BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024250
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1J|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1U|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U22|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
Length = 765
Score = 508 bits (1307), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/269 (91%), Positives = 255/269 (94%)
Query: 2 VEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKG 61
VEYFGEQLSGFAFTANGWVQSYGSRCVKPP+IYGDVSRPKA TVFWS+ AQS T+RP KG
Sbjct: 497 VEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAXTVFWSAXAQSXTSRPXKG 556
Query: 62 MLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLR 121
LTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEK GI VIQIDEAALREGLPLR
Sbjct: 557 XLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLR 616
Query: 122 KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSD 181
KSEHAFYLDWAVHSFRITNCGVQD+TQIHTH CYS+FNDIIHSIID DADVITIENSRSD
Sbjct: 617 KSEHAFYLDWAVHSFRITNCGVQDSTQIHTHXCYSHFNDIIHSIIDXDADVITIENSRSD 676
Query: 182 EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLK 241
EKLLSVFREGVKYGAGIGPGVYDIHSPRIPS+EEIADR+NK LAVLE NILWVNPDCGLK
Sbjct: 677 EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKXLAVLEQNILWVNPDCGLK 736
Query: 242 TRKYTEVKPALSNMVAAAKLLRTQLASAK 270
TRKYTEVKPAL N V AAKL+R+QLASAK
Sbjct: 737 TRKYTEVKPALKNXVDAAKLIRSQLASAK 765
>pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus
Mutans
Length = 755
Score = 317 bits (813), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 157/268 (58%), Positives = 191/268 (71%), Gaps = 1/268 (0%)
Query: 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
MVE+FG++L+GF T GWVQSYGSR VKPPIIYGDV + +TV + AQS+T RP+K
Sbjct: 481 MVEFFGQKLAGFTTTKFGWVQSYGSRAVKPPIIYGDVQHLEPITVEETVYAQSLTDRPVK 540
Query: 61 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
GMLTGP+TI NWSF R D PR + QI LAIKDE++ LE AGI +IQ+DEAALREGLPL
Sbjct: 541 GMLTGPITITNWSFERTDIPRDQLFNQIGLAIKDEIKLLENAGIAIIQVDEAALREGLPL 600
Query: 121 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
RKS+ YLD AVH+F I V+D TQIHTHMCYS F++II +I +DADVI+IE SRS
Sbjct: 601 RKSKQKAYLDDAVHAFHIATSSVKDETQIHTHMCYSKFDEIIDAIRALDADVISIETSRS 660
Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240
++ F V Y GIG GVYDIHSPR+P+ EE+ I + L L WVNPDCGL
Sbjct: 661 HGDIIESFETAV-YPLGIGLGVYDIHSPRVPTKEEVVANIERPLRQLSPTQFWVNPDCGL 719
Query: 241 KTRKYTEVKPALSNMVAAAKLLRTQLAS 268
KTR+ E AL +VAA K +R +L +
Sbjct: 720 KTRQEPETIAALKVLVAATKEVRQKLGN 747
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 51 AQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEV-EDLEKAGINVIQI 109
A+ + K ++TGP+T + S D + L + +V +L KAG + IQ+
Sbjct: 144 AREVVGDKAKPVITGPITYVALSTGVED---FTAAVKSLLPLYKQVFTELVKAGASYIQV 200
Query: 110 DEAAL--REGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSII- 166
DE EG ++ A Y +A V D I + F +I S +
Sbjct: 201 DEPIFVTDEGKDYLQAAKAVYAYFAKE--------VPDAKFIFQ----TYFEGLIDSQVL 248
Query: 167 -DMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYD---IHSPRIPSTEEIADRINK 222
+ D ++ E+ L + G G I GV D I S T + + I +
Sbjct: 249 SQLPVDAFGLDFVYGLEENLEAIKTGAFKGKEIFAGVIDGRNIWSSDFVKTSALLETIEE 308
Query: 223 MLAVLETNILWVNPDCGL-----KTRKYTEVKPALSNMVAAA 259
A L + P C L T+ T++ P L N +A A
Sbjct: 309 QSAALT-----IQPSCSLLHVPVTTKNETDLDPVLRNGLAFA 345
>pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans
pdb|3T0C|A Chain A, Crystal Structure Of Streptococcus Mutans Mete Complexed
With Zinc
Length = 779
Score = 317 bits (812), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 157/268 (58%), Positives = 191/268 (71%), Gaps = 1/268 (0%)
Query: 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
MVE+FG++L+GF T GWVQSYGSR VKPPIIYGDV + +TV + AQS+T RP+K
Sbjct: 513 MVEFFGQKLAGFTTTKFGWVQSYGSRAVKPPIIYGDVQHLEPITVEETVYAQSLTDRPVK 572
Query: 61 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
GMLTGP+TI NWSF R D PR + QI LAIKDE++ LE AGI +IQ+DEAALREGLPL
Sbjct: 573 GMLTGPITITNWSFERTDIPRDQLFNQIGLAIKDEIKLLENAGIAIIQVDEAALREGLPL 632
Query: 121 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
RKS+ YLD AVH+F I V+D TQIHTHMCYS F++II +I +DADVI+IE SRS
Sbjct: 633 RKSKQKAYLDDAVHAFHIATSSVKDETQIHTHMCYSKFDEIIDAIRALDADVISIETSRS 692
Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240
++ F V Y GIG GVYDIHSPR+P+ EE+ I + L L WVNPDCGL
Sbjct: 693 HGDIIESFETAV-YPLGIGLGVYDIHSPRVPTKEEVVANIERPLRQLSPTQFWVNPDCGL 751
Query: 241 KTRKYTEVKPALSNMVAAAKLLRTQLAS 268
KTR+ E AL +VAA K +R +L +
Sbjct: 752 KTRQEPETIAALKVLVAATKEVRQKLGN 779
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 51 AQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEV-EDLEKAGINVIQI 109
A+ + K ++TGP+T + S D + L + +V +L KAG + IQ+
Sbjct: 176 AREVVGDKAKPVITGPITYVALSTGVED---FTAAVKSLLPLYKQVFTELVKAGASYIQV 232
Query: 110 DEAAL--REGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSII- 166
DE EG ++ A Y +A V D I + F +I S +
Sbjct: 233 DEPIFVTDEGKDYLQAAKAVYAYFAKE--------VPDAKFIFQ----TYFEGLIDSQVL 280
Query: 167 -DMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYD---IHSPRIPSTEEIADRINK 222
+ D ++ E+ L + G G I GV D I S T + + I +
Sbjct: 281 SQLPVDAFGLDFVYGLEENLEAIKTGAFKGKEIFAGVIDGRNIWSSDFVKTSALLETIEE 340
Query: 223 MLAVLETNILWVNPDCGL-----KTRKYTEVKPALSNMVAAA 259
A L + P C L T+ T++ P L N +A A
Sbjct: 341 QSAALT-----IQPSCSLLHVPVTTKNETDLDPVLRNGLAFA 377
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
pdb|3PPH|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
Length = 789
Score = 317 bits (812), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 155/266 (58%), Positives = 195/266 (73%), Gaps = 5/266 (1%)
Query: 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
MV+YFGEQL+GFAFT NGWVQSYGSR V+PPII GDVSRPKAMTV S AQS+T++PMK
Sbjct: 527 MVQYFGEQLNGFAFTTNGWVQSYGSRYVRPPIIVGDVSRPKAMTVKESVYAQSITSKPMK 586
Query: 61 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
GMLTGPVTIL WSF R+D Q+ LA++DEV DLE AGI VIQ+DE A+REGLPL
Sbjct: 587 GMLTGPVTILRWSFPRDDVSGKIQALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPL 646
Query: 121 RK-SEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 179
R E + YL+WA SFR+ GV+++TQIH+H CYS+ + + I +DADV++IE S+
Sbjct: 647 RAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCYSDLDP--NHIKALDADVVSIEFSK 704
Query: 180 SDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCG 239
D+ + +E +Y IG G++DIHSPRIPS +E RI ++L V + WVNPDCG
Sbjct: 705 KDDP--NYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYPASKFWVNPDCG 762
Query: 240 LKTRKYTEVKPALSNMVAAAKLLRTQ 265
LKTR + EVK +L+NMV AAK R +
Sbjct: 763 LKTRGWPEVKESLTNMVEAAKEFRAK 788
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
Without Zinc
pdb|3PPG|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
With Zinc
Length = 789
Score = 317 bits (812), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 155/266 (58%), Positives = 195/266 (73%), Gaps = 5/266 (1%)
Query: 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
MV+YFGEQL+GFAFT NGWVQSYGSR V+PPII GDVSRPKAMTV S AQS+T++PMK
Sbjct: 527 MVQYFGEQLNGFAFTTNGWVQSYGSRYVRPPIIVGDVSRPKAMTVKESVYAQSITSKPMK 586
Query: 61 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
GMLTGPVTIL WSF R+D Q+ LA++DEV DLE AGI VIQ+DE A+REGLPL
Sbjct: 587 GMLTGPVTILRWSFPRDDVSGKIQALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPL 646
Query: 121 RK-SEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 179
R E + YL+WA SFR+ GV+++TQIH+H CYS+ + + I +DADV++IE S+
Sbjct: 647 RAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCYSDLDP--NHIKALDADVVSIEFSK 704
Query: 180 SDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCG 239
D+ + +E +Y IG G++DIHSPRIPS +E RI ++L V + WVNPDCG
Sbjct: 705 KDDP--NYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYPASKFWVNPDCG 762
Query: 240 LKTRKYTEVKPALSNMVAAAKLLRTQ 265
LKTR + EVK +L+NMV AAK R +
Sbjct: 763 LKTRGWPEVKESLTNMVEAAKEFRAK 788
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
pdb|3PPC|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
Length = 789
Score = 317 bits (811), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 155/266 (58%), Positives = 195/266 (73%), Gaps = 5/266 (1%)
Query: 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
MV+YFGEQL+GFAFT NGWVQSYGSR V+PPII GDVSRPKAMTV S AQS+T++PMK
Sbjct: 527 MVQYFGEQLNGFAFTTNGWVQSYGSRYVRPPIIVGDVSRPKAMTVKESVYAQSITSKPMK 586
Query: 61 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
GMLTGPVTIL WSF R+D Q+ LA++DEV DLE AGI VIQ+DE A+REGLPL
Sbjct: 587 GMLTGPVTILRWSFPRDDVSGKIQALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPL 646
Query: 121 RK-SEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 179
R E + YL+WA SFR+ GV+++TQIH+H CYS+ + + I +DADV++IE S+
Sbjct: 647 RAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCYSDLDP--NHIKALDADVVSIEFSK 704
Query: 180 SDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCG 239
D+ + +E +Y IG G++DIHSPRIPS +E RI ++L V + WVNPDCG
Sbjct: 705 KDDP--NYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYPASKFWVNPDCG 762
Query: 240 LKTRKYTEVKPALSNMVAAAKLLRTQ 265
LKTR + EVK +L+NMV AAK R +
Sbjct: 763 LKTRGWPEVKESLTNMVEAAKEFRAK 788
>pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|1T7L|B Chain B, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|3BQ5|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ5|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ6|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
pdb|3BQ6|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
Length = 766
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 141/268 (52%), Positives = 192/268 (71%), Gaps = 1/268 (0%)
Query: 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
MVE+F E+L+G A T NGWV SYGSRC +PPIIYG V+RP+ MT+ + AQS+T +P+K
Sbjct: 500 MVEFFAEKLNGIATTQNGWVLSYGSRCYRPPIIYGTVTRPEPMTLKEITYAQSLTEKPVK 559
Query: 61 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
GMLTGPVTI++WS+ R D P E YQIALAI +EV+DLE+AGI ++QIDE A RE P+
Sbjct: 560 GMLTGPVTIMSWSYYREDIPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPI 619
Query: 121 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
+KS+ Y +WA+++F + + TQIH HMCYS+FN+II I ++ DVI+IE SRS
Sbjct: 620 KKSKWPEYFEWAINAFNLA-ANARPETQIHAHMCYSDFNEIIEYIHQLEFDVISIEASRS 678
Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240
+++S F + IG GV+DIHSP +PS E+ + + ++L VL ++W+NPDCGL
Sbjct: 679 KGEIISAFENFKGWIKQIGVGVWDIHSPAVPSINEMREIVERVLRVLPKELIWINPDCGL 738
Query: 241 KTRKYTEVKPALSNMVAAAKLLRTQLAS 268
KTR + EV P+L NMVA AK +R + S
Sbjct: 739 KTRNWDEVIPSLRNMVALAKEMREKFES 766
>pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin-
Independent Methionine Synthase Complexed With
Methyltetrahydrofolate
pdb|1XR2|B Chain B, Crystal Structure Of Oxidized T. Maritima Cobalamin-
Independent Methionine Synthase Complexed With
Methyltetrahydrofolate
Length = 766
Score = 301 bits (772), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 141/268 (52%), Positives = 192/268 (71%), Gaps = 1/268 (0%)
Query: 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
MVE+F E+L+G A T NGWV SYGSRC +PPIIYG V+RP+ MT+ + AQS+T +P+K
Sbjct: 500 MVEFFAEKLNGIATTQNGWVLSYGSRCYRPPIIYGTVTRPEPMTLKEITYAQSLTEKPVK 559
Query: 61 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
GMLTGPVTI++WS+ R D P E YQIALAI +EV+DLE+AGI ++QIDE A RE P+
Sbjct: 560 GMLTGPVTIMSWSYYREDIPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPI 619
Query: 121 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
+KS+ Y +WA+++F + + TQIH HMCYS+FN+II I ++ DVI+IE SRS
Sbjct: 620 KKSKWPEYFEWAINAFNLA-ANARPETQIHAHMCYSDFNEIIEYIHQLEFDVISIEASRS 678
Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240
+++S F + IG GV+DIHSP +PS E+ + + ++L VL ++W+NPDCGL
Sbjct: 679 KGEIISAFENFKGWIKQIGVGVWDIHSPAVPSINEMREIVERVLRVLPKELIWINPDCGL 738
Query: 241 KTRKYTEVKPALSNMVAAAKLLRTQLAS 268
KTR + EV P+L NMVA AK +R + S
Sbjct: 739 KTRNWDEVIPSLRNMVALAKEMREKFES 766
>pdb|1XPG|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And
Methyltetrahydrofolate
pdb|1XPG|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And
Methyltetrahydrofolate
Length = 765
Score = 286 bits (732), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 136/266 (51%), Positives = 184/266 (69%), Gaps = 1/266 (0%)
Query: 2 VEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKG 61
VE+F E+L+G A T NGWV SYGSRC +PPIIYG V+RP+ T+ + AQS+T +P+KG
Sbjct: 501 VEFFAEKLNGIATTQNGWVLSYGSRCYRPPIIYGTVTRPEPXTLKEITYAQSLTEKPVKG 560
Query: 62 MLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLR 121
LTGPVTI +WS+ R D P E YQIALAI +EV+DLE+AGI ++QIDE A RE P++
Sbjct: 561 XLTGPVTIXSWSYYREDIPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPIK 620
Query: 122 KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSD 181
KS+ Y +WA+++F + + TQIH H CYS+FN+II I ++ DVI+IE SRS
Sbjct: 621 KSKWPEYFEWAINAFNLA-ANARPETQIHAHXCYSDFNEIIEYIHQLEFDVISIEASRSK 679
Query: 182 EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLK 241
+++S F + IG GV+DIHSP +PS E + + ++L VL ++W+NPDCGLK
Sbjct: 680 GEIISAFENFKGWIKQIGVGVWDIHSPAVPSINEXREIVERVLRVLPKELIWINPDCGLK 739
Query: 242 TRKYTEVKPALSNMVAAAKLLRTQLA 267
TR + EV P+L N VA AK R + A
Sbjct: 740 TRNWDEVIPSLRNXVALAKEXREKFA 765
>pdb|1XDJ|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
pdb|1XDJ|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
Length = 766
Score = 286 bits (731), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/267 (50%), Positives = 184/267 (68%), Gaps = 1/267 (0%)
Query: 2 VEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKG 61
VE+F E+L+G A T NGWV SYGSRC +PPIIYG V+RP+ T+ + AQS+T +P+KG
Sbjct: 501 VEFFAEKLNGIATTQNGWVLSYGSRCYRPPIIYGTVTRPEPXTLKEITYAQSLTEKPVKG 560
Query: 62 MLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLR 121
LTGPVTI +WS+ R D P E YQIALAI +EV+DLE+AGI ++QIDE A RE P++
Sbjct: 561 XLTGPVTIXSWSYYREDIPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPIK 620
Query: 122 KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSD 181
KS+ Y +WA+++F + + TQIH H CYS+FN+II I ++ DVI+IE SRS
Sbjct: 621 KSKWPEYFEWAINAFNLA-ANARPETQIHAHXCYSDFNEIIEYIHQLEFDVISIEASRSK 679
Query: 182 EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLK 241
+++S F + IG GV+DIHSP +PS E + + ++L VL ++W+NPDCGLK
Sbjct: 680 GEIISAFENFKGWIKQIGVGVWDIHSPAVPSINEXREIVERVLRVLPKELIWINPDCGLK 739
Query: 242 TRKYTEVKPALSNMVAAAKLLRTQLAS 268
TR + EV P+L N VA AK R + S
Sbjct: 740 TRNWDEVIPSLRNXVALAKEXREKFES 766
>pdb|3RPD|A Chain A, The Structure Of A B12-Independent Methionine Synthase
From Shewanella Sp. W3-18-1 In Complex With
Selenomethionine.
pdb|3RPD|B Chain B, The Structure Of A B12-Independent Methionine Synthase
From Shewanella Sp. W3-18-1 In Complex With
Selenomethionine
Length = 357
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 40/293 (13%)
Query: 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
V F E L+G F+ V+ P + G VSR K++ V + + T +P+K
Sbjct: 82 FVTTFIEHLNGVDFSKRKIVKIRDRYDASVPTVVGPVSRQKSVFVEDAKFLRKQTTQPIK 141
Query: 61 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
L GP T ++ + + + R + ++ A + +E ++LE AG+++IQ DE A
Sbjct: 142 WALPGPXTXIDTLYDDHYKSREKLAWEFAKILNEEAKELEAAGVDIIQFDEPAF------ 195
Query: 121 RKSEHAFY---LDWAVHSFRITNCGVQDTTQIHTHMCYS------------------NFN 159
+ F+ DW + G++ T + H+CY +
Sbjct: 196 ----NVFFDEVNDWGIACLERAIEGLKCETAV--HICYGYGIKANTDWKKTLGSEWRQYE 249
Query: 160 DIIHSIIDMDADVITIE--NSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 217
++ + + D+I++E NS +LL + R G + G D+ + I + EE+A
Sbjct: 250 EVFPKLQKSNIDIISLECHNSHVPXELLELIR-----GKKVXVGAIDVATDTIETAEEVA 304
Query: 218 DRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 270
D + K L ++ + L+ +CG + + L+ + A A+++R +L + +
Sbjct: 305 DTLRKALKFVDADKLYPCTNCGXTPLSHQVTRGKLNALSAGAEIVRKELLALR 357
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 56 ARPMKGMLTGPVTILNWSFVRND--QPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAA 113
+P G+L P T N +R D + E I + + + V + ++
Sbjct: 166 GQPAPGVL--PETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSF 223
Query: 114 LREGLPLRKSEHA-FYLDWAVHSFRITNCGVQ 144
LREG L + A F LD + FR+ N G+Q
Sbjct: 224 LREGAELARQYGALFILDEVISGFRVGNHGMQ 255
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 133 VHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMD 169
VH+ T G++ T++HTH+ + ++H +D+D
Sbjct: 465 VHATFYTPEGLRHGTRLHTHLIGNIHTHLVHYRVDLD 501
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,025,993
Number of Sequences: 62578
Number of extensions: 326074
Number of successful extensions: 804
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 22
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)