensus 176 LD~~~~~~l~~~l~~l~---~~~g~tvl~vtH~~~~~~~~ 212 (286)
T PRK13646 176 LDPQSKRQVMRLLKSLQ---TDENKTIILVSHDMNEVARY 212 (286)
T ss_pred CCHHHHHHHHHHHHHHH---HhCCCEEEEEecCHHHHHHh
Confidence 99999999999998873 23478999999998876543
No 281
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.33 E-value=9.7e-12 Score=98.91 Aligned_cols=106 Identities=29% Similarity=0.419 Sum_probs=79.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcch---------------hHHHh----hhc--hhhHHHHH
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS---------------ELVQK----YIG--EGSRMVRE 96 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~---------------~~~~~----~~~--~~~~~~~~ 96 (270)
++.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++. .+... ... ...++.+-
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence 3567899999999999999999999999853 2343333220 11111 111 23456677
Q ss_pred HHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 97 LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 97 ~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
.+.+|....|.++++|| |+++.|......+.+++..+ +.++|++||+.+
T Consensus 101 ~laral~~~p~~lllDE-----------Pt~~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 101 AFARLLLHKPKFVFLDE-----------ATSALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHHHHcCCCEEEEEC-----------CccccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 78888899999999999 88999999999888888765 368999999975
No 282
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=3.8e-12 Score=109.42 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=79.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH------------------------H-----H----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL------------------------V-----Q---- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~------------------------~-----~---- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ . .
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 101 (274)
T PRK13644 22 NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAF 101 (274)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHh
Confidence 3567899999999999999999999999742 233333322111 0 0
Q ss_pred --hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 85 --KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 85 --~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
...+ ..+++.+-.+.+|...+|.++++|| |+++.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE-----------Pt~gLD~~ 170 (274)
T PRK13644 102 GPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE-----------VTSMLDPD 170 (274)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHH
Confidence 0000 1122334455567778999999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.+..+.+++..+. ..+.+||++||+++.+.
T Consensus 171 ~~~~l~~~l~~l~----~~g~til~~tH~~~~~~ 200 (274)
T PRK13644 171 SGIAVLERIKKLH----EKGKTIVYITHNLEELH 200 (274)
T ss_pred HHHHHHHHHHHHH----hCCCEEEEEecCHHHHh
Confidence 9999999998873 24789999999988763
No 283
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.33 E-value=5.3e-12 Score=105.42 Aligned_cols=113 Identities=20% Similarity=0.325 Sum_probs=78.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH--------------------------HHh------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL--------------------------VQK------ 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~--------------------------~~~------ 85 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++ ...
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~ 106 (225)
T PRK10247 27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQ 106 (225)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHh
Confidence 456789999999999999999999999973 2233333222110 000
Q ss_pred hhc-----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 86 YIG-----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 86 ~~~-----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
..+ ..++..+-.+.+|....|.++++|| |+++.|......
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~~LD~~~~~~ 175 (225)
T PRK10247 107 IRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE-----------ITSALDESNKHN 175 (225)
T ss_pred hcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHH
Confidence 000 0112334455567778999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+.+++..+. .+.+.+||++||+.+.+.
T Consensus 176 l~~~l~~~~---~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 176 VNEIIHRYV---REQNIAVLWVTHDKDEIN 202 (225)
T ss_pred HHHHHHHHH---HhcCCEEEEEECChHHHH
Confidence 999988873 233678999999987653
No 284
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.33 E-value=4.5e-12 Score=108.25 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=80.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcch--------------h----HHH--hhhc---------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS--------------E----LVQ--KYIG--------- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~--------------~----~~~--~~~~--------- 88 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++. . +.. ...+
T Consensus 44 s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 123 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAM 123 (264)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 5668899999999999999999999999852 2333322210 0 000 0000
Q ss_pred ---------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCC
Q 024249 89 ---------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF 147 (270)
Q Consensus 89 ---------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 147 (270)
..++..+-.+.+|....|.++++|| |+++.|......+.+++..+.
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDE-----------Pt~gLD~~~~~~l~~~L~~~~-- 190 (264)
T PRK13546 124 TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE-----------ALSVGDQTFAQKCLDKIYEFK-- 190 (264)
T ss_pred HHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHHH--
Confidence 1222334556667788999999999 888999999999999988772
Q ss_pred cCCCCeEEEEEeCCCCCchh
Q 024249 148 EASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 148 ~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+.++|++||+.+.+..
T Consensus 191 --~~g~tiIiisH~~~~i~~ 208 (264)
T PRK13546 191 --EQNKTIFFVSHNLGQVRQ 208 (264)
T ss_pred --HCCCEEEEEcCCHHHHHH
Confidence 346789999999887765
No 285
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.33 E-value=3.3e-12 Score=108.36 Aligned_cols=115 Identities=26% Similarity=0.365 Sum_probs=81.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcch------------------hHHHh--------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS------------------ELVQK-------------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~------------------~~~~~-------------- 85 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++. .+...
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILP 103 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHH
Confidence 4568899999999999999999999999742 2222221110 00000
Q ss_pred -------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCC
Q 024249 86 -------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 150 (270)
Q Consensus 86 -------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 150 (270)
.+. ..+++.+-.+.+|...+|.++++|| |+++.|......+.+++..+. ..
T Consensus 104 ~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~L~~~~---~~ 169 (251)
T PRK09544 104 ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE-----------PTQGVDVNGQVALYDLIDQLR---RE 169 (251)
T ss_pred HHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH---Hh
Confidence 000 1223445666677888999999999 899999999999999988763 22
Q ss_pred CCeEEEEEeCCCCCchhh
Q 024249 151 NKIKVLMATNRIDILDQA 168 (270)
Q Consensus 151 ~~~~vi~tt~~~~~l~~~ 168 (270)
.+.+||++||+.+.+...
T Consensus 170 ~g~tiiivsH~~~~i~~~ 187 (251)
T PRK09544 170 LDCAVLMVSHDLHLVMAK 187 (251)
T ss_pred cCCEEEEEecCHHHHHHh
Confidence 367899999998877553
No 286
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.33 E-value=3.3e-12 Score=113.37 Aligned_cols=114 Identities=29% Similarity=0.416 Sum_probs=82.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-----------------------------H-H-h-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL-----------------------------V-Q-K- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~-----------------------------~-~-~- 85 (270)
+|.+.++..+.|.||||||||||+++|++. +..+.+.+++.++ . . .
T Consensus 22 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~ 101 (353)
T PRK10851 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTV 101 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhh
Confidence 456788999999999999999999999983 2334443332211 0 0 0
Q ss_pred -------------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 86 -------------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 86 -------------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
++. ...++.+-.+.+|...+|.++++|| |.++.|..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE-----------P~s~LD~~ 170 (353)
T PRK10851 102 LPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE-----------PFGALDAQ 170 (353)
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCccCCHH
Confidence 000 1223345666677888999999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+..+.+.+..+. .+.+.++|++||+++.+..
T Consensus 171 ~r~~l~~~L~~l~---~~~g~tii~vTHd~~ea~~ 202 (353)
T PRK10851 171 VRKELRRWLRQLH---EELKFTSVFVTHDQEEAME 202 (353)
T ss_pred HHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 9999999998873 3447899999999887654
No 287
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=5.6e-12 Score=107.85 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=80.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH---------------------------Hh-hh--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------QK-YI-- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~---------------------------~~-~~-- 87 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++. .. ..
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (265)
T PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGR 110 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCc
Confidence 4567899999999999999999999999742 2333333321110 00 00
Q ss_pred -----------c--------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 88 -----------G--------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 88 -----------~--------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. ..+++.+-.+.+|...+|.++++|| |+++.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE-----------Pt~~LD 179 (265)
T PRK10575 111 YPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDE-----------PTSALD 179 (265)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCC
Confidence 0 1122234445557778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
......+.+++..+. ...+.+||++||+++.+..
T Consensus 180 ~~~~~~~~~~l~~l~---~~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 180 IAHQVDVLALVHRLS---QERGLTVIAVLHDINMAAR 213 (265)
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 999999999998873 2336789999999887654
No 288
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.33 E-value=4.3e-12 Score=112.91 Aligned_cols=114 Identities=24% Similarity=0.307 Sum_probs=81.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-------------------------------Hh-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV-------------------------------QK- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~-------------------------------~~- 85 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 96 (354)
T TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNL 96 (354)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHH
Confidence 466788999999999999999999999984 23333333221110 00
Q ss_pred h-------------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 86 Y-------------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 86 ~-------------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
. +. ..+++.+-.+.+|....|.++++|| |+++.|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE-----------Pts~LD~~ 165 (354)
T TIGR02142 97 RYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE-----------PLAALDDP 165 (354)
T ss_pred HHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC-----------CCcCCCHH
Confidence 0 00 1223345556667788999999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+..+.+++..+. .+.+.++|++||+++.+..
T Consensus 166 ~~~~l~~~L~~l~---~~~g~tiiivtH~~~~~~~ 197 (354)
T TIGR02142 166 RKYEILPYLERLH---AEFGIPILYVSHSLQEVLR 197 (354)
T ss_pred HHHHHHHHHHHHH---HhcCCEEEEEecCHHHHHH
Confidence 9999999998873 2336889999999887654
No 289
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.33 E-value=5.8e-12 Score=107.27 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|...+|.++++|| |+++.|......+.+++..+. +.+.+||++||+++.+..
T Consensus 160 rv~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~l~----~~g~tiiivsH~~~~~~~ 217 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDE-----------PTSALDPELVGEVLRIMQQLA----EEGKTMVVVTHEMGFARH 217 (257)
T ss_pred HHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHH
Confidence 4444556778999999999 899999999999999998873 347889999999887764
No 290
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.33 E-value=4.7e-12 Score=107.89 Aligned_cols=114 Identities=24% Similarity=0.350 Sum_probs=78.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH---------------------------HHh-----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL---------------------------VQK----- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~---------------------------~~~----- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ ...
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 101 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGR 101 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhh
Confidence 356788999999999999999999999984 2333333322110 000
Q ss_pred h-h----------------------------c--hhhHHHHHHHHHHHh------cCCeEEEEcCCCcccCcccCCCCCC
Q 024249 86 Y-I----------------------------G--EGSRMVRELFVMARE------HAPSIIFMDEIDSIGSARMESGSGN 128 (270)
Q Consensus 86 ~-~----------------------------~--~~~~~~~~~~~~a~~------~~p~il~lDeid~l~~~~~~~~~~~ 128 (270)
. . . ..+++.+-.+.+|.. ..|.++++|| |+++
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDE-----------Pt~~ 170 (258)
T PRK13548 102 APHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDE-----------PTSA 170 (258)
T ss_pred cccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC-----------Cccc
Confidence 0 0 0 111223444445666 4799999999 8999
Q ss_pred CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.|......+.+++..+. .+.+.+||++||+++.+..
T Consensus 171 LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~~ 206 (258)
T PRK13548 171 LDLAHQHHVLRLARQLA---HERGLAVIVVLHDLNLAAR 206 (258)
T ss_pred CCHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHHHH
Confidence 99999999999998873 1346789999999887654
No 291
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=6.6e-12 Score=107.64 Aligned_cols=113 Identities=18% Similarity=0.284 Sum_probs=79.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------H-----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV----------------------------Q----- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~----------------------------~----- 84 (270)
++.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++. .
T Consensus 29 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~ 108 (269)
T PRK13648 29 SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG 108 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhh
Confidence 356789999999999999999999999984 23343443332110 0
Q ss_pred -hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 85 -KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 85 -~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
...+ ..+++.+-.+.+|....|.++++|| |+++.|...
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE-----------Pt~~LD~~~ 177 (269)
T PRK13648 109 LENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE-----------ATSMLDPDA 177 (269)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHH
Confidence 0000 1122234444556778999999999 899999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
...+.+++..+. ...+.+||++||+++.+.
T Consensus 178 ~~~l~~~L~~~~---~~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 178 RQNLLDLVRKVK---SEHNITIISITHDLSEAM 207 (269)
T ss_pred HHHHHHHHHHHH---HhcCCEEEEEecCchHHh
Confidence 999999998873 234678999999988764
No 292
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=4.7e-12 Score=106.19 Aligned_cols=113 Identities=24% Similarity=0.316 Sum_probs=80.9
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH----------------------------HH--hh--
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------------VQ--KY-- 86 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~----------------------------~~--~~-- 86 (270)
+.+.+|..+.|.||+|+|||||+++|++.. ..+.+.+++.++ .. ..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~ 100 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK 100 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc
Confidence 457899999999999999999999999842 334443332110 00 00
Q ss_pred ---hc--------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHH
Q 024249 87 ---IG--------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 137 (270)
Q Consensus 87 ---~~--------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l 137 (270)
.. ..+++.+-.+.+|...+|.++++|| |+.+.|......+
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE-----------P~~gLD~~~~~~l 169 (232)
T cd03300 101 KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE-----------PLGALDLKLRKDM 169 (232)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHHHH
Confidence 00 1122334555667778999999999 8899999999999
Q ss_pred HHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 138 LELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 138 ~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+++..+. .+.+.+||++||+.+.+..
T Consensus 170 ~~~l~~~~---~~~~~tiii~sh~~~~~~~ 196 (232)
T cd03300 170 QLELKRLQ---KELGITFVFVTHDQEEALT 196 (232)
T ss_pred HHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 99998873 2236899999999887654
No 293
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.33 E-value=5.7e-12 Score=107.01 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|....|.++++|| |+++.|...+..+.+++..+. .+.+.++|++||+++.+..
T Consensus 154 rv~laral~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~~~ 212 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDE-----------VTSALDPELVGEVLNVIRRLA---SEHDLTMLLVTHEMGFARE 212 (252)
T ss_pred HHHHHHHHHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHHHH
Confidence 4444556778899999999 889999999999999998773 2346899999999887654
No 294
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.32 E-value=9.2e-12 Score=104.81 Aligned_cols=111 Identities=22% Similarity=0.327 Sum_probs=79.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH--------------------------h-hh---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ--------------------------K-YI--- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~--------------------------~-~~--- 87 (270)
+|.+.+|..+.|.||+|+|||||+++|++.. ..+.+.+++.++.. . ..
T Consensus 23 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 102 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP 102 (238)
T ss_pred EEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCC
Confidence 4668899999999999999999999999852 33444433311100 0 00
Q ss_pred -----------------------------------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 88 -----------------------------------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 88 -----------------------------------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. ..+++.+-.+.+|...+|.++++|| |+++.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE-----------P~~gLD 171 (238)
T cd03249 103 DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDE-----------ATSALD 171 (238)
T ss_pred CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------ccccCC
Confidence 0 1112334455667778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
...+..+.+++..+ . .+.+||++||+++.+.
T Consensus 172 ~~~~~~l~~~l~~~----~-~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 172 AESEKLVQEALDRA----M-KGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHHHHHHHHHh----c-CCCEEEEEeCCHHHHh
Confidence 99999999999876 2 3678999999987764
No 295
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.32 E-value=2e-10 Score=101.38 Aligned_cols=133 Identities=34% Similarity=0.444 Sum_probs=88.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh--hhchhhHHH------------HHHHHHHHhcCCeEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK--YIGEGSRMV------------RELFVMAREHAPSIIF 110 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~--~~~~~~~~~------------~~~~~~a~~~~p~il~ 110 (270)
.+.+++|.||||+|||++++.+|...+.+++++.|..-... ..|...-.. ..+|.. .. .+++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~---~~-~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAA---VR-VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccc---cc-eEEE
Confidence 36889999999999999999999999999999988743221 111100000 000110 01 4999
Q ss_pred EcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc----C---CcCCCCeEEEEEeC-----CCCCchhhhcCCCCcceE
Q 024249 111 MDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD----G---FEASNKIKVLMATN-----RIDILDQALLRPGRIDRK 178 (270)
Q Consensus 111 lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~----~---~~~~~~~~vi~tt~-----~~~~l~~~l~r~~r~~~~ 178 (270)
+|||+. .++..+..+.+.+++.. + .....+..|++|+| ....+++++.+ ||-..
T Consensus 118 ~DEInr------------a~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~ 183 (329)
T COG0714 118 LDEINR------------APPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLR 183 (329)
T ss_pred Eecccc------------CCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEE
Confidence 999875 34677888888887721 1 22335677888888 55678889988 88777
Q ss_pred EEeCCC-CHHHHHHHHHH
Q 024249 179 IEFPNP-NEESRLDILKI 195 (270)
Q Consensus 179 i~~~~p-~~~~r~~il~~ 195 (270)
+.++.| ...+...++..
T Consensus 184 ~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 184 IYVDYPDSEEEERIILAR 201 (329)
T ss_pred EecCCCCchHHHHHHHHh
Confidence 888888 44444444443
No 296
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=5.9e-12 Score=104.31 Aligned_cols=113 Identities=22% Similarity=0.336 Sum_probs=78.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH-------------------------------H--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV-------------------------------Q-- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~-------------------------------~-- 84 (270)
+|.+.+ ..+.|.||||+|||||+++|++.. ..+.+.+++.++. .
T Consensus 18 sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l 96 (214)
T cd03297 18 DFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENL 96 (214)
T ss_pred eEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHH
Confidence 456788 999999999999999999999742 2333333221100 0
Q ss_pred ----hh--hc--------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 85 ----KY--IG--------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 85 ----~~--~~--------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
.. .. ...++.+-.+.+|....|.++++|| |+++.|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE-----------Pt~~LD~~ 165 (214)
T cd03297 97 AFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE-----------PFSALDRA 165 (214)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHH
Confidence 00 00 1122234445556778999999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
....+.+++..+. .+.+.+||++||+.+.+..
T Consensus 166 ~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 166 LRLQLLPELKQIK---KNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred HHHHHHHHHHHHH---HHcCcEEEEEecCHHHHHH
Confidence 9999999998873 2236789999999887654
No 297
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.32 E-value=7.7e-12 Score=107.41 Aligned_cols=113 Identities=22% Similarity=0.335 Sum_probs=78.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH--------------------------HHh-----h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL--------------------------VQK-----Y 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~--------------------------~~~-----~ 86 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ ... +
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~ 106 (272)
T PRK15056 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRY 106 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccc
Confidence 3567899999999999999999999999742 223222222110 000 0
Q ss_pred ---------------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 87 ---------------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 87 ---------------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
++ ..+++.+-.+.+|...+|.++++|| |+++.|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE-----------Pt~~LD~ 175 (272)
T PRK15056 107 GHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDE-----------PFTGVDV 175 (272)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCccCCH
Confidence 00 1112234444556778899999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.....+.+++..+. +.+.+||++||+++.+..
T Consensus 176 ~~~~~l~~~L~~~~----~~g~tviivsH~~~~~~~ 207 (272)
T PRK15056 176 KTEARIISLLRELR----DEGKTMLVSTHNLGSVTE 207 (272)
T ss_pred HHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHH
Confidence 99999999998873 236789999999876654
No 298
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=9.3e-12 Score=104.61 Aligned_cols=111 Identities=21% Similarity=0.330 Sum_probs=80.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~--------------------------------- 84 (270)
++.+.+|..+.|.||+|+|||||+++|++.. ..+.+.+++.++..
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 100 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP 100 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCC
Confidence 4567899999999999999999999999842 33434433211100
Q ss_pred -----------------hh---------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 -----------------KY---------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 -----------------~~---------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.. .. ..+++.+-.+.+|...+|.++++|| |+++.|
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDE-----------P~~~LD 169 (236)
T cd03253 101 DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDE-----------ATSALD 169 (236)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCC
Confidence 00 00 0122344556677788999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
......+.+++..+. + +.+||++||+.+.+.
T Consensus 170 ~~~~~~l~~~l~~~~----~-~~tiii~sh~~~~~~ 200 (236)
T cd03253 170 THTEREIQAALRDVS----K-GRTTIVIAHRLSTIV 200 (236)
T ss_pred HHHHHHHHHHHHHhc----C-CCEEEEEcCCHHHHH
Confidence 999999999998773 3 678999999988764
No 299
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.32 E-value=1.2e-11 Score=103.08 Aligned_cols=111 Identities=25% Similarity=0.317 Sum_probs=77.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH------------------------HHh--h-------
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL------------------------VQK--Y------- 86 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~------------------------~~~--~------- 86 (270)
.+.+|+.+.|.||||+|||||+++|++. +..+.+.+++.++ ... +
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 4678999999999999999999999974 2233333322110 000 0
Q ss_pred -h--c----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 87 -I--G----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 87 -~--~----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
. . ..+++.+-.+.+|...+|.++++|| |+++.|.....
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE-----------P~~~LD~~~~~ 150 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDE-----------PFTGLDMPTQE 150 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHH
Confidence 0 0 0112223444556778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. +.+.++|++||+.+.+..
T Consensus 151 ~l~~~l~~~~----~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 151 LLTELFIELA----GAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHHHHHH----HcCCEEEEEeCCHHHHHH
Confidence 9999998873 347899999999886654
No 300
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=7.4e-12 Score=107.46 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=78.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH----------------------------HHh----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------------VQK---- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~----------------------------~~~---- 85 (270)
+|.+.+|..+.|.||+|+|||||+++|++.. ..+.+.+++.++ ...
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 108 (271)
T PRK13632 29 SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG 108 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhH
Confidence 3567899999999999999999999999842 233333222110 000
Q ss_pred --h--hc----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 86 --Y--IG----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 86 --~--~~----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
. .. ..+++.+-.+.+|...+|.++++|| |+++.|...
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE-----------P~~gLD~~~ 177 (271)
T PRK13632 109 LENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE-----------STSMLDPKG 177 (271)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHH
Confidence 0 00 0112234445557778999999999 889999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
...+.+++..+. ...+.+||++||+++.+.
T Consensus 178 ~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 207 (271)
T PRK13632 178 KREIKKIMVDLR---KTRKKTLISITHDMDEAI 207 (271)
T ss_pred HHHHHHHHHHHH---HhcCcEEEEEEechhHHh
Confidence 999999998873 223478999999988763
No 301
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=6.5e-12 Score=108.69 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 94 VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 94 ~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+-.+.+|...+|.+|++|| |+++.|...+..+.+++..+. +.+.+||++||+.+.+..
T Consensus 152 qrl~laral~~~p~lLlLDE-----------Pt~gLD~~~~~~l~~~l~~l~----~~g~tvlivsH~~~~~~~ 210 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDE-----------PAAGLDPEGRKEMMQLFKDYQ----KAGHTVILVTHNMDDVAE 210 (287)
T ss_pred HHHHHHHHHHcCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHH
Confidence 34455567778999999999 899999999999999998873 347889999999887654
No 302
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.32 E-value=5.7e-12 Score=105.93 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+.+|....|.++++|| |+++.|......+.+++..+. +.+.+||++||+++.+..
T Consensus 151 rv~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~vsH~~~~~~~ 208 (236)
T cd03219 151 RLEIARALATDPKLLLLDE-----------PAAGLNPEETEELAELIRELR----ERGITVLLVEHDMDVVMS 208 (236)
T ss_pred HHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEecCHHHHHH
Confidence 3444556678899999999 899999999999999998873 246789999999887654
No 303
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=4.8e-12 Score=109.48 Aligned_cols=114 Identities=17% Similarity=0.291 Sum_probs=80.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH------------------------------H---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV------------------------------Q--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~------------------------------~--- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. .
T Consensus 27 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 106 (287)
T PRK13637 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIA 106 (287)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHH
Confidence 356789999999999999999999999973 22333332221100 0
Q ss_pred ---hh--------------------h----------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 85 ---KY--------------------I----------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 85 ---~~--------------------~----------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
.. . . ..+++.+-.+.+|...+|.+|++|| |+++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDE-----------Pt~gL 175 (287)
T PRK13637 107 FGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE-----------PTAGL 175 (287)
T ss_pred hHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CccCC
Confidence 00 0 0 1122345555667778999999999 89999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|...+..+.+++..+. ...+.+||++||+.+.+..
T Consensus 176 D~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~~~ 210 (287)
T PRK13637 176 DPKGRDEILNKIKELH---KEYNMTIILVSHSMEDVAK 210 (287)
T ss_pred CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 9999999999998873 2347899999999877654
No 304
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.31 E-value=1.1e-11 Score=104.22 Aligned_cols=111 Identities=22% Similarity=0.337 Sum_probs=79.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.+|..+.|.||+|+|||||+++|++.. ..+.+.+++.++..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 101 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADP 101 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCC
Confidence 4567899999999999999999999999742 23333333211100
Q ss_pred -----h---------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 -----K---------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 -----~---------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. .+. ...++.+-.+.+|....|.++++|| |+++.|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE-----------P~~~LD 170 (237)
T cd03252 102 GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDE-----------ATSALD 170 (237)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC-----------CcccCC
Confidence 0 000 0122344556667778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
......+.+++..+. . +.+||++||+++.+.
T Consensus 171 ~~~~~~l~~~l~~~~----~-~~tiii~sH~~~~~~ 201 (237)
T cd03252 171 YESEHAIMRNMHDIC----A-GRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHHHHHHHHHhc----C-CCEEEEEeCCHHHHH
Confidence 999999999998872 2 578999999988764
No 305
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.31 E-value=6.3e-12 Score=106.27 Aligned_cols=112 Identities=20% Similarity=0.292 Sum_probs=79.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcch------------------hHHHh----------------
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS------------------ELVQK---------------- 85 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~------------------~~~~~---------------- 85 (270)
.+.++..+.|.||||+|||||+++|++.. ..+.+.+++. +....
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l 100 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIA 100 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHH
Confidence 45678999999999999999999999842 2233322220 00000
Q ss_pred -----------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCC
Q 024249 86 -----------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 152 (270)
Q Consensus 86 -----------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 152 (270)
.++ ..+++.+-.+.+|....|.++++|| |+++.|...+..+.+++..+. ...+
T Consensus 101 ~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~ 166 (246)
T cd03237 101 KPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDE-----------PSAYLDVEQRLMASKVIRRFA---ENNE 166 (246)
T ss_pred HHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcC
Confidence 000 1223445666678888999999999 899999999999999998873 2346
Q ss_pred eEEEEEeCCCCCchh
Q 024249 153 IKVLMATNRIDILDQ 167 (270)
Q Consensus 153 ~~vi~tt~~~~~l~~ 167 (270)
.+||++||+.+.+..
T Consensus 167 ~tiiivsHd~~~~~~ 181 (246)
T cd03237 167 KTAFVVEHDIIMIDY 181 (246)
T ss_pred CEEEEEeCCHHHHHH
Confidence 889999999876654
No 306
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.2e-11 Score=103.72 Aligned_cols=111 Identities=25% Similarity=0.426 Sum_probs=79.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------H-------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------Q------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------~------- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++..+. .
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 101 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP 101 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCC
Confidence 356789999999999999999999999974 23343433321110 0
Q ss_pred -----------------hhh---------------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 -----------------KYI---------------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 -----------------~~~---------------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
... . ..+++.+-.+.+|...+|.++++|| |+++.|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE-----------P~~~LD 170 (234)
T cd03251 102 GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDE-----------ATSALD 170 (234)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------ccccCC
Confidence 000 0 0122345556667778999999999 889999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
......+.+++..+. + +.+||++||+.+.+.
T Consensus 171 ~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~ 201 (234)
T cd03251 171 TESERLVQAALERLM----K-NRTTFVIAHRLSTIE 201 (234)
T ss_pred HHHHHHHHHHHHHhc----C-CCEEEEEecCHHHHh
Confidence 999999999998873 2 578999999988764
No 307
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.2e-11 Score=103.41 Aligned_cols=110 Identities=22% Similarity=0.346 Sum_probs=78.8
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~---------------------------------- 84 (270)
|.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++.++..
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~ 103 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPN 103 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCC
Confidence 567889999999999999999999999843 33444443321100
Q ss_pred ----h------------h---------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ----K------------Y---------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ----~------------~---------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
. + .. ...++.+-.+.+|...+|.++++|| |+++.|.
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDE-----------P~~~LD~ 172 (229)
T cd03254 104 ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDE-----------ATSNIDT 172 (229)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------ccccCCH
Confidence 0 0 00 0122344555667778999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.....+.+++..+. .+.+||++||+++.+.
T Consensus 173 ~~~~~l~~~l~~~~-----~~~tii~~sh~~~~~~ 202 (229)
T cd03254 173 ETEKLIQEALEKLM-----KGRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEEEecCHHHHh
Confidence 99999999998772 2578999999987653
No 308
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=7.7e-12 Score=107.57 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=80.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH-------------------------H---------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-------------------------V--------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~-------------------------~--------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ .
T Consensus 22 sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~ 101 (275)
T PRK13639 22 NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVA 101 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHH
Confidence 4568899999999999999999999999732 233333322111 0
Q ss_pred -Hh-hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 84 -QK-YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 84 -~~-~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.. ..+ ..+++.+..+.+|....|.++++|| |+++.|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE-----------Pt~gLD~ 170 (275)
T PRK13639 102 FGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE-----------PTSGLDP 170 (275)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCcCCCH
Confidence 00 000 1122234445557778999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. +.+.+||++||+++.+..
T Consensus 171 ~~~~~l~~~l~~l~----~~~~til~vtH~~~~~~~ 202 (275)
T PRK13639 171 MGASQIMKLLYDLN----KEGITIIISTHDVDLVPV 202 (275)
T ss_pred HHHHHHHHHHHHHH----HCCCEEEEEecCHHHHHH
Confidence 99999999998873 237889999999887664
No 309
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=6.7e-12 Score=109.34 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 93 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 93 ~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+.+-.++++....|.++++|| |+++.|+.....+.+++..+. ..+.+||++||+.+.+...
T Consensus 171 kqrvalA~aL~~~P~lLlLDE-----------Pt~~LD~~~~~~l~~~l~~l~----~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 171 KRRVALAGILAMEPDFLVFDE-----------PTAGLDPQGVKEILEIFDNLN----KQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred HHHHHHHHHHHhCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH----HCCCEEEEEeeCHHHHHHh
Confidence 344555667778999999999 899999999999999998873 3478899999998876543
No 310
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=5.6e-12 Score=106.41 Aligned_cols=114 Identities=25% Similarity=0.364 Sum_probs=79.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH---------------------------------HH
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL---------------------------------VQ 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~---------------------------------~~ 84 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ ..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 100 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVP 100 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHH
Confidence 4567899999999999999999999999742 223333322110 00
Q ss_pred hhh------------------c--------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 85 KYI------------------G--------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 85 ~~~------------------~--------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
... + ..+++.+-.+.+|....|.++++|| |+++.|..
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~~LD~~ 169 (242)
T cd03295 101 KLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE-----------PFGALDPI 169 (242)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC-----------CcccCCHH
Confidence 000 0 0112234455567778899999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
....+.+++..+. ...+.+||++||+++.+..
T Consensus 170 ~~~~l~~~L~~~~---~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 170 TRDQLQEEFKRLQ---QELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred HHHHHHHHHHHHH---HHcCCEEEEEecCHHHHHH
Confidence 9999999998873 2236789999999876654
No 311
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.31 E-value=7.7e-12 Score=105.55 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|....|.++++|| |+++.|......+.+++..+. +.+.+||++||+++.+..
T Consensus 152 rl~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDE-----------IDSGLDIDALKIVAEGINRLR----EPDRSFLIITHYQRLLNY 209 (243)
T ss_pred HHHHHHHHhcCCCEEEecC-----------CcccCCHHHHHHHHHHHHHHH----HCCcEEEEEEecHHHHHh
Confidence 3444556667899999999 899999999999999998873 246789999999886654
No 312
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.31 E-value=8.1e-12 Score=104.38 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
-.+.+|....|.++++|| |+++.|...+..+.+++..+. .+.+.+||++||+++.+..
T Consensus 154 v~laral~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 154 VAIARALALNPKLLIADE-----------PTSALDVSVQAQILDLLKKLQ---EELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHHHHHhcCCCEEEecC-----------CCCCCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 333446667899999999 899999999999999998873 2236789999999876653
No 313
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=7.6e-12 Score=108.40 Aligned_cols=114 Identities=17% Similarity=0.327 Sum_probs=80.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH---------------------------HHh-----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL---------------------------VQK----- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~---------------------------~~~----- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ ...
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~en 106 (290)
T PRK13634 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKD 106 (290)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHH
Confidence 356889999999999999999999999973 2233333322110 000
Q ss_pred ------hhc-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCC
Q 024249 86 ------YIG-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 128 (270)
Q Consensus 86 ------~~~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~ 128 (270)
..+ ...++.+-.+.+|...+|.++++|| |+++
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDE-----------Pt~~ 175 (290)
T PRK13634 107 ICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE-----------PTAG 175 (290)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC-----------Cccc
Confidence 000 1122334445557778999999999 8999
Q ss_pred CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.|+..+..+.+++..+. ...+.+||++||+++.+..
T Consensus 176 LD~~~~~~l~~~L~~l~---~~~g~tviiitHd~~~~~~ 211 (290)
T PRK13634 176 LDPKGRKEMMEMFYKLH---KEKGLTTVLVTHSMEDAAR 211 (290)
T ss_pred CCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 99999999999998873 3347899999999887654
No 314
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=7.4e-12 Score=108.11 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=80.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-------------------------H-----H---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL-------------------------V-----Q--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~-------------------------~-----~--- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ . .
T Consensus 26 s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 105 (283)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVS 105 (283)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHH
Confidence 356789999999999999999999999974 2333333332111 0 0
Q ss_pred ---hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ---KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ---~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
...+ ..+++.+-.+.+|...+|.++++|| |+++.|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDE-----------Pt~gLD~ 174 (283)
T PRK13636 106 FGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE-----------PTAGLDP 174 (283)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CccCCCH
Confidence 0000 1122234455567778999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. .+.+.+||++||+++.+..
T Consensus 175 ~~~~~l~~~l~~l~---~~~g~tillvsH~~~~~~~ 207 (283)
T PRK13636 175 MGVSEIMKLLVEMQ---KELGLTIIIATHDIDIVPL 207 (283)
T ss_pred HHHHHHHHHHHHHH---HhCCCEEEEEecCHHHHHH
Confidence 99999999998873 2336889999999887764
No 315
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=6.5e-12 Score=108.31 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|...+|.++++|| |+++.|......+.+++..+. +.+.+||++||+++.+..
T Consensus 153 rv~la~al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiiivsH~~~~~~~ 210 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDE-----------PTAGLDPKGRKELMTLFKKLH----QSGMTIVLVTHLMDDVAN 210 (280)
T ss_pred HHHHHHHHHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeccHHHHHH
Confidence 4444556778899999999 899999999999999998873 236789999999876644
No 316
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.31 E-value=6.8e-12 Score=107.44 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=79.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH--------------------------------HH-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL--------------------------------VQ- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~--------------------------------~~- 84 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++ ..
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 112 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDF 112 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHH
Confidence 4568899999999999999999999999742 222222221100 00
Q ss_pred --h-hhc-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 --K-YIG-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 --~-~~~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. ..+ ..+++.+-.+.+|...+|.++++|| |+++.|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE-----------Pt~~LD 181 (267)
T PRK15112 113 PLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADE-----------ALASLD 181 (267)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcC-----------CcccCC
Confidence 0 000 0112234445556778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
......+.+++..+. ...+.+||++||+++.+..
T Consensus 182 ~~~~~~l~~~l~~~~---~~~g~tviivsH~~~~~~~ 215 (267)
T PRK15112 182 MSMRSQLINLMLELQ---EKQGISYIYVTQHLGMMKH 215 (267)
T ss_pred HHHHHHHHHHHHHHH---HHcCcEEEEEeCCHHHHHH
Confidence 999999999998873 2336789999999887654
No 317
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.31 E-value=8.4e-12 Score=106.76 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=80.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH---------------------------Hh-hh--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------QK-YI-- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~---------------------------~~-~~-- 87 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++. .. ..
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~ 106 (265)
T PRK10253 27 TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGR 106 (265)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCc
Confidence 4567899999999999999999999999842 2333433321110 00 00
Q ss_pred -----------c--------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 88 -----------G--------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 88 -----------~--------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. ..+++.+-.+.+|....|.++++|| |+++.|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE-----------Pt~gLD 175 (265)
T PRK10253 107 YPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDE-----------PTTWLD 175 (265)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeC-----------ccccCC
Confidence 0 0112234445567778999999999 889999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
......+.+++..+. ...+.+||++||+++.+...
T Consensus 176 ~~~~~~l~~~L~~l~---~~~~~tiii~tH~~~~~~~~ 210 (265)
T PRK10253 176 ISHQIDLLELLSELN---REKGYTLAAVLHDLNQACRY 210 (265)
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHHh
Confidence 999999999998873 22367899999998876543
No 318
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=9.4e-12 Score=102.19 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=79.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEEEEcchhHHH------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQ------------------------------ 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~i~~~~~~~------------------------------ 84 (270)
+|.+.++..+.|.||||+|||||++.|++.. ..+.+.+++.++..
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 106 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDF 106 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhh
Confidence 3567899999999999999999999999853 35555554432100
Q ss_pred -------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeE-
Q 024249 85 -------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK- 154 (270)
Q Consensus 85 -------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~- 154 (270)
..+. ...++.+-.+.+|....|.++++|| |+++.|...+..+.+++..+. ...+.+
T Consensus 107 ~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDE-----------Pt~~LD~~~~~~~~~~l~~~~---~~~~~t~ 172 (202)
T cd03233 107 ALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDN-----------STRGLDSSTALEILKCIRTMA---DVLKTTT 172 (202)
T ss_pred hhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHH---HhCCCEE
Confidence 0000 1234456667788889999999999 899999999999999998873 222344
Q ss_pred EEEEeCCCCCch
Q 024249 155 VLMATNRIDILD 166 (270)
Q Consensus 155 vi~tt~~~~~l~ 166 (270)
+|+++|..+.+.
T Consensus 173 ii~~~h~~~~~~ 184 (202)
T cd03233 173 FVSLYQASDEIY 184 (202)
T ss_pred EEEEcCCHHHHH
Confidence 555556544444
No 319
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.30 E-value=8.4e-12 Score=106.23 Aligned_cols=113 Identities=23% Similarity=0.365 Sum_probs=78.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH---------------------------HHh-hhc-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL---------------------------VQK-YIG- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~---------------------------~~~-~~~- 88 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ ... ..+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 100 (256)
T TIGR03873 21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGR 100 (256)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcc
Confidence 356789999999999999999999999974 2233333322110 000 000
Q ss_pred --------------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 89 --------------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 89 --------------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+++.+-.+.+|...+|.++++|| |+++.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE-----------Pt~~LD 169 (256)
T TIGR03873 101 IPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDE-----------PTNHLD 169 (256)
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------ccccCC
Confidence 0111223344456677899999999 889999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
......+.+++..+. +.+.+||++||+++.+..
T Consensus 170 ~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~~ 202 (256)
T TIGR03873 170 VRAQLETLALVRELA----ATGVTVVAALHDLNLAAS 202 (256)
T ss_pred HHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHH
Confidence 999999999998873 236789999999887754
No 320
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.30 E-value=1.6e-11 Score=115.05 Aligned_cols=106 Identities=21% Similarity=0.287 Sum_probs=80.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|+.+.|+||+|||||||++.+++. +..+.+.+++.++..
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~ 435 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDA 435 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCC
Confidence 55789999999999999999999999984 345666665522110
Q ss_pred --------------------------hhhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 85 --------------------------KYIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 85 --------------------------~~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
..+| .++++.+-.+++|.-.+|.|+++|| ++++.|+.
T Consensus 436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE-----------~TSaLD~~ 504 (529)
T TIGR02868 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE-----------PTEHLDAG 504 (529)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHH
Confidence 0001 2345667788888889999999999 78899999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
....+.+.+..+ .++.++|+.||++
T Consensus 505 te~~I~~~l~~~-----~~~~TvIiItHrl 529 (529)
T TIGR02868 505 TESELLEDLLAA-----LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHh-----cCCCEEEEEecCC
Confidence 998888888765 2457899999974
No 321
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=7.2e-12 Score=110.16 Aligned_cols=114 Identities=23% Similarity=0.377 Sum_probs=82.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC------CeEEEEcchhHHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSGSELVQ----------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~------~~~i~i~~~~~~~----------------------------- 84 (270)
+|.+.+|..+.|.||||||||||+++|++... .+.+.+++.++..
T Consensus 27 sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~ 106 (326)
T PRK11022 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCY 106 (326)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcC
Confidence 46688999999999999999999999998542 3444444322100
Q ss_pred ---h---------------------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCc
Q 024249 85 ---K---------------------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 120 (270)
Q Consensus 85 ---~---------------------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~ 120 (270)
. ++. .++++.+-.+.+|...+|.+|++||
T Consensus 107 ~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE------- 179 (326)
T PRK11022 107 TVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE------- 179 (326)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC-------
Confidence 0 000 1122334555567778999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 121 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|...+..+.+++..+. .+.+.++|++||+.+.+..
T Consensus 180 ----Pts~LD~~~~~~il~lL~~l~---~~~g~til~iTHdl~~~~~ 219 (326)
T PRK11022 180 ----PTTALDVTIQAQIIELLLELQ---QKENMALVLITHDLALVAE 219 (326)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 899999999999999998873 3347899999999887654
No 322
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=8.6e-12 Score=104.82 Aligned_cols=114 Identities=23% Similarity=0.314 Sum_probs=80.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-----------------------------H-H-hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL-----------------------------V-Q-KY 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~-----------------------------~-~-~~ 86 (270)
+|.+.++..+.|.||+|+|||||+++|++. +..+.+.+++.++ . . ..
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 98 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKK 98 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHH
Confidence 356789999999999999999999999973 2233333322110 0 0 00
Q ss_pred ----------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 87 ----------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 87 ----------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
+. ...+..+..+.+|....|.++++|| |+++.|...+..
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE-----------Pt~gLD~~~~~~ 167 (235)
T cd03299 99 RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE-----------PFSALDVRTKEK 167 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC-----------CcccCCHHHHHH
Confidence 00 1223345556667778999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+++..+. .+.+.++|++||+++.+..
T Consensus 168 l~~~l~~~~---~~~~~tili~tH~~~~~~~ 195 (235)
T cd03299 168 LREELKKIR---KEFGVTVLHVTHDFEEAWA 195 (235)
T ss_pred HHHHHHHHH---HhcCCEEEEEecCHHHHHH
Confidence 999998873 2336789999999887654
No 323
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.2e-11 Score=104.94 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=79.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~en 102 (250)
T PRK14247 23 NLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFEN 102 (250)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHH
Confidence 4567899999999999999999999999863 2455544432110
Q ss_pred ---Hhhh---------------------c----------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 ---QKYI---------------------G----------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 ---~~~~---------------------~----------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
.... + ..+++.+-.+.+|....|.++++||
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE---------- 172 (250)
T PRK14247 103 VALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADE---------- 172 (250)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------
Confidence 0000 0 0011233444556677899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. . +.++|++||+++.+..
T Consensus 173 -P~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sH~~~~~~~ 210 (250)
T PRK14247 173 -PTANLDPENTAKIESLFLELK----K-DMTIVLVTHFPQQAAR 210 (250)
T ss_pred -CCccCCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHHHHH
Confidence 899999999999999998873 2 4789999999886654
No 324
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.30 E-value=1.9e-11 Score=101.71 Aligned_cols=110 Identities=24% Similarity=0.309 Sum_probs=78.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH--------------------------HH-------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL--------------------------VQ------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~--------------------------~~------- 84 (270)
+|.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++..+ ..
T Consensus 24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 103 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP 103 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCC
Confidence 3567899999999999999999999999742 333333332110 00
Q ss_pred ---------------------hhh-------------chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ---------------------KYI-------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ---------------------~~~-------------~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+ -...++.+-.+.+|....|.++++|| |+++.|
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDE-----------Pt~~LD 172 (220)
T cd03245 104 LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDE-----------PTSAMD 172 (220)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------ccccCC
Confidence 000 00112345556667778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
......+.+++..+. .+ .+||++||+.+.+
T Consensus 173 ~~~~~~l~~~l~~~~----~~-~tii~~sH~~~~~ 202 (220)
T cd03245 173 MNSEERLKERLRQLL----GD-KTLIIITHRPSLL 202 (220)
T ss_pred HHHHHHHHHHHHHhc----CC-CEEEEEeCCHHHH
Confidence 999999999998873 23 7899999998743
No 325
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.30 E-value=1.6e-11 Score=102.65 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=79.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHHH----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELVQ---------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~~---------------------------- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 99 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYD 99 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHH
Confidence 4567899999999999999999999999854 34544443321100
Q ss_pred ------hhh-------------------------------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 85 ------KYI-------------------------------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 85 ------~~~-------------------------------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
... . ..+++.+-.+.+|....|.++++|| |
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE-----------P 168 (227)
T cd03260 100 NVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE-----------P 168 (227)
T ss_pred HHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------C
Confidence 000 0 0011223334445667899999999 8
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++.|...+..+.+++..+. +. .+||++||+++.+..
T Consensus 169 t~~LD~~~~~~l~~~l~~~~----~~-~tii~~sH~~~~~~~ 205 (227)
T cd03260 169 TSALDPISTAKIEELIAELK----KE-YTIVIVTHNMQQAAR 205 (227)
T ss_pred CccCCHHHHHHHHHHHHHHh----hC-cEEEEEeccHHHHHH
Confidence 99999999999999998873 23 789999999876653
No 326
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=6.8e-12 Score=108.70 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|...+|.++++|| |+++.|......+.+++..+. ...+.+||++||+++.+..
T Consensus 158 rv~laral~~~p~lLlLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tiiiisH~~~~~~~ 216 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDE-----------PTGGLDPKGEEDFINLFERLN---KEYKKRIIMVTHNMDQVLR 216 (289)
T ss_pred HHHHHHHHHhCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHHH
Confidence 4444556778899999999 899999999999999998773 2346789999999886654
No 327
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.29 E-value=2.2e-11 Score=99.96 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcC
Q 024249 92 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLR 171 (270)
Q Consensus 92 ~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r 171 (270)
++.+.+|.+|.-.+|.+++||| |..+.|...+..+.+.+.++.. ..+...+|+.||..+++++.+.+
T Consensus 176 e~rrvLiaRALv~~P~LLiLDE-----------P~~GLDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDE-----------PAQGLDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecC-----------ccccCChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccce
Confidence 4557788899999999999999 8889999888888888888742 34578899999999999886543
No 328
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=8.4e-12 Score=109.42 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 93 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 93 ~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+-.+.+|...+|.+|++|| |+++.|......+.+++..+. ..+.+||++||+++.+..
T Consensus 182 kqRvaiAraL~~~p~iLLLDE-----------PtsgLD~~~~~~l~~~L~~l~----~~g~TiiivtHd~~~~~~ 241 (320)
T PRK13631 182 KRRVAIAGILAIQPEILIFDE-----------PTAGLDPKGEHEMMQLILDAK----ANNKTVFVITHTMEHVLE 241 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEEC-----------CccCCCHHHHHHHHHHHHHHH----HCCCEEEEEecCHHHHHH
Confidence 345555667778999999999 899999999999999998873 236789999999886654
No 329
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=1.1e-11 Score=106.80 Aligned_cols=113 Identities=18% Similarity=0.294 Sum_probs=79.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH--------h------------hh----------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------K------------YI---------- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------~------------~~---------- 87 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++..+.. . ..
T Consensus 30 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~ 109 (280)
T PRK13633 30 NLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAF 109 (280)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHh
Confidence 356788999999999999999999999974 223333333211100 0 00
Q ss_pred -----c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 88 -----G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 88 -----~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
+ ..+++.+-.+.+|...+|.++++|| |+++.|..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~gLD~~ 178 (280)
T PRK13633 110 GPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDE-----------PTAMLDPS 178 (280)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHH
Confidence 0 1112234444556778999999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.+..+.+++..+. .+.+.+||++||+++.+.
T Consensus 179 ~~~~l~~~l~~l~---~~~g~tillvtH~~~~~~ 209 (280)
T PRK13633 179 GRREVVNTIKELN---KKYGITIILITHYMEEAV 209 (280)
T ss_pred HHHHHHHHHHHHH---HhcCCEEEEEecChHHHh
Confidence 9999999998873 234789999999988764
No 330
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.29 E-value=2.2e-11 Score=100.38 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=79.9
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------H------hh
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------Q------KY 86 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------~------~~ 86 (270)
+.+.++..+.|.||+|+|||||+++|++. +..+.+.+++..+. . ..
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~ 108 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY 108 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCC
Confidence 56788999999999999999999999974 23344444332110 0 00
Q ss_pred --------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCC
Q 024249 87 --------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 150 (270)
Q Consensus 87 --------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 150 (270)
.. ...++.+-.+.+|...+|.++++|| |+++.|......+.+++..+.
T Consensus 109 ~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----- 172 (207)
T cd03369 109 SDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE-----------ATASIDYATDALIQKTIREEF----- 172 (207)
T ss_pred CHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHhc-----
Confidence 00 1123455666778888999999999 888999999999999988762
Q ss_pred CCeEEEEEeCCCCCch
Q 024249 151 NKIKVLMATNRIDILD 166 (270)
Q Consensus 151 ~~~~vi~tt~~~~~l~ 166 (270)
.+.++|++||+.+.+.
T Consensus 173 ~~~tiii~th~~~~~~ 188 (207)
T cd03369 173 TNSTILTIAHRLRTII 188 (207)
T ss_pred CCCEEEEEeCCHHHHh
Confidence 2678999999987664
No 331
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.29 E-value=1.2e-11 Score=105.79 Aligned_cols=59 Identities=27% Similarity=0.353 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|....|.++++|| |+++.|......+.+++..+. ...+.+||++||+++.+..
T Consensus 158 rv~laral~~~p~illLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~g~tiiivsH~~~~~~~ 216 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDE-----------AVSNLDMVLQAVILELLRKLQ---QAFGTAYLFITHDLRLVQS 216 (265)
T ss_pred HHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHHHH
Confidence 3444556778999999999 899999999999999998873 2336889999999887654
No 332
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=2.5e-10 Score=111.70 Aligned_cols=199 Identities=21% Similarity=0.324 Sum_probs=123.1
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCC---CCCc-eEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHH
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGI---AQPK-GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 84 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~---~~~~-~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~ 84 (270)
+.|.|++..++.+.+.+..... |+ ..|. .++|+||+|+|||.+++++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~--------gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARA--------GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhc--------CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 5789999999999998876421 12 2344 48999999999999999999876 45778888877643
Q ss_pred h------------hhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc----
Q 024249 85 K------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE---- 148 (270)
Q Consensus 85 ~------------~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---- 148 (270)
. |+|.... ..+....+...++||+|||+|+. ++.....+.++++.-.=..
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka------------~~~v~~~Llq~ld~g~l~d~~Gr 703 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA------------HPDVLELFYQVFDKGVMEDGEGR 703 (852)
T ss_pred hhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc------------CHHHHHHHHHHhhcceeecCCCc
Confidence 2 1221111 11223334566799999999763 3456667777776431000
Q ss_pred --CCCCeEEEEEeCCCCC-----------------------------chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 024249 149 --ASNKIKVLMATNRIDI-----------------------------LDQALLRPGRIDRKIEFPNPNEESRLDILKIHS 197 (270)
Q Consensus 149 --~~~~~~vi~tt~~~~~-----------------------------l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~ 197 (270)
.-.+..+|+|||-... ..|.++. |++ .+.|.+.+.++...|+...+
T Consensus 704 ~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 704 EIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKL 780 (852)
T ss_pred EEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHH
Confidence 0135678888874211 1122333 676 78899999999999987654
Q ss_pred ccC--------CC---CCCCCHHHHHHHcCC--CCHHHHHHHHHHHHHHHH
Q 024249 198 RRM--------NL---MRGIDLKKIAEKMNG--ASGAELKAVCTEAGMFAL 235 (270)
Q Consensus 198 ~~~--------~~---~~~~~~~~la~~~~g--~~~~dl~~l~~~a~~~a~ 235 (270)
... .. ..+.-.+.|++...+ |-++.+..+++.-...++
T Consensus 781 ~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~l 831 (852)
T TIGR03345 781 DRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPEL 831 (852)
T ss_pred HHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Confidence 432 11 111113456666432 457888887776554443
No 333
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=1.1e-11 Score=107.07 Aligned_cols=112 Identities=25% Similarity=0.342 Sum_probs=79.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CC---eEEEEcchhHHH------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DC---TFIRVSGSELVQ------------------------------ 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~---~~i~i~~~~~~~------------------------------ 84 (270)
+|.+.+|..+.|.||+|+|||||+++|++.. .. +.+.+++.++..
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl 106 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDV 106 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHH
Confidence 3567889999999999999999999999853 22 444443321100
Q ss_pred ----hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ----KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ----~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
...+ ...+..+-.+.+|...+|.++++|| |+++.|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDE-----------Pt~gLD 175 (282)
T PRK13640 107 AFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE-----------STSMLD 175 (282)
T ss_pred HhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CcccCC
Confidence 0000 1112234444557778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
......+.+++..+. ...+.+||++||+.+.+
T Consensus 176 ~~~~~~l~~~l~~l~---~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 176 PAGKEQILKLIRKLK---KKNNLTVISITHDIDEA 207 (282)
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 999999999998873 23467899999998766
No 334
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2e-10 Score=108.93 Aligned_cols=201 Identities=24% Similarity=0.331 Sum_probs=139.9
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeEEEE
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRV 77 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~i~i 77 (270)
...++=++|-++.++.+.+.|.-..+ .+-+|+|+||+|||.++.-+|.+. +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR~K-------------NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRRTK-------------NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhccCC-------------CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34567799999999999999987533 345899999999999999999642 4566777
Q ss_pred cchhHH--HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEE
Q 024249 78 SGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 155 (270)
Q Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v 155 (270)
+...+. .+|-|+.+++++.++.......+.||||||++.+.++....++ ..| ..+.+.-.| ....+.+
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~D--AaNiLKPaL-------ARGeL~~ 302 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMD--AANLLKPAL-------ARGELRC 302 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccc--hhhhhHHHH-------hcCCeEE
Confidence 766664 4688999999999999999888999999999999987542211 122 222333333 3445777
Q ss_pred EEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCC-----HHHHHHHcC-----CCCH
Q 024249 156 LMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID-----LKKIAEKMN-----GASG 220 (270)
Q Consensus 156 i~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-----~~~la~~~~-----g~~~ 220 (270)
|++|...+ .=|+++.| || ..+.+..|+.++-..||+-+..++.....+. +...+..++ -|-|
T Consensus 303 IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LP 379 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLP 379 (786)
T ss_pred EEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCC
Confidence 77776432 23568888 88 5689999999999999998766554433322 233333333 3344
Q ss_pred HHHHHHHHHHHHHH
Q 024249 221 AELKAVCTEAGMFA 234 (270)
Q Consensus 221 ~dl~~l~~~a~~~a 234 (270)
.=--.++.+|+...
T Consensus 380 DKAIDLiDeA~a~~ 393 (786)
T COG0542 380 DKAIDLLDEAGARV 393 (786)
T ss_pred chHHHHHHHHHHHH
Confidence 33446677776544
No 335
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.28 E-value=8.9e-11 Score=95.28 Aligned_cols=143 Identities=20% Similarity=0.316 Sum_probs=89.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCe------------------------EEEEcchhHHHhhhchhhHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCT------------------------FIRVSGSELVQKYIGEGSRMVRELFVM 100 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~------------------------~i~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (270)
.+..+||+||+|+|||++++.++....+. +..+.... . ......++.++..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 45679999999999999999999865432 11111100 0 0112345555555
Q ss_pred HHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcc
Q 024249 101 ARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRID 176 (270)
Q Consensus 101 a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~ 176 (270)
+.. ....|++|||+|.+. ......+...++. ......+|++|+++..+.+.+.+ |.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~i~s--r~- 147 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEE-----PPPNTLFILITPSPEKLLPTIRS--RC- 147 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcC-----CCCCeEEEEEECChHhChHHHHh--hc-
Confidence 433 346799999988752 2233344444432 23456677778888888888887 44
Q ss_pred eEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCC
Q 024249 177 RKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNG 217 (270)
Q Consensus 177 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g 217 (270)
..+.+++|+.++..++++.. .. .+..+..+++.+.|
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 47999999999988888775 11 22234455555544
No 336
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.28 E-value=1.2e-11 Score=104.39 Aligned_cols=112 Identities=20% Similarity=0.271 Sum_probs=79.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH----------------------------HH---h-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------VQ---K- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------~~---~- 85 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++ .. .
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 101 (242)
T TIGR03411 22 SLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELA 101 (242)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHh
Confidence 456789999999999999999999999974 2333333332110 00 0
Q ss_pred -hh-------------c--------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 86 -YI-------------G--------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 86 -~~-------------~--------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
.. . ..++..+-.+.+|....|.++++|| |
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDE-----------P 170 (242)
T TIGR03411 102 LPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDE-----------P 170 (242)
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC-----------C
Confidence 00 0 0112234444556778899999999 8
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++.|...+..+.+++..+. . +.+||++||+.+.+..
T Consensus 171 t~~LD~~~~~~l~~~l~~~~----~-~~tii~~sH~~~~~~~ 207 (242)
T TIGR03411 171 VAGMTDEETEKTAELLKSLA----G-KHSVVVVEHDMEFVRS 207 (242)
T ss_pred ccCCCHHHHHHHHHHHHHHh----c-CCEEEEEECCHHHHHH
Confidence 99999999999999999873 2 4689999999887654
No 337
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.28 E-value=2.3e-11 Score=101.23 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=79.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.++..+.|.||+|+|||||+++|++. +..+.+.+++.++..
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~ 103 (221)
T cd03244 24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE 103 (221)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCC
Confidence 356788999999999999999999999974 223333333211100
Q ss_pred ----------------hhh---------------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ----------------KYI---------------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ----------------~~~---------------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
... . ...++.+-.+.+|...+|.++++|| |+++.|.
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE-----------P~~~LD~ 172 (221)
T cd03244 104 YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDE-----------ATASVDP 172 (221)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------ccccCCH
Confidence 000 0 0123345556677788999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
..+..+.+++..+. + +.+||++||+++.+.
T Consensus 173 ~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~ 202 (221)
T cd03244 173 ETDALIQKTIREAF----K-DCTVLTIAHRLDTII 202 (221)
T ss_pred HHHHHHHHHHHHhc----C-CCEEEEEeCCHHHHh
Confidence 99999999998763 2 368999999987664
No 338
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.28 E-value=1e-11 Score=104.47 Aligned_cols=114 Identities=25% Similarity=0.364 Sum_probs=78.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH-------------------------H---H--hhh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-------------------------V---Q--KYI 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~-------------------------~---~--~~~ 87 (270)
++.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++.++ . . ...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~ 99 (237)
T TIGR00968 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEI 99 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHh
Confidence 3567899999999999999999999999742 233333222110 0 0 000
Q ss_pred -c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 88 -G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 88 -~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
+ ..++..+-.+.++....|.++++|| |+++.|......
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE-----------P~~~LD~~~~~~ 168 (237)
T TIGR00968 100 RKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE-----------PFGALDAKVRKE 168 (237)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHHH
Confidence 0 0112223444456677899999999 889999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+++..+. .+.+.+||++||+++.+..
T Consensus 169 ~~~~l~~~~---~~~~~tvli~sH~~~~~~~ 196 (237)
T TIGR00968 169 LRSWLRKLH---DEVHVTTVFVTHDQEEAME 196 (237)
T ss_pred HHHHHHHHH---HhcCCEEEEEeCCHHHHHh
Confidence 999998873 2236889999999887654
No 339
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.28 E-value=1.5e-11 Score=102.99 Aligned_cols=114 Identities=23% Similarity=0.357 Sum_probs=80.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc------CCeEEEEcchhHH--------------------H---------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGSELV--------------------Q--------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~------~~~~i~i~~~~~~--------------------~--------- 84 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++. .
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~ 85 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHA 85 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHH
Confidence 4567899999999999999999999999853 2444443321100 0
Q ss_pred ----hhhc---------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCC
Q 024249 85 ----KYIG---------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG 127 (270)
Q Consensus 85 ----~~~~---------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~ 127 (270)
...+ ..+++.+-.+.+|...+|.|+++|| |++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE-----------Pt~ 154 (230)
T TIGR02770 86 IETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE-----------PTT 154 (230)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC-----------Ccc
Confidence 0000 0112233445556678899999999 889
Q ss_pred CCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 128 NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 128 ~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.|......+.+++..+. .+.+.+||++||+++.+..
T Consensus 155 ~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~~ 191 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELR---QLFGTGILLITHDLGVVAR 191 (230)
T ss_pred ccCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 999999999999998873 2346789999999887654
No 340
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.28 E-value=1.2e-10 Score=107.52 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=59.2
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
.|||++.|.+.++|+-..+.++++..++...+. +-.+...++|+||+||||||+++++|++++..+.+.
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 599999999999999999999999999986432 233456788999999999999999999988777765
No 341
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.28 E-value=2.5e-11 Score=100.52 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=73.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEE-EcchhH-----------------H---Hhhhc--------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIR-VSGSEL-----------------V---QKYIG-------- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~-i~~~~~-----------------~---~~~~~-------- 88 (270)
+|.+.++..+.|.||||+|||||++.|++. +..+.+. +++..+ . ....+
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 86 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSH 86 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHH
Confidence 456789999999999999999999999973 2333332 221100 0 00000
Q ss_pred -------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcC
Q 024249 89 -------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA 149 (270)
Q Consensus 89 -------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 149 (270)
....+.+-.+.+|....|.++++|| |.++.|+.....+.+.+...- .
T Consensus 87 ~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDE-----------P~~~lD~~~~~~~~~~l~~~~---~ 152 (213)
T PRK15177 87 FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADG-----------KLYTGDNATQLRMQAALACQL---Q 152 (213)
T ss_pred HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECC-----------CCccCCHHHHHHHHHHHHHHh---h
Confidence 1112234455667778999999999 777888888888887664321 1
Q ss_pred CCCeEEEEEeCCCCCchh
Q 024249 150 SNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 150 ~~~~~vi~tt~~~~~l~~ 167 (270)
+.++|++||++..+..
T Consensus 153 --~~~ii~vsH~~~~~~~ 168 (213)
T PRK15177 153 --QKGLIVLTHNPRLIKE 168 (213)
T ss_pred --CCcEEEEECCHHHHHH
Confidence 1348899999887654
No 342
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.7e-11 Score=104.23 Aligned_cols=112 Identities=22% Similarity=0.358 Sum_probs=78.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 105 (253)
T PRK14242 26 SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFE 105 (253)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHH
Confidence 3567899999999999999999999999742 3454444331110
Q ss_pred ----H-hhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 ----Q-KYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 ----~-~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ...+ ..+++.+-.+.+|....|.++++||
T Consensus 106 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDE---------- 175 (253)
T PRK14242 106 NVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE---------- 175 (253)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------
Confidence 0 0000 0012223344556667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. . +.+||++||+.+.+..
T Consensus 176 -Pt~~LD~~~~~~l~~~l~~~~----~-~~tvii~tH~~~~~~~ 213 (253)
T PRK14242 176 -PASALDPIATQKIEELIHELK----A-RYTIIIVTHNMQQAAR 213 (253)
T ss_pred -CcccCCHHHHHHHHHHHHHHh----c-CCeEEEEEecHHHHHH
Confidence 899999999999999998873 2 4689999999887654
No 343
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.28 E-value=8.3e-12 Score=116.39 Aligned_cols=113 Identities=14% Similarity=0.232 Sum_probs=82.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH----------------------------Hh----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------QK---- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~----------------------------~~---- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++. ..
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 110 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFG 110 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcc
Confidence 4567889999999999999999999999842 3344444331100 00
Q ss_pred --------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHH
Q 024249 86 --------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 137 (270)
Q Consensus 86 --------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l 137 (270)
.++ ..+++.+..+.+|....|.++++|| |+++.|+.....+
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE-----------Pt~~LD~~~~~~l 179 (510)
T PRK15439 111 LPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE-----------PTASLTPAETERL 179 (510)
T ss_pred cccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CCCCCCHHHHHHH
Confidence 000 1223445666777888999999999 8999999999999
Q ss_pred HHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 138 LELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 138 ~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+++..+. ..+.+||++||+++.+..
T Consensus 180 ~~~l~~~~----~~g~tiiivtHd~~~~~~ 205 (510)
T PRK15439 180 FSRIRELL----AQGVGIVFISHKLPEIRQ 205 (510)
T ss_pred HHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 99998873 236789999999887654
No 344
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=1e-11 Score=109.23 Aligned_cols=114 Identities=21% Similarity=0.338 Sum_probs=81.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.+|..+.|.|+||||||||+++|++.. ..+.+.+++.++.
T Consensus 35 sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~ 114 (327)
T PRK11308 35 SFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQI 114 (327)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHH
Confidence 4567899999999999999999999999732 2333333321110
Q ss_pred -H---------------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCC
Q 024249 84 -Q---------------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG 127 (270)
Q Consensus 84 -~---------------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~ 127 (270)
. .++. .++++.+..+++|...+|.+|++|| |++
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDE-----------Pts 183 (327)
T PRK11308 115 LEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE-----------PVS 183 (327)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CCc
Confidence 0 0000 1223345556667788999999999 899
Q ss_pred CCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 128 NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 128 ~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.|...+..+.++|..+. ...+.++|++||+.+.+..
T Consensus 184 ~LD~~~~~~i~~lL~~l~---~~~g~til~iTHdl~~~~~ 220 (327)
T PRK11308 184 ALDVSVQAQVLNLMMDLQ---QELGLSYVFISHDLSVVEH 220 (327)
T ss_pred cCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 999999999999998873 3347899999999887654
No 345
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.28 E-value=2e-11 Score=102.00 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=78.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEEEEcchhH----------------------------H--H
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSEL----------------------------V--Q 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~i~~~~~----------------------------~--~ 84 (270)
+|.+.+++.+.|.||||+|||||++.|++.. ..+.+.+++.++ . .
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 106 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTA 106 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHH
Confidence 4567899999999999999999999999853 344444332110 0 0
Q ss_pred hhhc----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 KYIG----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ~~~~----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.... ..++..+-.+.++....|.++++|| |+++.|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDE-----------P~~gLD 175 (226)
T cd03234 107 ILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDE-----------PTSGLD 175 (226)
T ss_pred HhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeC-----------CCcCCC
Confidence 0000 0111223344556677899999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC-Cchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRID-ILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~-~l~~ 167 (270)
...+..+.+++.++. ..+.++|++||+.. .+..
T Consensus 176 ~~~~~~~~~~l~~~~----~~~~tiii~sh~~~~~~~~ 209 (226)
T cd03234 176 SFTALNLVSTLSQLA----RRNRIVILTIHQPRSDLFR 209 (226)
T ss_pred HHHHHHHHHHHHHHH----HCCCEEEEEecCCCHHHHH
Confidence 999999999998873 23678999999973 5543
No 346
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.28 E-value=2.8e-11 Score=99.46 Aligned_cols=113 Identities=21% Similarity=0.296 Sum_probs=77.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcc-------h------h----H-----------HH-----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSG-------S------E----L-----------VQ----- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~-------~------~----~-----------~~----- 84 (270)
+|.+.+|..+.|.||+|+|||||++.|++. +..+.+.+++ . . + ..
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~ 104 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC 104 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHc
Confidence 355789999999999999999999999984 2233222221 0 0 0 00
Q ss_pred ---hhh---------------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH-HHHh
Q 024249 85 ---KYI---------------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE-LLNQ 143 (270)
Q Consensus 85 ---~~~---------------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~-~l~~ 143 (270)
.+. . ...++.+-.+.+|...+|.++++|| |+++.|......+.+ ++..
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDE-----------P~~~LD~~~~~~l~~~ll~~ 173 (204)
T cd03250 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD-----------PLSAVDAHVGRHIFENCILG 173 (204)
T ss_pred CcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHH
Confidence 000 0 1223455667778889999999999 888999988877776 4554
Q ss_pred hcCCcCCCCeEEEEEeCCCCCchh
Q 024249 144 LDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 144 l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+ ...+.+||++||+++.+..
T Consensus 174 ~----~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 174 L----LLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred h----ccCCCEEEEEeCCHHHHhh
Confidence 4 2236899999999776653
No 347
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.27 E-value=3.3e-11 Score=100.67 Aligned_cols=110 Identities=19% Similarity=0.355 Sum_probs=77.7
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+.+|..+.|.||+|+|||||+++|++.. ..+.+.+++..+..
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~ 114 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQS 114 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCC
Confidence 457889999999999999999999999842 33444433321100
Q ss_pred -------hh------------h--c------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 -------KY------------I--G------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 -------~~------------~--~------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.. . + ...++.+-.+.++...+|.++++|| |+++.|.
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE-----------Pt~~LD~ 183 (226)
T cd03248 115 CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDE-----------ATSALDA 183 (226)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCH
Confidence 00 0 0 0112233444556678899999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.....+.+++..+. + +.++|++||+++.+.
T Consensus 184 ~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~ 213 (226)
T cd03248 184 ESEQQVQQALYDWP----E-RRTVLVIAHRLSTVE 213 (226)
T ss_pred HHHHHHHHHHHHHc----C-CCEEEEEECCHHHHH
Confidence 99999999998873 2 378999999987663
No 348
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.27 E-value=1.8e-11 Score=103.71 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=80.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh----cCCeEEEEcchhHH--------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSGSELV-------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~----~~~~~i~i~~~~~~-------------------------------- 83 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++.
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 100 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQ 100 (248)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHH
Confidence 356789999999999999999999999986 33444443331110
Q ss_pred ---Hh---h--------------h---------------------chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCccc
Q 024249 84 ---QK---Y--------------I---------------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 122 (270)
Q Consensus 84 ---~~---~--------------~---------------------~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~ 122 (270)
.. + . -..+++.+-.+.+|....|.++++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDE--------- 171 (248)
T PRK09580 101 TALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE--------- 171 (248)
T ss_pred HhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeC---------
Confidence 00 0 0 00112234455567778899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 123 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. +.+.+||++||+.+.+..
T Consensus 172 --Pt~~LD~~~~~~l~~~l~~l~----~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 172 --SDSGLDIDALKIVADGVNSLR----DGKRSFIIVTHYQRILDY 210 (248)
T ss_pred --CCccCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHh
Confidence 899999999999999988873 236789999999776543
No 349
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.27 E-value=2.5e-11 Score=115.01 Aligned_cols=111 Identities=26% Similarity=0.408 Sum_probs=82.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
++.+++|+.++|.||+|+|||||++.|++. +..+.+.+++.++..
T Consensus 363 ~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~ 442 (582)
T PRK11176 363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART 442 (582)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCC
Confidence 345688999999999999999999999984 345666665533200
Q ss_pred ----------------------hh-------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 85 ----------------------KY-------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 85 ----------------------~~-------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
.. .+ .++++.+-.+++|...+|.|+++|| |+++.
T Consensus 443 ~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDE-----------ptsaL 511 (582)
T PRK11176 443 EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE-----------ATSAL 511 (582)
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEEC-----------ccccC
Confidence 00 00 2345567777788889999999999 88999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
|+.....+.+.+..+. .+.++|+.||+++.+.
T Consensus 512 D~~t~~~i~~~l~~~~-----~~~tvI~VtHr~~~~~ 543 (582)
T PRK11176 512 DTESERAIQAALDELQ-----KNRTSLVIAHRLSTIE 543 (582)
T ss_pred CHHHHHHHHHHHHHHh-----CCCEEEEEecchHHHH
Confidence 9999888888887762 3578999999985543
No 350
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.27 E-value=1.3e-11 Score=104.56 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=77.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCeEEEEcchhH---------------------------HHh-----h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSEL---------------------------VQK-----Y 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~i~~~~~---------------------------~~~-----~ 86 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ ... .
T Consensus 16 sl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~ 95 (248)
T PRK03695 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQP 95 (248)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCc
Confidence 4568899999999999999999999999742 123333322110 000 0
Q ss_pred hc------------------------------hhhHHHHHHHHHHHhc-------CCeEEEEcCCCcccCcccCCCCCCC
Q 024249 87 IG------------------------------EGSRMVRELFVMAREH-------APSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 87 ~~------------------------------~~~~~~~~~~~~a~~~-------~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
.+ ..+++.+-.+.+|... .|.++++|| |+++.
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDE-----------Pt~~L 164 (248)
T PRK03695 96 DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDE-----------PMNSL 164 (248)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcC-----------CcccC
Confidence 00 1112233444445554 569999999 89999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|...+..+.+++..+. +.+.+||++||+.+.+..
T Consensus 165 D~~~~~~l~~~L~~~~----~~~~tvi~~sH~~~~~~~ 198 (248)
T PRK03695 165 DVAQQAALDRLLSELC----QQGIAVVMSSHDLNHTLR 198 (248)
T ss_pred CHHHHHHHHHHHHHHH----hCCCEEEEEecCHHHHHH
Confidence 9999999999998873 236789999999886654
No 351
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.27 E-value=2.2e-10 Score=112.59 Aligned_cols=203 Identities=23% Similarity=0.324 Sum_probs=126.4
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCC----CCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHH
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGI----AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 84 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~----~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~ 84 (270)
+.|.|.+..++.+.+.+..... |+ .+...++|+||+|+|||++|++||... +.++++++++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~--------gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRA--------GLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhc--------cCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 5789999999999998876321 11 234568899999999999999999864 45788888876532
Q ss_pred h-----hhch----hhH-HHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc---CC---c
Q 024249 85 K-----YIGE----GSR-MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD---GF---E 148 (270)
Q Consensus 85 ~-----~~~~----~~~-~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~---~~---~ 148 (270)
. ..|. ... ....+.........+||+|||+|+. ++.....+.++++.-. +. .
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka------------~~~v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA------------HPDVFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC------------CHHHHHHHHHHHhcCceecCCCeEE
Confidence 1 1111 000 0112222233444579999998863 4566777777775421 00 0
Q ss_pred CCCCeEEEEEeCCCCC-------------------------chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccC---
Q 024249 149 ASNKIKVLMATNRIDI-------------------------LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM--- 200 (270)
Q Consensus 149 ~~~~~~vi~tt~~~~~-------------------------l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~--- 200 (270)
.-.+.+||+|||.-.. ..+.+. +|++..+.|.+++.++..+|+.......
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~ 782 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQLGRLRKR 782 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence 0124568888886221 011233 3789999999999999999987654321
Q ss_pred ----CCCCCCC---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHH
Q 024249 201 ----NLMRGID---LKKIAEKM--NGASGAELKAVCTEAGMFALR 236 (270)
Q Consensus 201 ----~~~~~~~---~~~la~~~--~g~~~~dl~~l~~~a~~~a~~ 236 (270)
...-.++ .+.|++.. ..+..+.|+.++++.....+.
T Consensus 783 l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 783 LAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLA 827 (852)
T ss_pred HHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHH
Confidence 1111222 34455542 246678898888877765543
No 352
>PHA02244 ATPase-like protein
Probab=99.27 E-value=4.8e-10 Score=98.36 Aligned_cols=127 Identities=24% Similarity=0.286 Sum_probs=80.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhh---chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI---GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 121 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~---~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~ 121 (270)
.+..++|+||+|||||++++++|...+.+++.++...-..... .........-|..|. ....+|+|||++.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~--- 193 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASI--- 193 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCC---
Confidence 4567999999999999999999999999999887531111111 111111111223333 345799999988642
Q ss_pred cCCCCCCCChHHHHHHHHHHHhh-----cC-CcCCCCeEEEEEeCCC-----------CCchhhhcCCCCcceEEEeCCC
Q 024249 122 MESGSGNGDSEVQRTMLELLNQL-----DG-FEASNKIKVLMATNRI-----------DILDQALLRPGRIDRKIEFPNP 184 (270)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~l~~l-----~~-~~~~~~~~vi~tt~~~-----------~~l~~~l~r~~r~~~~i~~~~p 184 (270)
+.....+..++..- .+ .....+..+|+|+|.. ..++++++. ||- .+++..|
T Consensus 194 ---------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 194 ---------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred ---------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 33444555555421 11 1123567899999973 466778887 884 5888888
Q ss_pred CHH
Q 024249 185 NEE 187 (270)
Q Consensus 185 ~~~ 187 (270)
+..
T Consensus 262 ~~~ 264 (383)
T PHA02244 262 EKI 264 (383)
T ss_pred cHH
Confidence 743
No 353
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.27 E-value=1.1e-11 Score=109.17 Aligned_cols=114 Identities=21% Similarity=0.309 Sum_probs=81.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------------~~ 85 (270)
+|.+.++..+.|.|+||||||||+++|++. +..+.+.+++.++. ..
T Consensus 41 sl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~ 120 (331)
T PRK15079 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEI 120 (331)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHH
Confidence 456789999999999999999999999973 22333333322110 00
Q ss_pred -------h------------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCC
Q 024249 86 -------Y------------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126 (270)
Q Consensus 86 -------~------------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~ 126 (270)
. +. .++++.+..+++|...+|.+|++|| |+
T Consensus 121 i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE-----------Pt 189 (331)
T PRK15079 121 IAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE-----------PV 189 (331)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CC
Confidence 0 00 1122334555567778999999999 89
Q ss_pred CCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 127 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 127 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
++.|...+..+.+++..+. ...+.++|++||+++.+..
T Consensus 190 s~LD~~~~~~i~~lL~~l~---~~~~~til~iTHdl~~~~~ 227 (331)
T PRK15079 190 SALDVSIQAQVVNLLQQLQ---REMGLSLIFIAHDLAVVKH 227 (331)
T ss_pred ccCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 9999999999999998873 2347899999999887654
No 354
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.27 E-value=1.4e-11 Score=109.98 Aligned_cols=113 Identities=22% Similarity=0.272 Sum_probs=81.8
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcch----hH--------HH---hhh----------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGS----EL--------VQ---KYI---------------- 87 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~----~~--------~~---~~~---------------- 87 (270)
|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++. ++ .. ..+
T Consensus 45 f~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~ 124 (382)
T TIGR03415 45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVE 124 (382)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHH
Confidence 45788999999999999999999999984 34455555431 10 00 000
Q ss_pred ----------c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCC
Q 024249 88 ----------G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG 127 (270)
Q Consensus 88 ----------~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~ 127 (270)
+ ...++.+-.+.+|....|.|+++|| |++
T Consensus 125 eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE-----------Pts 193 (382)
T TIGR03415 125 ENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE-----------PFS 193 (382)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCc
Confidence 0 1222334555667788999999999 899
Q ss_pred CCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 128 NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 128 ~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.|+..+..+.+.+..+. ...+.++|++||+.+.+..
T Consensus 194 ~LD~~~r~~l~~~L~~l~---~~~~~TII~iTHdl~e~~~ 230 (382)
T TIGR03415 194 ALDPLIRTQLQDELLELQ---AKLNKTIIFVSHDLDEALK 230 (382)
T ss_pred cCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 999999999999888873 3347899999999887643
No 355
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.27 E-value=1.3e-11 Score=114.80 Aligned_cols=113 Identities=16% Similarity=0.271 Sum_probs=81.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH----------------------------HHh----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------VQK---- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------~~~---- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ ...
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 103 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLG 103 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhc
Confidence 456788999999999999999999999984 2334444432110 000
Q ss_pred --h--------------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 86 --Y--------------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 86 --~--------------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
. ++ ..+++.+..+.+|....|.++++|| |+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE-----------Pt~~L 172 (501)
T PRK10762 104 REFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDE-----------PTDAL 172 (501)
T ss_pred cccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcCCC
Confidence 0 00 1122334455567778999999999 89999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+..+..+.+++..+. +.+.+||++||+.+.+..
T Consensus 173 D~~~~~~l~~~l~~l~----~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 173 TDTETESLFRVIRELK----SQGRGIVYISHRLKEIFE 206 (501)
T ss_pred CHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 9999999999998873 236789999999887654
No 356
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1.6e-11 Score=105.67 Aligned_cols=113 Identities=22% Similarity=0.319 Sum_probs=79.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH-----------------------H-----H-----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-----------------------V-----Q----- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~-----------------------~-----~----- 84 (270)
+|.+.+|..+.|.||+|+|||||+++|++.. ..+.+.+++.++ . .
T Consensus 27 ~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~ 106 (277)
T PRK13642 27 SFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG 106 (277)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhh
Confidence 3567899999999999999999999999732 223333222110 0 0
Q ss_pred -hhhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 85 -KYIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 85 -~~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
...+ ..+++.+-.+.+|...+|.++++|| |+++.|...
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDE-----------Pt~~LD~~~ 175 (277)
T PRK13642 107 MENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE-----------STSMLDPTG 175 (277)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHH
Confidence 0000 1112334455567778999999999 889999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
...+.+++..+. ...+.+||++||+.+.+.
T Consensus 176 ~~~l~~~l~~l~---~~~g~tiil~sH~~~~~~ 205 (277)
T PRK13642 176 RQEIMRVIHEIK---EKYQLTVLSITHDLDEAA 205 (277)
T ss_pred HHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 999999998773 234788999999988764
No 357
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.26 E-value=1.2e-11 Score=112.83 Aligned_cols=114 Identities=25% Similarity=0.378 Sum_probs=89.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------------- 82 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------------- 82 (270)
+|.+.+|..+.|+|+|||||||++|+|++- +..+.+.+++.++
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i 390 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL 390 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHH
Confidence 456889999999999999999999999983 4455555544320
Q ss_pred --------------------------------HHhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCC
Q 024249 83 --------------------------------VQKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 128 (270)
Q Consensus 83 --------------------------------~~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~ 128 (270)
..+|+. .++++.+-.+++|....|.+|++|| |.+.
T Consensus 391 ~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DE-----------p~Sa 459 (539)
T COG1123 391 AEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDE-----------PVSA 459 (539)
T ss_pred HhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecC-----------Cccc
Confidence 111222 2456678888889999999999999 8899
Q ss_pred CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.|...+..+.+++..+. ..-+.+.+++||+.+.+..
T Consensus 460 LDvsvqa~VlnLl~~lq---~e~g~t~lfISHDl~vV~~ 495 (539)
T COG1123 460 LDVSVQAQVLNLLKDLQ---EELGLTYLFISHDLAVVRY 495 (539)
T ss_pred cCHHHHHHHHHHHHHHH---HHhCCEEEEEeCCHHHHHh
Confidence 99999999999998884 4558999999999887655
No 358
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.2e-11 Score=103.05 Aligned_cols=112 Identities=21% Similarity=0.327 Sum_probs=79.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEEEEcchhHH-------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELV------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~i~~~~~~------------------------------- 83 (270)
+|.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++.++.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~ 101 (246)
T PRK14269 22 NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISY 101 (246)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhh
Confidence 3567899999999999999999999999853 3444444332110
Q ss_pred H-hhh------c------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCC
Q 024249 84 Q-KYI------G------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126 (270)
Q Consensus 84 ~-~~~------~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~ 126 (270)
. ... . ...++.+..+.+|....|.++++|| |+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE-----------P~ 170 (246)
T PRK14269 102 APKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDE-----------PT 170 (246)
T ss_pred HHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------Cc
Confidence 0 000 0 1122234445556778899999999 88
Q ss_pred CCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 127 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 127 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
++.|......+.+++..+. . +.++|++||+.+.+..
T Consensus 171 ~~LD~~~~~~l~~~l~~~~----~-~~tiii~tH~~~~~~~ 206 (246)
T PRK14269 171 SALDPISSGVIEELLKELS----H-NLSMIMVTHNMQQGKR 206 (246)
T ss_pred ccCCHHHHHHHHHHHHHHh----C-CCEEEEEecCHHHHHh
Confidence 9999999999999998873 2 5789999999887654
No 359
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.26 E-value=2.2e-11 Score=103.42 Aligned_cols=59 Identities=27% Similarity=0.398 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|...+|.++++|| |+++.|......+.+++..+. .+.+.+||++||+.+.+..
T Consensus 156 rv~laral~~~p~vlllDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDE-----------PTGGLDVSVQARLLDLLRGLV---RDLGLAVIIVTHDLGVARL 214 (253)
T ss_pred HHHHHHHHhcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 4445556778999999999 899999999999999988762 2346889999999887654
No 360
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.26 E-value=2.8e-11 Score=114.86 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=84.2
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|..++|.|++|||||||++.+++. +..+.+.+++.++..
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~ 441 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDI 441 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCC
Confidence 45789999999999999999999999984 445666666543210
Q ss_pred -------------------h-------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 85 -------------------K-------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 85 -------------------~-------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
. ..+ .++++.+-.+++|...+|.|+++|| |+++.|..
T Consensus 442 ~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDE-----------pts~LD~~ 510 (592)
T PRK10790 442 SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE-----------ATANIDSG 510 (592)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeC-----------CcccCCHH
Confidence 0 000 2345667778888889999999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
..+.+.+.+..+. .+.++|+.||++..+.
T Consensus 511 t~~~i~~~l~~~~-----~~~tvIivtHr~~~l~ 539 (592)
T PRK10790 511 TEQAIQQALAAVR-----EHTTLVVIAHRLSTIV 539 (592)
T ss_pred HHHHHHHHHHHHh-----CCCEEEEEecchHHHH
Confidence 9988888887762 2478999999986554
No 361
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.4e-11 Score=103.27 Aligned_cols=112 Identities=21% Similarity=0.327 Sum_probs=78.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-------CeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-------~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||+|+|||||+++|++... .+.+.+++.++.
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 106 (254)
T PRK14273 27 NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYD 106 (254)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHH
Confidence 35678999999999999999999999998532 455554332110
Q ss_pred ----H-hhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 ----Q-KYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 ----~-~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ...+ ..+++.+-.+.++...+|.++++||
T Consensus 107 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE---------- 176 (254)
T PRK14273 107 NISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE---------- 176 (254)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------
Confidence 0 0000 0011223334445667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. . +.+||++||+++.+..
T Consensus 177 -Pt~~LD~~~~~~l~~~l~~~~----~-~~tvii~sH~~~~~~~ 214 (254)
T PRK14273 177 -PTSALDPISTGKIEELIINLK----E-SYTIIIVTHNMQQAGR 214 (254)
T ss_pred -CCcccCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHHHHH
Confidence 899999999999999998873 2 4789999999887654
No 362
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.26 E-value=3.3e-11 Score=100.53 Aligned_cols=113 Identities=22% Similarity=0.312 Sum_probs=78.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEc--ch--hHH-----------Hh-----------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVS--GS--ELV-----------QK----------------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~--~~--~~~-----------~~----------------- 85 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.++ +. ++. ..
T Consensus 28 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 107 (224)
T TIGR02324 28 SLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSA 107 (224)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccH
Confidence 4567899999999999999999999999842 33444443 10 100 00
Q ss_pred ---------hhc-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 86 ---------YIG-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 86 ---------~~~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
..+ ...++.+-.+.+|....|.++++|| |
T Consensus 108 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE-----------P 176 (224)
T TIGR02324 108 LEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDE-----------P 176 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------C
Confidence 000 0111223334446667899999999 8
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++.|......+.+++..+. ..+.+||++||+.+.+..
T Consensus 177 t~~LD~~~~~~l~~~l~~~~----~~g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 177 TASLDAANRQVVVELIAEAK----ARGAALIGIFHDEEVREL 214 (224)
T ss_pred cccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHH
Confidence 99999999999999998873 236789999999665543
No 363
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.26 E-value=2.2e-11 Score=103.72 Aligned_cols=59 Identities=27% Similarity=0.387 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|....|.++++|| |+++.|......+.+++..+. ...+.+||++||+.+.+..
T Consensus 159 rl~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDE-----------PTGGLDVSVQARLLDLLRGLV---RELGLAVVIVTHDLAVARL 217 (258)
T ss_pred HHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHHHH
Confidence 4444556678899999999 889999999999999988763 2336899999999887764
No 364
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.26 E-value=1.7e-11 Score=107.95 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=82.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-----CeEEEEcchhHHH------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSELVQ------------------------------ 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-----~~~i~i~~~~~~~------------------------------ 84 (270)
+|.+.+|..+.|.|+||||||||+++|++... .+.+.+++.++..
T Consensus 36 sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~ 115 (330)
T PRK09473 36 NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMR 115 (330)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCC
Confidence 45688999999999999999999999998432 4545444322100
Q ss_pred --h---------------------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcc
Q 024249 85 --K---------------------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 121 (270)
Q Consensus 85 --~---------------------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~ 121 (270)
. ++. .++++.+..+++|...+|.+|++||
T Consensus 116 v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE-------- 187 (330)
T PRK09473 116 VGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE-------- 187 (330)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC--------
Confidence 0 000 1122334555667778999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 122 MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|...+..+.+++..+. .+.+.++|++||+.+.+..
T Consensus 188 ---Pts~LD~~~~~~i~~lL~~l~---~~~g~til~iTHdl~~~~~ 227 (330)
T PRK09473 188 ---PTTALDVTVQAQIMTLLNELK---REFNTAIIMITHDLGVVAG 227 (330)
T ss_pred ---CCccCCHHHHHHHHHHHHHHH---HHcCCEEEEEECCHHHHHH
Confidence 899999999999999998873 3347899999999886653
No 365
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.3e-11 Score=104.21 Aligned_cols=112 Identities=21% Similarity=0.368 Sum_probs=78.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh-------cCCeEEEEcchhHH----------------------------H
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSELV----------------------------Q 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~-------~~~~~i~i~~~~~~----------------------------~ 84 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. .
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 120 (268)
T PRK14248 41 SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYN 120 (268)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHH
Confidence 356789999999999999999999999984 23454444321110 0
Q ss_pred ------hhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 85 ------KYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 85 ------~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
...+ ..+++.+-.+.+|....|.++++||
T Consensus 121 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE---------- 190 (268)
T PRK14248 121 NITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDE---------- 190 (268)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcC----------
Confidence 0000 0011223334446667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. . +.+||++||+++.+..
T Consensus 191 -Pt~~LD~~~~~~l~~~l~~~~----~-~~tiii~tH~~~~~~~ 228 (268)
T PRK14248 191 -PASALDPISNAKIEELITELK----E-EYSIIIVTHNMQQALR 228 (268)
T ss_pred -CCcccCHHHHHHHHHHHHHHh----c-CCEEEEEEeCHHHHHH
Confidence 899999999999999998873 2 3689999999876654
No 366
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.26 E-value=4e-10 Score=93.90 Aligned_cols=217 Identities=17% Similarity=0.260 Sum_probs=136.9
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCeE-----
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTF----- 74 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~----- 74 (270)
+||++++|.+++.+.+.++....+......- .-.++++|||+|+||-|.+-++.+++ |.++
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~-------------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki 68 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTG-------------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI 68 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccC-------------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee
Confidence 6999999999999999999888888766521 12458999999999999999998753 2121
Q ss_pred -----------------------EEEcchhHHHhhhchhhHHHHHHHHHHHhc---------CCeEEEEcCCCcccCccc
Q 024249 75 -----------------------IRVSGSELVQKYIGEGSRMVRELFVMAREH---------APSIIFMDEIDSIGSARM 122 (270)
Q Consensus 75 -----------------------i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~---------~p~il~lDeid~l~~~~~ 122 (270)
+++++++... .-.-.+++++....+. .-.+++|.|+|.|-.
T Consensus 69 ~~~t~~tpS~kklEistvsS~yHlEitPSDaG~----~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~--- 141 (351)
T KOG2035|consen 69 ETRTFTTPSKKKLEISTVSSNYHLEITPSDAGN----YDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR--- 141 (351)
T ss_pred eeEEEecCCCceEEEEEecccceEEeChhhcCc----ccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH---
Confidence 1122222110 0111234444433222 225899999887632
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC
Q 024249 123 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL 202 (270)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~ 202 (270)
..+..+..-++.. .+...+|+++|+...+-+.++++.. .+.+|.|+.++-..++...+.+...
T Consensus 142 ---------dAQ~aLRRTMEkY-----s~~~RlIl~cns~SriIepIrSRCl---~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 142 ---------DAQHALRRTMEKY-----SSNCRLILVCNSTSRIIEPIRSRCL---FIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred ---------HHHHHHHHHHHHH-----hcCceEEEEecCcccchhHHhhhee---EEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 2344555555554 2457799999999998888887443 3889999999999999988776554
Q ss_pred -CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHH---HHHhcCCCCCHHHHHHHHHHHhh
Q 024249 203 -MRGIDLKKIAEKMNGASGAELKAVCTEAGMF---ALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 203 -~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~---a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
.+..-+..+|+.+.|---+.| ++-+|... +.......+-.-|.+..++++..
T Consensus 205 ~lp~~~l~rIa~kS~~nLRrAl--lmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 205 QLPKELLKRIAEKSNRNLRRAL--LMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred cCcHHHHHHHHHHhcccHHHHH--HHHHHHHhccccccccCCCCCCccHHHHHHHHHH
Confidence 233446778888665333333 22222221 11122245555677777666644
No 367
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.26 E-value=2e-11 Score=104.68 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=41.9
Q ss_pred cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 104 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 104 ~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..|.++++|| |+++.|......+.+++..+. .+.+.+||++||+++.+..
T Consensus 171 ~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tviiisH~~~~~~~ 220 (272)
T PRK13547 171 QPPRYLLLDE-----------PTAALDLAHQHRLLDTVRRLA---RDWNLGVLAIVHDPNLAAR 220 (272)
T ss_pred CCCCEEEEcC-----------ccccCCHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHHHH
Confidence 4899999999 899999999999999998873 2336789999999887654
No 368
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.25 E-value=2.9e-11 Score=114.68 Aligned_cols=111 Identities=23% Similarity=0.338 Sum_probs=84.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCeEEEEcchhHHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~i~~~~~~~---------------------------------- 84 (270)
+|.+++|+.+.|+||+|+|||||++.+++.. ..+.+.+++.++..
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~ 449 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPD 449 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCC
Confidence 3567899999999999999999999999853 34556655532200
Q ss_pred ---------------------------hhhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ---------------------------KYIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ---------------------------~~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
..++ .++++.+-.+++|...+|.|+++|| ++++.|.
T Consensus 450 ~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE-----------~TSaLD~ 518 (588)
T PRK11174 450 ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE-----------PTASLDA 518 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCH
Confidence 0011 2456677788888889999999999 8889999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
...+.+.+.+..+. ++.++|+.||+++.+.
T Consensus 519 ~te~~i~~~l~~~~-----~~~TvIiItHrl~~i~ 548 (588)
T PRK11174 519 HSEQLVMQALNAAS-----RRQTTLMVTHQLEDLA 548 (588)
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEecChHHHH
Confidence 99988888887662 3578999999986554
No 369
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.7e-11 Score=103.85 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=78.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH----------H------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------Q------------------ 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------~------------------ 84 (270)
+|.+.++..+.|.||||+|||||++.|++.. ..+.+.+++.++. .
T Consensus 33 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 112 (269)
T PRK14259 33 FCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYE 112 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHH
Confidence 4567899999999999999999999999852 3344444332110 0
Q ss_pred ------hhhc---------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 85 ------KYIG---------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 85 ------~~~~---------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
...+ ...++.+-.+.+|....|.++++|| |
T Consensus 113 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE-----------P 181 (269)
T PRK14259 113 NIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDE-----------P 181 (269)
T ss_pred HHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------C
Confidence 0000 0011223334456667899999999 8
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++.|......+.+++..+. . +.+||++||+++.+..
T Consensus 182 t~gLD~~~~~~l~~~l~~~~----~-~~tiiivtH~~~~~~~ 218 (269)
T PRK14259 182 CSALDPISTLKIEETMHELK----K-NFTIVIVTHNMQQAVR 218 (269)
T ss_pred CccCCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHHHHH
Confidence 99999999999999998873 2 3689999999877654
No 370
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.25 E-value=1.9e-11 Score=104.78 Aligned_cols=114 Identities=24% Similarity=0.383 Sum_probs=79.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------------- 82 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------------- 82 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~ 111 (268)
T PRK10419 32 SLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREI 111 (268)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHH
Confidence 356789999999999999999999999973 2233333222110
Q ss_pred HHh----hhc-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCC
Q 024249 83 VQK----YIG-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG 127 (270)
Q Consensus 83 ~~~----~~~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~ 127 (270)
... ..+ ..+++.+-.+.+|....|.++++|| |++
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDE-----------Pt~ 180 (268)
T PRK10419 112 IREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE-----------AVS 180 (268)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeC-----------CCc
Confidence 000 000 1122234445557778999999999 889
Q ss_pred CCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 128 NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 128 ~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.|......+.+++..+. ...+.++|++||+++.+..
T Consensus 181 ~LD~~~~~~~~~~l~~~~---~~~~~tiiivsH~~~~i~~ 217 (268)
T PRK10419 181 NLDLVLQAGVIRLLKKLQ---QQFGTACLFITHDLRLVER 217 (268)
T ss_pred ccCHHHHHHHHHHHHHHH---HHcCcEEEEEECCHHHHHH
Confidence 999999999999988773 2336889999999887654
No 371
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.8e-11 Score=102.58 Aligned_cols=112 Identities=22% Similarity=0.383 Sum_probs=78.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-------CeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-------~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++... .+.+.+++.++.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 102 (249)
T PRK14253 23 NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYEN 102 (249)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHH
Confidence 35678999999999999999999999998532 344444321110
Q ss_pred ---H-hhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCC
Q 024249 84 ---Q-KYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124 (270)
Q Consensus 84 ---~-~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~ 124 (270)
. ...+ ...++.+-.+.+|....|.++++||
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------- 171 (249)
T PRK14253 103 VAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE----------- 171 (249)
T ss_pred HHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------
Confidence 0 0000 0011223444556677899999999
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 125 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. + +.+||++||+++.+..
T Consensus 172 P~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~~ 209 (249)
T PRK14253 172 PTSALDPIATHKIEELMEELK----K-NYTIVIVTHSMQQARR 209 (249)
T ss_pred CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEecCHHHHHH
Confidence 889999999999999999873 2 3789999999887654
No 372
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.25 E-value=5.1e-11 Score=97.07 Aligned_cols=111 Identities=20% Similarity=0.318 Sum_probs=83.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC--CeEEEEcchhHHHh--------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQK-------------------------------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~~~i~i~~~~~~~~-------------------------------- 85 (270)
+|.+..+..+.|.|+||+||||++++|++... .+.+.+.+.++...
T Consensus 23 sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g 102 (237)
T COG0410 23 SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLG 102 (237)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhh
Confidence 45678899999999999999999999998543 45666555443110
Q ss_pred --------------------hh----------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 86 --------------------YI----------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 86 --------------------~~----------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
++ + ++.++.+-++.+|....|.+++||| |+.+..|..
T Consensus 103 ~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDE-----------Ps~GLaP~i 171 (237)
T COG0410 103 AYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE-----------PSEGLAPKI 171 (237)
T ss_pred hhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecC-----------CccCcCHHH
Confidence 00 0 2344556677778889999999999 889999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
.+.+.+.+..+. .+.+++|+..-.+.+.
T Consensus 172 v~~I~~~i~~l~---~~~g~tIlLVEQn~~~ 199 (237)
T COG0410 172 VEEIFEAIKELR---KEGGMTILLVEQNARF 199 (237)
T ss_pred HHHHHHHHHHHH---HcCCcEEEEEeccHHH
Confidence 999999999984 3446888888776543
No 373
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.25 E-value=2.2e-11 Score=103.57 Aligned_cols=114 Identities=21% Similarity=0.337 Sum_probs=80.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc------CCeEEEEcchhH--------------------HH---------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGSEL--------------------VQ--------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~------~~~~i~i~~~~~--------------------~~--------- 84 (270)
+|.+.+|..+.|.||||+|||||++.|++.. ..+.+.+++.++ ..
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~ 102 (254)
T PRK10418 23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHA 102 (254)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHH
Confidence 4567899999999999999999999999853 224333322110 00
Q ss_pred ----hhhc-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 85 ----KYIG-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 85 ----~~~~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
...+ ..+++.+-.+.+|...+|.++++|| |+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE-----------Pt~~L 171 (254)
T PRK10418 103 RETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADE-----------PTTDL 171 (254)
T ss_pred HHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCccc
Confidence 0000 0122334555667778999999999 88999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|......+.+++..+. ...+.+||++||+++.+..
T Consensus 172 D~~~~~~l~~~L~~~~---~~~g~til~~sH~~~~~~~ 206 (254)
T PRK10418 172 DVVAQARILDLLESIV---QKRALGMLLVTHDMGVVAR 206 (254)
T ss_pred CHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHHHH
Confidence 9999999999998762 2346789999999887654
No 374
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.25 E-value=3.6e-11 Score=116.47 Aligned_cols=108 Identities=22% Similarity=0.303 Sum_probs=82.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|+.+.|+||+|||||||++.+++. +..+.+.+++.++..
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~ 579 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT 579 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCC
Confidence 45788999999999999999999999984 345666665543210
Q ss_pred --------------------h-------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 --------------------K-------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 --------------------~-------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
. ..+ .++++.+-.+++|...+|.|+++|| |+++.|.
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE-----------ptS~LD~ 648 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE-----------ATSALDP 648 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC-----------ccccCCH
Confidence 0 000 2355667778888889999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.....+.+.+.. .+.++|++||+++.+.
T Consensus 649 ~te~~i~~~l~~-------~~~T~IiitHrl~~i~ 676 (710)
T TIGR03796 649 ETEKIIDDNLRR-------RGCTCIIVAHRLSTIR 676 (710)
T ss_pred HHHHHHHHHHHh-------cCCEEEEEecCHHHHH
Confidence 999888887754 2578999999987654
No 375
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.4e-11 Score=103.22 Aligned_cols=113 Identities=20% Similarity=0.346 Sum_probs=79.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-------CeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-------~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++... .+.+.+++.++.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 103 (252)
T PRK14256 24 SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIY 103 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHH
Confidence 45678999999999999999999999998631 344444332110
Q ss_pred ---H--hhh-c-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCccc
Q 024249 84 ---Q--KYI-G-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 122 (270)
Q Consensus 84 ---~--~~~-~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~ 122 (270)
. ... + ..++..+..+.+|....|.++++||
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE--------- 174 (252)
T PRK14256 104 DNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDE--------- 174 (252)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcC---------
Confidence 0 000 0 0112223344456667899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 123 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
|.++.|...+..+.+++..+. + +.+||++||+++.+...
T Consensus 175 --P~~gLD~~~~~~l~~~l~~~~----~-~~tiiivsH~~~~~~~~ 213 (252)
T PRK14256 175 --PASALDPISTLKIEELIEELK----E-KYTIIIVTHNMQQAARV 213 (252)
T ss_pred --CcccCCHHHHHHHHHHHHHHH----h-CCcEEEEECCHHHHHhh
Confidence 889999999999999998873 2 36899999998876553
No 376
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.25 E-value=2.1e-11 Score=111.73 Aligned_cols=113 Identities=19% Similarity=0.350 Sum_probs=81.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchh--------------HHHh------hhc---------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE--------------LVQK------YIG--------- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~--------------~~~~------~~~--------- 88 (270)
+|.+.+|..+.|.||+|+|||||+++|++.. ..+.+.+++.. +... ..+
T Consensus 44 SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~ 123 (549)
T PRK13545 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI 123 (549)
T ss_pred EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH
Confidence 4567899999999999999999999999843 33433332210 0000 000
Q ss_pred ---------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCC
Q 024249 89 ---------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF 147 (270)
Q Consensus 89 ---------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 147 (270)
..+++.+-.+.+|....|.+|++|| |+++.|......+.+++..+.
T Consensus 124 i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE-----------PTsgLD~~sr~~LlelL~el~-- 190 (549)
T PRK13545 124 IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE-----------ALSVGDQTFTKKCLDKMNEFK-- 190 (549)
T ss_pred HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH--
Confidence 1223345566677888999999999 899999999999999998872
Q ss_pred cCCCCeEEEEEeCCCCCchh
Q 024249 148 EASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 148 ~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+.+||++||+++.+..
T Consensus 191 --~~G~TIIIVSHdl~~i~~ 208 (549)
T PRK13545 191 --EQGKTIFFISHSLSQVKS 208 (549)
T ss_pred --hCCCEEEEEECCHHHHHH
Confidence 346789999999887654
No 377
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.25 E-value=4.5e-11 Score=99.46 Aligned_cols=110 Identities=27% Similarity=0.379 Sum_probs=77.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++..+..
T Consensus 25 s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~ 104 (220)
T TIGR02982 25 NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQ 104 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHH
Confidence 355788999999999999999999999984 234444443321100
Q ss_pred --hhhc--------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 --KYIG--------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 --~~~~--------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.... ..+++.+-.+.++....|.++++|| |..+.|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDE-----------P~~~LD 173 (220)
T TIGR02982 105 MALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADE-----------PTAALD 173 (220)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCcCC
Confidence 0000 1112223444556678899999999 889999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
...+..+..++..+. .+.+.++|++||+.+
T Consensus 174 ~~~~~~l~~~l~~~~---~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 174 SKSGRDVVELMQKLA---REQGCTILIVTHDNR 203 (220)
T ss_pred HHHHHHHHHHHHHHH---HHcCCEEEEEeCCHH
Confidence 999999999998873 234689999999975
No 378
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=5.8e-11 Score=97.59 Aligned_cols=117 Identities=25% Similarity=0.386 Sum_probs=83.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhH---------------------HHhhhc--------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSEL---------------------VQKYIG-------- 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~---------------------~~~~~~-------- 88 (270)
+|.+..|..+.|.|+||+|||||+|.||+ .+..+.+.+++.-. .....|
T Consensus 47 sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~ 126 (249)
T COG1134 47 SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE 126 (249)
T ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHH
Confidence 46688999999999999999999999998 45566666554210 000000
Q ss_pred ----------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcC
Q 024249 89 ----------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG 146 (270)
Q Consensus 89 ----------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 146 (270)
...-..+-.|.-|....|.|+++||+ -+-.|...++...+.+.++
T Consensus 127 ~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv-----------lavGD~~F~~K~~~rl~e~-- 193 (249)
T COG1134 127 KVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV-----------LAVGDAAFQEKCLERLNEL-- 193 (249)
T ss_pred HHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh-----------hhcCCHHHHHHHHHHHHHH--
Confidence 12234567777788889999999995 4457788887777777776
Q ss_pred CcCCCCeEEEEEeCCCCCchhhhcC
Q 024249 147 FEASNKIKVLMATNRIDILDQALLR 171 (270)
Q Consensus 147 ~~~~~~~~vi~tt~~~~~l~~~l~r 171 (270)
..++.++|+.+|+.+.+-+...+
T Consensus 194 --~~~~~tiv~VSHd~~~I~~~Cd~ 216 (249)
T COG1134 194 --VEKNKTIVLVSHDLGAIKQYCDR 216 (249)
T ss_pred --HHcCCEEEEEECCHHHHHHhcCe
Confidence 23358899999999888765444
No 379
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.5e-11 Score=114.65 Aligned_cols=113 Identities=18% Similarity=0.277 Sum_probs=81.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC----CeEEEEcchhHH--------Hh---------------------h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD----CTFIRVSGSELV--------QK---------------------Y 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~----~~~i~i~~~~~~--------~~---------------------~ 86 (270)
+|.+.+|..+.|.||||+|||||+++|++... .+.+.+++.++. .. .
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 104 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIF 104 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhh
Confidence 45678899999999999999999999998532 455555432110 00 0
Q ss_pred h-------c-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCC
Q 024249 87 I-------G-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 128 (270)
Q Consensus 87 ~-------~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~ 128 (270)
. + ..+++.+-.+.+|....|.++++|| |+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE-----------Pt~~ 173 (506)
T PRK13549 105 LGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDE-----------PTAS 173 (506)
T ss_pred hcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCC
Confidence 0 0 1112234445557778999999999 8999
Q ss_pred CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.|+..+..+.+++..+. +.+.+||++||+++.+..
T Consensus 174 LD~~~~~~l~~~l~~l~----~~~~tvi~~tH~~~~~~~ 208 (506)
T PRK13549 174 LTESETAVLLDIIRDLK----AHGIACIYISHKLNEVKA 208 (506)
T ss_pred CCHHHHHHHHHHHHHHH----HCCCEEEEEeCcHHHHHH
Confidence 99999999999998873 236789999999887654
No 380
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=3.1e-11 Score=102.91 Aligned_cols=112 Identities=21% Similarity=0.375 Sum_probs=78.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-------CeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-------~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++... .+.+.+++.++.
T Consensus 32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 111 (259)
T PRK14274 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFD 111 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHH
Confidence 35678999999999999999999999998532 454444332110
Q ss_pred ----H-hhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 ----Q-KYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 ----~-~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ...+ ..+++.+-.+.++...+|.++++||
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDE---------- 181 (259)
T PRK14274 112 NVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDE---------- 181 (259)
T ss_pred HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------
Confidence 0 0000 0011123333445667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|...+..+.+++..+. + +.++|++||+.+.+..
T Consensus 182 -Pt~~LD~~~~~~l~~~l~~~~----~-~~tiiivtH~~~~~~~ 219 (259)
T PRK14274 182 -PTSALDPVSTRKIEELILKLK----E-KYTIVIVTHNMQQAAR 219 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHHh----c-CCEEEEEEcCHHHHHH
Confidence 899999999999999998873 2 4689999999877654
No 381
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.7e-11 Score=101.90 Aligned_cols=112 Identities=22% Similarity=0.341 Sum_probs=78.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 23 ~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 102 (250)
T PRK14262 23 TMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYD 102 (250)
T ss_pred eEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHH
Confidence 4668899999999999999999999999742 3454444432110
Q ss_pred --H---hhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 --Q---KYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 --~---~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ...+ ..++..+..+.+|...+|.++++||
T Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE---------- 172 (250)
T PRK14262 103 NVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE---------- 172 (250)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC----------
Confidence 0 0000 0011223344456667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. + +.++|++||+++.+..
T Consensus 173 -P~~~LD~~~~~~l~~~l~~~~----~-~~tili~sH~~~~~~~ 210 (250)
T PRK14262 173 -PTSALDPIATQRIEKLLEELS----E-NYTIVIVTHNIGQAIR 210 (250)
T ss_pred -CccccCHHHHHHHHHHHHHHh----c-CcEEEEEeCCHHHHHH
Confidence 889999999999999998873 2 4689999999886654
No 382
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2.3e-11 Score=103.48 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|...+|.++++|| |+++.|...+..+.++|..+. .+.+.+||++||+.+.+..
T Consensus 161 rv~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~L~~~~---~~~~~tii~~sH~~~~~~~ 219 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDE-----------PAAGLNPKETKELDELIAELR---NEHNVTVLLIEHDMKLVMG 219 (255)
T ss_pred HHHHHHHHhcCCCEEEEcC-----------CccCCCHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHHHHHH
Confidence 3444456678999999999 899999999999999998873 2336899999999887654
No 383
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.24 E-value=2.6e-11 Score=112.65 Aligned_cols=113 Identities=23% Similarity=0.304 Sum_probs=80.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH--------H----------------------hh-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------Q----------------------KY- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~--------~----------------------~~- 86 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++..+. . ..
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 102 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTT 102 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccH
Confidence 4567899999999999999999999999842 2333333221100 0 00
Q ss_pred ------------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHH
Q 024249 87 ------------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 134 (270)
Q Consensus 87 ------------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~ 134 (270)
++ ..+++.+..+.+|....|.++++|| |+++.|+...
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE-----------Pt~~LD~~~~ 171 (490)
T PRK10938 103 AEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE-----------PFDGLDVASR 171 (490)
T ss_pred HHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC-----------CcccCCHHHH
Confidence 00 1122334455557778999999999 8999999999
Q ss_pred HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 135 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 135 ~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+.+++..+. +.+.+||++||+++.+..
T Consensus 172 ~~l~~~l~~~~----~~g~tvii~tH~~~~~~~ 200 (490)
T PRK10938 172 QQLAELLASLH----QSGITLVLVLNRFDEIPD 200 (490)
T ss_pred HHHHHHHHHHH----hcCCeEEEEeCCHHHHHh
Confidence 99999998873 236789999999877654
No 384
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.2e-11 Score=102.24 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=78.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ 102 (250)
T PRK14240 23 NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYD 102 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHH
Confidence 4567899999999999999999999999742 2344444331110
Q ss_pred ----Hh-hhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 ----QK-YIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 ----~~-~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
.. ..+ ..+++.+-.+.+|....|.++++||
T Consensus 103 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---------- 172 (250)
T PRK14240 103 NVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE---------- 172 (250)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC----------
Confidence 00 000 0111223444556667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|...+..+.+++..+. . +.+||++||+.+.+..
T Consensus 173 -P~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sH~~~~~~~ 210 (250)
T PRK14240 173 -PTSALDPISTLKIEELIQELK----K-DYTIVIVTHNMQQASR 210 (250)
T ss_pred -CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEEeCHHHHHh
Confidence 889999999999999998873 2 4689999999876654
No 385
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.24 E-value=6e-10 Score=95.90 Aligned_cols=131 Identities=22% Similarity=0.264 Sum_probs=84.9
Q ss_pred CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC------------CCCchhhhcCC
Q 024249 105 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR------------IDILDQALLRP 172 (270)
Q Consensus 105 ~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~------------~~~l~~~l~r~ 172 (270)
-|.||||||++-| |-+.-..+...+. ..-..++|++||+ |.-++..++.
T Consensus 291 VpGVLFIDEvHmL------------DIE~FsFlnrAlE------se~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD- 351 (450)
T COG1224 291 VPGVLFIDEVHML------------DIECFSFLNRALE------SELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD- 351 (450)
T ss_pred ecceEEEechhhh------------hHHHHHHHHHHhh------cccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh-
Confidence 3779999996543 2222222222221 2224557777775 2334444443
Q ss_pred CCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 173 GRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 173 ~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
|+ ..|...+++.++-.+|++..++.... .++.-++.++....--|-+=-.+|+.-|.+.|-++++..+..+|+++|.
T Consensus 352 -Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 352 -RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred -he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 32 23556788999999999988765443 2333356666666555666666888888889988889999999999998
Q ss_pred HHHhh
Q 024249 252 AKVMK 256 (270)
Q Consensus 252 ~~~~~ 256 (270)
.-++-
T Consensus 430 ~lF~D 434 (450)
T COG1224 430 ELFLD 434 (450)
T ss_pred HHHhh
Confidence 87754
No 386
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.2e-11 Score=102.93 Aligned_cols=112 Identities=21% Similarity=0.327 Sum_probs=78.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 112 (260)
T PRK10744 33 NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYD 112 (260)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHH
Confidence 4668899999999999999999999999853 2344444321110
Q ss_pred --H---hhh-c----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 --Q---KYI-G----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 --~---~~~-~----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ... + ..+++.+-.+.+|...+|.++++||
T Consensus 113 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE---------- 182 (260)
T PRK10744 113 NIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDE---------- 182 (260)
T ss_pred HHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcC----------
Confidence 0 000 0 0112223444456668899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. . +.+||++||+++.+..
T Consensus 183 -Pt~~LD~~~~~~l~~~L~~~~----~-~~tiii~sH~~~~~~~ 220 (260)
T PRK10744 183 -PCSALDPISTGRIEELITELK----Q-DYTVVIVTHNMQQAAR 220 (260)
T ss_pred -CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEeCCHHHHHH
Confidence 899999999999999998873 2 4689999999876654
No 387
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=4.2e-11 Score=102.38 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=79.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH----------------------------H
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------Q 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------~ 84 (270)
+|.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++.++. .
T Consensus 30 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 109 (264)
T PRK14243 30 WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYD 109 (264)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHH
Confidence 4567899999999999999999999999742 2344444332110 0
Q ss_pred ------hhhc---------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 85 ------KYIG---------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 85 ------~~~~---------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
...+ ...++.+-.+.+|...+|.++++|| |
T Consensus 110 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE-----------P 178 (264)
T PRK14243 110 NIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDE-----------P 178 (264)
T ss_pred HHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------C
Confidence 0000 0011223444456667899999999 8
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+++.|...+..+.+++..+. . +.+||++||+.+.+...
T Consensus 179 t~~LD~~~~~~l~~~L~~~~----~-~~tvi~vtH~~~~~~~~ 216 (264)
T PRK14243 179 CSALDPISTLRIEELMHELK----E-QYTIIIVTHNMQQAARV 216 (264)
T ss_pred CccCCHHHHHHHHHHHHHHh----c-CCEEEEEecCHHHHHHh
Confidence 89999999999999998873 2 36899999998877654
No 388
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.2e-11 Score=102.78 Aligned_cols=112 Identities=20% Similarity=0.325 Sum_probs=78.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++..+.
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 111 (258)
T PRK14268 32 SMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYD 111 (258)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHH
Confidence 4567899999999999999999999999843 2444444321110
Q ss_pred ----H-hhhc----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCC
Q 024249 84 ----Q-KYIG----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124 (270)
Q Consensus 84 ----~-~~~~----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~ 124 (270)
. ...+ ..++..+-.+.+|....|.++++||
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE----------- 180 (258)
T PRK14268 112 NVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE----------- 180 (258)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------
Confidence 0 0000 0012223444456667899999999
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 125 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|...+..+.+++..+. + +.+||++||+++.+..
T Consensus 181 Pt~~LD~~~~~~l~~~l~~l~----~-~~tiiivsH~~~~~~~ 218 (258)
T PRK14268 181 PTSALDPISTARIEDLIMNLK----K-DYTIVIVTHNMQQAAR 218 (258)
T ss_pred CCcccCHHHHHHHHHHHHHHh----h-CCEEEEEECCHHHHHH
Confidence 899999999999999998873 2 4789999999887654
No 389
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.24 E-value=3.6e-11 Score=116.00 Aligned_cols=108 Identities=26% Similarity=0.398 Sum_probs=82.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|+.+.|.||+|||||||++.+++. +..+.+.+++.++..
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~ 553 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL 553 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCC
Confidence 55789999999999999999999999984 345566655432200
Q ss_pred -------------------h-------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 85 -------------------K-------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 85 -------------------~-------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
. ..+ .++++.+-.+++|...+|.|+++|| |+++.|+.
T Consensus 554 ~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE-----------pTS~LD~~ 622 (686)
T TIGR03797 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE-----------ATSALDNR 622 (686)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCHH
Confidence 0 000 2455677778888889999999999 88999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
..+.+.+.+..+ +.++|++||+++.+.
T Consensus 623 te~~i~~~L~~~-------~~T~IiItHr~~~i~ 649 (686)
T TIGR03797 623 TQAIVSESLERL-------KVTRIVIAHRLSTIR 649 (686)
T ss_pred HHHHHHHHHHHh-------CCeEEEEecChHHHH
Confidence 998888887765 258999999986654
No 390
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.8e-11 Score=102.49 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=80.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHHH---------h------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELVQ---------K------------------ 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~~---------~------------------ 85 (270)
+|.+.+|..+.|.||+|+|||||+++|++.. ..+.+.+++.++.. .
T Consensus 28 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 107 (261)
T PRK14263 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFD 107 (261)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHH
Confidence 4568899999999999999999999999753 24444443321100 0
Q ss_pred --hhc--------------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 86 --YIG--------------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 86 --~~~--------------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
..+ ...+..+-.+.+|....|.++++|| |
T Consensus 108 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------P 176 (261)
T PRK14263 108 NVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE-----------P 176 (261)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------C
Confidence 000 0112233444556678899999999 8
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+++.|...+..+.+++..+. + +.++|++||+++.+...
T Consensus 177 tsgLD~~~~~~l~~~l~~~~----~-~~tii~isH~~~~i~~~ 214 (261)
T PRK14263 177 CSALDPIATRRVEELMVELK----K-DYTIALVTHNMQQAIRV 214 (261)
T ss_pred CccCCHHHHHHHHHHHHHHh----c-CCeEEEEeCCHHHHHHh
Confidence 99999999999999998873 2 46899999998877653
No 391
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.4e-11 Score=102.63 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=79.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||++.|++.. ..+.+.+++.++.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 103 (258)
T PRK14241 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIR 103 (258)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHH
Confidence 4567899999999999999999999999853 2555555432110
Q ss_pred H------hhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCccc
Q 024249 84 Q------KYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 122 (270)
Q Consensus 84 ~------~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~ 122 (270)
. ...+ ..+++.+-.+.+|...+|.++++||
T Consensus 104 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE--------- 174 (258)
T PRK14241 104 DNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE--------- 174 (258)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---------
Confidence 0 0000 0001123333445567899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 123 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
|+++.|......+.+++..+. + +.+||++||+.+.+...
T Consensus 175 --Pt~~LD~~~~~~l~~~l~~~~----~-~~tviivsH~~~~~~~~ 213 (258)
T PRK14241 175 --PCSALDPISTLAIEDLINELK----Q-DYTIVIVTHNMQQAARV 213 (258)
T ss_pred --CCccCCHHHHHHHHHHHHHHh----c-CCEEEEEecCHHHHHHh
Confidence 899999999999999998873 2 36899999998876553
No 392
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.24 E-value=4.1e-11 Score=113.71 Aligned_cols=109 Identities=20% Similarity=0.357 Sum_probs=81.9
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+.+|+.++|.|++|+|||||++.+++. +..+.+.+++.++..
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 435 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD 435 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC
Confidence 45688999999999999999999999984 344556555432200
Q ss_pred --------------------h-------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 --------------------K-------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 --------------------~-------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
. ..+ .++++.+-.+++|...+|.|+++|| |+++.|+
T Consensus 436 ~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDE-----------pts~LD~ 504 (588)
T PRK13657 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE-----------ATSALDV 504 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCH
Confidence 0 000 2345667778888889999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.....+.+.+..+. ++.++|++||+++.+
T Consensus 505 ~t~~~i~~~l~~~~-----~~~tvIiitHr~~~~ 533 (588)
T PRK13657 505 ETEAKVKAALDELM-----KGRTTFIIAHRLSTV 533 (588)
T ss_pred HHHHHHHHHHHHHh-----cCCEEEEEEecHHHH
Confidence 99998888887652 357899999997644
No 393
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.5e-11 Score=103.03 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=79.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 118 (267)
T PRK14235 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYE 118 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHH
Confidence 3567899999999999999999999999853 3455554432110
Q ss_pred ----Hhh-hc------------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCccc
Q 024249 84 ----QKY-IG------------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 122 (270)
Q Consensus 84 ----~~~-~~------------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~ 122 (270)
... .+ ..+++.+-.+.+|....|.+|++||
T Consensus 119 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE--------- 189 (267)
T PRK14235 119 NVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDE--------- 189 (267)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---------
Confidence 000 00 0011223344446667899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 123 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. . +.+||++||+.+.+..
T Consensus 190 --Pt~~LD~~~~~~l~~~L~~l~----~-~~tiiivtH~~~~~~~ 227 (267)
T PRK14235 190 --PCSALDPIATAKVEELIDELR----Q-NYTIVIVTHSMQQAAR 227 (267)
T ss_pred --CCcCCCHHHHHHHHHHHHHHh----c-CCeEEEEEcCHHHHHh
Confidence 899999999999999998873 2 4689999999887654
No 394
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.24 E-value=5.7e-11 Score=100.78 Aligned_cols=111 Identities=27% Similarity=0.376 Sum_probs=80.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.++.|+.+.|.|-+|||||||+|++.+ ++..+-+.+++.++.
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv 127 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENV 127 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhh
Confidence 45678889999999999999999999987 455666666655431
Q ss_pred -------------------------------Hhhhch--hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 84 -------------------------------QKYIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 84 -------------------------------~~~~~~--~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.+|+++ +.-+.+.-+++|.+..|.|+++|| +.+.+|
T Consensus 128 ~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDE-----------aFSALD 196 (386)
T COG4175 128 AFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDE-----------AFSALD 196 (386)
T ss_pred hcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecC-----------chhhcC
Confidence 122222 233455667788899999999999 677888
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
|-.+..+..-|-.+. .+-+.+||+.||+.++
T Consensus 197 PLIR~~mQdeLl~Lq---~~l~KTIvFitHDLdE 227 (386)
T COG4175 197 PLIRTEMQDELLELQ---AKLKKTIVFITHDLDE 227 (386)
T ss_pred hHHHHHHHHHHHHHH---HHhCCeEEEEecCHHH
Confidence 877777766665552 3446889999998553
No 395
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.9e-11 Score=103.16 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=79.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH----------------------------H
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------Q 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------~ 84 (270)
+|.+.++..+.|.||||+|||||+++|++.. ..+.+.+++.++. .
T Consensus 40 s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~ 119 (274)
T PRK14265 40 HLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYE 119 (274)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHH
Confidence 4567899999999999999999999999742 1344443321110 0
Q ss_pred h-hh----------------------c----------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 85 K-YI----------------------G----------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 85 ~-~~----------------------~----------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
. .. + ..+++.+-.+.+|....|.++++|| |
T Consensus 120 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE-----------P 188 (274)
T PRK14265 120 NIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE-----------P 188 (274)
T ss_pred HHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC-----------C
Confidence 0 00 0 0112233444456678899999999 8
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+++.|......+.+++..+. + +.+||++||+++.+...
T Consensus 189 t~~LD~~~~~~l~~~L~~~~----~-~~tiii~sH~~~~~~~~ 226 (274)
T PRK14265 189 CSALDPISTRQVEELCLELK----E-QYTIIMVTHNMQQASRV 226 (274)
T ss_pred cccCCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHHHHHh
Confidence 99999999999999998873 2 36899999998877653
No 396
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.23 E-value=4.9e-11 Score=115.22 Aligned_cols=110 Identities=22% Similarity=0.325 Sum_probs=83.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|..+.|+||+|+|||||++.+++. +..+.+.+++.++..
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~ 565 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY 565 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCC
Confidence 45788999999999999999999999984 345666665432210
Q ss_pred --------------------hh-------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 --------------------KY-------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 --------------------~~-------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.. .+ .++++.+-.+++|...+|.++++|| |+++.|+
T Consensus 566 ~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE-----------~Ts~LD~ 634 (694)
T TIGR03375 566 ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE-----------PTSAMDN 634 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCCCCH
Confidence 00 00 2345667777888889999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.....+.+.+..+. ++.++|++||+++.+.
T Consensus 635 ~te~~i~~~l~~~~-----~~~T~iiItHrl~~~~ 664 (694)
T TIGR03375 635 RSEERFKDRLKRWL-----AGKTLVLVTHRTSLLD 664 (694)
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEecCHHHHH
Confidence 99999988887762 3578999999987553
No 397
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=4.4e-11 Score=101.97 Aligned_cols=113 Identities=19% Similarity=0.322 Sum_probs=79.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-------CeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-------~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.|++|+|||||++.|++... .+.+.+++.++.
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 106 (259)
T PRK14260 27 SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYE 106 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHH
Confidence 45678999999999999999999999998532 344444322110
Q ss_pred ----H-hhh---c--------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 ----Q-KYI---G--------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 ----~-~~~---~--------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ... . ...++.+-.+.+|....|.++++||
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---------- 176 (259)
T PRK14260 107 NVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE---------- 176 (259)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------
Confidence 0 000 0 0111223444456667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
|+++.|...+..+.+++..+. + +.+||++||+++.+...
T Consensus 177 -Pt~~LD~~~~~~l~~~l~~~~----~-~~tiii~tH~~~~i~~~ 215 (259)
T PRK14260 177 -PCSALDPIATMKVEELIHSLR----S-ELTIAIVTHNMQQATRV 215 (259)
T ss_pred -CCccCCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHHHHHh
Confidence 899999999999999998873 2 37899999999887654
No 398
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=7.2e-11 Score=107.66 Aligned_cols=111 Identities=28% Similarity=0.387 Sum_probs=86.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
++.+++++.+.|+|++|||||||++.|++. +..+.+.+++.++..
T Consensus 341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~ 420 (559)
T COG4988 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP 420 (559)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC
Confidence 356788999999999999999999999984 345667766544210
Q ss_pred ---------------------h------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ---------------------K------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ---------------------~------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
. .++ .+++..+-.+++|.-.+++++++|| |+++.|.
T Consensus 421 ~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE-----------pTA~LD~ 489 (559)
T COG4988 421 DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE-----------PTAHLDA 489 (559)
T ss_pred cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC-----------CccCCCH
Confidence 0 011 2445677888888888999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+....+.+.+.++. +..+||++||++..+-
T Consensus 490 etE~~i~~~l~~l~-----~~ktvl~itHrl~~~~ 519 (559)
T COG4988 490 ETEQIILQALQELA-----KQKTVLVITHRLEDAA 519 (559)
T ss_pred hHHHHHHHHHHHHH-----hCCeEEEEEcChHHHh
Confidence 99999999998873 3478999999987654
No 399
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=4e-11 Score=101.86 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
-.+.+|....|.++++|| |+++.|......+.+++..+. + +.+||++||+++.+..
T Consensus 158 v~laral~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sH~~~~~~~ 213 (253)
T PRK14267 158 LVIARALAMKPKILLMDE-----------PTANIDPVGTAKIEELLFELK----K-EYTIVLVTHSPAQAAR 213 (253)
T ss_pred HHHHHHHhcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHh----h-CCEEEEEECCHHHHHh
Confidence 333445667899999999 889999999999999998873 2 3789999999887654
No 400
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=4.5e-11 Score=101.46 Aligned_cols=112 Identities=22% Similarity=0.333 Sum_probs=78.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 103 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYD 103 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHH
Confidence 4567899999999999999999999999853 2444444332110
Q ss_pred ----H-hhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 ----Q-KYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 ----~-~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ...+ ..+++.+-.+.+|...+|.++++||
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDE---------- 173 (251)
T PRK14251 104 NVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDE---------- 173 (251)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecC----------
Confidence 0 0000 0011223344456667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|.++.|+.....+.+++..+. + +.+||++||+++.+..
T Consensus 174 -P~~~LD~~~~~~l~~~l~~~~----~-~~tiiiisH~~~~~~~ 211 (251)
T PRK14251 174 -PTSALDPISSSEIEETLMELK----H-QYTFIMVTHNLQQAGR 211 (251)
T ss_pred -CCccCCHHHHHHHHHHHHHHH----c-CCeEEEEECCHHHHHh
Confidence 889999999999999998873 2 3789999999887654
No 401
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.23 E-value=4.1e-11 Score=102.33 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+-.+.+|....|.+|++|| |+++.|......+.+++..+. ...+.+||++||+++.+...
T Consensus 160 rv~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~g~tvii~tH~~~~~~~~ 219 (262)
T PRK09984 160 RVAIARALMQQAKVILADE-----------PIASLDPESARIVMDTLRDIN---QNDGITVVVTLHQVDYALRY 219 (262)
T ss_pred HHHHHHHHhcCCCEEEecC-----------ccccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHHh
Confidence 3334446678899999999 899999999999999998873 23368999999999876543
No 402
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.23 E-value=5.7e-11 Score=98.68 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH--HHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 94 VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE--LLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 94 ~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.+-.+.+|...+|.++++|| |+++.|......+.+ ++..+. +.+.++|++||+.+.+
T Consensus 147 qrv~laral~~~p~illlDE-----------Pt~~LD~~~~~~l~~~~ll~~~~----~~~~tii~~sH~~~~~ 205 (218)
T cd03290 147 QRICVARALYQNTNIVFLDD-----------PFSALDIHLSDHLMQEGILKFLQ----DDKRTLVLVTHKLQYL 205 (218)
T ss_pred HHHHHHHHHhhCCCEEEEeC-----------CccccCHHHHHHHHHHHHHHHHh----cCCCEEEEEeCChHHH
Confidence 34455566778899999999 888999988887776 666652 3368999999998765
No 403
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.23 E-value=1.2e-09 Score=101.29 Aligned_cols=226 Identities=17% Similarity=0.307 Sum_probs=146.2
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHh----------cCCeEEEEcchh
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH----------TDCTFIRVSGSE 81 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~----------~~~~~i~i~~~~ 81 (270)
+.+.+.+..+.+|..++...+... ..+..+.++|-||||||.+++.+... +...++.+++-.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~--------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQ--------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCC--------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 567888999999999998875431 23457889999999999999999863 345678888765
Q ss_pred HHHh----------hhch------hhHHHHHHHHHH-HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhh
Q 024249 82 LVQK----------YIGE------GSRMVRELFVMA-REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 144 (270)
Q Consensus 82 ~~~~----------~~~~------~~~~~~~~~~~a-~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l 144 (270)
+... ..++ .-..+...|... -...|+||+|||+|.|+... +.+++.+++--
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~------------QdVlYn~fdWp 535 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS------------QDVLYNIFDWP 535 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc------------HHHHHHHhcCC
Confidence 4321 1111 111122222211 12357899999999987542 44566665543
Q ss_pred cCCcCCCCeEEEEEeCCCCCchhhhcC--CCCcc-eEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCH-
Q 024249 145 DGFEASNKIKVLMATNRIDILDQALLR--PGRID-RKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASG- 220 (270)
Q Consensus 145 ~~~~~~~~~~vi~tt~~~~~l~~~l~r--~~r~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~- 220 (270)
. ..+.+.+||+.+|.++.....+-. ..|++ ..+.|.+++..|..+|+...+........--..-+|..-+-.||
T Consensus 536 t--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD 613 (767)
T KOG1514|consen 536 T--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD 613 (767)
T ss_pred c--CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc
Confidence 2 133467788888887765544321 11443 45889999999999999887765532222223334444444444
Q ss_pred -HHHHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHhhhhh
Q 024249 221 -AELKAVCTEAGMFALRERR-------IHVTQEDFEMAVAKVMKKET 259 (270)
Q Consensus 221 -~dl~~l~~~a~~~a~~~~~-------~~i~~~d~~~a~~~~~~~~~ 259 (270)
+-...+|++|...|..+.. ..++..|+..|++.++.+..
T Consensus 614 aRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 614 ARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhH
Confidence 3344789999988876654 56889999999999987543
No 404
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=3.8e-11 Score=103.12 Aligned_cols=112 Identities=23% Similarity=0.374 Sum_probs=79.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 124 (272)
T PRK14236 45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYE 124 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHH
Confidence 4568899999999999999999999999863 2444444321110
Q ss_pred ----H-hhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 ----Q-KYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 ----~-~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ...+ ..+++.+-.+.+|....|.++++||
T Consensus 125 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE---------- 194 (272)
T PRK14236 125 NVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE---------- 194 (272)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeC----------
Confidence 0 0000 0112223444456667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|...+..+.+++..+. + +.++|++||+++.+..
T Consensus 195 -Pt~gLD~~~~~~l~~~L~~~~----~-~~tiiivtH~~~~~~~ 232 (272)
T PRK14236 195 -PTSALDPISTLKIEELITELK----S-KYTIVIVTHNMQQAAR 232 (272)
T ss_pred -CcccCCHHHHHHHHHHHHHHH----h-CCeEEEEeCCHHHHHh
Confidence 899999999999999998873 2 3689999999887654
No 405
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=4.2e-11 Score=101.58 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
-.+.+|....|.++++|| |+++.|...+..+.+++..+. . +.+||++||+++.+..
T Consensus 155 v~laral~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tiiivtH~~~~~~~ 210 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDE-----------PASALDPISTAKVEELIHELK----K-DYTIVIVTHNMQQAAR 210 (250)
T ss_pred HHHHHHHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEeCCHHHHHh
Confidence 334445667899999999 899999999999999998873 2 4689999999887654
No 406
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.23 E-value=4.1e-11 Score=101.74 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+-.+.+|....|.++++|| |+++.|......+.+++..+. +.+.+||++||+++.+.
T Consensus 159 rv~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tii~~tH~~~~~~ 215 (252)
T CHL00131 159 RNEILQMALLDSELAILDE-----------TDSGLDIDALKIIAEGINKLM----TSENSIILITHYQRLLD 215 (252)
T ss_pred HHHHHHHHHcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH----hCCCEEEEEecCHHHHH
Confidence 4445556678899999999 899999999999999998873 23678999999987554
No 407
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.23 E-value=5.6e-10 Score=109.37 Aligned_cols=201 Identities=22% Similarity=0.299 Sum_probs=121.6
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCC---CCC-ceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHH
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGI---AQP-KGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 84 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~---~~~-~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~ 84 (270)
+.|.|++..++.+.+.+..... |+ ..| ..++|+||+|+|||++++++|..+ ...+++++.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~--------gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARV--------GLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhh--------cccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 5789999999999988875321 11 123 357899999999999999999865 35678887766422
Q ss_pred -----hhhch----hh-HHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc--C---C-c
Q 024249 85 -----KYIGE----GS-RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD--G---F-E 148 (270)
Q Consensus 85 -----~~~~~----~~-~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~---~-~ 148 (270)
...|. .+ .....+....+....+||+|||+|+. ++...+.+.++++.-. . . .
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka------------~~~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA------------HPDIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC------------CHHHHHHHHHHhccCceecCCCcEE
Confidence 11111 00 01112233334444589999999873 4556677777776421 0 0 0
Q ss_pred CCCCeEEEEEeCCCCC--------c-----------------------------hhhhcCCCCcceEEEeCCCCHHHHHH
Q 024249 149 ASNKIKVLMATNRIDI--------L-----------------------------DQALLRPGRIDRKIEFPNPNEESRLD 191 (270)
Q Consensus 149 ~~~~~~vi~tt~~~~~--------l-----------------------------~~~l~r~~r~~~~i~~~~p~~~~r~~ 191 (270)
.-.+.++|+|||.-.. + .|.++ +|+|..+.|.+.+.++...
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefl--nRid~ii~F~pL~~~~l~~ 726 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFL--NRLDEIIVFRQLTKNDVWE 726 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHh--ccCCeEEEeCCCCHHHHHH
Confidence 1135678888874321 0 01122 3788999999999999999
Q ss_pred HHHHhhccCC--C-CCC----CC---HHHHHHHc--CCCCHHHHHHHHHHHHHHH
Q 024249 192 ILKIHSRRMN--L-MRG----ID---LKKIAEKM--NGASGAELKAVCTEAGMFA 234 (270)
Q Consensus 192 il~~~~~~~~--~-~~~----~~---~~~la~~~--~g~~~~dl~~l~~~a~~~a 234 (270)
|++..+.... + ..+ ++ .+.+++.. ..|-++.|+.++++-....
T Consensus 727 Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~ 781 (821)
T CHL00095 727 IAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDP 781 (821)
T ss_pred HHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence 9876654321 0 111 11 34455542 2444677777776655443
No 408
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.23 E-value=8.1e-10 Score=101.88 Aligned_cols=211 Identities=19% Similarity=0.283 Sum_probs=120.6
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC--CeEEEEcchhHHH---
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQ--- 84 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~~~i~i~~~~~~~--- 84 (270)
.|+++.|.+..++.+...+ ..+..++|.|||||||||+++.+++... .+...+....+.+
T Consensus 190 d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 6788899887766554332 3467899999999999999999997321 1111121111100
Q ss_pred -----------------------hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHH
Q 024249 85 -----------------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 141 (270)
Q Consensus 85 -----------------------~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l 141 (270)
..+|.+.....-.+..| ...+|||||++.+ +...+..+.+.|
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~------------~~~~~~~L~~~L 319 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF------------KRSVLDALREPI 319 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC------------CHHHHHHHHHHH
Confidence 00110000000112222 3359999998764 345566667766
Q ss_pred Hhhc----C----CcCCCCeEEEEEeCCC-----C------------------CchhhhcCCCCcceEEEeCCCCHHH--
Q 024249 142 NQLD----G----FEASNKIKVLMATNRI-----D------------------ILDQALLRPGRIDRKIEFPNPNEES-- 188 (270)
Q Consensus 142 ~~l~----~----~~~~~~~~vi~tt~~~-----~------------------~l~~~l~r~~r~~~~i~~~~p~~~~-- 188 (270)
+.-. . .....+..+|+++|.- . .+...++. |||..+.++.++.++
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 5421 0 0112367888888852 1 24445666 899999888654432
Q ss_pred -----------HHHHHHHhh------ccC---CCCCCCCHHH----------------HHHHcCCCCHHHHHHHHHHHHH
Q 024249 189 -----------RLDILKIHS------RRM---NLMRGIDLKK----------------IAEKMNGASGAELKAVCTEAGM 232 (270)
Q Consensus 189 -----------r~~il~~~~------~~~---~~~~~~~~~~----------------la~~~~g~~~~dl~~l~~~a~~ 232 (270)
|..+.+... +.. .......... -+....+.|.+-...+++-|.-
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVART 477 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 233332211 110 1111111111 1112246889999999999988
Q ss_pred HHHHhcCCCCCHHHHHHHHH
Q 024249 233 FALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 233 ~a~~~~~~~i~~~d~~~a~~ 252 (270)
.|--++...++.+|+.+|+.
T Consensus 478 iAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHh
Confidence 88888899999999999974
No 409
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=4e-11 Score=101.85 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
-.+.++....|.++++|| |+++.|...+..+.+++..+. + +.+||++||+++.+..
T Consensus 158 v~laral~~~p~lllLDE-----------P~~gLD~~~~~~l~~~l~~~~----~-~~tvii~sh~~~~~~~ 213 (253)
T PRK14261 158 LCIARTLAVNPEVILMDE-----------PCSALDPIATAKIEDLIEDLK----K-EYTVIIVTHNMQQAAR 213 (253)
T ss_pred HHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHh----h-CceEEEEEcCHHHHHh
Confidence 334456667899999999 889999999999999998873 2 3689999999887654
No 410
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=3.2e-11 Score=106.33 Aligned_cols=59 Identities=20% Similarity=0.466 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+++|...+|.+|++|| |+++.|...+..+.+++..+. ...+.++|++||+.+.+..
T Consensus 166 Rv~iArAL~~~P~llilDE-----------Pts~LD~~~~~~i~~lL~~l~---~~~g~tii~itHdl~~v~~ 224 (330)
T PRK15093 166 KVMIAIALANQPRLLIADE-----------PTNAMEPTTQAQIFRLLTRLN---QNNNTTILLISHDLQMLSQ 224 (330)
T ss_pred HHHHHHHHHCCCCEEEEeC-----------CCCcCCHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHHHH
Confidence 3444556778899999999 899999999999999999873 3347899999999877654
No 411
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.7e-11 Score=111.12 Aligned_cols=112 Identities=24% Similarity=0.366 Sum_probs=86.1
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHHHh---------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQK--------------------------------- 85 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~~~--------------------------------- 85 (270)
|.++||+.+.|+||+|+||||++..+-+ ++..+-+.+++.++.+-
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~ 568 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN 568 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC
Confidence 4679999999999999999999999987 34566666666554110
Q ss_pred ----------------------------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 86 ----------------------------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 86 ----------------------------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.+| .++++.+-++++|.-.+|+||+||| .++.+|.
T Consensus 569 ~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDE-----------ATSALDa 637 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDE-----------ATSALDA 637 (716)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEec-----------hhhhcch
Confidence 011 3456778888999999999999999 5677888
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+....+.+.++.+- ++.+||.++|+...+..+
T Consensus 638 eSE~lVq~aL~~~~-----~~rTVlvIAHRLSTV~~A 669 (716)
T KOG0058|consen 638 ESEYLVQEALDRLM-----QGRTVLVIAHRLSTVRHA 669 (716)
T ss_pred hhHHHHHHHHHHhh-----cCCeEEEEehhhhHhhhc
Confidence 88888888887652 247899999998887654
No 412
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.22 E-value=4.6e-11 Score=102.30 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=79.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 119 (267)
T PRK14237 40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYE 119 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHH
Confidence 3567899999999999999999999999854 2454444332110
Q ss_pred -----Hhhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 -----QKYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 -----~~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
....+ ..+++.+-.+.+|...+|.++++||
T Consensus 120 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE---------- 189 (267)
T PRK14237 120 NITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDE---------- 189 (267)
T ss_pred HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------
Confidence 00000 0011223444556678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. + +.+||++||+++.+..
T Consensus 190 -Pt~~LD~~~~~~l~~~l~~~~----~-~~tiii~tH~~~~~~~ 227 (267)
T PRK14237 190 -PASALDPISTMQLEETMFELK----K-NYTIIIVTHNMQQAAR 227 (267)
T ss_pred -CcccCCHHHHHHHHHHHHHHh----c-CCEEEEEecCHHHHHH
Confidence 889999999999999998873 2 4689999999887654
No 413
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.22 E-value=4.3e-11 Score=101.34 Aligned_cols=112 Identities=21% Similarity=0.359 Sum_probs=79.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--C-----CeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--D-----CTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~-----~~~i~i~~~~~~----------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. . .+.+.+++.++.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 100 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYD 100 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHH
Confidence 4568899999999999999999999999853 2 454544332110
Q ss_pred ----H-hhhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 ----Q-KYIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 ----~-~~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ...+ ..+++.+-.+.+|...+|.++++||
T Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---------- 170 (247)
T TIGR00972 101 NIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE---------- 170 (247)
T ss_pred HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------
Confidence 0 0000 0112233444556678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. + +.+||++||+++.+..
T Consensus 171 -Pt~~LD~~~~~~l~~~l~~~~----~-~~tiiivsH~~~~~~~ 208 (247)
T TIGR00972 171 -PTSALDPIATGKIEELIQELK----K-KYTIVIVTHNMQQAAR 208 (247)
T ss_pred -CcccCCHHHHHHHHHHHHHHH----h-cCeEEEEecCHHHHHH
Confidence 899999999999999998873 2 2689999999887654
No 414
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.22 E-value=3.1e-10 Score=102.03 Aligned_cols=144 Identities=23% Similarity=0.364 Sum_probs=82.5
Q ss_pred cccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-------eEEEEcch---
Q 024249 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVSGS--- 80 (270)
Q Consensus 11 ~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~-------~~i~i~~~--- 80 (270)
.+++.+.+...+.+...+. .+..++|+||||||||++|+.+|..... ..+.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 3456666666655554444 3578999999999999999999986532 12222221
Q ss_pred -hHHHhh-hchh-----hHHHHHHHHHHHh--cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHh--------
Q 024249 81 -ELVQKY-IGEG-----SRMVRELFVMARE--HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ-------- 143 (270)
Q Consensus 81 -~~~~~~-~~~~-----~~~~~~~~~~a~~--~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~-------- 143 (270)
++...+ ++.. ...+..++..|.. ..|.+|||||++.--.. ..-..+..+++.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~-----------kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS-----------KVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH-----------Hhhhhhhhhccccccccccc
Confidence 222111 1110 1123445556654 35899999998763211 111112222221
Q ss_pred ---------hcCCcCCCCeEEEEEeCCCC----CchhhhcCCCCcceEEEeCC
Q 024249 144 ---------LDGFEASNKIKVLMATNRID----ILDQALLRPGRIDRKIEFPN 183 (270)
Q Consensus 144 ---------l~~~~~~~~~~vi~tt~~~~----~l~~~l~r~~r~~~~i~~~~ 183 (270)
.+.+.-..++.||+|+|..+ .+|.|++| ||.. +++.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 01123345789999999887 78999999 7743 55543
No 415
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=4.4e-10 Score=98.09 Aligned_cols=183 Identities=15% Similarity=0.221 Sum_probs=115.4
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe----------------
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------------- 73 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~---------------- 73 (270)
.|++|.|.+..++.+.+.+..- .-+..+|++||+|+||++++.++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4889999999999999998763 236789999999999999999999754221
Q ss_pred --EEEEcchh------HHHhh---hc--------hhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 74 --FIRVSGSE------LVQKY---IG--------EGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 74 --~i~i~~~~------~~~~~---~~--------~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
++.+.+.. +.... .+ -....++++...+. .....|++||++|.+ +
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------~ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------N 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc------------C
Confidence 12222110 00000 00 01123455444432 245679999998764 2
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHH
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKK 210 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 210 (270)
....+.+...|++- . ..++|++|++++.+.+.+++ |. ..+.|++++.++-.++++...... ..+.+...
T Consensus 138 ~~aaNaLLK~LEEP-----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~ 206 (314)
T PRK07399 138 EAAANALLKTLEEP-----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPE 206 (314)
T ss_pred HHHHHHHHHHHhCC-----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc--cchhHHHH
Confidence 33444455555432 2 34677888899999998887 43 568999999999888887653211 11122467
Q ss_pred HHHHcCCCCHHHHHHHHH
Q 024249 211 IAEKMNGASGAELKAVCT 228 (270)
Q Consensus 211 la~~~~g~~~~dl~~l~~ 228 (270)
++....| +++....+++
T Consensus 207 l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 207 LLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHcCC-CHHHHHHHHH
Confidence 7777777 4444444443
No 416
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=5.2e-11 Score=102.97 Aligned_cols=112 Identities=18% Similarity=0.342 Sum_probs=79.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHHH----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELVQ---------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~~---------------------------- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++..
T Consensus 59 sl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 138 (286)
T PRK14275 59 NADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFD 138 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHH
Confidence 3567899999999999999999999999831 44544443321100
Q ss_pred -----hhh-c-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 85 -----KYI-G-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 85 -----~~~-~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
... + ..+++.+-.+.+|...+|.++++||
T Consensus 139 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE---------- 208 (286)
T PRK14275 139 NIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDE---------- 208 (286)
T ss_pred HHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------
Confidence 000 0 0112233444556678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. . +.+||++||+.+.+..
T Consensus 209 -Pt~gLD~~~~~~l~~~L~~~~----~-~~tvIivsH~~~~~~~ 246 (286)
T PRK14275 209 -PTSALDPKATAKIEDLIQELR----G-SYTIMIVTHNMQQASR 246 (286)
T ss_pred -CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEeCCHHHHHH
Confidence 899999999999999998873 2 3689999999887654
No 417
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.22 E-value=5.6e-11 Score=111.39 Aligned_cols=109 Identities=26% Similarity=0.376 Sum_probs=81.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|+.+.|+||+|+|||||++.+++. +..+.+.+++.++..
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~ 422 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD 422 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC
Confidence 45789999999999999999999999983 334555554432200
Q ss_pred --------------------h-------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 --------------------K-------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 --------------------~-------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
. ..+ .++++.+-.+++|...+|.++++|| |+++.|+
T Consensus 423 ~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE-----------~ts~lD~ 491 (529)
T TIGR02857 423 ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE-----------PTAHLDA 491 (529)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------cccccCH
Confidence 0 000 2345667777888889999999999 8889999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
...+.+.+.+..+. .+.++|+.||+++.+
T Consensus 492 ~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 492 ETEALVTEALRALA-----QGRTVLLVTHRLALA 520 (529)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEEEecCHHHH
Confidence 99998888887762 357899999997544
No 418
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.22 E-value=7.9e-11 Score=111.26 Aligned_cols=110 Identities=21% Similarity=0.338 Sum_probs=81.2
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|..+.|.||+|+|||||++.+++. +..+.+.+++.++..
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~ 415 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPD 415 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCC
Confidence 45789999999999999999999999984 334545444322100
Q ss_pred --------------------hh-------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 --------------------KY-------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 --------------------~~-------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.. .+ .++++.+-.+++|...+|.++++|| |+++.|.
T Consensus 416 ~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDE-----------pts~LD~ 484 (569)
T PRK10789 416 ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD-----------ALSAVDG 484 (569)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC-----------ccccCCH
Confidence 00 00 1234566677888889999999999 8889999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.....+.+.+..+. ++.++|++||+++.+.
T Consensus 485 ~~~~~i~~~l~~~~-----~~~tii~itH~~~~~~ 514 (569)
T PRK10789 485 RTEHQILHNLRQWG-----EGRTVIISAHRLSALT 514 (569)
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEecchhHHH
Confidence 99998888887752 3578999999986654
No 419
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.22 E-value=2.6e-11 Score=112.63 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=80.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH----------------------------HHh----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------VQK---- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------~~~---- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ ...
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 97 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLG 97 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcc
Confidence 456788999999999999999999999984 2334443332110 000
Q ss_pred -h--------------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 86 -Y--------------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 86 -~--------------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. +. ..+++.+-.+.+|....|.++++|| |+++.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE-----------Pt~~LD 166 (491)
T PRK10982 98 RYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE-----------PTSSLT 166 (491)
T ss_pred cccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC-----------CCCCCC
Confidence 0 00 1122334555567778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
......+.+++..+. ..+.+||++||+++.+..
T Consensus 167 ~~~~~~l~~~l~~l~----~~g~tvii~tH~~~~~~~ 199 (491)
T PRK10982 167 EKEVNHLFTIIRKLK----ERGCGIVYISHKMEEIFQ 199 (491)
T ss_pred HHHHHHHHHHHHHHH----hCCCEEEEEecCHHHHHH
Confidence 999999999998873 346789999999887654
No 420
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.22 E-value=4.4e-11 Score=101.51 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
-.+.+|...+|.++++|| |+++.|......+.+++..+. + +.+||++||+.+.+..
T Consensus 157 v~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tii~~sH~~~~~~~ 212 (252)
T PRK14239 157 VCIARVLATSPKIILLDE-----------PTSALDPISAGKIEETLLGLK----D-DYTMLLVTRSMQQASR 212 (252)
T ss_pred HHHHHHHhcCCCEEEEcC-----------CccccCHHHHHHHHHHHHHHh----h-CCeEEEEECCHHHHHH
Confidence 334446667899999999 899999999999999998873 2 3689999999876654
No 421
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=4.8e-11 Score=101.25 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
..+.+|...+|.++++|| |+++.|......+.+++..+. .+.+||++||+.+.+...
T Consensus 156 v~laral~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~-----~~~tilivsh~~~~~~~~ 212 (251)
T PRK14249 156 LCIARVLAIEPEVILMDE-----------PCSALDPVSTMRIEELMQELK-----QNYTIAIVTHNMQQAARA 212 (251)
T ss_pred HHHHHHHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHh-----cCCEEEEEeCCHHHHHhh
Confidence 344456667899999999 899999999999999998872 257899999998877653
No 422
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.22 E-value=7.9e-11 Score=111.38 Aligned_cols=109 Identities=27% Similarity=0.389 Sum_probs=81.7
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV----------------------------------- 83 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~----------------------------------- 83 (270)
+.+++|..++|.|++|+|||||++.+++. +..+.+.+++.++.
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE 432 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC
Confidence 45788999999999999999999999984 34455555542210
Q ss_pred --------------------Hhh-------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 84 --------------------QKY-------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 84 --------------------~~~-------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
... ++ .++++.+-.+.+|...+|.|+++|| |+++.|
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDE-----------pts~LD 501 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDE-----------ATSALD 501 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------ccccCC
Confidence 000 00 2345667777888889999999999 889999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
....+.+.+.+..+. ++.++|+.||++..+
T Consensus 502 ~~~~~~i~~~L~~~~-----~~~tiIiitH~~~~~ 531 (571)
T TIGR02203 502 NESERLVQAALERLM-----QGRTTLVIAHRLSTI 531 (571)
T ss_pred HHHHHHHHHHHHHHh-----CCCEEEEEehhhHHH
Confidence 999998888887652 357899999997554
No 423
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=5.2e-11 Score=101.12 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
-.+.++....|.++++|| |+++.|......+.+++..+. + +.++|++||+++.+..
T Consensus 157 v~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tii~vsH~~~~~~~ 212 (252)
T PRK14255 157 VCIARVLAVKPDVILLDE-----------PTSALDPISSTQIENMLLELR----D-QYTIILVTHSMHQASR 212 (252)
T ss_pred HHHHHHHhcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHH----h-CCEEEEEECCHHHHHH
Confidence 344456667899999999 899999999999999998873 2 3689999999887654
No 424
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=5e-11 Score=101.16 Aligned_cols=113 Identities=20% Similarity=0.304 Sum_probs=78.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------- 83 (270)
++.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 103 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYD 103 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHH
Confidence 4567899999999999999999999999852 2354554432210
Q ss_pred --H--h-hhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 --Q--K-YIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 --~--~-~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. . ..+ ..+++.+-.+.+|...+|.++++||
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---------- 173 (251)
T PRK14270 104 NVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDE---------- 173 (251)
T ss_pred HHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------
Confidence 0 0 000 0011122333445667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
|+++.|...+..+.+++..+. + +.+||++||+.+.+...
T Consensus 174 -P~~~LD~~~~~~l~~~L~~~~----~-~~tiiivsH~~~~~~~~ 212 (251)
T PRK14270 174 -PTSALDPISTLKIEDLMVELK----K-EYTIVIVTHNMQQASRV 212 (251)
T ss_pred -CcccCCHHHHHHHHHHHHHHH----h-CCeEEEEEcCHHHHHHh
Confidence 889999999999999998873 2 36899999998876543
No 425
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.21 E-value=5.7e-11 Score=111.10 Aligned_cols=59 Identities=14% Similarity=0.318 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+++|....|.++++|| |+++.|+.....+.+++..+. .+.+.+||++||+.+.+..
T Consensus 176 rv~iA~al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~~ 234 (520)
T TIGR03269 176 RVVLARQLAKEPFLFLADE-----------PTGTLDPQTAKLVHNALEEAV---KASGISMVLTSHWPEVIED 234 (520)
T ss_pred HHHHHHHHhcCCCEEEeeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHHHH
Confidence 4445557778999999999 899999999999999998873 2346889999999887654
No 426
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=5.7e-11 Score=101.96 Aligned_cols=112 Identities=19% Similarity=0.307 Sum_probs=78.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH----------------------------H
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------Q 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------~ 84 (270)
+|.+.+|..+.|.|+||+|||||+++|++.. ..+.+.+++.++. .
T Consensus 44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e 123 (271)
T PRK14238 44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYD 123 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHH
Confidence 3567899999999999999999999999853 3455544432110 0
Q ss_pred h------hhc-----------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 85 K------YIG-----------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 85 ~------~~~-----------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ..+ ..+++.+-.+.++...+|.++++||
T Consensus 124 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDE---------- 193 (271)
T PRK14238 124 NVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDE---------- 193 (271)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------
Confidence 0 000 0011122333345567899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. + +.+||++||+.+.+..
T Consensus 194 -Pt~~LD~~~~~~l~~~l~~~~----~-~~tiiivsH~~~~i~~ 231 (271)
T PRK14238 194 -PTSALDPISTLKVEELVQELK----K-DYSIIIVTHNMQQAAR 231 (271)
T ss_pred -CCCcCCHHHHHHHHHHHHHHH----c-CCEEEEEEcCHHHHHH
Confidence 899999999999999998873 2 4789999999887654
No 427
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.21 E-value=8.5e-11 Score=111.30 Aligned_cols=110 Identities=24% Similarity=0.341 Sum_probs=82.5
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|..+++.||+|+|||||++.+++.. ..+.+.+++.++..
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD 440 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC
Confidence 567899999999999999999999999843 44555555422100
Q ss_pred --------------------hh-------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 --------------------KY-------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 --------------------~~-------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.. .+ .++++.+-.+++|...+|.++++|| |+++.|.
T Consensus 441 ~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDE-----------pts~lD~ 509 (576)
T TIGR02204 441 ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDE-----------ATSALDA 509 (576)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeC-----------cccccCH
Confidence 00 00 2345667777788889999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
...+.+.+.+..+. .+.++|++||+++.+.
T Consensus 510 ~~~~~i~~~l~~~~-----~~~t~IiitH~~~~~~ 539 (576)
T TIGR02204 510 ESEQLVQQALETLM-----KGRTTLIIAHRLATVL 539 (576)
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEecchHHHH
Confidence 99888888887762 3578999999986653
No 428
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=8.7e-11 Score=99.70 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=44.8
Q ss_pred HHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 97 LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 97 ~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.++...+|.++++|| |+++.|......+.+++..+. + +.+||++||+.+.+..
T Consensus 159 ~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 159 CIARAIAVKPTMLLMDE-----------PCSALDPVATNVIENLIQELK----K-NFTIIVVTHSMKQAKK 213 (251)
T ss_pred HHHHHHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEeCCHHHHHh
Confidence 34445667899999999 889999999999999998873 2 5789999999887654
No 429
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.21 E-value=2.9e-10 Score=99.76 Aligned_cols=149 Identities=23% Similarity=0.330 Sum_probs=95.6
Q ss_pred cccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC---------------------
Q 024249 13 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--------------------- 71 (270)
Q Consensus 13 ~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--------------------- 71 (270)
++.|.++....+..+....- .-+..+||+||||+|||+++.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 57788888888887777432 1233599999999999999999998654
Q ss_pred ---CeEEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhh
Q 024249 72 ---CTFIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 144 (270)
Q Consensus 72 ---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l 144 (270)
..++.++.++..... .....++.+...... ....|++|||+|.+-. ..++.+ +..+
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nal---lk~l 133 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANAL---LKTL 133 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHH---HHHh
Confidence 356666665543321 122334444443322 3457999999987532 233333 3333
Q ss_pred cCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHH
Q 024249 145 DGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK 194 (270)
Q Consensus 145 ~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~ 194 (270)
. .......+|++||+++.+-+.++++. ..+.|++|+........+
T Consensus 134 E--ep~~~~~~il~~n~~~~il~tI~SRc---~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 134 E--EPPKNTRFILITNDPSKILPTIRSRC---QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred c--cCCCCeEEEEEcCChhhccchhhhcc---eeeecCCchHHHHHHHhh
Confidence 3 23457889999999998888777633 347787766655544443
No 430
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=6e-11 Score=100.70 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
-.+.+|....|.++++|| |+++.|......+.+++..+. . +.++|++||+.+.+...
T Consensus 157 v~laral~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sH~~~~~~~~ 213 (252)
T PRK14272 157 LCIARALAVEPEILLMDE-----------PTSALDPASTARIEDLMTDLK----K-VTTIIIVTHNMHQAARV 213 (252)
T ss_pred HHHHHHHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEeCCHHHHHHh
Confidence 344456667899999999 889999999999999998873 2 47899999998877653
No 431
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.21 E-value=8.9e-11 Score=113.70 Aligned_cols=109 Identities=19% Similarity=0.314 Sum_probs=81.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|..+.|.||+|||||||++.+++. +..+.+.+++.++..
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~ 574 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE 574 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC
Confidence 45788999999999999999999999984 344556555433200
Q ss_pred ---------------------h-------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ---------------------K-------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ---------------------~-------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. .++ .++++.+-.+++|...+|.|+++|| |+++.|
T Consensus 575 ~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE-----------~Ts~LD 643 (708)
T TIGR01193 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE-----------STSNLD 643 (708)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC-----------ccccCC
Confidence 0 000 2345567777788889999999999 888999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
......+.+.+..+ .+.++|++||+++.+.
T Consensus 644 ~~te~~i~~~L~~~------~~~T~IiitHr~~~~~ 673 (708)
T TIGR01193 644 TITEKKIVNNLLNL------QDKTIIFVAHRLSVAK 673 (708)
T ss_pred HHHHHHHHHHHHHh------cCCEEEEEecchHHHH
Confidence 99988888888654 2468999999986553
No 432
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.21 E-value=8.6e-10 Score=94.10 Aligned_cols=189 Identities=19% Similarity=0.285 Sum_probs=114.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---------CCeEEEEcchh------HHHh--------h-h-chhhHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGSE------LVQK--------Y-I-GEGSRMVRELFV 99 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---------~~~~i~i~~~~------~~~~--------~-~-~~~~~~~~~~~~ 99 (270)
...++||+|++|.|||++++.+.... .+|++.+.... +... + . ....+....++.
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 35669999999999999999998632 24566654321 1110 0 0 112223334455
Q ss_pred HHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC--CCC--chhhhcCCCCc
Q 024249 100 MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR--IDI--LDQALLRPGRI 175 (270)
Q Consensus 100 ~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~--~~~--l~~~l~r~~r~ 175 (270)
..+...+.+|+|||++.++.. ....++.+...|+.+. +.-.+.+|+.... ... -|+-+.+ ||
T Consensus 140 llr~~~vrmLIIDE~H~lLaG---------s~~~qr~~Ln~LK~L~---NeL~ipiV~vGt~~A~~al~~D~QLa~--RF 205 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAG---------SYRKQREFLNALKFLG---NELQIPIVGVGTREAYRALRTDPQLAS--RF 205 (302)
T ss_pred HHHHcCCcEEEeechHHHhcc---------cHHHHHHHHHHHHHHh---hccCCCeEEeccHHHHHHhccCHHHHh--cc
Confidence 566788999999999986532 2334667777777773 2335555554321 111 1233334 77
Q ss_pred ceEEEeCCC-CHHHHHHHHHHhhccCCCC--CCCCHH----HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 024249 176 DRKIEFPNP-NEESRLDILKIHSRRMNLM--RGIDLK----KIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFE 248 (270)
Q Consensus 176 ~~~i~~~~p-~~~~r~~il~~~~~~~~~~--~~~~~~----~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~ 248 (270)
+. +.+|.- ..++...++..+-..+++. +..... .|-..++|. -+++..++..|+..|++.+...|+.+.++
T Consensus 206 ~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-iG~l~~ll~~aA~~AI~sG~E~It~~~l~ 283 (302)
T PF05621_consen 206 EP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-IGELSRLLNAAAIAAIRSGEERITREILD 283 (302)
T ss_pred CC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHhcCCceecHHHHh
Confidence 42 344422 1234455677666555543 233333 445667774 45788999999999999999999998887
Q ss_pred H
Q 024249 249 M 249 (270)
Q Consensus 249 ~ 249 (270)
.
T Consensus 284 ~ 284 (302)
T PF05621_consen 284 K 284 (302)
T ss_pred h
Confidence 6
No 433
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.21 E-value=1.8e-11 Score=100.40 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=84.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHHHhh-----------------------------hc
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQKY-----------------------------IG 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~~~~-----------------------------~~ 88 (270)
+|.+.+++.+.|.||||+||||+.+.|.+ .++.+.+.+.+.++.... .+
T Consensus 24 sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va 103 (250)
T COG0411 24 SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVG 103 (250)
T ss_pred eEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHH
Confidence 45688999999999999999999999997 345666666665431100 00
Q ss_pred -----------------------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcc
Q 024249 89 -----------------------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 121 (270)
Q Consensus 89 -----------------------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~ 121 (270)
...++-+--+++|.+..|.+|+|||
T Consensus 104 ~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDE-------- 175 (250)
T COG0411 104 AHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDE-------- 175 (250)
T ss_pred hhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecC--------
Confidence 0011112223446778999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 122 MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
|.++.++.....+.+++..+. ...+++|+++-|+++.+-..
T Consensus 176 ---PaAGln~~e~~~l~~~i~~i~---~~~g~tillIEHdM~~Vm~l 216 (250)
T COG0411 176 ---PAAGLNPEETEELAELIRELR---DRGGVTILLIEHDMKLVMGL 216 (250)
T ss_pred ---ccCCCCHHHHHHHHHHHHHHH---hcCCcEEEEEEeccHHHhhh
Confidence 888999999999999999984 34579999999999876543
No 434
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.21 E-value=8.7e-11 Score=110.45 Aligned_cols=110 Identities=25% Similarity=0.437 Sum_probs=80.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH-----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 83 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~----------------------------------- 83 (270)
+.+++|+.+.|.||+|+|||||++.+++.. ..+.+.+++.++.
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~ 418 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGEN 418 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCC
Confidence 557899999999999999999999999843 3344444332110
Q ss_pred -------------------Hhh-------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 84 -------------------QKY-------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 84 -------------------~~~-------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
... .+ .++++.+-.+++|...+|.++++|| |+++.|.
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDE-----------pts~LD~ 487 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE-----------PNSNLDE 487 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccccCH
Confidence 000 00 2344566777778889999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.....+.+.+..+. ..+.++|++||+.+.+
T Consensus 488 ~~~~~i~~~l~~~~----~~~~tvi~ith~~~~~ 517 (544)
T TIGR01842 488 EGEQALANAIKALK----ARGITVVVITHRPSLL 517 (544)
T ss_pred HHHHHHHHHHHHHh----hCCCEEEEEeCCHHHH
Confidence 99998888887762 2357899999998643
No 435
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.20 E-value=9.1e-11 Score=113.37 Aligned_cols=110 Identities=21% Similarity=0.354 Sum_probs=83.9
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|..+.|+||+|+|||||++.+++. +..+.+.+++.++..
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~ 557 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCC
Confidence 45788999999999999999999999984 445666665533210
Q ss_pred --------------------hh-------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 --------------------KY-------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 --------------------~~-------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.. .+ .++++.+-.+++|...+|.++++|| |+++.|.
T Consensus 558 ~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDE-----------pts~LD~ 626 (694)
T TIGR01846 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDE-----------ATSALDY 626 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CCcCCCH
Confidence 00 00 2345567777888889999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.....+.+.+..+. .+.++|++||+++.+.
T Consensus 627 ~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~~ 656 (694)
T TIGR01846 627 ESEALIMRNMREIC-----RGRTVIIIAHRLSTVR 656 (694)
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEeCChHHHH
Confidence 99999998888762 3578999999987664
No 436
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.20 E-value=1e-10 Score=99.59 Aligned_cols=112 Identities=17% Similarity=0.129 Sum_probs=79.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.++..+.|.||+|+|||||+++|++.. ..+.+.+++.++..
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~ 120 (257)
T cd03288 41 KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK 120 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCC
Confidence 3567899999999999999999999999842 23333332211100
Q ss_pred ----------------h----hh-------------chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ----------------K----YI-------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ----------------~----~~-------------~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
. .+ -...++.+..+.+|....|.++++|| |+.+.|+
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE-----------Pt~gLD~ 189 (257)
T cd03288 121 CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDE-----------ATASIDM 189 (257)
T ss_pred CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCH
Confidence 0 00 01123445666777788999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.....+.+++..+. .+.++|++||+++.+..
T Consensus 190 ~~~~~l~~~l~~~~-----~~~tiii~sh~~~~~~~ 220 (257)
T cd03288 190 ATENILQKVVMTAF-----ADRTVVTIAHRVSTILD 220 (257)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEEEecChHHHHh
Confidence 99988888887752 25789999999887753
No 437
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.20 E-value=7.2e-11 Score=100.84 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=85.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-------eEEEEcchhHHH----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVSGSELVQ---------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~-------~~i~i~~~~~~~---------------------------- 84 (270)
+|.+..++.+.|+|.||||||+++++|.+.+.. +-+.+++.++..
T Consensus 25 s~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv 104 (316)
T COG0444 25 SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPV 104 (316)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCCh
Confidence 467889999999999999999999999985531 234444432100
Q ss_pred --------------------------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCccc
Q 024249 85 --------------------------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIG 118 (270)
Q Consensus 85 --------------------------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~ 118 (270)
.|+. .++.+.+.+++.|....|.+|+.||
T Consensus 105 ~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADE----- 179 (316)
T COG0444 105 MTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADE----- 179 (316)
T ss_pred hhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCC-----
Confidence 0000 1222345566668889999999999
Q ss_pred CcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 119 SARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
|+..+|...+.++.++|.++. ...+..+|++|||+..+...
T Consensus 180 ------PTTALDvt~QaqIl~Ll~~l~---~e~~~aiilITHDl~vva~~ 220 (316)
T COG0444 180 ------PTTALDVTVQAQILDLLKELQ---REKGTALILITHDLGVVAEI 220 (316)
T ss_pred ------CcchhhHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHHh
Confidence 899999999999999999985 35688999999998876654
No 438
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.20 E-value=1e-10 Score=110.86 Aligned_cols=110 Identities=20% Similarity=0.319 Sum_probs=81.1
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV----------------------------------- 83 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~----------------------------------- 83 (270)
+.+++|..+.|.||+|+|||||++.+++. +..+.+.+++.++.
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~ 435 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG 435 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC
Confidence 55789999999999999999999999974 23344444332110
Q ss_pred -------------------Hhh-------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 84 -------------------QKY-------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 84 -------------------~~~-------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
... .+ .++++.+-.+++|...+|.++++|| |+++.|.
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDE-----------pts~LD~ 504 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDE-----------ATSALDV 504 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CccCCCH
Confidence 000 00 2344556677778889999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
...+.+.+.+..+. .+.++|++||+++.+.
T Consensus 505 ~~~~~i~~~l~~~~-----~~~tvI~isH~~~~~~ 534 (585)
T TIGR01192 505 ETEARVKNAIDALR-----KNRTTFIIAHRLSTVR 534 (585)
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEEcChHHHH
Confidence 99999988887762 3678999999987664
No 439
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=7.3e-11 Score=100.08 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+-.+.+|...+|.++++|| |.++.|......+.+++..+. + +.+||++||+.+.+...
T Consensus 154 rv~laral~~~p~llllDE-----------P~~gLD~~~~~~l~~~l~~~~----~-~~tiii~sh~~~~~~~~ 211 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDE-----------PCSALDPISTTKIEDLIHKLK----E-DYTIVIVTHNMQQATRV 211 (250)
T ss_pred HHHHHHHHHcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEECCHHHHHhh
Confidence 3444556678899999999 889999999999999998873 2 47899999998877653
No 440
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=7.1e-11 Score=102.06 Aligned_cols=112 Identities=20% Similarity=0.327 Sum_probs=78.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchhHH----------------------------H
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELV----------------------------Q 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~~~----------------------------~ 84 (270)
+|.+.++..+.|.||+|+|||||+++|++.. ..+-+.+++.++. .
T Consensus 59 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 138 (285)
T PRK14254 59 SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYD 138 (285)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHH
Confidence 3567899999999999999999999999753 3444443321110 0
Q ss_pred h-h----------------------hc----------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 85 K-Y----------------------IG----------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 85 ~-~----------------------~~----------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
. . .+ ..+++.+-.+.+|...+|.||++|| |
T Consensus 139 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDE-----------P 207 (285)
T PRK14254 139 NVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE-----------P 207 (285)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------C
Confidence 0 0 00 0012223444456667899999999 8
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++.|......+.+++..+. ++ .+||++||+++.+..
T Consensus 208 ts~LD~~~~~~l~~~L~~~~----~~-~tiii~tH~~~~i~~ 244 (285)
T PRK14254 208 ASALDPVATSKIEDLIEELA----EE-YTVVIVTHNMQQAAR 244 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cC-CEEEEEeCCHHHHHh
Confidence 99999999999999998873 22 589999999876543
No 441
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.20 E-value=3.7e-11 Score=112.12 Aligned_cols=113 Identities=17% Similarity=0.234 Sum_probs=80.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH----------------------------HHh-hh-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------VQK-YI- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------~~~-~~- 87 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ ... ..
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIG 104 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhc
Confidence 456788999999999999999999999973 2233333322110 000 00
Q ss_pred --------c---------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCC
Q 024249 88 --------G---------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126 (270)
Q Consensus 88 --------~---------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~ 126 (270)
+ ..+++.+-.+.+|....|.++++|| |+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE-----------Pt 173 (510)
T PRK09700 105 RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE-----------PT 173 (510)
T ss_pred cccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CC
Confidence 0 1112334555567778999999999 89
Q ss_pred CCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 127 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 127 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
++.|...+..+.+++..+. ..+.+||++||+++.+..
T Consensus 174 ~~LD~~~~~~l~~~l~~l~----~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 174 SSLTNKEVDYLFLIMNQLR----KEGTAIVYISHKLAEIRR 210 (510)
T ss_pred CCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHH
Confidence 9999999999999999883 236789999999887654
No 442
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.20 E-value=4.4e-11 Score=92.19 Aligned_cols=113 Identities=35% Similarity=0.443 Sum_probs=68.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh--hhchhh------HHHHHHHHHHHhcCCeEEEEcCCCcccC
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK--YIGEGS------RMVRELFVMAREHAPSIIFMDEIDSIGS 119 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~--~~~~~~------~~~~~~~~~a~~~~p~il~lDeid~l~~ 119 (270)
.|+|+||||||||++++.+|...+.+++.+.+...... ..+... ......+..+. ..+.+++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 48999999999999999999999999988877642211 111000 00000000011 16789999998762
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhhcCC-------c-CCC------CeEEEEEeCCCC----CchhhhcCCCCc
Q 024249 120 ARMESGSGNGDSEVQRTMLELLNQLDGF-------E-ASN------KIKVLMATNRID----ILDQALLRPGRI 175 (270)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~-------~-~~~------~~~vi~tt~~~~----~l~~~l~r~~r~ 175 (270)
++.....+..+++.-.-. . ... +..+|+|+|..+ .+++++.+ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 255566666666542110 0 111 378999999988 78888887 65
No 443
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.20 E-value=7.9e-10 Score=102.86 Aligned_cols=226 Identities=19% Similarity=0.194 Sum_probs=130.2
Q ss_pred cccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE----cchhHHHhhhc
Q 024249 13 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV----SGSELVQKYIG 88 (270)
Q Consensus 13 ~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i----~~~~~~~~~~~ 88 (270)
.|.|.+..+..+.-.+..--. +..-....+....++||+|+||+|||+++++++.......+.. ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 466666666555544433110 0001111233345799999999999999999998654332211 11111110000
Q ss_pred h---hhHHHH-HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc------CC--cCCCCeEEE
Q 024249 89 E---GSRMVR-ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD------GF--EASNKIKVL 156 (270)
Q Consensus 89 ~---~~~~~~-~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~------~~--~~~~~~~vi 156 (270)
. ++..++ -.+. .....+++|||+|.+ +...+..+.+.+++-. +. ....+..||
T Consensus 283 ~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l------------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 283 DPETREFTLEGGALV---LADNGVCCIDEFDKM------------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred ccCcceEEecCccEE---ecCCCEEEEechhhC------------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 0 000000 0011 123459999998875 2345666777665311 10 012356788
Q ss_pred EEeCCCC-------------CchhhhcCCCCcceEEEe-CCCCHHHHHHHHHHhhccCC---------C-----------
Q 024249 157 MATNRID-------------ILDQALLRPGRIDRKIEF-PNPNEESRLDILKIHSRRMN---------L----------- 202 (270)
Q Consensus 157 ~tt~~~~-------------~l~~~l~r~~r~~~~i~~-~~p~~~~r~~il~~~~~~~~---------~----------- 202 (270)
+|+|... .+++++++ |||..+.+ ..|+.+...+|.+..+.... .
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 425 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRK 425 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHH
Confidence 8888542 57888888 99876554 68899888888876432110 0
Q ss_pred ---------CCCCC---HHHHH-----HH----------cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 024249 203 ---------MRGID---LKKIA-----EK----------MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 255 (270)
Q Consensus 203 ---------~~~~~---~~~la-----~~----------~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~ 255 (270)
.+.++ .+.+. .+ ..+.|++.+..+++-|...|.-+.+..++.+|++.|+.-+.
T Consensus 426 yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 426 YIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 00011 01110 11 12568899999999999899888999999999999998774
Q ss_pred h
Q 024249 256 K 256 (270)
Q Consensus 256 ~ 256 (270)
.
T Consensus 506 ~ 506 (509)
T smart00350 506 E 506 (509)
T ss_pred H
Confidence 4
No 444
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.20 E-value=4.2e-11 Score=111.48 Aligned_cols=113 Identities=16% Similarity=0.230 Sum_probs=80.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH----------------------------HHh----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------VQK---- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------~~~---- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ ...
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLG 103 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhc
Confidence 456788999999999999999999999974 2333333322110 000
Q ss_pred ----h-----------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 86 ----Y-----------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 86 ----~-----------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. +. .++++.+-.+.+|....|.++++|| |+++.|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE-----------Pt~~LD 172 (501)
T PRK11288 104 QLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE-----------PTSSLS 172 (501)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC-----------CCCCCC
Confidence 0 00 1223345555667778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
......+.+++..+. +.+.+||++||+++.+..
T Consensus 173 ~~~~~~l~~~l~~~~----~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 173 AREIEQLFRVIRELR----AEGRVILYVSHRMEEIFA 205 (501)
T ss_pred HHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHH
Confidence 999999999998873 246789999999887654
No 445
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.19 E-value=8.5e-11 Score=96.18 Aligned_cols=116 Identities=17% Similarity=0.329 Sum_probs=73.8
Q ss_pred HHHhcCCCCCceEEEEcCCCchHHHHHHHHHHh-----cCCeE-------------EEEcchh-HHHh--hhchhhHHHH
Q 024249 37 LFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTF-------------IRVSGSE-LVQK--YIGEGSRMVR 95 (270)
Q Consensus 37 ~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~-----~~~~~-------------i~i~~~~-~~~~--~~~~~~~~~~ 95 (270)
...++.+..++.++|+||||+||||++|.|++. .++++ ..+...+ +... ........+.
T Consensus 16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~ 95 (199)
T cd03283 16 VANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLK 95 (199)
T ss_pred ecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHH
Confidence 455666777889999999999999999999862 23321 0111000 0000 0011113455
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHH-HHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l-~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+++.+....|+++++|| |.++.|+.....+ ..++..+. +.+.++|++||+.+.+..
T Consensus 96 ~iL~~~~~~~p~llllDE-----------p~~glD~~~~~~l~~~ll~~l~----~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 96 EIVEKAKKGEPVLFLLDE-----------IFKGTNSRERQAASAAVLKFLK----NKNTIGIISTHDLELADL 153 (199)
T ss_pred HHHHhccCCCCeEEEEec-----------ccCCCCHHHHHHHHHHHHHHHH----HCCCEEEEEcCcHHHHHh
Confidence 666655445899999999 7778887766544 45666663 236789999999876643
No 446
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.19 E-value=9.8e-11 Score=110.74 Aligned_cols=110 Identities=29% Similarity=0.411 Sum_probs=83.5
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------------- 84 (270)
+.+++|+.+.|.||+|+|||||++.+++. +..+.+.+++.++..
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~ 440 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN 440 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc
Confidence 45789999999999999999999999984 345555555432100
Q ss_pred ----------------hh----------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 85 ----------------KY----------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 85 ----------------~~----------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
.+ ++ .++++.+-.+++|...+|.++++|| |+++.|+.
T Consensus 441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE-----------~ts~lD~~ 509 (574)
T PRK11160 441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE-----------PTEGLDAE 509 (574)
T ss_pred cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHH
Confidence 00 00 2345667778888889999999999 88999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
....+.+.+..+. ++.++|++||+++.+.
T Consensus 510 t~~~i~~~l~~~~-----~~~tviiitHr~~~~~ 538 (574)
T PRK11160 510 TERQILELLAEHA-----QNKTVLMITHRLTGLE 538 (574)
T ss_pred HHHHHHHHHHHHc-----CCCEEEEEecChhHHH
Confidence 9998888887762 3578999999987664
No 447
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.19 E-value=1e-10 Score=91.82 Aligned_cols=108 Identities=21% Similarity=0.384 Sum_probs=83.3
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHH--HhcCCeEEEEcchhHH-------------------------------------
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVA--HHTDCTFIRVSGSELV------------------------------------- 83 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia--~~~~~~~i~i~~~~~~------------------------------------- 83 (270)
-..+..|-|.|.+||||||++|||. ..+..+.+.+++..+.
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm 108 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHM 108 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHH
Confidence 3567779999999999999999997 3455566665554320
Q ss_pred --------------------------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 --------------------------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 --------------------------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
..|+. .+.++.+..+++|.+..|.++++||
T Consensus 109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDE---------- 178 (256)
T COG4598 109 TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDE---------- 178 (256)
T ss_pred HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecC----------
Confidence 00111 3456678889999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
|++..|++........+..+ ...+.+++..||.+...
T Consensus 179 -PTSALDPElVgEVLkv~~~L----AeEgrTMv~VTHEM~FA 215 (256)
T COG4598 179 -PTSALDPELVGEVLKVMQDL----AEEGRTMVVVTHEMGFA 215 (256)
T ss_pred -CcccCCHHHHHHHHHHHHHH----HHhCCeEEEEeeehhHH
Confidence 89999999999999999888 45678899999987644
No 448
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=7.3e-11 Score=103.83 Aligned_cols=111 Identities=23% Similarity=0.306 Sum_probs=80.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcC-------CeEEEEcchhHH------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSELV------------------------------ 83 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-------~~~i~i~~~~~~------------------------------ 83 (270)
|.+.+|..+.|.||+|||||||+++|++... .+.+.+++.++.
T Consensus 103 ~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eN 182 (329)
T PRK14257 103 LDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDN 182 (329)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHH
Confidence 5678899999999999999999999998542 444443322110
Q ss_pred ---Hhhh------------------------------c------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCC
Q 024249 84 ---QKYI------------------------------G------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124 (270)
Q Consensus 84 ---~~~~------------------------------~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~ 124 (270)
.... + ..+++.+-.+++|...+|.||++||
T Consensus 183 i~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDE----------- 251 (329)
T PRK14257 183 VAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDE----------- 251 (329)
T ss_pred HHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeC-----------
Confidence 0000 0 1123344555667778999999999
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 125 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|......+.+++..+. + +.++|++||+++.+..
T Consensus 252 Pts~LD~~~~~~i~~~i~~l~----~-~~Tii~iTH~l~~i~~ 289 (329)
T PRK14257 252 PTSALDPIATAKIEELILELK----K-KYSIIIVTHSMAQAQR 289 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHHHHH
Confidence 889999999998999998773 2 4789999999887765
No 449
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.19 E-value=5.4e-11 Score=111.45 Aligned_cols=59 Identities=27% Similarity=0.432 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+++|....|.+|++|| |+++.|+.....+.+++..+. .+.+.+||++||+++.+..
T Consensus 164 rv~iAraL~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~~~ 222 (529)
T PRK15134 164 RVMIAMALLTRPELLIADE-----------PTTALDVSVQAQILQLLRELQ---QELNMGLLFITHNLSIVRK 222 (529)
T ss_pred HHHHHHHHhcCCCEEEEcC-----------CCCccCHHHHHHHHHHHHHHH---HhcCCeEEEEcCcHHHHHH
Confidence 3345556678899999999 899999999999999998873 2236789999999887654
No 450
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=9e-11 Score=100.21 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
-.+.++....|.++++|| |+++.|......+.+++..+. ...+.+||++||+++.+...
T Consensus 159 v~laral~~~p~vllLDE-----------P~~~LD~~~~~~l~~~l~~l~---~~~~~tiiivsH~~~~i~~~ 217 (261)
T PRK14258 159 LCIARALAVKPKVLLMDE-----------PCFGLDPIASMKVESLIQSLR---LRSELTMVIVSHNLHQVSRL 217 (261)
T ss_pred HHHHHHHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH---HhCCCEEEEEECCHHHHHHh
Confidence 334445667899999999 889999999999999998763 22367899999998877653
No 451
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.18 E-value=6.1e-11 Score=123.44 Aligned_cols=113 Identities=16% Similarity=0.277 Sum_probs=83.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH--------------------------------h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------K 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------~ 85 (270)
++++.+|+.+.|.||||+|||||+|.|++. +..+.+.+++.++.. .
T Consensus 1959 Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~ 2038 (2272)
T TIGR01257 1959 CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR 2038 (2272)
T ss_pred EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHH
Confidence 356789999999999999999999999984 345555554422100 0
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ .++++.+-.++.|...+|.||++|| |+++.|+..++
T Consensus 2039 l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE-----------PTsGLDp~sr~ 2107 (2272)
T TIGR01257 2039 LRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE-----------PTTGMDPQARR 2107 (2272)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCCCCCHHHHH
Confidence 000 1122233445667778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. +.+.+||++||+++.+..
T Consensus 2108 ~l~~lL~~l~----~~g~TIILtTH~mee~e~ 2135 (2272)
T TIGR01257 2108 MLWNTIVSII----REGRAVVLTSHSMEECEA 2135 (2272)
T ss_pred HHHHHHHHHH----hCCCEEEEEeCCHHHHHH
Confidence 9999998873 236789999999887654
No 452
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.2e-10 Score=103.49 Aligned_cols=120 Identities=24% Similarity=0.423 Sum_probs=90.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCeEEEEcchhHHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~i~~~~~~~---------------------------------- 84 (270)
+|.++.|+.+.+.|+|||||||++|.+-+-. ..+-+.+++.++..
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s 451 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS 451 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC
Confidence 4567889999999999999999999999733 45667777665411
Q ss_pred --------------------hh-------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 --------------------KY-------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 --------------------~~-------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
+. +| .++++++-.+.+|.-.+|.|+++|| ++++.|.
T Consensus 452 as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE-----------aTS~LD~ 520 (591)
T KOG0057|consen 452 ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE-----------ATSALDS 520 (591)
T ss_pred cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC-----------cccccch
Confidence 00 11 3456677788888888999999999 7889999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeC
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 182 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~ 182 (270)
...+.+...+... ..+.++|+..|+.+.++ .||+.+.+.
T Consensus 521 ~TE~~i~~~i~~~-----~~~rTvI~IvH~l~ll~-------~~DkI~~l~ 559 (591)
T KOG0057|consen 521 ETEREILDMIMDV-----MSGRTVIMIVHRLDLLK-------DFDKIIVLD 559 (591)
T ss_pred hhHHHHHHHHHHh-----cCCCeEEEEEecchhHh-------cCCEEEEEE
Confidence 8888777777652 24788999999988876 456555544
No 453
>PLN03211 ABC transporter G-25; Provisional
Probab=99.18 E-value=1.2e-10 Score=111.37 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=78.1
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcC----CeEEEEcchhHH----------------------------Hh-h-
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD----CTFIRVSGSELV----------------------------QK-Y- 86 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~----~~~i~i~~~~~~----------------------------~~-~- 86 (270)
+.+.+|+.+.|.||||+|||||+++|++... .+.+.+++.++. .. .
T Consensus 89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~ 168 (659)
T PLN03211 89 GMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLR 168 (659)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhC
Confidence 4578899999999999999999999998532 344554442210 00 0
Q ss_pred -hc------------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 87 -IG------------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 87 -~~------------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
.. .++++.+-.+..+...+|.|+++|| |+++.
T Consensus 169 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE-----------PtsgL 237 (659)
T PLN03211 169 LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE-----------PTSGL 237 (659)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC-----------CCCCc
Confidence 00 0112233444456667899999999 89999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
|+.....+.+++..+. +.+.+||+++|+++.
T Consensus 238 D~~~~~~l~~~L~~l~----~~g~TvI~~sH~~~~ 268 (659)
T PLN03211 238 DATAAYRLVLTLGSLA----QKGKTIVTSMHQPSS 268 (659)
T ss_pred CHHHHHHHHHHHHHHH----hCCCEEEEEecCCCH
Confidence 9999999999998873 247899999999873
No 454
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1e-10 Score=100.70 Aligned_cols=112 Identities=19% Similarity=0.331 Sum_probs=78.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-------CeEEEEcchhH---------------------------H--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSEL---------------------------V-- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-------~~~i~i~~~~~---------------------------~-- 83 (270)
+|.+.++..+.|.||||+|||||+++|++... .+-+.+++..+ .
T Consensus 41 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 120 (276)
T PRK14271 41 SMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDN 120 (276)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHH
Confidence 35678999999999999999999999998532 44444432110 0
Q ss_pred -H--hh-h---c--------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCC
Q 024249 84 -Q--KY-I---G--------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124 (270)
Q Consensus 84 -~--~~-~---~--------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~ 124 (270)
. .. . . ...++.+-.+.+|....|.++++||
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDE----------- 189 (276)
T PRK14271 121 VLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDE----------- 189 (276)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC-----------
Confidence 0 00 0 0 0112233445556678899999999
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 125 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|...+..+.+++..+. . ..+||++||+.+.+..
T Consensus 190 Pt~~LD~~~~~~l~~~L~~~~----~-~~tiiivsH~~~~~~~ 227 (276)
T PRK14271 190 PTSALDPTTTEKIEEFIRSLA----D-RLTVIIVTHNLAQAAR 227 (276)
T ss_pred CcccCCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHHHHH
Confidence 889999999999999998873 2 3689999999887654
No 455
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.17 E-value=1.4e-10 Score=112.34 Aligned_cols=109 Identities=23% Similarity=0.387 Sum_probs=79.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
++.+++|+.+.|+||+|+||||+++.|++. +..+.+.+++.++..
T Consensus 501 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~ 580 (711)
T TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT 580 (711)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC
Confidence 356789999999999999999999999984 345566655433210
Q ss_pred ---------------------h-------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ---------------------K-------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ---------------------~-------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. ..+ .++++.+-.+++|...+|.|+++|| ++++.|
T Consensus 581 ~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDE-----------pTSaLD 649 (711)
T TIGR00958 581 DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDE-----------ATSALD 649 (711)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEc-----------cccccC
Confidence 0 000 2345667778888889999999999 788999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
......+.+ .. ...+.++|++||+++.+.
T Consensus 650 ~~te~~i~~-~~------~~~~~TvIiItHrl~~i~ 678 (711)
T TIGR00958 650 AECEQLLQE-SR------SRASRTVLLIAHRLSTVE 678 (711)
T ss_pred HHHHHHHHH-hh------ccCCCeEEEEeccHHHHH
Confidence 988777666 21 124678999999986543
No 456
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.17 E-value=6.6e-11 Score=112.80 Aligned_cols=114 Identities=21% Similarity=0.317 Sum_probs=80.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH--------------------------------HH-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL--------------------------------VQ- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~--------------------------------~~- 84 (270)
+|.+.+|..+.|.||||||||||+++|++. +..+.+.+++.++ ..
T Consensus 344 s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~ 423 (623)
T PRK10261 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDS 423 (623)
T ss_pred EeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHH
Confidence 456788999999999999999999999973 2233333322110 00
Q ss_pred --h---hhc--------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCC
Q 024249 85 --K---YIG--------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG 127 (270)
Q Consensus 85 --~---~~~--------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~ 127 (270)
. ..+ .++++.+-.+++|....|.+|++|| |++
T Consensus 424 l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDE-----------Pts 492 (623)
T PRK10261 424 IMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADE-----------AVS 492 (623)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------Ccc
Confidence 0 000 1122334455557778999999999 899
Q ss_pred CCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 128 NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 128 ~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.|...+..+.+++..+. ...+.+||++||+++.+..
T Consensus 493 ~LD~~~~~~i~~ll~~l~---~~~g~tvi~isHdl~~v~~ 529 (623)
T PRK10261 493 ALDVSIRGQIINLLLDLQ---RDFGIAYLFISHDMAVVER 529 (623)
T ss_pred cCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 999999999999998873 2346889999999887654
No 457
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.17 E-value=9.4e-11 Score=108.90 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 94 VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 94 ~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+-.++++...+|.|+++|| |+++.|......+.+++..+. ..+.+||++||+.+.+..
T Consensus 398 qrv~la~al~~~p~illLDE-----------Pt~gLD~~~~~~~~~~l~~l~----~~~~tvi~vsHd~~~~~~ 456 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDE-----------PTRGIDVGAKFEIYQLIAELA----KKDKGIIIISSEMPELLG 456 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcC-----------CCcccChhHHHHHHHHHHHHH----HCCCEEEEECCChHHHHh
Confidence 44555667778999999999 899999999999999998873 246889999999887754
No 458
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.17 E-value=2.2e-10 Score=97.32 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.++....|.++++|| |+++.|......+..++..+. +.+.+||++||+.+.+..
T Consensus 147 rv~laral~~~p~illlDE-----------Pts~LD~~~~~~l~~~l~~l~----~~~~tIIiiSHd~~~~~~ 204 (255)
T cd03236 147 RVAIAAALARDADFYFFDE-----------PSSYLDIKQRLNAARLIRELA----EDDNYVLVVEHDLAVLDY 204 (255)
T ss_pred HHHHHHHHHhCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hcCCEEEEEECCHHHHHH
Confidence 3444556667899999999 899999999999999998873 235789999999876654
No 459
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.6e-10 Score=106.56 Aligned_cols=197 Identities=25% Similarity=0.351 Sum_probs=124.2
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCC----CCceEEEEcCCCchHHHHHHHHHHhcC---CeEEEEcchhHHH
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIA----QPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSELVQ 84 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~----~~~~ilL~Gp~GtGKTtl~~~ia~~~~---~~~i~i~~~~~~~ 84 (270)
+.|.|+++.++.+.+.|.... .|+. |-..+|+.||+|+|||-|++++|..+. ..+++++.+++..
T Consensus 491 ~rViGQd~AV~avs~aIrraR--------aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRAR--------AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 579999999999999987642 2332 234688899999999999999999765 7889999988643
Q ss_pred h------------hhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCC--
Q 024249 85 K------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS-- 150 (270)
Q Consensus 85 ~------------~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-- 150 (270)
+ |+|..+ -..+-+..+....|||+|||+++ ..+...+.|++.++.-.=...+
T Consensus 563 kHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK------------AHpdV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK------------AHPDVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh------------cCHHHHHHHHHHhcCCeeecCCCC
Confidence 2 222211 11222334445568999999886 4566777777777642100011
Q ss_pred ----CCeEEEEEeCCCCC--------------------c--------hhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhc
Q 024249 151 ----NKIKVLMATNRIDI--------------------L--------DQALLRPGRIDRKIEFPNPNEESRLDILKIHSR 198 (270)
Q Consensus 151 ----~~~~vi~tt~~~~~--------------------l--------~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~ 198 (270)
.+.+||+|||-=.. + .|.++. |+|..|.|.+.+.+...+|....+.
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred EEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 14567788773110 0 012233 7899999999999999999876654
Q ss_pred cCCC---CCCCC-------HHHHHHHc--CCCCHHHHHHHHHHHHH
Q 024249 199 RMNL---MRGID-------LKKIAEKM--NGASGAELKAVCTEAGM 232 (270)
Q Consensus 199 ~~~~---~~~~~-------~~~la~~~--~g~~~~dl~~l~~~a~~ 232 (270)
.... ..++. .+.+++.. +.|-++-|+.++++-..
T Consensus 707 ~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~ 752 (786)
T COG0542 707 RLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIE 752 (786)
T ss_pred HHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHH
Confidence 3211 11221 23455553 24556777776665443
No 460
>PRK04132 replication factor C small subunit; Provisional
Probab=99.16 E-value=1.6e-09 Score=104.77 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=109.9
Q ss_pred CceEEEEc--CCCchHHHHHHHHHHhc-----CCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhc------CCeEEEEc
Q 024249 46 PKGVLLYG--PPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREH------APSIIFMD 112 (270)
Q Consensus 46 ~~~ilL~G--p~GtGKTtl~~~ia~~~-----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~------~p~il~lD 112 (270)
+-.-+..| |++.||||+|+++|++. +..++.+++++..+. ..++..+..+... ...|++||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 34456678 99999999999999986 457899999874221 2344444433322 23699999
Q ss_pred CCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHH
Q 024249 113 EIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDI 192 (270)
Q Consensus 113 eid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~i 192 (270)
|+|.+- ...+..+...++.- ...+.+|++||++..+.+.+++ |. ..+.|++|+.++-...
T Consensus 638 EaD~Lt------------~~AQnALLk~lEep-----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 638 EADALT------------QDAQQALRRTMEMF-----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred CcccCC------------HHHHHHHHHHhhCC-----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHH
Confidence 999862 23455555555442 3567899999999999988887 43 5689999999988888
Q ss_pred HHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q 024249 193 LKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAG 231 (270)
Q Consensus 193 l~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~ 231 (270)
++..+..... ..+..+..++..+.| +.+...++++.++
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 8877664432 233457788888888 4455545556544
No 461
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.16 E-value=7e-11 Score=109.98 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=81.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC----CeEEEEcchhHH--------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD----CTFIRVSGSELV-------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~----~~~i~i~~~~~~-------------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++... .+.+.+++.++.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 100 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIF 100 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHH
Confidence 45678899999999999999999999998532 454544331100
Q ss_pred -Hh-h---------------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCC
Q 024249 84 -QK-Y---------------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126 (270)
Q Consensus 84 -~~-~---------------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~ 126 (270)
.. . ++ ..+++.+-.+++|....|.++++|| |+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDE-----------Pt 169 (500)
T TIGR02633 101 LGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDE-----------PS 169 (500)
T ss_pred hhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC-----------CC
Confidence 00 0 00 0112234445556778899999999 89
Q ss_pred CCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 127 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 127 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
++.|......+.+++..+. +.+.+||++||+.+.+..
T Consensus 170 ~~LD~~~~~~l~~~l~~l~----~~g~tviiitHd~~~~~~ 206 (500)
T TIGR02633 170 SSLTEKETEILLDIIRDLK----AHGVACVYISHKLNEVKA 206 (500)
T ss_pred CCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCcHHHHHH
Confidence 9999999999999998873 346789999999887654
No 462
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.15 E-value=6.4e-11 Score=104.19 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 94 VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 94 ~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+-.+.+|...+|.++++|| |.++.|...+..+.+++..+. ...+.++|++||+.+.+..
T Consensus 107 qRvalaraL~~~p~lllLDE-----------P~s~LD~~~~~~l~~~l~~l~---~~~g~tiiivTHd~~e~~~ 166 (325)
T TIGR01187 107 QRVALARALVFKPKILLLDE-----------PLSALDKKLRDQMQLELKTIQ---EQLGITFVFVTHDQEEAMT 166 (325)
T ss_pred HHHHHHHHHHhCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 45555667778999999999 899999999999999998873 2347889999999876543
No 463
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=3.8e-10 Score=99.39 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=97.7
Q ss_pred CcccccC-cHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe---------------
Q 024249 10 TYDMIGG-LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------------- 73 (270)
Q Consensus 10 ~~~~i~G-~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~--------------- 73 (270)
.|++|.| .+..++.+...+..- ..+..+||+||+|+||+++++.+|+...|.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4788888 888888888887642 346778999999999999999999864332
Q ss_pred ---------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHH
Q 024249 74 ---------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 140 (270)
Q Consensus 74 ---------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~ 140 (270)
+..+... +.. .....++++...+. .....|++|||+|.+ +....+. +
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~------------~~~a~Na---L 130 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM------------TASAANS---L 130 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh------------CHHHHHH---H
Confidence 1122111 000 11234444444332 234579999998765 2233444 4
Q ss_pred HHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHH
Q 024249 141 LNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI 195 (270)
Q Consensus 141 l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~ 195 (270)
++.++. ......+|++|++++.+.+.+++++ ..+++++|+.++-...++.
T Consensus 131 LK~LEE--Pp~~~~~Il~t~~~~~ll~TIrSRc---~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 131 LKFLEE--PSGGTTAILLTENKHQILPTILSRC---QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHhcC--CCCCceEEEEeCChHhCcHHHHhhc---eeeeCCCCCHHHHHHHHHH
Confidence 444432 3456778888888899999888744 4588999999887776653
No 464
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.7e-10 Score=89.17 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=79.5
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHH--------------------------------Hhh
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELV--------------------------------QKY 86 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~--------------------------------~~~ 86 (270)
|.+.++..+.+.||||+|||||+|.||+ ++..+-+++++..+. ...
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~ 102 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRF 102 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 4578899999999999999999999998 455666666532210 000
Q ss_pred h-------------------------ch--hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH
Q 024249 87 I-------------------------GE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 139 (270)
Q Consensus 87 ~-------------------------~~--~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~ 139 (270)
. ++ ..++-+..+++.....+.+-++|| |.++.|.+....+..
T Consensus 103 ~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDE-----------P~taLDk~g~a~l~~ 171 (209)
T COG4133 103 HGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDE-----------PFTALDKEGVALLTA 171 (209)
T ss_pred hCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecC-----------cccccCHHHHHHHHH
Confidence 0 01 122223333344445667999999 888999999888888
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCCCCchhhhcC
Q 024249 140 LLNQLDGFEASNKIKVLMATNRIDILDQALLR 171 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r 171 (270)
++..- ...+=.||+|||.+-.++++-.+
T Consensus 172 l~~~H----~~~GGiVllttHq~l~~~~a~~~ 199 (209)
T COG4133 172 LMAAH----AAQGGIVLLTTHQPLPIASAQIR 199 (209)
T ss_pred HHHHH----hcCCCEEEEecCCccCCCccceE
Confidence 87654 34455699999998877766544
No 465
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.15 E-value=2.3e-10 Score=98.27 Aligned_cols=111 Identities=21% Similarity=0.247 Sum_probs=80.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCeEEEEcchhHH-----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSELV----------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~i~~~~~~----------------------------------- 83 (270)
+|.+.+|..+.|.||+|+|||||+++|++.. ..+.+.+++.++.
T Consensus 24 sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~ 103 (275)
T cd03289 24 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKW 103 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCC
Confidence 3568899999999999999999999999742 2344444332110
Q ss_pred ------------------Hhhhc-------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 84 ------------------QKYIG-------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 84 ------------------~~~~~-------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
...++ ..+++.+-.+.+|....|.|+++|| |+++.|..
T Consensus 104 ~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDE-----------pts~LD~~ 172 (275)
T cd03289 104 SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE-----------PSAHLDPI 172 (275)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC-----------ccccCCHH
Confidence 00000 1233456667778889999999999 88899999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
....+.+.+..+. .+.+||++||+.+.+.
T Consensus 173 ~~~~l~~~l~~~~-----~~~tii~isH~~~~i~ 201 (275)
T cd03289 173 TYQVIRKTLKQAF-----ADCTVILSEHRIEAML 201 (275)
T ss_pred HHHHHHHHHHHhc-----CCCEEEEEECCHHHHH
Confidence 9999999888752 2588999999987654
No 466
>PRK13409 putative ATPase RIL; Provisional
Probab=99.15 E-value=1.4e-10 Score=109.39 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=81.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcc------h-----------hHHHh----------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSG------S-----------ELVQK---------------- 85 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~------~-----------~~~~~---------------- 85 (270)
+.+.+|..+.|.||||+|||||+++|++.. ..+.+.++. . +....
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~ 439 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIK 439 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHH
Confidence 446788999999999999999999999842 233332110 0 00000
Q ss_pred ----------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCe
Q 024249 86 ----------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 153 (270)
Q Consensus 86 ----------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 153 (270)
.+. .++++.+..+++|....|.+++||| |+++.|...+..+.++|..+. .+.+.
T Consensus 440 ~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE-----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~ 505 (590)
T PRK13409 440 PLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE-----------PSAHLDVEQRLAVAKAIRRIA---EEREA 505 (590)
T ss_pred HCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH---HhCCC
Confidence 000 2334456667778889999999999 899999999999999998873 33468
Q ss_pred EEEEEeCCCCCchh
Q 024249 154 KVLMATNRIDILDQ 167 (270)
Q Consensus 154 ~vi~tt~~~~~l~~ 167 (270)
+||++||+.+.+..
T Consensus 506 tviivsHD~~~~~~ 519 (590)
T PRK13409 506 TALVVDHDIYMIDY 519 (590)
T ss_pred EEEEEeCCHHHHHH
Confidence 89999999887654
No 467
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.14 E-value=2e-10 Score=112.79 Aligned_cols=116 Identities=24% Similarity=0.434 Sum_probs=90.4
Q ss_pred HHHH--hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHHHh--------------------------
Q 024249 36 ELFE--SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQK-------------------------- 85 (270)
Q Consensus 36 ~~~~--~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~~~-------------------------- 85 (270)
..++ +|.+++|..+.|+||+||||||++..+.+ .+..+.+.+++.++...
T Consensus 367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eN 446 (1228)
T KOG0055|consen 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIREN 446 (1228)
T ss_pred hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHH
Confidence 3444 35578999999999999999999999998 45567777777654110
Q ss_pred -----------------------------------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCC
Q 024249 86 -----------------------------------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124 (270)
Q Consensus 86 -----------------------------------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~ 124 (270)
.++ .++++.+-++++|...+|.||+|||
T Consensus 447 I~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDE----------- 515 (1228)
T KOG0055|consen 447 IRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDE----------- 515 (1228)
T ss_pred HhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecC-----------
Confidence 001 3456778888889999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 125 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++.+|++..+.+.+.|+.. ..+.+.|+.+|+...+-.
T Consensus 516 aTSaLD~~se~~Vq~ALd~~-----~~grTTivVaHRLStIrn 553 (1228)
T KOG0055|consen 516 ATSALDAESERVVQEALDKA-----SKGRTTIVVAHRLSTIRN 553 (1228)
T ss_pred cccccCHHHHHHHHHHHHHh-----hcCCeEEEEeeehhhhhc
Confidence 78899999999999999876 235588889999887754
No 468
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.14 E-value=1.5e-10 Score=105.89 Aligned_cols=114 Identities=24% Similarity=0.367 Sum_probs=89.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC------CeEEEEcchhHH------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSGSELV------------------------------ 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~------~~~i~i~~~~~~------------------------------ 83 (270)
||.+.+|+.+.|.|.+||||||++++|-+... .+-+.+++.++.
T Consensus 29 sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~ 108 (539)
T COG1123 29 SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVM 108 (539)
T ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchh
Confidence 56789999999999999999999999987432 244544443320
Q ss_pred --------------------------------------H--hhhch--hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcc
Q 024249 84 --------------------------------------Q--KYIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 121 (270)
Q Consensus 84 --------------------------------------~--~~~~~--~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~ 121 (270)
. .|+.+ ++.+.+.++++|...+|.+|++||
T Consensus 109 tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE-------- 180 (539)
T COG1123 109 TIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE-------- 180 (539)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC--------
Confidence 0 12222 345667888889999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 122 MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|++.+|...+.++.++|..+. ...+..+|++||++..+..
T Consensus 181 ---PTTaLDvt~q~qIL~llk~l~---~e~g~a~l~ITHDl~Vva~ 220 (539)
T COG1123 181 ---PTTALDVTTQAQILDLLKDLQ---RELGMAVLFITHDLGVVAE 220 (539)
T ss_pred ---CccccCHHHHHHHHHHHHHHH---HHcCcEEEEEcCCHHHHHH
Confidence 999999999999999999884 5678999999999886654
No 469
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.14 E-value=1.3e-09 Score=102.76 Aligned_cols=195 Identities=23% Similarity=0.298 Sum_probs=120.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCC--eEEEEcchhHHHhhhchhhHHHHHHHHHH---------HhcCCeEEEEcCCC
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGSELVQKYIGEGSRMVRELFVMA---------REHAPSIIFMDEID 115 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~a---------~~~~p~il~lDeid 115 (270)
.+|+|.|++|||||+++++++...+. +++.+.........+|.. .+...+... ......+||+||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 57999999999999999999987543 577776432222222221 011101000 01223599999987
Q ss_pred cccCcccCCCCCCCChHHHHHHHHHHHhhc------CCc--CCCCeEEEEEeCCCC---CchhhhcCCCCcceEEEeC-C
Q 024249 116 SIGSARMESGSGNGDSEVQRTMLELLNQLD------GFE--ASNKIKVLMATNRID---ILDQALLRPGRIDRKIEFP-N 183 (270)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~------~~~--~~~~~~vi~tt~~~~---~l~~~l~r~~r~~~~i~~~-~ 183 (270)
.+ ++..+..+.+.+++-. +.. ......+|+|+|..+ .+.+.+.. ||...+.+. .
T Consensus 95 rl------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 95 LL------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred hC------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 74 3556777777775421 111 113567888777654 57778877 888777664 5
Q ss_pred CCHHHHHHHHHHhhccCC-------------------CCCCC-----CHHHHHHHc--CCCC-HHHHHHHHHHHHHHHHH
Q 024249 184 PNEESRLDILKIHSRRMN-------------------LMRGI-----DLKKIAEKM--NGAS-GAELKAVCTEAGMFALR 236 (270)
Q Consensus 184 p~~~~r~~il~~~~~~~~-------------------~~~~~-----~~~~la~~~--~g~~-~~dl~~l~~~a~~~a~~ 236 (270)
|..++|.+|++....... ....+ .+..++..+ .|.+ .+--..+++.|...|.-
T Consensus 161 ~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal 240 (589)
T TIGR02031 161 ASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAAL 240 (589)
T ss_pred CCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHH
Confidence 577888998876542110 01111 122232222 2554 44444677778888888
Q ss_pred hcCCCCCHHHHHHHHHHHhhh
Q 024249 237 ERRIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 237 ~~~~~i~~~d~~~a~~~~~~~ 257 (270)
+++..++.+|+..|+.-+++.
T Consensus 241 ~gr~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 241 HGRTEVTEEDLKLAVELVLLP 261 (589)
T ss_pred hCCCCCCHHHHHHHHHHHhhh
Confidence 899999999999999999864
No 470
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.14 E-value=1.3e-09 Score=98.49 Aligned_cols=214 Identities=16% Similarity=0.199 Sum_probs=118.0
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
+|||++.|.+.++++-..+-+.++++++........ --..+.+||+||+||||||.++.|+.+.+..++.....
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~------~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Np 144 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTP------KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNP 144 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhcc------CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCC
Confidence 589999999999999999999999999983222111 12356788999999999999999999998887765411
Q ss_pred -h------------HHHhhhchhhHHHHHHHHHHH------------hcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 81 -E------------LVQKYIGEGSRMVRELFVMAR------------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 81 -~------------~~~~~~~~~~~~~~~~~~~a~------------~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
. ....++...-...+....++. ..+|.+|++||+=..+. .| ...
T Consensus 145 i~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~---------~d--~~~ 213 (634)
T KOG1970|consen 145 INLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFY---------RD--DSE 213 (634)
T ss_pred ccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhh---------hh--hHH
Confidence 1 111111111122233333331 23577999999633221 11 233
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCc-hhh------hcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCC--
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDIL-DQA------LLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRG-- 205 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l-~~~------l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~-- 205 (270)
.+.++|..+-... .-.+++++|-+..... ++. +.-..|+ ..|.|.+-...--++.|+.+++.... ...
T Consensus 214 ~f~evL~~y~s~g-~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k 291 (634)
T KOG1970|consen 214 TFREVLRLYVSIG-RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIK 291 (634)
T ss_pred HHHHHHHHHHhcC-CCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCc
Confidence 3444444432211 1234344443322122 221 1111233 24667666666666667666554322 121
Q ss_pred -CCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 024249 206 -IDLKKIAEKMNGASGAELKAVCTEAGMFA 234 (270)
Q Consensus 206 -~~~~~la~~~~g~~~~dl~~l~~~a~~~a 234 (270)
-+...+-..+.| +++||...+....+.+
T Consensus 292 ~~~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 292 VPDTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred CchhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 123333333333 5668877666655554
No 471
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1e-09 Score=96.41 Aligned_cols=129 Identities=22% Similarity=0.352 Sum_probs=84.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCe------------------------EEEEcchhHHHhhhchhhHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCT------------------------FIRVSGSELVQKYIGEGSRMVRELFVM 100 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~------------------------~i~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (270)
.+..+|++||+|+|||++++.+|+.+.|. ++.+....- +. .-....++++...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 46679999999999999999999865431 222211100 00 0122345555544
Q ss_pred HH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcc
Q 024249 101 AR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRID 176 (270)
Q Consensus 101 a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~ 176 (270)
+. .....|++||++|.+ +....+.+...+++ ...+.++|++|++++.+.+.+++ |.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m------------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc- 157 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAM------------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RC- 157 (328)
T ss_pred HhhccccCCCeEEEECChhhC------------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hc-
Confidence 43 345679999998874 23344444444433 33578899999999999999887 54
Q ss_pred eEEEeCCCCHHHHHHHHHHh
Q 024249 177 RKIEFPNPNEESRLDILKIH 196 (270)
Q Consensus 177 ~~i~~~~p~~~~r~~il~~~ 196 (270)
..+.|++|+.++-.+.+...
T Consensus 158 ~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 158 QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred eeeeCCCcCHHHHHHHHHHh
Confidence 34899999998887777653
No 472
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.1e-10 Score=100.58 Aligned_cols=114 Identities=25% Similarity=0.384 Sum_probs=83.0
Q ss_pred HHHhc--CCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH----------------------------
Q 024249 37 LFESL--GIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ---------------------------- 84 (270)
Q Consensus 37 ~~~~~--~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~---------------------------- 84 (270)
.++++ .+.+|+.+.|.|++||||||++..+++. ++.+.+.+++.++..
T Consensus 353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL 432 (573)
T COG4987 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNL 432 (573)
T ss_pred hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHH
Confidence 44444 4789999999999999999999999973 445666665533210
Q ss_pred ---------------------------------hhhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 85 ---------------------------------KYIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 85 ---------------------------------~~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
.+.+ .++++.+-.++++.-++-+++++|| |
T Consensus 433 ~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDE-----------P 501 (573)
T COG4987 433 RLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDE-----------P 501 (573)
T ss_pred hhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecC-----------C
Confidence 0111 2334456666667667777999999 8
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 126 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+.+.|+.+.+.+.+++.+. -.+.++|+.||+...+.
T Consensus 502 TegLD~~TE~~vL~ll~~~-----~~~kTll~vTHrL~~le 537 (573)
T COG4987 502 TEGLDPITERQVLALLFEH-----AEGKTLLMVTHRLRGLE 537 (573)
T ss_pred cccCChhhHHHHHHHHHHH-----hcCCeEEEEecccccHh
Confidence 9999999998888877654 23788999999987765
No 473
>PRK13409 putative ATPase RIL; Provisional
Probab=99.13 E-value=2.8e-10 Score=107.46 Aligned_cols=109 Identities=23% Similarity=0.312 Sum_probs=78.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEE-----------EcchhHHHh----------------h-------
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIR-----------VSGSELVQK----------------Y------- 86 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~-----------i~~~~~~~~----------------~------- 86 (270)
+.+|..+.|.||||+|||||+++|++. ++.+.+. +++.++... +
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~ 175 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKV 175 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhh
Confidence 567888999999999999999999984 3344443 333222110 0
Q ss_pred ----------------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 87 ----------------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 87 ----------------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
+. .++++.+-.+..|....|.+++||| |+++.|
T Consensus 176 ~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDE-----------Pts~LD 244 (590)
T PRK13409 176 FKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE-----------PTSYLD 244 (590)
T ss_pred hcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCCCCC
Confidence 00 1122334445556778899999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
......+.+++..+. . +.+||++||+.+.++.
T Consensus 245 ~~~~~~l~~~i~~l~----~-g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 245 IRQRLNVARLIRELA----E-GKYVLVVEHDLAVLDY 276 (590)
T ss_pred HHHHHHHHHHHHHHH----C-CCEEEEEeCCHHHHHH
Confidence 999999999998873 3 6889999999887764
No 474
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.5e-10 Score=107.71 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+-.+.+|....|.+|++|| |+++.|...+..+.+++..+. +.+.+||++||+.+.+...
T Consensus 404 rl~la~al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~l~----~~g~tviivsHd~~~~~~~ 462 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDE-----------PTRGIDVGAKHEIYNVIYELA----AQGVAVLFVSSDLPEVLGV 462 (501)
T ss_pred HHHHHHHHccCCCEEEEcC-----------CCCCCCHhHHHHHHHHHHHHH----hCCCEEEEECCCHHHHHhh
Confidence 3344446667899999999 999999999999999998873 3467899999998877653
No 475
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.12 E-value=2.4e-10 Score=107.54 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=79.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH---------------------H------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------Q------------ 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------~------------ 84 (270)
++.+++|+.+.|.||+|+|||||++.+++. +..+.+.+++.++. .
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~ 422 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANP 422 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHH
Confidence 355789999999999999999999999983 33444444332210 0
Q ss_pred -------------hhh--------c---hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHH
Q 024249 85 -------------KYI--------G---EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 140 (270)
Q Consensus 85 -------------~~~--------~---~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~ 140 (270)
... | .++++.+-.+++|...+|.++++|| |+++.|+.....+.+.
T Consensus 423 ~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE-----------~ts~LD~~~~~~i~~~ 491 (547)
T PRK10522 423 ALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE-----------WAADQDPHFRREFYQV 491 (547)
T ss_pred HHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCCCCCHHHHHHHHHH
Confidence 000 0 1244566677888889999999999 8889999888877776
Q ss_pred HHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 141 LNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 141 l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+.... ...+.++|++||+++.+
T Consensus 492 l~~~~---~~~~~tvi~itH~~~~~ 513 (547)
T PRK10522 492 LLPLL---QEMGKTIFAISHDDHYF 513 (547)
T ss_pred HHHHH---HhCCCEEEEEEechHHH
Confidence 65431 12367899999997543
No 476
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.12 E-value=1.9e-10 Score=92.65 Aligned_cols=111 Identities=28% Similarity=0.433 Sum_probs=81.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHHhhh------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKYI------------------------------ 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~~~~------------------------------ 87 (270)
++.++.+.++-+.|.||+|||||++++|+. +..+.+.+++.++.....
T Consensus 26 sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~l 105 (263)
T COG1101 26 SLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLAL 105 (263)
T ss_pred ceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHH
Confidence 456788999999999999999999999995 456778877665411000
Q ss_pred -----------------------------------------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCC
Q 024249 88 -----------------------------------------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 124 (270)
Q Consensus 88 -----------------------------------------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~ 124 (270)
+ .+.++..-.+.+|..+.|.|+++||
T Consensus 106 a~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE----------- 174 (263)
T COG1101 106 AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE----------- 174 (263)
T ss_pred HHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc-----------
Confidence 0 1222223333446678999999999
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 125 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 125 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
.++..||.....+.++=.++ ..+.+++.++.||+++.
T Consensus 175 HTAALDPkta~~vm~lT~ki---V~~~klTtlMVTHnm~~ 211 (263)
T COG1101 175 HTAALDPKTAEFVMELTAKI---VEEHKLTTLMVTHNMED 211 (263)
T ss_pred hhhcCCcchHHHHHHHHHHH---HHhcCCceEEEeccHHH
Confidence 78899999988877776665 35668999999998654
No 477
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3e-10 Score=92.46 Aligned_cols=112 Identities=22% Similarity=0.332 Sum_probs=76.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC----eEEEEcchhHHHhh-----------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC----TFIRVSGSELVQKY----------------------------- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~----~~i~i~~~~~~~~~----------------------------- 86 (270)
++.+..+....|.||||+|||||+++|++.++. +-+.+++.++....
T Consensus 24 nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr 103 (251)
T COG0396 24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLR 103 (251)
T ss_pred ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHH
Confidence 345788999999999999999999999986543 33445544431100
Q ss_pred -------------------------------------hc---hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCC
Q 024249 87 -------------------------------------IG---EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126 (270)
Q Consensus 87 -------------------------------------~~---~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~ 126 (270)
++ ++.++.+.-+.+.....|.+.+||| ++
T Consensus 104 ~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE-----------~D 172 (251)
T COG0396 104 AAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDE-----------PD 172 (251)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecC-----------CC
Confidence 00 0011111222234557899999999 56
Q ss_pred CCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 127 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 127 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
++.|-...+.+.+.++.+. +.+..++++||...-++
T Consensus 173 SGLDIdalk~V~~~i~~lr----~~~~~~liITHy~rll~ 208 (251)
T COG0396 173 SGLDIDALKIVAEGINALR----EEGRGVLIITHYQRLLD 208 (251)
T ss_pred cCccHHHHHHHHHHHHHHh----cCCCeEEEEecHHHHHh
Confidence 6888888888999999883 45778999999865544
No 478
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=2.9e-10 Score=97.27 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 96 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 96 ~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
-.+.+|....|.++++|| |+++.|......+.+++..+. . +.+||++||+.+.+..
T Consensus 170 v~laral~~~p~llllDE-----------Pt~gLD~~~~~~l~~~l~~l~----~-~~tiiivth~~~~~~~ 225 (265)
T PRK14252 170 LCIARALATDPEILLFDE-----------PTSALDPIATASIEELISDLK----N-KVTILIVTHNMQQAAR 225 (265)
T ss_pred HHHHHHHHcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH----h-CCEEEEEecCHHHHHH
Confidence 334456667899999999 889999999999999998873 2 4789999999887654
No 479
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.12 E-value=3.7e-10 Score=104.89 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|...+|.++++|| |+++.|......+.++|..+. ...+.+||++||+.+.+..
T Consensus 409 rv~la~al~~~p~lllLDE-----------Pt~gLD~~~~~~l~~~L~~l~---~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 409 LALIVRALVKHPTLLILDE-----------PLQGLDPLNRQLVRRFVDVLI---SEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHHHhcCCCEEEEcC-----------ccccCCHHHHHHHHHHHHHHH---hcCCcEEEEEecchhhhhh
Confidence 3444456678899999999 899999999999999998883 2334679999999988764
No 480
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.12 E-value=2.1e-10 Score=109.31 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+++|...+|.+|++|| |+++.|...+..+.+++..+. ...+.+||++||+.+.+..
T Consensus 176 Rv~iA~AL~~~P~lLllDE-----------Pt~~LD~~~~~~l~~ll~~l~---~~~g~tvi~itHdl~~~~~ 234 (623)
T PRK10261 176 RVMIAMALSCRPAVLIADE-----------PTTALDVTIQAQILQLIKVLQ---KEMSMGVIFITHDMGVVAE 234 (623)
T ss_pred HHHHHHHHhCCCCEEEEeC-----------CCCccCHHHHHHHHHHHHHHH---HhcCCEEEEEcCCHHHHHH
Confidence 4455557778999999999 899999999999999999883 2347889999999876654
No 481
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=2.5e-10 Score=107.02 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 93 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 93 ~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+.+..+.++....|.++++|| |+++.|+.....+.+++.. .+.+||++||+.+.+...
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDE-----------Pt~~LD~~~~~~l~~~l~~-------~~~tiiivsHd~~~~~~~ 218 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDE-----------PTNNLDINTIRWLEDVLNE-------RNSTMIIISHDRHFLNSV 218 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcC-----------CCcccCHHHHHHHHHHHHh-------CCCeEEEEeCCHHHHHhh
Confidence 345566667778999999999 8999999999988888853 257899999998877653
No 482
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.12 E-value=6.6e-10 Score=104.22 Aligned_cols=210 Identities=22% Similarity=0.304 Sum_probs=124.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEEcchhHH
Q 024249 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELV 83 (270)
Q Consensus 7 ~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i~~~~~~ 83 (270)
+..++++++|.....+++.+.+.... .....|+|+|++||||+++|++|... .+.+++.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34678899999999999988887742 24567999999999999999999975 45799999998763
Q ss_pred Hhhh-----chhhH-------HHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc--CCcC
Q 024249 84 QKYI-----GEGSR-------MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD--GFEA 149 (270)
Q Consensus 84 ~~~~-----~~~~~-------~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~~~ 149 (270)
.... |.... .....|. ..+...|||||+|.+. ...+..+..+++.-. ....
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~------------~~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEIS------------PAFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCC------------HHHHHHHHHHHhcCcEEECCC
Confidence 3211 10000 0000111 1234689999998753 456667777775421 0000
Q ss_pred ----CCCeEEEEEeCCCCCchhhhcCCCCc---------ceEEEeCCCC--HHHHHHHHHHhhccCC----CCCCCCHHH
Q 024249 150 ----SNKIKVLMATNRIDILDQALLRPGRI---------DRKIEFPNPN--EESRLDILKIHSRRMN----LMRGIDLKK 210 (270)
Q Consensus 150 ----~~~~~vi~tt~~~~~l~~~l~r~~r~---------~~~i~~~~p~--~~~r~~il~~~~~~~~----~~~~~~~~~ 210 (270)
...+.+|++|+.. +...+ ..|+| ...|.+|+.. .++...++..++.... ....++-+.
T Consensus 325 ~~~~~~~~riI~~s~~~--l~~~~-~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRD--LEEAV-AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CceEeecEEEEEeCCCC--HHHHH-HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1146788887642 22222 23344 2345565443 2444455555544321 112344333
Q ss_pred HHHHcC---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 024249 211 IAEKMN---GASGAELKAVCTEAGMFALRERRIHVTQEDFE 248 (270)
Q Consensus 211 la~~~~---g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~ 248 (270)
+..... .-+-++|++++++|...+ ....|+.+|+.
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 333221 236788888888887654 44578888875
No 483
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=1.5e-10 Score=107.88 Aligned_cols=113 Identities=17% Similarity=0.258 Sum_probs=80.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhH-------------------------H------H-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL-------------------------V------Q- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~-------------------------~------~- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++ . .
T Consensus 282 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~ 361 (506)
T PRK13549 282 SFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKN 361 (506)
T ss_pred eeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHH
Confidence 4668899999999999999999999999842 344444432110 0 0
Q ss_pred -------hhh-----c-----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 85 -------KYI-----G-----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 85 -------~~~-----~-----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
... . ..+++.+..+.+|...+|.++++||
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDE---------- 431 (506)
T PRK13549 362 ITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDE---------- 431 (506)
T ss_pred hhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcC----------
Confidence 000 0 0111223344446667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|...+..+.+++..+. +.+.+||++||+++.+..
T Consensus 432 -Pt~~LD~~~~~~l~~~l~~l~----~~g~tvi~~sHd~~~~~~ 470 (506)
T PRK13549 432 -PTRGIDVGAKYEIYKLINQLV----QQGVAIIVISSELPEVLG 470 (506)
T ss_pred -CCCCcCHhHHHHHHHHHHHHH----HCCCEEEEECCCHHHHHH
Confidence 899999999999999998873 247889999999887754
No 484
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.12 E-value=1.9e-10 Score=107.81 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|....|.++++|| |+++.|...+..+.+++..+. ...+.+||++||+++.+..
T Consensus 433 rv~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tvi~vsHd~~~~~~ 491 (529)
T PRK15134 433 RIAIARALILKPSLIILDE-----------PTSSLDKTVQAQILALLKSLQ---QKHQLAYLFISHDLHVVRA 491 (529)
T ss_pred HHHHHHHHhCCCCEEEeeC-----------CccccCHHHHHHHHHHHHHHH---HhhCCEEEEEeCCHHHHHH
Confidence 3444556678899999999 899999999999999998873 2336789999999887654
No 485
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1.7e-10 Score=108.08 Aligned_cols=111 Identities=20% Similarity=0.314 Sum_probs=78.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcc---------h---------hHHH---hh----------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSG---------S---------ELVQ---KY---------- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~---------~---------~~~~---~~---------- 86 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++ . .+.. .+
T Consensus 339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 418 (530)
T PRK15064 339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAV 418 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHH
Confidence 4567889999999999999999999999742 223222211 0 0000 00
Q ss_pred -----------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCC
Q 024249 87 -----------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF 147 (270)
Q Consensus 87 -----------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 147 (270)
++ ..+++.+..+.++....|.++++|| |+++.|......+.+++..+
T Consensus 419 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~--- 484 (530)
T PRK15064 419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE-----------PTNHMDMESIESLNMALEKY--- 484 (530)
T ss_pred HHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC-----------CCCCCCHHHHHHHHHHHHHC---
Confidence 00 1223345556667778999999999 89999999999999988775
Q ss_pred cCCCCeEEEEEeCCCCCchhh
Q 024249 148 EASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 148 ~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+.+||++||+.+.+...
T Consensus 485 ----~~tvi~vsHd~~~~~~~ 501 (530)
T PRK15064 485 ----EGTLIFVSHDREFVSSL 501 (530)
T ss_pred ----CCEEEEEeCCHHHHHHh
Confidence 23799999998876543
No 486
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.3e-10 Score=97.04 Aligned_cols=114 Identities=27% Similarity=0.402 Sum_probs=86.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhH-----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSEL----------------------------------- 82 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~----------------------------------- 82 (270)
++..+.+....|+|++|+||||++++||+ +++.+.+.+++..+
T Consensus 18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL 97 (352)
T COG4148 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNL 97 (352)
T ss_pred eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecch
Confidence 34455557788999999999999999998 34555555544322
Q ss_pred ------------------------HHhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 83 ------------------------VQKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 83 ------------------------~~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
...++. .+.++.+.++.+|.-.+|.++++|| |-++.|...++.
T Consensus 98 ~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE-----------PLaSLD~~RK~E 166 (352)
T COG4148 98 RYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE-----------PLASLDLPRKRE 166 (352)
T ss_pred hhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC-----------chhhcccchhhH
Confidence 111121 3456678888999999999999999 888899888888
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+++.+. ..-++.|+-.||+++++..
T Consensus 167 ilpylERL~---~e~~IPIlYVSHS~~Ev~R 194 (352)
T COG4148 167 ILPYLERLR---DEINIPILYVSHSLDEVLR 194 (352)
T ss_pred HHHHHHHHH---HhcCCCEEEEecCHHHHHh
Confidence 888888884 4457889999999887754
No 487
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=2.9e-10 Score=108.61 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
+..+.++....|.||+||| |+++.|......+.+++..+ +.+||++||+.+.++..
T Consensus 157 Rv~LA~aL~~~P~lLLLDE-----------Ptn~LD~~~~~~L~~~L~~~-------~~tviivsHd~~~l~~~ 212 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDE-----------PTNHLDLDAVIWLEKWLKSY-------QGTLILISHDRDFLDPI 212 (638)
T ss_pred HHHHHHHHccCCCEEEEcC-----------CCCcCCHHHHHHHHHHHHhC-------CCeEEEEeCCHHHHHHh
Confidence 4445556778899999999 89999999999888888765 24799999999888754
No 488
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.11 E-value=3.9e-10 Score=102.39 Aligned_cols=136 Identities=18% Similarity=0.301 Sum_probs=93.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHH---------------------------------H
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELV---------------------------------Q 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~---------------------------------~ 84 (270)
+|.+.+++...|.|.||+|||||+|.|++ .++.+.+.+++.... .
T Consensus 28 ~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLg 107 (500)
T COG1129 28 SLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLG 107 (500)
T ss_pred eeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcc
Confidence 45678999999999999999999999997 344555555543210 0
Q ss_pred h---------------------------------hhch--hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 85 K---------------------------------YIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 85 ~---------------------------------~~~~--~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
. .++. ..++..-.+++|...++.||++|| |++.+
T Consensus 108 re~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDE-----------PTaaL 176 (500)
T COG1129 108 REPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDE-----------PTAAL 176 (500)
T ss_pred cccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccC
Confidence 0 0001 122233344556667888999999 89999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh-----hcCCCCcceEEE-eCCCCHHHHH
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA-----LLRPGRIDRKIE-FPNPNEESRL 190 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~-----l~r~~r~~~~i~-~~~p~~~~r~ 190 (270)
.......+.+++..+ ...++.+|.+||+++++-.. ++|.|+.-.... ...-+.++-.
T Consensus 177 t~~E~~~Lf~~ir~L----k~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv 239 (500)
T COG1129 177 TVKETERLFDLIRRL----KAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELV 239 (500)
T ss_pred CHHHHHHHHHHHHHH----HhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHH
Confidence 999999999999998 46799999999998876542 456666533333 3444444433
No 489
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.10 E-value=2.7e-10 Score=90.87 Aligned_cols=115 Identities=29% Similarity=0.382 Sum_probs=66.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCC----eEEEEcchhHHHhhhchhhHHHHHHHHH----HHhcCCeEEEEcCCCc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDC----TFIRVSGSELVQKYIGEGSRMVRELFVM----AREHAPSIIFMDEIDS 116 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~----a~~~~p~il~lDeid~ 116 (270)
|-..++|.||+|+|||.+++++|..+.. +++.++++.+... +.....+...+.. .......||+|||+|+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3456899999999999999999998885 9999999887651 1111111111111 1111123999999999
Q ss_pred ccCcccCCCCCCCCh---HHHHHHHHHHHhhc---CC---cCCCCeEEEEEeCCCCCc
Q 024249 117 IGSARMESGSGNGDS---EVQRTMLELLNQLD---GF---EASNKIKVLMATNRIDIL 165 (270)
Q Consensus 117 l~~~~~~~~~~~~~~---~~~~~l~~~l~~l~---~~---~~~~~~~vi~tt~~~~~l 165 (270)
..+.. ..+.+- ..++.++.+++.-. +. ..-.++.+|+|+|--...
T Consensus 80 a~~~~----~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 80 AHPSN----SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp CSHTT----TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHH
T ss_pred ccccc----cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccch
Confidence 86641 122222 23444555554311 00 011357788888864433
No 490
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.10 E-value=2.6e-10 Score=118.87 Aligned_cols=112 Identities=18% Similarity=0.268 Sum_probs=82.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH--------------------------------h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------K 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------~ 85 (270)
++.+.+|..+.|.||+|+|||||+++|++. +..+.+.+++.++.. .
T Consensus 950 sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~ 1029 (2272)
T TIGR01257 950 NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQ 1029 (2272)
T ss_pred EEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 456788999999999999999999999984 345555554432100 0
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ .++++.+-.+.+|....|.||++|| |+++.|+..++
T Consensus 1030 lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE-----------PTSGLDp~sr~ 1098 (2272)
T TIGR01257 1030 LKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE-----------PTSGVDPYSRR 1098 (2272)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CCcCCCHHHHH
Confidence 000 1122334455567778999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.++|..+. .+.+||++||+++.++.
T Consensus 1099 ~l~~lL~~l~-----~g~TIIltTHdmdea~~ 1125 (2272)
T TIGR01257 1099 SIWDLLLKYR-----SGRTIIMSTHHMDEADL 1125 (2272)
T ss_pred HHHHHHHHHh-----CCCEEEEEECCHHHHHH
Confidence 9999999872 26789999999887654
No 491
>PRK12377 putative replication protein; Provisional
Probab=99.10 E-value=2.1e-09 Score=90.55 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=63.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHHhhhchhh--HHHHHHHHHHHhcCCeEEEEcCCCcccCc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGS--RMVRELFVMAREHAPSIIFMDEIDSIGSA 120 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~~~~~~~~--~~~~~~~~~a~~~~p~il~lDeid~l~~~ 120 (270)
..+++|+||||||||+|+.+|+..+ +..++++...++......... ......+.. ....++|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~--- 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQ--- 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCC---
Confidence 4679999999999999999999854 556777777766553321110 011122222 246689999998653
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 121 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
.........+..+++.- ..+...+|+|||.
T Consensus 176 -------~~s~~~~~~l~~ii~~R----~~~~~ptiitSNl 205 (248)
T PRK12377 176 -------RETKNEQVVLNQIIDRR----TASMRSVGMLTNL 205 (248)
T ss_pred -------CCCHHHHHHHHHHHHHH----HhcCCCEEEEcCC
Confidence 12233456677777654 1234557888885
No 492
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.10 E-value=2.2e-10 Score=106.62 Aligned_cols=113 Identities=15% Similarity=0.245 Sum_probs=79.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV--------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~--------------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 280 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~ 359 (500)
T TIGR02633 280 SFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKN 359 (500)
T ss_pred eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHH
Confidence 4557889999999999999999999999853 2444544321100
Q ss_pred ---H---hhh-----c-----------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccC
Q 024249 84 ---Q---KYI-----G-----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 123 (270)
Q Consensus 84 ---~---~~~-----~-----------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~ 123 (270)
. ... . ..+++.+-.+.+|...+|.++++||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE---------- 429 (500)
T TIGR02633 360 ITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE---------- 429 (500)
T ss_pred hcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcC----------
Confidence 0 000 0 0111223344446667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 124 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 124 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|...+..+.+++..+. ..+.+||++||+++.+..
T Consensus 430 -Pt~~LD~~~~~~l~~~l~~l~----~~g~tviivsHd~~~~~~ 468 (500)
T TIGR02633 430 -PTRGVDVGAKYEIYKLINQLA----QEGVAIIVVSSELAEVLG 468 (500)
T ss_pred -CCCCcCHhHHHHHHHHHHHHH----hCCCEEEEECCCHHHHHH
Confidence 899999999999999998873 236789999999887764
No 493
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.10 E-value=1.8e-10 Score=107.48 Aligned_cols=58 Identities=17% Similarity=0.423 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|...+|.+|++|| |+++.|...+..+.+++..+. ..+.+||++||+++.+..
T Consensus 411 rl~la~al~~~p~lLlLDE-----------Pt~gLD~~~~~~l~~~l~~l~----~~g~tiIivsHd~~~i~~ 468 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDE-----------PTRGVDVSARNDIYQLIRSIA----AQNVAVLFISSDLEEIEQ 468 (510)
T ss_pred HHHHHHHHhhCCCEEEECC-----------CCcCcChhHHHHHHHHHHHHH----hCCCEEEEECCCHHHHHH
Confidence 4444556677899999999 899999999999999998873 236789999999887765
No 494
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.10 E-value=7.6e-10 Score=90.71 Aligned_cols=109 Identities=13% Similarity=0.234 Sum_probs=66.3
Q ss_pred HhcCCCCC-ceEEEEcCCCchHHHHHHHHHH-----hcCC----------eE-----EEEcchhHHHhhhchhhHHHHHH
Q 024249 39 ESLGIAQP-KGVLLYGPPGTGKTLLARAVAH-----HTDC----------TF-----IRVSGSELVQKYIGEGSRMVREL 97 (270)
Q Consensus 39 ~~~~~~~~-~~ilL~Gp~GtGKTtl~~~ia~-----~~~~----------~~-----i~i~~~~~~~~~~~~~~~~~~~~ 97 (270)
.++.+.++ +.++|+||||+|||||++.++. ..++ ++ ..+...+.........+..+++.
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~ 99 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNI 99 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHH
Confidence 34556777 4699999999999999999982 1111 10 01111122222222222223333
Q ss_pred HHHH-HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHH-HHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 98 FVMA-REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 98 ~~~a-~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
...+ ....|+++++|| |..+.|+.....+. .++..+. +.+.++|++||+.
T Consensus 100 ~~i~~~~~~p~llllDE-----------p~~glD~~~~~~i~~~~l~~l~----~~~~~vi~~tH~~ 151 (200)
T cd03280 100 ARILQHADPDSLVLLDE-----------LGSGTDPVEGAALAIAILEELL----ERGALVIATTHYG 151 (200)
T ss_pred HHHHHhCCCCcEEEEcC-----------CCCCCCHHHHHHHHHHHHHHHH----hcCCEEEEECCHH
Confidence 3222 236899999999 77888888777664 4666663 2367899999974
No 495
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.09 E-value=4.3e-10 Score=106.28 Aligned_cols=112 Identities=23% Similarity=0.393 Sum_probs=84.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC--CeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~~~i~i~~~~~~~--------------------------------- 84 (270)
++.+++|..+.|+||+||||||+++.+.+..+ .+-+.+++.++..
T Consensus 349 s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~ 428 (567)
T COG1132 349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP 428 (567)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC
Confidence 45678999999999999999999999998543 4666665543310
Q ss_pred ----------------------------hhhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ----------------------------KYIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ----------------------------~~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+| .++++.+-.+++|.-.+|.|+++|| ++++.|
T Consensus 429 ~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDE-----------aTSalD 497 (567)
T COG1132 429 DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE-----------ATSALD 497 (567)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEec-----------cccccC
Confidence 0011 2356677778888889999999999 788999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
......+.+.+..+. ++.++|+.+|+++.+..
T Consensus 498 ~~tE~~I~~~l~~l~-----~~rT~iiIaHRlsti~~ 529 (567)
T COG1132 498 TETEALIQDALKKLL-----KGRTTLIIAHRLSTIKN 529 (567)
T ss_pred HHhHHHHHHHHHHHh-----cCCEEEEEeccHhHHHh
Confidence 999988888887652 22477779999876654
No 496
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.09 E-value=5.7e-10 Score=99.82 Aligned_cols=139 Identities=21% Similarity=0.338 Sum_probs=96.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH--hcCCeEEEEcchhHHHh-----------------------------h--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQK-----------------------------Y-- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~--~~~~~~i~i~~~~~~~~-----------------------------~-- 86 (270)
+|.+.++..-.|.|.||+|||||++.+.+ +++.+-+++++..+.-. .
T Consensus 24 ~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg 103 (501)
T COG3845 24 SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILG 103 (501)
T ss_pred eeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhc
Confidence 56788999999999999999999999997 45666676665432000 0
Q ss_pred ----------------------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 87 ----------------------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 87 ----------------------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
++ ....+.+--+-++....+.+|+||| |++-+.
T Consensus 104 ~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDE-----------PTaVLT 172 (501)
T COG3845 104 LEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDE-----------PTAVLT 172 (501)
T ss_pred CccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcC-----------CcccCC
Confidence 00 0112223233346677899999999 888888
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh-----hhcCCCCcceEEE-eCCCCHHHHHHHH
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ-----ALLRPGRIDRKIE-FPNPNEESRLDIL 193 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~-----~l~r~~r~~~~i~-~~~p~~~~r~~il 193 (270)
++....+.+.+..+ ...+.+||++||..+++-. .++|.|+.-..+. .+.-+.++-.++.
T Consensus 173 P~E~~~lf~~l~~l----~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lM 237 (501)
T COG3845 173 PQEADELFEILRRL----AAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELM 237 (501)
T ss_pred HHHHHHHHHHHHHH----HHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHh
Confidence 98888889988888 4578999999999887654 3567777644444 3333455554443
No 497
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.09 E-value=5.1e-10 Score=106.98 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh
Q 024249 94 VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 94 ~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~ 168 (270)
.+..+.++....|.||++|| |+++.|......+.++|..+. .+||++||+.+.++..
T Consensus 163 qRv~LAraL~~~P~lLLLDE-----------Pt~~LD~~~~~~L~~~L~~~~-------~tvlivsHd~~~l~~~ 219 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDE-----------PTNHLDIETIEWLEGFLKTFQ-------GSIIFISHDRSFIRNM 219 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcC-----------CCCccCHHHHHHHHHHHHhCC-------CEEEEEeCCHHHHHHh
Confidence 45555667778999999999 899999999999999998762 3799999999887754
No 498
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2.3e-10 Score=109.34 Aligned_cols=111 Identities=17% Similarity=0.296 Sum_probs=78.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEc---------ch---------hHHHh---h----------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVS---------GS---------ELVQK---Y---------- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~---------~~---------~~~~~---~---------- 86 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+. -. .+... .
T Consensus 332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 411 (638)
T PRK10636 332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLR 411 (638)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHH
Confidence 3457889999999999999999999999842 22322221 00 00000 0
Q ss_pred ----------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc
Q 024249 87 ----------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 148 (270)
Q Consensus 87 ----------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 148 (270)
++ .++++.+-.+.++....|.+|+||| |+++.|......+.++|..+
T Consensus 412 ~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE-----------Pt~~LD~~~~~~l~~~L~~~---- 476 (638)
T PRK10636 412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE-----------PTNHLDLDMRQALTEALIDF---- 476 (638)
T ss_pred HHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CCCCCCHHHHHHHHHHHHHc----
Confidence 00 1223345556667778999999999 89999999999999999876
Q ss_pred CCCCeEEEEEeCCCCCchhh
Q 024249 149 ASNKIKVLMATNRIDILDQA 168 (270)
Q Consensus 149 ~~~~~~vi~tt~~~~~l~~~ 168 (270)
.+ +||++||+.+.+...
T Consensus 477 --~g-tvi~vSHd~~~~~~~ 493 (638)
T PRK10636 477 --EG-ALVVVSHDRHLLRST 493 (638)
T ss_pred --CC-eEEEEeCCHHHHHHh
Confidence 13 799999998877654
No 499
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=4.9e-10 Score=95.44 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+.+|....|.++++|| |+.+.|......+.+++..+. + +.+||++||+.+.+..
T Consensus 161 rl~laral~~~P~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tiilvsh~~~~~~~ 217 (257)
T PRK14246 161 RLTIARALALKPKVLLMDE-----------PTSMIDIVNSQAIEKLITELK----N-EIAIVIVSHNPQQVAR 217 (257)
T ss_pred HHHHHHHHHcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHh----c-CcEEEEEECCHHHHHH
Confidence 3344456667899999999 889999999999999998873 2 4789999999887654
No 500
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.08 E-value=2.7e-10 Score=106.11 Aligned_cols=58 Identities=12% Similarity=0.315 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+++|....|.++++|| |+++.|......+.+++..+. ..+.+||++||+++.+..
T Consensus 403 rv~lA~al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tviivtHd~~~~~~ 460 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDE-----------PTRGVDVGAKKEIYQLINQFK----AEGLSIILVSSEMPEVLG 460 (501)
T ss_pred HHHHHHHHhhCCCEEEEcC-----------CCCCCCHhHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHh
Confidence 3444456667899999999 899999999999999999873 236789999999887654
Done!