Query 024249
Match_columns 270
No_of_seqs 253 out of 2495
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 04:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 5E-61 1.7E-65 425.4 30.2 268 2-270 138-405 (405)
2 4b4t_I 26S protease regulatory 100.0 5.3E-58 1.8E-62 407.1 28.5 263 1-264 171-433 (437)
3 4b4t_H 26S protease regulatory 100.0 9.4E-57 3.2E-61 402.6 29.3 257 1-258 198-454 (467)
4 4b4t_L 26S protease subunit RP 100.0 5.6E-56 1.9E-60 398.7 29.3 256 1-257 170-425 (437)
5 4b4t_M 26S protease regulatory 100.0 1.6E-56 5.6E-61 401.9 25.4 262 1-264 170-431 (434)
6 4b4t_K 26S protease regulatory 100.0 1.3E-55 4.5E-60 395.7 27.7 257 1-258 161-418 (428)
7 3cf2_A TER ATPase, transitiona 100.0 3.4E-50 1.2E-54 383.8 11.7 265 5-270 470-759 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.8E-47 9.7E-52 363.7 20.2 249 5-257 197-462 (806)
9 2x8a_A Nuclear valosin-contain 100.0 1.7E-44 5.9E-49 308.7 21.6 254 5-262 3-272 (274)
10 3cf0_A Transitional endoplasmi 100.0 8.3E-44 2.8E-48 308.7 24.7 265 3-270 6-297 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.3E-42 2.2E-46 299.4 22.8 260 3-269 3-314 (322)
12 3h4m_A Proteasome-activating n 100.0 4.4E-41 1.5E-45 289.0 27.2 256 2-258 7-262 (285)
13 2ce7_A Cell division protein F 100.0 1.8E-40 6E-45 302.2 27.7 250 6-257 10-259 (476)
14 1lv7_A FTSH; alpha/beta domain 100.0 3.8E-40 1.3E-44 279.3 26.9 254 1-256 1-254 (257)
15 3eie_A Vacuolar protein sortin 100.0 3.2E-41 1.1E-45 295.1 20.9 261 2-269 8-313 (322)
16 2qp9_X Vacuolar protein sortin 100.0 3.1E-40 1E-44 292.4 22.7 260 3-269 42-346 (355)
17 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.8E-39 1.3E-43 273.3 19.7 256 7-263 1-258 (262)
18 3hu3_A Transitional endoplasmi 100.0 2.9E-38 9.9E-43 289.5 25.8 249 6-258 198-463 (489)
19 2zan_A Vacuolar protein sortin 100.0 7.2E-39 2.5E-43 291.3 21.7 261 3-270 125-437 (444)
20 1ixz_A ATP-dependent metallopr 100.0 1E-37 3.5E-42 263.9 26.9 247 3-251 7-253 (254)
21 2dhr_A FTSH; AAA+ protein, hex 100.0 3.5E-38 1.2E-42 288.6 22.7 249 7-257 26-274 (499)
22 1iy2_A ATP-dependent metallopr 100.0 3.2E-36 1.1E-40 258.1 28.2 246 4-251 32-277 (278)
23 3d8b_A Fidgetin-like protein 1 100.0 1.1E-36 3.7E-41 269.9 23.4 261 3-270 75-350 (357)
24 3b9p_A CG5977-PA, isoform A; A 100.0 4.8E-37 1.6E-41 265.4 20.5 265 2-270 11-288 (297)
25 2r62_A Cell division protease 100.0 2.6E-39 9E-44 275.6 1.2 254 5-259 4-258 (268)
26 1ypw_A Transitional endoplasmi 100.0 1.4E-39 4.7E-44 314.7 -5.8 266 4-270 469-759 (806)
27 3vfd_A Spastin; ATPase, microt 100.0 2.7E-35 9.2E-40 263.9 21.3 261 2-269 105-380 (389)
28 1ypw_A Transitional endoplasmi 100.0 8.3E-33 2.8E-37 267.4 23.6 248 5-256 197-461 (806)
29 3t15_A Ribulose bisphosphate c 100.0 8.2E-29 2.8E-33 213.6 8.7 178 42-225 32-222 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 6E-28 2E-32 220.3 -5.9 205 7-229 32-262 (456)
31 3syl_A Protein CBBX; photosynt 99.9 7.2E-23 2.5E-27 177.2 16.6 212 12-237 31-265 (309)
32 3pfi_A Holliday junction ATP-d 99.9 5.8E-21 2E-25 167.4 22.6 222 2-254 19-254 (338)
33 3uk6_A RUVB-like 2; hexameric 99.9 1.2E-21 4.2E-26 173.5 17.8 222 6-256 37-332 (368)
34 3m6a_A ATP-dependent protease 99.9 3.8E-22 1.3E-26 185.4 10.8 225 10-253 79-340 (543)
35 1hqc_A RUVB; extended AAA-ATPa 99.9 2.3E-20 8E-25 162.3 19.3 224 1-254 1-238 (324)
36 2z4s_A Chromosomal replication 99.9 2.1E-20 7.2E-25 169.5 19.0 227 8-264 101-342 (440)
37 2v1u_A Cell division control p 99.9 7.2E-20 2.5E-24 162.5 21.5 227 8-256 15-278 (387)
38 1ofh_A ATP-dependent HSL prote 99.8 1.1E-20 3.6E-25 163.2 14.3 240 12-256 15-301 (310)
39 2chg_A Replication factor C sm 99.8 1.9E-19 6.7E-24 147.2 20.6 206 2-252 7-224 (226)
40 1sxj_A Activator 1 95 kDa subu 99.8 2.8E-20 9.6E-25 172.1 16.3 228 1-254 28-274 (516)
41 3u61_B DNA polymerase accessor 99.8 4.1E-20 1.4E-24 161.1 15.6 207 1-252 15-235 (324)
42 1d2n_A N-ethylmaleimide-sensit 99.8 3.9E-20 1.3E-24 157.4 15.0 211 8-232 29-247 (272)
43 1njg_A DNA polymerase III subu 99.8 1.8E-19 6.1E-24 149.2 16.1 207 2-251 13-248 (250)
44 1l8q_A Chromosomal replication 99.8 9.2E-19 3.1E-23 152.6 18.9 221 6-256 5-242 (324)
45 1g41_A Heat shock protein HSLU 99.8 5.8E-21 2E-25 171.7 4.9 169 12-193 15-188 (444)
46 2qby_B CDC6 homolog 3, cell di 99.8 1.4E-18 4.8E-23 154.3 19.5 215 11-256 19-272 (384)
47 2qby_A CDC6 homolog 1, cell di 99.8 3E-18 1E-22 151.8 21.3 225 8-256 16-274 (386)
48 1jbk_A CLPB protein; beta barr 99.8 9E-20 3.1E-24 145.8 9.7 163 4-193 14-194 (195)
49 1sxj_D Activator 1 41 kDa subu 99.8 1.1E-18 3.9E-23 153.2 17.7 215 2-252 27-261 (353)
50 3pvs_A Replication-associated 99.8 9.5E-19 3.2E-23 158.7 17.3 209 3-254 17-244 (447)
51 1r6b_X CLPA protein; AAA+, N-t 99.8 1.2E-18 4E-23 168.2 17.1 224 6-255 180-434 (758)
52 2r44_A Uncharacterized protein 99.8 9E-19 3.1E-23 153.1 14.6 221 4-258 19-301 (331)
53 1g8p_A Magnesium-chelatase 38 99.8 8.7E-18 3E-22 147.5 20.5 225 5-258 17-326 (350)
54 1fnn_A CDC6P, cell division co 99.8 6E-18 2.1E-22 150.3 19.6 225 8-256 13-276 (389)
55 1sxj_E Activator 1 40 kDa subu 99.8 3.4E-18 1.2E-22 150.5 17.5 196 1-234 3-244 (354)
56 3bos_A Putative DNA replicatio 99.8 6.9E-18 2.4E-22 140.0 18.0 205 8-252 24-241 (242)
57 1in4_A RUVB, holliday junction 99.8 3.2E-17 1.1E-21 143.6 22.9 223 2-255 15-251 (334)
58 3pxg_A Negative regulator of g 99.8 4.8E-18 1.6E-22 155.3 16.8 209 4-254 172-406 (468)
59 3hws_A ATP-dependent CLP prote 99.8 3.9E-18 1.3E-22 151.0 15.6 235 13-250 16-345 (363)
60 3te6_A Regulatory protein SIR3 99.8 2.4E-18 8E-23 148.9 12.8 214 14-255 22-316 (318)
61 1iqp_A RFCS; clamp loader, ext 99.8 4.9E-17 1.7E-21 141.1 19.9 195 1-231 14-216 (327)
62 1sxj_B Activator 1 37 kDa subu 99.8 4.4E-17 1.5E-21 141.2 19.1 206 2-252 11-229 (323)
63 3pxi_A Negative regulator of g 99.8 1.5E-17 5.3E-22 160.3 17.4 191 4-236 172-387 (758)
64 2chq_A Replication factor C sm 99.8 1.7E-17 5.7E-22 143.6 15.0 209 1-250 6-222 (319)
65 1qvr_A CLPB protein; coiled co 99.7 7.6E-18 2.6E-22 164.4 14.0 204 5-235 163-393 (854)
66 2p65_A Hypothetical protein PF 99.7 6E-18 2.1E-22 134.7 10.0 156 4-185 14-187 (187)
67 1jr3_A DNA polymerase III subu 99.7 6.2E-17 2.1E-21 143.2 16.9 207 2-251 6-241 (373)
68 4fcw_A Chaperone protein CLPB; 99.7 6.7E-17 2.3E-21 139.6 14.7 207 12-236 17-280 (311)
69 1um8_A ATP-dependent CLP prote 99.7 1.6E-16 5.5E-21 141.2 16.0 238 12-253 21-364 (376)
70 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 7.2E-17 2.5E-21 147.8 11.3 214 12-256 22-287 (500)
71 1sxj_C Activator 1 40 kDa subu 99.7 1.4E-15 4.8E-20 133.3 16.6 210 1-250 14-235 (340)
72 3pxi_A Negative regulator of g 99.7 9.5E-16 3.3E-20 147.9 15.8 199 12-236 491-726 (758)
73 1r6b_X CLPA protein; AAA+, N-t 99.6 3.9E-15 1.3E-19 143.6 16.3 200 12-235 458-716 (758)
74 1w5s_A Origin recognition comp 99.6 3.9E-14 1.3E-18 126.7 20.8 230 8-255 18-294 (412)
75 3kw6_A 26S protease regulatory 99.6 2.2E-15 7.6E-20 103.6 9.3 76 182-257 1-76 (78)
76 2krk_A 26S protease regulatory 99.6 2.7E-15 9.2E-20 104.8 8.5 77 181-257 8-84 (86)
77 3ec2_A DNA replication protein 99.6 5.6E-15 1.9E-19 117.7 10.7 139 4-164 2-145 (180)
78 2bjv_A PSP operon transcriptio 99.6 1E-14 3.6E-19 123.3 12.8 209 8-247 2-250 (265)
79 3f9v_A Minichromosome maintena 99.6 1.2E-15 4.1E-20 143.0 7.1 225 12-257 295-590 (595)
80 3vlf_B 26S protease regulatory 99.6 9.8E-15 3.3E-19 102.6 8.6 85 185-269 2-87 (88)
81 3k1j_A LON protease, ATP-depen 99.6 4.1E-14 1.4E-18 133.1 15.0 221 4-253 33-374 (604)
82 1qvr_A CLPB protein; coiled co 99.5 2.4E-14 8.2E-19 139.7 12.0 202 11-236 557-821 (854)
83 3gfo_A Cobalt import ATP-bindi 99.5 1.4E-14 4.9E-19 123.1 8.5 114 40-167 28-209 (275)
84 1ojl_A Transcriptional regulat 99.5 2.3E-14 7.8E-19 123.8 8.1 195 12-234 2-235 (304)
85 4g1u_C Hemin import ATP-bindin 99.5 1.3E-14 4.3E-19 122.9 6.2 114 40-167 31-213 (266)
86 3aji_B S6C, proteasome (prosom 99.5 3.4E-14 1.2E-18 98.8 7.2 79 185-264 2-80 (83)
87 3cmw_A Protein RECA, recombina 99.5 1.8E-14 6.3E-19 146.5 7.5 154 8-162 1016-1218(1706)
88 3tui_C Methionine import ATP-b 99.5 1.8E-14 6.2E-19 126.5 5.9 114 40-167 48-229 (366)
89 3rlf_A Maltose/maltodextrin im 99.5 2E-14 6.8E-19 127.0 5.6 114 40-167 23-199 (381)
90 1vpl_A ABC transporter, ATP-bi 99.5 3.5E-14 1.2E-18 119.5 6.8 112 40-166 35-210 (256)
91 2olj_A Amino acid ABC transpor 99.5 4.6E-14 1.6E-18 119.2 7.2 113 40-167 44-224 (263)
92 3fvq_A Fe(3+) IONS import ATP- 99.5 2.7E-14 9.3E-19 125.2 5.9 114 40-167 24-204 (359)
93 2pcj_A ABC transporter, lipopr 99.5 5.6E-14 1.9E-18 116.1 7.2 110 40-164 24-202 (224)
94 3tif_A Uncharacterized ABC tra 99.5 5.6E-14 1.9E-18 116.9 7.2 110 40-163 25-207 (235)
95 3co5_A Putative two-component 99.5 7.4E-14 2.5E-18 107.2 7.3 112 13-162 5-116 (143)
96 3n70_A Transport activator; si 99.5 2.7E-13 9.2E-18 104.3 9.7 111 13-161 2-115 (145)
97 2yyz_A Sugar ABC transporter, 99.4 1.4E-13 4.9E-18 120.9 8.2 113 40-166 23-198 (359)
98 1z47_A CYSA, putative ABC-tran 99.4 1.4E-13 4.7E-18 120.7 7.6 114 40-167 35-211 (355)
99 1b0u_A Histidine permease; ABC 99.4 9.4E-14 3.2E-18 117.3 6.2 113 40-167 26-218 (262)
100 1ji0_A ABC transporter; ATP bi 99.4 8.5E-14 2.9E-18 116.1 5.4 113 40-167 26-204 (240)
101 1a5t_A Delta prime, HOLB; zinc 99.4 4.8E-12 1.6E-16 110.6 16.6 172 17-228 7-206 (334)
102 1g6h_A High-affinity branched- 99.4 3.8E-13 1.3E-17 113.3 9.2 58 95-167 161-218 (257)
103 1sgw_A Putative ABC transporte 99.4 1.3E-13 4.3E-18 113.0 6.0 113 40-167 29-198 (214)
104 2it1_A 362AA long hypothetical 99.4 1.5E-13 5.3E-18 120.8 6.9 113 40-166 23-198 (362)
105 2onk_A Molybdate/tungstate ABC 99.4 5.9E-14 2E-18 117.0 4.0 113 40-167 19-192 (240)
106 1oxx_K GLCV, glucose, ABC tran 99.4 5.7E-14 1.9E-18 123.4 4.1 114 40-167 25-206 (353)
107 3d31_A Sulfate/molybdate ABC t 99.4 2.4E-13 8.2E-18 119.0 8.1 113 40-166 20-192 (348)
108 1v43_A Sugar-binding transport 99.4 1.9E-13 6.5E-18 120.6 7.4 113 40-166 31-206 (372)
109 2ff7_A Alpha-hemolysin translo 99.4 3.7E-13 1.3E-17 112.7 8.1 111 40-166 29-208 (247)
110 1g29_1 MALK, maltose transport 99.4 2.2E-13 7.7E-18 120.3 7.0 113 40-166 23-204 (372)
111 2qi9_C Vitamin B12 import ATP- 99.4 1.8E-13 6.3E-18 114.6 5.2 112 40-167 20-198 (249)
112 2yz2_A Putative ABC transporte 99.4 1E-12 3.5E-17 111.2 9.7 113 40-167 27-203 (266)
113 2d2e_A SUFC protein; ABC-ATPas 99.4 5.4E-13 1.9E-17 111.9 7.9 112 40-166 23-207 (250)
114 3nh6_A ATP-binding cassette SU 99.4 2.8E-13 9.5E-18 116.7 6.2 111 40-166 74-253 (306)
115 2ixe_A Antigen peptide transpo 99.4 1.2E-12 4.2E-17 111.0 10.1 112 40-165 39-220 (271)
116 2dzn_B 26S protease regulatory 99.4 1.2E-13 4.1E-18 95.7 2.9 78 187-264 1-79 (82)
117 2ihy_A ABC transporter, ATP-bi 99.4 2.8E-13 9.5E-18 115.4 5.5 113 40-167 41-228 (279)
118 2zu0_C Probable ATP-dependent 99.4 1.3E-12 4.5E-17 110.6 9.4 112 40-166 40-228 (267)
119 2ghi_A Transport protein; mult 99.4 1.7E-12 5.9E-17 109.5 9.4 111 40-166 40-218 (260)
120 2cbz_A Multidrug resistance-as 99.4 2.1E-12 7.3E-17 107.4 9.2 114 40-166 25-193 (237)
121 2nq2_C Hypothetical ABC transp 99.3 1.1E-12 3.7E-17 110.2 5.6 114 40-167 25-194 (253)
122 2gno_A DNA polymerase III, gam 99.3 2.4E-11 8.3E-16 104.7 13.9 142 16-197 1-152 (305)
123 1mv5_A LMRA, multidrug resista 99.3 1E-12 3.6E-17 109.7 4.8 110 40-165 22-201 (243)
124 3gd7_A Fusion complex of cysti 99.3 2.6E-12 8.8E-17 114.1 6.5 110 40-165 41-217 (390)
125 2pjz_A Hypothetical protein ST 99.3 1.1E-11 3.9E-16 104.5 9.8 109 40-167 25-190 (263)
126 4a82_A Cystic fibrosis transme 99.3 6.3E-12 2.2E-16 117.6 7.7 111 40-166 361-540 (578)
127 3qf4_B Uncharacterized ABC tra 99.3 8.1E-12 2.8E-16 117.3 8.3 112 40-167 375-555 (598)
128 2kjq_A DNAA-related protein; s 99.3 6E-12 2.1E-16 97.2 6.1 97 45-171 35-137 (149)
129 2pze_A Cystic fibrosis transme 99.2 1.4E-11 4.7E-16 102.0 8.2 110 40-165 28-193 (229)
130 3b5x_A Lipid A export ATP-bind 99.2 1.7E-11 6E-16 114.7 9.8 111 40-166 363-543 (582)
131 4gp7_A Metallophosphoesterase; 99.2 6.4E-13 2.2E-17 105.0 -0.2 113 40-167 3-164 (171)
132 2fna_A Conserved hypothetical 99.2 1.1E-09 3.6E-14 95.6 19.4 190 6-228 7-251 (357)
133 3qf4_A ABC transporter, ATP-bi 99.2 2.4E-11 8.4E-16 113.8 9.3 109 41-165 364-541 (587)
134 1ye8_A Protein THEP1, hypothet 99.2 6.1E-11 2.1E-15 94.2 10.2 121 48-186 2-165 (178)
135 3b60_A Lipid A export ATP-bind 99.2 1.7E-11 5.7E-16 114.9 8.1 111 40-166 363-543 (582)
136 3ozx_A RNAse L inhibitor; ATP 99.2 6E-12 2.1E-16 116.4 4.2 112 42-167 290-451 (538)
137 4akg_A Glutathione S-transfera 99.2 2.6E-10 8.7E-15 120.9 16.2 139 45-199 1266-1433(2695)
138 2w58_A DNAI, primosome compone 99.2 9.1E-11 3.1E-15 94.7 9.9 100 7-117 20-127 (202)
139 2qen_A Walker-type ATPase; unk 99.2 3.6E-09 1.2E-13 92.0 20.7 193 7-228 7-247 (350)
140 3j16_B RLI1P; ribosome recycli 99.2 4.9E-11 1.7E-15 111.6 8.0 62 91-167 225-286 (608)
141 3ozx_A RNAse L inhibitor; ATP 99.2 4.1E-11 1.4E-15 110.8 7.1 61 91-167 142-202 (538)
142 2bbs_A Cystic fibrosis transme 99.1 9.3E-11 3.2E-15 100.2 7.7 110 40-165 58-222 (290)
143 2yl4_A ATP-binding cassette SU 99.1 6.7E-11 2.3E-15 111.0 7.4 111 40-166 364-546 (595)
144 1yqt_A RNAse L inhibitor; ATP- 99.1 5.9E-11 2E-15 109.9 6.8 62 91-167 162-223 (538)
145 2ehv_A Hypothetical protein PH 99.1 6.3E-11 2.2E-15 98.6 6.2 114 42-165 26-185 (251)
146 4f4c_A Multidrug resistance pr 99.1 7.3E-11 2.5E-15 119.7 7.7 127 40-185 1099-1300(1321)
147 3bk7_A ABC transporter ATP-bin 99.1 1E-10 3.4E-15 109.7 6.3 62 91-167 232-293 (607)
148 2vhj_A Ntpase P4, P4; non- hyd 99.1 8.5E-11 2.9E-15 101.0 5.0 119 42-167 119-240 (331)
149 3bk7_A ABC transporter ATP-bin 99.1 6.8E-11 2.3E-15 110.8 4.6 111 43-167 379-537 (607)
150 4f4c_A Multidrug resistance pr 99.1 1.8E-10 6.1E-15 116.9 7.8 112 40-167 438-618 (1321)
151 1yqt_A RNAse L inhibitor; ATP- 99.0 8.2E-11 2.8E-15 109.0 3.9 111 43-167 309-467 (538)
152 3g5u_A MCG1178, multidrug resi 99.0 2E-10 6.7E-15 116.3 6.5 112 40-167 410-590 (1284)
153 3g5u_A MCG1178, multidrug resi 99.0 3E-10 1E-14 115.0 7.7 112 40-167 1053-1235(1284)
154 2eyu_A Twitching motility prot 99.0 7.7E-10 2.6E-14 93.2 8.6 104 38-163 17-134 (261)
155 3j16_B RLI1P; ribosome recycli 99.0 2.8E-10 9.5E-15 106.6 6.5 107 47-167 379-533 (608)
156 3f8t_A Predicted ATPase involv 99.0 6.9E-09 2.4E-13 93.2 14.3 221 14-261 215-490 (506)
157 2w0m_A SSO2452; RECA, SSPF, un 99.0 1.1E-09 3.9E-14 89.7 8.5 109 42-162 19-168 (235)
158 2qgz_A Helicase loader, putati 99.0 7.1E-10 2.4E-14 95.7 7.1 98 8-117 120-226 (308)
159 3thx_B DNA mismatch repair pro 98.9 2.8E-09 9.7E-14 103.7 11.0 112 41-166 668-800 (918)
160 2cvh_A DNA repair and recombin 98.9 1.9E-09 6.5E-14 87.8 8.1 118 42-165 16-159 (220)
161 2pt7_A CAG-ALFA; ATPase, prote 98.9 4.3E-10 1.5E-14 98.0 3.6 101 41-163 166-276 (330)
162 3ux8_A Excinuclease ABC, A sub 98.9 1.9E-09 6.6E-14 102.5 8.4 60 91-165 206-267 (670)
163 1ny5_A Transcriptional regulat 98.9 8.4E-09 2.9E-13 91.8 12.0 207 12-250 137-383 (387)
164 2iw3_A Elongation factor 3A; a 98.9 1.3E-09 4.3E-14 106.4 7.1 110 40-167 455-610 (986)
165 4a74_A DNA repair and recombin 98.9 8.9E-10 3.1E-14 90.4 4.9 39 42-80 21-68 (231)
166 3jvv_A Twitching mobility prot 98.9 3.6E-09 1.2E-13 92.9 8.8 101 43-165 120-234 (356)
167 2iw3_A Elongation factor 3A; a 98.9 1.4E-09 5E-14 106.0 6.8 57 92-166 906-962 (986)
168 2r2a_A Uncharacterized protein 98.9 2.1E-09 7E-14 86.8 6.5 128 46-187 5-156 (199)
169 1n0w_A DNA repair protein RAD5 98.9 2.1E-09 7.2E-14 88.9 6.6 122 42-166 20-178 (243)
170 3ux8_A Excinuclease ABC, A sub 98.9 3.2E-09 1.1E-13 101.0 8.1 60 91-165 547-609 (670)
171 1svm_A Large T antigen; AAA+ f 98.8 2.2E-09 7.4E-14 94.9 5.4 121 40-183 163-284 (377)
172 1tf7_A KAIC; homohexamer, hexa 98.8 1E-08 3.4E-13 94.9 10.0 116 40-165 32-188 (525)
173 4aby_A DNA repair protein RECN 98.8 8.8E-09 3E-13 92.2 9.3 59 91-165 299-359 (415)
174 3thx_A DNA mismatch repair pro 98.8 1.1E-08 3.9E-13 99.8 10.4 110 41-165 657-788 (934)
175 1pzn_A RAD51, DNA repair and r 98.8 1E-08 3.4E-13 90.0 7.6 125 40-166 125-290 (349)
176 3cmu_A Protein RECA, recombina 98.8 3E-08 1E-12 102.6 11.1 125 34-159 1412-1561(2050)
177 1tue_A Replication protein E1; 98.7 7.9E-09 2.7E-13 83.1 5.0 34 42-75 54-87 (212)
178 2ewv_A Twitching motility prot 98.7 2.2E-08 7.6E-13 88.5 7.1 106 36-163 126-245 (372)
179 1cr0_A DNA primase/helicase; R 98.7 6E-08 2E-12 82.9 9.3 29 41-69 30-58 (296)
180 3hr8_A Protein RECA; alpha and 98.7 4.4E-08 1.5E-12 85.8 8.4 120 42-161 57-197 (356)
181 1nlf_A Regulatory protein REPA 98.7 1.9E-08 6.5E-13 85.3 5.9 27 42-68 26-52 (279)
182 3lda_A DNA repair protein RAD5 98.7 2.6E-08 8.9E-13 88.7 6.8 120 42-163 174-329 (400)
183 1wb9_A DNA mismatch repair pro 98.6 1E-07 3.5E-12 91.8 10.7 109 44-166 605-734 (800)
184 2o8b_B DNA mismatch repair pro 98.6 9.5E-08 3.3E-12 94.3 10.4 110 46-169 789-919 (1022)
185 3dzd_A Transcriptional regulat 98.6 5.6E-08 1.9E-12 85.8 7.8 193 13-234 130-361 (368)
186 4akg_A Glutathione S-transfera 98.6 1.2E-06 4.2E-11 93.3 19.0 165 46-233 645-839 (2695)
187 3b85_A Phosphate starvation-in 98.6 2.2E-08 7.6E-13 81.3 4.7 26 44-69 20-45 (208)
188 2zr9_A Protein RECA, recombina 98.6 5E-08 1.7E-12 85.5 6.2 120 42-163 57-199 (349)
189 1znw_A Guanylate kinase, GMP k 98.6 4.2E-09 1.4E-13 85.5 -0.8 30 41-70 15-44 (207)
190 1z6t_A APAF-1, apoptotic prote 98.6 1.5E-06 5E-11 81.2 16.3 174 9-226 121-327 (591)
191 3sfz_A APAF-1, apoptotic pepti 98.6 2E-06 6.9E-11 86.5 17.9 173 10-224 122-325 (1249)
192 2dr3_A UPF0273 protein PH0284; 98.5 3.9E-07 1.3E-11 75.2 9.8 38 42-79 19-59 (247)
193 1s96_A Guanylate kinase, GMP k 98.5 2.1E-07 7.2E-12 76.2 7.9 29 43-71 13-41 (219)
194 2z43_A DNA repair and recombin 98.5 1.1E-07 3.6E-12 82.6 6.0 121 42-164 103-260 (324)
195 1v5w_A DMC1, meiotic recombina 98.5 1.5E-07 5.1E-12 82.3 6.8 122 42-165 118-277 (343)
196 1tf7_A KAIC; homohexamer, hexa 98.5 1.5E-07 5E-12 87.0 7.0 111 41-162 276-417 (525)
197 1xp8_A RECA protein, recombina 98.5 4.7E-07 1.6E-11 79.7 9.1 120 42-163 70-212 (366)
198 2vf7_A UVRA2, excinuclease ABC 98.5 4.7E-08 1.6E-12 94.4 2.9 57 94-165 737-796 (842)
199 2i3b_A HCR-ntpase, human cance 98.5 5.1E-08 1.7E-12 78.0 2.6 25 46-70 1-25 (189)
200 3qf7_A RAD50; ABC-ATPase, ATPa 98.5 9.8E-07 3.3E-11 77.7 10.9 46 104-164 302-347 (365)
201 1zp6_A Hypothetical protein AT 98.5 1.3E-07 4.5E-12 75.2 4.7 42 42-83 5-46 (191)
202 3pih_A Uvrabc system protein A 98.5 2.2E-07 7.5E-12 90.5 7.1 60 91-165 809-871 (916)
203 1ewq_A DNA mismatch repair pro 98.4 5.5E-07 1.9E-11 86.3 8.7 104 46-165 576-701 (765)
204 3cmu_A Protein RECA, recombina 98.4 4.3E-07 1.5E-11 94.1 8.4 132 34-165 717-872 (2050)
205 2npi_A Protein CLP1; CLP1-PCF1 98.4 1.4E-07 4.9E-12 85.5 4.3 31 39-69 131-161 (460)
206 1e69_A Chromosome segregation 98.4 1.5E-06 5E-11 75.3 10.5 45 104-164 240-284 (322)
207 1u94_A RECA protein, recombina 98.4 8.7E-07 3E-11 77.7 8.8 120 42-163 59-201 (356)
208 1jr3_D DNA polymerase III, del 98.4 1.2E-05 4E-10 70.0 15.9 175 45-254 17-209 (343)
209 3qkt_A DNA double-strand break 98.4 1.6E-06 5.6E-11 75.5 10.0 51 98-163 265-315 (339)
210 3io5_A Recombination and repai 98.3 1.1E-06 3.9E-11 75.2 7.6 120 42-162 25-172 (333)
211 3szr_A Interferon-induced GTP- 98.3 4.9E-07 1.7E-11 84.9 5.7 109 49-164 48-198 (608)
212 2ygr_A Uvrabc system protein A 98.3 7.5E-07 2.6E-11 86.8 7.1 58 93-165 869-929 (993)
213 1u0j_A DNA replication protein 98.3 1.4E-06 4.8E-11 73.0 7.7 28 44-71 102-129 (267)
214 2r6f_A Excinuclease ABC subuni 98.3 9.3E-07 3.2E-11 85.9 7.5 58 93-165 851-911 (972)
215 2i1q_A DNA repair and recombin 98.3 6.9E-07 2.4E-11 77.2 5.8 117 42-161 94-258 (322)
216 1qhx_A CPT, protein (chloramph 98.3 2.8E-06 9.7E-11 66.5 8.7 37 46-82 3-39 (178)
217 3vaa_A Shikimate kinase, SK; s 98.3 4.7E-07 1.6E-11 72.7 4.0 38 40-77 19-56 (199)
218 3vkg_A Dynein heavy chain, cyt 98.3 8.1E-06 2.8E-10 87.9 14.1 139 45-198 1303-1470(3245)
219 1vma_A Cell division protein F 98.3 1E-05 3.6E-10 69.4 12.5 73 42-114 100-195 (306)
220 2a5y_B CED-4; apoptosis; HET: 98.3 2.5E-05 8.4E-10 72.4 15.7 168 15-224 131-334 (549)
221 2r6a_A DNAB helicase, replicat 98.2 5.6E-06 1.9E-10 75.0 10.9 39 41-79 198-240 (454)
222 1tq4_A IIGP1, interferon-induc 98.2 2.5E-07 8.7E-12 82.6 1.7 23 46-68 69-91 (413)
223 2gza_A Type IV secretion syste 98.2 9.6E-07 3.3E-11 77.7 4.8 75 40-114 169-261 (361)
224 1htw_A HI0065; nucleotide-bind 98.2 1.1E-06 3.7E-11 68.1 3.8 43 39-81 26-69 (158)
225 1rj9_A FTSY, signal recognitio 98.1 1.2E-05 4.1E-10 68.9 10.3 35 45-79 101-137 (304)
226 2p5t_B PEZT; postsegregational 98.1 6.7E-06 2.3E-10 68.5 8.5 40 43-82 29-68 (253)
227 3cmw_A Protein RECA, recombina 98.1 3.3E-06 1.1E-10 86.6 7.7 78 42-119 728-824 (1706)
228 2zts_A Putative uncharacterize 98.1 7.8E-06 2.7E-10 67.3 8.7 37 42-78 26-66 (251)
229 1gvn_B Zeta; postsegregational 98.1 1.1E-05 3.6E-10 68.7 9.4 39 44-82 31-69 (287)
230 2yhs_A FTSY, cell division pro 98.1 2.2E-05 7.5E-10 71.3 11.2 39 40-78 287-327 (503)
231 3sop_A Neuronal-specific septi 98.1 9.2E-06 3.2E-10 68.5 8.0 22 48-69 4-25 (270)
232 2obl_A ESCN; ATPase, hydrolase 98.1 8.2E-06 2.8E-10 71.3 7.6 121 41-163 66-229 (347)
233 1kag_A SKI, shikimate kinase I 98.1 2.9E-06 9.8E-11 66.2 4.3 30 46-75 4-33 (173)
234 4eun_A Thermoresistant glucoki 98.1 3.1E-06 1E-10 67.9 4.5 37 44-82 27-63 (200)
235 1z6g_A Guanylate kinase; struc 98.1 2.1E-06 7.3E-11 70.0 3.5 37 40-77 17-53 (218)
236 3tr0_A Guanylate kinase, GMP k 98.0 2.4E-06 8.4E-11 68.4 3.7 29 42-70 3-31 (205)
237 2rhm_A Putative kinase; P-loop 98.0 3.5E-06 1.2E-10 66.7 4.6 35 43-77 2-36 (193)
238 1y63_A LMAJ004144AAA protein; 98.0 3E-06 1E-10 67.1 4.1 35 42-76 6-41 (184)
239 2b8t_A Thymidine kinase; deoxy 98.0 8.6E-06 3E-10 66.6 6.9 98 45-163 11-127 (223)
240 3bh0_A DNAB-like replicative h 98.0 1.8E-05 6.2E-10 68.2 9.0 39 41-79 63-104 (315)
241 2c9o_A RUVB-like 1; hexameric 98.0 2.5E-05 8.6E-10 70.7 10.1 128 106-255 296-438 (456)
242 2q6t_A DNAB replication FORK h 98.0 1.3E-05 4.4E-10 72.4 8.1 39 41-79 195-237 (444)
243 3uie_A Adenylyl-sulfate kinase 98.0 4.3E-06 1.5E-10 67.0 4.4 40 43-82 22-64 (200)
244 2ius_A DNA translocase FTSK; n 98.0 2.2E-05 7.6E-10 71.8 9.5 77 105-195 296-375 (512)
245 3trf_A Shikimate kinase, SK; a 98.0 3.7E-06 1.3E-10 66.3 3.9 32 46-77 5-36 (185)
246 1p9r_A General secretion pathw 98.0 1.1E-05 3.8E-10 72.1 7.2 70 45-114 166-245 (418)
247 3c8u_A Fructokinase; YP_612366 98.0 4.4E-06 1.5E-10 67.5 4.2 37 44-80 20-61 (208)
248 3b9q_A Chloroplast SRP recepto 98.0 6.4E-06 2.2E-10 70.6 5.3 64 18-81 70-137 (302)
249 2orw_A Thymidine kinase; TMTK, 98.0 3.6E-06 1.2E-10 66.8 3.4 23 46-68 3-25 (184)
250 2oap_1 GSPE-2, type II secreti 98.0 1.6E-06 5.6E-11 79.5 1.5 72 43-114 257-342 (511)
251 3a4m_A L-seryl-tRNA(SEC) kinas 98.0 9.4E-05 3.2E-09 61.8 12.2 39 45-83 3-44 (260)
252 3iij_A Coilin-interacting nucl 98.0 5.9E-06 2E-10 64.9 4.5 34 44-77 9-42 (180)
253 3kl4_A SRP54, signal recogniti 98.0 4.3E-05 1.5E-09 68.5 10.6 195 45-256 96-342 (433)
254 3vkg_A Dynein heavy chain, cyt 98.0 8.8E-05 3E-09 80.1 14.5 126 46-193 604-749 (3245)
255 1knq_A Gluconate kinase; ALFA/ 98.0 6.4E-06 2.2E-10 64.4 4.5 31 45-75 7-37 (175)
256 2v9p_A Replication protein E1; 97.9 5.2E-06 1.8E-10 71.1 4.0 36 40-76 120-155 (305)
257 2px0_A Flagellar biosynthesis 97.9 1.2E-05 4.3E-10 68.6 6.3 26 44-69 103-128 (296)
258 2jeo_A Uridine-cytidine kinase 97.9 5.5E-06 1.9E-10 68.7 3.6 32 40-71 19-50 (245)
259 2pez_A Bifunctional 3'-phospho 97.9 9.5E-06 3.3E-10 63.7 4.8 39 44-82 3-44 (179)
260 3kb2_A SPBC2 prophage-derived 97.9 8.1E-06 2.8E-10 63.3 4.3 31 48-78 3-33 (173)
261 3e70_C DPA, signal recognition 97.9 3.7E-05 1.3E-09 66.5 8.8 38 43-80 126-165 (328)
262 2og2_A Putative signal recogni 97.9 8.8E-06 3E-10 71.3 4.9 42 40-81 151-194 (359)
263 2j41_A Guanylate kinase; GMP, 97.9 7.7E-06 2.6E-10 65.5 3.8 28 43-70 3-30 (207)
264 3t61_A Gluconokinase; PSI-biol 97.9 1E-05 3.5E-10 64.8 4.4 31 46-76 18-48 (202)
265 3nwj_A ATSK2; P loop, shikimat 97.9 6.3E-06 2.2E-10 68.7 3.2 37 41-77 40-79 (250)
266 2bdt_A BH3686; alpha-beta prot 97.9 9E-06 3.1E-10 64.4 4.0 35 47-82 3-37 (189)
267 3lnc_A Guanylate kinase, GMP k 97.9 4E-06 1.4E-10 68.8 1.9 31 40-70 21-52 (231)
268 3umf_A Adenylate kinase; rossm 97.9 2.8E-05 9.6E-10 63.3 6.8 42 42-85 25-66 (217)
269 1q57_A DNA primase/helicase; d 97.9 4.3E-05 1.5E-09 70.1 8.8 38 42-79 238-279 (503)
270 1ls1_A Signal recognition part 97.9 0.00015 5E-09 61.9 11.6 90 45-144 97-209 (295)
271 3cm0_A Adenylate kinase; ATP-b 97.9 9E-06 3.1E-10 64.1 3.7 31 45-75 3-33 (186)
272 2iyv_A Shikimate kinase, SK; t 97.8 9.3E-06 3.2E-10 64.0 3.7 31 47-77 3-33 (184)
273 1vt4_I APAF-1 related killer D 97.8 0.0001 3.5E-09 72.5 11.5 42 15-68 131-172 (1221)
274 1via_A Shikimate kinase; struc 97.8 1.2E-05 4.1E-10 62.9 4.3 29 48-76 6-34 (175)
275 2r8r_A Sensor protein; KDPD, P 97.8 0.00029 1E-08 57.4 12.6 23 47-69 7-29 (228)
276 3dm5_A SRP54, signal recogniti 97.8 0.00015 5.1E-09 65.1 11.8 70 45-114 99-191 (443)
277 1tev_A UMP-CMP kinase; ploop, 97.8 1E-05 3.5E-10 64.0 3.8 31 46-76 3-33 (196)
278 2cdn_A Adenylate kinase; phosp 97.8 1.2E-05 4E-10 64.4 4.1 34 44-77 18-51 (201)
279 4a1f_A DNAB helicase, replicat 97.8 4.9E-05 1.7E-09 66.0 8.3 38 42-79 42-82 (338)
280 2c95_A Adenylate kinase 1; tra 97.8 1.2E-05 4E-10 63.8 3.9 33 45-77 8-40 (196)
281 2ze6_A Isopentenyl transferase 97.8 1.2E-05 4E-10 67.1 4.1 33 48-80 3-35 (253)
282 3asz_A Uridine kinase; cytidin 97.8 9.9E-06 3.4E-10 65.3 3.5 28 44-71 4-31 (211)
283 1kgd_A CASK, peripheral plasma 97.8 1.2E-05 3.9E-10 63.5 3.8 27 45-71 4-30 (180)
284 1lvg_A Guanylate kinase, GMP k 97.8 9.7E-06 3.3E-10 65.0 3.2 27 44-70 2-28 (198)
285 1ly1_A Polynucleotide kinase; 97.8 1.2E-05 4E-10 62.9 3.6 35 46-82 2-37 (181)
286 1aky_A Adenylate kinase; ATP:A 97.8 1.9E-05 6.5E-10 64.1 4.7 33 45-77 3-35 (220)
287 1zd8_A GTP:AMP phosphotransfer 97.8 1.4E-05 4.6E-10 65.4 3.8 34 44-77 5-38 (227)
288 3lw7_A Adenylate kinase relate 97.8 1.4E-05 4.9E-10 61.8 3.7 29 48-77 3-31 (179)
289 2vli_A Antibiotic resistance p 97.8 1.2E-05 4.1E-10 63.1 3.3 31 45-75 4-34 (183)
290 1cke_A CK, MSSA, protein (cyti 97.8 1.8E-05 6.3E-10 64.3 4.5 31 46-76 5-35 (227)
291 1zuh_A Shikimate kinase; alpha 97.8 1.5E-05 5.1E-10 61.8 3.7 31 47-77 8-38 (168)
292 2iut_A DNA translocase FTSK; n 97.8 0.00038 1.3E-08 64.2 13.5 74 107-194 345-420 (574)
293 1kht_A Adenylate kinase; phosp 97.8 1.6E-05 5.4E-10 62.8 3.8 26 46-71 3-28 (192)
294 3a00_A Guanylate kinase, GMP k 97.8 1.4E-05 4.9E-10 63.2 3.4 25 46-70 1-25 (186)
295 3ice_A Transcription terminati 97.8 0.00023 7.7E-09 62.6 11.2 122 41-162 169-325 (422)
296 2bbw_A Adenylate kinase 4, AK4 97.7 1.9E-05 6.3E-10 65.4 4.2 31 45-75 26-56 (246)
297 3tlx_A Adenylate kinase 2; str 97.7 1.8E-05 6.2E-10 65.5 4.0 34 44-77 27-60 (243)
298 2bwj_A Adenylate kinase 5; pho 97.7 1.7E-05 5.7E-10 63.1 3.7 32 45-76 11-42 (199)
299 2qm8_A GTPase/ATPase; G protei 97.7 5.8E-05 2E-09 65.6 7.4 29 41-69 50-78 (337)
300 3bgw_A DNAB-like replicative h 97.7 0.0001 3.5E-09 66.5 9.2 38 42-79 193-233 (444)
301 1qf9_A UMP/CMP kinase, protein 97.7 2.2E-05 7.5E-10 62.0 4.3 33 45-77 5-37 (194)
302 1e6c_A Shikimate kinase; phosp 97.7 1.8E-05 6.3E-10 61.4 3.7 30 47-76 3-32 (173)
303 3tau_A Guanylate kinase, GMP k 97.7 1.9E-05 6.4E-10 63.8 3.8 28 44-71 6-33 (208)
304 1ukz_A Uridylate kinase; trans 97.7 2.5E-05 8.6E-10 62.5 4.5 33 45-77 14-46 (203)
305 1rz3_A Hypothetical protein rb 97.7 7.1E-05 2.4E-09 59.9 7.1 28 43-70 19-46 (201)
306 2qt1_A Nicotinamide riboside k 97.7 2E-05 6.9E-10 63.3 3.8 34 43-76 18-52 (207)
307 4e22_A Cytidylate kinase; P-lo 97.7 2.7E-05 9.2E-10 64.8 4.6 32 44-75 25-56 (252)
308 1jjv_A Dephospho-COA kinase; P 97.7 3.1E-05 1.1E-09 62.1 4.8 33 48-83 4-36 (206)
309 3dl0_A Adenylate kinase; phosp 97.7 2.1E-05 7.2E-10 63.6 3.6 30 48-77 2-31 (216)
310 3fb4_A Adenylate kinase; psych 97.7 2.1E-05 7.3E-10 63.5 3.5 30 48-77 2-31 (216)
311 2if2_A Dephospho-COA kinase; a 97.7 2.2E-05 7.5E-10 62.8 3.4 29 48-77 3-31 (204)
312 1zak_A Adenylate kinase; ATP:A 97.7 2.4E-05 8.2E-10 63.6 3.7 31 45-75 4-34 (222)
313 3upu_A ATP-dependent DNA helic 97.7 4E-05 1.4E-09 69.5 5.4 56 2-70 14-69 (459)
314 1ak2_A Adenylate kinase isoenz 97.7 4E-05 1.4E-09 62.9 4.8 33 45-77 15-47 (233)
315 3be4_A Adenylate kinase; malar 97.7 2.3E-05 7.9E-10 63.6 3.3 32 46-77 5-36 (217)
316 2pt5_A Shikimate kinase, SK; a 97.7 2.8E-05 9.7E-10 60.1 3.7 29 48-76 2-30 (168)
317 3sr0_A Adenylate kinase; phosp 97.6 3.6E-05 1.2E-09 62.1 4.3 35 48-84 2-36 (206)
318 2qor_A Guanylate kinase; phosp 97.6 3.3E-05 1.1E-09 62.0 4.0 29 43-71 9-37 (204)
319 2xau_A PRE-mRNA-splicing facto 97.6 0.00014 4.7E-09 70.1 8.8 58 9-68 72-131 (773)
320 1m7g_A Adenylylsulfate kinase; 97.6 4.4E-05 1.5E-09 61.6 4.4 41 42-82 21-65 (211)
321 3aez_A Pantothenate kinase; tr 97.6 3.2E-05 1.1E-09 66.5 3.8 28 43-70 87-114 (312)
322 2v54_A DTMP kinase, thymidylat 97.6 4.9E-05 1.7E-09 60.7 4.5 34 45-78 3-37 (204)
323 3ney_A 55 kDa erythrocyte memb 97.6 4.2E-05 1.4E-09 61.3 4.1 32 40-71 13-44 (197)
324 3zvl_A Bifunctional polynucleo 97.6 0.00034 1.2E-08 62.5 10.5 32 44-75 256-287 (416)
325 3r20_A Cytidylate kinase; stru 97.6 5.5E-05 1.9E-09 62.2 4.5 32 45-76 8-39 (233)
326 2ga8_A Hypothetical 39.9 kDa p 97.6 3.9E-05 1.3E-09 66.8 3.7 49 15-74 2-52 (359)
327 2jaq_A Deoxyguanosine kinase; 97.6 5.2E-05 1.8E-09 60.4 4.1 29 48-76 2-30 (205)
328 3crm_A TRNA delta(2)-isopenten 97.6 5.3E-05 1.8E-09 65.3 4.3 34 46-79 5-38 (323)
329 1uf9_A TT1252 protein; P-loop, 97.5 6.7E-05 2.3E-09 59.7 4.4 36 45-83 7-42 (203)
330 2yvu_A Probable adenylyl-sulfa 97.5 9.8E-05 3.4E-09 58.2 5.3 40 43-82 10-52 (186)
331 2pbr_A DTMP kinase, thymidylat 97.5 7.3E-05 2.5E-09 59.0 4.5 31 48-78 2-35 (195)
332 2dpy_A FLII, flagellum-specifi 97.5 7.1E-05 2.4E-09 67.3 4.9 123 41-163 152-318 (438)
333 2plr_A DTMP kinase, probable t 97.5 5.2E-05 1.8E-09 60.7 3.6 27 46-72 4-30 (213)
334 1e4v_A Adenylate kinase; trans 97.5 6.1E-05 2.1E-09 60.8 3.9 30 48-77 2-31 (214)
335 1zu4_A FTSY; GTPase, signal re 97.5 0.00022 7.5E-09 61.5 7.5 29 41-69 100-128 (320)
336 1sq5_A Pantothenate kinase; P- 97.5 6.5E-05 2.2E-09 64.4 3.9 28 44-71 78-105 (308)
337 3euj_A Chromosome partition pr 97.5 2.9E-05 9.8E-10 70.5 1.7 42 40-82 24-67 (483)
338 2xb4_A Adenylate kinase; ATP-b 97.5 7.9E-05 2.7E-09 60.7 4.3 29 48-76 2-30 (223)
339 1nks_A Adenylate kinase; therm 97.5 4.2E-05 1.4E-09 60.3 2.5 34 48-81 3-39 (194)
340 1lw7_A Transcriptional regulat 97.5 5.9E-05 2E-09 66.2 3.6 35 39-73 161-197 (365)
341 3e1s_A Exodeoxyribonuclease V, 97.5 0.0001 3.6E-09 68.6 5.4 34 46-79 204-240 (574)
342 1vht_A Dephospho-COA kinase; s 97.5 9.9E-05 3.4E-09 59.7 4.7 31 45-76 3-33 (218)
343 2z0h_A DTMP kinase, thymidylat 97.5 8.9E-05 3E-09 58.7 4.3 30 48-77 2-34 (197)
344 2grj_A Dephospho-COA kinase; T 97.5 7E-05 2.4E-09 59.8 3.6 36 46-83 12-47 (192)
345 1q3t_A Cytidylate kinase; nucl 97.5 0.00011 3.6E-09 60.4 4.9 33 44-76 14-46 (236)
346 2qag_B Septin-6, protein NEDD5 97.5 5.2E-05 1.8E-09 67.8 2.9 30 40-69 34-65 (427)
347 3ake_A Cytidylate kinase; CMP 97.4 0.00011 3.6E-09 58.8 4.5 29 48-76 4-32 (208)
348 2wwf_A Thymidilate kinase, put 97.4 3.2E-05 1.1E-09 62.1 1.3 26 45-70 9-34 (212)
349 3kta_A Chromosome segregation 97.4 6.1E-05 2.1E-09 59.1 2.7 28 43-71 24-51 (182)
350 1uj2_A Uridine-cytidine kinase 97.4 0.00014 4.6E-09 60.4 4.8 29 45-73 21-49 (252)
351 3a8t_A Adenylate isopentenyltr 97.4 0.00011 3.8E-09 63.5 4.1 36 45-80 39-74 (339)
352 1nn5_A Similar to deoxythymidy 97.4 8.1E-05 2.8E-09 59.8 2.9 27 44-70 7-33 (215)
353 2fz4_A DNA repair protein RAD2 97.4 0.00072 2.5E-08 55.6 8.7 34 47-80 109-142 (237)
354 1g5t_A COB(I)alamin adenosyltr 97.3 0.0023 7.8E-08 50.9 11.0 103 46-162 28-163 (196)
355 1nij_A Hypothetical protein YJ 97.3 0.00011 3.8E-09 63.3 3.4 24 47-70 5-28 (318)
356 3foz_A TRNA delta(2)-isopenten 97.3 0.00015 5.3E-09 61.9 4.2 35 45-79 9-43 (316)
357 3tqc_A Pantothenate kinase; bi 97.3 0.00014 4.9E-09 62.6 4.0 27 45-71 91-117 (321)
358 3cr8_A Sulfate adenylyltranfer 97.3 0.00042 1.4E-08 64.1 7.3 41 43-83 366-410 (552)
359 1w4r_A Thymidine kinase; type 97.3 0.00043 1.5E-08 55.1 6.1 35 45-79 19-56 (195)
360 1ex7_A Guanylate kinase; subst 97.3 0.0002 6.8E-09 56.8 4.2 24 48-71 3-26 (186)
361 2h92_A Cytidylate kinase; ross 97.3 0.00022 7.6E-09 57.5 4.6 31 46-76 3-33 (219)
362 3exa_A TRNA delta(2)-isopenten 97.3 0.0002 6.8E-09 61.3 4.4 34 46-79 3-36 (322)
363 4eaq_A DTMP kinase, thymidylat 97.3 0.00017 5.8E-09 59.1 3.8 28 44-71 24-51 (229)
364 1xx6_A Thymidine kinase; NESG, 97.3 0.00052 1.8E-08 54.6 6.5 25 45-69 7-31 (191)
365 2f6r_A COA synthase, bifunctio 97.3 0.00019 6.7E-09 60.6 4.2 34 46-82 75-108 (281)
366 3llm_A ATP-dependent RNA helic 97.3 0.0034 1.1E-07 51.3 11.6 23 45-67 75-97 (235)
367 2f1r_A Molybdopterin-guanine d 97.3 0.00013 4.6E-09 57.0 2.9 36 47-82 3-43 (171)
368 1j8m_F SRP54, signal recogniti 97.2 0.0005 1.7E-08 58.6 6.5 68 46-113 98-188 (297)
369 2qmh_A HPR kinase/phosphorylas 97.2 0.0002 6.7E-09 57.2 3.6 31 45-76 33-63 (205)
370 1ltq_A Polynucleotide kinase; 97.2 0.00019 6.5E-09 61.0 3.7 34 47-82 3-37 (301)
371 3d3q_A TRNA delta(2)-isopenten 97.2 0.0002 6.7E-09 62.1 3.8 33 47-79 8-40 (340)
372 2axn_A 6-phosphofructo-2-kinas 97.2 0.0027 9.3E-08 58.3 11.6 39 45-83 34-75 (520)
373 2vp4_A Deoxynucleoside kinase; 97.2 0.00013 4.4E-09 59.7 2.4 28 42-69 16-43 (230)
374 1odf_A YGR205W, hypothetical 3 97.2 0.00027 9.1E-09 60.1 4.4 28 44-71 29-56 (290)
375 1f2t_B RAD50 ABC-ATPase; DNA d 97.2 0.001 3.5E-08 50.6 7.2 49 99-162 75-123 (148)
376 1pui_A ENGB, probable GTP-bind 97.2 8.6E-05 2.9E-09 59.3 1.0 31 39-69 19-49 (210)
377 2e87_A Hypothetical protein PH 97.1 0.0025 8.7E-08 55.5 9.8 24 45-68 166-189 (357)
378 1gtv_A TMK, thymidylate kinase 97.1 0.00016 5.6E-09 58.0 1.8 24 48-71 2-25 (214)
379 2ffh_A Protein (FFH); SRP54, s 97.1 0.01 3.5E-07 53.0 13.4 25 45-69 97-121 (425)
380 1x6v_B Bifunctional 3'-phospho 97.0 0.00048 1.6E-08 64.5 4.9 38 45-82 51-91 (630)
381 3eph_A TRNA isopentenyltransfe 97.0 0.00037 1.2E-08 61.7 3.7 33 46-78 2-34 (409)
382 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00036 1.2E-08 53.1 3.2 23 46-68 23-45 (149)
383 2qtf_A Protein HFLX, GTP-bindi 97.0 0.0022 7.5E-08 56.2 8.3 22 48-69 181-202 (364)
384 1a7j_A Phosphoribulokinase; tr 97.0 0.00019 6.3E-09 61.1 1.2 26 46-71 5-30 (290)
385 1c9k_A COBU, adenosylcobinamid 97.0 0.00052 1.8E-08 54.0 3.6 32 49-81 2-33 (180)
386 3gmt_A Adenylate kinase; ssgci 96.9 0.00054 1.8E-08 56.0 3.8 36 47-84 9-44 (230)
387 4b3f_X DNA-binding protein smu 96.9 0.0012 4.1E-08 62.3 6.7 38 15-67 189-226 (646)
388 2j37_W Signal recognition part 96.9 0.0012 4E-08 60.4 6.3 36 44-79 99-137 (504)
389 2rcn_A Probable GTPase ENGC; Y 96.9 0.00042 1.4E-08 60.6 3.2 27 45-71 214-240 (358)
390 1t6n_A Probable ATP-dependent 96.9 0.012 4.1E-07 47.1 11.8 58 8-67 13-72 (220)
391 1oix_A RAS-related protein RAB 96.9 0.00043 1.5E-08 54.6 2.9 23 47-69 30-52 (191)
392 1g41_A Heat shock protein HSLU 96.9 0.016 5.3E-07 52.0 13.2 154 94-255 241-434 (444)
393 2f9l_A RAB11B, member RAS onco 96.9 0.00048 1.6E-08 54.6 3.1 23 47-69 6-28 (199)
394 1np6_A Molybdopterin-guanine d 96.9 0.00062 2.1E-08 53.3 3.7 24 46-69 6-29 (174)
395 2v3c_C SRP54, signal recogniti 96.9 0.0015 5.2E-08 58.6 6.6 35 45-79 98-135 (432)
396 3fdi_A Uncharacterized protein 96.9 0.00073 2.5E-08 54.1 4.1 30 47-76 7-36 (201)
397 1t9h_A YLOQ, probable GTPase E 96.9 0.00017 5.8E-09 61.7 0.4 28 43-70 170-197 (307)
398 2p67_A LAO/AO transport system 96.9 0.002 6.7E-08 56.0 7.1 29 41-69 51-79 (341)
399 1qhl_A Protein (cell division 96.9 0.00016 5.6E-09 59.1 0.2 36 47-82 28-65 (227)
400 3l0o_A Transcription terminati 96.9 0.0042 1.5E-07 54.6 8.8 27 43-69 172-198 (427)
401 3tqf_A HPR(Ser) kinase; transf 96.8 0.00063 2.1E-08 53.0 3.2 25 45-69 15-39 (181)
402 2gxq_A Heat resistant RNA depe 96.8 0.0041 1.4E-07 49.3 8.1 52 10-63 2-55 (207)
403 1u0l_A Probable GTPase ENGC; p 96.8 0.00047 1.6E-08 58.9 2.6 27 44-70 167-193 (301)
404 2pl3_A Probable ATP-dependent 96.8 0.0041 1.4E-07 50.6 8.1 52 9-62 25-78 (236)
405 2o5v_A DNA replication and rep 96.8 0.00047 1.6E-08 60.3 2.4 26 42-68 23-48 (359)
406 2yv5_A YJEQ protein; hydrolase 96.8 0.00069 2.4E-08 57.8 3.5 26 44-70 163-188 (302)
407 2ged_A SR-beta, signal recogni 96.8 0.0017 5.8E-08 50.8 5.3 26 44-69 46-71 (193)
408 2j9r_A Thymidine kinase; TK1, 96.7 0.0025 8.5E-08 51.4 6.1 33 45-77 27-62 (214)
409 2xxa_A Signal recognition part 96.7 0.0028 9.6E-08 56.8 7.0 69 45-113 99-191 (433)
410 1m8p_A Sulfate adenylyltransfe 96.7 0.001 3.5E-08 61.8 4.2 38 45-82 395-436 (573)
411 2ocp_A DGK, deoxyguanosine kin 96.7 0.0012 4E-08 54.3 4.1 26 46-71 2-27 (241)
412 3p32_A Probable GTPase RV1496/ 96.7 0.004 1.4E-07 54.2 7.8 25 45-69 78-102 (355)
413 1w1w_A Structural maintenance 96.7 0.00085 2.9E-08 60.1 3.5 28 41-68 21-48 (430)
414 1fzq_A ADP-ribosylation factor 96.7 0.0039 1.3E-07 48.5 6.8 25 45-69 15-39 (181)
415 1xjc_A MOBB protein homolog; s 96.7 0.001 3.6E-08 51.7 3.4 23 47-69 5-27 (169)
416 3qks_A DNA double-strand break 96.7 0.00094 3.2E-08 53.5 3.2 24 46-69 23-46 (203)
417 1p5z_B DCK, deoxycytidine kina 96.7 0.0006 2.1E-08 56.8 2.0 28 44-71 22-49 (263)
418 2gj8_A MNME, tRNA modification 96.6 0.00094 3.2E-08 51.7 2.9 25 45-69 3-27 (172)
419 1bif_A 6-phosphofructo-2-kinas 96.6 0.017 5.7E-07 52.3 11.5 36 45-80 38-76 (469)
420 2wji_A Ferrous iron transport 96.6 0.00094 3.2E-08 51.2 2.7 22 47-68 4-25 (165)
421 3hdt_A Putative kinase; struct 96.6 0.0016 5.3E-08 53.1 4.0 31 46-76 14-44 (223)
422 4i1u_A Dephospho-COA kinase; s 96.6 0.0026 8.9E-08 51.2 5.2 36 47-85 10-45 (210)
423 1ni3_A YCHF GTPase, YCHF GTP-b 96.6 0.0019 6.6E-08 57.1 4.7 26 43-68 17-42 (392)
424 2www_A Methylmalonic aciduria 96.5 0.0014 4.7E-08 57.1 3.5 25 45-69 73-97 (349)
425 3ihw_A Centg3; RAS, centaurin, 96.5 0.0037 1.3E-07 48.8 5.8 22 47-68 21-42 (184)
426 3b6e_A Interferon-induced heli 96.5 0.0092 3.2E-07 47.4 8.2 23 46-68 48-70 (216)
427 3tmk_A Thymidylate kinase; pho 96.5 0.0024 8.3E-08 51.7 4.7 28 45-72 4-31 (216)
428 3q72_A GTP-binding protein RAD 96.5 0.0019 6.6E-08 49.0 3.9 21 48-68 4-24 (166)
429 4edh_A DTMP kinase, thymidylat 96.5 0.0015 5.2E-08 52.8 3.4 26 45-70 5-30 (213)
430 2zej_A Dardarin, leucine-rich 96.5 0.00097 3.3E-08 52.1 2.2 21 48-68 4-24 (184)
431 3vkw_A Replicase large subunit 96.5 0.0025 8.7E-08 57.0 5.0 26 44-69 159-184 (446)
432 2f7s_A C25KG, RAS-related prot 96.5 0.013 4.3E-07 46.7 8.8 22 47-68 26-47 (217)
433 3iuy_A Probable ATP-dependent 96.5 0.0089 3E-07 48.2 8.0 19 45-63 56-74 (228)
434 2wjg_A FEOB, ferrous iron tran 96.4 0.0015 5E-08 50.9 2.9 22 47-68 8-29 (188)
435 1vec_A ATP-dependent RNA helic 96.4 0.01 3.6E-07 46.9 8.0 54 9-64 3-58 (206)
436 1q0u_A Bstdead; DEAD protein, 96.4 0.0071 2.4E-07 48.5 7.0 54 8-63 3-58 (219)
437 2qnr_A Septin-2, protein NEDD5 96.4 0.0011 3.8E-08 56.5 2.1 22 48-69 20-41 (301)
438 3v9p_A DTMP kinase, thymidylat 96.4 0.0015 5E-08 53.4 2.7 27 44-70 23-49 (227)
439 3dz8_A RAS-related protein RAB 96.4 0.0091 3.1E-07 46.6 7.3 23 47-69 24-46 (191)
440 2dyk_A GTP-binding protein; GT 96.4 0.0019 6.5E-08 48.7 3.1 22 48-69 3-24 (161)
441 3lv8_A DTMP kinase, thymidylat 96.4 0.002 6.7E-08 53.0 3.3 26 45-70 26-51 (236)
442 3iev_A GTP-binding protein ERA 96.4 0.0078 2.7E-07 51.3 7.2 24 45-68 9-32 (308)
443 1nrj_B SR-beta, signal recogni 96.4 0.0024 8.4E-08 51.0 3.8 25 45-69 11-35 (218)
444 1z2a_A RAS-related protein RAB 96.4 0.002 6.8E-08 48.9 3.1 22 47-68 6-27 (168)
445 4dcu_A GTP-binding protein ENG 96.4 0.012 4E-07 53.1 8.7 22 47-68 24-45 (456)
446 2lkc_A Translation initiation 96.3 0.0026 9E-08 48.8 3.6 25 44-68 6-30 (178)
447 1g8f_A Sulfate adenylyltransfe 96.3 0.0025 8.6E-08 58.2 4.0 28 45-72 394-421 (511)
448 3ld9_A DTMP kinase, thymidylat 96.3 0.0026 8.8E-08 51.8 3.6 28 44-71 19-46 (223)
449 2qag_C Septin-7; cell cycle, c 96.3 0.0015 5.2E-08 58.3 2.4 21 49-69 34-54 (418)
450 1kao_A RAP2A; GTP-binding prot 96.3 0.0023 7.9E-08 48.4 3.1 22 47-68 4-25 (167)
451 2p5s_A RAS and EF-hand domain 96.3 0.0024 8.3E-08 50.4 3.3 27 42-68 24-50 (199)
452 2ce2_X GTPase HRAS; signaling 96.3 0.0022 7.5E-08 48.4 2.9 22 48-69 5-26 (166)
453 2wsm_A Hydrogenase expression/ 96.3 0.0035 1.2E-07 50.3 4.2 25 46-70 30-54 (221)
454 1u8z_A RAS-related protein RAL 96.2 0.0025 8.6E-08 48.2 3.1 22 47-68 5-26 (168)
455 4tmk_A Protein (thymidylate ki 96.2 0.0026 9E-08 51.4 3.3 25 46-70 3-27 (213)
456 1ko7_A HPR kinase/phosphatase; 96.2 0.0037 1.3E-07 53.5 4.3 25 45-69 143-167 (314)
457 1ek0_A Protein (GTP-binding pr 96.2 0.0026 8.9E-08 48.3 3.1 21 48-68 5-25 (170)
458 1udx_A The GTP-binding protein 96.2 0.0011 3.6E-08 59.3 0.9 29 41-69 152-180 (416)
459 1z0j_A RAB-22, RAS-related pro 96.2 0.0026 8.9E-08 48.3 3.1 23 47-69 7-29 (170)
460 2nzj_A GTP-binding protein REM 96.2 0.0022 7.6E-08 49.0 2.7 22 47-68 5-26 (175)
461 1zd9_A ADP-ribosylation factor 96.2 0.011 3.8E-07 46.0 6.8 23 46-68 22-44 (188)
462 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0027 9.1E-08 48.8 3.1 22 47-68 8-29 (177)
463 1svi_A GTP-binding protein YSX 96.2 0.0033 1.1E-07 49.2 3.7 25 45-69 22-46 (195)
464 1upt_A ARL1, ADP-ribosylation 96.2 0.0034 1.2E-07 47.8 3.7 24 45-68 6-29 (171)
465 2erx_A GTP-binding protein DI- 96.2 0.0025 8.6E-08 48.5 2.9 22 47-68 4-25 (172)
466 1z08_A RAS-related protein RAB 96.2 0.0027 9.3E-08 48.3 3.1 23 47-69 7-29 (170)
467 1g16_A RAS-related protein SEC 96.2 0.0026 8.9E-08 48.3 2.9 22 47-68 4-25 (170)
468 1ky3_A GTP-binding protein YPT 96.2 0.0029 9.9E-08 48.7 3.1 23 46-68 8-30 (182)
469 1hv8_A Putative ATP-dependent 96.2 0.017 6E-07 49.5 8.4 59 8-67 5-65 (367)
470 3q85_A GTP-binding protein REM 96.1 0.0026 8.8E-08 48.4 2.7 21 48-68 4-24 (169)
471 1moz_A ARL1, ADP-ribosylation 96.1 0.0028 9.7E-08 48.9 3.0 25 44-68 16-40 (183)
472 1c1y_A RAS-related protein RAP 96.1 0.0031 1.1E-07 47.8 3.1 22 47-68 4-25 (167)
473 1r2q_A RAS-related protein RAB 96.1 0.0033 1.1E-07 47.7 3.1 22 47-68 7-28 (170)
474 2atv_A RERG, RAS-like estrogen 96.1 0.0037 1.3E-07 49.1 3.4 24 45-68 27-50 (196)
475 3bc1_A RAS-related protein RAB 96.1 0.0033 1.1E-07 48.8 3.1 22 47-68 12-33 (195)
476 3fe2_A Probable ATP-dependent 96.1 0.011 3.7E-07 48.3 6.3 54 8-63 28-83 (242)
477 3lxx_A GTPase IMAP family memb 96.1 0.003 1E-07 51.6 2.9 23 46-68 29-51 (239)
478 3k53_A Ferrous iron transport 96.1 0.0031 1.1E-07 52.7 3.0 23 47-69 4-26 (271)
479 1r8s_A ADP-ribosylation factor 96.1 0.0036 1.2E-07 47.4 3.1 21 48-68 2-22 (164)
480 1ega_A Protein (GTP-binding pr 96.0 0.0027 9.4E-08 54.0 2.7 24 46-69 8-31 (301)
481 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0035 1.2E-07 48.6 3.1 22 47-68 5-26 (189)
482 2hxs_A RAB-26, RAS-related pro 96.0 0.0035 1.2E-07 48.1 3.0 22 47-68 7-28 (178)
483 1f6b_A SAR1; gtpases, N-termin 96.0 0.0044 1.5E-07 49.0 3.6 23 46-68 25-47 (198)
484 2fn4_A P23, RAS-related protei 96.0 0.0033 1.1E-07 48.3 2.9 23 47-69 10-32 (181)
485 2y8e_A RAB-protein 6, GH09086P 96.0 0.0034 1.2E-07 48.1 2.9 22 47-68 15-36 (179)
486 2oil_A CATX-8, RAS-related pro 96.0 0.0037 1.3E-07 48.9 3.1 22 47-68 26-47 (193)
487 1z0f_A RAB14, member RAS oncog 96.0 0.0038 1.3E-07 47.8 3.1 23 46-68 15-37 (179)
488 2hf9_A Probable hydrogenase ni 96.0 0.0078 2.7E-07 48.4 5.1 26 45-70 37-62 (226)
489 3clv_A RAB5 protein, putative; 96.0 0.0043 1.5E-07 48.5 3.5 24 46-69 7-30 (208)
490 1m2o_B GTP-binding protein SAR 96.0 0.0038 1.3E-07 49.0 3.1 23 46-68 23-45 (190)
491 3con_A GTPase NRAS; structural 96.0 0.0038 1.3E-07 48.6 3.1 23 47-69 22-44 (190)
492 2b6h_A ADP-ribosylation factor 96.0 0.0044 1.5E-07 48.7 3.5 31 38-68 21-51 (192)
493 4ag6_A VIRB4 ATPase, type IV s 96.0 0.0067 2.3E-07 53.5 5.0 24 45-68 34-57 (392)
494 2a9k_A RAS-related protein RAL 96.0 0.004 1.4E-07 48.1 3.1 22 47-68 19-40 (187)
495 2orv_A Thymidine kinase; TP4A 96.0 0.03 1E-06 45.6 8.3 24 45-68 18-41 (234)
496 2efe_B Small GTP-binding prote 96.0 0.004 1.4E-07 47.9 3.1 22 47-68 13-34 (181)
497 2gk6_A Regulator of nonsense t 95.9 0.0068 2.3E-07 56.9 5.1 22 47-68 196-217 (624)
498 3bwd_D RAC-like GTP-binding pr 95.9 0.0052 1.8E-07 47.3 3.6 25 45-69 7-31 (182)
499 2cxx_A Probable GTP-binding pr 95.9 0.0032 1.1E-07 48.9 2.4 21 48-68 3-23 (190)
500 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0039 1.3E-07 48.5 2.9 24 46-69 7-30 (184)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-61 Score=425.38 Aligned_cols=268 Identities=82% Similarity=1.258 Sum_probs=247.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
.++++|+++|+||+|+++++++|.+.+..|+.+|+.|..+|+.+|+++|||||||||||++|+++|++.+++++.+++++
T Consensus 138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
+.++|+|++++.++.+|..|...+||||||||+|.+++.|... .++.+....+.+.++|..++++....++.||+|||+
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~-~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG-SGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR 296 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCS-SSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC
T ss_pred hhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCC-CCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC
Confidence 9999999999999999999999999999999999999988543 233456677889999999999888889999999999
Q ss_pred CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 024249 162 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH 241 (270)
Q Consensus 162 ~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~ 241 (270)
++.+|++++|+||||..|+++.|+.++|.+||+.++++..+..++|+..+|+.|+||||+||.++|++|++.|+++++..
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~ 376 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIH 376 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSB
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhhccchhhhhhhC
Q 024249 242 VTQEDFEMAVAKVMKKETEKNMSLRKLWK 270 (270)
Q Consensus 242 i~~~d~~~a~~~~~~~~~~~~~~~~~~~~ 270 (270)
|+++||+.|+.++++....+.++..++||
T Consensus 377 vt~~Df~~Al~~v~~~~~~~~~s~~k~~k 405 (405)
T 4b4t_J 377 VTQEDFELAVGKVMNKNQETAISVAKLFK 405 (405)
T ss_dssp CCHHHHHHHHHHHHHHHTCC---------
T ss_pred cCHHHHHHHHHHHhCccccccchhHhhhC
Confidence 99999999999999999999999999997
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-58 Score=407.08 Aligned_cols=263 Identities=56% Similarity=0.980 Sum_probs=248.3
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|.|++.|+++|+||+|+++++++|.+.+..|+.+|+.|..+|+.+|++||||||||||||++|+++|++.+.+++.++++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.++|+|+.++.++.+|..|...+||||||||+|.+++.|.... ...+....+.+..+|+.++++....++.||+|||
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN 329 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN 329 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES
T ss_pred HhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCC-CCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC
Confidence 999999999999999999999999999999999999999986532 2345567788899999999887788999999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+++.+|++++|+||||..|+++.|+.++|.+||+.+++...+..++|+..+|..|+||||+||.++|++|++.|++++..
T Consensus 330 rpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~ 409 (437)
T 4b4t_I 330 KIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM 409 (437)
T ss_dssp CSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred ChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhhccchh
Q 024249 241 HVTQEDFEMAVAKVMKKETEKNMS 264 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~~~~~~~~~ 264 (270)
.|+.+||+.|+.++.++....+++
T Consensus 410 ~It~eDf~~Al~rv~~~~~~e~le 433 (437)
T 4b4t_I 410 QVTAEDFKQAKERVMKNKVEENLE 433 (437)
T ss_dssp CBCHHHHHHHHHHHHHHHCCCSSS
T ss_pred ccCHHHHHHHHHHHhCCCChhhHH
Confidence 999999999999999988777764
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-57 Score=402.59 Aligned_cols=257 Identities=60% Similarity=0.964 Sum_probs=243.2
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|.|++.|+++|+||+|++++|++|++.+..|+.+|+.|..+|+.+|+++|||||||||||++|+++|++++.+++.++++
T Consensus 198 m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s 277 (467)
T 4b4t_H 198 MTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS 277 (467)
T ss_dssp CEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.++++|++++.++.+|..|...+||||||||+|.++..|.... .+.+....+.+..+|..++++....++.||+|||
T Consensus 278 ~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN 356 (467)
T 4b4t_H 278 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN 356 (467)
T ss_dssp GGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS
T ss_pred HhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcC-CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC
Confidence 999999999999999999999999999999999999999886432 3344567778899999999888888999999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+++.+|++++|+|||++.|+++.|+.++|.+||+.+++......++|+..||+.|+||||+||+++|++|++.|++++..
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~ 436 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhh
Q 024249 241 HVTQEDFEMAVAKVMKKE 258 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~~~ 258 (270)
.++++||+.|+.+++...
T Consensus 437 ~it~~Df~~Al~kV~~g~ 454 (467)
T 4b4t_H 437 VATEKDFLKAVDKVISGY 454 (467)
T ss_dssp SBCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhcCc
Confidence 999999999999997643
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-56 Score=398.74 Aligned_cols=256 Identities=51% Similarity=0.879 Sum_probs=241.7
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
+.+++.|+++|+||+|+++++++|.+.+..|+.+|+.|..+|+.+|+|+|||||||||||++|+++|++++++++.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.++|.|..+..++.+|..|...+||||||||+|.+++.|.... ...+......+..+|..++++....++.||+|||
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC-CCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 999999999999999999999999999999999999999886432 3345667788899999999988888999999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+++.+|++++|+||||..|+++.|+.++|.+||+.+++......++|+..+|..|+||||+||.++|++|++.|++++..
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~ 408 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD 408 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 024249 241 HVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~~ 257 (270)
.|+.+||+.|+.++.+.
T Consensus 409 ~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 409 HINPDDLMKAVRKVAEV 425 (437)
T ss_dssp SBCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998764
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-56 Score=401.87 Aligned_cols=262 Identities=54% Similarity=0.912 Sum_probs=244.3
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|.+++.|+++|+||+|+++++++|.+.+..|+.+|+.|..+|+++|+++|||||||||||++|+++|++.+++++.++++
T Consensus 170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.++|+|..++.++.+|..|...+||||||||+|.+++.|.... .+.+....+.+..+|+.++++....++.||+|||
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC-CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 999999999999999999999999999999999999999885432 2334566778899999999988888999999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
+++.+|++++|+|||+..|+++.|+.++|.+||+.+++......++|+..+|..|+||||+||+++|++|++.|++++..
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~ 408 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS 408 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhhccchh
Q 024249 241 HVTQEDFEMAVAKVMKKETEKNMS 264 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~~~~~~~~~ 264 (270)
.|+.+||+.|+.++.++.+ ++++
T Consensus 409 ~i~~~Df~~Al~~v~~~~~-~~i~ 431 (434)
T 4b4t_M 409 SVKHEDFVEGISEVQARKS-KSVS 431 (434)
T ss_dssp SBCHHHHHHHHHSCSSSCC-CCCC
T ss_pred CcCHHHHHHHHHHHhCCCC-cCcc
Confidence 9999999999999877544 3343
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-55 Score=395.73 Aligned_cols=257 Identities=51% Similarity=0.841 Sum_probs=241.5
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|.+++.|+++|+||||++++|++|.+.+..|+.+|+.|..+|+.+|+|+|||||||||||++|+++|++++.+++.++++
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++.++++|..+..++.+|..|...+||||||||+|.+++.|.... ...+....+.+.++|..++++....++.||+|||
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred hhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC-CCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 999999999999999999999999999999999999999886432 3345567788899999999888888999999999
Q ss_pred CCCCchhhhcCCCCcceEEEeC-CCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 024249 161 RIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR 239 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~-~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~ 239 (270)
+++.+|++++|+|||+..|++| .|+.++|..||+.++++.....++|+..+|..|+||||+||.++|++|++.|++++.
T Consensus 320 ~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 320 RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999997 899999999999999999888899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhh
Q 024249 240 IHVTQEDFEMAVAKVMKKE 258 (270)
Q Consensus 240 ~~i~~~d~~~a~~~~~~~~ 258 (270)
..++++||+.|+...++..
T Consensus 400 ~~i~~~d~~~A~~~~~~~~ 418 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVKTD 418 (428)
T ss_dssp SSBCHHHHHHHHHHHSCSC
T ss_pred CCCCHHHHHHHHHHhhCcc
Confidence 9999999999999876643
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.4e-50 Score=383.85 Aligned_cols=265 Identities=38% Similarity=0.715 Sum_probs=197.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
++|+++|++|+|+++.+++|.+.+..|+.+|+.|..+|+.++.++|||||||||||++++++|.+++.+++.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
+|+|+.++.++.+|..|+..+||||||||+|.+++.|.... +.......+.+.++|.+|+++....+++||++||+++.
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC-CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999885321 12223455678889999998888889999999999999
Q ss_pred chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Q 024249 165 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER------ 238 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~------ 238 (270)
+|++++|+|||++.|+++.|+.++|.+||+.++++.....++|+..||+.|+||||+||.++|++|++.|+++.
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~ 708 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 708 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC----
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999888889999999999999999999999999999998762
Q ss_pred -------------------CCCCCHHHHHHHHHHHhhhhhccchhhhhhhC
Q 024249 239 -------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 270 (270)
Q Consensus 239 -------------------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~ 270 (270)
...|+.+||+.|++.+.|+.++..+..++.|.
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~ 759 (806)
T 3cf2_A 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 759 (806)
T ss_dssp -------------------CCC----CCTTTC---------------CCCC
T ss_pred hhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 13689999999999999999999999998884
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.8e-47 Score=363.73 Aligned_cols=249 Identities=41% Similarity=0.748 Sum_probs=227.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
.+|+++|+||+|+++++++|++.+..|+.+|+.|..+|+.+|++||||||||||||+|++++|++++.+++.+++.++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
++.++.++.++.+|..|..++|+||||||+|.|++.+.+. ......+.+.+++..++++...+++.||++||+++.
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC----CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999987532 122334556667777777666778999999999999
Q ss_pred chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Q 024249 165 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER------ 238 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~------ 238 (270)
+|++++|+|||+++|+++.|+.++|.+||+.++++.....++|+..+|..|+||+|+||..+|++|++.|+++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999888899999999999999999999999999999998762
Q ss_pred -----------CCCCCHHHHHHHHHHHhhh
Q 024249 239 -----------RIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 239 -----------~~~i~~~d~~~a~~~~~~~ 257 (270)
...++.+||+.|+..+.++
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps 462 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCCc
Confidence 2457889999999888664
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=308.74 Aligned_cols=254 Identities=39% Similarity=0.682 Sum_probs=209.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
.+|+++|+||+|++++++.|.+.+..|+.+++.++++++..+.+++|+||||||||||++++|+..+.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
.+.+...+.+..+|+.+....|+++++||+|.++..+..... ....+.+.+++..+++...+..+.++++||+++.
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~----~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~ 158 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET----GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 158 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc----hHHHHHHHHHHHhhhcccccCCEEEEeecCChhh
Confidence 788888888999999998999999999999998866532111 1122345667777877767778999999999999
Q ss_pred chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhcc---CCCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhc-
Q 024249 165 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR---MNLMRGIDLKKIAEKM--NGASGAELKAVCTEAGMFALRER- 238 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~--~g~~~~dl~~l~~~a~~~a~~~~- 238 (270)
+|++++|+|||++.|+++.|+.++|.+||+.+++. .....++++..+|..+ +||||+||.++|++|+..|+++.
T Consensus 159 LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998754 3445789999999875 59999999999999999998752
Q ss_pred ----------CCCCCHHHHHHHHHHHhhhhhccc
Q 024249 239 ----------RIHVTQEDFEMAVAKVMKKETEKN 262 (270)
Q Consensus 239 ----------~~~i~~~d~~~a~~~~~~~~~~~~ 262 (270)
...++.+||+.|+..+.++.+..+
T Consensus 239 ~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~~~ 272 (274)
T 2x8a_A 239 ARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 272 (274)
T ss_dssp -----------CCBCHHHHHHHHTTCCCCC----
T ss_pred hhccccccccCCeecHHHHHHHHHHhcCCCChhh
Confidence 357999999999999988766554
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=8.3e-44 Score=308.70 Aligned_cols=265 Identities=38% Similarity=0.700 Sum_probs=232.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
+..+|+++|++|+|++++++.|.+.+..++.+|+.|.++++.++.+++|+||||||||++++++|++.+.+++.+++.++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC--CCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 83 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG--SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~--~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
...+.+..+..++.+|..+....|++|||||+|.+++.+.... ....... .+..++..+++.....++.||++||
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~---~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR---VINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCH---HHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHH---HHHHHHHHhhcccCCCCEEEEEecC
Confidence 9999999889999999999999999999999999987653211 1112222 3344555555555566899999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER-- 238 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~-- 238 (270)
.++.++++++|+|||+..++++.|+.++|.+|++.+++......++++..++..++||+|+||.++|++|...|+++.
T Consensus 163 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~ 242 (301)
T 3cf0_A 163 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 242 (301)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877778999999999999999999999999999887542
Q ss_pred -----------------------CCCCCHHHHHHHHHHHhhhhhccchhhhhhhC
Q 024249 239 -----------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 270 (270)
Q Consensus 239 -----------------------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~ 270 (270)
...++.+||+.|++.+.++.+...+.-++.|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~ 297 (301)
T 3cf0_A 243 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 297 (301)
T ss_dssp HHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred hhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 13689999999999999998888888877773
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.3e-42 Score=299.40 Aligned_cols=260 Identities=35% Similarity=0.581 Sum_probs=229.1
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCeEEEEcchh
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSE 81 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~i~~~~ 81 (270)
+.+.|+++|+||+|++++++.|.+.+..|+.+++.|.. +..+++++||+||||||||++++++|++. +.+++.+++.+
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 35688999999999999999999999999999999874 35678999999999999999999999998 88999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc-CCCCeEEEEEeC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-ASNKIKVLMATN 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~vi~tt~ 160 (270)
+...+.+..++.++.+|..+...+|+||||||+|.+++.+.. .......+.+.+++..+++.. ...++.||++||
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn 157 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 157 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSS----CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEES
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccc----ccchHHHHHHHHHHHHHhcccccCCCEEEEEecC
Confidence 988889999999999999999999999999999999887643 223345566677788777654 346899999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER- 238 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~- 238 (270)
.++.++++++| ||+..++++.|+.++|.+|++.+++.... ..+.++..++..++||+|+||..+|++|++.|+++.
T Consensus 158 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 158 IPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp CTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred CcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999877654 356788999999999999999999999999988752
Q ss_pred ------------------------------------------------CCCCCHHHHHHHHHHHhhhhhccchhhhhhh
Q 024249 239 ------------------------------------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 269 (270)
Q Consensus 239 ------------------------------------------------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~ 269 (270)
...|+.+||+.|++.+.|+.+...+..++-|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~ 314 (322)
T 1xwi_A 236 SATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKF 314 (322)
T ss_dssp HCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 1369999999999999999999998888888
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.4e-41 Score=288.97 Aligned_cols=256 Identities=59% Similarity=1.000 Sum_probs=234.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
++...|+++|++|+|+++++++|.+++..++.+++.+..+++.++.+++|+||||||||++++++|+..+.+++.+++.+
T Consensus 7 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~ 86 (285)
T 3h4m_A 7 EVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86 (285)
T ss_dssp EEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
+...+.+.....++.+|..+....|+||||||+|.+++.+.+. ....+...+..+..+++.+++.....++.||+|||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~ 165 (285)
T 3h4m_A 87 LVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA-LTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR 165 (285)
T ss_dssp GCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSS-CCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC
T ss_pred HHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccc-cCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 9888888888899999999999999999999999998776432 223355677888889988877666678999999999
Q ss_pred CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 024249 162 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH 241 (270)
Q Consensus 162 ~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~ 241 (270)
++.+++++.+++||+..+.++.|+.++|.+|++.+++......+.++..++..+.|++++|+..+|++|...|+.++...
T Consensus 166 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~ 245 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDY 245 (285)
T ss_dssp GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999888877788899999999999999999999999999999998889
Q ss_pred CCHHHHHHHHHHHhhhh
Q 024249 242 VTQEDFEMAVAKVMKKE 258 (270)
Q Consensus 242 i~~~d~~~a~~~~~~~~ 258 (270)
|+.+||..|+.++.+..
T Consensus 246 I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 246 VTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp BCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999998643
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.8e-40 Score=302.18 Aligned_cols=250 Identities=45% Similarity=0.763 Sum_probs=221.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~ 85 (270)
.+.++|+||+|+++.++++.+.+.. +.+++.|..++...|.+++|+||||||||++++++|++.+.+++.+++.++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999998876 778999999999999999999999999999999999999999999999999888
Q ss_pred hhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 86 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+.+.....++.+|..|....|+||||||+|.+.+.+... ..+.+....+.+..++..++++....+++||++||+++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~-~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG-LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc-cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 888888899999999999999999999999998876431 2234455566677788777766556789999999999999
Q ss_pred hhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 024249 166 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 245 (270)
Q Consensus 166 ~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 245 (270)
+++++|+|||+..+.++.|+.++|.+|++.+++......++++..++..++||+|+||.++|++|+..|.+++...|+.+
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~ 247 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMK 247 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHH
Confidence 99999999999999999999999999999999888877889999999999999999999999999999988888899999
Q ss_pred HHHHHHHHHhhh
Q 024249 246 DFEMAVAKVMKK 257 (270)
Q Consensus 246 d~~~a~~~~~~~ 257 (270)
||+.|+.+++..
T Consensus 248 dl~~al~~v~~~ 259 (476)
T 2ce7_A 248 DFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhcC
Confidence 999999998753
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3.8e-40 Score=279.29 Aligned_cols=254 Identities=43% Similarity=0.699 Sum_probs=220.6
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
||+++.++.+|++|+|+++.++++.+.+.. +.+++.+..++...+.+++|+|||||||||+++++++..+.+++.+++.
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~ 79 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHH
Confidence 578899999999999999999999998765 7788889999999999999999999999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
++...+.+.....++.+|..+....|+++++||+|.+...+.... ..........+..++..+++.....++.||++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn 158 (257)
T 1lv7_A 80 DFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 158 (257)
T ss_dssp SSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS-CCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEES
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc-CCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeC
Confidence 988888888888899999999999999999999999987654321 1223344456677777777665667899999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 240 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~ 240 (270)
.++.+++++.|++||+..+.++.|+.++|.+|++.+++......+.++..++..++||+++||..+|++|...|..++..
T Consensus 159 ~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~ 238 (257)
T 1lv7_A 159 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR 238 (257)
T ss_dssp CTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999988887778888999999999999999999999999999988888
Q ss_pred CCCHHHHHHHHHHHhh
Q 024249 241 HVTQEDFEMAVAKVMK 256 (270)
Q Consensus 241 ~i~~~d~~~a~~~~~~ 256 (270)
.|+.+||+.|+.++..
T Consensus 239 ~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 239 VVSMVEFEKAKDKIMM 254 (257)
T ss_dssp SBCHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhc
Confidence 9999999999998753
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.2e-41 Score=295.05 Aligned_cols=261 Identities=34% Similarity=0.575 Sum_probs=224.4
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
.+.+.|+++|++|+|++++++.|.+.+..|+.+|+.+.. +..++.++||+||||||||++++++|.+.+.+++.+++.+
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 467899999999999999999999999999999998876 5567889999999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc-CCCCeEEEEEeC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-ASNKIKVLMATN 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~vi~tt~ 160 (270)
+...+.+.....++.+|..+...+|+||||||+|.+++.+.... .... .+...+++..+++.. ...++.||++||
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~-~~~~---~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE-SEAS---RRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCT---HHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc-chHH---HHHHHHHHHHhccccccCCceEEEEecC
Confidence 99999999999999999999999999999999999988764321 1122 233344555555442 446799999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR 239 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~ 239 (270)
.++.+++++.+ ||+..++++.|+.++|.+|++.++..... ..+.++..++..++||+|+||..+|++|...|+++..
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 99999999999999999999999877653 3567789999999999999999999999999987531
Q ss_pred -------------------------------------------CCCCHHHHHHHHHHHhhhhhccchhhhhhh
Q 024249 240 -------------------------------------------IHVTQEDFEMAVAKVMKKETEKNMSLRKLW 269 (270)
Q Consensus 240 -------------------------------------------~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~ 269 (270)
..|+.+||+.|++.+.|+.+...+.-++.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~ 313 (322)
T 3eie_A 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 313 (322)
T ss_dssp HCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 359999999999999999998888887777
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.1e-40 Score=292.40 Aligned_cols=260 Identities=34% Similarity=0.575 Sum_probs=216.8
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
+...|+++|++|+|+++.++.|.+.+..|+.+++.|.. +..++.++||+||||||||++++++|.+++.+++.+++.++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 45678899999999999999999999999999999886 56778899999999999999999999999999999999999
Q ss_pred HHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcC-CCCeEEEEEeCC
Q 024249 83 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMATNR 161 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~vi~tt~~ 161 (270)
...+.+..+..++.+|..+....|+||||||+|.+.+.+... ......+....++..+++... ..++.||++||.
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~ 196 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 196 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC----cchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence 998899999999999999999999999999999998776321 222334444555555554432 457999999999
Q ss_pred CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Q 024249 162 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER-- 238 (270)
Q Consensus 162 ~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~-- 238 (270)
++.++++++| ||+..++++.|+.++|.+|++.++..... ..+.++..|+..++||+|+||..+|++|.+.|+++.
T Consensus 197 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 197 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp GGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999887654 356778999999999999999999999999998752
Q ss_pred -----------------------------------------CCCCCHHHHHHHHHHHhhhhhccchhhhhhh
Q 024249 239 -----------------------------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 269 (270)
Q Consensus 239 -----------------------------------------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~ 269 (270)
...|+.+||+.|+..+.|+.+...+..++-|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~ 346 (355)
T 2qp9_X 275 ATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 346 (355)
T ss_dssp CSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHH
T ss_pred hhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 1359999999999999999999888888887
No 17
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=3.8e-39 Score=273.29 Aligned_cols=256 Identities=38% Similarity=0.653 Sum_probs=197.4
Q ss_pred CCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhh
Q 024249 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 86 (270)
Q Consensus 7 ~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~ 86 (270)
|+++|++|+|+++.++.+.+.+.. +.+++.|..+|+..+.+++|+||||||||+++++++++.+.+++.+++.++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568899999999999999998876 7888999999999999999999999999999999999999999999999988777
Q ss_pred hchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 87 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.+.....++.+|..+....|++|+|||+|.++..+........+......+..++..+++.....++.+|+|||.++.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 77778888999999999999999999999998766432222223344556677777777655566899999999999999
Q ss_pred hhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q 024249 167 QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID--LKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 244 (270)
Q Consensus 167 ~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~ 244 (270)
+++.++|||+..++++.|+.++|.+|++.++.......+.+ ...++..++||+++||..+|++|...|.+++...|+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999987765543333 4789999999999999999999999998888889999
Q ss_pred HHHHHHHHHHhhhhhccch
Q 024249 245 EDFEMAVAKVMKKETEKNM 263 (270)
Q Consensus 245 ~d~~~a~~~~~~~~~~~~~ 263 (270)
+||+.|+.++.+....+.-
T Consensus 240 ~d~~~a~~~~~~~~~~~~~ 258 (262)
T 2qz4_A 240 LNFEYAVERVLAGTAKKSK 258 (262)
T ss_dssp CCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhccChhhhhH
Confidence 9999999999887655543
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.9e-38 Score=289.53 Aligned_cols=249 Identities=41% Similarity=0.746 Sum_probs=220.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~ 85 (270)
.++++|++|+|+++++++|.+.+..++.+++.|..+|..++.++||+||||||||+++++++.+.+.+++.++|..+...
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 86 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+.+.....++.+|..|....|++|||||+|.+++.+... ......+....++..+++.....++.||++||.++.+
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~----~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC----CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc----cchHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 999988999999999999999999999999998876321 1222333444455555444456689999999999999
Q ss_pred hhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC------
Q 024249 166 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR------ 239 (270)
Q Consensus 166 ~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~------ 239 (270)
++++.++|||+..++++.|+.++|.+||+.+++......+.++..++..++||+++||..+|++|+..|+++..
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~ 433 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTT
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999888888888999999999999999999999999999987642
Q ss_pred -----------CCCCHHHHHHHHHHHhhhh
Q 024249 240 -----------IHVTQEDFEMAVAKVMKKE 258 (270)
Q Consensus 240 -----------~~i~~~d~~~a~~~~~~~~ 258 (270)
..++.+||+.|+..+.++.
T Consensus 434 ~~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp CSSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred ccccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 2589999999999987754
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=7.2e-39 Score=291.35 Aligned_cols=261 Identities=34% Similarity=0.569 Sum_probs=219.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCeEEEEcchh
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSE 81 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~i~~~~ 81 (270)
+...|+++|++|+|+++.++.|.+.+..|+.+++.|.. +..++.++||+||||||||++++++|.++ +.+++.+++.+
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 45678999999999999999999999999999998864 34677999999999999999999999998 88999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcC-CCCeEEEEEeC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMATN 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~vi~tt~ 160 (270)
+...+.+..+..++.+|..+....|+||||||+|.+++.+... ......+....++..+++... ..++.||+|||
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC----CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc----cccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 9999999888899999999999999999999999998876432 223345566778888876542 46799999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER- 238 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~- 238 (270)
.++.++++++| ||+..+.++.|+.++|..|++.++..... ..+.++..|+..++||+|+||..+|++|.+.|+++.
T Consensus 280 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 280 IPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred CccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999877654 356789999999999999999999999999888752
Q ss_pred ------------------------------------------------CCCCCHHHHHHHHHHHhhhhhccchhhhhhhC
Q 024249 239 ------------------------------------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 270 (270)
Q Consensus 239 ------------------------------------------------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~ 270 (270)
...|+.+||+.|+..+.|+.+...+...+-|.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~ 437 (444)
T 2zan_A 358 SATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFT 437 (444)
T ss_dssp HCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHT
T ss_pred hhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 12588999999999999999999998888884
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1e-37 Score=263.88 Aligned_cols=247 Identities=44% Similarity=0.753 Sum_probs=212.8
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
+...|.++|++++|+++.++++.+.... +.++..+..+++..+.+++|+||||||||||++++++..+.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3467889999999999999999987765 577888999999999999999999999999999999999999999999998
Q ss_pred HHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 83 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
...+.+.....+..+|+.+....|+++++||+|.+...+... .........+.+..++..+++...+..+.++++||++
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~-~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p 164 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 164 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc-ccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCc
Confidence 877777777788899999888889999999999987655321 1122344556677788888876666678899999999
Q ss_pred CCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 024249 163 DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHV 242 (270)
Q Consensus 163 ~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i 242 (270)
+.+|++++|++||+..++++.|+.++|.+|++.+.+......++++..++..++||+|+||..+|++|...|..++...|
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I 244 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 244 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999998877777888999999999999999999999999999988877889
Q ss_pred CHHHHHHHH
Q 024249 243 TQEDFEMAV 251 (270)
Q Consensus 243 ~~~d~~~a~ 251 (270)
+.+||++|+
T Consensus 245 ~~~dl~~a~ 253 (254)
T 1ixz_A 245 TMKDLEEAA 253 (254)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 999999885
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=3.5e-38 Score=288.58 Aligned_cols=249 Identities=45% Similarity=0.751 Sum_probs=222.5
Q ss_pred CCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhh
Q 024249 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 86 (270)
Q Consensus 7 ~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~ 86 (270)
++++|++|+|+++.++++.+.+.. +.++..+.++++..+.+++|+||||||||+|+++|++..+.+++.+++.++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 789999999999999999998875 6788899999999999999999999999999999999999999999999988777
Q ss_pred hchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 87 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.+.....++.+|+.+....|+++||||+|.+...+... .........+.+..++..+++...+..+.++++||+++.+|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~-~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD 183 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 183 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS-TTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC-cCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcC
Confidence 78777888899998888889999999999998765321 12234455667788888888876667889999999999999
Q ss_pred hhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 024249 167 QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQED 246 (270)
Q Consensus 167 ~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d 246 (270)
++++|+|||+..+.++.|+.++|.+||+.+++...+..++++..+|..++||+|+||.++|++|+..|.+++...|+.+|
T Consensus 184 ~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~d 263 (499)
T 2dhr_A 184 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 263 (499)
T ss_dssp TTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHH
T ss_pred cccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Confidence 99999999999999999999999999999988877778899999999999999999999999999999887778899999
Q ss_pred HHHHHHHHhhh
Q 024249 247 FEMAVAKVMKK 257 (270)
Q Consensus 247 ~~~a~~~~~~~ 257 (270)
|+.|+.++...
T Consensus 264 l~~al~~v~~~ 274 (499)
T 2dhr_A 264 LEEAADRVMML 274 (499)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcc
Confidence 99999998764
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=3.2e-36 Score=258.13 Aligned_cols=246 Identities=44% Similarity=0.753 Sum_probs=212.6
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
...|+++|++++|+++.++++.+.... +.++..+.++++..+.+++|+||||||||||++++++..+.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 445889999999999999999987765 5778889999999899999999999999999999999999999999999988
Q ss_pred HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 84 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
..+.+.....+..+|+.+....|+++++||+|.+...+... ...........+..++..+++...+..+.++++||+++
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~-~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTT
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc-cCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCch
Confidence 77777777778899999988889999999999887654311 11223445667778888888766666788999999999
Q ss_pred CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 024249 164 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 243 (270)
Q Consensus 164 ~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~ 243 (270)
.+|+++.|++||+..++++.|+.++|.+|++.+.+......++++..++..++|++|+||..+|++|...|..++...|+
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~ 269 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 269 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBC
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999988777777889999999999999999999999999999888778899
Q ss_pred HHHHHHHH
Q 024249 244 QEDFEMAV 251 (270)
Q Consensus 244 ~~d~~~a~ 251 (270)
.+||++|+
T Consensus 270 ~~dl~~a~ 277 (278)
T 1iy2_A 270 MKDLEEAA 277 (278)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999885
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=269.95 Aligned_cols=261 Identities=34% Similarity=0.595 Sum_probs=221.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 3 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
+++.++++|++|+|+++.++.|.+.+..++.+++.+..++ .++.++||+||||||||++++++|.+.+.+++.+++.++
T Consensus 75 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l 153 (357)
T 3d8b_A 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153 (357)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence 4567899999999999999999999999999998877654 678899999999999999999999999999999999999
Q ss_pred HHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc--CCCCeEEEEEeC
Q 024249 83 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE--ASNKIKVLMATN 160 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~vi~tt~ 160 (270)
...+.+.....++.+|..+....|+||||||+|.+++.+.. +......+.+.+++..+++.. ...++.||++||
T Consensus 154 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 154 TSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 88888888889999999999999999999999999876532 222334455566666666543 235789999999
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER- 238 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~- 238 (270)
.++.+++++++ ||+..+.++.|+.++|.++++.+++.... ..+.++..++..++||+++||..+|++|...++++.
T Consensus 230 ~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 230 RPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp CGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred ChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 99999999999999999999988766433 244568889999999999999999999999888742
Q ss_pred -----------CCCCCHHHHHHHHHHHhhhhhccchhhhhhhC
Q 024249 239 -----------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 270 (270)
Q Consensus 239 -----------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~ 270 (270)
...|+.+||+.|+..+.++.++.+++..+.|.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~ 350 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWN 350 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHH
T ss_pred hhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999999888883
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=4.8e-37 Score=265.37 Aligned_cols=265 Identities=35% Similarity=0.582 Sum_probs=217.8
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
.+++.|+++|++++|.++.++.+.+.+..++.+++.+..++ .++.+++|+||||||||+++++++++.+.+++.+++.+
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 46778899999999999999999999999999999887665 46789999999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
+...+.+.....++.+|..+....|++|||||+|.++..+.... ..........+...++.........++.||++||+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc-chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 98888888888899999999999999999999999987764321 11222333334444444322112246899999999
Q ss_pred CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Q 024249 162 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER-- 238 (270)
Q Consensus 162 ~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~-- 238 (270)
++.+++++.+ ||+..+.++.|+.++|..|++.++..... ..+.++..++..++||+++||..+|++|+..++++.
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988 99999999999999999999998876543 234567889999999999999999999999998764
Q ss_pred ----------CCCCCHHHHHHHHHHHhhhhhccchhhhhhhC
Q 024249 239 ----------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 270 (270)
Q Consensus 239 ----------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~ 270 (270)
...|+.+||..|+..+.++.++..++-.+.|.
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~ 288 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWS 288 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC
T ss_pred hhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 25799999999999998888888888777774
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=2.6e-39 Score=275.58 Aligned_cols=254 Identities=39% Similarity=0.699 Sum_probs=211.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
+.|+++|++|+|.++.++.+.+.+.. +.+++.+..++...+.+++|+||||||||+++++++++.+.+++.+++.++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 56788999999999999999998775 78999999999999999999999999999999999999999999999998877
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcC-CCCeEEEEEeCCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMATNRID 163 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~vi~tt~~~~ 163 (270)
.+.+.....++.+|..+....|++|||||+|.+...+...+....+......+..++..+++... ...+.||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 77777667778889999888999999999999987653211111111112233455666655432 23588999999999
Q ss_pred CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 024249 164 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 243 (270)
Q Consensus 164 ~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~ 243 (270)
.+++++.+++||+..+.++.|+.++|.++++.+++......+.++..++..++|++|+||..+|++|...|..++...++
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999988877777888999999999999999999999999998777778999
Q ss_pred HHHHHHHHHHHhhhhh
Q 024249 244 QEDFEMAVAKVMKKET 259 (270)
Q Consensus 244 ~~d~~~a~~~~~~~~~ 259 (270)
.+|+..|+.++.+...
T Consensus 243 ~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 243 QQHLKEAVERGIAGLE 258 (268)
T ss_dssp HHHHHTSCTTCCCCCC
T ss_pred HHHHHHHHHHHhhcch
Confidence 9999999988766543
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.4e-39 Score=314.66 Aligned_cols=266 Identities=38% Similarity=0.713 Sum_probs=217.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
..++.++|++++|+++.++.|.+++..++.+++.+.++++.++.+++|+||||||||++++++|+..+.+++.+++.++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 84 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
..++++.+..++.+|+.+....|+||||||+|.++..+... .........+.+.+++..+++.....+++||+|||.++
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~-~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~ 627 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN-IGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTC-CSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCC-CCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcc
Confidence 99999999999999999999999999999999998876421 11112345677788899998876777899999999999
Q ss_pred CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Q 024249 164 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER----- 238 (270)
Q Consensus 164 ~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~----- 238 (270)
.+|++++|+|||+..++++.|+.++|.+||+.+++......++++..+++.++||+|+||..+|++|...|+++.
T Consensus 628 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~ 707 (806)
T 1ypw_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707 (806)
T ss_dssp GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888888999999999999999999999999999998763
Q ss_pred --------------------CCCCCHHHHHHHHHHHhhhhhccchhhhhhhC
Q 024249 239 --------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 270 (270)
Q Consensus 239 --------------------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~ 270 (270)
...|+.+||+.|+..+.++.++.++..++.|.
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~ 759 (806)
T 1ypw_A 708 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 759 (806)
T ss_dssp -------------------CCTTTTTTSSCCCCCC-----------------
T ss_pred hhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 13688999999999998888888888887773
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=263.86 Aligned_cols=261 Identities=36% Similarity=0.607 Sum_probs=208.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
++++.++++|++|+|.+.+++.|.+++..++.+++.+..++ .++.++||+||||||||++++++|.+.+.+++.+++..
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 46778899999999999999999999999999998887766 45789999999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcC--CCCeEEEEEe
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA--SNKIKVLMAT 159 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~vi~tt 159 (270)
+...+.+.....++.+|..+....|+||||||+|.++..+... ......+...+++..+++... ...+.||++|
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at 259 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG----EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----CEEEEEEE
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc----cchHHHHHHHHHHHHhhcccccCCCCEEEEEec
Confidence 9999999988999999999999999999999999998765321 111122333344444443322 3578999999
Q ss_pred CCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-
Q 024249 160 NRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE- 237 (270)
Q Consensus 160 ~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~- 237 (270)
|.++.+++++++ ||+..+.++.|+.++|.+|++.++..... ..+.++..++..++||+++||..+|+.|...++++
T Consensus 260 n~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 260 NRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp SCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred CCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 99999999999999999999988766432 23446788999999999999999999999999876
Q ss_pred -----------cCCCCCHHHHHHHHHHHhhhhhccchhhhhhh
Q 024249 238 -----------RRIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 269 (270)
Q Consensus 238 -----------~~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~ 269 (270)
....|+.+||..++..+.++.+...+.-.+.|
T Consensus 338 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~ 380 (389)
T 3vfd_A 338 KPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRW 380 (389)
T ss_dssp CCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHH
T ss_pred hhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 23579999999999999888777777766666
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=8.3e-33 Score=267.37 Aligned_cols=248 Identities=40% Similarity=0.748 Sum_probs=217.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
..++++|++|+|+++++++|.+++..|+.+|+.|.++++.++.+++|+|||||||||+++++++..+.+++.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
.+.+.....++.+|+.+....|+++|+||+|.+++.+.. .......+....++..+++......+.+|++||+++.
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC----CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc----ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 888888999999999999999999999999999887632 1222334444555666666555678999999999999
Q ss_pred chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Q 024249 165 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER------ 238 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~------ 238 (270)
+++++.+++||+..+.++.|+.++|.+|++.+........+.++..++..++||+++|+..++.+|...++++.
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 99999999999999999999999999999999988888888899999999999999999999999998887643
Q ss_pred -----------CCCCCHHHHHHHHHHHhh
Q 024249 239 -----------RIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 239 -----------~~~i~~~d~~~a~~~~~~ 256 (270)
...++.+|+..++....+
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred hhhccchhhhhhhhhhhhhhhccccccCc
Confidence 234677788888777654
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=8.2e-29 Score=213.62 Aligned_cols=178 Identities=17% Similarity=0.307 Sum_probs=133.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhchhhHHHHHHHHHH----HhcCCeEEEEcCCCcc
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEIDSI 117 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~~p~il~lDeid~l 117 (270)
+..+|.++||+||||||||++++++|++++.+++.++++++...+.|.....++..|..| ....|+||+|||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567889999999999999999999999999999999999999999999989999999888 5778999999999999
Q ss_pred cCcccCCCCCC-CChHHHHHHHHHHHhhc--------CCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHH
Q 024249 118 GSARMESGSGN-GDSEVQRTMLELLNQLD--------GFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 188 (270)
Q Consensus 118 ~~~~~~~~~~~-~~~~~~~~l~~~l~~l~--------~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~ 188 (270)
++.+...+... .+......+.++++... ......++.||+|||+++.++++++|+|||+..++ .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 87543211111 12234455566654221 11234579999999999999999999999998887 469999
Q ss_pred HHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHH
Q 024249 189 RLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKA 225 (270)
Q Consensus 189 r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~ 225 (270)
|.+|++.++.. .+++...++..++||+++||..
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 99999987653 4678999999999999998863
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=6e-28 Score=220.31 Aligned_cols=205 Identities=20% Similarity=0.270 Sum_probs=139.2
Q ss_pred CCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC--CeEEEEcchhHHH
Q 024249 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQ 84 (270)
Q Consensus 7 ~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~~~i~i~~~~~~~ 84 (270)
|...|++++|+++.++.+..++.... .+..++.++||+||||||||++++++|++++ .+++.++++++..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 45678999999999999988875431 2556788999999999999999999999988 8999999999999
Q ss_pred hhhchhhHHHHHHHHHH---HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH---------------HHHHHHhhc-
Q 024249 85 KYIGEGSRMVRELFVMA---REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT---------------MLELLNQLD- 145 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a---~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~---------------l~~~l~~l~- 145 (270)
.+.+..+. ++..|..| ....|++||+||+|.+++.+...+.++......+. ..++++.++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998877 89999999 77899999999999999887543221111111110 112333332
Q ss_pred -CCcCCCCeEEEEEeCCCCCchhhhcCCCCcce--EEEeCCC--CHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCH
Q 024249 146 -GFEASNKIKVLMATNRIDILDQALLRPGRIDR--KIEFPNP--NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASG 220 (270)
Q Consensus 146 -~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~--~i~~~~p--~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~ 220 (270)
+....+.++|++|||.++.+++++.|+|||+. .+.+|.| +.++|.+|++.+.. .|++.++..++| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 22233345666899999999999999999998 4556666 45778877765542 268889999999 9
Q ss_pred HHHHHHHHH
Q 024249 221 AELKAVCTE 229 (270)
Q Consensus 221 ~dl~~l~~~ 229 (270)
+|+.++|..
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999854
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.90 E-value=7.2e-23 Score=177.19 Aligned_cols=212 Identities=21% Similarity=0.273 Sum_probs=157.0
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCC---CceEEEEcCCCchHHHHHHHHHHhc-------CCeEEEEcchh
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ---PKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE 81 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~---~~~ilL~Gp~GtGKTtl~~~ia~~~-------~~~~i~i~~~~ 81 (270)
++|+|+++.++.+.+++..+. .+..+..+|+.. +.+++|+||||||||++++++|+.+ ..+++.+++.+
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 379999999999999998754 366666667654 3469999999999999999999865 44899999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
+...+.+.....+...|..+ .+++|||||+|.+++.+.+ ..........+..+++.- ..++.+|++|+.
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~---~~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~~ 178 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENN-----RDDLVVILAGYA 178 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC------CCTHHHHHHHHHHHHHC-----TTTCEEEEEECH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc---ccccHHHHHHHHHHHhcC-----CCCEEEEEeCCh
Confidence 88888887777788888776 5679999999999865432 123445555566665542 346788888875
Q ss_pred CC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHc------C-CCCHHHHHHHHH
Q 024249 162 ID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKM------N-GASGAELKAVCT 228 (270)
Q Consensus 162 ~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~------~-g~~~~dl~~l~~ 228 (270)
.. .+++.+++ ||+..+.+++|+.+++..|++.++...... .+..+..++... . .-+++++..+++
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 43 23577777 899999999999999999999988765432 222244455542 2 235899999999
Q ss_pred HHHHHHHHh
Q 024249 229 EAGMFALRE 237 (270)
Q Consensus 229 ~a~~~a~~~ 237 (270)
+|...+..+
T Consensus 257 ~a~~~~~~r 265 (309)
T 3syl_A 257 RARLRQANR 265 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998766543
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.88 E-value=5.8e-21 Score=167.36 Aligned_cols=222 Identities=17% Similarity=0.196 Sum_probs=164.6
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
|.+++++.+|++++|.+..++.+..++...... -.++.+++|+||||||||+++++++...+.+++.+++..
T Consensus 19 ~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp ----CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 567888999999999999999999998864321 134567999999999999999999999999999998876
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcC------------Cc-
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG------------FE- 148 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~------------~~- 148 (270)
+.. ...+...+.. ...+.+|||||+|.+. ...+..+...++...- ..
T Consensus 91 ~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 91 IEK------SGDLAAILTN--LSEGDILFIDEIHRLS------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp CCS------HHHHHHHHHT--CCTTCEEEEETGGGCC------------HHHHHHHHHHHHTSCC---------CCCCCC
T ss_pred ccc------hhHHHHHHHh--ccCCCEEEEechhhcC------------HHHHHHHHHHHHhccchhhcccCccccceec
Confidence 421 1122222221 3467899999998863 3455566666654320 00
Q ss_pred CCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 024249 149 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVC 227 (270)
Q Consensus 149 ~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~ 227 (270)
...++.+|++||....+++++.+ ||+..+.+++|+.+++..+++.+....... .+..+..++..+.| +++.+.+++
T Consensus 151 ~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l 227 (338)
T 3pfi_A 151 DLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLL 227 (338)
T ss_dssp CCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHH
T ss_pred CCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHH
Confidence 01147899999999999999988 899999999999999999999887655432 22335667776655 788999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024249 228 TEAGMFALRERRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 228 ~~a~~~a~~~~~~~i~~~d~~~a~~~~ 254 (270)
+++...+.......++.+++..++...
T Consensus 228 ~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 228 KRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 999887776667789999998888764
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=1.2e-21 Score=173.48 Aligned_cols=222 Identities=21% Similarity=0.247 Sum_probs=154.4
Q ss_pred CCCCC-cccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC--eEEEEcchhH
Q 024249 6 VPDST-YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGSEL 82 (270)
Q Consensus 6 ~~~~~-~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~--~~i~i~~~~~ 82 (270)
+.+.. |++++|.++.++.+..+...... +..++.+++|+||||||||+++++++...++ +++.+++..+
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~l~~~~~~--------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHT--------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred cCcCcchhhccChHHHHHHHHHHHHHHHc--------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 34444 99999999999887665544211 3345689999999999999999999998764 7777776542
Q ss_pred HHhh-------------------------------------------------hchhhHHHHHHHHHHHh-----c----
Q 024249 83 VQKY-------------------------------------------------IGEGSRMVRELFVMARE-----H---- 104 (270)
Q Consensus 83 ~~~~-------------------------------------------------~~~~~~~~~~~~~~a~~-----~---- 104 (270)
...+ .+.....++..+..+.. .
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~ 188 (368)
T 3uk6_A 109 FSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEI 188 (368)
T ss_dssp SCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---
T ss_pred hhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccc
Confidence 2111 11113344444544332 1
Q ss_pred CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC------------CCCCchhhhcCC
Q 024249 105 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN------------RIDILDQALLRP 172 (270)
Q Consensus 105 ~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~------------~~~~l~~~l~r~ 172 (270)
.|+||||||+|.+. ......+...++. ....+ ++++|+ .+..+++.+.+
T Consensus 189 ~~~vl~IDEi~~l~------------~~~~~~L~~~le~-----~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~s- 249 (368)
T 3uk6_A 189 IPGVLFIDEVHMLD------------IESFSFLNRALES-----DMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLD- 249 (368)
T ss_dssp CBCEEEEESGGGSB------------HHHHHHHHHHTTC-----TTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHT-
T ss_pred cCceEEEhhccccC------------hHHHHHHHHHhhC-----cCCCe-eeeecccceeeeeccCCCCcccCCHHHHh-
Confidence 27899999999863 2333334433322 12234 444443 36678888988
Q ss_pred CCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 173 GRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 173 ~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
||.. +.+++|+.+++.++++..+..... ..+..+..++..+.|.+++++..+++.|...|...+...|+.+|++.|+
T Consensus 250 -R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~ 327 (368)
T 3uk6_A 250 -RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVY 327 (368)
T ss_dssp -TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred -hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 7765 899999999999999987765332 2233467788888856999999999999999988888899999999999
Q ss_pred HHHhh
Q 024249 252 AKVMK 256 (270)
Q Consensus 252 ~~~~~ 256 (270)
..++.
T Consensus 328 ~~~~~ 332 (368)
T 3uk6_A 328 SLFLD 332 (368)
T ss_dssp HHSBC
T ss_pred HHhcC
Confidence 87543
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.87 E-value=3.8e-22 Score=185.41 Aligned_cols=225 Identities=24% Similarity=0.360 Sum_probs=142.8
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH-----
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ----- 84 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~----- 84 (270)
.+++++|+++.++.+.+.+...... +.+ ++..++|+|||||||||+++++++..+.++..+++..+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 3467999999999998877653221 223 6788999999999999999999999999999888765432
Q ss_pred ----hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcC--Cc--------CC
Q 024249 85 ----KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--FE--------AS 150 (270)
Q Consensus 85 ----~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~--------~~ 150 (270)
.+.+.....+...|..+....| ++||||+|.+...+.. ..+..+.++++.... +. ..
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 3455555566667777766666 9999999998754311 012223333321110 00 01
Q ss_pred CCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhcc-----CCCC-C--CCC---HHHHHHHcCC-C
Q 024249 151 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR-----MNLM-R--GID---LKKIAEKMNG-A 218 (270)
Q Consensus 151 ~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~-----~~~~-~--~~~---~~~la~~~~g-~ 218 (270)
..+.+|+|||.++.+++++++ ||+ .+.++.|+.+++..|++.++.. .... . .++ +..++....+ .
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 467899999999999999998 884 7999999999999999887522 1111 1 122 3444443333 3
Q ss_pred CHHHHHH----HHHHHHHHHHHh--cCCCCCHHHHHHHHHH
Q 024249 219 SGAELKA----VCTEAGMFALRE--RRIHVTQEDFEMAVAK 253 (270)
Q Consensus 219 ~~~dl~~----l~~~a~~~a~~~--~~~~i~~~d~~~a~~~ 253 (270)
..++|++ +|+.|...++.. ....|+.+|++.++..
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 4455554 444444444433 3457899999988754
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.86 E-value=2.3e-20 Score=162.33 Aligned_cols=224 Identities=19% Similarity=0.233 Sum_probs=161.6
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
|+.+++++.+|++++|.+..++.+.+.+...... -..+..++|+||+|||||+++++++...+.+++.+++.
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 72 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 72 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTT
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 4567889999999999999999999888753210 12457899999999999999999999999999998887
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcC-----Cc-------
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG-----FE------- 148 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~------- 148 (270)
.+.. ...+...|..+ ...+.+|||||+|.+. ...+..+..+++...- ..
T Consensus 73 ~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~------------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~ 133 (324)
T 1hqc_A 73 AIEK------PGDLAAILANS-LEEGDILFIDEIHRLS------------RQAEEHLYPAMEDFVMDIVIGQGPAARTIR 133 (324)
T ss_dssp TCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCC------------HHHHHHHHHHHHHSEEEECCSSSSSCCCEE
T ss_pred ccCC------hHHHHHHHHHh-ccCCCEEEEECCcccc------------cchHHHHHHHHHhhhhHHhccccccccccc
Confidence 6421 11122222211 2467899999998753 3345556666665320 00
Q ss_pred -CCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHH
Q 024249 149 -ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAV 226 (270)
Q Consensus 149 -~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l 226 (270)
...++.+|++||....+++.+.+ ||+..+.+++|+.+++.++++.+....... .+..+..++..+.| +++.+..+
T Consensus 134 ~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~ 210 (324)
T 1hqc_A 134 LELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRL 210 (324)
T ss_dssp EECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHH
T ss_pred cCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHH
Confidence 01257899999999999988877 888899999999999999999887654331 22235677888866 77899999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024249 227 CTEAGMFALRERRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 227 ~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 254 (270)
++.+...+.......++.+++..++...
T Consensus 211 l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 211 FRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 9988776655556678999998887654
No 36
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.86 E-value=2.1e-20 Score=169.54 Aligned_cols=227 Identities=17% Similarity=0.263 Sum_probs=152.5
Q ss_pred CCCccccc-CcHHH--HHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEEEEcc
Q 024249 8 DSTYDMIG-GLDQQ--IKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSG 79 (270)
Q Consensus 8 ~~~~~~i~-G~~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~i~~ 79 (270)
..+|++++ |..+. ...+......+ + . +..++|+||||+|||||++++++.. +..++++++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 45888876 64443 23333333322 1 1 5779999999999999999999866 788999999
Q ss_pred hhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEe
Q 024249 80 SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMAT 159 (270)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt 159 (270)
..+.....+.........|.......|.+|+|||++.+... ...+..+...++.+. ..+..+|++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~----------~~~q~~l~~~l~~l~----~~~~~iIitt 234 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK----------TGVQTELFHTFNELH----DSGKQIVICS 234 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC----------HHHHHHHHHHHHHHH----TTTCEEEEEE
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC----------hHHHHHHHHHHHHHH----HCCCeEEEEE
Confidence 88765544433322222344444447899999999987432 234556666666652 2345566667
Q ss_pred CC-CCC---chhhhcCCCCcc--eEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024249 160 NR-IDI---LDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGM 232 (270)
Q Consensus 160 ~~-~~~---l~~~l~r~~r~~--~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 232 (270)
++ +.. +++.+.+ ||. ..+.+++|+.++|.+|++..+..... .++..+..++..+.| +.+++..++..+..
T Consensus 235 ~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~ 311 (440)
T 2z4s_A 235 DREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLV 311 (440)
T ss_dssp SSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 65 333 6677777 664 67899999999999999987754332 223336788888876 89999999999988
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhhhhhccchh
Q 024249 233 FALRERRIHVTQEDFEMAVAKVMKKETEKNMS 264 (270)
Q Consensus 233 ~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~~~ 264 (270)
.|...+ ..|+.++++.++.+..+....+.++
T Consensus 312 ~a~~~~-~~It~~~~~~~l~~~~~~~~~~~i~ 342 (440)
T 2z4s_A 312 YKETTG-KEVDLKEAILLLKDFIKPNRVKAMD 342 (440)
T ss_dssp HHHHSS-SCCCHHHHHHHTSTTTCC-------
T ss_pred HHHHhC-CCCCHHHHHHHHHHHhhccccccCC
Confidence 876554 4799999999998887433333333
No 37
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.85 E-value=7.2e-20 Score=162.45 Aligned_cols=227 Identities=21% Similarity=0.237 Sum_probs=159.6
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCeEEEEc
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVS 78 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---------~~~~i~i~ 78 (270)
...+++++|.++.++.+.+++...+. -..+..++|+||||||||++++.+++.. +..+++++
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 34568999999999999998866432 1456789999999999999999999876 78889998
Q ss_pred chhHHH------hhh----------ch-hhHHHHHHHHHHHh-cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHH
Q 024249 79 GSELVQ------KYI----------GE-GSRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 140 (270)
Q Consensus 79 ~~~~~~------~~~----------~~-~~~~~~~~~~~a~~-~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~ 140 (270)
+..... ... +. .......++..... ..|.+|+|||+|.+...+ .....+..+
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l 155 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRI 155 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhH
Confidence 764211 100 11 11223333333322 348899999999875321 124456666
Q ss_pred HHhhcCCcCCCCeEEEEEeCCC---CCchhhhcCCCCcce-EEEeCCCCHHHHHHHHHHhhcc--C-CCCCCCCHHHHHH
Q 024249 141 LNQLDGFEASNKIKVLMATNRI---DILDQALLRPGRIDR-KIEFPNPNEESRLDILKIHSRR--M-NLMRGIDLKKIAE 213 (270)
Q Consensus 141 l~~l~~~~~~~~~~vi~tt~~~---~~l~~~l~r~~r~~~-~i~~~~p~~~~r~~il~~~~~~--~-~~~~~~~~~~la~ 213 (270)
+..........++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.++..++++..+.. . ....+..+..++.
T Consensus 156 ~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~ 233 (387)
T 2v1u_A 156 TRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAA 233 (387)
T ss_dssp HHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHH
T ss_pred hhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 6655432114578899999987 667778877 7764 7999999999999999987653 1 1123333566777
Q ss_pred HcC---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 214 KMN---GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 214 ~~~---g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
.+. | .++.+..+++.|...|...+...++.+|+..|+.....
T Consensus 234 ~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 234 LAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 776 5 67888899999998887777788999999999988744
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=1.1e-20 Score=163.24 Aligned_cols=240 Identities=23% Similarity=0.295 Sum_probs=156.4
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcC-CCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH-hhhch
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLG-IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIGE 89 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~-~~~~~ 89 (270)
++++|.++.++.+...+..+..++.....+. -..+.+++|+||||||||+++++++...+.+++.+++..+.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999998876433222111110 135678999999999999999999999999999999988754 23332
Q ss_pred -hhHHHHHHHHHH-----HhcCCeEEEEcCCCcccCcccCCCCCCCChHH---HHHHHHHHHhhcC-----CcCCCCeEE
Q 024249 90 -GSRMVRELFVMA-----REHAPSIIFMDEIDSIGSARMESGSGNGDSEV---QRTMLELLNQLDG-----FEASNKIKV 155 (270)
Q Consensus 90 -~~~~~~~~~~~a-----~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~---~~~l~~~l~~l~~-----~~~~~~~~v 155 (270)
....++.++..+ ....++||||||+|.+.+.... ...+... +..+..+++...- .....++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~---~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 171 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 171 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC---CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc---cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE
Confidence 223455555422 1134689999999999765421 1122221 3344444442100 001236778
Q ss_pred EEEe----CCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhh-----------ccCCC---CCCCCHHHHHHHc--
Q 024249 156 LMAT----NRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHS-----------RRMNL---MRGIDLKKIAEKM-- 215 (270)
Q Consensus 156 i~tt----~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~-----------~~~~~---~~~~~~~~la~~~-- 215 (270)
|+++ +.+..+++.+.+ ||+..+.+++|+.+++.+|++... ..... .++..+..++..+
T Consensus 172 i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 249 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFR 249 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHH
T ss_pred EEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhh
Confidence 8874 566778888887 999889999999999999998311 11111 1222245566665
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHhh
Q 024249 216 -----NGASGAELKAVCTEAGMFALRER------RIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 216 -----~g~~~~dl~~l~~~a~~~a~~~~------~~~i~~~d~~~a~~~~~~ 256 (270)
++.+.+.+..+++++...+..+. ...|+.+|++.++.....
T Consensus 250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 250 VNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred hcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 25688999999998775543221 125999999999876543
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.85 E-value=1.9e-19 Score=147.20 Aligned_cols=206 Identities=22% Similarity=0.246 Sum_probs=148.3
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEEE
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR 76 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~ 76 (270)
|+++.++..|++++|.++.++.+.+++... .+..++|+||+|+|||++++.++... ...++.
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 567888999999999999999999888652 23349999999999999999999864 345777
Q ss_pred EcchhHHHhhhchhhHHHHHHHHHHH------hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCC
Q 024249 77 VSGSELVQKYIGEGSRMVRELFVMAR------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 150 (270)
Q Consensus 77 i~~~~~~~~~~~~~~~~~~~~~~~a~------~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 150 (270)
+++...... ..+...+.... ...+.+|+|||+|.+. ......+..+++.. .
T Consensus 74 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~l~~~l~~~-----~ 130 (226)
T 2chg_A 74 MNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT------------ADAQAALRRTMEMY-----S 130 (226)
T ss_dssp EETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC------------HHHHHHHHHHHHHT-----T
T ss_pred eccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcC------------HHHHHHHHHHHHhc-----C
Confidence 766542211 11222222221 2568899999998863 23344556666543 3
Q ss_pred CCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHH
Q 024249 151 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTE 229 (270)
Q Consensus 151 ~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~ 229 (270)
.+..+|++|+.+..+++.+.+ |+. .+.+++|+.++..++++..+..... ..+..+..+++.+.| +++.+..+++.
T Consensus 131 ~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~ 206 (226)
T 2chg_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQG 206 (226)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 467889999998888888887 776 8999999999999999887654332 122335667777766 77777777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH
Q 024249 230 AGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 230 a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
+...+ ..|+.+|++.++.
T Consensus 207 ~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 207 AAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHTC-----SCBCHHHHHHHHH
T ss_pred HHhcC-----ceecHHHHHHHhc
Confidence 66543 5899999999875
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.84 E-value=2.8e-20 Score=172.06 Aligned_cols=228 Identities=16% Similarity=0.223 Sum_probs=147.4
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhcccc-ChHHHHhcCC---CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIK-HPELFESLGI---AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~-~~~~~~~~~~---~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
+|+++++|.+|++++|.++.++.+.+++..... .+..+...|. .++..++|+||||||||++++++|++.+..++.
T Consensus 28 lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 589999999999999999999999999986322 1122333333 256789999999999999999999999999999
Q ss_pred EcchhHHHhhhchhh-------HHHHHHHHHH-----HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhh
Q 024249 77 VSGSELVQKYIGEGS-------RMVRELFVMA-----REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 144 (270)
Q Consensus 77 i~~~~~~~~~~~~~~-------~~~~~~~~~a-----~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l 144 (270)
+++.+.......... ..+..+|..+ ....+.||+|||+|.+.... ......+..+++..
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---------~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---------RGGVGQLAQFCRKT 178 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---------TTHHHHHHHHHHHC
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---------HHHHHHHHHHHHhc
Confidence 998765332211000 0012222222 23568999999999985421 11233445555432
Q ss_pred cCCcCCCCeEEEEEeCCCC--CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHH
Q 024249 145 DGFEASNKIKVLMATNRID--ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGA 221 (270)
Q Consensus 145 ~~~~~~~~~~vi~tt~~~~--~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~ 221 (270)
+..+|+++++.. .+.+ +. ++...+.+++|+.+++.+++...+..... ..+..+..+++.+.| ..+
T Consensus 179 -------~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR 246 (516)
T 1sxj_A 179 -------STPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIR 246 (516)
T ss_dssp -------SSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHH
T ss_pred -------CCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 233566666543 3332 32 44568999999999999999876644322 233347788888766 444
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024249 222 ELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 222 dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 254 (270)
.+..+++.++ . ....++.+++..++...
T Consensus 247 ~~i~~L~~~~---~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 247 QVINLLSTIS---T--TTKTINHENINEISKAW 274 (516)
T ss_dssp HHHHHHTHHH---H--HSSCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHH---h--cCCCCchHHHHHHHHhh
Confidence 4444444332 2 34467777777776644
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.84 E-value=4.1e-20 Score=161.05 Aligned_cols=207 Identities=21% Similarity=0.273 Sum_probs=140.8
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
.|+++++|.+|++++|.++.++.+.+++... ..+..++++||||||||++++++++..+..+++++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 4789999999999999999999999988742 3456788889999999999999999999999999986
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhc-----CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEE
Q 024249 81 ELVQKYIGEGSRMVRELFVMAREH-----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 155 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~a~~~-----~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v 155 (270)
+.. ...++..+...... .+.+|+|||+|.+.+ ...+..+..+++... .++.+
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~~~~~L~~~le~~~-----~~~~i 139 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AESQRHLRSFMEAYS-----SNCSI 139 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HHHHHHHHHHHHHHG-----GGCEE
T ss_pred ccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HHHHHHHHHHHHhCC-----CCcEE
Confidence 632 22333333332222 578999999998731 234555666666542 35778
Q ss_pred EEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccC-------CC-CCC-CCHHHHHHHcCCCCHHHHHHH
Q 024249 156 LMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM-------NL-MRG-IDLKKIAEKMNGASGAELKAV 226 (270)
Q Consensus 156 i~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~-------~~-~~~-~~~~~la~~~~g~~~~dl~~l 226 (270)
|++||.+..+++.+.+ |+ ..+.+++|+.++|.+|++.+.... .. ..+ ..+..++..+.|- .+++.+.
T Consensus 140 I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd-~R~a~~~ 215 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD-FRKTIGE 215 (324)
T ss_dssp EEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC-TTHHHHH
T ss_pred EEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC-HHHHHHH
Confidence 9999999999999988 66 469999999999877765443221 11 122 3356778887663 3444455
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 227 CTEAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 227 ~~~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
++.++ ....++.+++..++.
T Consensus 216 L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 216 LDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHG------GGTCBCC--------
T ss_pred HHHHh------ccCCCCHHHHHHHhC
Confidence 55444 223466666665443
No 42
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.84 E-value=3.9e-20 Score=157.42 Aligned_cols=211 Identities=20% Similarity=0.249 Sum_probs=139.7
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH-Hhh
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV-QKY 86 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~-~~~ 86 (270)
.....++.|..+..+.+....... ...+...+..++.+++|+||||||||+++++++...+.+++.+++.+.. ...
T Consensus 29 ~~~~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 29 SYIMNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TTCTTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCC
T ss_pred HHHhcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCc
Confidence 334467889988877777642211 1223334456778999999999999999999999999999999876521 111
Q ss_pred hchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc-CCCCeEEEEEeCCCCCc
Q 024249 87 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-ASNKIKVLMATNRIDIL 165 (270)
Q Consensus 87 ~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~vi~tt~~~~~l 165 (270)
.......++..|..+....+++|+|||+|.+++.+... ..........+..+ +++.. ....+.||+|||.++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~l~~L~~~---~~~~~~~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG--PRFSNLVLQALLVL---LKKAPPQGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT--TBCCHHHHHHHHHH---TTCCCSTTCEEEEEEEESCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC--hhHHHHHHHHHHHH---hcCccCCCCCEEEEEecCChhhc
Confidence 12233567788888888889999999999997665321 11223333333333 33222 23467799999998888
Q ss_pred hh-hhcCCCCcceEEEeCCCCH-HHHHHHHHHhhccCCCCCCCCHHHHHHHcCCC----CHHHHHHHHHHHHH
Q 024249 166 DQ-ALLRPGRIDRKIEFPNPNE-ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA----SGAELKAVCTEAGM 232 (270)
Q Consensus 166 ~~-~l~r~~r~~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~----~~~dl~~l~~~a~~ 232 (270)
++ .+.+ ||+..+.+|+++. ++...++.. ... ..+.++..++..+.|| +.+++.++++.|..
T Consensus 181 ~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~-~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 181 QEMEMLN--AFSTTIHVPNIATGEQLLEALEL---LGN-FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp HHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---HTC-SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred chhhhhc--ccceEEcCCCccHHHHHHHHHHh---cCC-CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 87 3444 8998888877665 444444433 222 2345578899999997 67777777776643
No 43
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.83 E-value=1.8e-19 Score=149.20 Aligned_cols=207 Identities=17% Similarity=0.234 Sum_probs=145.3
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe--------
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 73 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~-------- 73 (270)
|.++.++..|++++|.++.++.+.+.+... ..+..++|+||+|+|||++++.+++.....
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 567788899999999999999999888642 234579999999999999999999865321
Q ss_pred ----------------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 74 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 74 ----------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
++.+.... ......++.++..+. ...|.+|+|||+|.+. ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------~~~ 142 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHS 142 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHH
T ss_pred cccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------HHH
Confidence 12222111 011223344444322 2357899999998752 233
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHH
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIA 212 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la 212 (270)
...+...+.. ...++.+|++|++...+++.+.+ |+ ..+.+++++.++..++++.++..... ..+..+..++
T Consensus 143 ~~~l~~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 143 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHHHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4444444432 23578899999998888888877 44 67999999999999999887765332 1223367788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 213 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
+.+.| +++.+..+++.|...+ ...|+.+|++.++
T Consensus 215 ~~~~G-~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 215 RAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp HHHTT-CHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred HHcCC-CHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 89977 8999999998875432 3489999998875
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.81 E-value=9.2e-19 Score=152.61 Aligned_cols=221 Identities=18% Similarity=0.233 Sum_probs=146.7
Q ss_pred CCCCCccccc-Cc--HHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcc
Q 024249 6 VPDSTYDMIG-GL--DQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 79 (270)
Q Consensus 6 ~~~~~~~~i~-G~--~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~ 79 (270)
.|..+|++++ |. ......+..++..+ -..+.+++|+|||||||||+++++++.. +.+++++++
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 3567899986 43 33444555544432 1246789999999999999999999977 889999999
Q ss_pred hhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEe
Q 024249 80 SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMAT 159 (270)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt 159 (270)
.++.....+.........|.... ..+.+|+|||++.+.. +...+..+..+++.+. ..+..+|++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~----------~~~~~~~l~~~l~~~~---~~~~~iii~~~ 139 (324)
T 1l8q_A 74 DDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSG----------KERTQIEFFHIFNTLY---LLEKQIILASD 139 (324)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTT----------CHHHHHHHHHHHHHHH---HTTCEEEEEES
T ss_pred HHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccC----------ChHHHHHHHHHHHHHH---HCCCeEEEEec
Confidence 88766554433322222233222 3478999999998743 2234555666666542 23345555555
Q ss_pred CCCC---CchhhhcCCCCcc--eEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 024249 160 NRID---ILDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMF 233 (270)
Q Consensus 160 ~~~~---~l~~~l~r~~r~~--~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~ 233 (270)
+.+. .+++.+.+ ||. ..+.+++ +.+++.+|++..+..... .++..+..++..+ | +.+++..++..+...
T Consensus 140 ~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 140 RHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp SCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred CChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 5554 57778877 664 6789999 999999999988765433 1223367788888 4 788888888877655
Q ss_pred ---HHH-hcCCCC-CHHHHHHHHHHHhh
Q 024249 234 ---ALR-ERRIHV-TQEDFEMAVAKVMK 256 (270)
Q Consensus 234 ---a~~-~~~~~i-~~~d~~~a~~~~~~ 256 (270)
++. .....+ +.+++.+++.....
T Consensus 215 ~~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 215 GFEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHhccccccCCCCHHHHHHHHHHHhC
Confidence 111 223457 78888888876543
No 45
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.81 E-value=5.8e-21 Score=171.68 Aligned_cols=169 Identities=21% Similarity=0.283 Sum_probs=83.6
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCC-CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH-hhhch
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIA-QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIGE 89 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~-~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~-~~~~~ 89 (270)
++|+|+++.++.+...+..+.+++..+..+... ++.+++|+||||||||++++++|+.++.+++.++++.+.. .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 579999999999999998877766655544432 5688999999999999999999999999999999988877 47774
Q ss_pred -hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEE-eCCCCCchh
Q 024249 90 -GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA-TNRIDILDQ 167 (270)
Q Consensus 90 -~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~t-t~~~~~l~~ 167 (270)
.+..++.+|..+.... ++||++.+.... ......+.+..++..++++.....+ +++ ||+++.+++
T Consensus 95 d~e~~lr~lf~~a~~~~----~~De~d~~~~~~-------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLV----RQQEIAKNRARA-------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp CTHHHHHHHHHHHHHHH----HHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcc----hhhhhhhhhccc-------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 7888899998887654 378887764321 1122345666777777776444443 455 999999999
Q ss_pred hhcCCCCcceEEEeCCCCHH-HHHHHH
Q 024249 168 ALLRPGRIDRKIEFPNPNEE-SRLDIL 193 (270)
Q Consensus 168 ~l~r~~r~~~~i~~~~p~~~-~r~~il 193 (270)
+++|+||||+.|+++.|+.. .|.+|+
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999987 777776
No 46
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.81 E-value=1.4e-18 Score=154.34 Aligned_cols=215 Identities=19% Similarity=0.228 Sum_probs=150.1
Q ss_pred cccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----------CCeEEEEcc
Q 024249 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----------DCTFIRVSG 79 (270)
Q Consensus 11 ~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----------~~~~i~i~~ 79 (270)
+++++|.++.++.+.+.+...... ..+..++|+||+|+|||++++++++.. +..++++++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 478999999999999988765331 346789999999999999999999876 889999987
Q ss_pred hhHH-Hh------hh-----------ch-hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH-HHH
Q 024249 80 SELV-QK------YI-----------GE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT-MLE 139 (270)
Q Consensus 80 ~~~~-~~------~~-----------~~-~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~-l~~ 139 (270)
.... .. .. +. ....+..++..+ ...+.+|+|||+|.+.... . ... +..
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~vlilDEi~~l~~~~-------~----~~~~l~~ 157 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT-RNIRAIIYLDEVDTLVKRR-------G----GDIVLYQ 157 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH-SSSCEEEEEETTHHHHHST-------T----SHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh-ccCCCEEEEECHHHhccCC-------C----CceeHHH
Confidence 6543 10 01 00 012233333333 3333499999999875321 0 112 233
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCC---CCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhcc-C--CCCCCCCHHHHHH
Q 024249 140 LLNQLDGFEASNKIKVLMATNRI---DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR-M--NLMRGIDLKKIAE 213 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~---~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~-~--~~~~~~~~~~la~ 213 (270)
++... .++.+|++|+.. +.+++.+.+ ||...+.+++|+.++..++++..+.. + ....+..+..++.
T Consensus 158 l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~ 229 (384)
T 2qby_B 158 LLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAA 229 (384)
T ss_dssp HHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHH
T ss_pred HhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHH
Confidence 33221 578899999987 567777777 77669999999999999999987653 1 1122233566777
Q ss_pred HcCC--CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 214 KMNG--ASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 214 ~~~g--~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
.+.+ -..+.+..+++.|...|. +...++.+|+..++.....
T Consensus 230 ~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 230 ISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 7762 256777788888887775 5568999999999988754
No 47
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.81 E-value=3e-18 Score=151.84 Aligned_cols=225 Identities=21% Similarity=0.306 Sum_probs=152.8
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc------CCeEEEEcchh
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGSE 81 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~------~~~~i~i~~~~ 81 (270)
...+++++|.++.++.+.+.+...+.. ..+..++|+||+|+|||++++.+++.. +.+++++++..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 345689999999999999888764321 456789999999999999999999876 88899998764
Q ss_pred HHH------hh----------hch-hhHHHHHHHHHHHhc-CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHh
Q 024249 82 LVQ------KY----------IGE-GSRMVRELFVMAREH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 143 (270)
Q Consensus 82 ~~~------~~----------~~~-~~~~~~~~~~~a~~~-~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 143 (270)
... .. .+. .......++...... .|.+|+|||++.+.... +.. .+..++..
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~--------~~~---~l~~l~~~ 155 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY--------NDD---ILYKLSRI 155 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS--------CST---HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC--------cCH---HHHHHhhc
Confidence 321 10 011 112233333333333 38999999999875421 111 23333333
Q ss_pred hcCCcCCCCeEEEEEeCCCC---CchhhhcCCCCcc-eEEEeCCCCHHHHHHHHHHhhccCC---CCCCCCHHHHHHHcC
Q 024249 144 LDGFEASNKIKVLMATNRID---ILDQALLRPGRID-RKIEFPNPNEESRLDILKIHSRRMN---LMRGIDLKKIAEKMN 216 (270)
Q Consensus 144 l~~~~~~~~~~vi~tt~~~~---~l~~~l~r~~r~~-~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~~la~~~~ 216 (270)
++.. ...++.+|++||+++ .+++.+.+ ||. ..+.+++++.++..++++..+.... ...+.....++..+.
T Consensus 156 ~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 156 NSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp HHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHH
T ss_pred hhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 3221 345788999999874 45566655 554 5899999999999999988654321 111222455666665
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 217 ---GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 217 ---g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
| +++.+..+++.|...+...+...++.+|++.|+..+..
T Consensus 233 ~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 233 REHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp HTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred HhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 5 67777789999988887777789999999999888754
No 48
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.81 E-value=9e-20 Score=145.85 Aligned_cols=163 Identities=24% Similarity=0.372 Sum_probs=118.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCe
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCT 73 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~ 73 (270)
+++++..|++++|.++.++.+.+.+.. ..+.+++|+||+|||||+++++++... +.+
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T 1jbk_A 14 ERAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 80 (195)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCE
T ss_pred HHHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCc
Confidence 345677899999999999999888754 246779999999999999999999864 678
Q ss_pred EEEEcchhHHH--hhhchhhHHHHHHHHHHH-hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCC
Q 024249 74 FIRVSGSELVQ--KYIGEGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 150 (270)
Q Consensus 74 ~i~i~~~~~~~--~~~~~~~~~~~~~~~~a~-~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 150 (270)
++.+++..+.. .+.+.....+..++..+. ...|.+|+|||+|.+.+.+.. .........+..++. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~----~~~~~~~~~l~~~~~-------~ 149 (195)
T 1jbk_A 81 VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA----DGAMDAGNMLKPALA-------R 149 (195)
T ss_dssp EEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------CCCCHHHHHHHHH-------T
T ss_pred EEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc----cchHHHHHHHHHhhc-------c
Confidence 88988877652 334445556667776553 456889999999998754321 111112333333332 3
Q ss_pred CCeEEEEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHH
Q 024249 151 NKIKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDIL 193 (270)
Q Consensus 151 ~~~~vi~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il 193 (270)
.++.+|++|+..+ .+++.+.+ ||. .+.+++|+.+++.+|+
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 4677888888776 67888888 887 6999999999998775
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.81 E-value=1.1e-18 Score=153.24 Aligned_cols=215 Identities=20% Similarity=0.232 Sum_probs=146.3
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC------CeEE
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFI 75 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~------~~~i 75 (270)
|+++++|.+|++++|.++.++.+...+... ...+++|+||||+|||++++++++... ..++
T Consensus 27 ~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp HHHHTCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHhcCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 678899999999999999999988887642 123499999999999999999998643 4577
Q ss_pred EEcchhHHHhhhchhhHHHHHHHHH-----------H-HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHh
Q 024249 76 RVSGSELVQKYIGEGSRMVRELFVM-----------A-REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 143 (270)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~~~-----------a-~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 143 (270)
.+++.+... .+.....+...... . ....+.||+|||+|.+. ...+..+...++.
T Consensus 94 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~------------~~~~~~Ll~~le~ 159 (353)
T 1sxj_D 94 ELNASDERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT------------ADAQSALRRTMET 159 (353)
T ss_dssp EECSSSCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC------------HHHHHHHHHHHHH
T ss_pred EEccccccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC------------HHHHHHHHHHHHh
Confidence 777655311 01111111111100 0 01345799999998763 2344556666665
Q ss_pred hcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHH
Q 024249 144 LDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAE 222 (270)
Q Consensus 144 l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~d 222 (270)
. .....+|++||.+..+.+.+.+ |+. .+.+++|+.++...+++..+..... ..+..+..++..+.| +.+.
T Consensus 160 ~-----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~ 230 (353)
T 1sxj_D 160 Y-----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRR 230 (353)
T ss_dssp T-----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHH
T ss_pred c-----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 4 2356677888988888888877 664 7899999999999999887654332 223346778888877 5666
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHHH
Q 024249 223 LKAVCTEAGMFALRERRI-HVTQEDFEMAVA 252 (270)
Q Consensus 223 l~~l~~~a~~~a~~~~~~-~i~~~d~~~a~~ 252 (270)
+.++++.+...+-+.+.. .|+.+|+..++.
T Consensus 231 ~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 231 GITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 667777766655333222 689999887654
No 50
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.80 E-value=9.5e-19 Score=158.70 Aligned_cols=209 Identities=22% Similarity=0.259 Sum_probs=147.0
Q ss_pred cccCCCCCcccccCcHHHH---HHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcc
Q 024249 3 VEKVPDSTYDMIGGLDQQI---KEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 79 (270)
Q Consensus 3 ~~~~~~~~~~~i~G~~~~~---~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~ 79 (270)
.++.++.+|++++|.+..+ +.|...+... ...+++|+|||||||||++++|++..+.+++.+++
T Consensus 17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET
T ss_pred HHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 3567789999999999998 6777777652 23679999999999999999999999999999886
Q ss_pred hhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEE
Q 024249 80 SELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 155 (270)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v 155 (270)
.... ...++..+..+. ...+.+|||||+|.+... .+..+...++. ..+++
T Consensus 84 ~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~-------~~v~l 137 (447)
T 3pvs_A 84 VTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED-------GTITF 137 (447)
T ss_dssp TTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT-------TSCEE
T ss_pred ccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc-------CceEE
Confidence 5422 223444444443 357899999999987432 12223333332 35667
Q ss_pred EEEeC--CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC--------CCCCCHHHHHHHcCCCCHHHHHH
Q 024249 156 LMATN--RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL--------MRGIDLKKIAEKMNGASGAELKA 225 (270)
Q Consensus 156 i~tt~--~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~--------~~~~~~~~la~~~~g~~~~dl~~ 225 (270)
|++|+ ....+++++.+ |+. .+.+++|+.++...+++..+..... ..+..+..++..+.| +.+.+.+
T Consensus 138 I~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln 213 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALN 213 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHH
T ss_pred EecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHH
Confidence 77663 33468888888 664 6889999999999999988765221 122235677888766 7888889
Q ss_pred HHHHHHHHHHHh--cCCCCCHHHHHHHHHHH
Q 024249 226 VCTEAGMFALRE--RRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 226 l~~~a~~~a~~~--~~~~i~~~d~~~a~~~~ 254 (270)
+++.+...+... +...|+.++++.++...
T Consensus 214 ~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 214 TLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 999888766322 33579999998887654
No 51
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.80 E-value=1.2e-18 Score=168.23 Aligned_cols=224 Identities=26% Similarity=0.348 Sum_probs=160.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeEE
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFI 75 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~i 75 (270)
..+..|++++|.++.++.+.+.+.. ..+.+++|+||||||||+++++++... ++.++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 3456789999999999998887764 246789999999999999999999864 66677
Q ss_pred EEcchhHH--HhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCe
Q 024249 76 RVSGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 153 (270)
Q Consensus 76 ~i~~~~~~--~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 153 (270)
.++...+. ..+.+..+..++.+|..+....+.+|||||+|.++++... .... .....++..+ .....+
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~----~~~~---~~~~~~L~~~---l~~~~~ 316 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA----SGGQ---VDAANLIKPL---LSSGKI 316 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS----SSCH---HHHHHHHSSC---SSSCCC
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC----Ccch---HHHHHHHHHH---HhCCCe
Confidence 77776665 3466777888999999888888999999999999875421 1111 1222333322 345678
Q ss_pred EEEEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-----CCCCCHHHHHHHcCC-----C
Q 024249 154 KVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-----MRGIDLKKIAEKMNG-----A 218 (270)
Q Consensus 154 ~vi~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-----~~~~~~~~la~~~~g-----~ 218 (270)
.+|++|+..+ .+++++.+ ||. .+.++.|+.+++.+|++.+...+.. ..+..+..++..+.| +
T Consensus 317 ~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~ 393 (758)
T 1r6b_X 317 RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_dssp EEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred EEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccccc
Confidence 8888888542 46778887 887 6999999999999999877654221 111224455555443 5
Q ss_pred CHHHHHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHHh
Q 024249 219 SGAELKAVCTEAGMFALR----ERRIHVTQEDFEMAVAKVM 255 (270)
Q Consensus 219 ~~~dl~~l~~~a~~~a~~----~~~~~i~~~d~~~a~~~~~ 255 (270)
.+..+..++.+|+..+.. .....++.+|+..++..+.
T Consensus 394 lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 394 LPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp TTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 667888888888765543 2346799999999998875
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.79 E-value=9e-19 Score=153.05 Aligned_cols=221 Identities=24% Similarity=0.288 Sum_probs=149.8
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch---
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS--- 80 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~--- 80 (270)
+++.+..++++.|.++.++.+...+.. +.+++|+||||||||++++++++..+.+++.+.+.
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~ 83 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDL 83 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 344455668899999998888776653 35799999999999999999999999998888763
Q ss_pred ---hHHHhhhchhhHHHHHHHHHHHhcC---CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc----C--Cc
Q 024249 81 ---ELVQKYIGEGSRMVRELFVMAREHA---PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD----G--FE 148 (270)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~a~~~~---p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~----~--~~ 148 (270)
++.+........ ..+ ..... ..++||||+|.+ ++..+..+.+.++.-. + ..
T Consensus 84 ~~~~l~g~~~~~~~~---~~~--~~~~g~l~~~vl~iDEi~~~------------~~~~~~~Ll~~l~~~~~~~~g~~~~ 146 (331)
T 2r44_A 84 LPSDLIGTMIYNQHK---GNF--EVKKGPVFSNFILADEVNRS------------PAKVQSALLECMQEKQVTIGDTTYP 146 (331)
T ss_dssp CHHHHHEEEEEETTT---TEE--EEEECTTCSSEEEEETGGGS------------CHHHHHHHHHHHHHSEEEETTEEEE
T ss_pred ChhhcCCceeecCCC---Cce--EeccCcccccEEEEEccccC------------CHHHHHHHHHHHhcCceeeCCEEEE
Confidence 121111100000 000 00111 369999999874 2345566666666421 0 01
Q ss_pred CCCCeEEEEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC---C---------------C
Q 024249 149 ASNKIKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM---R---------------G 205 (270)
Q Consensus 149 ~~~~~~vi~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~---~---------------~ 205 (270)
......+|+|+|..+ .+++++.+ ||+..+.++.|+.+++.+|++......... . .
T Consensus 147 ~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 224 (331)
T 2r44_A 147 LDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINK 224 (331)
T ss_dssp CCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhcc
Confidence 233566777777443 37889988 998889999999999999998876542110 0 1
Q ss_pred --CC---HHHHHHHc-------------------CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhh
Q 024249 206 --ID---LKKIAEKM-------------------NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 258 (270)
Q Consensus 206 --~~---~~~la~~~-------------------~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 258 (270)
++ +..++... .|.+++.+..+++.|...|...++..++.+|+..++..+++..
T Consensus 225 v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 225 VTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp CBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 11 22333221 2568999999999998888888888899999999999987643
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.79 E-value=8.7e-18 Score=147.48 Aligned_cols=225 Identities=15% Similarity=0.187 Sum_probs=141.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe-----------
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT----------- 73 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~----------- 73 (270)
..++.+|++++|.++.++.+......+ .+.+++|+||||||||+++++++...+..
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 356789999999999777654443321 23459999999999999999999876531
Q ss_pred ----------------------EEEEcchhHHHhhhchhhHHHHHHHHHH---------HhcCCeEEEEcCCCcccCccc
Q 024249 74 ----------------------FIRVSGSELVQKYIGEGSRMVRELFVMA---------REHAPSIIFMDEIDSIGSARM 122 (270)
Q Consensus 74 ----------------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a---------~~~~p~il~lDeid~l~~~~~ 122 (270)
++.+..........+.. .+...+..+ ....+.+|||||+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~---- 157 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE---- 157 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC----
T ss_pred ccccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC----
Confidence 11111110001111110 011111111 11246899999998763
Q ss_pred CCCCCCCChHHHHHHHHHHHhh----cCCc----CCCCeEEEEEeCCCC-CchhhhcCCCCcceEEEeCCC-CHHHHHHH
Q 024249 123 ESGSGNGDSEVQRTMLELLNQL----DGFE----ASNKIKVLMATNRID-ILDQALLRPGRIDRKIEFPNP-NEESRLDI 192 (270)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~l~~l----~~~~----~~~~~~vi~tt~~~~-~l~~~l~r~~r~~~~i~~~~p-~~~~r~~i 192 (270)
...+..+...++.- .... ....+.+|++||..+ .+++++.+ ||+..+.+++| +.+++.+|
T Consensus 158 --------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 158 --------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp --------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 33455666666641 1100 012677888998644 78899988 99888999988 67788788
Q ss_pred HHHhhc---------------------------c-C-C-CCCCCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhcC
Q 024249 193 LKIHSR---------------------------R-M-N-LMRGIDLKKIAEKMNG---ASGAELKAVCTEAGMFALRERR 239 (270)
Q Consensus 193 l~~~~~---------------------------~-~-~-~~~~~~~~~la~~~~g---~~~~dl~~l~~~a~~~a~~~~~ 239 (270)
++.... . . . ..++.-+..++....+ -+.+.+..+++.|...|..+++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~ 307 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA 307 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 865211 0 0 0 1111123444444432 2679999999999988887787
Q ss_pred CCCCHHHHHHHHHHHhhhh
Q 024249 240 IHVTQEDFEMAVAKVMKKE 258 (270)
Q Consensus 240 ~~i~~~d~~~a~~~~~~~~ 258 (270)
..++.+|+..|+..+++..
T Consensus 308 ~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 308 TAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp SBCCHHHHHHHHHHHHGGG
T ss_pred CcCCHHHHHHHHHHHHhhc
Confidence 7899999999999887643
No 54
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.79 E-value=6e-18 Score=150.34 Aligned_cols=225 Identities=16% Similarity=0.199 Sum_probs=153.1
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCc--eEEEEcCCCchHHHHHHHHHHhc----CCeEEEEcchh
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPK--GVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSE 81 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~--~ilL~Gp~GtGKTtl~~~ia~~~----~~~~i~i~~~~ 81 (270)
...+++++|.++.++.+.+++...+.. ..+. .++|+||+|+|||++++++++.. +..++++++..
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 345589999999999999988764321 2344 89999999999999999999876 56788888654
Q ss_pred HH------Hhh---h-------ch-hhHHHHHHHHHHH-hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHh
Q 024249 82 LV------QKY---I-------GE-GSRMVRELFVMAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 143 (270)
Q Consensus 82 ~~------~~~---~-------~~-~~~~~~~~~~~a~-~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 143 (270)
.. ... . +. .......+..... ...|.+|+|||+|.+ +......+..++..
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l------------~~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL------------APDILSTFIRLGQE 151 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS------------CHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc------------chHHHHHHHHHHHh
Confidence 22 110 0 10 1111222222222 245899999999875 23344444444433
Q ss_pred hcCCcCCCCeEEEEEeCCC---CCchhhhcCCCCcce-EEEeCCCCHHHHHHHHHHhhccCC---CCCCCCHHHHHHHcC
Q 024249 144 LDGFEASNKIKVLMATNRI---DILDQALLRPGRIDR-KIEFPNPNEESRLDILKIHSRRMN---LMRGIDLKKIAEKMN 216 (270)
Q Consensus 144 l~~~~~~~~~~vi~tt~~~---~~l~~~l~r~~r~~~-~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~~la~~~~ 216 (270)
+.. ....++.+|++||++ +.+++.+.+ ||.. .+.+++++.++..++++..+.... ...+..+..++..+.
T Consensus 152 ~~~-~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 152 ADK-LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp HHH-HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred CCC-CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 310 001478899999987 455666555 5654 799999999999999988765411 122233567788883
Q ss_pred --------CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 217 --------GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 217 --------g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
+-.++.+..+++.|...|..++...++.+|+..++.....
T Consensus 229 ~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 229 AQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp BSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC
T ss_pred hcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh
Confidence 2267888899999998888777788999999999887654
No 55
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=3.4e-18 Score=150.50 Aligned_cols=196 Identities=18% Similarity=0.265 Sum_probs=135.0
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHh-hccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCe---
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVI-ELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCT--- 73 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l-~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~--- 73 (270)
+||++++|.+|++++|.+..++.+...+ ... ..+. ++|+||||+||||+++++++.. +.+
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~------------~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPR------------DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTT------------CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCC------------CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 5899999999999999999998888776 321 2233 9999999999999999999853 111
Q ss_pred -----------------------EEEEcchhHHHhhhchhhHHHHHHHHHHH--------------hcCCeEEEEcCCCc
Q 024249 74 -----------------------FIRVSGSELVQKYIGEGSRMVRELFVMAR--------------EHAPSIIFMDEIDS 116 (270)
Q Consensus 74 -----------------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~--------------~~~p~il~lDeid~ 116 (270)
++.++..+... . ....++..+..+. ...|.+++|||++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMGN---N-DRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS 145 (354)
T ss_dssp ----------------CCEECSSEEEECCC-------C-CHHHHHHHHHHHTTTTC------------CCEEEEEECTTS
T ss_pred ecceeecccccccceeeeecccceEEecHhhcCC---c-chHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc
Confidence 22222221100 0 0012333333332 33688999999765
Q ss_pred ccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHh
Q 024249 117 IGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH 196 (270)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~ 196 (270)
.+...+..+...++.. ..+.++|++||+++.+.+.+.+ |+ ..+.+++|+.++..++++..
T Consensus 146 ------------L~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 146 ------------LTKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp ------------SCHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred ------------cCHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHH
Confidence 3455667777777664 2368899999999999988887 66 67999999999999999887
Q ss_pred hccCCC-CC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 024249 197 SRRMNL-MR-GIDLKKIAEKMNGASGAELKAVCTEAGMFA 234 (270)
Q Consensus 197 ~~~~~~-~~-~~~~~~la~~~~g~~~~dl~~l~~~a~~~a 234 (270)
+..... .. +..+..++..+.| +.+++..+++.+...+
T Consensus 206 ~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 206 VTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred HHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 654332 12 3346778888866 6777777777666543
No 56
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.79 E-value=6.9e-18 Score=140.01 Aligned_cols=205 Identities=13% Similarity=0.149 Sum_probs=139.2
Q ss_pred CCCcccccCc---HHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchh
Q 024249 8 DSTYDMIGGL---DQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE 81 (270)
Q Consensus 8 ~~~~~~i~G~---~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~ 81 (270)
+.+|+++.|- +..++.+..++.. ..+..++|+||||||||+++++++... +..++++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3788998872 4555666555543 246789999999999999999999754 46778888877
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
+....... + . ....|.+|+|||+|.+.. +......+..+++... ......+|++|+.
T Consensus 91 ~~~~~~~~----~----~--~~~~~~vliiDe~~~~~~----------~~~~~~~l~~~l~~~~---~~~~~~ii~~~~~ 147 (242)
T 3bos_A 91 HASISTAL----L----E--GLEQFDLICIDDVDAVAG----------HPLWEEAIFDLYNRVA---EQKRGSLIVSASA 147 (242)
T ss_dssp GGGSCGGG----G----T--TGGGSSEEEEETGGGGTT----------CHHHHHHHHHHHHHHH---HHCSCEEEEEESS
T ss_pred HHHHHHHH----H----H--hccCCCEEEEeccccccC----------CHHHHHHHHHHHHHHH---HcCCCeEEEEcCC
Confidence 54432111 1 1 124578999999988632 1223455666665542 2223335555553
Q ss_pred -CC---CchhhhcCCCCcc--eEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 024249 162 -ID---ILDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFA 234 (270)
Q Consensus 162 -~~---~l~~~l~r~~r~~--~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a 234 (270)
+. .+.+.+.+ ||. ..+.+++|+.+++.++++.++..... ..+..+..++..+.| +.+++..+++.+...|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 33 34456666 554 78999999999999999988764432 122235677888766 8899999999998887
Q ss_pred HHhcCCCCCHHHHHHHHH
Q 024249 235 LRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 235 ~~~~~~~i~~~d~~~a~~ 252 (270)
...+ ..|+.++++.++.
T Consensus 225 ~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 225 MVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHT-CCCCHHHHHHHHT
T ss_pred HHhC-CCCcHHHHHHHhh
Confidence 5544 4699999998874
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.78 E-value=3.2e-17 Score=143.57 Aligned_cols=223 Identities=19% Similarity=0.239 Sum_probs=156.6
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
+++.+.+.++++++|.+..++.+...+...... + .++..++|+||||+|||||++++|+..++.+...++..
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 478888999999999999888888776542110 1 34577999999999999999999999988776665543
Q ss_pred HHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc-------CCc------
Q 024249 82 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD-------GFE------ 148 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~-------~~~------ 148 (270)
+.. ...+...+.. ...+.|+++||++.+.+ .....+...+.... +..
T Consensus 87 ~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~ 146 (334)
T 1in4_A 87 LVK------QGDMAAILTS--LERGDVLFIDEIHRLNK------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRI 146 (334)
T ss_dssp CCS------HHHHHHHHHH--CCTTCEEEEETGGGCCH------------HHHHHHHHHHHTSCCCC-------------
T ss_pred hcC------HHHHHHHHHH--ccCCCEEEEcchhhcCH------------HHHHHHHHHHHhcccceeeccCcccccccc
Confidence 211 1112222221 23567999999987632 22333333333211 000
Q ss_pred CCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 024249 149 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVC 227 (270)
Q Consensus 149 ~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~ 227 (270)
.-..+.++.+|+.+..++..+++ ||...+.+++|+.++..++++......... .+..+..++.++.| +++++..++
T Consensus 147 ~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll 223 (334)
T 1in4_A 147 DIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLT 223 (334)
T ss_dssp --CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHH
T ss_pred cCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHH
Confidence 01236677899999999999988 888788999999999999999876654332 22235678888877 678999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 024249 228 TEAGMFALRERRIHVTQEDFEMAVAKVM 255 (270)
Q Consensus 228 ~~a~~~a~~~~~~~i~~~d~~~a~~~~~ 255 (270)
+++...|..++...|+.++++.|+....
T Consensus 224 ~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 224 KRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 9998888777777899999999998753
No 58
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.78 E-value=4.8e-18 Score=155.26 Aligned_cols=209 Identities=22% Similarity=0.281 Sum_probs=141.2
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCe
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCT 73 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~ 73 (270)
+..++..+++|+|.++.++.+.+.+... ...+++|+||||||||++++++|... +..
T Consensus 172 ~~~r~~~ld~iiGr~~~i~~l~~~l~r~-------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 238 (468)
T 3pxg_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSRR-------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (468)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHCS-------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHhcCCCCCccCcHHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCe
Confidence 4566778899999999999999888652 35678999999999999999999875 677
Q ss_pred EEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCe
Q 024249 74 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 153 (270)
Q Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 153 (270)
++.+++. ..+.|..+..++.+|..+....|.|||||- . .+ ..+ .++..+ ....+
T Consensus 239 ~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~------~--------~~--a~~---~L~~~L----~~g~v 292 (468)
T 3pxg_A 239 VMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFIDA------A--------ID--ASN---ILKPSL----ARGEL 292 (468)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEECC---------------------------CCCT----TSSSC
T ss_pred EEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEeC------c--------hh--HHH---HHHHhh----cCCCE
Confidence 8888877 566777778889999999888899999991 0 00 111 111222 34578
Q ss_pred EEEEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCC-----CHHHHHHHcCCC-----
Q 024249 154 KVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI-----DLKKIAEKMNGA----- 218 (270)
Q Consensus 154 ~vi~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-----~~~~la~~~~g~----- 218 (270)
.+|++||..+ .+++++.+ ||. .+.++.|+.+++.+|++.+...+....++ .+..++..+.+|
T Consensus 293 ~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~ 369 (468)
T 3pxg_A 293 QCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (468)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred EEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCc
Confidence 8999999877 58889988 897 59999999999999999887664322222 244555555443
Q ss_pred CHHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHH
Q 024249 219 SGAELKAVCTEAGMFALRE-RRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 219 ~~~dl~~l~~~a~~~a~~~-~~~~i~~~d~~~a~~~~ 254 (270)
.+.....++.+|+..+..+ ...+-.-.+++..+..+
T Consensus 370 lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 370 LPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 4557778888877655332 23333445555555544
No 59
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=3.9e-18 Score=150.97 Aligned_cols=235 Identities=21% Similarity=0.314 Sum_probs=148.0
Q ss_pred cccCcHHHHHHHHHHhhccccChHHHHh-cCC-CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh-hhch
Q 024249 13 MIGGLDQQIKEIKEVIELPIKHPELFES-LGI-AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGE 89 (270)
Q Consensus 13 ~i~G~~~~~~~l~~~l~~~l~~~~~~~~-~~~-~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~-~~~~ 89 (270)
.|+|++..++.+...+............ ... .++.+++|+||||||||++++++|..++.+++.+++..+... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999999988654322111000 111 256789999999999999999999999999999999887643 5555
Q ss_pred h-hHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCCCCCCCChH---HHHHHHHHHHhhc------C---------
Q 024249 90 G-SRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGDSE---VQRTMLELLNQLD------G--------- 146 (270)
Q Consensus 90 ~-~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~~~~~~~~~---~~~~l~~~l~~l~------~--------- 146 (270)
. ...+..+|..+ ....++||||||+|.+.+.+.... .+.+.. .+..+..+|+... +
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~-~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPS-ITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccc-cccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 3 44566666654 334678999999999987653321 112222 4455555554110 0
Q ss_pred -CcCCCCeEEEEEeCCC----------CC-----------------------------------chhhhcCCCCcceEEE
Q 024249 147 -FEASNKIKVLMATNRI----------DI-----------------------------------LDQALLRPGRIDRKIE 180 (270)
Q Consensus 147 -~~~~~~~~vi~tt~~~----------~~-----------------------------------l~~~l~r~~r~~~~i~ 180 (270)
+-...++.+|++++.. .. +.+.+.. ||+..+.
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~ 252 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVAT 252 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEE
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeee
Confidence 0112234455555532 11 3455555 9999999
Q ss_pred eCCCCHHHHHHHHHH----hhccC-------CCCCCCC---HHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhcC-----
Q 024249 181 FPNPNEESRLDILKI----HSRRM-------NLMRGID---LKKIAE--KMNGASGAELKAVCTEAGMFALRERR----- 239 (270)
Q Consensus 181 ~~~p~~~~r~~il~~----~~~~~-------~~~~~~~---~~~la~--~~~g~~~~dl~~l~~~a~~~a~~~~~----- 239 (270)
+++|+.+++.+|+.. +...+ ...-.++ +..|+. ....+.+++|+++++++...++.+..
T Consensus 253 ~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~ 332 (363)
T 3hws_A 253 LNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDV 332 (363)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCC
Confidence 999999999999875 22111 1111122 445554 33566789999999999888776532
Q ss_pred --CCCCHHHHHHH
Q 024249 240 --IHVTQEDFEMA 250 (270)
Q Consensus 240 --~~i~~~d~~~a 250 (270)
..|+.+++++.
T Consensus 333 ~~~~I~~~~v~~~ 345 (363)
T 3hws_A 333 EKVVIDESVIDGQ 345 (363)
T ss_dssp EEEECHHHHTTCC
T ss_pred ceeEEcHHHHhCc
Confidence 24666665543
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.4e-18 Score=148.86 Aligned_cols=214 Identities=11% Similarity=0.131 Sum_probs=145.0
Q ss_pred ccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeEEEEcchhHH
Q 024249 14 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSELV 83 (270)
Q Consensus 14 i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~i~i~~~~~~ 83 (270)
+.|.++++++|...+...+.. ..|.+++|+||||||||++++.+++++ +..+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 778889999999888876542 568899999999999999999999865 3568889986532
Q ss_pred Hh----------h------hchhhHHHHHHHHHH--HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc
Q 024249 84 QK----------Y------IGEGSRMVRELFVMA--REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD 145 (270)
Q Consensus 84 ~~----------~------~~~~~~~~~~~~~~a--~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 145 (270)
+. . .+.....++..|... ....+.|++|||+|.|.. +..+..+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~--------------q~~L~~l~~~~~ 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS--------------EKILQYFEKWIS 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC--------------THHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc--------------chHHHHHHhccc
Confidence 21 1 122344567777764 345688999999999851 234555554321
Q ss_pred CCcCCCCeEEEEEeCCCCCchh----hhcCCCCcc-eEEEeCCCCHHHHHHHHHHhhccCCCC-----------------
Q 024249 146 GFEASNKIKVLMATNRIDILDQ----ALLRPGRID-RKIEFPNPNEESRLDILKIHSRRMNLM----------------- 203 (270)
Q Consensus 146 ~~~~~~~~~vi~tt~~~~~l~~----~l~r~~r~~-~~i~~~~p~~~~r~~il~~~~~~~~~~----------------- 203 (270)
....++.+|+++|+.+..+. .+.+ |+. ..+.|++++.++..+|++..+......
T Consensus 159 --~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~ 234 (318)
T 3te6_A 159 --SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNI 234 (318)
T ss_dssp --CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC
T ss_pred --ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 13457889999999876543 3444 665 679999999999999998876543210
Q ss_pred ---------C-------CCC---HHHHHHH---cCCCCHHHHHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHH
Q 024249 204 ---------R-------GID---LKKIAEK---MNGASGAELKAVCTEAGMFALRE---------RRIHVTQEDFEMAVA 252 (270)
Q Consensus 204 ---------~-------~~~---~~~la~~---~~g~~~~dl~~l~~~a~~~a~~~---------~~~~i~~~d~~~a~~ 252 (270)
. .++ +..+|.. ..| ..+-.-.+|++|+..|.++ +...|+.+.+++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~ 313 (318)
T 3te6_A 235 REGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFS 313 (318)
T ss_dssp --------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHH
T ss_pred cccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHH
Confidence 0 122 3344543 334 3344447888888888653 235677777777777
Q ss_pred HHh
Q 024249 253 KVM 255 (270)
Q Consensus 253 ~~~ 255 (270)
.++
T Consensus 314 ~~~ 316 (318)
T 3te6_A 314 EAI 316 (318)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 61
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=4.9e-17 Score=141.12 Aligned_cols=195 Identities=21% Similarity=0.261 Sum_probs=134.4
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-----CeEE
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFI 75 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-----~~~i 75 (270)
.|+++++|.+|++++|.++.++.+..++... ...+++|+||+|+|||++++++++... ..++
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~ 80 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFL 80 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence 3678899999999999999999999887642 233599999999999999999998742 3467
Q ss_pred EEcchhHHHhhhchhhHHHHHHHHHH-H-hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCe
Q 024249 76 RVSGSELVQKYIGEGSRMVRELFVMA-R-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 153 (270)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~~~a-~-~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 153 (270)
.+++.+.... ......+....... . ...+.+|+|||+|.+. ......+..+++.. ..++
T Consensus 81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~L~~~le~~-----~~~~ 141 (327)
T 1iqp_A 81 ELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT------------QDAQQALRRTMEMF-----SSNV 141 (327)
T ss_dssp EEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC------------HHHHHHHHHHHHHT-----TTTE
T ss_pred EeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC------------HHHHHHHHHHHHhc-----CCCC
Confidence 7776553221 11111122211100 1 1457899999998762 23445566666543 3467
Q ss_pred EEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q 024249 154 KVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAG 231 (270)
Q Consensus 154 ~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~~a~ 231 (270)
.+|++|+.+..+.+.+.+ |+. .+.+++++.++...+++..+..... .++..+..++..+.| +.+.+.++++.+.
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 788899998888888877 554 7899999999999999887664432 122335677777766 6666666666554
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=4.4e-17 Score=141.16 Aligned_cols=206 Identities=18% Similarity=0.204 Sum_probs=142.4
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEEE
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR 76 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~ 76 (270)
|+++++|.+|++++|.+..++.+.+.+... ..+. ++|+||+|+|||+++++++... +..++.
T Consensus 11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDG------------NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHSC------------CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred HHHhcCCCCHHHHHCCHHHHHHHHHHHHcC------------CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 567888999999999999999999887642 2233 9999999999999999999874 345677
Q ss_pred EcchhHHHhhhchhhHHHHHHHHHHH-------hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcC
Q 024249 77 VSGSELVQKYIGEGSRMVRELFVMAR-------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA 149 (270)
Q Consensus 77 i~~~~~~~~~~~~~~~~~~~~~~~a~-------~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 149 (270)
+++.+.. ....++..+.... ...+.+|+|||+|.+.. .....+..+++..
T Consensus 78 ~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~----- 134 (323)
T 1sxj_B 78 LNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------GAQQALRRTMELY----- 134 (323)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------HHHHTTHHHHHHT-----
T ss_pred ecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------HHHHHHHHHHhcc-----
Confidence 7765421 1223444444333 23488999999988632 2344455555543
Q ss_pred CCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHH
Q 024249 150 SNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCT 228 (270)
Q Consensus 150 ~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~ 228 (270)
..+..+|++|+.+..+.+.+.+ |+. .+.+++|+.++..++++..+..... ..+..+..+++.+.| +.+.+..+++
T Consensus 135 ~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~ 210 (323)
T 1sxj_B 135 SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQ 210 (323)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3467788899998888888877 543 7999999999999999887654322 122335678888866 5555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHH
Q 024249 229 EAGMFALRERRIHVTQEDFEMAVA 252 (270)
Q Consensus 229 ~a~~~a~~~~~~~i~~~d~~~a~~ 252 (270)
.+... ...++.+++..++.
T Consensus 211 ~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 211 STVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp HHHHH-----HSSBCHHHHHHHHT
T ss_pred HHHhc-----CCCcCHHHHHHHHC
Confidence 55422 13577888776654
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.76 E-value=1.5e-17 Score=160.34 Aligned_cols=191 Identities=22% Similarity=0.287 Sum_probs=135.9
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCe
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCT 73 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~ 73 (270)
+..++..+++++|.++.++.+.+.+... .+.+++|+||||||||++++++|..+ ++.
T Consensus 172 ~~~~~~~ld~iiG~~~~i~~l~~~l~~~-------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~ 238 (758)
T 3pxi_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSRR-------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (758)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHCS-------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHhhCCCCCccCchHHHHHHHHHHhCC-------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe
Confidence 4556778899999999999999887652 45679999999999999999999875 778
Q ss_pred EEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCe
Q 024249 74 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 153 (270)
Q Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 153 (270)
++.+++ ...+.|+.+..++.+|..+....|.|||||. ..+ ... .++..+ ....+
T Consensus 239 ~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~--------------~~~--~~~---~L~~~l----~~~~v 292 (758)
T 3pxi_A 239 VMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFIDA--------------AID--ASN---ILKPSL----ARGEL 292 (758)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEECC---------------------------CCCT----TSSSC
T ss_pred EEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEcC--------------chh--HHH---HHHHHH----hcCCE
Confidence 887777 4556778888899999999999999999991 000 111 111122 35578
Q ss_pred EEEEEeCCCC-----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCC-----HHHHHHHc-----CCC
Q 024249 154 KVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID-----LKKIAEKM-----NGA 218 (270)
Q Consensus 154 ~vi~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-----~~~la~~~-----~g~ 218 (270)
.+|++||... .+++++.+ || ..+.++.|+.+++.+|++.+...+....+++ +..++..+ .++
T Consensus 293 ~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~ 369 (758)
T 3pxi_A 293 QCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (758)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred EEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCc
Confidence 8999999888 68999998 89 5699999999999999998876643322222 33444433 466
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 024249 219 SGAELKAVCTEAGMFALR 236 (270)
Q Consensus 219 ~~~dl~~l~~~a~~~a~~ 236 (270)
.+.....++.+|+..+..
T Consensus 370 ~p~~ai~ll~~a~~~~~~ 387 (758)
T 3pxi_A 370 LPDKAIDLIDEAGSKVRL 387 (758)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 778888888888765543
No 64
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.75 E-value=1.7e-17 Score=143.61 Aligned_cols=209 Identities=22% Similarity=0.239 Sum_probs=137.3
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEE
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFI 75 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i 75 (270)
.|+++++|.+|++++|.+..++.+.+.+... ...+++|+||+|+|||++++++++.. +..++
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTT-------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCC-------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 4789999999999999999999888776541 22349999999999999999999875 33467
Q ss_pred EEcchhHHHhhhchhhHHHHHHHHHH-H-hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCe
Q 024249 76 RVSGSELVQKYIGEGSRMVRELFVMA-R-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 153 (270)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~~~a-~-~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 153 (270)
.+++.+..+ .......+....... . ...+.+|+|||+|.+.. .... .++..++. ....+
T Consensus 73 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~---~L~~~le~--~~~~~ 133 (319)
T 2chq_A 73 EMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQA---ALRRTMEM--YSKSC 133 (319)
T ss_dssp EEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHH---TTGGGTSS--SSSSE
T ss_pred EEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHH---HHHHHHHh--cCCCC
Confidence 777665321 111111222211000 1 14578999999988632 1222 23333332 23467
Q ss_pred EEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024249 154 KVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGM 232 (270)
Q Consensus 154 ~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 232 (270)
.+|++|+.+..+.+.+.+ |+. .+.+++|+.++..+++...+...... .+..+..++..+.| +.+.+..+++.+..
T Consensus 134 ~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA 209 (319)
T ss_dssp EEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred eEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 889999999888888887 554 79999999999999998887654331 22235566766655 55555566655443
Q ss_pred HHHHhcCCCCCHHHHHHH
Q 024249 233 FALRERRIHVTQEDFEMA 250 (270)
Q Consensus 233 ~a~~~~~~~i~~~d~~~a 250 (270)
. ...++.+++..+
T Consensus 210 ~-----~~~i~~~~v~~~ 222 (319)
T 2chq_A 210 I-----GEVVDADTIYQI 222 (319)
T ss_dssp S-----SSCBCHHHHHHH
T ss_pred c-----CCCCCHHHHHHH
Confidence 1 235666666544
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.75 E-value=7.6e-18 Score=164.36 Aligned_cols=204 Identities=19% Similarity=0.272 Sum_probs=134.3
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCeE
Q 024249 5 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTF 74 (270)
Q Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~~ 74 (270)
..++..+++++|.++.++.+.+.+.. ..+.+++|+||||||||++++++|... +..+
T Consensus 163 ~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 229 (854)
T 1qvr_A 163 LAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229 (854)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred HHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeE
Confidence 34567889999999999998887754 235678999999999999999999875 7889
Q ss_pred EEEcchhHH--HhhhchhhHHHHHHHHHHHhc-CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCC
Q 024249 75 IRVSGSELV--QKYIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 151 (270)
Q Consensus 75 i~i~~~~~~--~~~~~~~~~~~~~~~~~a~~~-~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 151 (270)
+.+++..+. ..+.+.....++.+|..+... .|.||||||+|.+.+.... .........+..++. ..
T Consensus 230 ~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~----~g~~~~~~~L~~~l~-------~~ 298 (854)
T 1qvr_A 230 VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA----EGAVDAGNMLKPALA-------RG 298 (854)
T ss_dssp EEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH-------TT
T ss_pred EEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc----cchHHHHHHHHHHHh-------CC
Confidence 999988876 456777788899999988775 7899999999999765421 111122233333332 34
Q ss_pred CeEEEEEeCCCC----CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-----CCCCHHHHHHHc-----CC
Q 024249 152 KIKVLMATNRID----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-----RGIDLKKIAEKM-----NG 217 (270)
Q Consensus 152 ~~~vi~tt~~~~----~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~-----~g 217 (270)
.+.+|++|+..+ .+++++.+ ||.. +.++.|+.+++.+|++.+....... .+..+..++..+ ..
T Consensus 299 ~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~ 375 (854)
T 1qvr_A 299 ELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITER 375 (854)
T ss_dssp CCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSS
T ss_pred CeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccc
Confidence 677888888654 36788888 8875 9999999999999998776543211 112234444443 45
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 024249 218 ASGAELKAVCTEAGMFAL 235 (270)
Q Consensus 218 ~~~~dl~~l~~~a~~~a~ 235 (270)
|.+.....++.+|+..+.
T Consensus 376 ~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 376 RLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp CTHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHH
Confidence 678888888888876553
No 66
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.74 E-value=6e-18 Score=134.75 Aligned_cols=156 Identities=21% Similarity=0.359 Sum_probs=111.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCe
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCT 73 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----------~~~ 73 (270)
+++++..|+++.|.++.++.+.+.+.. ..+.+++|+||+|||||+++++++... +.+
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~ 80 (187)
T 2p65_A 14 ALARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRK 80 (187)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCE
T ss_pred HHHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCe
Confidence 345567899999999999998888754 245779999999999999999999865 778
Q ss_pred EEEEcchhHHHh--hhchhhHHHHHHHHHHHhc-CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCC
Q 024249 74 FIRVSGSELVQK--YIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 150 (270)
Q Consensus 74 ~i~i~~~~~~~~--~~~~~~~~~~~~~~~a~~~-~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 150 (270)
++.+++..+... +.+.....+..++..+... .|.+|+|||+|.+.+.+.. ..........+..+++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~~~~~~l~~~~~-------~ 150 (187)
T 2p65_A 81 LVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV---AEGALDAGNILKPMLA-------R 150 (187)
T ss_dssp EEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS---CTTSCCTHHHHHHHHH-------T
T ss_pred EEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc---cccchHHHHHHHHHHh-------c
Confidence 888887776532 3344445566777666554 7889999999998755421 1111122333333332 3
Q ss_pred CCeEEEEEeCCCC-----CchhhhcCCCCcceEEEeCCCC
Q 024249 151 NKIKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPN 185 (270)
Q Consensus 151 ~~~~vi~tt~~~~-----~l~~~l~r~~r~~~~i~~~~p~ 185 (270)
..+.+|++|+... .+++.+.+ ||.. +.++.|+
T Consensus 151 ~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 151 GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 4677889988765 57888888 8874 8888885
No 67
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.74 E-value=6.2e-17 Score=143.15 Aligned_cols=207 Identities=17% Similarity=0.235 Sum_probs=143.0
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe--------
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 73 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~-------- 73 (270)
++++++|.+|++++|.++.++.+...+... ..+..++|+||+|+|||++++++++...+.
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 467889999999999999999999888642 234578999999999999999999866431
Q ss_pred ----------------EEEEcchhHHHhhhchhhHHHHHHHHHHH----hcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 74 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 74 ----------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
++.+++.. ......++.++..+. ...+.||+|||+|.+. ...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------~~~ 135 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHS 135 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------HHH
T ss_pred cccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------HHH
Confidence 12222111 011223555555543 2357899999998752 233
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHH
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 212 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la 212 (270)
...+...++. ....+.+|++|+++..+.+.+.+ |+ ..+.+++|+.++..++++..+...... .+..+..++
T Consensus 136 ~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~ 207 (373)
T 1jr3_A 136 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 (373)
T ss_dssp HHHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4445555443 23468888899988888888877 54 678999999999999998876543321 222256788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 024249 213 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 251 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 251 (270)
+.+.| +.+++..+++.+...+ ...++.++++.++
T Consensus 208 ~~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 208 RAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 88876 7888888888775432 2457777776553
No 68
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.72 E-value=6.7e-17 Score=139.62 Aligned_cols=207 Identities=20% Similarity=0.275 Sum_probs=134.2
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHH----
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ---- 84 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~---- 84 (270)
+++.|.+..++.+...+......-. . .-.+...++|+||||||||++++++++.. +.+++.+++..+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---C-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 5789999999999988876421000 0 01233579999999999999999999875 45688888876432
Q ss_pred -hhhchh----hHHHHHHHHHH-HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc------CCCC
Q 024249 85 -KYIGEG----SRMVRELFVMA-REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE------ASNK 152 (270)
Q Consensus 85 -~~~~~~----~~~~~~~~~~a-~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~------~~~~ 152 (270)
...+.. .......+..+ .....++|||||+|.+ ++..+..+..+++.-.-.. .-.+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l------------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA------------HPDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS------------CHHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc------------CHHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 111110 00000122233 3344589999999875 2456667777776532110 0125
Q ss_pred eEEEEEeCC--------------------------CCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCC-----
Q 024249 153 IKVLMATNR--------------------------IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----- 201 (270)
Q Consensus 153 ~~vi~tt~~--------------------------~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~----- 201 (270)
..+|+|||. ...+++.+.+ ||+..+.+++|+.+++..|++.++....
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 668999997 3345566665 9999999999999999999988765421
Q ss_pred --C---CCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHH
Q 024249 202 --L---MRGIDLKKIAEKMN--GASGAELKAVCTEAGMFALR 236 (270)
Q Consensus 202 --~---~~~~~~~~la~~~~--g~~~~dl~~l~~~a~~~a~~ 236 (270)
. ..+..+..++...- ..+.++|..+++++...+..
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHH
Confidence 1 11222455666544 56889999999988776543
No 69
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=1.6e-16 Score=141.19 Aligned_cols=238 Identities=21% Similarity=0.288 Sum_probs=141.1
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHH-----------------hcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeE
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFE-----------------SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF 74 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~-----------------~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~ 74 (270)
+.|+|++..++.|...+..++.+..... .-...++.+++|+||||||||++++++|...+.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4689999999999988854433222100 01123567899999999999999999999999999
Q ss_pred EEEcchhHHH-hhhchh-hHHHHHHHHHH----HhcCCeEEEEcCCCcccCcccCCCCCCCC---hHHHHHHHHHHHhhc
Q 024249 75 IRVSGSELVQ-KYIGEG-SRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGD---SEVQRTMLELLNQLD 145 (270)
Q Consensus 75 i~i~~~~~~~-~~~~~~-~~~~~~~~~~a----~~~~p~il~lDeid~l~~~~~~~~~~~~~---~~~~~~l~~~l~~l~ 145 (270)
+.+++..+.. .+.+.. ...+...+..+ ....+.+|||||+|.+...+... ....+ ...+..+..+++...
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~-~~~~~~~~~~~~~~Ll~~le~~~ 179 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENR-SITRDVSGEGVQQALLKIVEGSL 179 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------CHHHHHHHHHHHHCCE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCC-ceecccchHHHHHHHHHHhhccc
Confidence 9999887642 233332 33344444432 13367899999999987654221 11111 125556666665310
Q ss_pred -CC---------------cCCCCeEEEEEeCCCCCch------------------------------------------h
Q 024249 146 -GF---------------EASNKIKVLMATNRIDILD------------------------------------------Q 167 (270)
Q Consensus 146 -~~---------------~~~~~~~vi~tt~~~~~l~------------------------------------------~ 167 (270)
.+ ....++.+|+++| .+.++ +
T Consensus 180 ~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p 258 (376)
T 1um8_A 180 VNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 258 (376)
T ss_dssp EC---------------CEECTTCEEEEEEC-CTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCH
T ss_pred eecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCCh
Confidence 00 0113456777776 23232 3
Q ss_pred hhcCCCCcceEEEeCCCCHHHHHHHHHH----hhc----c---CCC---CCCCCHHHHHHHcC--CCCHHHHHHHHHHHH
Q 024249 168 ALLRPGRIDRKIEFPNPNEESRLDILKI----HSR----R---MNL---MRGIDLKKIAEKMN--GASGAELKAVCTEAG 231 (270)
Q Consensus 168 ~l~r~~r~~~~i~~~~p~~~~r~~il~~----~~~----~---~~~---~~~~~~~~la~~~~--g~~~~dl~~l~~~a~ 231 (270)
.+.. |++..+.+++++.++...|+.. +.. . ... ..+.-+..++.... ....+.+..+++++.
T Consensus 259 ~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~ 336 (376)
T 1um8_A 259 ELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFC 336 (376)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHH
T ss_pred HHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 3333 7778899999999999998862 111 1 011 11112455665532 357899999999988
Q ss_pred HHHHHhc------CCCCCHHHHHHHHHH
Q 024249 232 MFALRER------RIHVTQEDFEMAVAK 253 (270)
Q Consensus 232 ~~a~~~~------~~~i~~~d~~~a~~~ 253 (270)
..++.+. ...|+.++++.+...
T Consensus 337 ~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 337 LDIMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred HHHHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 8766542 236888888765443
No 70
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.69 E-value=7.2e-17 Score=147.82 Aligned_cols=214 Identities=16% Similarity=0.127 Sum_probs=131.5
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC--CeEEEEcch-----hHHH
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGS-----ELVQ 84 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~~~i~i~~~-----~~~~ 84 (270)
..++|.++.++.+...+.. +.+++|+||||||||+++++++...+ .++..+.+. ++.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 3578888888777655543 46899999999999999999999774 345555443 2222
Q ss_pred hhhchhhHHHHHHHHHHHhc---CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc----CC-cCCCCeEEE
Q 024249 85 KYIGEGSRMVRELFVMAREH---APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD----GF-EASNKIKVL 156 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~---~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~----~~-~~~~~~~vi 156 (270)
...+.... -...|..+... .++||||||++.+ ++..+..+.+.+++-. +. ...+..++|
T Consensus 87 ~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 87 PLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKA------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred cccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhh------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 11111000 01112111111 4679999998753 3456666777775321 11 111223468
Q ss_pred EEeCCCCC---chhhhcCCCCcceEEEeCCCCH-HHHHHHHHHhhccCCCC----C---------------C--CC---H
Q 024249 157 MATNRIDI---LDQALLRPGRIDRKIEFPNPNE-ESRLDILKIHSRRMNLM----R---------------G--ID---L 208 (270)
Q Consensus 157 ~tt~~~~~---l~~~l~r~~r~~~~i~~~~p~~-~~r~~il~~~~~~~~~~----~---------------~--~~---~ 208 (270)
++||.+.. ..+++.+ ||...+.++.|+. +++.+|++......... . . ++ .
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~ 231 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVF 231 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHH
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHH
Confidence 88886433 3347777 8888999999987 77888887653211000 0 0 11 2
Q ss_pred HHHHHHc---------CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024249 209 KKIAEKM---------NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 256 (270)
Q Consensus 209 ~~la~~~---------~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 256 (270)
..++... .|.+++.+..+++.|...|...++..++++|+. ++..+++
T Consensus 232 e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 232 ELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp HHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSC
T ss_pred HHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhh
Confidence 2333332 488999999999999889988888889999988 5444443
No 71
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=1.4e-15 Score=133.34 Aligned_cols=210 Identities=20% Similarity=0.243 Sum_probs=133.7
Q ss_pred CccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-----eEE
Q 024249 1 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-----TFI 75 (270)
Q Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~-----~~i 75 (270)
.|+++++|.+|+++.|.+..++.|...+..- ..+ +++|+|||||||||+++++++...+ .+.
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g------------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEG------------KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT------------CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhcC------------CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 3788999999999999999999888877641 122 3999999999999999999987532 345
Q ss_pred EEcchhHHHhhhchhhHHHHHHHHHHH------hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcC
Q 024249 76 RVSGSELVQKYIGEGSRMVRELFVMAR------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA 149 (270)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~~~a~------~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 149 (270)
.++..+.. ....++..+.... ...+.|+++||+|.+. ...+..+...++..
T Consensus 81 ~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~------------~~~~~~L~~~le~~----- 137 (340)
T 1sxj_C 81 ELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT------------NAAQNALRRVIERY----- 137 (340)
T ss_dssp EECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC------------HHHHHHHHHHHHHT-----
T ss_pred EEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC------------HHHHHHHHHHHhcC-----
Confidence 55554311 1122232232222 1247899999998762 23345566666553
Q ss_pred CCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHcCCCCHHHHHHHHH
Q 024249 150 SNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCT 228 (270)
Q Consensus 150 ~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~~~~dl~~l~~ 228 (270)
.....+|++||.+..+.+.+.+ |+. .+.+++++.++..+.+...+..... ..+.....++..+.| ..+.+..+++
T Consensus 138 ~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~ 213 (340)
T 1sxj_C 138 TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQ 213 (340)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTT
T ss_pred CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 2456678889998888888888 553 6889999999888888877643222 122234566777655 4444444444
Q ss_pred HHHHHHHHhcCCCCCHHHHHHH
Q 024249 229 EAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 229 ~a~~~a~~~~~~~i~~~d~~~a 250 (270)
.+...+...+...++.+++..+
T Consensus 214 ~~~~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 214 SCKATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp TTTTTTCSSSCCCBCHHHHHHH
T ss_pred HHHHhcCCcccccccHHHHHHH
Confidence 4332221111124666666543
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=9.5e-16 Score=147.86 Aligned_cols=199 Identities=22% Similarity=0.298 Sum_probs=134.2
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCC---CC-ceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHH
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIA---QP-KGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 84 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~---~~-~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~ 84 (270)
++++|.+..++.+.+.+..... +.. .| ..++|+||||||||+++++++... +.++++++++.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA--------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT--------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHHc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 5689999999999988876421 111 22 369999999999999999999875 67899999998766
Q ss_pred hhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCC------cCCCCeEEEEE
Q 024249 85 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------EASNKIKVLMA 158 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~------~~~~~~~vi~t 158 (270)
..... ...+........+++|||||+|.+ .+.....+..+++.-.-. ....++.+|+|
T Consensus 563 ~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 563 KHSTS----GGQLTEKVRRKPYSVVLLDAIEKA------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGGS------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ccccc----cchhhHHHHhCCCeEEEEeCcccc------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 54433 112223334456789999999874 345677777777762100 01235789999
Q ss_pred eCCCCC------------chhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCC-------CCCCCC---HHHHHHH--
Q 024249 159 TNRIDI------------LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN-------LMRGID---LKKIAEK-- 214 (270)
Q Consensus 159 t~~~~~------------l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~-------~~~~~~---~~~la~~-- 214 (270)
||.... +.+.+.. ||+..+.+++|+.+++..|++.++..+. ..-.++ +..++..
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 996544 4556665 9999999999999999999987754421 111122 3445443
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 024249 215 MNGASGAELKAVCTEAGMFALR 236 (270)
Q Consensus 215 ~~g~~~~dl~~l~~~a~~~a~~ 236 (270)
...+..++|+.+++++...++.
T Consensus 705 ~~~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 705 DLEYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp CTTTTTTTHHHHHHHHTHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH
Confidence 2346778999988887665543
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=3.9e-15 Score=143.61 Aligned_cols=200 Identities=19% Similarity=0.283 Sum_probs=133.6
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCC----CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh--
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIA----QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-- 85 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~----~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~-- 85 (270)
++++|.++.++.+...+.... .|+. +...++|+||||||||+++++++...+.+++.++++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~--------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH--------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 357888888888887765421 1332 33479999999999999999999999999999999876432
Q ss_pred ----------hhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc------C
Q 024249 86 ----------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE------A 149 (270)
Q Consensus 86 ----------~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~------~ 149 (270)
+.|.... ..+........++||||||+|.+ .+.....+.++++.-.-.. .
T Consensus 530 ~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~------------~~~~~~~Ll~~le~~~~~~~~g~~~~ 595 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA------------HPDVFNILLQVMDNGTLTDNNGRKAD 595 (758)
T ss_dssp CSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS------------CHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred HhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc------------CHHHHHHHHHHhcCcEEEcCCCCEEe
Confidence 2221111 11233334456799999999874 2456666777776421000 0
Q ss_pred CCCeEEEEEeCCCC-------------------------CchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCC---
Q 024249 150 SNKIKVLMATNRID-------------------------ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN--- 201 (270)
Q Consensus 150 ~~~~~vi~tt~~~~-------------------------~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~--- 201 (270)
-.++.+|+|||... .+.+.+.+ ||+..+.|++|+.+++..|++.++....
T Consensus 596 ~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 596 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp CTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 13577899998743 34556666 9999999999999999999988765321
Q ss_pred ----C---CCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Q 024249 202 ----L---MRGIDLKKIAEKM--NGASGAELKAVCTEAGMFAL 235 (270)
Q Consensus 202 ----~---~~~~~~~~la~~~--~g~~~~dl~~l~~~a~~~a~ 235 (270)
. ..+.-+..++... ..+..+++..+++++...++
T Consensus 674 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 674 DQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp HHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHH
T ss_pred HHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHH
Confidence 0 1112244556543 34568899998888776544
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=3.9e-14 Score=126.70 Aligned_cols=230 Identities=15% Similarity=0.148 Sum_probs=145.3
Q ss_pred CCCcccccCcHHHHHHHHHHh-hccccChHHHHhcCCCCCceEEE--EcCCCchHHHHHHHHHHhc---------CCeEE
Q 024249 8 DSTYDMIGGLDQQIKEIKEVI-ELPIKHPELFESLGIAQPKGVLL--YGPPGTGKTLLARAVAHHT---------DCTFI 75 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l-~~~l~~~~~~~~~~~~~~~~ilL--~Gp~GtGKTtl~~~ia~~~---------~~~~i 75 (270)
...+++++|.+++++.|.+.+ ......+ -..+..++| +||+|+|||++++.+++.. +..++
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 344578999999999999988 5432210 024567889 9999999999999999754 45677
Q ss_pred EEcchh------HHHhh---h-------ch-hhHHHHHHHHHH-HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHH
Q 024249 76 RVSGSE------LVQKY---I-------GE-GSRMVRELFVMA-REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 137 (270)
Q Consensus 76 ~i~~~~------~~~~~---~-------~~-~~~~~~~~~~~a-~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l 137 (270)
++++.. +.... . +. .......+.... ....|.+|+|||+|.+.... ..+......+
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~------~~~~~~l~~l 164 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP------RIAAEDLYTL 164 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT------TSCHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc------CcchHHHHHH
Confidence 887632 11110 0 00 011122222221 13568899999999875321 0122333333
Q ss_pred HHHHHhhcCCcCC--CCeEEEEEeCCCCC---ch---hhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCC---CCCC
Q 024249 138 LELLNQLDGFEAS--NKIKVLMATNRIDI---LD---QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL---MRGI 206 (270)
Q Consensus 138 ~~~l~~l~~~~~~--~~~~vi~tt~~~~~---l~---~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~ 206 (270)
..++..+. ... .++.+|++|++++. ++ +.+.+ ++...+.+++++.++..++++..+..... ..+.
T Consensus 165 ~~~~~~~~--~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~ 240 (412)
T 1w5s_A 165 LRVHEEIP--SRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPR 240 (412)
T ss_dssp HTHHHHSC--CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHH
T ss_pred HHHHHhcc--cCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChH
Confidence 44444331 012 56888888886653 23 33444 45555999999999999999876542211 1222
Q ss_pred CHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 024249 207 DLKKIAEKMN------GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 255 (270)
Q Consensus 207 ~~~~la~~~~------g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~ 255 (270)
....++..+. | .++.+..++..|...+...+...++.+++..++....
T Consensus 241 ~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 3566778887 6 7888889999888888777777889999988886653
No 75
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=103.56 Aligned_cols=76 Identities=83% Similarity=1.219 Sum_probs=71.8
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 024249 182 PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 182 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 257 (270)
|+|+.++|.+||+.++++.....++|+..||+.|+||||+||.++|++|++.|++++...|+.+||+.|+.++.+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999998888899999999999999999999999999999999999999999999999998764
No 76
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=104.79 Aligned_cols=77 Identities=81% Similarity=1.181 Sum_probs=72.5
Q ss_pred eCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 024249 181 FPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 181 ~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 257 (270)
-.+|+.++|.+||+.++++..+..++|+..||+.|+||||+||.++|++|++.|+++....|+.+||+.|+.++.+.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 46899999999999999998888899999999999999999999999999999999988999999999999998764
No 77
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.59 E-value=5.6e-15 Score=117.72 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=86.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----CCeEEEEcc
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSG 79 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----~~~~i~i~~ 79 (270)
++..+.+|++..+.....+...+.+.. ...++.+..+.+++|+||||||||||++++++.. +..+++++.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRV------FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHH------HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred chhhhCccccccCCCHHHHHHHHHHHH------HHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 356788999987643222222222222 1234456678999999999999999999999864 556667777
Q ss_pred hhHHHhhhchhhHH-HHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEE
Q 024249 80 SELVQKYIGEGSRM-VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 158 (270)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~t 158 (270)
.++........... ....+. ....|.+|+|||++.. +.++.....+.++++... ..+.++|+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~----------~~~~~~~~~l~~ll~~~~----~~~~~ii~t 139 (180)
T 3ec2_A 76 KDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSE----------RLSDWQRELISYIITYRY----NNLKSTIIT 139 (180)
T ss_dssp HHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSS----------CCCHHHHHHHHHHHHHHH----HTTCEEEEE
T ss_pred HHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCC----------cCCHHHHHHHHHHHHHHH----HcCCCEEEE
Confidence 66654332211100 011111 2237889999996532 456667777888887652 245678888
Q ss_pred eCCCCC
Q 024249 159 TNRIDI 164 (270)
Q Consensus 159 t~~~~~ 164 (270)
||.+..
T Consensus 140 sn~~~~ 145 (180)
T 3ec2_A 140 TNYSLQ 145 (180)
T ss_dssp CCCCSC
T ss_pred cCCChh
Confidence 887543
No 78
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.59 E-value=1e-14 Score=123.26 Aligned_cols=209 Identities=19% Similarity=0.219 Sum_probs=117.3
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC---CeEEEEcchhHHH
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSELVQ 84 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~---~~~i~i~~~~~~~ 84 (270)
+.+|++++|.++.++.+.+.+.... ..+..++|+||+|||||+++++++.... .+++.++|..+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp --------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred CcccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 3578999999999999888777642 2357799999999999999999998754 6899999887532
Q ss_pred hh-----hchhhHH-------HHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc--CC---
Q 024249 85 KY-----IGEGSRM-------VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD--GF--- 147 (270)
Q Consensus 85 ~~-----~~~~~~~-------~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~--- 147 (270)
.. +|..... ....+.. ..+.+|||||+|.+. ...+..+..+++.-. ..
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~------------~~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP------------MMVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSC------------HHHHHHHHHHHHHCEECCCCC-
T ss_pred hHHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcC------------HHHHHHHHHHHHhCCeecCCCc
Confidence 21 1110000 0011222 245799999998863 344566666666421 00
Q ss_pred -cCCCCeEEEEEeCCC-------CCchhhhcCCCCcc-eEEEeCCCCH--HHHHHHHHHhhcc----CCCC--CCCCHHH
Q 024249 148 -EASNKIKVLMATNRI-------DILDQALLRPGRID-RKIEFPNPNE--ESRLDILKIHSRR----MNLM--RGIDLKK 210 (270)
Q Consensus 148 -~~~~~~~vi~tt~~~-------~~l~~~l~r~~r~~-~~i~~~~p~~--~~r~~il~~~~~~----~~~~--~~~~~~~ 210 (270)
....++.+|+|||.. ..+.+.+.+ ||. ..+.+|+.+. ++...+++.++.. .... ..++-+.
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a 213 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA 213 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH
Confidence 012357789999873 124455554 563 3456665543 4444454444332 2221 1344433
Q ss_pred HH---HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 024249 211 IA---EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDF 247 (270)
Q Consensus 211 la---~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~ 247 (270)
+. ...-..+.+++.++++++...+ ....++.+|+
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 33 3221235678999998887655 2334554444
No 79
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=1.2e-15 Score=142.99 Aligned_cols=225 Identities=20% Similarity=0.191 Sum_probs=138.9
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEc----chhHHHhh-
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS----GSELVQKY- 86 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~----~~~~~~~~- 86 (270)
..|.|.+..++.+.-.+..- .+....+..+....++||+||||||||++|++++...+...+... +..+....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 36888888776664333321 000000012334448999999999999999999998765544321 11111110
Q ss_pred ----hchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc------CC--cCCCCeE
Q 024249 87 ----IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD------GF--EASNKIK 154 (270)
Q Consensus 87 ----~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~------~~--~~~~~~~ 154 (270)
.+... .....+..| ...+++|||+|.+. +..+..+.+.++.-. +. ....++.
T Consensus 373 ~~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 373 REKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMR------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SGGGTSSCS-EEECHHHHH---SSSEECCTTTTCCC------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred ecccccccc-ccCCeeEec---CCCcEEeehhhhCC------------HhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 00000 000112222 34699999998752 345566777776421 10 1123577
Q ss_pred EEEEeCCCC-------------CchhhhcCCCCcceE-EEeCCCCHHHHHHHHHHhhccCC-------------------
Q 024249 155 VLMATNRID-------------ILDQALLRPGRIDRK-IEFPNPNEESRLDILKIHSRRMN------------------- 201 (270)
Q Consensus 155 vi~tt~~~~-------------~l~~~l~r~~r~~~~-i~~~~p~~~~r~~il~~~~~~~~------------------- 201 (270)
||+|||... .+++++++ |||.. +..+.|+.+ ...|.+.......
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ 513 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAY 513 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHH
Confidence 999999876 78889988 99754 455677777 7777776554321
Q ss_pred -------CCCCCCHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 024249 202 -------LMRGIDLKKIAEK--------------MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 257 (270)
Q Consensus 202 -------~~~~~~~~~la~~--------------~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 257 (270)
..++...+.+... .-+.+++.+..+++.|...|..+.+..++.+|+.+|+.-+..+
T Consensus 514 ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 514 ARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 1112223334443 3478999999999999999988889999999999999876543
No 80
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.57 E-value=9.8e-15 Score=102.56 Aligned_cols=85 Identities=41% Similarity=0.604 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhccc-h
Q 024249 185 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN-M 263 (270)
Q Consensus 185 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~-~ 263 (270)
+.++|.+||+.++++.+...++|+..||+.|+||||+||.++|++|++.|+++....|+.+||+.|+.++.+....++ .
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~ 81 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSST 81 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccch
Confidence 567899999999999988889999999999999999999999999999999999999999999999999988765554 4
Q ss_pred hhhhhh
Q 024249 264 SLRKLW 269 (270)
Q Consensus 264 ~~~~~~ 269 (270)
..+..|
T Consensus 82 ~~y~~w 87 (88)
T 3vlf_B 82 SRYMQY 87 (88)
T ss_dssp ------
T ss_pred hHHhcc
Confidence 444456
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.56 E-value=4.1e-14 Score=133.13 Aligned_cols=221 Identities=22% Similarity=0.301 Sum_probs=138.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC---eEEEEcch
Q 024249 4 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---TFIRVSGS 80 (270)
Q Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~---~~i~i~~~ 80 (270)
.++++..|++++|.+..++.+...+.. +..++|+|||||||||++++|++.... +.+.+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 356788899999999988887766653 468999999999999999999986532 22222211
Q ss_pred hHHHh--------------hh------------------------------------------chhhHHHHHHHH-----
Q 024249 81 ELVQK--------------YI------------------------------------------GEGSRMVRELFV----- 99 (270)
Q Consensus 81 ~~~~~--------------~~------------------------------------------~~~~~~~~~~~~----- 99 (270)
..... .. .........+|.
T Consensus 98 ~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~ 177 (604)
T 3k1j_A 98 PEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD 177 (604)
T ss_dssp TTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC
T ss_pred cccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec
Confidence 11000 00 000000111111
Q ss_pred ------------------HHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcC---------------
Q 024249 100 ------------------MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--------------- 146 (270)
Q Consensus 100 ------------------~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~--------------- 146 (270)
......+.+|||||++.+ ++..+..+...|+.-.-
T Consensus 178 ~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~ 245 (604)
T 3k1j_A 178 PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL------------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVR 245 (604)
T ss_dssp CC----CCCCGGGGEECCHHHHTTTSEEEETTGGGS------------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCB
T ss_pred hhhcCCccccccccccCceeeecCCCEEEEechhhC------------CHHHHHHHHHHHHcCcEEecccccccccccCC
Confidence 111235669999998875 24566677777764210
Q ss_pred -CcCCCCeEEEEEeCCC--CCchhhhcCCCCcc---eEEEeCC---CCHHHHHHHHHHhhccCC---CCCCCC---HHHH
Q 024249 147 -FEASNKIKVLMATNRI--DILDQALLRPGRID---RKIEFPN---PNEESRLDILKIHSRRMN---LMRGID---LKKI 211 (270)
Q Consensus 147 -~~~~~~~~vi~tt~~~--~~l~~~l~r~~r~~---~~i~~~~---p~~~~r~~il~~~~~~~~---~~~~~~---~~~l 211 (270)
......+.||++||.. +.+++.+.+ ||. ..+.++. -+.+....+++.+.+... ....++ +..+
T Consensus 246 ~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~L 323 (604)
T 3k1j_A 246 TEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEI 323 (604)
T ss_dssp CSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHH
T ss_pred CCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHH
Confidence 0011256799999975 568888888 775 4556542 245556666655443221 112233 3344
Q ss_pred HHH---cCCC------CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 024249 212 AEK---MNGA------SGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAK 253 (270)
Q Consensus 212 a~~---~~g~------~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 253 (270)
.+. ..|. +.+++.++++.|...|..+....++.+|++.|+..
T Consensus 324 i~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 324 VREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 432 2563 78999999999998887788889999999999965
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=2.4e-14 Score=139.71 Aligned_cols=202 Identities=22% Similarity=0.313 Sum_probs=130.9
Q ss_pred cccccCcHHHHHHHHHHhhccccChHHHHhcCC----CCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHH
Q 024249 11 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGI----AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV 83 (270)
Q Consensus 11 ~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~----~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~ 83 (270)
+++|+|.++.++.+...+..... |+ .+...++|+||||||||+++++++... +.+++.++++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~--------g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARA--------GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGG--------GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHHhc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 35789999999999888865321 11 122579999999999999999999876 6789999987653
Q ss_pred Hh------------hhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc---
Q 024249 84 QK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE--- 148 (270)
Q Consensus 84 ~~------------~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--- 148 (270)
.. ++|... ...+........+++|||||+|.+ ++.....+..+++.-.-..
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l------------~~~~~~~Ll~~l~~~~~~~~~g 694 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA------------HPDVFNILLQILDDGRLTDSHG 694 (854)
T ss_dssp SSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS------------CHHHHHHHHHHHTTTEECCSSS
T ss_pred chhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc------------CHHHHHHHHHHhccCceECCCC
Confidence 22 111111 122233334455689999999874 3455666666665421000
Q ss_pred ---CCCCeEEEEEeCCC--------------------------CCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhcc
Q 024249 149 ---ASNKIKVLMATNRI--------------------------DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR 199 (270)
Q Consensus 149 ---~~~~~~vi~tt~~~--------------------------~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~ 199 (270)
.-.++.||+|||.. ..+.+.+.. |++..+.+++|+.++...|++.++..
T Consensus 695 ~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 695 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred CEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 01256788999862 122334444 88888889999999999999877653
Q ss_pred CC-------CCCCCC---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHH
Q 024249 200 MN-------LMRGID---LKKIAEKMN--GASGAELKAVCTEAGMFALR 236 (270)
Q Consensus 200 ~~-------~~~~~~---~~~la~~~~--g~~~~dl~~l~~~a~~~a~~ 236 (270)
.. ....++ +..|+...- .++.++|+.+++++...++.
T Consensus 773 ~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~ 821 (854)
T 1qvr_A 773 LRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 821 (854)
T ss_dssp HHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHH
T ss_pred HHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 21 111122 455666554 57889999999988776654
No 83
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.53 E-value=1.4e-14 Score=123.05 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=85.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH---------Hh-----------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------QK----------------------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------~~----------------------- 85 (270)
+|.+.+|..+.|.||||||||||+++|++. +..+.+.+++.++. ..
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~ 107 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVS 107 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHH
Confidence 456788999999999999999999999984 34455555443210 00
Q ss_pred --------------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 86 --------------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 86 --------------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
++. .++++.+-.+++|...+|.+|++|| |+++.|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDE-----------Pts~LD~ 176 (275)
T 3gfo_A 108 FGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDE-----------PTAGLDP 176 (275)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEEC-----------TTTTCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCCH
Confidence 000 2234456666778889999999999 9999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. ...+.+||++||+++.+..
T Consensus 177 ~~~~~i~~~l~~l~---~~~g~tvi~vtHdl~~~~~ 209 (275)
T 3gfo_A 177 MGVSEIMKLLVEMQ---KELGITIIIATHDIDIVPL 209 (275)
T ss_dssp HHHHHHHHHHHHHH---HHHCCEEEEEESCCSSGGG
T ss_pred HHHHHHHHHHHHHH---hhCCCEEEEEecCHHHHHH
Confidence 99999999998873 1237899999999998765
No 84
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.51 E-value=2.3e-14 Score=123.77 Aligned_cols=195 Identities=22% Similarity=0.289 Sum_probs=114.5
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHHhh--
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKY-- 86 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~~~-- 86 (270)
++++|.....+.+.+.+.... ..+..++|+||||||||+++++++... +.+++.++|..+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 368899999999988887642 346779999999999999999999854 5788999887653211
Q ss_pred ---hchh----h---HHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcC--C----cCC
Q 024249 87 ---IGEG----S---RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--F----EAS 150 (270)
Q Consensus 87 ---~~~~----~---~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~----~~~ 150 (270)
+|.. . ......|..+ .+.+|||||++.+. ...+..+..+++...- . ...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~------------~~~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDIS------------PLMQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCC------------HHHHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCC------------HHHHHHHHHHHhcCEeeecCCccccc
Confidence 1110 0 0111223333 34699999998763 3455566666664320 0 012
Q ss_pred CCeEEEEEeCCC-C------CchhhhcCCCCc-ceEEEeCCCC--HHHHHHHHHHhhccC----CC-CCCCCH---HHHH
Q 024249 151 NKIKVLMATNRI-D------ILDQALLRPGRI-DRKIEFPNPN--EESRLDILKIHSRRM----NL-MRGIDL---KKIA 212 (270)
Q Consensus 151 ~~~~vi~tt~~~-~------~l~~~l~r~~r~-~~~i~~~~p~--~~~r~~il~~~~~~~----~~-~~~~~~---~~la 212 (270)
.++.||++||.. . .+.+.+.. || ...+.+|+.. .++...+++.++... .. ...++- ..+.
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~ 213 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLI 213 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHH
Confidence 357899999974 0 11222222 33 2335555544 344455665554332 11 122333 3344
Q ss_pred HHcCCCCHHHHHHHHHHHHHHH
Q 024249 213 EKMNGASGAELKAVCTEAGMFA 234 (270)
Q Consensus 213 ~~~~g~~~~dl~~l~~~a~~~a 234 (270)
...-.-+.+++.++++++...+
T Consensus 214 ~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 214 HYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HCCCSSHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHhC
Confidence 4431236688999999887654
No 85
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.51 E-value=1.3e-14 Score=122.92 Aligned_cols=114 Identities=25% Similarity=0.310 Sum_probs=85.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.+|..+.|.||||||||||+++|++. +..+.+.+++.++..
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGR 110 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGG
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhh
Confidence 456788999999999999999999999984 345556555432100
Q ss_pred --------------------------hhhc--hhhHHHHHHHHHHHhc------CCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 --------------------------KYIG--EGSRMVRELFVMAREH------APSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 --------------------------~~~~--~~~~~~~~~~~~a~~~------~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+. .++++.+-.+++|... +|.+|++|| |+++.|
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDE-----------Pts~LD 179 (266)
T 4g1u_C 111 APYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDE-----------PTSALD 179 (266)
T ss_dssp TTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECC-----------CCSSCC
T ss_pred hhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC-----------ccccCC
Confidence 0000 2334556777778888 999999999 999999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+..+.+++..+. .+.+.+||++||+.+.+..
T Consensus 180 ~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~~~~~ 213 (266)
T 4g1u_C 180 LYHQQHTLRLLRQLT---RQEPLAVCCVLHDLNLAAL 213 (266)
T ss_dssp HHHHHHHHHHHHHHH---HHSSEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HcCCCEEEEEEcCHHHHHH
Confidence 999999999998873 3346899999999876654
No 86
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.51 E-value=3.4e-14 Score=98.78 Aligned_cols=79 Identities=32% Similarity=0.551 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhccchh
Q 024249 185 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMS 264 (270)
Q Consensus 185 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~~~ 264 (270)
+.++|.+||+.++++.+...++|+..+|+.|+||||+||.++|++|++.|+++....|+.+||+.|+.++.|+.+ ..++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~-~~l~ 80 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE-QEHE 80 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch-HHHH
Confidence 678999999999999888889999999999999999999999999999999988889999999999999988776 4443
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.50 E-value=1.8e-14 Score=146.45 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=106.1
Q ss_pred CCCcccccCcHHHHHHHHHHhhccccC----------hHHHHh------cC------------CCCCceEEEEcCCCchH
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIKH----------PELFES------LG------------IAQPKGVLLYGPPGTGK 59 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~~----------~~~~~~------~~------------~~~~~~ilL~Gp~GtGK 59 (270)
.+.|++|+|+++.++++.+.+.+++.+ ++.++. .| ++.++.++|+|||||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 478999999999999999999998844 555655 22 44566699999999999
Q ss_pred HHHHHHHHHhc---CCeEEEEcchh----HH--------Hhhhch----hhHHHHHHHHHHHhcCCeEEEEcCCCcccCc
Q 024249 60 TLLARAVAHHT---DCTFIRVSGSE----LV--------QKYIGE----GSRMVRELFVMAREHAPSIIFMDEIDSIGSA 120 (270)
Q Consensus 60 Ttl~~~ia~~~---~~~~i~i~~~~----~~--------~~~~~~----~~~~~~~~~~~a~~~~p~il~lDeid~l~~~ 120 (270)
|+|+++++.+. +.+.++++... +. .+++++ .++.++.++.+|+...|+++++|++|.|++.
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcc
Confidence 99999999754 44555555443 22 334445 7889999999999999999999999999998
Q ss_pred ccCCC-CCCCC-hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 121 RMESG-SGNGD-SEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 121 ~~~~~-~~~~~-~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
+...+ .+..+ ....+.+.++|.++++.....+++|| +||+.
T Consensus 1176 ~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1176 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 43111 11111 44556788888888765555677777 56553
No 88
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.49 E-value=1.8e-14 Score=126.47 Aligned_cols=114 Identities=25% Similarity=0.399 Sum_probs=87.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.+|..+.|.||||||||||+|+|++. +..+.+.+++.++..
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~ 127 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 127 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHH
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHH
Confidence 456889999999999999999999999984 345566655432100
Q ss_pred -------------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 -------------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 -------------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.++. .++++.+-.+++|...+|.+|++|| |+++.|+
T Consensus 128 ~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDE-----------PTs~LD~ 196 (366)
T 3tui_C 128 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQ-----------ATSALDP 196 (366)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEES-----------TTTTSCH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCccCCH
Confidence 0000 2344557777788889999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. .+.+.+||++||+++.+..
T Consensus 197 ~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 197 ATTRSILELLKDIN---RRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHHHHHHHH---HHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHH---HhCCCEEEEEecCHHHHHH
Confidence 99999999999883 3347899999999876654
No 89
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.48 E-value=2e-14 Score=126.97 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=86.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.++..+.|.||||||||||+|+|++. +..+.+.+++.++.
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~ 102 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL 102 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHH
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999999983 34455555443210
Q ss_pred -------------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 84 -------------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 84 -------------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
..++. .++++.+-.+++|...+|.+|++|| |+++.|...+..
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE-----------Pts~LD~~~~~~ 171 (381)
T 3rlf_A 103 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE-----------PLSNLDAALRVQ 171 (381)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES-----------TTTTSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CCcCCCHHHHHH
Confidence 00011 2345567778888899999999999 999999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+.+..+. ...+.++|++||+.+.+..
T Consensus 172 l~~~l~~l~---~~~g~tii~vTHd~~ea~~ 199 (381)
T 3rlf_A 172 MRIEISRLH---KRLGRTMIYVTHDQVEAMT 199 (381)
T ss_dssp HHHHHHHHH---HHHCCEEEEECSCHHHHHH
T ss_pred HHHHHHHHH---HhCCCEEEEEECCHHHHHH
Confidence 999988873 2337899999999876543
No 90
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.48 E-value=3.5e-14 Score=119.50 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=82.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------------------------------Hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------------------------------QK 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------------------------------~~ 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 114 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 114 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHH
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHH
Confidence 456789999999999999999999999984 33455555432110 00
Q ss_pred hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 86 YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 86 ~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
..+ ..+++.+-.+++|...+|.++++|| |+++.|+..+.
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE-----------Pts~LD~~~~~ 183 (256)
T 1vpl_A 115 FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE-----------PTSGLDVLNAR 183 (256)
T ss_dssp HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTCCHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CccccCHHHHH
Confidence 000 1223345556667888999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.+.+++..+. ..+.+||++||+++.+.
T Consensus 184 ~l~~~l~~l~----~~g~tiiivtHd~~~~~ 210 (256)
T 1vpl_A 184 EVRKILKQAS----QEGLTILVSSHNMLEVE 210 (256)
T ss_dssp HHHHHHHHHH----HTTCEEEEEECCHHHHT
T ss_pred HHHHHHHHHH----hCCCEEEEEcCCHHHHH
Confidence 9999998873 23688999999976554
No 91
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.48 E-value=4.6e-14 Score=119.19 Aligned_cols=113 Identities=22% Similarity=0.349 Sum_probs=82.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH---------H------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------Q------------------------ 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------~------------------------ 84 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++. .
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~ 123 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL 123 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHH
Confidence 456789999999999999999999999984 33455555442110 0
Q ss_pred -h--hhc------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 -K--YIG------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 -~--~~~------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
. ..+ ..+++.+..+++|...+|.+|++|| |+++.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDE-----------Pts~LD~ 192 (263)
T 2olj_A 124 APMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDE-----------PTSALDP 192 (263)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTSCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeC-----------CcccCCH
Confidence 0 000 1122334555667788999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. . .+.+||++||+++.+..
T Consensus 193 ~~~~~~~~~l~~l~---~-~g~tvi~vtHd~~~~~~ 224 (263)
T 2olj_A 193 EMVGEVLSVMKQLA---N-EGMTMVVVTHEMGFARE 224 (263)
T ss_dssp HHHHHHHHHHHHHH---H-TTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHHH---h-CCCEEEEEcCCHHHHHH
Confidence 99999999998873 2 37899999999776543
No 92
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.48 E-value=2.7e-14 Score=125.21 Aligned_cols=114 Identities=24% Similarity=0.314 Sum_probs=84.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.++..+.|.||||||||||+|+|++. +..+.+.+++.++.
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~ 103 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAY 103 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHH
Confidence 456789999999999999999999999983 34455555443210
Q ss_pred -----------------------------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 84 -----------------------------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 84 -----------------------------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
..++. .++++.+-.+++|...+|.+|++|| |+++.|+.
T Consensus 104 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE-----------Pts~LD~~ 172 (359)
T 3fvq_A 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE-----------PFSALDEQ 172 (359)
T ss_dssp TSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTSCHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHH
Confidence 00011 2345667778888999999999999 99999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+..+...+..+. ...+.++|++||+.+.+..
T Consensus 173 ~r~~l~~~l~~~~---~~~g~tvi~vTHd~~ea~~ 204 (359)
T 3fvq_A 173 LRRQIREDMIAAL---RANGKSAVFVSHDREEALQ 204 (359)
T ss_dssp HHHHHHHHHHHHH---HHTTCEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHHH---HhCCCEEEEEeCCHHHHHH
Confidence 9988887665542 3347899999999876543
No 93
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.47 E-value=5.6e-14 Score=116.07 Aligned_cols=110 Identities=22% Similarity=0.379 Sum_probs=79.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-----------Hhhhc------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV-----------QKYIG------------------ 88 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~-----------~~~~~------------------ 88 (270)
+|.+.+|..+.|.||||||||||+++|++. +..+.+.+++.++. ...++
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l 103 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENV 103 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHH
Confidence 456788999999999999999999999984 33455555432110 00000
Q ss_pred --------------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 89 --------------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 89 --------------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+++.+-.+++|...+|.++++|| |+++.|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE-----------Pt~~LD 172 (224)
T 2pcj_A 104 IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE-----------PTGNLD 172 (224)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEES-----------TTTTCC
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CCCCCC
Confidence 1122334555567778999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
+..+..+.+++..+. .+ +.+||++||+.+.
T Consensus 173 ~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 173 SANTKRVMDIFLKIN---EG-GTSIVMVTHEREL 202 (224)
T ss_dssp HHHHHHHHHHHHHHH---HT-TCEEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHH---HC-CCEEEEEcCCHHH
Confidence 999999999998873 23 6889999998654
No 94
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.47 E-value=5.6e-14 Score=116.89 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=81.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH-----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------------- 82 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------------- 82 (270)
+|.+.++..+.|.||||||||||+++|++. +..+.+.+++.++
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl 104 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENV 104 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHH
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHH
Confidence 456889999999999999999999999973 3344555443210
Q ss_pred -HH---------------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCC
Q 024249 83 -VQ---------------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126 (270)
Q Consensus 83 -~~---------------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~ 126 (270)
.. .++. .++++.+-.+++|...+|.+|++|| |+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDE-----------Pt 173 (235)
T 3tif_A 105 ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ-----------PT 173 (235)
T ss_dssp HHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------TT
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------Cc
Confidence 00 0000 1233456677778889999999999 89
Q ss_pred CCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 127 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 127 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
++.|+.....+.+++..+. ...+.+||++||+++
T Consensus 174 s~LD~~~~~~i~~~l~~l~---~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 174 WALDSKTGEKIMQLLKKLN---EEDGKTVVVVTHDIN 207 (235)
T ss_dssp TTSCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred ccCCHHHHHHHHHHHHHHH---HHcCCEEEEEcCCHH
Confidence 9999999999999998873 223789999999976
No 95
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.47 E-value=7.4e-14 Score=107.19 Aligned_cols=112 Identities=15% Similarity=0.257 Sum_probs=80.5
Q ss_pred cccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhchhhH
Q 024249 13 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSR 92 (270)
Q Consensus 13 ~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~~~~ 92 (270)
+++|.++.++++.+.+.... ..+..++|+||||||||+++++++.... +++.+++..+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 57899999999998887642 2456799999999999999999998877 89999998765443
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 93 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 93 ~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
....+..+ .+.+|||||+|.+. ...+..+..+++... ..++.+|+|||..
T Consensus 67 -~~~~~~~a---~~~~l~lDei~~l~------------~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKA---EGGVLYVGDIAQYS------------RNIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHT---TTSEEEEEECTTCC------------HHHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred -hhhHHHhC---CCCeEEEeChHHCC------------HHHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 33444443 35699999998763 344556667766542 3457788888753
No 96
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.46 E-value=2.7e-13 Score=104.28 Aligned_cols=111 Identities=16% Similarity=0.263 Sum_probs=78.5
Q ss_pred cccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHHhhhch
Q 024249 13 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGE 89 (270)
Q Consensus 13 ~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~~~~~~ 89 (270)
+++|....++.+.+.+.... ..+..++|+||||||||+++++++... +.+++ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 67899999999988887641 345679999999999999999999865 67888 988765433
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 90 GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 90 ~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
......+..+ ...+|||||+|.+. ...+..+..++.. ....+.+|+|||.
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l~------------~~~q~~Ll~~l~~-----~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHLT------------REQQYHLVQLQSQ-----EHRPFRLIGIGDT 115 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGSC------------HHHHHHHHHHHHS-----SSCSSCEEEEESS
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHCC------------HHHHHHHHHHHhh-----cCCCEEEEEECCc
Confidence 2233445544 44689999999863 3445566666632 2345678888886
No 97
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.44 E-value=1.4e-13 Score=120.86 Aligned_cols=113 Identities=20% Similarity=0.198 Sum_probs=84.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.++..+.|.||||||||||+|+|++- +..+.+.+++.++..
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 102 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRA 102 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSS
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence 456788999999999999999999999983 334555554322100
Q ss_pred --------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 85 --------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 85 --------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
.++. .++++.+-.+++|...+|.++++|| |.++.|...+..
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE-----------P~s~LD~~~r~~ 171 (359)
T 2yyz_A 103 RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE-----------PLSNLDANLRMI 171 (359)
T ss_dssp SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CcccCCHHHHHH
Confidence 0000 2334556777788899999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+.+++..+. ...+.++|++||+.+.+.
T Consensus 172 l~~~l~~l~---~~~g~tvi~vTHd~~~~~ 198 (359)
T 2yyz_A 172 MRAEIKHLQ---QELGITSVYVTHDQAEAM 198 (359)
T ss_dssp HHHHHHHHH---HHHCCEEEEEESCHHHHH
T ss_pred HHHHHHHHH---HhcCCEEEEEcCCHHHHH
Confidence 999988873 223688999999977654
No 98
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.44 E-value=1.4e-13 Score=120.73 Aligned_cols=114 Identities=20% Similarity=0.315 Sum_probs=83.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH------------------------------H---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV------------------------------Q--- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~------------------------------~--- 84 (270)
+|.+.++..+.|.||||||||||+|+|++. +..+.+.+++.++. .
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~ 114 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLRE 114 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 456788999999999999999999999984 33445554432110 0
Q ss_pred --------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 85 --------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 85 --------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
.++. .++++.+-.+++|...+|.+|++|| |.++.|...+..
T Consensus 115 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE-----------P~s~LD~~~r~~ 183 (355)
T 1z47_A 115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE-----------PFAAIDTQIRRE 183 (355)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------TTCCSSHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHHHHH
Confidence 0000 2334456677778889999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.+++..+. ...+.++|++||+.+.+..
T Consensus 184 l~~~l~~l~---~~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 184 LRTFVRQVH---DEMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp HHHHHHHHH---HHHTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHH---HhcCCEEEEECCCHHHHHH
Confidence 999988873 2236889999999776543
No 99
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.44 E-value=9.4e-14 Score=117.35 Aligned_cols=113 Identities=20% Similarity=0.344 Sum_probs=81.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.+|..+.|.||||||||||+++|++.. ..+.+.+++.++.
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 105 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW 105 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccC
Confidence 4567899999999999999999999999842 3455544331110
Q ss_pred ------------H-hhhc-------------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccC
Q 024249 84 ------------Q-KYIG-------------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGS 119 (270)
Q Consensus 84 ------------~-~~~~-------------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~ 119 (270)
. ...+ ..+++.+-.+++|...+|.+|++||
T Consensus 106 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE------ 179 (262)
T 1b0u_A 106 SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE------ 179 (262)
T ss_dssp TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES------
T ss_pred CCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC------
Confidence 0 0000 0112234455667788999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 120 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
|+++.|+..+..+.+++..+. . .+.+||++||+++.+..
T Consensus 180 -----Pts~LD~~~~~~~~~~l~~l~---~-~g~tvi~vtHd~~~~~~ 218 (262)
T 1b0u_A 180 -----PTSALDPELVGEVLRIMQQLA---E-EGKTMVVVTHEMGFARH 218 (262)
T ss_dssp -----TTTTSCHHHHHHHHHHHHHHH---H-TTCCEEEECSCHHHHHH
T ss_pred -----CCccCCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHHHH
Confidence 899999999999999998873 2 36789999999776543
No 100
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.43 E-value=8.5e-14 Score=116.14 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=80.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH--------H-------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV--------Q------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~--------~------------------------- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. .
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~ 105 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG 105 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGG
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHh
Confidence 456788999999999999999999999984 23344444332110 0
Q ss_pred hh------------------h-c------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHH
Q 024249 85 KY------------------I-G------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 133 (270)
Q Consensus 85 ~~------------------~-~------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~ 133 (270)
.. . + ..+++.+-.+++|...+|.++++|| |+++.|+..
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE-----------Pts~LD~~~ 174 (240)
T 1ji0_A 106 AYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE-----------PSLGLAPIL 174 (240)
T ss_dssp GTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEEC-----------TTTTCCHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC-----------CcccCCHHH
Confidence 00 0 0 1122334455667788999999999 899999999
Q ss_pred HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 134 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 134 ~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+..+.+++..+. . .+.+||++||+++.+..
T Consensus 175 ~~~l~~~l~~~~---~-~g~tvi~vtHd~~~~~~ 204 (240)
T 1ji0_A 175 VSEVFEVIQKIN---Q-EGTTILLVEQNALGALK 204 (240)
T ss_dssp HHHHHHHHHHHH---H-TTCCEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHH---H-CCCEEEEEecCHHHHHH
Confidence 999999998873 2 46789999999766543
No 101
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.43 E-value=4.8e-12 Score=110.59 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=108.5
Q ss_pred cHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCe-----------------------
Q 024249 17 LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT----------------------- 73 (270)
Q Consensus 17 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~----------------------- 73 (270)
+++.++.+...+..- ..+..++|+||+|+|||++++++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 345555565555431 345679999999999999999999865432
Q ss_pred -EEEEcchhHHHhhhchhhHHHHHHHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc
Q 024249 74 -FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 148 (270)
Q Consensus 74 -~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 148 (270)
++.+.+.+- ........++.++..+.. ..+.|++|||+|.+. ....+. +++.++.
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~------------~~a~na---LLk~lEe-- 134 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANA---LLKTLEE-- 134 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHH---HHHHHTS--
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC------------HHHHHH---HHHHhcC--
Confidence 233322100 001122345666655532 346899999999863 222333 4444432
Q ss_pred CCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHH
Q 024249 149 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCT 228 (270)
Q Consensus 149 ~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~ 228 (270)
...++.+|++|++++.+.+.+++ |+ ..+.+++|+.++..++++... . ..+..+..++..+.| +.+.+..+++
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~-~~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---T-MSQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---C-CCHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred CCCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---C-CCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 33568888999999999999988 54 469999999999998887764 1 122234567777766 5554444443
No 102
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.43 E-value=3.8e-13 Score=113.32 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 95 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 95 ~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+-.+++|...+|.+|++|| |+++.|+..+..+.+++..+. . .+.+||++||+++.+..
T Consensus 161 rv~iAraL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~l~~l~---~-~g~tvi~vtHd~~~~~~ 218 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDE-----------PIAGVAPGLAHDIFNHVLELK---A-KGITFLIIEHRLDIVLN 218 (257)
T ss_dssp HHHHHHHHHTCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHH---H-TTCEEEEECSCCSTTGG
T ss_pred HHHHHHHHHcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH---H-CCCEEEEEecCHHHHHH
Confidence 4445557778999999999 999999999999999998873 2 37889999999987754
No 103
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.42 E-value=1.3e-13 Score=112.98 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=81.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH----------------------------HHhh---
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------VQKY--- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~----------------------------~~~~--- 86 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++ ....
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 108 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV 108 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC
Confidence 356788999999999999999999999984 2344444433210 0000
Q ss_pred ----------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHH
Q 024249 87 ----------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 142 (270)
Q Consensus 87 ----------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~ 142 (270)
+. ..+++.+-.+.+|...+|.++++|| |+++.|+..+..+.+++.
T Consensus 109 ~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~l~ 177 (214)
T 1sgw_A 109 KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD-----------PVVAIDEDSKHKVLKSIL 177 (214)
T ss_dssp CCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES-----------TTTTSCTTTHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CCcCCCHHHHHHHHHHHH
Confidence 00 1223445566667788999999999 899999999999999998
Q ss_pred hhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 143 QLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 143 ~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+. ..+.+||++||+++.+..
T Consensus 178 ~~~----~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 178 EIL----KEKGIVIISSREELSYCD 198 (214)
T ss_dssp HHH----HHHSEEEEEESSCCTTSS
T ss_pred HHH----hCCCEEEEEeCCHHHHHH
Confidence 873 235789999999887754
No 104
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.42 E-value=1.5e-13 Score=120.82 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=83.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH-------------------------------h-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ-------------------------------K- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~-------------------------------~- 85 (270)
+|.+.++..+.|.||||||||||+|+|++. +..+.+.+++.++.. .
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 102 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLEL 102 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence 456788999999999999999999999984 334555554322100 0
Q ss_pred ---------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 86 ---------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 86 ---------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
++. .++++.+-.+++|...+|.++++|| |.++.|...+..
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE-----------P~s~LD~~~r~~ 171 (362)
T 2it1_A 103 RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE-----------PLSNLDALLRLE 171 (362)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------GGGGSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCCHHHHHH
Confidence 000 2334456677778889999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+.+++..+. ...+.++|++||+.+.+.
T Consensus 172 l~~~l~~l~---~~~g~tvi~vTHd~~~a~ 198 (362)
T 2it1_A 172 VRAELKRLQ---KELGITTVYVTHDQAEAL 198 (362)
T ss_dssp HHHHHHHHH---HHHTCEEEEEESCHHHHH
T ss_pred HHHHHHHHH---HhCCCEEEEECCCHHHHH
Confidence 999998873 223688999999977654
No 105
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.42 E-value=5.9e-14 Score=117.04 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=81.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-------------------------Hh-------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV-------------------------QK------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~-------------------------~~------- 85 (270)
+|.+.+ ..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 97 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRN 97 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTT
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHH
Confidence 456788 99999999999999999999984 33455555432110 00
Q ss_pred -------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHH
Q 024249 86 -------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML 138 (270)
Q Consensus 86 -------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~ 138 (270)
.++ ..+++.+-.+++|...+|.++++|| |+++.|+..+..+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE-----------Pts~LD~~~~~~~~ 166 (240)
T 2onk_A 98 VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE-----------PLSAVDLKTKGVLM 166 (240)
T ss_dssp SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES-----------TTSSCCHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHHHHHHH
Confidence 000 1233445666778889999999999 89999999999999
Q ss_pred HHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 139 ELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 139 ~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++..+. .+.+.+||++||+.+.+..
T Consensus 167 ~~l~~l~---~~~g~tvi~vtHd~~~~~~ 192 (240)
T 2onk_A 167 EELRFVQ---REFDVPILHVTHDLIEAAM 192 (240)
T ss_dssp HHHHHHH---HHHTCCEEEEESCHHHHHH
T ss_pred HHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 9998873 2236789999999776543
No 106
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.42 E-value=5.7e-14 Score=123.38 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=83.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.++..+.|.||||||||||+|+|++. +..+.+.+++.++..
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 104 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIA 104 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHH
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHH
Confidence 456789999999999999999999999983 233444443211100
Q ss_pred -------------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 -------------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 -------------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.++. .++++.+-.+++|...+|.++++|| |.++.|.
T Consensus 105 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDE-----------P~s~LD~ 173 (353)
T 1oxx_K 105 FPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE-----------PFSNLDA 173 (353)
T ss_dssp GGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTSCG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CcccCCH
Confidence 0000 2334456677778889999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
..+..+.+++..+. ...+.++|++||+.+.+..
T Consensus 174 ~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~~~~~ 206 (353)
T 1oxx_K 174 RMRDSARALVKEVQ---SRLGVTLLVVSHDPADIFA 206 (353)
T ss_dssp GGHHHHHHHHHHHH---HHHCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 99999999888873 2236889999999776543
No 107
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.42 E-value=2.4e-13 Score=119.03 Aligned_cols=113 Identities=27% Similarity=0.346 Sum_probs=83.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH------------------------------H-h-
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV------------------------------Q-K- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~------------------------------~-~- 85 (270)
+|.+.++..+.|.||||||||||+|+|++. +..+.+.+++.++. . .
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~ 99 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM 99 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 456788999999999999999999999984 34455555442210 0 0
Q ss_pred ------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH
Q 024249 86 ------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 139 (270)
Q Consensus 86 ------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~ 139 (270)
++. .++++.+-.+++|...+|.++++|| |.++.|...+..+.+
T Consensus 100 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE-----------P~s~LD~~~~~~l~~ 168 (348)
T 3d31_A 100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE-----------PLSALDPRTQENARE 168 (348)
T ss_dssp HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES-----------SSTTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCCHHHHHHHHH
Confidence 000 1233456666778889999999999 899999999999999
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 140 LLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
++..+. ...+.++|++||+.+.+.
T Consensus 169 ~l~~l~---~~~g~tii~vTHd~~~~~ 192 (348)
T 3d31_A 169 MLSVLH---KKNKLTVLHITHDQTEAR 192 (348)
T ss_dssp HHHHHH---HHTTCEEEEEESCHHHHH
T ss_pred HHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 998873 234789999999977653
No 108
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.42 E-value=1.9e-13 Score=120.65 Aligned_cols=113 Identities=23% Similarity=0.281 Sum_probs=82.9
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.++..+.|.||||||||||+|+|++. +..+.+.+++.++..
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 110 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI 110 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence 456788999999999999999999999983 334455544322100
Q ss_pred --------------------------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHH
Q 024249 85 --------------------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 136 (270)
Q Consensus 85 --------------------------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~ 136 (270)
.++. .++++.+-.+++|...+|.+|++|| |.++.|...+..
T Consensus 111 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE-----------P~s~LD~~~r~~ 179 (372)
T 1v43_A 111 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE-----------PLSNLDAKLRVA 179 (372)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES-----------TTTTSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CCccCCHHHHHH
Confidence 0000 1223456667778889999999999 899999999999
Q ss_pred HHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 137 MLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 137 l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+.+++..+. ...+.++|++||+.+.+.
T Consensus 180 l~~~l~~l~---~~~g~tvi~vTHd~~~a~ 206 (372)
T 1v43_A 180 MRAEIKKLQ---QKLKVTTIYVTHDQVEAM 206 (372)
T ss_dssp HHHHHHHHH---HHHTCEEEEEESCHHHHH
T ss_pred HHHHHHHHH---HhCCCEEEEEeCCHHHHH
Confidence 999988873 223688999999977654
No 109
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.41 E-value=3.7e-13 Score=112.68 Aligned_cols=111 Identities=19% Similarity=0.352 Sum_probs=82.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+.+|..+.|.||||||||||+++|++. +..+.+.+++.++.
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~ 108 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 108 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCC
Confidence 456788999999999999999999999984 23445554432110
Q ss_pred --------------------Hhhh-----------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 84 --------------------QKYI-----------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 84 --------------------~~~~-----------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
...+ . ..+++.+-.+++|...+|.++++|| |+++.|
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDE-----------Pts~LD 177 (247)
T 2ff7_A 109 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE-----------ATSALD 177 (247)
T ss_dssp TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECC-----------CCSCCC
T ss_pred CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCC
Confidence 0000 0 1234456667778888999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+.....+.+++..+. .+.+||++||+++.+.
T Consensus 178 ~~~~~~i~~~l~~~~-----~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 178 YESEHVIMRNMHKIC-----KGRTVIIIAHRLSTVK 208 (247)
T ss_dssp HHHHHHHHHHHHHHH-----TTSEEEEECSSGGGGT
T ss_pred HHHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHH
Confidence 999999999998872 2678999999977553
No 110
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.41 E-value=2.2e-13 Score=120.32 Aligned_cols=113 Identities=23% Similarity=0.244 Sum_probs=82.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.++..+.|.||||||||||+|+|++. +..+.+.+++.++..
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 102 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI 102 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHH
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHH
Confidence 456788999999999999999999999984 333444443211100
Q ss_pred ----h----------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ----K----------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ----~----------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
. ++. .++++.+-.+++|...+|.+|++|| |.++.|
T Consensus 103 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE-----------P~s~LD 171 (372)
T 1g29_1 103 AFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE-----------PLSNLD 171 (372)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEEC-----------TTTTSC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECC-----------CCccCC
Confidence 0 000 2234456667778889999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
...+..+.+++..+. ...+.++|++||+.+.+.
T Consensus 172 ~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~~a~ 204 (372)
T 1g29_1 172 AKLRVRMRAELKKLQ---RQLGVTTIYVTHDQVEAM 204 (372)
T ss_dssp HHHHHHHHHHHHHHH---HHHTCEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEECCCHHHHH
Confidence 999999999888873 223688999999977654
No 111
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.39 E-value=1.8e-13 Score=114.63 Aligned_cols=112 Identities=19% Similarity=0.259 Sum_probs=82.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH-------hh---------------------h--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ-------KY---------------------I-- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~-------~~---------------------~-- 87 (270)
+|.+.+|..+.|.||||+|||||+++|++. +. +.+.+++.++.. .. .
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 98 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ 98 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh
Confidence 456788999999999999999999999984 34 666665432100 00 0
Q ss_pred --------------------------c--hhhHHHHHHHHHHHhcCCe-------EEEEcCCCcccCcccCCCCCCCChH
Q 024249 88 --------------------------G--EGSRMVRELFVMAREHAPS-------IIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 88 --------------------------~--~~~~~~~~~~~~a~~~~p~-------il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
. ..+++.+-.+.+|....|. ++++|| |+++.|+.
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE-----------Pts~LD~~ 167 (249)
T 2qi9_C 99 HDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE-----------PMNSLDVA 167 (249)
T ss_dssp SSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS-----------TTTTCCHH
T ss_pred ccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC-----------CcccCCHH
Confidence 0 1223345555667778899 999999 89999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+..+.+++..+. . .+.+||++||+.+.+..
T Consensus 168 ~~~~l~~~l~~l~---~-~g~tviivtHd~~~~~~ 198 (249)
T 2qi9_C 168 QQSALDKILSALS---Q-QGLAIVMSSHDLNHTLR 198 (249)
T ss_dssp HHHHHHHHHHHHH---H-TTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHH---h-CCCEEEEEeCCHHHHHH
Confidence 9999999998873 2 36789999999876543
No 112
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.39 E-value=1e-12 Score=111.22 Aligned_cols=113 Identities=23% Similarity=0.317 Sum_probs=81.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH------------------------------HH-hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL------------------------------VQ-KY 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~------------------------------~~-~~ 86 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++ .. ..
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 106 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKN 106 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHh
Confidence 456789999999999999999999999984 2334444332110 00 00
Q ss_pred -----------------hc--------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHH
Q 024249 87 -----------------IG--------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 135 (270)
Q Consensus 87 -----------------~~--------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~ 135 (270)
.+ ..+++.+-.+++|...+|.++++|| |+++.|+....
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE-----------Pts~LD~~~~~ 175 (266)
T 2yz2_A 107 FYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE-----------PLVGLDREGKT 175 (266)
T ss_dssp TCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC-----------ccccCCHHHHH
Confidence 00 0112344566667788999999999 89999999999
Q ss_pred HHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 136 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 136 ~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+.+++..+. .. +.+||++||+++.+..
T Consensus 176 ~l~~~l~~l~---~~-g~tii~vtHd~~~~~~ 203 (266)
T 2yz2_A 176 DLLRIVEKWK---TL-GKTVILISHDIETVIN 203 (266)
T ss_dssp HHHHHHHHHH---HT-TCEEEEECSCCTTTGG
T ss_pred HHHHHHHHHH---Hc-CCEEEEEeCCHHHHHH
Confidence 9999998873 23 6889999999887764
No 113
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.39 E-value=5.4e-13 Score=111.92 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=80.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh----cCCeEEEEcchhHH--------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSGSELV-------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~----~~~~~i~i~~~~~~-------------------------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 102 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLR 102 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHH
Confidence 456788999999999999999999999984 23445544332110
Q ss_pred --H-h-------------------------------hhc---hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCC
Q 024249 84 --Q-K-------------------------------YIG---EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126 (270)
Q Consensus 84 --~-~-------------------------------~~~---~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~ 126 (270)
. . .++ ..+++.+-.+.+|...+|.+|++|| |+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE-----------Pt 171 (250)
T 2d2e_A 103 LALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDE-----------TD 171 (250)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEEC-----------GG
T ss_pred HHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CC
Confidence 0 0 000 0112334456667778899999999 89
Q ss_pred CCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 127 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 127 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
++.|+..+..+.+++..+. ..+.+||++||+++.+.
T Consensus 172 s~LD~~~~~~l~~~l~~l~----~~g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 172 SGLDIDALKVVARGVNAMR----GPNFGALVITHYQRILN 207 (250)
T ss_dssp GTTCHHHHHHHHHHHHHHC----STTCEEEEECSSSGGGG
T ss_pred cCCCHHHHHHHHHHHHHHH----hcCCEEEEEecCHHHHH
Confidence 9999999999999998873 24788999999987654
No 114
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.39 E-value=2.8e-13 Score=116.68 Aligned_cols=111 Identities=21% Similarity=0.357 Sum_probs=83.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.++++..+.|.||+|+|||||+++|++. +..+.+.+++.++.
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~ 153 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV 153 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc
Confidence 356788999999999999999999999984 33455555543210
Q ss_pred --------------------Hhhh-------------chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 84 --------------------QKYI-------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 84 --------------------~~~~-------------~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
...+ =.++++.+-.+++|...+|.||+||| |+++.|
T Consensus 154 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDE-----------Pts~LD 222 (306)
T 3nh6_A 154 TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDE-----------ATSALD 222 (306)
T ss_dssp TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC-----------CSSCCC
T ss_pred cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CcccCC
Confidence 0000 02345567778888889999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+.....+.+.+..+. .+.++|++||+++.+.
T Consensus 223 ~~~~~~i~~~l~~l~-----~~~Tvi~itH~l~~~~ 253 (306)
T 3nh6_A 223 TSNERAIQASLAKVC-----ANRTTIVVAHRLSTVV 253 (306)
T ss_dssp HHHHHHHHHHHHHHH-----TTSEEEEECCSHHHHH
T ss_pred HHHHHHHHHHHHHHc-----CCCEEEEEEcChHHHH
Confidence 999999999888773 2468999999977654
No 115
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.39 E-value=1.2e-12 Score=110.97 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=81.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+.++..+.|.||||||||||+++|++. +..+.+.+++.++..
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~ 118 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT 118 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcc
Confidence 456889999999999999999999999984 233445444321100
Q ss_pred -----h----------------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 85 -----K----------------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 85 -----~----------------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
. .+. ..+++.+-.+++|...+|.+|++|| |+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE-----------Pts~L 187 (271)
T 2ixe_A 119 RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN-----------ATSAL 187 (271)
T ss_dssp SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTC
T ss_pred cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CccCC
Confidence 0 000 1123346667778889999999999 89999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
|+..+..+.+++..+. ...+.+||++||+++.+
T Consensus 188 D~~~~~~i~~~l~~~~---~~~g~tviivtHd~~~~ 220 (271)
T 2ixe_A 188 DAGNQLRVQRLLYESP---EWASRTVLLITQQLSLA 220 (271)
T ss_dssp CHHHHHHHHHHHHHCT---TTTTSEEEEECSCHHHH
T ss_pred CHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHHHH
Confidence 9999999999998873 23478899999997644
No 116
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.38 E-value=1.2e-13 Score=95.68 Aligned_cols=78 Identities=28% Similarity=0.353 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-hhhhccchh
Q 024249 187 ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM-KKETEKNMS 264 (270)
Q Consensus 187 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~-~~~~~~~~~ 264 (270)
++|.+||+.++++.....++|+..+|..|+||||+||.++|++|++.|+++....|+.+||+.|+.++. +..++..++
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~ 79 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFD 79 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHH
Confidence 478999999999888878899999999999999999999999999999999888999999999999995 445554443
No 117
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.38 E-value=2.8e-13 Score=115.41 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=79.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH-----------------Hh---hh----------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV-----------------QK---YI---------- 87 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~-----------------~~---~~---------- 87 (270)
+|.+.++..+.|.||||+|||||+++|++. +..+.+.+++.++. +. .+
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl 120 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVV 120 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHH
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHH
Confidence 356788999999999999999999999984 23344444331110 00 00
Q ss_pred --------------c---------------------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCC
Q 024249 88 --------------G---------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 126 (270)
Q Consensus 88 --------------~---------------------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~ 126 (270)
. ..+++.+-.+++|...+|.+|++|| |+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDE-----------Pt 189 (279)
T 2ihy_A 121 ISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE-----------PA 189 (279)
T ss_dssp HTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES-----------TT
T ss_pred HhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC-----------Cc
Confidence 0 1112234455567778999999999 89
Q ss_pred CCCChHHHHHHHHHHHhhcCCcCCCCeEE--EEEeCCCCCchh
Q 024249 127 GNGDSEVQRTMLELLNQLDGFEASNKIKV--LMATNRIDILDQ 167 (270)
Q Consensus 127 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~v--i~tt~~~~~l~~ 167 (270)
++.|+..+..+.+++..+. .. +.+| |++||+.+.+..
T Consensus 190 s~LD~~~~~~l~~~l~~l~---~~-g~tv~~iivtHd~~~~~~ 228 (279)
T 2ihy_A 190 AGLDFIARESLLSILDSLS---DS-YPTLAMIYVTHFIEEITA 228 (279)
T ss_dssp TTCCHHHHHHHHHHHHHHH---HH-CTTCEEEEEESCGGGCCT
T ss_pred cccCHHHHHHHHHHHHHHH---HC-CCEEEEEEEecCHHHHHH
Confidence 9999999999999998873 22 5567 999999876643
No 118
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.38 E-value=1.3e-12 Score=110.62 Aligned_cols=112 Identities=21% Similarity=0.348 Sum_probs=80.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh----cCCeEEEEcchhHH--------Hh----------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSGSELV--------QK---------------------- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~----~~~~~i~i~~~~~~--------~~---------------------- 85 (270)
+|.+.+|..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~ 119 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQ 119 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHH
Confidence 456789999999999999999999999984 23445554432110 00
Q ss_pred -----h-----------------------------------hc---hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCccc
Q 024249 86 -----Y-----------------------------------IG---EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 122 (270)
Q Consensus 86 -----~-----------------------------------~~---~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~ 122 (270)
. +. ..+++.+-.+++|...+|.+|++||
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDE--------- 190 (267)
T 2zu0_C 120 TALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE--------- 190 (267)
T ss_dssp HHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEES---------
T ss_pred HHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeC---------
Confidence 0 00 0112234455556778899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 123 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
|+++.|+..+..+.+++..+. ..+.+||++||+++.+.
T Consensus 191 --Pts~LD~~~~~~l~~~l~~l~----~~g~tviivtHd~~~~~ 228 (267)
T 2zu0_C 191 --SDSGLDIDALKVVADGVNSLR----DGKRSFIIVTHYQRILD 228 (267)
T ss_dssp --TTTTCCHHHHHHHHHHHHTTC----CSSCEEEEECSSGGGGG
T ss_pred --CCCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeeCHHHHH
Confidence 899999999999999998772 34789999999987654
No 119
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.37 E-value=1.7e-12 Score=109.47 Aligned_cols=111 Identities=18% Similarity=0.299 Sum_probs=81.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC-CeEEEEcchhHHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-~~~i~i~~~~~~~---------------------------------- 84 (270)
+|.+.+|..+.|.||||+|||||+++|++... .+.+.+++.++..
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~ 119 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCC
Confidence 45678999999999999999999999998432 3445444321100
Q ss_pred ----------------hh---------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ----------------KY---------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ----------------~~---------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
.. .. ..+++.+-.+++|...+|.++++|| |+++.|+
T Consensus 120 ~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE-----------Pts~LD~ 188 (260)
T 2ghi_A 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDE-----------ATSSLDS 188 (260)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEEC-----------CCCTTCH
T ss_pred CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCCH
Confidence 00 00 1223455567778888999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
.....+.+++..+. + +.+||++||+++.+.
T Consensus 189 ~~~~~i~~~l~~l~----~-~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 189 KTEYLFQKAVEDLR----K-NRTLIIIAHRLSTIS 218 (260)
T ss_dssp HHHHHHHHHHHHHT----T-TSEEEEECSSGGGST
T ss_pred HHHHHHHHHHHHhc----C-CCEEEEEcCCHHHHH
Confidence 99999999998873 2 578999999977653
No 120
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.35 E-value=2.1e-12 Score=107.42 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=80.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcch----------------------------hH---HH--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS----------------------------EL---VQ-- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~----------------------------~~---~~-- 84 (270)
+|.+.++..+.|.||||||||||+++|++.. ..+.+.+++. .. ..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 104 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC 104 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHH
Confidence 4567899999999999999999999999842 2233332210 00 00
Q ss_pred ---hh---------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhh
Q 024249 85 ---KY---------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 144 (270)
Q Consensus 85 ---~~---------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l 144 (270)
.. +. ..+++.+-.+++|...+|.++++|| |+++.|+.....+.+++...
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE-----------Pts~LD~~~~~~i~~~l~~~ 173 (237)
T 2cbz_A 105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD-----------PLSAVDAHVGKHIFENVIGP 173 (237)
T ss_dssp TCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES-----------TTTTSCHHHHHHHHHHTTST
T ss_pred hhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------cccccCHHHHHHHHHHHHHH
Confidence 00 00 1234566778888899999999999 89999999998888877432
Q ss_pred cCCcCCCCeEEEEEeCCCCCch
Q 024249 145 DGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 145 ~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
... ..+.+||++||+.+.+.
T Consensus 174 ~~~--~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 174 KGM--LKNKTRILVTHSMSYLP 193 (237)
T ss_dssp TST--TTTSEEEEECSCSTTGG
T ss_pred Hhh--cCCCEEEEEecChHHHH
Confidence 211 23678999999988764
No 121
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.32 E-value=1.1e-12 Score=110.24 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=80.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEE-------Ecch----------h-HH-Hh--h----------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIR-------VSGS----------E-LV-QK--Y---------- 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~-------i~~~----------~-~~-~~--~---------- 86 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+. +... + +. .. .
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 104 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHH
Confidence 3567889999999999999999999999842 222221 1000 0 00 00 0
Q ss_pred ---------------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHh
Q 024249 87 ---------------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 143 (270)
Q Consensus 87 ---------------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 143 (270)
+. ..+++.+-.+++|...+|.++++|| |+++.|+..+..+.+++..
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDE-----------PTSALDLANQDIVLSLLID 173 (253)
T ss_dssp HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESS-----------SSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHH
Confidence 00 1233446666778889999999999 8999999999999999988
Q ss_pred hcCCcCCCCeEEEEEeCCCCCchh
Q 024249 144 LDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 144 l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+. ...+.+||++||+.+.+..
T Consensus 174 l~---~~~g~tvi~vtHd~~~~~~ 194 (253)
T 2nq2_C 174 LA---QSQNMTVVFTTHQPNQVVA 194 (253)
T ss_dssp HH---HTSCCEEEEEESCHHHHHH
T ss_pred HH---HhcCCEEEEEecCHHHHHH
Confidence 73 2336889999999876643
No 122
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=2.4e-11 Score=104.69 Aligned_cols=142 Identities=12% Similarity=0.172 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc------CCeEEEEcchhHHHhhhch
Q 024249 16 GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGSELVQKYIGE 89 (270)
Q Consensus 16 G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~------~~~~i~i~~~~~~~~~~~~ 89 (270)
|.++.++.|...+... .+..++|+||+|+|||++++++++.+ ...++.+++.. ...
T Consensus 1 g~~~~~~~L~~~i~~~-------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCB
T ss_pred ChHHHHHHHHHHHHCC-------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCC
Confidence 5666777777777652 24579999999999999999999752 34566666532 012
Q ss_pred hhHHHHHHHHHHHhc----CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 90 GSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 90 ~~~~~~~~~~~a~~~----~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
....++.++..+... ...|++|||+|.+- ...++.+...+++ ......+|++|++++.+
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEE-----PPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHS-----CCTTEEEEEEESCGGGS
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhC-----CCCCeEEEEEECChHhC
Confidence 233466777666432 34799999998862 2234444444433 23567888888989999
Q ss_pred hhhhcCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 024249 166 DQALLRPGRIDRKIEFPNPNEESRLDILKIHS 197 (270)
Q Consensus 166 ~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~ 197 (270)
.+.+++ | .+.+++|+.++..+.++...
T Consensus 126 ~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 999988 5 68899999998888887665
No 123
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.31 E-value=1e-12 Score=109.73 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=79.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhH--------------------------HH-------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL--------------------------VQ------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~--------------------------~~------- 84 (270)
+|.+.+|..+.|.||||||||||+++|++.. ..+.+.+++.++ ..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 101 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE 101 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhcc
Confidence 4567899999999999999999999999732 223333322110 00
Q ss_pred ------------------hh---------------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 85 ------------------KY---------------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 85 ------------------~~---------------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
.. .. ..+++.+-.+++|...+|.++++|| |+++.
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDE-----------Pts~L 170 (243)
T 1mv5_A 102 GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDE-----------ATASL 170 (243)
T ss_dssp SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC-----------CSCSS
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CcccC
Confidence 00 00 1234556677788889999999999 88899
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
|+.....+.+++..+. .+.+||++||+++.+
T Consensus 171 D~~~~~~i~~~l~~~~-----~~~tvi~vtH~~~~~ 201 (243)
T 1mv5_A 171 DSESESMVQKALDSLM-----KGRTTLVIAHRLSTI 201 (243)
T ss_dssp CSSSCCHHHHHHHHHH-----TTSEEEEECCSHHHH
T ss_pred CHHHHHHHHHHHHHhc-----CCCEEEEEeCChHHH
Confidence 9988888888888772 267899999997654
No 124
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.29 E-value=2.6e-12 Score=114.11 Aligned_cols=110 Identities=21% Similarity=0.271 Sum_probs=82.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCeEEEEcchhH------------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSEL------------------------------------ 82 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~i~~~~~------------------------------------ 82 (270)
+|.+.++..+.|.||||||||||+++|++.. ..+.+.+++.++
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~ 120 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcccc
Confidence 3567899999999999999999999999732 234444443211
Q ss_pred -----------------HHhhhc-------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH
Q 024249 83 -----------------VQKYIG-------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 132 (270)
Q Consensus 83 -----------------~~~~~~-------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~ 132 (270)
...++. .+.++.+-.+++|....|.+|++|| |+++.|..
T Consensus 121 ~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDE-----------Pts~LD~~ 189 (390)
T 3gd7_A 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE-----------PSAHLDPV 189 (390)
T ss_dssp CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEES-----------HHHHSCHH
T ss_pred CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCHH
Confidence 001111 2345677788889999999999999 88999999
Q ss_pred HHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 133 VQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 133 ~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.+..+...+..+. .+.++|++||+.+.+
T Consensus 190 ~~~~l~~~l~~~~-----~~~tvi~vtHd~e~~ 217 (390)
T 3gd7_A 190 TYQIIRRTLKQAF-----ADCTVILCEARIEAM 217 (390)
T ss_dssp HHHHHHHHHHTTT-----TTSCEEEECSSSGGG
T ss_pred HHHHHHHHHHHHh-----CCCEEEEEEcCHHHH
Confidence 9998888887652 357899999997654
No 125
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.28 E-value=1.1e-11 Score=104.48 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=79.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh-cCCeEEEEcchhHH-----------------------------Hh----
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH-TDCTFIRVSGSELV-----------------------------QK---- 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~-~~~~~i~i~~~~~~-----------------------------~~---- 85 (270)
+|.+. +..+.|.||||+|||||+++|++. +..+.+.+++.++. ..
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~ 103 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL 103 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCC
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcch
Confidence 45678 999999999999999999999975 33344444331100 00
Q ss_pred ---------------------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHH
Q 024249 86 ---------------------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 142 (270)
Q Consensus 86 ---------------------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~ 142 (270)
.+. ...++.+-.+++|...+|.++++|| |+++.|+..+..+.+++.
T Consensus 104 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~L~ 172 (263)
T 2pjz_A 104 DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE-----------PFENVDAARRHVISRYIK 172 (263)
T ss_dssp CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC-----------TTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CccccCHHHHHHHHHHHH
Confidence 000 1223456666778889999999999 899999999999999998
Q ss_pred hhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 143 QLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 143 ~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.+. . +||++||+++.+..
T Consensus 173 ~~~----~---tviivtHd~~~~~~ 190 (263)
T 2pjz_A 173 EYG----K---EGILVTHELDMLNL 190 (263)
T ss_dssp HSC----S---EEEEEESCGGGGGG
T ss_pred Hhc----C---cEEEEEcCHHHHHH
Confidence 873 1 89999999876543
No 126
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.26 E-value=6.3e-12 Score=117.60 Aligned_cols=111 Identities=21% Similarity=0.307 Sum_probs=84.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~--------------------------------- 84 (270)
++.+++|+.+.|.||+|+|||||++++++.. ..+.+.+++.++..
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~ 440 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP 440 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC
Confidence 3557889999999999999999999999843 44666665532200
Q ss_pred ---------------------hhh-------------chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ---------------------KYI-------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ---------------------~~~-------------~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+ =.++++.+-.+++|...+|.++++|| |+++.|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDE-----------pts~LD 509 (578)
T 4a82_A 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE-----------ATSALD 509 (578)
T ss_dssp SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEES-----------TTTTCC
T ss_pred CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCC
Confidence 000 02345567778888889999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+.....+.+.+..+. .+.++|++||+++.+.
T Consensus 510 ~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~~~ 540 (578)
T 4a82_A 510 LESESIIQEALDVLS-----KDRTTLIVAHRLSTIT 540 (578)
T ss_dssp HHHHHHHHHHHHHHT-----TTSEEEEECSSGGGTT
T ss_pred HHHHHHHHHHHHHHc-----CCCEEEEEecCHHHHH
Confidence 999998998888773 2468999999988664
No 127
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.26 E-value=8.1e-12 Score=117.28 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=86.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~--------------------------------- 84 (270)
++.+++|+.+.|.||+|+|||||++.+++.. ..+.+.+++.++..
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~ 454 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP 454 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC
Confidence 3567889999999999999999999999843 44566665532200
Q ss_pred ---------------------hhh-------------chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ---------------------KYI-------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ---------------------~~~-------------~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+ =.++++.+-.+++|...+|.++++|| |+++.|
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDE-----------pts~LD 523 (598)
T 3qf4_B 455 GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE-----------ATSNVD 523 (598)
T ss_dssp TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECC-----------CCTTCC
T ss_pred CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CccCCC
Confidence 000 02345667788888899999999999 899999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.....+.+.+..+. .+.++|++||+++.+..
T Consensus 524 ~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~~~~ 555 (598)
T 3qf4_B 524 TKTEKSIQAAMWKLM-----EGKTSIIIAHRLNTIKN 555 (598)
T ss_dssp HHHHHHHHHHHHHHH-----TTSEEEEESCCTTHHHH
T ss_pred HHHHHHHHHHHHHHc-----CCCEEEEEecCHHHHHc
Confidence 999999999888773 36789999999887643
No 128
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.26 E-value=6e-12 Score=97.20 Aligned_cols=97 Identities=16% Similarity=0.279 Sum_probs=63.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 121 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~ 121 (270)
++..++|+||+|+|||||++++++.. +...+++++.++... +...+|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~--- 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG--- 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC---
Confidence 57889999999999999999999865 445778777664332 123468899999976532
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC-CCCch--hhhcC
Q 024249 122 MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR-IDILD--QALLR 171 (270)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~-~~~l~--~~l~r 171 (270)
...+..+.++++.+. .++...+|+|||. +..+. +.+.+
T Consensus 97 ---------~~~~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S 137 (149)
T 2kjq_A 97 ---------NEEQALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT 137 (149)
T ss_dssp ---------SHHHHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH
T ss_pred ---------hHHHHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH
Confidence 222666777777653 1222226677774 44443 44444
No 129
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.25 E-value=1.4e-11 Score=102.01 Aligned_cols=110 Identities=19% Similarity=0.245 Sum_probs=77.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcch-------------hH---------------H---H--
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS-------------EL---------------V---Q-- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~-------------~~---------------~---~-- 84 (270)
+|.+++|..+.|.||||+|||||+++|++.. ..+.+.+++. .+ . .
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 107 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC 107 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHh
Confidence 4567889999999999999999999999843 2333333210 00 0 0
Q ss_pred ---hhh---------------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHH-HHh
Q 024249 85 ---KYI---------------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL-LNQ 143 (270)
Q Consensus 85 ---~~~---------------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~-l~~ 143 (270)
... . ..+++.+-.+++|...+|.++++|| |+++.|+.....+.+. +..
T Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDE-----------Pts~LD~~~~~~i~~~l~~~ 176 (229)
T 2pze_A 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS-----------PFGYLDVLTEKEIFESCVCK 176 (229)
T ss_dssp TCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES-----------TTTTSCHHHHHHHHHHCCCC
T ss_pred CcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC-----------cccCCCHHHHHHHHHHHHHH
Confidence 000 0 1234566778888899999999999 8999999998887775 333
Q ss_pred hcCCcCCCCeEEEEEeCCCCCc
Q 024249 144 LDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 144 l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+ . .+.+||++||+++.+
T Consensus 177 ~----~-~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 177 L----M-ANKTRILVTSKMEHL 193 (229)
T ss_dssp C----T-TTSEEEEECCCHHHH
T ss_pred h----h-CCCEEEEEcCChHHH
Confidence 3 1 257899999997654
No 130
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.25 E-value=1.7e-11 Score=114.71 Aligned_cols=111 Identities=24% Similarity=0.382 Sum_probs=81.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------- 84 (270)
++.+++|+.+.|.||+|+|||||++.+++. +..+.+.+++.++..
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 442 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE 442 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC
Confidence 455788999999999999999999999974 334555554422100
Q ss_pred ----------------------hhh-------------chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 85 ----------------------KYI-------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 85 ----------------------~~~-------------~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
..+ =.++++.+-.+++|...+|.++++|| |+++.
T Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDE-----------pts~L 511 (582)
T 3b5x_A 443 GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE-----------ATSAL 511 (582)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccC
Confidence 000 01234456667778889999999999 89999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
|+.....+.+.+..+. .+.++|++||+++.+.
T Consensus 512 D~~~~~~i~~~l~~~~-----~~~tvi~itH~~~~~~ 543 (582)
T 3b5x_A 512 DTESERAIQAALDELQ-----KNKTVLVIAHRLSTIE 543 (582)
T ss_pred CHHHHHHHHHHHHHHc-----CCCEEEEEecCHHHHH
Confidence 9999999999888772 2678999999977553
No 131
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.24 E-value=6.4e-13 Score=105.05 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=69.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHH------------HHHhcC--CeEEEEcchhHH------H-------------hh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARA------------VAHHTD--CTFIRVSGSELV------Q-------------KY 86 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~------------ia~~~~--~~~i~i~~~~~~------~-------------~~ 86 (270)
+|.+++|..++|.||||||||||+++ +.+... .+...+...... . ..
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 82 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATN 82 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 35567899999999999999999994 433211 110111110000 0 00
Q ss_pred hchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH----------------HHHHHHHHHHhhcCCcCC
Q 024249 87 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE----------------VQRTMLELLNQLDGFEAS 150 (270)
Q Consensus 87 ~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~----------------~~~~l~~~l~~l~~~~~~ 150 (270)
.....++.+..++++....|.++++|| |+++.|+. ....+.+++..+ . +
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDE-----------Pt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l---~-~ 147 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNL-----------PEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGL---Q-R 147 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECC-----------CHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTH---H-H
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeC-----------CHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhH---H-h
Confidence 112234455667777888999999999 56666655 334555555444 2 2
Q ss_pred CCeEEEEEeCCCCCchh
Q 024249 151 NKIKVLMATNRIDILDQ 167 (270)
Q Consensus 151 ~~~~vi~tt~~~~~l~~ 167 (270)
.+.++|++||+++.+..
T Consensus 148 ~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 148 EGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HTCSEEEEECSHHHHHH
T ss_pred cCCcEEEEeCCHHHhhh
Confidence 37889999999776653
No 132
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.22 E-value=1.1e-09 Score=95.57 Aligned_cols=190 Identities=17% Similarity=0.212 Sum_probs=114.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH---
Q 024249 6 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL--- 82 (270)
Q Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~--- 82 (270)
-|+...+.++|.++.++.|.+ +.. ..++|+||+|+|||+|++.+++......+++++...
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 69 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER 69 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTC
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccc
Confidence 345567889999999988887 532 378999999999999999999887666677765432
Q ss_pred --------HHhh---h--------------c------------h------hhHHHHHHHHHHHhc--CCeEEEEcCCCcc
Q 024249 83 --------VQKY---I--------------G------------E------GSRMVRELFVMAREH--APSIIFMDEIDSI 117 (270)
Q Consensus 83 --------~~~~---~--------------~------------~------~~~~~~~~~~~a~~~--~p~il~lDeid~l 117 (270)
.... . + . ....+..++...... .|.+|+|||++.+
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~ 149 (357)
T 2fna_A 70 NYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQEL 149 (357)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHh
Confidence 0000 0 0 0 011233444433332 4899999999987
Q ss_pred cCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhh--c-----CCCCcceEEEeCCCCHHHHH
Q 024249 118 GSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQAL--L-----RPGRIDRKIEFPNPNEESRL 190 (270)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l--~-----r~~r~~~~i~~~~p~~~~r~ 190 (270)
.... . ......+..+.+.. .++.+|+|++....+...+ . -.+|+...+.+++.+.++..
T Consensus 150 ~~~~------~--~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 150 VKLR------G--VNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp GGCT------T--CCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred hccC------c--hhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 5310 0 11122233333321 3577788777533222210 0 12355678999999999999
Q ss_pred HHHHHhhccCCCCCCCCHHHHHHHcCCCCHHHHHHHHH
Q 024249 191 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCT 228 (270)
Q Consensus 191 ~il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~ 228 (270)
+++...+....... .+...+...+.| .+.-+..++.
T Consensus 216 ~~l~~~~~~~~~~~-~~~~~i~~~t~G-~P~~l~~~~~ 251 (357)
T 2fna_A 216 EFLRRGFQEADIDF-KDYEVVYEKIGG-IPGWLTYFGF 251 (357)
T ss_dssp HHHHHHHHHHTCCC-CCHHHHHHHHCS-CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CcHHHHHHHhCC-CHHHHHHHHH
Confidence 99987654322211 134778888887 4555555544
No 133
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.22 E-value=2.4e-11 Score=113.76 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=84.0
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH----------------------------------
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ---------------------------------- 84 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~---------------------------------- 84 (270)
|.+++|+.+.|.||+|+|||||++++++.. ..+.+.+++.++..
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~ 443 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED 443 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCC
Confidence 457889999999999999999999999843 44666665543210
Q ss_pred ----------------hhh-----------c------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCCh
Q 024249 85 ----------------KYI-----------G------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 131 (270)
Q Consensus 85 ----------------~~~-----------~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~ 131 (270)
... + .++++.+-.+++|...+|.|+++|| |+++.|+
T Consensus 444 ~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDE-----------pts~LD~ 512 (587)
T 3qf4_A 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDD-----------CTSSVDP 512 (587)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEES-----------CCTTSCH
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEC-----------CcccCCH
Confidence 000 0 2345567778888899999999999 8999999
Q ss_pred HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 132 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 132 ~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.....+.+.+..+. .+.++|++||+++.+
T Consensus 513 ~~~~~i~~~l~~~~-----~~~tvi~itH~l~~~ 541 (587)
T 3qf4_A 513 ITEKRILDGLKRYT-----KGCTTFIITQKIPTA 541 (587)
T ss_dssp HHHHHHHHHHHHHS-----TTCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHhC-----CCCEEEEEecChHHH
Confidence 99999999888762 368899999997654
No 134
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.22 E-value=6.1e-11 Score=94.25 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=71.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH---------------------------------HHhhhch--hhH
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL---------------------------------VQKYIGE--GSR 92 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~---------------------------------~~~~~~~--~~~ 92 (270)
.+.|.||||||||||++.|++..+..+.-...... ...+... ..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 47899999999999999999865432211110000 0111111 233
Q ss_pred HHHHHHHHH-----HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC---CCCC
Q 024249 93 MVRELFVMA-----REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN---RIDI 164 (270)
Q Consensus 93 ~~~~~~~~a-----~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~---~~~~ 164 (270)
+.+..+.+| ....|.++++||++ |.++.|+.....+.+++.. .+.++|+++| +.+.
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEig---------p~~~ld~~~~~~l~~~l~~-------~~~~~i~~~H~~h~~~~ 145 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIG---------KMELFSKKFRDLVRQIMHD-------PNVNVVATIPIRDVHPL 145 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCS---------TTGGGCHHHHHHHHHHHTC-------TTSEEEEECCSSCCSHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCC---------CcccCCHHHHHHHHHHHhc-------CCCeEEEEEccCCCchH
Confidence 455566664 78899999999965 3456677777777777643 3455777776 4333
Q ss_pred chhhhcCCCCcceEEEeCCCCH
Q 024249 165 LDQALLRPGRIDRKIEFPNPNE 186 (270)
Q Consensus 165 l~~~l~r~~r~~~~i~~~~p~~ 186 (270)
++....++ -...+++...+.
T Consensus 146 ~~~i~~r~--~~~i~~~~~~~r 165 (178)
T 1ye8_A 146 VKEIRRLP--GAVLIELTPENR 165 (178)
T ss_dssp HHHHHTCT--TCEEEECCTTTT
T ss_pred HHHHHhcC--CcEEEEecCcCH
Confidence 44333331 123466665554
No 135
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.22 E-value=1.7e-11 Score=114.85 Aligned_cols=111 Identities=25% Similarity=0.369 Sum_probs=82.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
++.+++|+.+.|.||+|+|||||++.+++. +..+.+.+++.++.
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 442 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART 442 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC
Confidence 455788999999999999999999999984 33455555442210
Q ss_pred ---------------------Hhhh-------------chhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCC
Q 024249 84 ---------------------QKYI-------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 129 (270)
Q Consensus 84 ---------------------~~~~-------------~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~ 129 (270)
...+ =.++++.+-.+++|...+|.++++|| |+++.
T Consensus 443 ~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDE-----------pts~L 511 (582)
T 3b60_A 443 EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE-----------ATSAL 511 (582)
T ss_dssp SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEET-----------TTSSC
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC-----------ccccC
Confidence 0000 01234556667778889999999999 89999
Q ss_pred ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 130 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 130 ~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
|+.....+.+.+..+. + +.++|++||+++.+.
T Consensus 512 D~~~~~~i~~~l~~~~----~-~~tvi~itH~~~~~~ 543 (582)
T 3b60_A 512 DTESERAIQAALDELQ----K-NRTSLVIAHRLSTIE 543 (582)
T ss_dssp CHHHHHHHHHHHHHHH----T-TSEEEEECSCGGGTT
T ss_pred CHHHHHHHHHHHHHHh----C-CCEEEEEeccHHHHH
Confidence 9999999999988873 2 678999999987653
No 136
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.20 E-value=6e-12 Score=116.40 Aligned_cols=112 Identities=16% Similarity=0.246 Sum_probs=82.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcch------------------h-HH--------------H--
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS------------------E-LV--------------Q-- 84 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~------------------~-~~--------------~-- 84 (270)
.+.++..+.|.||||||||||+++|++.. ..+.+.+... + +. .
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~ 369 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEV 369 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHT
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHH
Confidence 35688999999999999999999999832 2222211100 0 00 0
Q ss_pred -----------hhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCC
Q 024249 85 -----------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 151 (270)
Q Consensus 85 -----------~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 151 (270)
..+. .++++.+..+++|....|.||++|| |+++.|...+..+.+++..+. ...
T Consensus 370 l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE-----------PT~gLD~~~~~~i~~~l~~l~---~~~ 435 (538)
T 3ozx_A 370 TKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ-----------PSSYLDVEERYIVAKAIKRVT---RER 435 (538)
T ss_dssp TTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHH---HHT
T ss_pred HHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH---HhC
Confidence 0011 2455678888999999999999999 999999999999999998873 234
Q ss_pred CeEEEEEeCCCCCchh
Q 024249 152 KIKVLMATNRIDILDQ 167 (270)
Q Consensus 152 ~~~vi~tt~~~~~l~~ 167 (270)
+.+||++||+.+.+..
T Consensus 436 g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 436 KAVTFIIDHDLSIHDY 451 (538)
T ss_dssp TCEEEEECSCHHHHHH
T ss_pred CCEEEEEeCCHHHHHH
Confidence 7889999999877654
No 137
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.19 E-value=2.6e-10 Score=120.89 Aligned_cols=139 Identities=20% Similarity=0.339 Sum_probs=92.6
Q ss_pred CCceEEEEcCCCchHHHHH-HHHHHhcCCeEEEEcchhHHHhhhchhhHHHHHHHHHHH---------------hcCCeE
Q 024249 45 QPKGVLLYGPPGTGKTLLA-RAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR---------------EHAPSI 108 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~-~~ia~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~---------------~~~p~i 108 (270)
.+.++||+||||||||+++ +.++...+..++.++.+...+ ...+...+.... ..++.|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 4688999999999999999 455555567777777654321 122333333321 123579
Q ss_pred EEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCC--------CCeEEEEEeCCCC-----CchhhhcCCCCc
Q 024249 109 IFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--------NKIKVLMATNRID-----ILDQALLRPGRI 175 (270)
Q Consensus 109 l~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--------~~~~vi~tt~~~~-----~l~~~l~r~~r~ 175 (270)
+||||++.-...+ .........+.++++. .++... .++.+|+|||.+. .++++++| ||
T Consensus 1340 lFiDEinmp~~d~------yg~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDK------YGSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA 1410 (2695)
T ss_dssp EEEETTTCSCCCS------SSCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE
T ss_pred EEecccccccccc------cCchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee
Confidence 9999998622211 1222344555566542 221111 2578999999984 79999999 77
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhcc
Q 024249 176 DRKIEFPNPNEESRLDILKIHSRR 199 (270)
Q Consensus 176 ~~~i~~~~p~~~~r~~il~~~~~~ 199 (270)
..+.++.|+.+++..|+..++..
T Consensus 1411 -~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1411 -AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp -EEEECCCCTTTHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999887654
No 138
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.18 E-value=9.1e-11 Score=94.75 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=60.5
Q ss_pred CCCCcccccCcHHHH----HHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcc
Q 024249 7 PDSTYDMIGGLDQQI----KEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 79 (270)
Q Consensus 7 ~~~~~~~i~G~~~~~----~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~ 79 (270)
.+.+|+++.+..... +.+.+++...-. ...+.+++|+||+|||||+++++++... +..++.+++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP---------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS---------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 367899998765332 333333332100 0123789999999999999999999865 567788888
Q ss_pred hhHHHhhhchhh-HHHHHHHHHHHhcCCeEEEEcCCCcc
Q 024249 80 SELVQKYIGEGS-RMVRELFVMAREHAPSIIFMDEIDSI 117 (270)
Q Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~a~~~~p~il~lDeid~l 117 (270)
.++......... ......+.... .+.+|+|||++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 776543322110 01122232222 3469999998664
No 139
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.18 E-value=3.6e-09 Score=91.98 Aligned_cols=193 Identities=20% Similarity=0.256 Sum_probs=114.5
Q ss_pred CCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH---
Q 024249 7 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV--- 83 (270)
Q Consensus 7 ~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~--- 83 (270)
|+...+.++|.++.++.|.+.+.. +..++|+||+|+|||+|++.+++..+ .+++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 455667899999999999887753 25799999999999999999998875 6666654331
Q ss_pred ---------H---hhhch---------------------hhHHHHHHHHH----HHhcCCeEEEEcCCCcccCcccCCCC
Q 024249 84 ---------Q---KYIGE---------------------GSRMVRELFVM----AREHAPSIIFMDEIDSIGSARMESGS 126 (270)
Q Consensus 84 ---------~---~~~~~---------------------~~~~~~~~~~~----a~~~~p~il~lDeid~l~~~~~~~~~ 126 (270)
. ..... ....+..++.. +....|.+|+|||++.+....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----- 144 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----- 144 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT-----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC-----
Confidence 0 00000 00112222222 222249999999999874310
Q ss_pred CCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh-----hc--CCCCcceEEEeCCCCHHHHHHHHHHhhcc
Q 024249 127 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA-----LL--RPGRIDRKIEFPNPNEESRLDILKIHSRR 199 (270)
Q Consensus 127 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~-----l~--r~~r~~~~i~~~~p~~~~r~~il~~~~~~ 199 (270)
...+......+..+++.. .++.+|+|+.....+... .. -.||+...+.+++.+.++-.++++..+..
T Consensus 145 ~~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 145 SRGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp TTTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 011223333444443332 367777776643222221 00 12355678999999999999998876543
Q ss_pred CCC-CCCCCHHHHHHHcCCCCHHHHHHHHH
Q 024249 200 MNL-MRGIDLKKIAEKMNGASGAELKAVCT 228 (270)
Q Consensus 200 ~~~-~~~~~~~~la~~~~g~~~~dl~~l~~ 228 (270)
... ........+...+.| .+.-+..++.
T Consensus 219 ~~~~~~~~~~~~i~~~tgG-~P~~l~~~~~ 247 (350)
T 2qen_A 219 VNLDVPENEIEEAVELLDG-IPGWLVVFGV 247 (350)
T ss_dssp TTCCCCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 322 122235567777777 4555555543
No 140
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.15 E-value=4.9e-11 Score=111.65 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 91 SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 91 ~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++.+-.+++|....|.++++|| |++++|+.....+.+++..+. ..+.+||++||+.+.+..
T Consensus 225 Ge~Qrv~iAraL~~~p~llllDE-----------Pts~LD~~~~~~l~~~l~~l~----~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 225 GELQRFAIGMSCVQEADVYMFDE-----------PSSYLDVKQRLNAAQIIRSLL----APTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEC-----------TTTTCCHHHHHHHHHHHHGGG----TTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEC-----------cccCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHH
Confidence 34456677778889999999999 999999999999999998883 346789999999887654
No 141
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.15 E-value=4.1e-11 Score=110.85 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 91 SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 91 ~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.++.+..+++|...+|.||++|| |+++.|...+..+.+++..+. . +.+||++||+.+.+..
T Consensus 142 Ge~Qrv~iA~aL~~~p~illlDE-----------Pts~LD~~~~~~l~~~l~~l~----~-g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 142 GGLQRLLVAASLLREADVYIFDQ-----------PSSYLDVRERMNMAKAIRELL----K-NKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHC----T-TSEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHh----C-CCEEEEEEeChHHHHh
Confidence 44567778888899999999999 999999999999999999883 2 6889999999876654
No 142
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.13 E-value=9.3e-11 Score=100.25 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=76.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcch-------------h----HH-----------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS-------------E----LV----------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~-------------~----~~----------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++.. ..+.+.+++. . +.
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~ 137 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ 137 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhC
Confidence 3567889999999999999999999999842 2232222110 0 00
Q ss_pred -----Hhhh-----------c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHH-Hhh
Q 024249 84 -----QKYI-----------G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL-NQL 144 (270)
Q Consensus 84 -----~~~~-----------~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l-~~l 144 (270)
.... . ..+++.+-.+++|....|.++++|| |+++.|+..+..+.+++ ..+
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE-----------Pts~LD~~~~~~i~~~ll~~~ 206 (290)
T 2bbs_A 138 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS-----------PFGYLDVLTEKEIFESCVCKL 206 (290)
T ss_dssp CHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEES-----------TTTTCCHHHHHHHHHHCCCCC
T ss_pred hHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHh
Confidence 0000 0 1234456677888899999999999 89999999988877753 333
Q ss_pred cCCcCCCCeEEEEEeCCCCCc
Q 024249 145 DGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 145 ~~~~~~~~~~vi~tt~~~~~l 165 (270)
. .+.+||++||+++.+
T Consensus 207 ----~-~~~tviivtHd~~~~ 222 (290)
T 2bbs_A 207 ----M-ANKTRILVTSKMEHL 222 (290)
T ss_dssp ----T-TTSEEEEECCCHHHH
T ss_pred ----h-CCCEEEEEecCHHHH
Confidence 1 367899999997654
No 143
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.12 E-value=6.7e-11 Score=111.05 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=82.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH--------------------------------h
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------------K 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------------~ 85 (270)
++.+++|+.+.|.||+|+|||||++.+++. +..+.+.+++.++.. .
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 443 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 443 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCC
Confidence 456788999999999999999999999984 334555554422100 0
Q ss_pred h--------------------------------h----c--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCC
Q 024249 86 Y--------------------------------I----G--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG 127 (270)
Q Consensus 86 ~--------------------------------~----~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~ 127 (270)
. . . .++++.+-.+++|...+|.++++|| |++
T Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDE-----------pts 512 (595)
T 2yl4_A 444 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE-----------ATS 512 (595)
T ss_dssp STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEEC-----------CCS
T ss_pred CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccc
Confidence 0 0 0 1234456667778888999999999 899
Q ss_pred CCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 128 NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 128 ~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
+.|+.....+.+.+..+. + +.++|++||+++.+.
T Consensus 513 ~LD~~~~~~i~~~l~~~~----~-~~tvi~itH~~~~~~ 546 (595)
T 2yl4_A 513 ALDAENEYLVQEALDRLM----D-GRTVLVIAHRLSTIK 546 (595)
T ss_dssp SCCHHHHHHHHHHHHHHH----T-TSEEEEECCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh----c-CCEEEEEecCHHHHH
Confidence 999999999999998873 2 478999999977553
No 144
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.12 E-value=5.9e-11 Score=109.90 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 91 SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 91 ~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++.+-.+++|...+|.+|++|| |++++|+..+..+.+++..+. ..+.+||++||+.+.+..
T Consensus 162 GekQRv~iAraL~~~P~lLlLDE-----------PTs~LD~~~~~~l~~~L~~l~----~~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 162 GELQRVAIAAALLRNATFYFFDE-----------PSSYLDIRQRLNAARAIRRLS----EEGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHH
Confidence 45567777888899999999999 999999999999999998883 247899999999876654
No 145
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.12 E-value=6.3e-11 Score=98.58 Aligned_cols=114 Identities=21% Similarity=0.267 Sum_probs=69.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHH--Hh--cCCeEEEEcchhHHHh------hhc-----------------------
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVA--HH--TDCTFIRVSGSELVQK------YIG----------------------- 88 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia--~~--~~~~~i~i~~~~~~~~------~~~----------------------- 88 (270)
|++++..++|.||||+|||||+++++ +. .+.+.+++........ ..+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 68899999999999999999999998 32 3445555543221100 000
Q ss_pred -------------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEE
Q 024249 89 -------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 155 (270)
Q Consensus 89 -------------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v 155 (270)
........+........|.++++||+..+.... .........+.+++..+. +.+++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~------~d~~~~~~~l~~l~~~l~----~~g~ti 175 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL------EEERKIREVLLKLNTILL----EMGVTT 175 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS------SSGGGHHHHHHHHHHHHH----HHCCEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc------CCHHHHHHHHHHHHHHHH----HCCCeE
Confidence 011222333334456789999999965543211 111344555777777763 347899
Q ss_pred EEEeCCCCCc
Q 024249 156 LMATNRIDIL 165 (270)
Q Consensus 156 i~tt~~~~~l 165 (270)
|++||+.+..
T Consensus 176 i~vtH~~~~~ 185 (251)
T 2ehv_A 176 ILTTEAPDPQ 185 (251)
T ss_dssp EEEECCC---
T ss_pred EEEECCCCCC
Confidence 9999998776
No 146
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.12 E-value=7.3e-11 Score=119.68 Aligned_cols=127 Identities=24% Similarity=0.375 Sum_probs=93.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHHH--------------------------h------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQ--------------------------K------ 85 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~~--------------------------~------ 85 (270)
+|.+++|..+.|+||+|||||||++.|.+- +..+.+.+++.++.. +
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld 1178 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLD 1178 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSC
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCC
Confidence 356789999999999999999999999984 455677776644310 0
Q ss_pred -------------------------------hhc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCC
Q 024249 86 -------------------------------YIG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 128 (270)
Q Consensus 86 -------------------------------~~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~ 128 (270)
.++ .++++.+-.+++|.-.+|.||+||| ++++
T Consensus 1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDE-----------aTSa 1247 (1321)
T 4f4c_A 1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE-----------ATSA 1247 (1321)
T ss_dssp TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEES-----------CCCS
T ss_pred CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeC-----------cccc
Confidence 000 2345567777888889999999999 7889
Q ss_pred CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhh----hcCCCCcceEEEeCCCC
Q 024249 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA----LLRPGRIDRKIEFPNPN 185 (270)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~----l~r~~r~~~~i~~~~p~ 185 (270)
.|++..+.+.+.+..+ ..+.++|++||+++.+..+ +...||+ ++...|.
T Consensus 1248 LD~~tE~~Iq~~l~~~-----~~~~TvI~IAHRLsTi~~aD~I~Vld~G~I---vE~Gth~ 1300 (1321)
T 4f4c_A 1248 LDTESEKVVQEALDRA-----REGRTCIVIAHRLNTVMNADCIAVVSNGTI---IEKGTHT 1300 (1321)
T ss_dssp TTSHHHHHHHHHHTTT-----SSSSEEEEECSSSSTTTTCSEEEEESSSSE---EEEECHH
T ss_pred CCHHHHHHHHHHHHHH-----cCCCEEEEeccCHHHHHhCCEEEEEECCEE---EEECCHH
Confidence 9999998888888765 2467899999998877542 3455554 5666543
No 147
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.08 E-value=1e-10 Score=109.67 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 91 SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 91 ~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+++.+..+++|...+|.+|++|| |++++|...+..+.++|..+. . .+.+||++||+.+.+..
T Consensus 232 GekQRvaIAraL~~~P~lLlLDE-----------PTs~LD~~~~~~l~~~L~~l~---~-~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 232 GELQRVAIAAALLRKAHFYFFDE-----------PSSYLDIRQRLKVARVIRRLA---N-EGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH---H-TTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH---h-cCCEEEEEecChHHHHh
Confidence 44567777888899999999999 999999999999999998883 2 37899999999876554
No 148
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.07 E-value=8.5e-11 Score=101.00 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcC--CeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccC
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 119 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~ 119 (270)
|+.++..++|+||||||||+|+..++...+ +.++.+...+....+....+..+..++....... +|+||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 566778889999999999999999997533 3344441111111111233444444555444444 999999999865
Q ss_pred cccCCCCCCC-ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 120 ARMESGSGNG-DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 120 ~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.....+..+. .....+.+.++...+ .+.++++|+++| +...++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~----k~~gvtVIlttn-p~s~de 240 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMA----ASRGCVVIASLN-PTSNDD 240 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHH----HHHTCEEEEECC-CSSCSS
T ss_pred ccccccccchHHHHHHHHHHHHHHHH----hhCCCEEEEEeC-Ccccch
Confidence 4322111111 122333333333322 344678888888 444444
No 149
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.06 E-value=6.8e-11 Score=110.81 Aligned_cols=111 Identities=21% Similarity=0.271 Sum_probs=79.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC--Ce-------EEEEcc----------hhHHH-----hh------------
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHTD--CT-------FIRVSG----------SELVQ-----KY------------ 86 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~~-------~i~i~~----------~~~~~-----~~------------ 86 (270)
+.+|..+.|.||||+|||||+++|++... .+ +-++.. .+... .+
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 46789999999999999999999998321 11 111100 00000 00
Q ss_pred ----------hc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeE
Q 024249 87 ----------IG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 154 (270)
Q Consensus 87 ----------~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 154 (270)
+. .++++.+..+++|....|.+++||| |+++.|...+..+.+++..+. ...+.+
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE-----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~t 524 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE-----------PSAYLDVEQRLAVSRAIRHLM---EKNEKT 524 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH---HHTTCE
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH---HhCCCE
Confidence 00 2334567777888889999999999 999999999999999998872 234678
Q ss_pred EEEEeCCCCCchh
Q 024249 155 VLMATNRIDILDQ 167 (270)
Q Consensus 155 vi~tt~~~~~l~~ 167 (270)
||++||+.+.+..
T Consensus 525 vi~vsHd~~~~~~ 537 (607)
T 3bk7_A 525 ALVVEHDVLMIDY 537 (607)
T ss_dssp EEEECSCHHHHHH
T ss_pred EEEEeCCHHHHHH
Confidence 9999999877654
No 150
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.06 E-value=1.8e-10 Score=116.86 Aligned_cols=112 Identities=19% Similarity=0.317 Sum_probs=86.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+++|+.+.|+||+|||||||++.|.+.. ..+.+.+++.++..
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~ 517 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE 517 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc
Confidence 3567899999999999999999999999854 45667766532200
Q ss_pred ---------------------hh-------hc------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ---------------------KY-------IG------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ---------------------~~-------~~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
.. +| .++++.+-.+++|.-.+|.|++||| +++..|
T Consensus 518 ~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE-----------~tSaLD 586 (1321)
T 4f4c_A 518 GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE-----------ATSALD 586 (1321)
T ss_dssp TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTSC
T ss_pred cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEec-----------ccccCC
Confidence 00 01 3456778888889999999999999 788888
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.....+.+.+..+. .+.++|++||++..+..
T Consensus 587 ~~te~~i~~~l~~~~-----~~~T~iiiaHrls~i~~ 618 (1321)
T 4f4c_A 587 AESEGIVQQALDKAA-----KGRTTIIIAHRLSTIRN 618 (1321)
T ss_dssp TTTHHHHHHHHHHHH-----TTSEEEEECSCTTTTTT
T ss_pred HHHHHHHHHHHHHHh-----CCCEEEEEcccHHHHHh
Confidence 888888888887662 36789999999987764
No 151
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.04 E-value=8.2e-11 Score=108.97 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=79.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC--Ce-------EEEEcc----------hhHHHh------------------
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHTD--CT-------FIRVSG----------SELVQK------------------ 85 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~~-------~i~i~~----------~~~~~~------------------ 85 (270)
+.+|..+.|.||||+|||||+++|++... .+ +-++.. .+....
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 46789999999999999999999998421 11 111110 000000
Q ss_pred ---------hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeE
Q 024249 86 ---------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 154 (270)
Q Consensus 86 ---------~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 154 (270)
.+. .++++.+-.++++....|.+|++|| |+++.|...+..+.+++..+. ...+.+
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE-----------Pt~~LD~~~~~~i~~~l~~l~---~~~g~t 454 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE-----------PSAYLDVEQRLAVSRAIRHLM---EKNEKT 454 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH---HHHTCE
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhCCCE
Confidence 000 2345567788888999999999999 999999999999999998872 223678
Q ss_pred EEEEeCCCCCchh
Q 024249 155 VLMATNRIDILDQ 167 (270)
Q Consensus 155 vi~tt~~~~~l~~ 167 (270)
||++||+.+.+..
T Consensus 455 vi~vsHd~~~~~~ 467 (538)
T 1yqt_A 455 ALVVEHDVLMIDY 467 (538)
T ss_dssp EEEECSCHHHHHH
T ss_pred EEEEeCCHHHHHH
Confidence 9999999877654
No 152
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.03 E-value=2e-10 Score=116.29 Aligned_cols=112 Identities=19% Similarity=0.313 Sum_probs=84.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH---------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ--------------------------------- 84 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~--------------------------------- 84 (270)
+|.+++|+.+.|+||+|||||||+++|++.. ..+.+.+++.++..
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~ 489 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE 489 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC
Confidence 3567889999999999999999999999853 44666666532200
Q ss_pred ---------------------hhh-------c------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC
Q 024249 85 ---------------------KYI-------G------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 130 (270)
Q Consensus 85 ---------------------~~~-------~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~ 130 (270)
..+ + .++++.+-.+++|...+|.|+++|| |+++.|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDE-----------pts~LD 558 (1284)
T 3g5u_A 490 DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDE-----------ATSALD 558 (1284)
T ss_dssp SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEES-----------TTCSSC
T ss_pred CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCCCCC
Confidence 000 0 2345667778888889999999999 889999
Q ss_pred hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 131 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 131 ~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
+.....+.+.+..+. .+.++|++||+.+.+..
T Consensus 559 ~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 559 TESEAVVQAALDKAR-----EGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp HHHHHHHHHHHHHHH-----TTSEEEEECSCHHHHTT
T ss_pred HHHHHHHHHHHHHHc-----CCCEEEEEecCHHHHHc
Confidence 998888888887652 36789999999776543
No 153
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.03 E-value=3e-10 Score=114.96 Aligned_cols=112 Identities=20% Similarity=0.354 Sum_probs=84.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhHH----------------------------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELV---------------------------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~~---------------------------------- 83 (270)
+|.+++|+.+.|+||+|+|||||+++|++. +..+.+.+++.++.
T Consensus 1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~ 1132 (1284)
T 3g5u_A 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDN 1132 (1284)
T ss_dssp CEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCC
Confidence 355788999999999999999999999973 33445554432210
Q ss_pred ----------------------Hhhh-------c------hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCC
Q 024249 84 ----------------------QKYI-------G------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 128 (270)
Q Consensus 84 ----------------------~~~~-------~------~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~ 128 (270)
...+ + .++++.+-.+++|...+|.||++|| |+++
T Consensus 1133 ~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDE-----------pTs~ 1201 (1284)
T 3g5u_A 1133 SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE-----------ATSA 1201 (1284)
T ss_dssp SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEES-----------CSSS
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeC-----------Cccc
Confidence 0000 0 2345667788888889999999999 8999
Q ss_pred CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchh
Q 024249 129 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 167 (270)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~ 167 (270)
.|......+.+.+.... .+.++|++||+.+.+..
T Consensus 1202 lD~~~~~~i~~~l~~~~-----~~~tvi~isH~l~~i~~ 1235 (1284)
T 3g5u_A 1202 LDTESEKVVQEALDKAR-----EGRTCIVIAHRLSTIQN 1235 (1284)
T ss_dssp CCHHHHHHHHHHHHHHS-----SSSCEEEECSCTTGGGS
T ss_pred CCHHHHHHHHHHHHHhC-----CCCEEEEEecCHHHHHc
Confidence 99999999999887752 36789999999987743
No 154
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.01 E-value=7.7e-10 Score=93.21 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=67.5
Q ss_pred HHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc--C-CeEEEEcchhHHHh-----------hhchhhHHHHHHHHHHHh
Q 024249 38 FESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--D-CTFIRVSGSELVQK-----------YIGEGSRMVRELFVMARE 103 (270)
Q Consensus 38 ~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~-~~~i~i~~~~~~~~-----------~~~~~~~~~~~~~~~a~~ 103 (270)
++++.+.++..++|.||+||||||+++++++.. . .+.+.+.+.++... .++.....++..+..+..
T Consensus 17 l~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 17 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp HHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHH
T ss_pred HHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHh
Confidence 344446788899999999999999999999853 2 44555444332100 001011245778888888
Q ss_pred cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 104 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 104 ~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
..|.+|++|| |. |...... +++.. ..+.+|++++|+.+
T Consensus 97 ~~p~illlDE-----------p~---D~~~~~~---~l~~~-----~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 97 EDPDVIFVGE-----------MR---DLETVET---ALRAA-----ETGHLVFGTLHTNT 134 (261)
T ss_dssp HCCSEEEESC-----------CC---SHHHHHH---HHHHH-----HTTCEEEEEECCSS
T ss_pred hCCCEEEeCC-----------CC---CHHHHHH---HHHHH-----ccCCEEEEEeCcch
Confidence 9999999999 33 4444332 23322 13567999999866
No 155
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.01 E-value=2.8e-10 Score=106.59 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=76.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcC--C-------eEEEEcc----------hhHH-Hh---------------------
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTD--C-------TFIRVSG----------SELV-QK--------------------- 85 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~--~-------~~i~i~~----------~~~~-~~--------------------- 85 (270)
..+.|.||||+|||||+++|++... . .+-++.. .+.. ..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 5689999999999999999998421 1 1111100 0000 00
Q ss_pred -----hhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEE
Q 024249 86 -----YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 158 (270)
Q Consensus 86 -----~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~t 158 (270)
.+. .++++.+..+++|...+|.||++|| |+++.|...+..+.+++..+. ...+.+||++
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE-----------PT~gLD~~~~~~i~~ll~~l~---~~~g~tviiv 524 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE-----------PSAYLDSEQRIICSKVIRRFI---LHNKKTAFIV 524 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC-----------TTTTCCHHHHHHHHHHHHHHH---HHHTCEEEEE
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH---HhCCCEEEEE
Confidence 001 2445677888889999999999999 999999999999999988773 2346889999
Q ss_pred eCCCCCchh
Q 024249 159 TNRIDILDQ 167 (270)
Q Consensus 159 t~~~~~l~~ 167 (270)
||+.+.+..
T Consensus 525 tHdl~~~~~ 533 (608)
T 3j16_B 525 EHDFIMATY 533 (608)
T ss_dssp CSCHHHHHH
T ss_pred eCCHHHHHH
Confidence 999877654
No 156
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.99 E-value=6.9e-09 Score=93.23 Aligned_cols=221 Identities=18% Similarity=0.127 Sum_probs=123.6
Q ss_pred ccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHH-HHhcCCeEEEEcch-----hHHHhhh
Q 024249 14 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV-AHHTDCTFIRVSGS-----ELVQKYI 87 (270)
Q Consensus 14 i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~i-a~~~~~~~i~i~~~-----~~~~~~~ 87 (270)
|.|.+..|+.|.-.+..--.. +....++||.|+||+ ||++++++ +.......+ ..+. .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEE
Confidence 677777666665544432110 112337999999999 99999999 765444332 2211 0110000
Q ss_pred chhhHH-HHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhh----cCCcCCCCeEEEEEeCCC
Q 024249 88 GEGSRM-VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL----DGFEASNKIKVLMATNRI 162 (270)
Q Consensus 88 ~~~~~~-~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l----~~~~~~~~~~vi~tt~~~ 162 (270)
+..+.. ..-.+..| ...++++||++.+ ++..+..+.+.|++- .+..-..+..||+|+|..
T Consensus 285 ~~tG~~~~~G~l~LA---dgGvl~lDEIn~~------------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 285 EDRGWALRAGAAVLA---DGGILAVDHLEGA------------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp ESSSEEEEECHHHHT---TTSEEEEECCTTC------------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred cCCCcccCCCeeEEc---CCCeeehHhhhhC------------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 000000 00111222 2359999998764 456677778877752 111112357799999976
Q ss_pred C-----------CchhhhcCCCCcceEEE-eCCCCHHHH---------HHHHHH---hhc-c--CCCCCCCCHHHHH---
Q 024249 163 D-----------ILDQALLRPGRIDRKIE-FPNPNEESR---------LDILKI---HSR-R--MNLMRGIDLKKIA--- 212 (270)
Q Consensus 163 ~-----------~l~~~l~r~~r~~~~i~-~~~p~~~~r---------~~il~~---~~~-~--~~~~~~~~~~~la--- 212 (270)
. .++.+++. |||..+. ...|+.++- .+.++. +.+ . .....+.-.+.+.
T Consensus 350 ~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y 427 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWY 427 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHH
T ss_pred cccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHH
Confidence 5 67778888 8976543 344443321 112222 122 1 1111111111111
Q ss_pred --------H------HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhcc
Q 024249 213 --------E------KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 261 (270)
Q Consensus 213 --------~------~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~ 261 (270)
. ..-|.|++.+.++++-|...|.-+.+..++.+|+..|+.-+..+....
T Consensus 428 ~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~ 490 (506)
T 3f8t_A 428 ETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETA 490 (506)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHh
Confidence 0 134789999999999999999999999999999999999886654443
No 157
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.99 E-value=1.1e-09 Score=89.73 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=65.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchh----HHHh--hhc------------------------
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE----LVQK--YIG------------------------ 88 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~----~~~~--~~~------------------------ 88 (270)
|+.++..++|+||||+|||||++.++... +..+++++... +... ..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 57889999999999999999999999632 34454443221 1110 000
Q ss_pred ------hhhHHHHHHHHHHHhcCCe--EEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeC
Q 024249 89 ------EGSRMVRELFVMAREHAPS--IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 160 (270)
Q Consensus 89 ------~~~~~~~~~~~~a~~~~p~--il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~ 160 (270)
........+...+....|. +|+|||+..+.. .|+.....+...+..+. ...+++||+++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~---------~d~~~~~~~~~~l~~~~---~~~~~~vi~~~h 166 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL---------DKPAMARKISYYLKRVL---NKWNFTIYATSQ 166 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS---------SCGGGHHHHHHHHHHHH---HHTTEEEEEEEC
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc---------CCHHHHHHHHHHHHHHH---HhCCCeEEEEec
Confidence 1122233344445557899 999999876532 13333444555555441 234789999999
Q ss_pred CC
Q 024249 161 RI 162 (270)
Q Consensus 161 ~~ 162 (270)
..
T Consensus 167 ~~ 168 (235)
T 2w0m_A 167 YA 168 (235)
T ss_dssp --
T ss_pred cC
Confidence 87
No 158
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.98 E-value=7.1e-10 Score=95.70 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=58.1
Q ss_pred CCCcccccCcH-H---HHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc----CCeEEEEcc
Q 024249 8 DSTYDMIGGLD-Q---QIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSG 79 (270)
Q Consensus 8 ~~~~~~i~G~~-~---~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----~~~~i~i~~ 79 (270)
+.+|+++.+-. + .++.+.+++.. +.-..+.+++|+||+|||||+|+++++... +..++++..
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~----------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ----------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH----------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh----------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 46888887643 2 22333333332 111236789999999999999999999744 467778887
Q ss_pred hhHHHhhhchhh-HHHHHHHHHHHhcCCeEEEEcCCCcc
Q 024249 80 SELVQKYIGEGS-RMVRELFVMAREHAPSIIFMDEIDSI 117 (270)
Q Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~a~~~~p~il~lDeid~l 117 (270)
.++......... ......+... ..+.+|+|||++..
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred HHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 776554322111 0111112211 24569999998653
No 159
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.95 E-value=2.8e-09 Score=103.73 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=67.5
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh-----cCC----eEE----------EEcchhHHHhhhchhhHHHHHHHHHH
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDC----TFI----------RVSGSELVQKYIGEGSRMVRELFVMA 101 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~-----~~~----~~i----------~i~~~~~~~~~~~~~~~~~~~~~~~a 101 (270)
|.+.++..++|+||||+||||++|.++.- .++ ... .+...+............+++....+
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il 747 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEII 747 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHH
Confidence 45667889999999999999999999741 111 001 11111111111222222222222222
Q ss_pred -HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHH-HHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 102 -REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 102 -~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
....|++|+||| |+.+.|+.....+. .++..+. ...+.++|++||+.+...
T Consensus 748 ~~a~~p~LlLLDE-----------P~~GlD~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 748 RKATSQSLVILDE-----------LGRGTSTHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHCCTTCEEEEES-----------TTTTSCHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred HhccCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHH
Confidence 257899999999 78889987665554 6777662 234788999999976554
No 160
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.94 E-value=1.9e-09 Score=87.79 Aligned_cols=118 Identities=19% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh------HHHh---------------hhc--hhhHHHHHHH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE------LVQK---------------YIG--EGSRMVRELF 98 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~------~~~~---------------~~~--~~~~~~~~~~ 98 (270)
|++++..++|+||||+|||||++.++...+.++++++... +... .+. .....+...+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 5888999999999999999999999986566777776543 1110 000 0111122233
Q ss_pred HHH--Hhc-CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 99 VMA--REH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 99 ~~a--~~~-~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
..+ ... .|.+|+|||+..+...... ..........+...+..+ ....+++||+++|.....
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~~~~---~~~~~~~~~~~~~~L~~l---~~~~~~~vi~~~h~~~~~ 159 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRAEEN---RSGLIAELSRQLQVLLWI---ARKHNIPVIVINQVHFDS 159 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTGGGG---SSTTHHHHHHHHHHHHHH---HHHHTCCEEEEECSSSSC
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhhcCc---hHHHHHHHHHHHHHHHHH---HHHcCCEEEEEeeEEEcC
Confidence 332 222 4999999998776533210 011111112222223332 223367788999876644
No 161
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.92 E-value=4.3e-10 Score=97.97 Aligned_cols=101 Identities=22% Similarity=0.260 Sum_probs=70.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchhHHH-----h---hhchhhHHHHHHHHHHHhcCCeEEE
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ-----K---YIGEGSRMVRELFVMAREHAPSIIF 110 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~~~~-----~---~~~~~~~~~~~~~~~a~~~~p~il~ 110 (270)
+.+.++..++|.||+|||||||++++++.. ..+.+.+++..... . ++.......+..+.+|...+|.+|+
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEE
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEE
Confidence 345678899999999999999999999864 45677776543111 0 0101345678888999999999999
Q ss_pred EcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 111 MDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 111 lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
+|| +.+ .+ +.+++..+. .++.++|+++|+.+
T Consensus 246 ldE-----------~~~---~e----~~~~l~~~~----~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 246 LGE-----------LRS---SE----AYDFYNVLC----SGHKGTLTTLHAGS 276 (330)
T ss_dssp ECC-----------CCS---TH----HHHHHHHHH----TTCCCEEEEEECSS
T ss_pred EcC-----------CCh---HH----HHHHHHHHh----cCCCEEEEEEcccH
Confidence 999 332 12 234555542 23456899999977
No 162
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.92 E-value=1.9e-09 Score=102.46 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHhcCCe--EEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 91 SRMVRELFVMAREHAPS--IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 91 ~~~~~~~~~~a~~~~p~--il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.++.+-.+++|....|. +|++|| |+++.|+.....+.+++..+. ..+.+||++||+++.+
T Consensus 206 Ge~QRv~iArAL~~~p~~~lLlLDE-----------PtsgLD~~~~~~l~~~l~~l~----~~g~tvi~vtHd~~~~ 267 (670)
T 3ux8_A 206 GEAQRIRLATQIGSRLTGVLYVLDE-----------PSIGLHQRDNDRLIATLKSMR----DLGNTLIVVEHDEDTM 267 (670)
T ss_dssp HHHHHHHHHHHHHTCCCSCEEEEEC-----------TTTTCCGGGHHHHHHHHHHHH----HTTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEC-----------CccCCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHH
Confidence 34567777888888888 999999 999999999999999998883 2478999999997754
No 163
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.92 E-value=8.4e-09 Score=91.75 Aligned_cols=207 Identities=20% Similarity=0.293 Sum_probs=118.3
Q ss_pred ccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHHhh--
Q 024249 12 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKY-- 86 (270)
Q Consensus 12 ~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~~~-- 86 (270)
+.+.|.....+++.+.+... ......++|+|++|||||++++++.... +.+++.++|..+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45666666666665555542 1234568999999999999999998754 4689999998653221
Q ss_pred ---hchhh-------HHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc--CCcC----C
Q 024249 87 ---IGEGS-------RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD--GFEA----S 150 (270)
Q Consensus 87 ---~~~~~-------~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~~~----~ 150 (270)
+|... ......|..| ....|||||++.+ ....+..+..+++.-. .... .
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELA---DGGTLFLDEIGEL------------SLEAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEESGGGC------------CHHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeC---CCcEEEEcChhhC------------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 11100 0011223333 2359999998875 3567777888887621 1111 1
Q ss_pred CCeEEEEEeCCCCCchhhhcCCCCc---------ceEEEeCCCCH--HHHHHHHHHhhcc----CCC-CCCCCHHHHHHH
Q 024249 151 NKIKVLMATNRIDILDQALLRPGRI---------DRKIEFPNPNE--ESRLDILKIHSRR----MNL-MRGIDLKKIAEK 214 (270)
Q Consensus 151 ~~~~vi~tt~~~~~l~~~l~r~~r~---------~~~i~~~~p~~--~~r~~il~~~~~~----~~~-~~~~~~~~la~~ 214 (270)
-.+.+|++||. .+... .+.|+| ...+.+|+... ++...+...++.. ... ...++-+.+...
T Consensus 271 ~~~rii~at~~--~l~~~-~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l 347 (387)
T 1ny5_A 271 VNVRILAATNR--NIKEL-VKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL 347 (387)
T ss_dssp CCCEEEEEESS--CHHHH-HHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH
T ss_pred ccEEEEEeCCC--CHHHH-HHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 25779999985 22222 223444 23345554322 4444455554433 221 123444444433
Q ss_pred c-CCC--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 215 M-NGA--SGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 215 ~-~g~--~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
. ..+ +-++|++++++|...+ ....|+.+|+-..
T Consensus 348 ~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 348 LSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 3 223 4579999999988765 3457888887543
No 164
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.92 E-value=1.3e-09 Score=106.37 Aligned_cols=110 Identities=23% Similarity=0.357 Sum_probs=78.5
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHH-hc-------CCeEEEEcch-----------hHH-----------------
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAH-HT-------DCTFIRVSGS-----------ELV----------------- 83 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~-~~-------~~~~i~i~~~-----------~~~----------------- 83 (270)
+|.+.+|..+.|.||||+|||||+++|++ .. .....++... +..
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~ 534 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE 534 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHH
Confidence 45577899999999999999999999994 11 0111221100 000
Q ss_pred --------Hhhhc--hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCe
Q 024249 84 --------QKYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 153 (270)
Q Consensus 84 --------~~~~~--~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 153 (270)
...++ .++++.+-.+.+|...+|.+|+||| |+++.|......+.++|.. .+.
T Consensus 535 lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE-----------PTs~LD~~~~~~l~~~L~~-------~g~ 596 (986)
T 2iw3_A 535 FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE-----------PTNHLDTVNVAWLVNYLNT-------CGI 596 (986)
T ss_dssp TTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES-----------TTTTCCHHHHHHHHHHHHH-------SCS
T ss_pred cCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CccCCCHHHHHHHHHHHHh-------CCC
Confidence 00011 2334567777888889999999999 8999999999999988876 257
Q ss_pred EEEEEeCCCCCchh
Q 024249 154 KVLMATNRIDILDQ 167 (270)
Q Consensus 154 ~vi~tt~~~~~l~~ 167 (270)
+||++||+.+.+..
T Consensus 597 tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 597 TSITISHDSVFLDN 610 (986)
T ss_dssp EEEEECSCHHHHHH
T ss_pred EEEEEECCHHHHHH
Confidence 89999999877654
No 165
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.91 E-value=8.9e-10 Score=90.37 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh--c-------CCeEEEEcch
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH--T-------DCTFIRVSGS 80 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~-------~~~~i~i~~~ 80 (270)
|++++..+.|.||||||||||++.+++. . +.+.++++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 6788999999999999999999999973 2 3446776654
No 166
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.90 E-value=3.6e-09 Score=92.92 Aligned_cols=101 Identities=22% Similarity=0.213 Sum_probs=63.7
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc----CCeEEEEcch-hHH---------HhhhchhhHHHHHHHHHHHhcCCeE
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGS-ELV---------QKYIGEGSRMVRELFVMAREHAPSI 108 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----~~~~i~i~~~-~~~---------~~~~~~~~~~~~~~~~~a~~~~p~i 108 (270)
..++..+++.||+||||||+++++++.. +..++.+... ++. +...+.....+...+..|...+|.+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdv 199 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDI 199 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSE
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCE
Confidence 3456789999999999999999999753 2233332211 000 0011111224566888999999999
Q ss_pred EEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 109 IFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 109 l~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
|++|| +. |.+....+.+.. ..+.+|++|+|+.+.+
T Consensus 200 illDE-----------p~---d~e~~~~~~~~~--------~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 200 ILVGE-----------MR---DLETIRLALTAA--------ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EEESC-----------CC---SHHHHHHHHHHH--------HTTCEEEEEESCSSHH
T ss_pred EecCC-----------CC---CHHHHHHHHHHH--------hcCCEEEEEEccChHH
Confidence 99999 33 344433333331 2367799999998765
No 167
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.90 E-value=1.4e-09 Score=105.97 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 92 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 92 ~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
++.+-.+.++...+|.+|+||| |+++.|......+.+.+..+ +.+||++||+.+.+.
T Consensus 906 QkQRVaLArAL~~~P~LLLLDE-----------PT~gLD~~s~~~L~~~L~~~-------g~tVIiISHD~e~v~ 962 (986)
T 2iw3_A 906 QKVKLVLAAGTWQRPHLIVLDE-----------PTNYLDRDSLGALSKALKEF-------EGGVIIITHSAEFTK 962 (986)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEC-----------GGGTCCHHHHHHHHHHHHSC-------SSEEEEECSCHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEEEEC-----------CccCCCHHHHHHHHHHHHHh-------CCEEEEEECCHHHHH
Confidence 4456677788889999999999 89999999888888877654 247999999976554
No 168
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.89 E-value=2.1e-09 Score=86.84 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=77.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh--------cC-CeEEEEcchhHHHhhh----------ch-----hhHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHH--------TD-CTFIRVSGSELVQKYI----------GE-----GSRMVRELFVMA 101 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~--------~~-~~~i~i~~~~~~~~~~----------~~-----~~~~~~~~~~~a 101 (270)
+..++++|+||||||+++..++.. .+ .+++..+...+..... .. ....+..++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 457899999999999998876432 23 4555444443321111 00 11222222111
Q ss_pred HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEe
Q 024249 102 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEF 181 (270)
Q Consensus 102 ~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~ 181 (270)
....++||+|||++.+++.+.+. .... .++..+.. ....+..+|++|+.++.++..++. |++..+.+
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~---~e~~-------rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAG---SKIP-------ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHI 150 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTT---CCCC-------HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEE
T ss_pred cccCceEEEEEChhhhccCcccc---chhH-------HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEE
Confidence 23457899999999997654211 1111 23333332 244577889999999999999887 89888888
Q ss_pred CCCCHH
Q 024249 182 PNPNEE 187 (270)
Q Consensus 182 ~~p~~~ 187 (270)
+.|...
T Consensus 151 ~~~~~~ 156 (199)
T 2r2a_A 151 ASNKMG 156 (199)
T ss_dssp EECSSC
T ss_pred cCcccC
Confidence 765443
No 169
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.89 E-value=2.1e-09 Score=88.89 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=64.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh--c-------CCeEEEEcchhH------HHh--hhc----------------
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH--T-------DCTFIRVSGSEL------VQK--YIG---------------- 88 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~-------~~~~i~i~~~~~------~~~--~~~---------------- 88 (270)
|++++..++|+||||+|||||++.++.. . +.+.++++.... ... ..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 6788999999999999999999999983 2 467788766541 100 000
Q ss_pred hhh---HHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCC-hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 89 EGS---RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD-SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 89 ~~~---~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
... ..+..+........|.+|+|||+..+...... +..+ .+.++.+.+++..+.......+++||+++|....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~ 176 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS---GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 176 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC----------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec
Confidence 001 11222333344578999999998876543210 0011 1111123333333322223347889999987655
Q ss_pred ch
Q 024249 165 LD 166 (270)
Q Consensus 165 l~ 166 (270)
..
T Consensus 177 ~~ 178 (243)
T 1n0w_A 177 VD 178 (243)
T ss_dssp --
T ss_pred CC
Confidence 43
No 170
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.87 E-value=3.2e-09 Score=100.96 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhcCC---eEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 91 SRMVRELFVMAREHAP---SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 91 ~~~~~~~~~~a~~~~p---~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.++.+-.+++|...+| .+|++|| |+++.|+.....+.+++..+. ..+.+||++||+++.+
T Consensus 547 G~~qrv~iAraL~~~p~~p~llllDE-----------Pt~~LD~~~~~~i~~~l~~l~----~~g~tvi~vtHd~~~~ 609 (670)
T 3ux8_A 547 GEAQRVKLAAELHRRSNGRTLYILDE-----------PTTGLHVDDIARLLDVLHRLV----DNGDTVLVIEHNLDVI 609 (670)
T ss_dssp HHHHHHHHHHHHHSCCCSCEEEEEES-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHH
Confidence 4556777778877665 6999999 899999999999999998883 2378999999997643
No 171
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.84 E-value=2.2e-09 Score=94.92 Aligned_cols=121 Identities=19% Similarity=0.278 Sum_probs=75.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccC
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 119 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~ 119 (270)
+++++++..++|+||||+||||+++++++..+..++.+....- ... |......+..++++||++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~----------~~~--~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD----------RLN--FELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT----------THH--HHHGGGTTCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch----------hHH--HHHHHhcchhHHHHHHHHHHHH
Confidence 3589999999999999999999999999987665554332210 000 0111223446789999998765
Q ss_pred -cccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCC
Q 024249 120 -ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 183 (270)
Q Consensus 120 -~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~ 183 (270)
.+.- ...+. .. ....+.+.+++ .+.|+++||+++.+ +++.++++++..+....
T Consensus 231 ~~r~l---~~~~~-~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDL---PSGQG-IN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTC---CCCSH-HH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhc---cccCc-ch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2210 01111 10 11222233332 35688899999999 78889998876655543
No 172
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.84 E-value=1e-08 Score=94.85 Aligned_cols=116 Identities=23% Similarity=0.276 Sum_probs=78.8
Q ss_pred hc-CCCCCceEEEEcCCCchHHHHHHH--HHH--hcCCeEEEEcchhHHH------hhhch-------------------
Q 024249 40 SL-GIAQPKGVLLYGPPGTGKTLLARA--VAH--HTDCTFIRVSGSELVQ------KYIGE------------------- 89 (270)
Q Consensus 40 ~~-~~~~~~~ilL~Gp~GtGKTtl~~~--ia~--~~~~~~i~i~~~~~~~------~~~~~------------------- 89 (270)
++ +++++..++|.||||||||||+++ +++ .++.+.+++++.+... ...+-
T Consensus 32 ~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~ 111 (525)
T 1tf7_A 32 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPD 111 (525)
T ss_dssp TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCC
T ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcc
Confidence 35 578899999999999999999999 455 3366777776643110 00000
Q ss_pred -----------hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEE
Q 024249 90 -----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 158 (270)
Q Consensus 90 -----------~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~t 158 (270)
...............+|.+|+|||+-.+.+ ..+.|+..+..+.+++..+. ..+++||++
T Consensus 112 ~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~------~~~lD~~~~~~l~~ll~~l~----~~g~tvl~i 181 (525)
T 1tf7_A 112 PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ------QYDASSVVRRELFRLVARLK----QIGATTVMT 181 (525)
T ss_dssp SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST------TTCCHHHHHHHHHHHHHHHH----HHTCEEEEE
T ss_pred cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHH------hcCCHHHHHHHHHHHHHHHH----HCCCEEEEE
Confidence 011222333334457899999999766432 23467788888899988883 247899999
Q ss_pred eCCCCCc
Q 024249 159 TNRIDIL 165 (270)
Q Consensus 159 t~~~~~l 165 (270)
||+.+.+
T Consensus 182 tH~~~~~ 188 (525)
T 1tf7_A 182 TERIEEY 188 (525)
T ss_dssp EECSSSS
T ss_pred ecCCCCc
Confidence 9999875
No 173
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.84 E-value=8.8e-09 Score=92.23 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhcCC--eEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 91 SRMVRELFVMAREHAP--SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 91 ~~~~~~~~~~a~~~~p--~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+++.+-.++.+....| .+|+||| |+++.|+.....+.++|..+. .+.+||++||+++.+
T Consensus 299 Ge~qrl~lA~~l~~~~~~~~LlLDE-----------pt~~LD~~~~~~l~~~L~~l~-----~~~~vi~itH~~~~~ 359 (415)
T 4aby_A 299 GELSRVMLAVSTVLGADTPSVVFDE-----------VDAGIGGAAAIAVAEQLSRLA-----DTRQVLVVTHLAQIA 359 (415)
T ss_dssp HHHHHHHHHHHHHHCCSSSEEEESS-----------TTTTCCHHHHHHHHHHHHHHT-----TTSEEEEECSCHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHh-----CCCEEEEEeCcHHHH
Confidence 3445566666777788 9999999 788999999999999999883 367899999996543
No 174
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.83 E-value=1.1e-08 Score=99.79 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=64.4
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHH-----hcCCe--------------EEEEcchhHHHhhhchhhHHHHHHHHHH
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAH-----HTDCT--------------FIRVSGSELVQKYIGEGSRMVRELFVMA 101 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~-----~~~~~--------------~i~i~~~~~~~~~~~~~~~~~~~~~~~a 101 (270)
+++..+..++|+||||+||||++|.++. ..++. +-.+...+-...........+.+ +..+
T Consensus 657 l~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~-~a~i 735 (934)
T 3thx_A 657 FEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE-TASI 735 (934)
T ss_dssp EETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHH-HHHH
T ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHH-HHHH
Confidence 3455678899999999999999999953 11210 01111111111111112222221 1222
Q ss_pred H--hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHH-HHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 102 R--EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 102 ~--~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l-~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
. ...|++|+||| |+.+.|+.....+ ..++..+. ...+.++|++||+.+..
T Consensus 736 l~~a~~~sLlLLDE-----------p~~GlD~~~~~~i~~~il~~l~---~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 736 LRSATKDSLIIIDE-----------LGRGTSTYDGFGLAWAISEYIA---TKIGAFCMFATHFHELT 788 (934)
T ss_dssp HHHCCTTCEEEEES-----------CSCSSCHHHHHHHHHHHHHHHH---HTTCCEEEEEESCGGGG
T ss_pred HHhccCCcEEEEeC-----------CCCCCCHHHHHHHHHHHHHHHH---hcCCCEEEEEcCcHHHH
Confidence 2 57899999999 7888888665544 66666663 23477899999996543
No 175
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.78 E-value=1e-08 Score=89.98 Aligned_cols=125 Identities=19% Similarity=0.208 Sum_probs=67.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCeEEEEcchhHH---------Hhh------------hch
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGSELV---------QKY------------IGE 89 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---------~~~~i~i~~~~~~---------~~~------------~~~ 89 (270)
.+|++++..+.|+||||||||||++.++... +..+++++..... ... +..
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~ 204 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVAR 204 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEe
Confidence 3578899999999999999999999999864 1344777664320 000 000
Q ss_pred --hhHHHHHHHH----HHHh-----cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEE
Q 024249 90 --GSRMVRELFV----MARE-----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 158 (270)
Q Consensus 90 --~~~~~~~~~~----~a~~-----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~t 158 (270)
......+.+. .+.. .+|.+|++||+-.++....+ ..+.-......+.+++..+..+....+++||++
T Consensus 205 ~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~--~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~ 282 (349)
T 1pzn_A 205 AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYI--GRGALAERQQKLAKHLADLHRLANLYDIAVFVT 282 (349)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCC--STTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhc--ccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 0111122222 2233 58999999997766532211 000001111223333333332223457889999
Q ss_pred eCCCCCch
Q 024249 159 TNRIDILD 166 (270)
Q Consensus 159 t~~~~~l~ 166 (270)
+|.....+
T Consensus 283 ~h~~~~~~ 290 (349)
T 1pzn_A 283 NQVQARPD 290 (349)
T ss_dssp EECC----
T ss_pred cccccccc
Confidence 99766443
No 176
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.76 E-value=3e-08 Score=102.58 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=77.1
Q ss_pred ChHHHHhcC---CCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchh----HHHhhhc------------hhh
Q 024249 34 HPELFESLG---IAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE----LVQKYIG------------EGS 91 (270)
Q Consensus 34 ~~~~~~~~~---~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~----~~~~~~~------------~~~ 91 (270)
.+++-.-+| ++++.+++|+||||||||+|+.+++.+. +....+++... +.....| ..+
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E 1491 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 1491 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHH
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHH
Confidence 334444445 8899999999999999999999998642 44555555442 1122222 334
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcccCccc---CCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEe
Q 024249 92 RMVRELFVMAREHAPSIIFMDEIDSIGSARM---ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMAT 159 (270)
Q Consensus 92 ~~~~~~~~~a~~~~p~il~lDeid~l~~~~~---~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt 159 (270)
+.++.+...+...+|++|+||+++.+.+... +...+ .-....+.+.+++.++.+.....+++||.|-
T Consensus 1492 ~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~-~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1492 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDS-HMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCC-CTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcChhHhccccccccccccc-ccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 5666677778889999999999998887431 11111 1111233444455554443345566666554
No 177
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.74 E-value=7.9e-09 Score=83.08 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=28.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEE
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 75 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i 75 (270)
++++..+++++||||||||+++.++|+.+...++
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4566678999999999999999999998765433
No 178
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.70 E-value=2.2e-08 Score=88.51 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=65.8
Q ss_pred HHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcC---CeEEEEcchhHHH---h---hhch-----hhHHHHHHHHHH
Q 024249 36 ELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSELVQ---K---YIGE-----GSRMVRELFVMA 101 (270)
Q Consensus 36 ~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~---~~~i~i~~~~~~~---~---~~~~-----~~~~~~~~~~~a 101 (270)
..+.++.+.++..++|+||+||||||+++++++... .+.+.+....+.. . ++.+ ....+...+..+
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHH
Confidence 456666678888999999999999999999998532 3333222221110 0 0111 112346677788
Q ss_pred HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 102 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 102 ~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
....|.+|++||+ . +.... ...+... ..+..|+.|+|..+
T Consensus 206 L~~~pd~illdE~-----------~---d~e~~---~~~l~~~-----~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEM-----------R---DLETV---ETALRAA-----ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCC-----------C---SHHHH---HHHHHHH-----TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCC-----------C---CHHHH---HHHHHHH-----hcCCEEEEEECcch
Confidence 8889999999993 2 33322 2333332 23566889999854
No 179
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.69 E-value=6e-08 Score=82.91 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=27.1
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
+++.++..++|.||||+|||||++.+++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 68899999999999999999999999974
No 180
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.68 E-value=4.4e-08 Score=85.81 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=69.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEEcchhHHH----hhh------------chhhHHHHHHHHHHH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELVQ----KYI------------GEGSRMVRELFVMAR 102 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i~~~~~~~----~~~------------~~~~~~~~~~~~~a~ 102 (270)
|++++..++|+||||+|||||+..++.. .+..+++++...... ... ...+..+..+-....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 5788899999999999999999999975 345566766543211 001 111222222222233
Q ss_pred hcCCeEEEEcCCCcccC-cccCCCCCC-CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCC
Q 024249 103 EHAPSIIFMDEIDSIGS-ARMESGSGN-GDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 161 (270)
Q Consensus 103 ~~~p~il~lDeid~l~~-~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~ 161 (270)
...|.++++|.+..+++ ...+...+. ......+.+.+++..+..+....+++||++.+-
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 47899999999998886 222211111 111223445555554444345567878887654
No 181
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.68 E-value=1.9e-08 Score=85.32 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=25.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
|+.++..++|+||||+|||||++.++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 678899999999999999999999986
No 182
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.67 E-value=2.6e-08 Score=88.73 Aligned_cols=120 Identities=16% Similarity=0.217 Sum_probs=67.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---------cCCeEEEEcchhHH--------Hhhhc----------------
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH---------TDCTFIRVSGSELV--------QKYIG---------------- 88 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---------~~~~~i~i~~~~~~--------~~~~~---------------- 88 (270)
|+.++..++|+||||||||||++.++.. .+.+.++++..... ...++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 7889999999999999999999977632 13457777664310 00011
Q ss_pred ---hhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 89 ---EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 89 ---~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
.....+..+........|.+|+||++-.++...... .+.-.+.++.+.+++..+..+....+++||+++|...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg--~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~ 329 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG--RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVA 329 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 001112223333445789999999988776543211 0111222333334444433333445789999999743
No 183
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.65 E-value=1e-07 Score=91.84 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=59.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHh-----cCCe----E----------EEEcchhHHHhhhchhhHHHHHH-HHHHHh
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHH-----TDCT----F----------IRVSGSELVQKYIGEGSRMVREL-FVMARE 103 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~-----~~~~----~----------i~i~~~~~~~~~~~~~~~~~~~~-~~~a~~ 103 (270)
.++..++|+||||+||||++|++++- .+.. . -.+...+-...........+..+ ......
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a 684 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNA 684 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhc
Confidence 46778999999999999999999862 1211 0 01111111110011111111111 111235
Q ss_pred cCCeEEEEcCCCcccCcccCCCCCCCChHHHH-HHHHHHHhhcCCcCCCCeEEEEEeCCCCCch
Q 024249 104 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQR-TMLELLNQLDGFEASNKIKVLMATNRIDILD 166 (270)
Q Consensus 104 ~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~-~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~ 166 (270)
..|++|++|| |+.+.++.... .+..++..+. ...+.++|++||+.+...
T Consensus 685 ~~psLlLLDE-----------p~~Gtd~~d~~~i~~~ll~~l~---~~~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 685 TEYSLVLMDE-----------IGRGTSTYDGLSLAWACAENLA---NKIKALTLFATHYFELTQ 734 (800)
T ss_dssp CTTEEEEEES-----------CCCCSSSSHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred cCCCEEEEEC-----------CCCCCChhHHHHHHHHHHHHHH---hccCCeEEEEeCCHHHHH
Confidence 7899999999 55555543332 2356666652 224678999999976543
No 184
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.64 E-value=9.5e-08 Score=94.31 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=66.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHH-----hcCCeE--------------EEEcchhHHHhhhchh-hHHHHHHHHHHHhcC
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH-----HTDCTF--------------IRVSGSELVQKYIGEG-SRMVRELFVMAREHA 105 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~-----~~~~~~--------------i~i~~~~~~~~~~~~~-~~~~~~~~~~a~~~~ 105 (270)
+..++|+||||+||||++|.++- ..++.+ ..+...+......... ....+..+..+....
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~ 868 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATA 868 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCC
Confidence 68899999999999999999942 122111 1111111111111111 112223344556778
Q ss_pred CeEEEEcCCCcccCcccCCCCCCCChHH-HHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCchhhh
Q 024249 106 PSIIFMDEIDSIGSARMESGSGNGDSEV-QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQAL 169 (270)
Q Consensus 106 p~il~lDeid~l~~~~~~~~~~~~~~~~-~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l 169 (270)
|++|+||| |+.+.|+.. ...+..++..+. ...+.++|++||+.+......
T Consensus 869 ~sLlLLDE-----------p~~Gtd~~dg~~~~~~il~~L~---~~~g~~vl~~TH~~el~~~~~ 919 (1022)
T 2o8b_B 869 HSLVLVDE-----------LGRGTATFDGTAIANAVVKELA---ETIKCRTLFSTHYHSLVEDYS 919 (1022)
T ss_dssp TCEEEEEC-----------TTTTSCHHHHHHHHHHHHHHHH---HTSCCEEEEECCCHHHHHHTS
T ss_pred CcEEEEEC-----------CCCCCChHHHHHHHHHHHHHHH---hcCCCEEEEEeCCHHHHHHhC
Confidence 99999999 677788665 455677777763 233678999999977665433
No 185
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.64 E-value=5.6e-08 Score=85.81 Aligned_cols=193 Identities=22% Similarity=0.332 Sum_probs=108.5
Q ss_pred cccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhcCC--eEEEEcchhHHHh-----
Q 024249 13 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGSELVQK----- 85 (270)
Q Consensus 13 ~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~--~~i~i~~~~~~~~----- 85 (270)
++.|......++.+.+...- .....++++|++||||+++++++....+. +++.++|..+...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45666666665555554321 23455999999999999999999875433 3999999864221
Q ss_pred hhchhh-------HHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhc--CCcCC----CC
Q 024249 86 YIGEGS-------RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD--GFEAS----NK 152 (270)
Q Consensus 86 ~~~~~~-------~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~~~~----~~ 152 (270)
.+|... ......|..| ....|||||++.+ +...+..+..+++.-. ..... -.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGEL------------DQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGS------------CHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccccCChHhhc---CCCeEEecChhhC------------CHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 111100 0011223333 2348999999875 3567777888887532 11111 14
Q ss_pred eEEEEEeCCCCCchhhhcCCCCcc---------eEEEeCCCCH--HHHHHHHHHhhccC----CC-CCCCCHHHHHHHcC
Q 024249 153 IKVLMATNRIDILDQALLRPGRID---------RKIEFPNPNE--ESRLDILKIHSRRM----NL-MRGIDLKKIAEKMN 216 (270)
Q Consensus 153 ~~vi~tt~~~~~l~~~l~r~~r~~---------~~i~~~~p~~--~~r~~il~~~~~~~----~~-~~~~~~~~la~~~~ 216 (270)
+.+|++||. .+... ...|+|. ..|.+|+... ++...++..++... .. ...++-+.+.....
T Consensus 264 ~rii~at~~--~l~~~-v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 264 IRVISATNK--NLEEE-IKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp CEEEEEESS--CHHHH-HHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT
T ss_pred eEEEEecCC--CHHHH-HHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 678999884 33322 2334542 2466665544 45555655554432 11 12344444443332
Q ss_pred -C--CCHHHHHHHHHHHHHHH
Q 024249 217 -G--ASGAELKAVCTEAGMFA 234 (270)
Q Consensus 217 -g--~~~~dl~~l~~~a~~~a 234 (270)
. -+-+++++++++|...+
T Consensus 341 ~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 341 QEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCCTTHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHHHHHhC
Confidence 1 24578888888876543
No 186
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.63 E-value=1.2e-06 Score=93.32 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=102.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
..+.++.||+|||||++++.+|+.++.+++.++|++-... ..+..+|..+... .+.+++||++.+-
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~~------- 710 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRLD------- 710 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSSC-------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhcC-------
Confidence 5678999999999999999999999999999999863321 2334455444433 4799999988742
Q ss_pred CCCCChHHHHHHHHHHHh----hc---------C--CcCCCCeEEEEEeC----CCCCchhhhcCCCCcceEEEeCCCCH
Q 024249 126 SGNGDSEVQRTMLELLNQ----LD---------G--FEASNKIKVLMATN----RIDILDQALLRPGRIDRKIEFPNPNE 186 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~----l~---------~--~~~~~~~~vi~tt~----~~~~l~~~l~r~~r~~~~i~~~~p~~ 186 (270)
+.....+.+.+.. +. + +.......|++|.| ....+++++.+ || ..+.+..|+.
T Consensus 711 -----~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~ 782 (2695)
T 4akg_A 711 -----EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQS 782 (2695)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCH
T ss_pred -----hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCH
Confidence 2333333322222 21 0 11223455778877 34578888877 66 5789999999
Q ss_pred HHHHHHHHHhhccCCCCCC-----CCH-HHHHHHcC-----CCCHHHHHHHHHHHHHH
Q 024249 187 ESRLDILKIHSRRMNLMRG-----IDL-KKIAEKMN-----GASGAELKAVCTEAGMF 233 (270)
Q Consensus 187 ~~r~~il~~~~~~~~~~~~-----~~~-~~la~~~~-----g~~~~dl~~l~~~a~~~ 233 (270)
+...+|+-... .+..... +.+ ..+.+... .|.-+.++.++..|+..
T Consensus 783 ~~i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 783 GTIAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp HHHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 98888753221 1110000 001 11122221 36778898888877653
No 187
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.63 E-value=2.2e-08 Score=81.34 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.++..+.|.||||||||||+++|++.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45888999999999999999999974
No 188
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.59 E-value=5e-08 Score=85.49 Aligned_cols=120 Identities=20% Similarity=0.322 Sum_probs=65.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEEcchhHH----Hhhhc------------hhhHHHHHHHHHHH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELV----QKYIG------------EGSRMVRELFVMAR 102 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i~~~~~~----~~~~~------------~~~~~~~~~~~~a~ 102 (270)
|++++..++|+||||+|||||+..++.. .+..+++++...-. ....+ ..++.+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 5778899999999999999999999863 34556666543211 11111 11122222222333
Q ss_pred hcCCeEEEEcCCCcccCcc-cCCCCCCCCh---HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 103 EHAPSIIFMDEIDSIGSAR-MESGSGNGDS---EVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 103 ~~~p~il~lDeid~l~~~~-~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
...|.+|+||++..+.+.. .+. ...+. ...+.+.+.+..+.....+.+++||+++|...
T Consensus 137 ~~~~~lIVIDsl~~l~~~~e~~~--~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVPRAEIEG--EMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp TTCCSEEEEECGGGCCCHHHHTT--C----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred cCCCCEEEEcChHhhcchhhhcc--ccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 5679999999999987421 110 00111 11123333333332212334678888887654
No 189
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.59 E-value=4.2e-09 Score=85.45 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=24.4
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
..+.++..+.|.||||||||||+++|++..
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 357889999999999999999999999854
No 190
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.58 E-value=1.5e-06 Score=81.20 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=99.1
Q ss_pred CCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHh-------cCCeEEEEcchh
Q 024249 9 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE 81 (270)
Q Consensus 9 ~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~-------~~~~~i~i~~~~ 81 (270)
.....++|.+..++.|.+.+... -..+..++|+||+|+|||||++.++.. ...+++.++...
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 34567999999999999888742 123567899999999999999999742 222344433221
Q ss_pred -----HHHhh------hc----------hhhHHHHHHHHHHHhc--CCeEEEEcCCCcccCcccCCCCCCCChHHHHHHH
Q 024249 82 -----LVQKY------IG----------EGSRMVRELFVMAREH--APSIIFMDEIDSIGSARMESGSGNGDSEVQRTML 138 (270)
Q Consensus 82 -----~~~~~------~~----------~~~~~~~~~~~~a~~~--~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~ 138 (270)
+.... .+ .....+...+...... .|.+|+||+++..
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--------------------- 248 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--------------------- 248 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH---------------------
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH---------------------
Confidence 11110 00 0111222223332222 6899999997541
Q ss_pred HHHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEe---CCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHc
Q 024249 139 ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEF---PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKM 215 (270)
Q Consensus 139 ~~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~---~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~ 215 (270)
..+..+ ..+..||+||.+...... . . +..+.+ ...+.++-.+++.................+++.+
T Consensus 249 ~~l~~l-----~~~~~ilvTsR~~~~~~~-~--~---~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~ 317 (591)
T 1z6t_A 249 WVLKAF-----DSQCQILLTTRDKSVTDS-V--M---GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKEC 317 (591)
T ss_dssp HHHHTT-----CSSCEEEEEESCGGGGTT-C--C---SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHH
T ss_pred HHHHHh-----cCCCeEEEECCCcHHHHh-c--C---CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHh
Confidence 112222 235678888886442221 1 1 223344 3578888888888765431111123356788888
Q ss_pred CCCCHHHHHHH
Q 024249 216 NGASGAELKAV 226 (270)
Q Consensus 216 ~g~~~~dl~~l 226 (270)
.| .|--|..+
T Consensus 318 ~G-~PLal~~~ 327 (591)
T 1z6t_A 318 KG-SPLVVSLI 327 (591)
T ss_dssp TT-CHHHHHHH
T ss_pred CC-CcHHHHHH
Confidence 77 45555433
No 191
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.57 E-value=2e-06 Score=86.50 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=103.0
Q ss_pred CcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHh-------cCCeEEEEcchh-
Q 024249 10 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE- 81 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~-------~~~~~i~i~~~~- 81 (270)
....++|.++.+++|.+.+... -.....+.|+|+.|+||||||+.++.. ....++.++...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 4467999999999999988642 123567899999999999999998864 223344444222
Q ss_pred ----HHHh------hh----------chhhHHHHHHHHHHHhcC--CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHH
Q 024249 82 ----LVQK------YI----------GEGSRMVRELFVMAREHA--PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 139 (270)
Q Consensus 82 ----~~~~------~~----------~~~~~~~~~~~~~a~~~~--p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~ 139 (270)
+... .. ......+...+....... +.+|+||+++.. .
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~---------------------~ 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP---------------------W 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH---------------------H
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH---------------------H
Confidence 1100 00 011122333344333444 889999998641 1
Q ss_pred HHHhhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCC-CCHHHHHHHHHHhhccCCCCCCCCHHHHHHHcCCC
Q 024249 140 LLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN-PNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA 218 (270)
Q Consensus 140 ~l~~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~ 218 (270)
.+..+ ..+..||+||.+........ .....+.++. .+.++-.++|..+.............+|++.+.|
T Consensus 250 ~~~~~-----~~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g- 319 (1249)
T 3sfz_A 250 VLKAF-----DNQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKG- 319 (1249)
T ss_dssp HHTTT-----CSSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTT-
T ss_pred HHHhh-----cCCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCC-
Confidence 12222 24567999998765432211 2234577775 7888888888876533221112235678888876
Q ss_pred CHHHHH
Q 024249 219 SGAELK 224 (270)
Q Consensus 219 ~~~dl~ 224 (270)
.|--|+
T Consensus 320 lPLal~ 325 (1249)
T 3sfz_A 320 SPLVVS 325 (1249)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 455454
No 192
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.53 E-value=3.9e-07 Score=75.18 Aligned_cols=38 Identities=37% Similarity=0.465 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEEcc
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSG 79 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i~~ 79 (270)
|++++..++|.||||+||||++..++.. .+.++++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6788999999999999999998888752 3455666544
No 193
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.53 E-value=2.1e-07 Score=76.17 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
.++|..+.|.||||+|||||+++|++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56789999999999999999999998643
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.51 E-value=1.1e-07 Score=82.57 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=68.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCeEEEEcchhH------HHh--hhc----------------
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGSEL------VQK--YIG---------------- 88 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---------~~~~i~i~~~~~------~~~--~~~---------------- 88 (270)
|++++..++|+||||+|||+++..++... +.++++++...- ... ..+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 68889999999999999999999998753 456777765531 000 000
Q ss_pred hhh---HHHHHHHHHHHh-cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 89 EGS---RMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 89 ~~~---~~~~~~~~~a~~-~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
..+ ..+..+...... ..+.+|+||.+..+....... .+........+.+++..+..+....+++||++.+....
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG--RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT--TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 011 112233333444 678999999999886432110 01111112234444444433333446788888765443
No 195
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.51 E-value=1.5e-07 Score=82.31 Aligned_cols=122 Identities=14% Similarity=0.160 Sum_probs=67.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---------cCCeEEEEcchhH------HHh--hhc----------------
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH---------TDCTFIRVSGSEL------VQK--YIG---------------- 88 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---------~~~~~i~i~~~~~------~~~--~~~---------------- 88 (270)
|++++..++|+||||+|||+|+..++.. .+.++++++.... ... ..+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 6888999999999999999999999975 2456777765431 100 000
Q ss_pred hhh---HHHHHHHHHHHh--cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 89 EGS---RMVRELFVMARE--HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 89 ~~~---~~~~~~~~~a~~--~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
..+ ..+..+...... ..+.+|+||.+..+....... .+........+.+++..+..+....+++||++.+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG--GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 011 111222233444 678999999999887432110 0110111122344444443333445788888877554
Q ss_pred Cc
Q 024249 164 IL 165 (270)
Q Consensus 164 ~l 165 (270)
..
T Consensus 276 ~~ 277 (343)
T 1v5w_A 276 DP 277 (343)
T ss_dssp --
T ss_pred cC
Confidence 43
No 196
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.50 E-value=1.5e-07 Score=87.00 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=73.7
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchh----HHHh------------h----------h--ch
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE----LVQK------------Y----------I--GE 89 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~----~~~~------------~----------~--~~ 89 (270)
.++.++..++|.||||+|||||++.+++.. +...+++...+ +... . + -.
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 378899999999999999999999999742 23344443221 1100 0 0 02
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 90 GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 90 ~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
.++..+.+++.+...+|.+|++|=+..+... ....+.+..+.+++..+. +.++++|+++|+.
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~-------~~~~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAIDSLSALARG-------VSNNAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSS-------SCHHHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcChHHHHhh-------CChHHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 3456778888888899999999943333221 111336667777777763 3478999999987
No 197
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.47 E-value=4.7e-07 Score=79.70 Aligned_cols=120 Identities=21% Similarity=0.350 Sum_probs=66.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEEcchhHHH----hhhc-----------hhhHHHHHHHHH-HH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELVQ----KYIG-----------EGSRMVRELFVM-AR 102 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i~~~~~~~----~~~~-----------~~~~~~~~~~~~-a~ 102 (270)
|++++..++|+||||+|||+|+..++.. .+..+++++...-.. ...+ .....+...+.. ..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 5788899999999999999999998864 345666665442111 1111 011122222222 23
Q ss_pred hcCCeEEEEcCCCcccCcc-cCCCCCCCCh---HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 103 EHAPSIIFMDEIDSIGSAR-MESGSGNGDS---EVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 103 ~~~p~il~lDeid~l~~~~-~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
...+.+|+||.+..+.+.. .+. ...+. ...+.+.+++..+.......+++||++.+-..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g--~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~ 212 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEG--DMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE 212 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC----------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred cCCCCEEEEeChHHhcccccccc--ccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 4678999999999987522 110 00110 11233445555554333455777887766433
No 198
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.47 E-value=4.7e-08 Score=94.37 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcC---CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 94 VRELFVMAREHA---PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 94 ~~~~~~~a~~~~---p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.+-.++++.... |.|++||| |+.+.|......+.+++..+. ..+.+||++||+.+.+
T Consensus 737 QRv~LAraL~~~p~~p~lLILDE-----------PTsGLD~~~~~~l~~lL~~L~----~~G~tVIvisHdl~~i 796 (842)
T 2vf7_A 737 QRIKLATELRRSGRGGTVYVLDE-----------PTTGLHPADVERLQRQLVKLV----DAGNTVIAVEHKMQVV 796 (842)
T ss_dssp HHHHHHHTTSSCCSSCEEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHHHH
Confidence 344444555564 79999999 899999999999999998873 3478899999997655
No 199
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.47 E-value=5.1e-08 Score=77.99 Aligned_cols=25 Identities=40% Similarity=0.670 Sum_probs=21.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
+..+.|.||||+|||||++.+++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 3568999999999999999999854
No 200
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.46 E-value=9.8e-07 Score=77.75 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=39.9
Q ss_pred cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 104 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 104 ~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
..|.++++|| |+++.|+.....+.+++..+. ..+.+||++||+++.
T Consensus 302 ~~p~~lllDE-----------pt~~LD~~~~~~~~~~l~~l~----~~g~tvi~itH~~~~ 347 (365)
T 3qf7_A 302 GRLDAFFIDE-----------GFSSLDTENKEKIASVLKELE----RLNKVIVFITHDREF 347 (365)
T ss_dssp TTCCEEEEES-----------CCTTSCHHHHHHHHHHHHGGG----GSSSEEEEEESCHHH
T ss_pred CCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH----hCCCEEEEEecchHH
Confidence 6899999999 899999999999999998873 347889999999754
No 201
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.45 E-value=1.3e-07 Score=75.18 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=36.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
.+.+|..++|.|||||||||+++.|++.++.+.+.+++.++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 467888999999999999999999999988888888877653
No 202
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.45 E-value=2.2e-07 Score=90.48 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHhcC---CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 91 SRMVRELFVMAREHA---PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 91 ~~~~~~~~~~a~~~~---p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+++.+-.++++.... |.+++||| |++++|......+.++|..+. ..+.+||+++|+++.+
T Consensus 809 GErQRV~LAraL~~~p~~p~LLILDE-----------PTsGLD~~~~~~L~~lL~~L~----~~G~TVIvI~HdL~~i 871 (916)
T 3pih_A 809 GEAQRIKLASELRKRDTGRTLYILDE-----------PTVGLHFEDVRKLVEVLHRLV----DRGNTVIVIEHNLDVI 871 (916)
T ss_dssp HHHHHHHHHHHHTSCCCSSEEEEEES-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHH
Confidence 345566667777654 57999999 899999999999999998873 2467899999997644
No 203
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.41 E-value=5.5e-07 Score=86.33 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=56.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCeE------EE----------EcchhHHHhhhchhhHHHHHHHHHHH--hc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHT---DCTF------IR----------VSGSELVQKYIGEGSRMVRELFVMAR--EH 104 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~------i~----------i~~~~~~~~~~~~~~~~~~~~~~~a~--~~ 104 (270)
+..++|+||||+||||++|++++-. ..+. .. +...+-......... .-+..+..+. ..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~-~e~~~la~il~~a~ 654 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFM-VEMEEVALILKEAT 654 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHH-HHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHH-HHHHHHHHHHHhcc
Confidence 7889999999999999999998621 1110 00 111110000000011 1111223333 67
Q ss_pred CCeEEEEcCCCcccCcccCCCCCCCChHHH-HHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 105 APSIIFMDEIDSIGSARMESGSGNGDSEVQ-RTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 105 ~p~il~lDeid~l~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.|+++++||+-. ++++.|.... ..+.+.+.. .+.++|++||+.+..
T Consensus 655 ~p~LlLLDEpgr--------GTs~lD~~~~~~~i~~~L~~-------~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 655 ENSLVLLDEVGR--------GTSSLDGVAIATAVAEALHE-------RRAYTLFATHYFELT 701 (765)
T ss_dssp TTEEEEEESTTT--------TSCHHHHHHHHHHHHHHHHH-------HTCEEEEECCCHHHH
T ss_pred CCCEEEEECCCC--------CCCCcCHHHHHHHHHHHHHh-------CCCEEEEEeCCHHHH
Confidence 899999999321 2445555443 344454433 357899999986543
No 204
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.41 E-value=4.3e-07 Score=94.11 Aligned_cols=132 Identities=18% Similarity=0.260 Sum_probs=81.6
Q ss_pred ChHHHHhc---CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHHhh----hc--------hhhHHHH
Q 024249 34 HPELFESL---GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKY----IG--------EGSRMVR 95 (270)
Q Consensus 34 ~~~~~~~~---~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~~~----~~--------~~~~~~~ 95 (270)
.+++-+-+ |+.++..++|.|+||+|||+|+..+|... +.++++++........ .+ ..+..+.
T Consensus 717 ~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~ 796 (2050)
T 3cmu_A 717 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 796 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHH
T ss_pred ChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHH
Confidence 44555555 58999999999999999999999999753 4468888775432221 12 0111234
Q ss_pred HHHHHHHh----cCCeEEEEcCCCcccC-cccCCCCCCCC-hHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 96 ELFVMARE----HAPSIIFMDEIDSIGS-ARMESGSGNGD-SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 96 ~~~~~a~~----~~p~il~lDeid~l~~-~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
.++..+.. ..|++|++|.++.+.. ...+...++.. ....+.+.+++..+..+....++.||++.|-....
T Consensus 797 ~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~ 872 (2050)
T 3cmu_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 872 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECT
T ss_pred HHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccc
Confidence 44444433 6899999999999876 32111111111 12233455655555555566788898888754433
No 205
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.4e-07 Score=85.48 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=27.7
Q ss_pred HhcCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 39 ESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 39 ~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
-++.+.+|..++|.||+|||||||+|+|++.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4566789999999999999999999999974
No 206
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.41 E-value=1.5e-06 Score=75.26 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=37.2
Q ss_pred cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 104 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 104 ~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
..|.++++|| |+++.|+.....+.+++..+. .+.+||++||+.+.
T Consensus 240 ~~~~~lllDE-----------p~~~LD~~~~~~l~~~l~~~~-----~~~~vi~~tH~~~~ 284 (322)
T 1e69_A 240 KPSPFYVLDE-----------VDSPLDDYNAERFKRLLKENS-----KHTQFIVITHNKIV 284 (322)
T ss_dssp SCCSEEEEES-----------CCSSCCHHHHHHHHHHHHHHT-----TTSEEEEECCCTTG
T ss_pred CCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHhc-----CCCeEEEEECCHHH
Confidence 4678999999 888999999999999998872 25679999999653
No 207
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.39 E-value=8.7e-07 Score=77.74 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=65.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEEcchh----HHHhhhc-----------hhhHHHHHHHH-HHH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSE----LVQKYIG-----------EGSRMVRELFV-MAR 102 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i~~~~----~~~~~~~-----------~~~~~~~~~~~-~a~ 102 (270)
|++++..++|+||||+|||||+..++.. .+..+++++... ......+ .....+...+. .+.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999864 345677776532 1111111 01122223332 233
Q ss_pred hcCCeEEEEcCCCcccCccc-CCCCCCCCh---HHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 103 EHAPSIIFMDEIDSIGSARM-ESGSGNGDS---EVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 103 ~~~p~il~lDeid~l~~~~~-~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
...+.+|+||.+..+..... +.. ..+. ...+.+.+++..+.......+++||++.+-..
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~--~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~ 201 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGE--IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 201 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred ccCCCEEEEcCHHHhcchhhhccc--cccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 56789999999998875221 100 0111 11123334444433222334677887766443
No 208
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.39 E-value=1.2e-05 Score=69.99 Aligned_cols=175 Identities=12% Similarity=0.113 Sum_probs=104.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CC---eEEEEcchhHHHhhhchhhHHHHHHHHHH----HhcCCeEEEEcCC
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---DC---TFIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEI 114 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~~p~il~lDei 114 (270)
.+..++|+||.|.||++.++.++... +. ..+.+++. ..+++++..+ .-....|+++||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 45679999999999999999998743 21 23333321 1233333333 3356789999997
Q ss_pred Cc-ccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC------CchhhhcCCCCcceEEEeCCCCHH
Q 024249 115 DS-IGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID------ILDQALLRPGRIDRKIEFPNPNEE 187 (270)
Q Consensus 115 d~-l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~------~l~~~l~r~~r~~~~i~~~~p~~~ 187 (270)
+. +. ......+...++.. ....++|++++.++ .+.+.+.+++ ..+++.+++..
T Consensus 86 ~~kl~------------~~~~~aLl~~le~p-----~~~~~~il~~~~~~~~~~~~k~~~~i~sr~---~~~~~~~l~~~ 145 (343)
T 1jr3_D 86 ENGPN------------AAINEQLLTLTGLL-----HDDLLLIVRGNKLSKAQENAAWFTALANRS---VQVTCQTPEQA 145 (343)
T ss_dssp SSCCC------------TTHHHHHHHHHTTC-----BTTEEEEEEESCCCTTTTTSHHHHHHTTTC---EEEEECCCCTT
T ss_pred CCCCC------------hHHHHHHHHHHhcC-----CCCeEEEEEcCCCChhhHhhHHHHHHHhCc---eEEEeeCCCHH
Confidence 76 41 12334444444432 23566666666543 3455666533 46889888888
Q ss_pred HHHHHHHHhhccCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024249 188 SRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 254 (270)
Q Consensus 188 ~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 254 (270)
+....++..++..... ....+..+++.+.| +.+++.+.++....++ ....|+.+|++..+...
T Consensus 146 ~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 146 QLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 8888888776654432 11224556666544 5566655555544432 23468888888776654
No 209
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.37 E-value=1.6e-06 Score=75.52 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=40.7
Q ss_pred HHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 98 FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 98 ~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
+..+....|.++++|| |+++.|+.....+.+++..+. ..+.+||++||+.+
T Consensus 265 ~a~~l~~~p~~lllDE-----------p~~~LD~~~~~~l~~~l~~~~----~~~~~vi~~sH~~~ 315 (339)
T 3qkt_A 265 MSLYLAGEISLLILDE-----------PTPYLDEERRRKLITIMERYL----KKIPQVILVSHDEE 315 (339)
T ss_dssp HHHHTTTTTCEEEEEC-----------CCTTCCHHHHHHHHHHHHHTG----GGSSEEEEEESCGG
T ss_pred HHHHhcCCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hcCCEEEEEEChHH
Confidence 4445556899999999 899999999999999998873 23457999999854
No 210
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.32 E-value=1.1e-06 Score=75.20 Aligned_cols=120 Identities=13% Similarity=0.223 Sum_probs=64.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCeEEEEcchhHH----Hhhhc------------hhhHHHHHHHHH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELV----QKYIG------------EGSRMVRELFVM 100 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-----~~~~i~i~~~~~~----~~~~~------------~~~~~~~~~~~~ 100 (270)
|++++ .++|+||||+|||||+-.++... +..+++++...-. ....+ ..++..-.+...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 57777 78999999999999987776432 5667777764311 11111 111110222222
Q ss_pred ---HHhcCCeEEEEcCCCcccCc-ccCCCCCCC---ChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 101 ---AREHAPSIIFMDEIDSIGSA-RMESGSGNG---DSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 101 ---a~~~~p~il~lDeid~l~~~-~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
....+|.+|++|-+..+.+. ..++..+.. +....+.+...+..+.++..+.++++|++-+-.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 24568999999999999753 221111100 001233444444444333345578787776643
No 211
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.32 E-value=4.9e-07 Score=84.89 Aligned_cols=109 Identities=14% Similarity=0.228 Sum_probs=59.9
Q ss_pred EEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHHH----------hhhc--------hhhHHHHHHHHHH----H-
Q 024249 49 VLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ----------KYIG--------EGSRMVRELFVMA----R- 102 (270)
Q Consensus 49 ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~~----------~~~~--------~~~~~~~~~~~~a----~- 102 (270)
+.|.||+|||||||+++|++.. +.+.+.+.+.++.. ..++ .....+.+.+..+ .
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~ 127 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG 127 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999853 34444443332100 0000 0001112112111 0
Q ss_pred ----------------hcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCC
Q 024249 103 ----------------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 164 (270)
Q Consensus 103 ----------------~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~ 164 (270)
...|.++++||..... .++++.|+.....+.+++..+- .....++++.++|+.+.
T Consensus 128 ~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~-----~~t~~LD~~~~~~i~~li~~~l--~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 128 EGMGISHELITLEISSRDVPDLTLIDLPGITR-----VAVGNQPADIGYKIKTLIKKYI--QRQETISLVVVPSNVDI 198 (608)
T ss_dssp SSSCCCSCCEEEEEEESSSCCEEEEECCC-----------CCSSCSHHHHHHHHHHHHT--TSSSCCEEEEEESSSCT
T ss_pred CccccchHHHHHHhcCCCCCceeEeeCCCccc-----cccCCCCHHHHHHHHHHHHHHH--hcCCCCceEEEeccchh
Confidence 1348899999943211 1266778878878888887742 23446777777877653
No 212
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.32 E-value=7.5e-07 Score=86.85 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcC---CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 93 MVRELFVMAREHA---PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 93 ~~~~~~~~a~~~~---p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+.+-.++.+.... |.+++||| |+++.|......+.++|..+. ..+.+||++||+++.+
T Consensus 869 kQRv~LAraL~~~p~~p~lLILDE-----------PTsGLD~~~~~~l~~lL~~L~----~~G~TVIvisHdl~~i 929 (993)
T 2ygr_A 869 AQRVKLASELQKRSTGRTVYILDE-----------PTTGLHFDDIRKLLNVINGLV----DKGNTVIVIEHNLDVI 929 (993)
T ss_dssp HHHHHHHHHHSSCCCSSEEEEEES-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHhCCCCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHHHH
Confidence 3455555666654 59999999 899999999999999998873 2478899999997654
No 213
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.31 E-value=1.4e-06 Score=72.98 Aligned_cols=28 Identities=39% Similarity=0.667 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
++..+++|+||||||||+++++||+...
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4456899999999999999999998654
No 214
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.31 E-value=9.3e-07 Score=85.95 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcC---CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc
Q 024249 93 MVRELFVMAREHA---PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 165 (270)
Q Consensus 93 ~~~~~~~~a~~~~---p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l 165 (270)
+.+-.++.+.... |.+++||| |+++.|......+.++|..+. ..+.+||++||+++.+
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDE-----------PTsGLD~~~~~~l~~lL~~L~----~~G~TVIvisHdl~~i 911 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDE-----------PTTGLHVDDIARLLDVLHRLV----DNGDTVLVIEHNLDVI 911 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHHHH
Confidence 3445555566654 59999999 999999999999999998873 3478899999997643
No 215
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.29 E-value=6.9e-07 Score=77.24 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=66.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---------------C----CeEEEEcchhH------HHh--hhc------
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---------------D----CTFIRVSGSEL------VQK--YIG------ 88 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---------------~----~~~i~i~~~~~------~~~--~~~------ 88 (270)
|++++..++|+||||+|||+++..++... + ..+++++...- ... ..+
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 67888999999999999999999998642 2 45666665431 100 000
Q ss_pred ----------hhh---HHHHHHHHHHHh-cCCeEEEEcCCCcccCcccCCCCCCCCh-HHHHHHHHHHHhhcCCcCCCCe
Q 024249 89 ----------EGS---RMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDS-EVQRTMLELLNQLDGFEASNKI 153 (270)
Q Consensus 89 ----------~~~---~~~~~~~~~a~~-~~p~il~lDeid~l~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~~~ 153 (270)
..+ ..+..+...... ..+.+|+||.+..+.....+ +..+. .....+.+++..+..+....++
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~---~~~~~~~r~~~~~~~~~~L~~la~~~~~ 250 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYT---GRGKLAERQQKLGRHMATLNKLADLFNC 250 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCC---CTTSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 001 112223333344 67899999999988643211 01111 1122344444444433344567
Q ss_pred EEEEEeCC
Q 024249 154 KVLMATNR 161 (270)
Q Consensus 154 ~vi~tt~~ 161 (270)
+||++.+-
T Consensus 251 ~vi~~nq~ 258 (322)
T 2i1q_A 251 VVLVTNQV 258 (322)
T ss_dssp EEEEEECE
T ss_pred EEEEECce
Confidence 78887654
No 216
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.28 E-value=2.8e-06 Score=66.51 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=31.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
+..|+|+|+|||||||+++.++..++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4678999999999999999999999888887665443
No 217
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=4.7e-07 Score=72.73 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=30.0
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
+|.+.++..|+|.|||||||||+++.+++.++.+++..
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34566788999999999999999999999998887654
No 218
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.27 E-value=8.1e-06 Score=87.92 Aligned_cols=139 Identities=21% Similarity=0.275 Sum_probs=86.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH-hcCCeEEEEcchhHHHhhhchhhHHHHHHHHHH----H------------hcCCe
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----R------------EHAPS 107 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a----~------------~~~p~ 107 (270)
.+..+||+||+|||||++++.... ..+..++.++++.-.+ ...+...+..- . ..+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 467799999999999988765544 4455667777654221 12222233211 0 12335
Q ss_pred EEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCc-------CCCCeEEEEEeCCC-----CCchhhhcCCCCc
Q 024249 108 IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-------ASNKIKVLMATNRI-----DILDQALLRPGRI 175 (270)
Q Consensus 108 il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-------~~~~~~vi~tt~~~-----~~l~~~l~r~~r~ 175 (270)
|+|+||++.-. +...+.......+.++++.-.-+. .-.++.+|+|+|.+ ..+++++.| ||
T Consensus 1377 VlFiDDiNmp~------~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1377 VVFCDEINLPS------TDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp EEEETTTTCCC------CCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred EEEecccCCCC------ccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 99999987511 111222344556666665421011 11357789998876 458889988 77
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhc
Q 024249 176 DRKIEFPNPNEESRLDILKIHSR 198 (270)
Q Consensus 176 ~~~i~~~~p~~~~r~~il~~~~~ 198 (270)
. .+.++.|+.+....|+..+..
T Consensus 1449 ~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 P-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp C-EEECCCCCHHHHHHHHHHHHH
T ss_pred e-EEEeCCCCHHHHHHHHHHHHH
Confidence 4 489999999999999876543
No 219
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.27 E-value=1e-05 Score=69.36 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=45.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHH-------Hhhh-------------chhhHHHHHHH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV-------QKYI-------------GEGSRMVRELF 98 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~-------~~~~-------------~~~~~~~~~~~ 98 (270)
...++..++++||+|+||||++..+|+.. +..+..+++.... ..+. +.........+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 34567889999999999999999999743 3334333332110 0010 01112233456
Q ss_pred HHHHhcCCeEEEEcCC
Q 024249 99 VMAREHAPSIIFMDEI 114 (270)
Q Consensus 99 ~~a~~~~p~il~lDei 114 (270)
..+....|.++++|+.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 6677788999999983
No 220
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.25 E-value=2.5e-05 Score=72.44 Aligned_cols=168 Identities=17% Similarity=0.213 Sum_probs=96.7
Q ss_pred cCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHH----hcCC---eEEEEcchh-----H
Q 024249 15 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH----HTDC---TFIRVSGSE-----L 82 (270)
Q Consensus 15 ~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~----~~~~---~~i~i~~~~-----~ 82 (270)
+|.++.+++|.+.+... +-.....+.|+|+.|+||||||+.+++ .... ..++++.+. .
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 59999999999998542 112357789999999999999999995 2221 223333221 1
Q ss_pred ---HHhh---hch-------------hhHHHHHHHHHHHhcC-CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHH
Q 024249 83 ---VQKY---IGE-------------GSRMVRELFVMAREHA-PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 142 (270)
Q Consensus 83 ---~~~~---~~~-------------~~~~~~~~~~~a~~~~-p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~ 142 (270)
.... .+. ....+...+....... +.+|+||+++.. . .+ .+.
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~--------------~---~~-~~~- 261 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE--------------E---TI-RWA- 261 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH--------------H---HH-HHH-
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc--------------h---hh-ccc-
Confidence 1110 010 0112344455555665 899999997641 0 11 111
Q ss_pred hhcCCcCCCCeEEEEEeCCCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHHhhccCCCCCCCC----HHHHHHHcCCC
Q 024249 143 QLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID----LKKIAEKMNGA 218 (270)
Q Consensus 143 ~l~~~~~~~~~~vi~tt~~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~ 218 (270)
.. .+..||+||.+..... . .+.....+.++..+.++-.++|..+...... ..+ ...|++.+.|
T Consensus 262 ~~------~gs~ilvTTR~~~v~~-~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~G- 328 (549)
T 2a5y_B 262 QE------LRLRCLVTTRDVEISN-A---ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSG- 328 (549)
T ss_dssp HH------TTCEEEEEESBGGGGG-G---CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTT-
T ss_pred cc------CCCEEEEEcCCHHHHH-H---cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCC-
Confidence 11 3567889998643222 1 1123456889999999999999877432211 112 3456666655
Q ss_pred CHHHHH
Q 024249 219 SGAELK 224 (270)
Q Consensus 219 ~~~dl~ 224 (270)
.|--|+
T Consensus 329 lPLAl~ 334 (549)
T 2a5y_B 329 NPATLM 334 (549)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 444443
No 221
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.25 E-value=5.6e-06 Score=75.02 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=31.4
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh----cCCeEEEEcc
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSG 79 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~----~~~~~i~i~~ 79 (270)
.|+.++..++|.|+||+|||||+..++.. .+.++++++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 47899999999999999999999999863 2445666543
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.23 E-value=2.5e-07 Score=82.57 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
+..+.|.||||+|||||+++|++
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 34799999999999999999998
No 223
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.21 E-value=9.6e-07 Score=77.68 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=51.8
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchh-HHH----h---hhc-h-------hhHHHHHHHHHH
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE-LVQ----K---YIG-E-------GSRMVRELFVMA 101 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~-~~~----~---~~~-~-------~~~~~~~~~~~a 101 (270)
++.+.++..++|.||+|||||||++++++.. ..+.+.+.+.. +.. . +.. + ....++..+..+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSC 248 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHH
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHH
Confidence 4557789999999999999999999999854 35666665421 100 0 000 0 122356777788
Q ss_pred HhcCCeEEEEcCC
Q 024249 102 REHAPSIIFMDEI 114 (270)
Q Consensus 102 ~~~~p~il~lDei 114 (270)
....|..++++|+
T Consensus 249 l~~~pd~~l~~e~ 261 (361)
T 2gza_A 249 LRMKPTRILLAEL 261 (361)
T ss_dssp TTSCCSEEEESCC
T ss_pred HhcCCCEEEEcCc
Confidence 8889999999994
No 224
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.17 E-value=1.1e-06 Score=68.14 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=33.3
Q ss_pred HhcCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCeEEEEcchh
Q 024249 39 ESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSE 81 (270)
Q Consensus 39 ~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~i~~~~ 81 (270)
-+|.+.++..+.|.||+|+|||||+++|++.. ..+.+.+.+.+
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~ 69 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYT 69 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTT
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEe
Confidence 35678899999999999999999999999864 23445444443
No 225
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.15 E-value=1.2e-05 Score=68.95 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSG 79 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~ 79 (270)
+|..+.|.||+||||||+++.|++.. ..+-+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 57889999999999999999999742 334444444
No 226
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.14 E-value=6.7e-06 Score=68.53 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=33.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
...|..++|.|||||||||+++.++...+.+.+.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4567889999999999999999999988766777777665
No 227
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.14 E-value=3.3e-06 Score=86.64 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=52.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEEcchhHH----Hhhhch--------hhHHHHHHHHHH----H
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELV----QKYIGE--------GSRMVRELFVMA----R 102 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i~~~~~~----~~~~~~--------~~~~~~~~~~~a----~ 102 (270)
|+.++..++|+||||+|||||+..+|.. .+..+++++..... ....+. ....+.+++..+ .
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 5889999999999999999999999864 34456676654321 111110 011223334433 3
Q ss_pred hcCCeEEEEcCCCcccC
Q 024249 103 EHAPSIIFMDEIDSIGS 119 (270)
Q Consensus 103 ~~~p~il~lDeid~l~~ 119 (270)
...|++|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999874
No 228
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.14 E-value=7.8e-06 Score=67.34 Aligned_cols=37 Identities=32% Similarity=0.341 Sum_probs=28.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHH----hcCCeEEEEc
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAH----HTDCTFIRVS 78 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~----~~~~~~i~i~ 78 (270)
|++++..++|.|+||+|||+++-.+|. ..+.++++++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 678899999999999999999988763 2344555544
No 229
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.12 E-value=1.1e-05 Score=68.71 Aligned_cols=39 Identities=33% Similarity=0.534 Sum_probs=32.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
..|..++|.|||||||||+++.++.+.+.+.+.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 456789999999999999999999987656677776544
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.09 E-value=2.2e-05 Score=71.27 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=30.7
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEc
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVS 78 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~ 78 (270)
+|.+..|..++|.||+|+|||||++.|++.. ..+-+.+.
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 3456788899999999999999999999853 34445554
No 231
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.07 E-value=9.2e-06 Score=68.47 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 024249 48 GVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.++|.||||+|||||+++|++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999973
No 232
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.06 E-value=8.2e-06 Score=71.29 Aligned_cols=121 Identities=16% Similarity=0.278 Sum_probs=71.0
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcC--CeEEEEcchh---HHHh--hhc---------------h-hhHHHHHH
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSE---LVQK--YIG---------------E-GSRMVREL 97 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~~~i~i~~~~---~~~~--~~~---------------~-~~~~~~~~ 97 (270)
+.+.+|..+.|.||||+|||||++.|++... .+.+.+.+.. +... +.+ . ....+...
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~ 145 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAA 145 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHH
Confidence 3567899999999999999999999999654 4455554422 1110 000 0 01111111
Q ss_pred H---HHHH----hcCCeEEEEcCCCcccCc-------ccCCC-CCCCChHHHHHHHHHHHhhcCCcCCCCe-----EEEE
Q 024249 98 F---VMAR----EHAPSIIFMDEIDSIGSA-------RMESG-SGNGDSEVQRTMLELLNQLDGFEASNKI-----KVLM 157 (270)
Q Consensus 98 ~---~~a~----~~~p~il~lDeid~l~~~-------~~~~~-~~~~~~~~~~~l~~~l~~l~~~~~~~~~-----~vi~ 157 (270)
+ ..+. .....++++|.+..+... ..+.+ +.+.|+.....+.+++..+.. ...+. +|++
T Consensus 146 ~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~--~~~GsiT~~~tVl~ 223 (347)
T 2obl_A 146 FTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGP--APKGSITAIYTVLL 223 (347)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEE--CSSSEEEEEEEEEC
T ss_pred HHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhC--CCCCCeeeEEEEEE
Confidence 1 1111 122345667766554321 11222 467899999888998887742 13355 7888
Q ss_pred EeCCCC
Q 024249 158 ATNRID 163 (270)
Q Consensus 158 tt~~~~ 163 (270)
+||+.+
T Consensus 224 ~thdl~ 229 (347)
T 2obl_A 224 ESDNVN 229 (347)
T ss_dssp CSSCCC
T ss_pred eCCCCC
Confidence 999887
No 233
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.06 E-value=2.9e-06 Score=66.16 Aligned_cols=30 Identities=30% Similarity=0.668 Sum_probs=26.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEE
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFI 75 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i 75 (270)
+..++|+|||||||||+++.+++..+..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467999999999999999999998876544
No 234
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.06 E-value=3.1e-06 Score=67.93 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
.++..++|.|||||||||+++.|++..+. +.+++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 46788999999999999999999998854 45555543
No 235
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.05 E-value=2.1e-06 Score=69.99 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
+|.+.+|..+.|.||+|+|||||++.|++... +.+.+
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~ 53 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYF 53 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEE
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEE
Confidence 45678899999999999999999999998663 34444
No 236
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.05 E-value=2.4e-06 Score=68.43 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=24.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
.+.+|..+.|.|||||||||+++.|++..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45678899999999999999999999875
No 237
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.04 E-value=3.5e-06 Score=66.74 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=29.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
...+..|+|.|+|||||||+++.++..++..++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 45678899999999999999999999888776653
No 238
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.04 E-value=3e-06 Score=67.08 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=28.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh-cCCeEEE
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH-TDCTFIR 76 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~-~~~~~i~ 76 (270)
....+..|+|+|++||||||+++.++.. .+.+++.
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 3455678999999999999999999998 6665554
No 239
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.04 E-value=8.6e-06 Score=66.61 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=54.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchh-------HHHhhhch-----hhHHHHHHHHHHHh----cC
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE-------LVQKYIGE-----GSRMVRELFVMARE----HA 105 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~-------~~~~~~~~-----~~~~~~~~~~~a~~----~~ 105 (270)
++..++++||+|+||||++..++... +..++.+.... +... .|. .......+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 46778899999999999888877543 33444442111 1100 010 00112344444443 35
Q ss_pred CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC
Q 024249 106 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 163 (270)
Q Consensus 106 p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~ 163 (270)
+.+|+|||+..+. ... .+.+..+. +.++.||++.++.+
T Consensus 90 ~dvViIDEaQ~l~------------~~~----ve~l~~L~----~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 90 TKVIGIDEVQFFD------------DRI----CEVANILA----ENGFVVIISGLDKN 127 (223)
T ss_dssp CCEEEECSGGGSC------------THH----HHHHHHHH----HTTCEEEEECCSBC
T ss_pred CCEEEEecCccCc------------HHH----HHHHHHHH----hCCCeEEEEecccc
Confidence 8899999986541 122 22333331 12678899888654
No 240
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.02 E-value=1.8e-05 Score=68.16 Aligned_cols=39 Identities=28% Similarity=0.208 Sum_probs=31.2
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcc
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 79 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~ 79 (270)
.|+.++..++|.|+||+|||+++..+|... +.++++++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 478999999999999999999999998532 345666543
No 241
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.01 E-value=2.5e-05 Score=70.72 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=90.6
Q ss_pred CeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEe---------CC----CCCchhhhcCC
Q 024249 106 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMAT---------NR----IDILDQALLRP 172 (270)
Q Consensus 106 p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt---------~~----~~~l~~~l~r~ 172 (270)
|.|++|||+|.+- ..... .++..++.. ...+ +|++| .+ +..+++.+++
T Consensus 296 ~~VliIDEa~~l~------------~~a~~---aLlk~lEe~--~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s- 356 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------IECFT---YLHRALESS--IAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLD- 356 (456)
T ss_dssp ECEEEEESGGGCB------------HHHHH---HHHHHTTST--TCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHT-
T ss_pred ceEEEEechhhcC------------HHHHH---HHHHHhhcc--CCCE-EEEecCCccccccccccccccccCChhHHh-
Confidence 4699999998862 23333 344445421 2234 55455 32 6677888888
Q ss_pred CCcceEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 024249 173 GRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKM-NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 250 (270)
Q Consensus 173 ~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~-~g~~~~dl~~l~~~a~~~a~~~~~~~i~~~d~~~a 250 (270)
||.. +.+++|+.++..++++..+..... ..+..+..++..+ .| +++....+++.|...|..++...|+.+|+..|
T Consensus 357 -R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~ 433 (456)
T 2c9o_A 357 -RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEI 433 (456)
T ss_dssp -TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred -hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence 7765 699999999999999877653222 1222345677776 55 88888899999999998888889999999999
Q ss_pred HHHHh
Q 024249 251 VAKVM 255 (270)
Q Consensus 251 ~~~~~ 255 (270)
+.-++
T Consensus 434 ~~~~~ 438 (456)
T 2c9o_A 434 SELFY 438 (456)
T ss_dssp HHHSC
T ss_pred HHHhc
Confidence 87764
No 242
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.01 E-value=1.3e-05 Score=72.43 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=31.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh----cCCeEEEEcc
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSG 79 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~----~~~~~i~i~~ 79 (270)
-|+.++..++|.|+||+|||+++..+|.. .+.++++++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 37889999999999999999999999863 2456666544
No 243
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.00 E-value=4.3e-06 Score=67.05 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=31.6
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhH
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL 82 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~ 82 (270)
..++..+.|.|||||||||+++.|++.+ +...+++++..+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4578889999999999999999999876 444446666554
No 244
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.00 E-value=2.2e-05 Score=71.76 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=49.3
Q ss_pred CCe-EEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC--CchhhhcCCCCcceEEEe
Q 024249 105 APS-IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID--ILDQALLRPGRIDRKIEF 181 (270)
Q Consensus 105 ~p~-il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~--~l~~~l~r~~r~~~~i~~ 181 (270)
.|. +|++||+..++.. ....+.+++..+-.....-++.+|++|++++ .++..+.. -+...|.+
T Consensus 296 lP~ivlvIDE~~~ll~~------------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l 361 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMT------------VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAF 361 (512)
T ss_dssp CCEEEEEEETHHHHHHH------------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE
T ss_pred CCcEEEEEeCHHHHHhh------------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEE
Confidence 364 8999998665421 0112233333332222445899999999987 46665554 56777888
Q ss_pred CCCCHHHHHHHHHH
Q 024249 182 PNPNEESRLDILKI 195 (270)
Q Consensus 182 ~~p~~~~r~~il~~ 195 (270)
...+..+...++..
T Consensus 362 rv~s~~dsr~ilg~ 375 (512)
T 2ius_A 362 TVSSKIDSRTILDQ 375 (512)
T ss_dssp CCSSHHHHHHHHSS
T ss_pred EcCCHHHHHHhcCC
Confidence 88888888888753
No 245
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.00 E-value=3.7e-06 Score=66.30 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=28.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
+..|+|+||+||||||+++.++..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999998887754
No 246
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.99 E-value=1.1e-05 Score=72.13 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=44.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC--CeEEEEcchhHHHh-------hhc-hhhHHHHHHHHHHHhcCCeEEEEcCC
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQK-------YIG-EGSRMVRELFVMAREHAPSIIFMDEI 114 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~~~i~i~~~~~~~~-------~~~-~~~~~~~~~~~~a~~~~p~il~lDei 114 (270)
++..++|.||+||||||+++++++... .+.+.+....+... ... .........+..+....|.++++.|+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 567789999999999999999998653 23344333332110 001 11123445556667789999999985
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.99 E-value=4.4e-06 Score=67.46 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=30.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC-----CeEEEEcch
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGS 80 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~-----~~~i~i~~~ 80 (270)
.++..+.|.||||||||||+++|++... .+.+.+++.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 5788899999999999999999998653 566665543
No 248
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.98 E-value=6.4e-06 Score=70.59 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhccccChH--HHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchh
Q 024249 18 DQQIKEIKEVIELPIKHPE--LFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE 81 (270)
Q Consensus 18 ~~~~~~l~~~l~~~l~~~~--~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~ 81 (270)
+..++.+.+.+...+.... .--++.+.+|..++|.||+|+||||+++.||+.. ..+-+.+.+.+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 137 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 3344445555444332211 1124456788999999999999999999999843 34445554443
No 249
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.97 E-value=3.6e-06 Score=66.82 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=19.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
+..++++||+|+||||++-.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 56788999999999999866654
No 250
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.97 E-value=1.6e-06 Score=79.55 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=49.6
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchh-HHHh---h--------hchhhHHHHHHHHHHHhcCCeE
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE-LVQK---Y--------IGEGSRMVRELFVMAREHAPSI 108 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~-~~~~---~--------~~~~~~~~~~~~~~a~~~~p~i 108 (270)
+..+..+++.||+||||||+++++++.. +.+.+.+.+.. +... + .+.....+...+..+....|.+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 4567889999999999999999999864 45666665433 1100 0 0111123555666777889999
Q ss_pred EEEcCC
Q 024249 109 IFMDEI 114 (270)
Q Consensus 109 l~lDei 114 (270)
+++.|+
T Consensus 337 iivgEi 342 (511)
T 2oap_1 337 IIVGEV 342 (511)
T ss_dssp EEESCC
T ss_pred EEeCCc
Confidence 999996
No 251
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.97 E-value=9.4e-05 Score=61.78 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEEcchhHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELV 83 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i~~~~~~ 83 (270)
.+..|+|.|+|||||||+++.++.. .+..++.++...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 3567999999999999999999987 67777766665543
No 252
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.97 E-value=5.9e-06 Score=64.95 Aligned_cols=34 Identities=35% Similarity=0.599 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
..+..|+|+|+|||||||+++.++..++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4567799999999999999999999988776653
No 253
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.97 E-value=4.3e-05 Score=68.54 Aligned_cols=195 Identities=13% Similarity=0.188 Sum_probs=96.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhH----------HHhhhc----------hhhHHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL----------VQKYIG----------EGSRMVRELFVMA 101 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~----------~~~~~~----------~~~~~~~~~~~~a 101 (270)
+|..+++.||+|+||||++..+|..+ +..+..+++... .....+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999999643 444444433211 000000 1112234555666
Q ss_pred HhcCCeEEEEcCCCcccCcccCCCCCC--CChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCCCc-hh--hhcCCCCcc
Q 024249 102 REHAPSIIFMDEIDSIGSARMESGSGN--GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL-DQ--ALLRPGRID 176 (270)
Q Consensus 102 ~~~~p~il~lDeid~l~~~~~~~~~~~--~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~~l-~~--~l~r~~r~~ 176 (270)
....+.++++|..-. .. .+......+..+...+ ....+.+++.++.-... .. .+.....+.
T Consensus 176 ~~~~~DvvIIDTaGr----------~~~~~d~~lm~el~~i~~~~----~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~ 241 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR----------HGYGEETKLLEEMKEMYDVL----KPDDVILVIDASIGQKAYDLASRFHQASPIG 241 (433)
T ss_dssp TTTTCSEEEEEECCC----------SSSCCTTHHHHHHHHHHHHH----CCSEEEEEEEGGGGGGGHHHHHHHHHHCSSE
T ss_pred HhcCCCEEEEECCCC----------ccccCCHHHHHHHHHHHHhh----CCcceEEEEeCccchHHHHHHHHHhcccCCc
Confidence 666889999998422 22 4555555666655555 23455555554432222 11 121111111
Q ss_pred eEEEeCCCC----HHHHHHHHHHhhcc---CCC------CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Q 024249 177 RKIEFPNPN----EESRLDILKIHSRR---MNL------MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE------ 237 (270)
Q Consensus 177 ~~i~~~~p~----~~~r~~il~~~~~~---~~~------~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~~------ 237 (270)
. +.+..-+ ...-..+....-.. ... ...++.+.++.+.-|+ .|+..+++.|......+
T Consensus 242 g-VIlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~ 318 (433)
T 3kl4_A 242 S-VIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM--GDIESILEKVKGLEEYDKIQKKM 318 (433)
T ss_dssp E-EEEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCS--SHHHHHHHHHHHC----------
T ss_pred E-EEEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCC--chHHHHHHHHHHhhhHHHHHHHH
Confidence 1 2222222 22223333322110 001 1234456666665443 57777777665322111
Q ss_pred ---cCC--CCCHHHHHHHHHHHhh
Q 024249 238 ---RRI--HVTQEDFEMAVAKVMK 256 (270)
Q Consensus 238 ---~~~--~i~~~d~~~a~~~~~~ 256 (270)
..- .++.+||.+.++.+.+
T Consensus 319 ~k~~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 319 EDVMEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp ---------CCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHh
Confidence 112 6888999998888765
No 254
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.96 E-value=8.8e-05 Score=80.15 Aligned_cols=126 Identities=17% Similarity=0.275 Sum_probs=84.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHhhhchhhHHHHHHHHHHHhcCCeEEEEcCCCcccCcccCCC
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 125 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~ 125 (270)
..+..+.||+|||||.+++.+|+.++.+++.++|++-... ..+..+|.-+.. ..+-.++||++.+
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~-~GaW~cfDEfNrl-------- 668 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQ-CGAWGCFDEFNRL-------- 668 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHH-HTCEEEEETTTSS--------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhh-cCcEEEehhhhcC--------
Confidence 4556799999999999999999999999999999763221 223344444333 2467899998764
Q ss_pred CCCCChHHHHHHHHHHHhh-------------c-C--CcCCCCeEEEEEeCC----CCCchhhhcCCCCcceEEEeCCCC
Q 024249 126 SGNGDSEVQRTMLELLNQL-------------D-G--FEASNKIKVLMATNR----IDILDQALLRPGRIDRKIEFPNPN 185 (270)
Q Consensus 126 ~~~~~~~~~~~l~~~l~~l-------------~-~--~~~~~~~~vi~tt~~----~~~l~~~l~r~~r~~~~i~~~~p~ 185 (270)
+......+.+.+..+ . + +.-+....|++|.|. -..+++.+.. +| +.+.+..|+
T Consensus 669 ----~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd 741 (3245)
T 3vkg_A 669 ----EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPD 741 (3245)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCC
T ss_pred ----CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCC
Confidence 233444444433311 1 1 112335667888872 3578888887 66 459999999
Q ss_pred HHHHHHHH
Q 024249 186 EESRLDIL 193 (270)
Q Consensus 186 ~~~r~~il 193 (270)
.+...+|+
T Consensus 742 ~~~i~ei~ 749 (3245)
T 3vkg_A 742 REMIAQVM 749 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888775
No 255
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.96 E-value=6.4e-06 Score=64.35 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 75 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i 75 (270)
++..++|.|||||||||+++.+++..+..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 4678999999999999999999998765544
No 256
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.94 E-value=5.2e-06 Score=71.12 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=31.3
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
++.++++..+.|+||||||||||+++|++.. .+.+.
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~ 155 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVL 155 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEE
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEE
Confidence 5789999999999999999999999999877 44443
No 257
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.93 E-value=1.2e-05 Score=68.58 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.++..+++.||+|+||||++..+|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999974
No 258
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.92 E-value=5.5e-06 Score=68.69 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=25.6
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
+|.+.++..+.|.||+||||||+++.|++..+
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35577888899999999999999999998665
No 259
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.91 E-value=9.5e-06 Score=63.69 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhH
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL 82 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~ 82 (270)
.++..+.|.|++||||||+++.+++.+ +.+++.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 357789999999999999999999976 778887775544
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.90 E-value=8.1e-06 Score=63.32 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=27.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEEc
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 78 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~ 78 (270)
.|+|.||+||||||+++.++...+.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999887776544
No 261
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.90 E-value=3.7e-05 Score=66.54 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcch
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS 80 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~ 80 (270)
..+|..++|.||+|+||||+++.|++.. ..+-+.+.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 4678899999999999999999999843 3334444443
No 262
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.90 E-value=8.8e-06 Score=71.30 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=32.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcchh
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE 81 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~~ 81 (270)
++.+.+|..++|.||+|+||||+++.||+.. ..+-+.+.+.+
T Consensus 151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D 194 (359)
T 2og2_A 151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 194 (359)
T ss_dssp CCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc
Confidence 4556788999999999999999999999853 34445555443
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.87 E-value=7.7e-06 Score=65.50 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
+.+|..+.|.|||||||||+++.|++..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678899999999999999999999865
No 264
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.87 E-value=1e-05 Score=64.82 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=27.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
+..|+|.|++||||||+++.|++..+..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5679999999999999999999988776654
No 265
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.87 E-value=6.3e-06 Score=68.66 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=31.5
Q ss_pred cCCCC---CceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 41 LGIAQ---PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 41 ~~~~~---~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
+.+.+ +..|.|.|++||||||+++.+++.++.+++..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 34556 78899999999999999999999998876653
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.87 E-value=9e-06 Score=64.39 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=27.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
..++|.||||+||||+++.|++.. .+.+.+++.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~-~g~~~i~~d~~ 37 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL-DNSAYIEGDII 37 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS-SSEEEEEHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhccc-CCeEEEcccch
Confidence 468899999999999999999844 34466666554
No 267
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.86 E-value=4e-06 Score=68.79 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=21.1
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHH-Hhc
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVA-HHT 70 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia-~~~ 70 (270)
+|.+.+|..+.|.||+||||||+++.|+ +..
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4567788999999999999999999999 754
No 268
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.86 E-value=2.8e-05 Score=63.29 Aligned_cols=42 Identities=21% Similarity=0.448 Sum_probs=33.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~ 85 (270)
....++.|+|.|||||||+|.++.|+.+++.+ .++..++...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR~ 66 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLRA 66 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHHH
Confidence 45677889999999999999999999998765 4555565543
No 269
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.86 E-value=4.3e-05 Score=70.06 Aligned_cols=38 Identities=11% Similarity=-0.038 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc----CCeEEEEcc
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSG 79 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~----~~~~i~i~~ 79 (270)
|+.++..++|.|+||+|||+|+-.+|... +.++.+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 68889999999999999999999998642 445666544
No 270
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.85 E-value=0.00015 Score=61.87 Aligned_cols=90 Identities=23% Similarity=0.219 Sum_probs=54.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchh--------HHH--hhhc----------hhhHHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE--------LVQ--KYIG----------EGSRMVRELFVMA 101 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~--------~~~--~~~~----------~~~~~~~~~~~~a 101 (270)
++..+.++|++|+||||++..+|+.. +..+..+++.. +.. ...+ ......+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 67788899999999999999999742 33333333210 000 0000 1112235566666
Q ss_pred HhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhh
Q 024249 102 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 144 (270)
Q Consensus 102 ~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l 144 (270)
....+.+|++|+. |..+.|......+..+...+
T Consensus 177 ~~~~~D~viiDtp----------p~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 177 RLEARDLILVDTA----------GRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHTCCEEEEECC----------CCSSCCHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEeCC----------CCccccHHHHHHHHHHhhhc
Confidence 6677899999992 24445665566666665554
No 271
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.85 E-value=9e-06 Score=64.06 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 75 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i 75 (270)
.|..|+|.|+|||||||+++.++..++..++
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3567999999999999999999998876544
No 272
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.85 E-value=9.3e-06 Score=63.97 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=27.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
..|+|.|+|||||||+++.|+..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3589999999999999999999998876653
No 273
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.84 E-value=0.0001 Score=72.49 Aligned_cols=42 Identities=26% Similarity=0.243 Sum_probs=35.3
Q ss_pred cCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHH
Q 024249 15 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 15 ~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
+|.+..+++|.+.+... .....+.|+||.|+||||||+.++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 89999999999888641 2356789999999999999999985
No 274
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.84 E-value=1.2e-05 Score=62.88 Aligned_cols=29 Identities=38% Similarity=0.635 Sum_probs=26.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
.|+|.|||||||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999877664
No 275
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.84 E-value=0.00029 Score=57.38 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=19.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
-.+++.|++|+||||++-.+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34889999999999998888864
No 276
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.84 E-value=0.00015 Score=65.07 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHH----------Hhh----------hchhhHHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV----------QKY----------IGEGSRMVRELFVMA 101 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~----------~~~----------~~~~~~~~~~~~~~a 101 (270)
+|..+++.|++|+||||++..+|..+ +..+..+.+.... ... ...........+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998643 4444444433210 000 011233456677777
Q ss_pred HhcCCeEEEEcCC
Q 024249 102 REHAPSIIFMDEI 114 (270)
Q Consensus 102 ~~~~p~il~lDei 114 (270)
....++++++|..
T Consensus 179 ~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 KSKGVDIIIVDTA 191 (443)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhCCCCEEEEECC
Confidence 7777899999984
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.83 E-value=1e-05 Score=63.99 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
|..|+|.|+|||||||+++.++...+.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 5679999999999999999999988876554
No 278
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.83 E-value=1.2e-05 Score=64.44 Aligned_cols=34 Identities=35% Similarity=0.468 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
..|..|+|.|+|||||||+++.|+..++.+++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3456799999999999999999999888776554
No 279
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.83 E-value=4.9e-05 Score=65.96 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEEcc
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSG 79 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i~~ 79 (270)
|+.++..++|.|+||+|||+|+..+|.. .+.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 7899999999999999999999999864 3555555543
No 280
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.82 E-value=1.2e-05 Score=63.83 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
++..|+|.|++||||||+++.++..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 467899999999999999999999888776543
No 281
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.82 E-value=1.2e-05 Score=67.11 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=28.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
.++|.|||||||||+++.||+..+..++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999887776553
No 282
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.81 E-value=9.9e-06 Score=65.26 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
.++..+.|.||+||||||+++.|++..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999999765
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.81 E-value=1.2e-05 Score=63.46 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
.+..+.|.||||+|||||++.|++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999998643
No 284
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.80 E-value=9.7e-06 Score=64.99 Aligned_cols=27 Identities=37% Similarity=0.680 Sum_probs=22.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
.++..+.|.||||+|||||++.|++..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 357789999999999999999999854
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.80 E-value=1.2e-05 Score=62.86 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=26.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHH-hcCCeEEEEcchhH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSEL 82 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~-~~~~~~i~i~~~~~ 82 (270)
|..|+|.|+|||||||+++.++. ..+ +..++...+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHH
Confidence 35689999999999999999998 454 444444333
No 286
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.78 E-value=1.9e-05 Score=64.13 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
++..|+|.|+|||||||+++.|+..++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 456799999999999999999999988766543
No 287
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.78 E-value=1.4e-05 Score=65.39 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
..+..|+|.|++||||||+++.|+..++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3567899999999999999999999888766543
No 288
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.78 E-value=1.4e-05 Score=61.84 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=25.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
.|+|.|||||||||+++.+ ...+.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8788776654
No 289
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.78 E-value=1.2e-05 Score=63.12 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 75 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i 75 (270)
.+..|+|.|++||||||+++.++..++.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3567999999999999999999999888766
No 290
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.77 E-value=1.8e-05 Score=64.32 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=26.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
+..+.|.||+||||||+++.+++..+.+++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568999999999999999999988876553
No 291
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.77 E-value=1.5e-05 Score=61.82 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=27.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
..|+|.|++||||||+++.|+..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5689999999999999999999999887653
No 292
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.77 E-value=0.00038 Score=64.23 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=51.9
Q ss_pred eEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCCC--CchhhhcCCCCcceEEEeCCC
Q 024249 107 SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID--ILDQALLRPGRIDRKIEFPNP 184 (270)
Q Consensus 107 ~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~~--~l~~~l~r~~r~~~~i~~~~p 184 (270)
-+|++||+..++... .......+..+... ..+-++.+|++|.++. .++..++. -|...|.+...
T Consensus 345 ivvVIDE~~~L~~~~--------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV--------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEESCCTTHHHHT--------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred EEEEEeCHHHHhhhh--------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 589999998776421 12233334444443 3566999999999988 77776665 57778889888
Q ss_pred CHHHHHHHHH
Q 024249 185 NEESRLDILK 194 (270)
Q Consensus 185 ~~~~r~~il~ 194 (270)
+..+...|+.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 8888877774
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.76 E-value=1.6e-05 Score=62.75 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
+..|+|.|+|||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999998765
No 294
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.75 E-value=1.4e-05 Score=63.24 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=22.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
|..+.|.||||+||||+++.|++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999754
No 295
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.75 E-value=0.00023 Score=62.63 Aligned_cols=122 Identities=20% Similarity=0.304 Sum_probs=69.4
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh-----cCCeEEEEcch----h---HHHhh--------hch-hhHHHH---H
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSGS----E---LVQKY--------IGE-GSRMVR---E 96 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~-----~~~~~i~i~~~----~---~~~~~--------~~~-~~~~~~---~ 96 (270)
+.+.+|..++|+||+|+|||||++.|++. .++.++++-.. + +.... ..+ ...+.. .
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~ 248 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEM 248 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHH
Confidence 45778899999999999999999999873 34555544222 1 11000 000 111111 1
Q ss_pred HHHHH----HhcCCeEEEEcCCCcccC-------cccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 97 LFVMA----REHAPSIIFMDEIDSIGS-------ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 97 ~~~~a----~~~~p~il~lDeid~l~~-------~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
.+..| ......+|++|++..++. ...+.|+.+-++.....+..++..-........++.|.|.--+
T Consensus 249 alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv~ 325 (422)
T 3ice_A 249 VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 325 (422)
T ss_dssp HHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCSSSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECCS
T ss_pred HHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCCCCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEec
Confidence 11111 245678999999986653 2233344455565555555666554333345678888876654
No 296
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.75 E-value=1.9e-05 Score=65.43 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 75 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i 75 (270)
.+..++|.|||||||||+++.|+..++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4678999999999999999999987765443
No 297
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.74 E-value=1.8e-05 Score=65.51 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
.+|..|+|+|||||||||+++.|+...+...+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3677899999999999999999999887665543
No 298
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.74 E-value=1.7e-05 Score=63.12 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
.+..|+|.|++||||||+++.++..++..++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 35679999999999999999999998866554
No 299
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.74 E-value=5.8e-05 Score=65.62 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=25.9
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
+.+..+..+.|.||||+|||||++++++.
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45778889999999999999999999974
No 300
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.74 E-value=0.0001 Score=66.48 Aligned_cols=38 Identities=29% Similarity=0.213 Sum_probs=31.2
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcc
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 79 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~ 79 (270)
|+.++..++|.|+||+|||+++-.+|... +.++.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 78899999999999999999999988632 556666654
No 301
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.74 E-value=2.2e-05 Score=61.95 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
.+..|+|.|++||||||+++.++..++..++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 356799999999999999999999888665543
No 302
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.73 E-value=1.8e-05 Score=61.43 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=26.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
..|+|.|++||||||+++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999998877664
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.73 E-value=1.9e-05 Score=63.78 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
.+|..+.|+||+|+||||+++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4678899999999999999999998653
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.73 E-value=2.5e-05 Score=62.46 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
.+..|+|.|++||||||+++.++...+..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 456789999999999999999999887765543
No 305
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.72 E-value=7.1e-05 Score=59.93 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
...+..+.|.||+||||||+++.+++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567789999999999999999999854
No 306
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.72 E-value=2e-05 Score=63.32 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=27.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc-CCeEEE
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIR 76 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~ 76 (270)
+.++..+.|.|++||||||+++.|++.. +..++.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 4567789999999999999999999976 444443
No 307
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.71 E-value=2.7e-05 Score=64.83 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=27.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCeEE
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 75 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i 75 (270)
.++..|.|.||+||||||+++.|+..++..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 45678999999999999999999998876544
No 308
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.71 E-value=3.1e-05 Score=62.11 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=25.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
.+.|.||+||||||+++.+++ .+.++ ++...+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~--id~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPL--VDADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcc--cchHHHH
Confidence 578999999999999999998 55554 4554443
No 309
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.70 E-value=2.1e-05 Score=63.62 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=26.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
.|+|.|||||||||+++.|+.+.+..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999888776654
No 310
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.68 E-value=2.1e-05 Score=63.51 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
.|+|.|||||||||+++.++...+..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999888776654
No 311
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.67 E-value=2.2e-05 Score=62.84 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
.|.|.|++||||||+++.|++ .+.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 488999999999999999999 77665543
No 312
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.67 E-value=2.4e-05 Score=63.61 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 75 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i 75 (270)
.+..|+|.|||||||||+++.|+..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4567999999999999999999999886544
No 313
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.67 E-value=4e-05 Score=69.48 Aligned_cols=56 Identities=27% Similarity=0.397 Sum_probs=31.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 2 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
|+++++|.+|+++- +.|.+.+...+.. +.. ....++|.|++|||||+++.+++..+
T Consensus 14 ~~~~~~p~~~~~Ln--~~Q~~av~~~~~~-i~~----------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 14 LVPRGSHMTFDDLT--EGQKNAFNIVMKA-IKE----------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -------CCSSCCC--HHHHHHHHHHHHH-HHS----------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccccCCCccccCC--HHHHHHHHHHHHH-Hhc----------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67788888888763 3344444333322 111 12378999999999999999998753
No 314
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.66 E-value=4e-05 Score=62.88 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
.+..|+|.|++||||||+++.|+..++..++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 456799999999999999999999998766553
No 315
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.66 E-value=2.3e-05 Score=63.58 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=27.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
+..|+|.|+|||||||+++.|+..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45789999999999999999999998776654
No 316
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.65 E-value=2.8e-05 Score=60.07 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=26.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
.|+|.|++||||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999988877664
No 317
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.65 E-value=3.6e-05 Score=62.13 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=28.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
.|+|.|||||||+|.++.|+.+.+.+.+ +..++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHHH
Confidence 4789999999999999999999977654 4455543
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.64 E-value=3.3e-05 Score=62.00 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=26.0
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
..++..++|.|||||||||+++.|+...+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56788899999999999999999998764
No 319
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.63 E-value=0.00014 Score=70.14 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=38.4
Q ss_pred CCcccccCcHHHHHHHHHHhhcccc--ChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHHH
Q 024249 9 STYDMIGGLDQQIKEIKEVIELPIK--HPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 9 ~~~~~i~G~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.+|++++-.+...+.+.+.-..|.. ...+... +..+..+++.||+||||||++..++.
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4577776666666666665555542 2222222 33467899999999999998887764
No 320
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.61 E-value=4.4e-05 Score=61.62 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcC----CeEEEEcchhH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHHTD----CTFIRVSGSEL 82 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~----~~~i~i~~~~~ 82 (270)
.+.++..++|.|++||||||+++.+++.++ .+++.+++..+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 356788899999999999999999998653 34777775544
No 321
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.61 E-value=3.2e-05 Score=66.48 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
+.+|..+.|.||||||||||++.|++..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 5778889999999999999999999853
No 322
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.61 E-value=4.9e-05 Score=60.65 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc-CCeEEEEc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVS 78 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~i~ 78 (270)
.+..|.|.|++||||||+++.++..+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 46789999999999999999999987 45565543
No 323
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.61 E-value=4.2e-05 Score=61.25 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=25.4
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
++...+++.+.|.||+|+|||||++.|++...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445678899999999999999999998654
No 324
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.60 E-value=0.00034 Score=62.48 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCeEE
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 75 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i 75 (270)
..+..|+|+|+|||||||+++.++...+..++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 45677999999999999999999998865443
No 325
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.58 E-value=5.5e-05 Score=62.19 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
.+..+.|.||+||||||+++.|++.++..++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 35679999999999999999999998766543
No 326
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.57 E-value=3.9e-05 Score=66.76 Aligned_cols=49 Identities=18% Similarity=0.387 Sum_probs=35.4
Q ss_pred cCcHHHHHHHHHHhhccccChHHHHhcCCCCCc--eEEEEcCCCchHHHHHHHHHHhcCCeE
Q 024249 15 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPK--GVLLYGPPGTGKTLLARAVAHHTDCTF 74 (270)
Q Consensus 15 ~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~--~ilL~Gp~GtGKTtl~~~ia~~~~~~~ 74 (270)
+.++...+.+.+.+...+ .++. .++|+||+|+||||++++|++.++.++
T Consensus 2 ~~~~~L~~~il~~l~~~i-----------~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI-----------EDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT-----------TTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh-----------ccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 455666666666665432 3333 499999999999999999998766554
No 327
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.56 E-value=5.2e-05 Score=60.37 Aligned_cols=29 Identities=14% Similarity=0.488 Sum_probs=25.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
.|.|.|++||||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999988876553
No 328
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.56 E-value=5.3e-05 Score=65.25 Aligned_cols=34 Identities=41% Similarity=0.691 Sum_probs=29.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 79 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~ 79 (270)
+..++|+||+||||||+++.+|...+..++..+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 3468999999999999999999999888777754
No 329
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.53 E-value=6.7e-05 Score=59.71 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
.+..|.|.|++||||||+++.|+.. +.+++ +...+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~ 42 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALA 42 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHH
Confidence 4567999999999999999999998 65544 444443
No 330
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.53 E-value=9.8e-05 Score=58.16 Aligned_cols=40 Identities=30% Similarity=0.325 Sum_probs=30.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhH
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL 82 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~ 82 (270)
..++..++|.|++||||||+++.++..+ +..+..+++..+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3467889999999999999999999865 333555554443
No 331
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.53 E-value=7.3e-05 Score=58.98 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=26.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc---CCeEEEEc
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVS 78 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~ 78 (270)
.|+|.|++||||||+++.++..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999976 77777654
No 332
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.52 E-value=7.1e-05 Score=67.34 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=72.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCeEEEEcch---hHHHh---------------hhchh----hHH--H
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS---ELVQK---------------YIGEG----SRM--V 94 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~~--~~~~i~i~~~---~~~~~---------------~~~~~----~~~--~ 94 (270)
+.+.+|..+.|.||||||||||++.|++.. +.+.+.+.+. ++... +..+. ... .
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v 231 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQG 231 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHH
Confidence 457789999999999999999999999864 4566666665 33220 01110 000 0
Q ss_pred HHHH-HHH---H-hcCCeEEEEcCCCcccCcc-------cCCC-CCCCChHHHHHHHHHHHhhcCCcCCCCe-----EEE
Q 024249 95 RELF-VMA---R-EHAPSIIFMDEIDSIGSAR-------MESG-SGNGDSEVQRTMLELLNQLDGFEASNKI-----KVL 156 (270)
Q Consensus 95 ~~~~-~~a---~-~~~p~il~lDeid~l~~~~-------~~~~-~~~~~~~~~~~l~~~l~~l~~~~~~~~~-----~vi 156 (270)
.... ..+ . .......++|.+..+.... .+.+ +++.|+.....+.+++..+.......+. +|+
T Consensus 232 ~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVl 311 (438)
T 2dpy_A 232 AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVL 311 (438)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEE
Confidence 0000 001 1 1233466778765443211 1111 5678888888888888877421002243 888
Q ss_pred EEeCCCC
Q 024249 157 MATNRID 163 (270)
Q Consensus 157 ~tt~~~~ 163 (270)
++||+.+
T Consensus 312 v~tHdl~ 318 (438)
T 2dpy_A 312 TEGDDQQ 318 (438)
T ss_dssp CSSSCSC
T ss_pred EeCCCcc
Confidence 9999987
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.52 E-value=5.2e-05 Score=60.74 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=24.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCC
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDC 72 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~ 72 (270)
+..|+|.|++||||||+++.|+..++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 567899999999999999999997665
No 334
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.51 E-value=6.1e-05 Score=60.85 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=26.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 77 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i 77 (270)
.|+|.|+|||||||+++.|+...+..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999887766554
No 335
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.50 E-value=0.00022 Score=61.49 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=25.1
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
+...++..++++||+|+||||++..+|..
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567888999999999999999999974
No 336
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.48 E-value=6.5e-05 Score=64.43 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
..+..+.|.||+|||||||++.|++...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678899999999999999999998643
No 337
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.48 E-value=2.9e-05 Score=70.55 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=33.2
Q ss_pred hcCCCCCceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH
Q 024249 40 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL 82 (270)
Q Consensus 40 ~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~ 82 (270)
+|.+.+ ..+.|.||||||||||+++|++. +..+.+.+++.++
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 355777 89999999999999999999984 4456666666554
No 338
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.48 E-value=7.9e-05 Score=60.70 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=25.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
.|+|.|++||||||+++.|+..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 47899999999999999999988765544
No 339
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.48 E-value=4.2e-05 Score=60.28 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=25.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcC---CeEEEEcchh
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSE 81 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~---~~~i~i~~~~ 81 (270)
.|+|.|+|||||||+++.|+..++ ..+..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 588999999999999999998764 2344544333
No 340
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.47 E-value=5.9e-05 Score=66.24 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=28.8
Q ss_pred HhcCCCC--CceEEEEcCCCchHHHHHHHHHHhcCCe
Q 024249 39 ESLGIAQ--PKGVLLYGPPGTGKTLLARAVAHHTDCT 73 (270)
Q Consensus 39 ~~~~~~~--~~~ilL~Gp~GtGKTtl~~~ia~~~~~~ 73 (270)
-++.+.+ +..+.|.||||||||||+++|++.....
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3445666 8889999999999999999999976543
No 341
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.47 E-value=0.0001 Score=68.57 Aligned_cols=34 Identities=32% Similarity=0.345 Sum_probs=25.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh---cCCeEEEEcc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSG 79 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i~~ 79 (270)
+..++|+|||||||||++++++.. .+..+.....
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 467899999999999999999863 3445554433
No 342
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.47 E-value=9.9e-05 Score=59.68 Aligned_cols=31 Identities=32% Similarity=0.297 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
.+..|.|.|++||||||+++.++. .+.+++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 356789999999999999999998 6655443
No 343
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.47 E-value=8.9e-05 Score=58.68 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=25.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc---CCeEEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHT---DCTFIRV 77 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i 77 (270)
.|.|.|++||||||+++.++..+ +.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 47899999999999999999987 7777654
No 344
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.47 E-value=7e-05 Score=59.76 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=28.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 83 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~ 83 (270)
...|.|+|++||||||+++.++..++.+++. ...+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~ 47 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIG 47 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHH
Confidence 3458899999999999999999987776654 44443
No 345
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.47 E-value=0.00011 Score=60.42 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
..+..|.|.|++||||||+++.+++.++.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 466789999999999999999999988876554
No 346
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.45 E-value=5.2e-05 Score=67.77 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=26.0
Q ss_pred hcCCCCCce--EEEEcCCCchHHHHHHHHHHh
Q 024249 40 SLGIAQPKG--VLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 40 ~~~~~~~~~--ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
++.+.+|.. +.|.||||+|||||+++|++.
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 456888888 999999999999999999974
No 347
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.44 E-value=0.00011 Score=58.79 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=26.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
.|.|.|++||||||+++.+++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 68899999999999999999998877665
No 348
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.43 E-value=3.2e-05 Score=62.11 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
.+..|+|.|++||||||+++.++..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999864
No 349
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.42 E-value=6.1e-05 Score=59.06 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
+.++ ..+|+||+|+||||++++|+..+.
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 4444 788999999999999999987543
No 350
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.41 E-value=0.00014 Score=60.43 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCe
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCT 73 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~ 73 (270)
.+..|.|.|++||||||+++.|+..++.+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 45679999999999999999999987765
No 351
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.38 E-value=0.00011 Score=63.50 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
.+..|+|.||+|||||+|+..||...+..++..+.-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 345789999999999999999999998777765544
No 352
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.37 E-value=8.1e-05 Score=59.80 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
..|..|+|.|++||||||+++.++..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999864
No 353
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.36 E-value=0.00072 Score=55.57 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=27.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcch
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 80 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~ 80 (270)
..++++||+|+|||.++-.++...+...+.+...
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4589999999999999998888776666665544
No 354
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.35 E-value=0.0023 Score=50.93 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=56.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh---cCCeEEEE---cch------hHHHhhh-----------------chhhHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRV---SGS------ELVQKYI-----------------GEGSRMVRE 96 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i---~~~------~~~~~~~-----------------~~~~~~~~~ 96 (270)
...|++++++|.||||.|=.+|-. .+..+..+ .+. .+..... .........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 456889999999999999888753 24444443 221 2222220 001123344
Q ss_pred HHHHHHh----cCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 97 LFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 97 ~~~~a~~----~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
.+..+.. ...++|+|||+-....- +-.+ ...+.+++.. .....-||+|++.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~------g~l~---~~ev~~~l~~-----Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAY------DYLP---LEEVISALNA-----RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHT------TSSC---HHHHHHHHHT-----SCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccC------CCCC---HHHHHHHHHh-----CcCCCEEEEECCCC
Confidence 4444443 45789999997432111 0111 1234455542 33467899999875
No 355
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.32 E-value=0.00011 Score=63.28 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
..++|+|++|+||||+++.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999753
No 356
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.32 E-value=0.00015 Score=61.86 Aligned_cols=35 Identities=34% Similarity=0.549 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 79 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~ 79 (270)
.+..++|.||+|||||+|+..+|...+..++..+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 35678899999999999999999998877766544
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.32 E-value=0.00014 Score=62.63 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
.+..+.|.||+||||||++++|++..+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999999998653
No 358
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.31 E-value=0.00042 Score=64.10 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=32.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC--C--eEEEEcchhHH
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHTD--C--TFIRVSGSELV 83 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~~--~--~~i~i~~~~~~ 83 (270)
+.++..+.|.|+|||||||++++|++..+ . .+..+++..+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 45788899999999999999999998653 2 35457776654
No 359
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.28 E-value=0.00043 Score=55.08 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCchHH-HHHHHHHHh--cCCeEEEEcc
Q 024249 45 QPKGVLLYGPPGTGKT-LLARAVAHH--TDCTFIRVSG 79 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKT-tl~~~ia~~--~~~~~i~i~~ 79 (270)
.+...+++||.|+||| .|++++.+. .+..++.+..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 4677889999999999 788888763 3455666643
No 360
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.28 E-value=0.0002 Score=56.79 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=20.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcC
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
-|+|+||+|+|||||++.+.....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 389999999999999999987543
No 361
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.28 E-value=0.00022 Score=57.54 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=26.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
+..+.|.|++||||||+++.++..++.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 4568999999999999999999988876554
No 362
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.28 E-value=0.0002 Score=61.28 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=28.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 79 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~ 79 (270)
+..++|.||+|||||+|+..+|...+..++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 3468899999999999999999988766665543
No 363
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.27 E-value=0.00017 Score=59.10 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
..+..|.|.||+||||||+++.++..++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998765
No 364
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.26 E-value=0.00052 Score=54.57 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
++...+++||.|+||||.+-.++..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4677889999999999988877764
No 365
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.26 E-value=0.00019 Score=60.61 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=26.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 82 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~ 82 (270)
+..|+|.|++||||||+++.++ ..+.+++ +...+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~ 108 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHL 108 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHH
Confidence 5569999999999999999999 5666544 44444
No 366
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.26 E-value=0.0034 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVA 67 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia 67 (270)
.+..+++.||+||||||++..+.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 47889999999999999877665
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.26 E-value=0.00013 Score=56.96 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=26.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc--C---CeEEEEcchhH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHT--D---CTFIRVSGSEL 82 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~--~---~~~i~i~~~~~ 82 (270)
..+.|.|++|||||||++.|++.. . .+.+.+++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence 468899999999999999999853 2 57788777664
No 368
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.24 E-value=0.0005 Score=58.59 Aligned_cols=68 Identities=24% Similarity=0.218 Sum_probs=42.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhH-------HHhh---h----------chhhHHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL-------VQKY---I----------GEGSRMVRELFVMAR 102 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~-------~~~~---~----------~~~~~~~~~~~~~a~ 102 (270)
+..+++.|++|+||||++..+|... +..+..+++... ...+ . ......+...+..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6788899999999999999999643 344444443210 0000 0 011223345666666
Q ss_pred hcCCeEEEEcC
Q 024249 103 EHAPSIIFMDE 113 (270)
Q Consensus 103 ~~~p~il~lDe 113 (270)
.....++++|=
T Consensus 178 ~~~~D~ViIDT 188 (297)
T 1j8m_F 178 SEKMEIIIVDT 188 (297)
T ss_dssp HTTCSEEEEEC
T ss_pred hCCCCEEEEeC
Confidence 56778999998
No 369
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.23 E-value=0.0002 Score=57.23 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
.+.+++|.||+|+|||+|+..++.... .++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 467899999999999999999998765 4443
No 370
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.22 E-value=0.00019 Score=60.97 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=25.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc-CCeEEEEcchhH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSEL 82 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~-~~~~i~i~~~~~ 82 (270)
..|+|.|+|||||||+++.++... +. ..++...+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~--~~i~~D~~ 37 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDY 37 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCc--EEecccHH
Confidence 568999999999999999999863 43 44444443
No 371
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.22 E-value=0.0002 Score=62.09 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=27.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcc
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 79 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~ 79 (270)
..|+|.||+||||||+++.||...+..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999988866655443
No 372
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.21 E-value=0.0027 Score=58.31 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV 83 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~~ 83 (270)
.+..|+++|.||+||||+++.++..+ +.....++..++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 45678999999999999999999875 4445555555443
No 373
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.20 E-value=0.00013 Score=59.74 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=25.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
...+|..+.|.||+||||||+++.|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467788999999999999999999987
No 374
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.20 E-value=0.00027 Score=60.09 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
..+..|.|.||+||||||+++.|++..+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4677899999999999999999997543
No 375
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.19 E-value=0.001 Score=50.57 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=41.3
Q ss_pred HHHHhcCCeEEEEcCCCcccCcccCCCCCCCChHHHHHHHHHHHhhcCCcCCCCeEEEEEeCCC
Q 024249 99 VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 162 (270)
Q Consensus 99 ~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~vi~tt~~~ 162 (270)
.++....|.++++|| |+++.|+.....+.+++..+. ..+.+||++||+.
T Consensus 75 aral~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiiivsH~~ 123 (148)
T 1f2t_B 75 SLYLAGEISLLILDE-----------PTPYLDEERRRKLITIMERYL----KKIPQVILVSHDE 123 (148)
T ss_dssp HHHHHSSCSEEEEES-----------CSCTTCHHHHHHHHHHHHHTG----GGSSEEEEEESCG
T ss_pred HHHHcCCCCEEEEEC-----------CCccCCHHHHHHHHHHHHHHH----ccCCEEEEEEChH
Confidence 356778899999999 899999999999999998873 2357899999996
No 376
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.17 E-value=8.6e-05 Score=59.35 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=27.0
Q ss_pred HhcCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 39 ESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 39 ~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.++.+.++..++|.|++|+|||||++.+++.
T Consensus 19 ~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 19 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred hHCCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3377888889999999999999999999863
No 377
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.10 E-value=0.0025 Score=55.54 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.+..+++.|+||+|||||++.+++
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999986
No 378
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.08 E-value=0.00016 Score=57.99 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcC
Q 024249 48 GVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
.|.|.|++||||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998653
No 379
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.06 E-value=0.01 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
++..+++.||+|+||||++..+|..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6778899999999999999999974
No 380
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.05 E-value=0.00048 Score=64.46 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=32.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcchhH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL 82 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~~~ 82 (270)
.+..|+|.|++||||||+++.|+..+ +.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 56779999999999999999999987 888888876544
No 381
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.03 E-value=0.00037 Score=61.70 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=27.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEEEc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 78 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~ 78 (270)
+..|+|.||+|+|||+|+..||...+..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 346889999999999999999998876665543
No 382
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.03 E-value=0.00036 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
+...+|+||+|+|||+++.+|.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999974
No 383
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.99 E-value=0.0022 Score=56.21 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 024249 48 GVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.+.|.|+||+|||||++++++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3889999999999999999863
No 384
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.97 E-value=0.00019 Score=61.07 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=19.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
+..|.|.||+||||||+++.++...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 385
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.95 E-value=0.00052 Score=53.97 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=27.3
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCeEEEEcchh
Q 024249 49 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 81 (270)
Q Consensus 49 ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~ 81 (270)
++++|++|||||+++..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999987 77777776543
No 386
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.95 E-value=0.00054 Score=56.05 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=28.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 84 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~ 84 (270)
..+.|.|||||||||+++.|+..++.+.+. ..++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is--~gdllR 44 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIS--TGDMLR 44 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEC--HHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeee--chHHHH
Confidence 457899999999999999999999877554 444443
No 387
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.94 E-value=0.0012 Score=62.29 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=27.1
Q ss_pred cCcHHHHHHHHHHhhccccChHHHHhcCCCCCceEEEEcCCCchHHHHHHHHH
Q 024249 15 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 67 (270)
Q Consensus 15 ~G~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia 67 (270)
.-.++|++.+...+.. ....+|+||||||||+++-.+.
T Consensus 189 ~LN~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp TCCHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHH
Confidence 3466777877776653 2356999999999998655444
No 388
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.94 E-value=0.0012 Score=60.36 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=25.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcc
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 79 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~ 79 (270)
.++..|+++|++|+||||++..||..+ +..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346679999999999999999999643 444444444
No 389
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.93 E-value=0.00042 Score=60.56 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
++..+.|.||||+|||||+++|++...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 567899999999999999999998543
No 390
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.93 E-value=0.012 Score=47.11 Aligned_cols=58 Identities=17% Similarity=0.073 Sum_probs=34.4
Q ss_pred CCCcccccCcHHHHHHHHHHhhc-cccCh-HHHHhcCCCCCceEEEEcCCCchHHHHHHHHH
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIEL-PIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 67 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~-~l~~~-~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia 67 (270)
..+|++++-.+...+.+.+.=.. |.... +.+.. +..+..+++.+|.|+|||..+-..+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCchhhhhhHHH
Confidence 35689987777777777653211 11111 11221 1235679999999999998654444
No 391
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.91 E-value=0.00043 Score=54.64 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
-.++|.|++|+|||||++.+++.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999999974
No 392
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.91 E-value=0.016 Score=52.03 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcccCcccCCCCCCCChH---HHHHHHHHHHhhcC-----CcCCCCeEEEEEe-----C
Q 024249 94 VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE---VQRTMLELLNQLDG-----FEASNKIKVLMAT-----N 160 (270)
Q Consensus 94 ~~~~~~~a~~~~p~il~lDeid~l~~~~~~~~~~~~~~~---~~~~l~~~l~~l~~-----~~~~~~~~vi~tt-----~ 160 (270)
.+.++.+|..+ .++++||+|++..... ....|.. .++.++++++.-.. .....++.+|+|. +
T Consensus 241 ~~~ai~~ae~~--~il~~DEidki~~~~~---~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 241 KQKAIDAVEQN--GIVFIDEIDKICKKGE---YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHH--CEEEEETGGGGSCCSS---CSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHhccC--CeeeHHHHHHHhhccC---CCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 44445444333 4899999999986532 1234433 34455665543100 0123467778776 4
Q ss_pred CCCCchhhhcCCCCcceEEEeCCCCHHHHHHHHHH----hhc----cCCC------CCCCCHHHHHH-------HcCCCC
Q 024249 161 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI----HSR----RMNL------MRGIDLKKIAE-------KMNGAS 219 (270)
Q Consensus 161 ~~~~l~~~l~r~~r~~~~i~~~~p~~~~r~~il~~----~~~----~~~~------~~~~~~~~la~-------~~~g~~ 219 (270)
..+ +-+.++. ||...+.++.++.++...|+.. +.+ .+.. ..+.-+..+++ .|...-
T Consensus 316 ~~d-lipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~G 392 (444)
T 1g41_A 316 PSD-LIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIG 392 (444)
T ss_dssp GGG-SCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCG
T ss_pred hhh-cchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCC
Confidence 333 4355665 9999999999999999999931 111 1111 01112345554 345666
Q ss_pred HHHHHHHHHHHHHHHHHh------cCCCCCHHHHHHHHHHHh
Q 024249 220 GAELKAVCTEAGMFALRE------RRIHVTQEDFEMAVAKVM 255 (270)
Q Consensus 220 ~~dl~~l~~~a~~~a~~~------~~~~i~~~d~~~a~~~~~ 255 (270)
++-|..++......+..+ ....|+.+++++.+...+
T Consensus 393 aR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 393 ARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp GGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred chHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence 677766666655544332 235688888887765543
No 393
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.91 E-value=0.00048 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
-.++|.|++|+|||||++.+++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999974
No 394
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.90 E-value=0.00062 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
...+.|.|++|+||||+++.+++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 456889999999999999999875
No 395
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.90 E-value=0.0015 Score=58.56 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 79 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~ 79 (270)
++..|+++|++|+||||++..+|... +..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35689999999999999999999753 334444443
No 396
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.90 E-value=0.00073 Score=54.14 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=27.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
..|.|.|++||||||+++.+|..++.+++-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 468899999999999999999999988773
No 397
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.89 E-value=0.00017 Score=61.74 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
+.++..+.|.||||+|||||+++|++..
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 4468899999999999999999998743
No 398
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.89 E-value=0.002 Score=55.96 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=24.9
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
+....+..+.+.|+||+||||+++.+++.
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34567788999999999999999999864
No 399
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.88 E-value=0.00016 Score=59.14 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=23.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh--cCCeEEEEcchhH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL 82 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~--~~~~~i~i~~~~~ 82 (270)
..+.|+||+||||||++++|++. +..+.+.+++.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 44678999999999999999984 3445555555554
No 400
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.85 E-value=0.0042 Score=54.57 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
+..|..++|.|++|+|||+|+..|++.
T Consensus 172 igrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 172 IGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp CBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred ccCCceEEEecCCCCChhHHHHHHHHH
Confidence 567888999999999999999988863
No 401
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.85 E-value=0.00063 Score=53.02 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.+.+++|.|+||+||||++..+...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4789999999999999999999874
No 402
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.84 E-value=0.0041 Score=49.29 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=28.8
Q ss_pred CcccccCcHHHHHHHHHHhhc-cccCh-HHHHhcCCCCCceEEEEcCCCchHHHHH
Q 024249 10 TYDMIGGLDQQIKEIKEVIEL-PIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLLA 63 (270)
Q Consensus 10 ~~~~i~G~~~~~~~l~~~l~~-~l~~~-~~~~~~~~~~~~~ilL~Gp~GtGKTtl~ 63 (270)
+|++++-.+...+.+.+.=.. |.... +.+.. +..+..+++.+|+|+|||..+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPL--ALEGKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHH
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH--HcCCCCEEEECCCCChHHHHH
Confidence 466776556655665542111 11111 11111 123567999999999999863
No 403
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.83 E-value=0.00047 Score=58.86 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
..+..+.|.||||+|||||+++|++..
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 357789999999999999999999854
No 404
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.81 E-value=0.0041 Score=50.56 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCcccccCcHHHHHHHHHHhhcccc-Ch-HHHHhcCCCCCceEEEEcCCCchHHHH
Q 024249 9 STYDMIGGLDQQIKEIKEVIELPIK-HP-ELFESLGIAQPKGVLLYGPPGTGKTLL 62 (270)
Q Consensus 9 ~~~~~i~G~~~~~~~l~~~l~~~l~-~~-~~~~~~~~~~~~~ilL~Gp~GtGKTtl 62 (270)
.+|++++-.+...+.+.+.=...+. .. +.+.. +..++.+++.+|.|+|||..
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGL--ALQGKDVLGAAKTGSGKTLA 78 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEEeCCCCcHHHH
Confidence 4688887666666666653211111 11 11111 12457799999999999984
No 405
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.80 E-value=0.00047 Score=60.35 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.+.++ ..+|+||||+||||++++|+.
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 34455 788999999999999999986
No 406
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.80 E-value=0.00069 Score=57.82 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
..+..+.|.||||+|||||+++|+ ..
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 457789999999999999999999 54
No 407
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0017 Score=50.83 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.....|++.|++|+|||||++.+.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999874
No 408
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.75 E-value=0.0025 Score=51.41 Aligned_cols=33 Identities=12% Similarity=-0.066 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh---cCCeEEEE
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRV 77 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~---~~~~~i~i 77 (270)
++...+++||.|+||||.+-.++.. .+..++.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 4566778999999999988777653 24444444
No 409
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.73 E-value=0.0028 Score=56.82 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=43.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc----CCeEEEEcchhHH----------Hhhhc----------hhhHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSELV----------QKYIG----------EGSRMVRELFVM 100 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~----~~~~i~i~~~~~~----------~~~~~----------~~~~~~~~~~~~ 100 (270)
++..|+++|++|+||||++-.+|..+ +..+..+++.... ....+ .....+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 46788999999999999999998532 5555555544210 00000 112223556666
Q ss_pred HHhcCCeEEEEcC
Q 024249 101 AREHAPSIIFMDE 113 (270)
Q Consensus 101 a~~~~p~il~lDe 113 (270)
+......++++|=
T Consensus 179 ~~~~~~D~VIIDT 191 (433)
T 2xxa_A 179 AKLKFYDVLLVDT 191 (433)
T ss_dssp HHHTTCSEEEEEC
T ss_pred HHhCCCCEEEEEC
Confidence 6655668999987
No 410
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.72 E-value=0.001 Score=61.84 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC----CeEEEEcchhH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTD----CTFIRVSGSEL 82 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~----~~~i~i~~~~~ 82 (270)
.+..|+|.|++||||||+++.|+..++ .+++.+++..+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 456789999999999999999998765 66777776554
No 411
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.72 E-value=0.0012 Score=54.26 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=23.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
|..|.+.|++||||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999999873
No 412
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.72 E-value=0.004 Score=54.25 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
....|+|+|+||+||||++..++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999999864
No 413
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.71 E-value=0.00085 Score=60.12 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=0.0
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHH
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
+.+.++..++|+||||+||||++++|+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHh
No 414
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.69 E-value=0.0039 Score=48.48 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
....+++.|++|+|||||++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999864
No 415
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.69 E-value=0.001 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
..+.+.|++||||||++..++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999875
No 416
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.68 E-value=0.00094 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
+...+|+||+|+||||++.+|.--
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 456889999999999999999753
No 417
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.65 E-value=0.0006 Score=56.79 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
..+..|.|.|++||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999999873
No 418
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.64 E-value=0.00094 Score=51.68 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
++..++|.|++|+|||||++.+++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999974
No 419
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.63 E-value=0.017 Score=52.31 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCeEEEEcch
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS 80 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~---~~~~i~i~~~ 80 (270)
.+..|+++|.||+||||+++.++... ..+...++..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 45678999999999999999999864 3344444433
No 420
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.62 E-value=0.00094 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=20.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
..++|.|++|+|||||++.+++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999986
No 421
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.60 E-value=0.0016 Score=53.13 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=27.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCeEEE
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 76 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~ 76 (270)
...|.|.|++||||||+++.+|..++.+++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3468899999999999999999999988754
No 422
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.58 E-value=0.0026 Score=51.24 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=27.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCeEEEEcchhHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 85 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~~~~~~i~i~~~~~~~~ 85 (270)
..|.|+|..||||||+++.++. .+.+++ ++..+...
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~ 45 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHR 45 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHH
Confidence 4589999999999999999997 776655 44444433
No 423
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.57 E-value=0.0019 Score=57.07 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHH
Q 024249 43 IAQPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 43 ~~~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
+..+..+.|.|+||+|||||+++|.+
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 45677899999999999999999998
No 424
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.53 E-value=0.0014 Score=57.13 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.+..+.|.|+||+|||||++++++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999974
No 425
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.53 E-value=0.0037 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||+|++.+.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999988875
No 426
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.53 E-value=0.0092 Score=47.35 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=19.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
+..+++.+|+|+|||..+-..+.
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999998877664
No 427
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.52 E-value=0.0024 Score=51.71 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCC
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDC 72 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~ 72 (270)
.|..|.+.|++|+||||+++.++..++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5778999999999999999999998765
No 428
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.51 E-value=0.0019 Score=48.99 Aligned_cols=21 Identities=52% Similarity=0.809 Sum_probs=19.2
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 024249 48 GVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.|++.|++|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999975
No 429
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.51 E-value=0.0015 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
.+..|.|.|++||||||+++.++..+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999999754
No 430
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.51 E-value=0.00097 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.6
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 024249 48 GVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.++|.|++|+|||||++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 431
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.50 E-value=0.0025 Score=57.04 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
...+..++.|++|||||+++..++..
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc
Confidence 44566889999999999999888753
No 432
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.49 E-value=0.013 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4589999999999999999986
No 433
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.49 E-value=0.0089 Score=48.22 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=16.1
Q ss_pred CCceEEEEcCCCchHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLA 63 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~ 63 (270)
.++.+++.+|.|+|||...
T Consensus 56 ~~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp TTCCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCChHHHHH
Confidence 4678999999999999743
No 434
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.45 E-value=0.0015 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
..++|.|++|+|||||++.+++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999997
No 435
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.44 E-value=0.01 Score=46.86 Aligned_cols=54 Identities=17% Similarity=0.044 Sum_probs=29.2
Q ss_pred CCcccccCcHHHHHHHHHHhhc-cccC-hHHHHhcCCCCCceEEEEcCCCchHHHHHH
Q 024249 9 STYDMIGGLDQQIKEIKEVIEL-PIKH-PELFESLGIAQPKGVLLYGPPGTGKTLLAR 64 (270)
Q Consensus 9 ~~~~~i~G~~~~~~~l~~~l~~-~l~~-~~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~ 64 (270)
.+|+++.-.+..++.+.+.=.. +... .+.+.. +..++.+++.+|+|+|||..+-
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI--ALSGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHH--HHTTCCEEEECCSSSTTHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HccCCCEEEECCCCCchHHHHH
Confidence 3577776555555555542111 1111 111211 1235779999999999996433
No 436
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.43 E-value=0.0071 Score=48.53 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=29.8
Q ss_pred CCCcccccCcHHHHHHHHHHhhc-cccCh-HHHHhcCCCCCceEEEEcCCCchHHHHH
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIEL-PIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLLA 63 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~-~l~~~-~~~~~~~~~~~~~ilL~Gp~GtGKTtl~ 63 (270)
..+|++++-.+..++.+.+.=.. +.... +.+.. +..+..+++.+|.|+|||...
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPG--ALRGESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHHTCCEEEECCSSHHHHHHH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHH
Confidence 34688886666666666542111 11111 11111 113467999999999999853
No 437
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.41 E-value=0.0011 Score=56.52 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 024249 48 GVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.|+|.||+|+|||||++.|++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999998753
No 438
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.40 E-value=0.0015 Score=53.43 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=20.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
..+..|.+.||+|+||||+++.++..+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999999754
No 439
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.40 E-value=0.0091 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
-.|++.|++|+|||+|++.+.+.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35899999999999999999863
No 440
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.38 E-value=0.0019 Score=48.69 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 024249 48 GVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.+++.|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999863
No 441
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.37 E-value=0.002 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
.+..|.+.|++||||||+++.++..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999998754
No 442
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.37 E-value=0.0078 Score=51.34 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
++..|.+.|.||+|||||++++.+
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456689999999999999999986
No 443
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.36 E-value=0.0024 Score=51.05 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
....+++.|++|+|||||++.+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999974
No 444
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.36 E-value=0.002 Score=48.90 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=20.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4589999999999999999986
No 445
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.36 E-value=0.012 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
..|+|.|.||+|||||++.+.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4589999999999999999976
No 446
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.32 E-value=0.0026 Score=48.85 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHH
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.....|++.|++|+|||||++.+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999999986
No 447
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.32 E-value=0.0025 Score=58.24 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCC
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHTDC 72 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~~~ 72 (270)
.+..|.|.|.+||||||++++||..++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998864
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.29 E-value=0.0026 Score=51.80 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAHHTD 71 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~~~~ 71 (270)
..|..|.+.|++||||||+++.++..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567788999999999999999997543
No 449
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.29 E-value=0.0015 Score=58.26 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHh
Q 024249 49 VLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 49 ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
|+|.||||+|||||++.+++.
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 799999999999999999974
No 450
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.29 E-value=0.0023 Score=48.36 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 451
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.28 E-value=0.0024 Score=50.39 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=21.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHH
Q 024249 42 GIAQPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 42 ~~~~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.-...-.|++.|++|+|||+|++.+.+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 334456799999999999999999986
No 452
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.27 E-value=0.0022 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 024249 48 GVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.|++.|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 453
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.26 E-value=0.0035 Score=50.28 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
...+++.|++|+|||||++.++...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999764
No 454
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.24 E-value=0.0025 Score=48.18 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 455
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.24 E-value=0.0026 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
|..|.+.|++||||||.++.++..+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999754
No 456
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.23 E-value=0.0037 Score=53.46 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.+.+++|.|+||+||||++..+.+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999875
No 457
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.23 E-value=0.0026 Score=48.28 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.5
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 024249 48 GVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.|++.|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 458
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.22 E-value=0.0011 Score=59.26 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=24.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 024249 41 LGIAQPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 41 ~~~~~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
+.+..+..+.|.|+||+|||||++++++.
T Consensus 152 lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 152 LELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 34556778999999999999999999864
No 459
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.22 E-value=0.0026 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
-.|++.|++|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 460
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.21 E-value=0.0022 Score=49.04 Aligned_cols=22 Identities=50% Similarity=0.644 Sum_probs=20.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||+|++.+.+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4589999999999999999985
No 461
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.21 E-value=0.011 Score=46.02 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.-.|++.|++|+|||+|++.+.+
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 34589999999999999999986
No 462
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.20 E-value=0.0027 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999999986
No 463
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.20 E-value=0.0033 Score=49.16 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
....|++.|++|+|||||++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999863
No 464
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.20 E-value=0.0034 Score=47.80 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
..-.|++.|++|+|||||++.+.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445699999999999999999986
No 465
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0025 Score=48.47 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 466
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.19 E-value=0.0027 Score=48.30 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=20.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
-.|++.|++|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 467
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.17 E-value=0.0026 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 468
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.16 E-value=0.0029 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.-.|++.|++|+|||||++.+.+
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999986
No 469
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.15 E-value=0.017 Score=49.52 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=34.5
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccc-Ch-HHHHhcCCCCCceEEEEcCCCchHHHHHHHHH
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIELPIK-HP-ELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 67 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~~l~-~~-~~~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia 67 (270)
..+|++++-.+...+.+.+.=...+. .. +.+..+ +..+..+++.+|+|+|||..+-..+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~~l~~~~TGsGKT~~~~~~~ 65 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLF-LNDEYNIVAQARTGSGKTASFAIPL 65 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HHTCSEEEEECCSSSSHHHHHHHHH
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCCEEEECCCCChHHHHHHHHH
Confidence 34688887677776776654222111 11 111111 1234689999999999998755443
No 470
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.15 E-value=0.0026 Score=48.45 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.1
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 024249 48 GVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.|++.|++|+|||||++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999974
No 471
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.14 E-value=0.0028 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHH
Q 024249 44 AQPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 44 ~~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.....|++.|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999974
No 472
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.13 E-value=0.0031 Score=47.75 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 473
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.10 E-value=0.0033 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 474
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0037 Score=49.14 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
+.-.|++.|++|+|||+|++.+.+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 456699999999999999999986
No 475
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.07 E-value=0.0033 Score=48.82 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999986
No 476
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.07 E-value=0.011 Score=48.31 Aligned_cols=54 Identities=13% Similarity=-0.004 Sum_probs=30.7
Q ss_pred CCCcccccCcHHHHHHHHHHhhc-cccCh-HHHHhcCCCCCceEEEEcCCCchHHHHH
Q 024249 8 DSTYDMIGGLDQQIKEIKEVIEL-PIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLLA 63 (270)
Q Consensus 8 ~~~~~~i~G~~~~~~~l~~~l~~-~l~~~-~~~~~~~~~~~~~ilL~Gp~GtGKTtl~ 63 (270)
..+|++++-.+...+.+.+.=.. |.... +.+.. +..+..+++.+|.|+|||...
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPV--ALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHH--HHHTCCEEEEECTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCcCHHHHHH
Confidence 45788876666655655542111 11111 11111 123578999999999999763
No 477
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.06 E-value=0.003 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
...|+|.|++|+|||||++.+.+
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 35689999999999999999997
No 478
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.06 E-value=0.0031 Score=52.70 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
..|+|.|++|+|||||++++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999863
No 479
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.05 E-value=0.0036 Score=47.37 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.2
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 024249 48 GVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.|++.|++|+|||+|++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999985
No 480
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.05 E-value=0.0027 Score=54.03 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
+..+.|.|+||+|||||++++.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999973
No 481
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.05 E-value=0.0035 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 482
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.04 E-value=0.0035 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||+|++.+.+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999999985
No 483
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.03 E-value=0.0044 Score=49.01 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
...|++.|++|+|||||++.+.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999999975
No 484
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.03 E-value=0.0033 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
..|++.|++|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 485
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.01 E-value=0.0034 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999999985
No 486
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.01 E-value=0.0037 Score=48.86 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=20.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4589999999999999999986
No 487
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.01 E-value=0.0038 Score=47.83 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.-.|++.|++|+|||||++.+.+
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34699999999999999999986
No 488
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.00 E-value=0.0078 Score=48.35 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHHT 70 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~~ 70 (270)
....+++.|++|+|||||+..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999753
No 489
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.00 E-value=0.0043 Score=48.51 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.-.|++.|++|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999874
No 490
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.00 E-value=0.0038 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
...|++.|++|+|||||++.+.+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999997
No 491
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.99 E-value=0.0038 Score=48.61 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 024249 47 KGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
-.|++.|++|+|||||++.+++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 492
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.99 E-value=0.0044 Score=48.66 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.1
Q ss_pred HHhcCCCCCceEEEEcCCCchHHHHHHHHHH
Q 024249 38 FESLGIAQPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 38 ~~~~~~~~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
++++--...-.|++.|++|+|||+|++.+..
T Consensus 21 ~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 21 FSRIFGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp GGGTTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HHHhccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 3333334556799999999999999999974
No 493
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.99 E-value=0.0067 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.+.++++.||+|+|||++++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999986
No 494
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.97 E-value=0.004 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
..|++.|++|+|||||++.+.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4599999999999999999986
No 495
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.97 E-value=0.03 Score=45.62 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=18.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.+...+++||.|+||||.+-..+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~ 41 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVR 41 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHH
Confidence 467788999999999976555543
No 496
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.96 E-value=0.004 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
-.|++.|++|+|||||++.+.+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4589999999999999999986
No 497
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.95 E-value=0.0068 Score=56.90 Aligned_cols=22 Identities=41% Similarity=0.680 Sum_probs=18.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 024249 47 KGVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 47 ~~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
..++++||||||||+++..++.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~ 217 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVY 217 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 3578999999999998877764
No 498
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.94 E-value=0.0052 Score=47.30 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 024249 45 QPKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 45 ~~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
..-.|++.|++|+|||||++.+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999863
No 499
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.94 E-value=0.0032 Score=48.90 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.4
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 024249 48 GVLLYGPPGTGKTLLARAVAH 68 (270)
Q Consensus 48 ~ilL~Gp~GtGKTtl~~~ia~ 68 (270)
.|++.|++|+|||||++.+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999986
No 500
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.93 E-value=0.0039 Score=48.45 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 024249 46 PKGVLLYGPPGTGKTLLARAVAHH 69 (270)
Q Consensus 46 ~~~ilL~Gp~GtGKTtl~~~ia~~ 69 (270)
.-.|++.|++|+|||+|++.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999863
Done!