Query 024250
Match_columns 270
No_of_seqs 159 out of 1173
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01207 methionine synthase; 100.0 1.5E-57 3.3E-62 407.6 28.6 254 1-266 65-343 (343)
2 PRK05222 5-methyltetrahydropte 100.0 3.8E-55 8.2E-60 430.6 30.0 266 1-267 492-757 (758)
3 PLN02475 5-methyltetrahydropte 100.0 1.2E-54 2.6E-59 425.3 30.9 270 1-270 497-766 (766)
4 PRK09121 5-methyltetrahydropte 100.0 6.6E-53 1.4E-57 381.9 27.5 253 1-267 67-339 (339)
5 COG0620 MetE Methionine syntha 100.0 2.5E-52 5.4E-57 374.6 25.9 262 1-265 69-330 (330)
6 TIGR01371 met_syn_B12ind 5-met 100.0 1.5E-51 3.3E-56 404.8 29.2 264 1-265 486-750 (750)
7 PRK08575 5-methyltetrahydropte 100.0 1.7E-48 3.6E-53 352.0 26.3 247 1-262 67-322 (326)
8 PRK04326 methionine synthase; 100.0 5.2E-48 1.1E-52 350.2 29.2 254 1-267 73-327 (330)
9 PF01717 Meth_synt_2: Cobalami 100.0 1.7E-47 3.6E-52 346.1 24.5 258 1-261 65-324 (324)
10 PRK06520 5-methyltetrahydropte 100.0 5.3E-47 1.2E-51 346.8 26.9 257 4-263 75-368 (368)
11 KOG2263 Methionine synthase II 100.0 1.3E-47 2.7E-52 345.5 17.9 268 1-268 497-764 (765)
12 PRK06233 hypothetical protein; 100.0 1.3E-46 2.8E-51 344.9 24.6 260 1-263 73-371 (372)
13 cd03312 CIMS_N_terminal_like C 100.0 4.7E-46 1E-50 339.6 25.3 247 4-260 93-359 (360)
14 cd03311 CIMS_C_terminal_like C 100.0 2.5E-45 5.4E-50 332.9 19.5 254 1-260 64-331 (332)
15 PRK00957 methionine synthase; 100.0 7.3E-44 1.6E-48 319.7 24.8 235 1-263 62-305 (305)
16 TIGR01371 met_syn_B12ind 5-met 100.0 8.3E-43 1.8E-47 343.0 26.1 250 3-263 88-357 (750)
17 PLN02475 5-methyltetrahydropte 100.0 1.1E-42 2.4E-47 341.0 26.4 251 4-263 94-370 (766)
18 PRK05222 5-methyltetrahydropte 100.0 7.4E-42 1.6E-46 336.6 25.5 238 16-264 107-364 (758)
19 PRK06052 5-methyltetrahydropte 100.0 1.9E-37 4E-42 274.2 22.3 195 57-265 111-343 (344)
20 PF08267 Meth_synt_1: Cobalami 100.0 1.6E-36 3.6E-41 269.4 16.2 214 3-226 92-309 (310)
21 cd03310 CIMS_like CIMS - Cobal 100.0 9.6E-36 2.1E-40 268.8 18.4 243 1-260 63-320 (321)
22 KOG2263 Methionine synthase II 100.0 9.8E-32 2.1E-36 242.9 17.1 253 3-264 94-371 (765)
23 PRK06438 hypothetical protein; 100.0 8.5E-31 1.8E-35 227.6 16.3 218 1-259 66-291 (292)
24 cd00465 URO-D_CIMS_like The UR 100.0 6.8E-28 1.5E-32 216.1 18.9 242 2-260 53-305 (306)
25 cd03465 URO-D_like The URO-D _ 99.9 3.4E-22 7.4E-27 181.0 15.7 204 44-260 111-329 (330)
26 TIGR01463 mtaA_cmuA methyltran 99.9 1.1E-21 2.3E-26 178.8 17.6 205 42-262 121-338 (340)
27 PRK06252 methylcobalamin:coenz 99.9 1.1E-21 2.3E-26 178.6 17.5 204 43-263 122-337 (339)
28 cd03307 Mta_CmuA_like MtaA_Cmu 99.8 8.3E-20 1.8E-24 165.4 16.2 200 44-260 114-325 (326)
29 PRK00115 hemE uroporphyrinogen 99.8 1.4E-19 3.1E-24 165.1 15.7 205 42-262 121-344 (346)
30 PLN02433 uroporphyrinogen deca 99.8 3.4E-19 7.4E-24 162.6 16.9 205 43-264 115-339 (345)
31 TIGR01464 hemE uroporphyrinoge 99.8 9.3E-19 2E-23 159.3 15.3 203 42-260 115-337 (338)
32 cd00717 URO-D Uroporphyrinogen 99.8 1.3E-18 2.8E-23 158.2 15.9 203 42-260 112-334 (335)
33 PF01208 URO-D: Uroporphyrinog 99.8 4.4E-18 9.6E-23 155.0 12.9 202 44-261 122-342 (343)
34 cd03308 CmuA_CmuC_like CmuA_Cm 99.7 7.2E-16 1.6E-20 142.3 15.5 200 48-260 159-377 (378)
35 COG0407 HemE Uroporphyrinogen- 99.7 1.5E-15 3.3E-20 137.1 16.2 207 42-264 124-350 (352)
36 cd03309 CmuC_like CmuC_like. P 99.6 1.6E-13 3.4E-18 123.8 16.7 179 60-245 116-308 (321)
37 KOG2872 Uroporphyrinogen decar 98.8 6.3E-08 1.4E-12 84.0 11.5 190 57-263 145-357 (359)
38 TIGR01496 DHPS dihydropteroate 95.0 2.3 5E-05 37.3 18.4 155 91-258 24-192 (257)
39 PRK08091 ribulose-phosphate 3- 95.0 0.72 1.6E-05 39.7 12.5 145 91-259 26-173 (228)
40 PLN02334 ribulose-phosphate 3- 94.9 1.1 2.3E-05 38.5 13.5 74 92-176 22-97 (229)
41 PF00834 Ribul_P_3_epim: Ribul 94.8 0.45 9.7E-06 40.2 10.7 145 91-260 13-161 (201)
42 PRK08005 epimerase; Validated 94.7 0.85 1.9E-05 38.8 12.1 145 91-258 14-160 (210)
43 COG0646 MetH Methionine syntha 94.0 3.5 7.5E-05 36.8 14.6 174 60-259 117-309 (311)
44 PRK08745 ribulose-phosphate 3- 93.9 2.1 4.6E-05 36.7 13.0 145 91-258 17-164 (223)
45 cd00739 DHPS DHPS subgroup of 93.5 4.8 0.0001 35.3 17.3 152 93-257 27-193 (257)
46 COG0036 Rpe Pentose-5-phosphat 93.0 2.5 5.3E-05 36.1 11.6 145 91-259 17-164 (220)
47 PF02581 TMP-TENI: Thiamine mo 92.9 1.8 3.9E-05 35.6 10.8 69 93-180 15-83 (180)
48 PRK08883 ribulose-phosphate 3- 91.8 4.6 0.0001 34.5 12.2 91 91-191 13-105 (220)
49 PRK13753 dihydropteroate synth 91.7 9.2 0.0002 34.0 15.8 153 92-256 27-195 (279)
50 cd00423 Pterin_binding Pterin 91.6 8.6 0.00019 33.6 17.2 154 91-256 25-192 (258)
51 PRK09722 allulose-6-phosphate 91.6 4.3 9.2E-05 35.0 11.7 144 91-259 16-163 (229)
52 PRK14057 epimerase; Provisiona 90.8 6.8 0.00015 34.3 12.3 143 91-259 33-187 (254)
53 PF01729 QRPTase_C: Quinolinat 89.6 1.6 3.4E-05 35.8 7.0 64 95-177 92-156 (169)
54 PRK03512 thiamine-phosphate py 89.5 4.4 9.6E-05 34.4 10.0 66 95-179 24-89 (211)
55 PRK00043 thiE thiamine-phospha 89.4 6.5 0.00014 32.8 11.0 68 92-178 23-90 (212)
56 cd00564 TMP_TenI Thiamine mono 89.2 7.4 0.00016 31.7 11.0 70 91-179 13-82 (196)
57 PF00809 Pterin_bind: Pterin b 88.9 13 0.00028 31.4 15.7 151 96-257 25-190 (210)
58 PRK11613 folP dihydropteroate 87.1 21 0.00046 31.8 19.3 152 93-255 41-204 (282)
59 PTZ00170 D-ribulose-5-phosphat 86.6 20 0.00043 30.8 12.8 79 91-179 20-98 (228)
60 PRK09490 metH B12-dependent me 86.1 38 0.00083 36.4 16.1 166 60-242 132-318 (1229)
61 KOG3111 D-ribulose-5-phosphate 85.1 22 0.00047 29.9 11.6 99 92-202 19-119 (224)
62 TIGR02082 metH 5-methyltetrahy 85.0 36 0.00079 36.5 15.4 165 61-242 117-302 (1178)
63 TIGR00693 thiE thiamine-phosph 84.7 16 0.00034 30.1 10.6 66 94-178 17-82 (196)
64 PRK02615 thiamine-phosphate py 84.2 14 0.0003 33.9 10.7 67 93-178 160-226 (347)
65 PRK08195 4-hyroxy-2-oxovalerat 82.7 38 0.00083 30.9 17.2 146 91-256 26-183 (337)
66 PRK08999 hypothetical protein; 82.6 14 0.00029 33.1 9.9 67 94-179 148-214 (312)
67 cd04724 Tryptophan_synthase_al 82.5 31 0.00068 29.8 15.0 81 91-175 15-110 (242)
68 cd04735 OYE_like_4_FMN Old yel 81.2 30 0.00066 31.7 11.8 93 85-177 139-256 (353)
69 PRK05581 ribulose-phosphate 3- 80.0 17 0.00038 30.4 9.3 20 92-111 18-37 (220)
70 cd00429 RPE Ribulose-5-phospha 79.7 16 0.00034 30.3 8.8 73 92-175 14-86 (211)
71 COG0352 ThiE Thiamine monophos 78.5 32 0.0007 29.2 10.2 67 94-179 25-91 (211)
72 PRK06512 thiamine-phosphate py 78.4 30 0.00066 29.5 10.2 65 94-177 30-95 (221)
73 PLN02898 HMP-P kinase/thiamin- 78.1 27 0.00059 33.6 10.9 66 94-178 311-376 (502)
74 PRK05848 nicotinate-nucleotide 77.6 19 0.00041 31.9 8.9 64 95-177 194-258 (273)
75 PRK12738 kbaY tagatose-bisphos 77.3 53 0.0012 29.3 14.3 146 93-257 32-199 (286)
76 cd00530 PTE Phosphotriesterase 77.1 46 0.00099 29.2 11.4 93 147-242 150-249 (293)
77 PRK08385 nicotinate-nucleotide 76.5 15 0.00033 32.6 8.0 66 95-177 194-260 (278)
78 PRK12290 thiE thiamine-phospha 76.1 24 0.00051 33.4 9.5 65 95-178 222-286 (437)
79 PRK10508 hypothetical protein; 76.0 4.6 0.0001 36.8 4.8 47 210-260 285-331 (333)
80 TIGR00695 uxuA mannonate dehyd 75.6 48 0.001 31.0 11.2 152 96-266 49-226 (394)
81 PRK06559 nicotinate-nucleotide 75.2 13 0.00028 33.2 7.2 62 94-177 208-270 (290)
82 PRK09016 quinolinate phosphori 75.0 13 0.00029 33.3 7.2 61 95-177 220-281 (296)
83 PRK07896 nicotinate-nucleotide 72.6 19 0.00041 32.2 7.7 64 95-177 211-275 (289)
84 PRK07428 nicotinate-nucleotide 72.5 21 0.00047 31.8 8.0 64 95-177 208-272 (288)
85 TIGR01163 rpe ribulose-phospha 72.5 54 0.0012 27.1 13.3 76 91-177 12-87 (210)
86 PRK06106 nicotinate-nucleotide 72.4 17 0.00037 32.4 7.2 61 95-177 206-267 (281)
87 cd02803 OYE_like_FMN_family Ol 72.2 73 0.0016 28.5 11.7 92 85-176 136-248 (327)
88 PRK08508 biotin synthase; Prov 71.8 71 0.0015 28.2 13.9 99 130-235 75-186 (279)
89 COG0157 NadC Nicotinate-nucleo 71.8 31 0.00068 30.6 8.6 63 95-177 200-263 (280)
90 TIGR03217 4OH_2_O_val_ald 4-hy 71.4 82 0.0018 28.7 17.4 146 91-256 25-182 (333)
91 PRK06978 nicotinate-nucleotide 70.9 20 0.00043 32.2 7.3 62 94-177 216-278 (294)
92 PRK01060 endonuclease IV; Prov 70.7 71 0.0015 27.7 11.0 30 148-177 3-33 (281)
93 PRK07695 transcriptional regul 69.7 33 0.00072 28.5 8.3 60 99-178 23-82 (201)
94 COG5016 Pyruvate/oxaloacetate 69.0 22 0.00048 33.3 7.3 74 90-176 156-231 (472)
95 COG1099 Predicted metal-depend 69.0 58 0.0013 28.1 9.3 94 147-253 128-228 (254)
96 PRK07709 fructose-bisphosphate 68.5 88 0.0019 27.9 14.7 131 96-242 35-181 (285)
97 cd02930 DCR_FMN 2,4-dienoyl-Co 68.2 97 0.0021 28.3 12.0 91 85-175 132-243 (353)
98 PRK05742 nicotinate-nucleotide 67.7 19 0.0004 32.1 6.5 61 95-177 201-262 (277)
99 PRK07535 methyltetrahydrofolat 67.6 86 0.0019 27.5 16.9 149 91-259 26-184 (261)
100 cd04733 OYE_like_2_FMN Old yel 67.1 99 0.0021 28.0 12.4 93 83-175 142-255 (338)
101 cd07944 DRE_TIM_HOA_like 4-hyd 66.4 91 0.002 27.3 16.5 151 91-256 21-177 (266)
102 PRK06543 nicotinate-nucleotide 66.2 27 0.00058 31.1 7.2 61 95-177 205-266 (281)
103 PRK10812 putative DNAse; Provi 66.1 92 0.002 27.3 14.1 82 147-241 125-209 (265)
104 PRK06096 molybdenum transport 65.7 32 0.00068 30.7 7.6 64 95-177 201-265 (284)
105 TIGR01334 modD putative molybd 64.8 35 0.00077 30.3 7.7 64 95-177 200-264 (277)
106 PF00682 HMGL-like: HMGL-like 64.2 89 0.0019 26.5 11.9 136 92-249 16-169 (237)
107 PRK12331 oxaloacetate decarbox 63.9 43 0.00093 31.9 8.6 76 91-177 155-230 (448)
108 PRK08255 salicylyl-CoA 5-hydro 63.6 1.2E+02 0.0027 30.9 12.3 92 85-176 546-658 (765)
109 cd00958 DhnA Class I fructose- 62.8 95 0.0021 26.3 13.9 140 94-254 80-232 (235)
110 PLN02389 biotin synthase 62.4 1.3E+02 0.0029 27.9 13.5 139 91-243 120-277 (379)
111 cd00951 KDGDH 5-dehydro-4-deox 62.2 53 0.0011 29.1 8.5 78 90-176 21-101 (289)
112 PRK13585 1-(5-phosphoribosyl)- 62.2 57 0.0012 27.8 8.5 81 95-190 37-120 (241)
113 cd07943 DRE_TIM_HOA 4-hydroxy- 61.6 1.1E+02 0.0024 26.6 16.8 138 91-248 23-172 (263)
114 PRK14041 oxaloacetate decarbox 60.8 54 0.0012 31.5 8.6 77 90-177 153-229 (467)
115 cd08210 RLP_RrRLP Ribulose bis 60.6 1.4E+02 0.0031 27.6 11.2 94 91-189 142-238 (364)
116 PLN02716 nicotinate-nucleotide 60.4 47 0.001 30.0 7.7 70 95-177 215-291 (308)
117 COG0621 MiaB 2-methylthioadeni 60.2 1.6E+02 0.0034 28.0 12.6 167 90-266 176-372 (437)
118 TIGR00683 nanA N-acetylneurami 59.9 68 0.0015 28.5 8.8 79 90-176 21-103 (290)
119 cd02931 ER_like_FMN Enoate red 59.0 1.5E+02 0.0033 27.4 11.4 92 85-176 145-272 (382)
120 PRK14042 pyruvate carboxylase 59.0 53 0.0012 32.5 8.4 75 90-177 154-230 (596)
121 PF07745 Glyco_hydro_53: Glyco 58.5 1.5E+02 0.0032 27.1 17.5 153 80-261 100-282 (332)
122 PRK03620 5-dehydro-4-deoxygluc 58.2 79 0.0017 28.2 8.9 78 90-176 28-108 (303)
123 PRK09195 gatY tagatose-bisphos 57.6 1.4E+02 0.0031 26.6 15.0 145 95-257 34-199 (284)
124 TIGR00078 nadC nicotinate-nucl 57.6 44 0.00096 29.4 7.0 59 95-175 190-249 (265)
125 cd07939 DRE_TIM_NifV Streptomy 57.5 1.3E+02 0.0028 26.1 17.6 141 92-255 22-177 (259)
126 PRK03170 dihydrodipicolinate s 57.5 89 0.0019 27.6 9.1 80 90-177 22-104 (292)
127 cd03174 DRE_TIM_metallolyase D 57.3 1.2E+02 0.0027 25.9 16.0 147 92-256 21-185 (265)
128 cd01572 QPRTase Quinolinate ph 57.2 38 0.00083 29.8 6.6 61 95-177 194-255 (268)
129 cd00952 CHBPH_aldolase Trans-o 57.2 82 0.0018 28.3 8.9 80 90-177 29-111 (309)
130 PRK12737 gatY tagatose-bisphos 57.1 1.4E+02 0.0031 26.5 15.2 147 93-257 32-199 (284)
131 TIGR01858 tag_bisphos_ald clas 56.7 1.5E+02 0.0032 26.5 14.7 144 95-256 32-196 (282)
132 cd00408 DHDPS-like Dihydrodipi 56.0 78 0.0017 27.7 8.4 80 90-177 18-100 (281)
133 PRK12330 oxaloacetate decarbox 55.7 88 0.0019 30.3 9.1 77 90-177 155-233 (499)
134 PRK07107 inosine 5-monophospha 55.6 48 0.001 32.1 7.4 62 157-225 242-307 (502)
135 TIGR01859 fruc_bis_ald_ fructo 55.3 1.5E+02 0.0033 26.3 15.9 78 94-181 31-109 (282)
136 cd07942 DRE_TIM_LeuA Mycobacte 54.7 72 0.0016 28.4 8.0 21 95-115 28-48 (284)
137 PRK05096 guanosine 5'-monophos 54.5 99 0.0021 28.4 8.7 68 160-238 111-184 (346)
138 PRK07998 gatY putative fructos 54.2 1.6E+02 0.0035 26.2 14.2 131 94-243 33-179 (283)
139 PF00478 IMPDH: IMP dehydrogen 53.7 37 0.0008 31.3 6.0 70 158-238 109-182 (352)
140 cd00950 DHDPS Dihydrodipicolin 53.1 1.2E+02 0.0026 26.6 9.1 80 90-177 21-103 (284)
141 PRK12581 oxaloacetate decarbox 52.9 94 0.002 29.8 8.8 74 91-177 164-239 (468)
142 cd00947 TBP_aldolase_IIB Tagat 52.9 1.7E+02 0.0036 26.0 15.4 130 94-242 28-173 (276)
143 PRK09282 pyruvate carboxylase 52.8 81 0.0018 31.2 8.6 77 90-177 154-230 (592)
144 TIGR01108 oadA oxaloacetate de 52.5 82 0.0018 31.1 8.6 77 90-177 149-225 (582)
145 cd01096 Alkanal_monooxygenase 52.5 23 0.00049 31.8 4.5 42 209-253 272-313 (315)
146 cd02932 OYE_YqiM_FMN Old yello 52.2 1.8E+02 0.0039 26.3 12.1 91 85-175 149-260 (336)
147 PRK11449 putative deoxyribonuc 52.0 1.6E+02 0.0035 25.6 11.6 83 147-242 128-212 (258)
148 PLN02229 alpha-galactosidase 51.9 1.7E+02 0.0037 27.8 10.2 90 82-179 79-186 (427)
149 TIGR03249 KdgD 5-dehydro-4-deo 51.8 97 0.0021 27.5 8.4 78 90-176 26-106 (296)
150 PRK13523 NADPH dehydrogenase N 51.2 1.9E+02 0.0042 26.3 11.8 88 85-177 137-248 (337)
151 TIGR02313 HpaI-NOT-DapA 2,4-di 51.2 1E+02 0.0022 27.4 8.4 80 90-177 21-103 (294)
152 COG0084 TatD Mg-dependent DNas 50.7 1.7E+02 0.0038 25.6 15.7 83 147-242 126-210 (256)
153 PRK14040 oxaloacetate decarbox 50.7 84 0.0018 31.1 8.3 75 90-177 155-231 (593)
154 cd04734 OYE_like_3_FMN Old yel 50.5 2E+02 0.0043 26.2 11.9 92 85-176 136-249 (343)
155 PRK14332 (dimethylallyl)adenos 50.2 2.3E+02 0.005 26.9 14.0 88 90-186 186-277 (449)
156 cd07937 DRE_TIM_PC_TC_5S Pyruv 49.4 1.8E+02 0.004 25.5 15.8 145 95-255 26-187 (275)
157 cd07948 DRE_TIM_HCS Saccharomy 48.5 1.9E+02 0.0041 25.3 15.9 141 93-256 25-180 (262)
158 cd08207 RLP_NonPhot Ribulose b 48.5 2.2E+02 0.0049 26.8 10.4 95 91-190 160-257 (406)
159 PRK05692 hydroxymethylglutaryl 48.0 1.2E+02 0.0026 27.0 8.3 17 95-111 160-176 (287)
160 TIGR00674 dapA dihydrodipicoli 47.9 1.2E+02 0.0027 26.6 8.4 80 90-177 19-101 (285)
161 PRK14338 (dimethylallyl)adenos 47.6 2.6E+02 0.0056 26.6 14.1 136 90-236 187-343 (459)
162 cd07939 DRE_TIM_NifV Streptomy 46.9 1.4E+02 0.003 25.9 8.5 15 91-105 111-125 (259)
163 PRK07094 biotin synthase; Prov 46.8 2.1E+02 0.0046 25.5 15.3 119 94-232 77-212 (323)
164 TIGR01305 GMP_reduct_1 guanosi 46.7 89 0.0019 28.6 7.2 57 160-224 110-172 (343)
165 PRK08072 nicotinate-nucleotide 46.2 88 0.0019 27.8 7.1 22 156-177 239-261 (277)
166 cd07943 DRE_TIM_HOA 4-hydroxy- 46.1 1.4E+02 0.0029 26.0 8.3 22 92-113 143-164 (263)
167 COG2355 Zn-dependent dipeptida 46.0 2.3E+02 0.005 25.7 13.3 136 96-243 114-267 (313)
168 PRK14340 (dimethylallyl)adenos 45.8 2.7E+02 0.0058 26.4 14.0 91 91-188 182-276 (445)
169 TIGR03858 LLM_2I7G probable ox 45.7 37 0.00081 30.8 4.8 32 208-239 283-314 (337)
170 cd04740 DHOD_1B_like Dihydroor 45.4 1.7E+02 0.0037 25.8 8.9 76 92-175 104-185 (296)
171 cd04722 TIM_phosphate_binding 45.4 1.5E+02 0.0033 23.4 10.0 102 91-204 13-123 (200)
172 TIGR03558 oxido_grp_1 lucifera 45.4 33 0.00071 30.8 4.4 43 209-255 278-320 (323)
173 COG1180 PflA Pyruvate-formate 44.8 2.1E+02 0.0046 24.9 12.0 45 130-179 99-144 (260)
174 cd07937 DRE_TIM_PC_TC_5S Pyruv 44.8 1.5E+02 0.0032 26.1 8.4 17 250-266 256-272 (275)
175 cd02933 OYE_like_FMN Old yello 44.8 2.4E+02 0.0053 25.6 11.8 90 84-177 146-262 (338)
176 PRK10076 pyruvate formate lyas 44.5 1.9E+02 0.0042 24.4 9.7 97 130-236 54-166 (213)
177 PF06187 DUF993: Protein of un 44.4 42 0.0009 30.7 4.7 61 84-154 126-186 (382)
178 PLN02417 dihydrodipicolinate s 44.3 1.7E+02 0.0036 25.8 8.6 80 90-177 22-104 (280)
179 cd08205 RuBisCO_IV_RLP Ribulos 44.0 2.6E+02 0.0057 25.8 11.3 85 90-179 146-233 (367)
180 PLN02692 alpha-galactosidase 43.3 1.3E+02 0.0029 28.3 8.0 90 82-179 72-180 (412)
181 PF01026 TatD_DNase: TatD rela 43.2 1E+02 0.0022 26.6 7.0 82 147-240 125-208 (255)
182 PF00701 DHDPS: Dihydrodipicol 43.0 2.1E+02 0.0046 25.0 9.2 79 90-176 22-103 (289)
183 PRK09875 putative hydrolase; P 42.9 2.5E+02 0.0053 25.1 14.4 89 146-241 152-247 (292)
184 TIGR01235 pyruv_carbox pyruvat 42.9 1.6E+02 0.0036 31.6 9.5 75 90-177 689-765 (1143)
185 PF00682 HMGL-like: HMGL-like 42.6 1.3E+02 0.0028 25.4 7.5 19 94-112 141-159 (237)
186 TIGR03326 rubisco_III ribulose 42.1 3E+02 0.0066 25.9 11.0 95 91-190 161-258 (412)
187 COG0107 HisF Imidazoleglycerol 42.0 2.2E+02 0.0049 24.7 8.5 90 97-205 37-131 (256)
188 PRK06843 inosine 5-monophospha 41.8 1.6E+02 0.0034 27.7 8.3 71 91-177 153-223 (404)
189 cd01568 QPRTase_NadC Quinolina 41.7 1.3E+02 0.0028 26.5 7.5 21 156-176 234-255 (269)
190 COG3010 NanE Putative N-acetyl 40.0 1.1E+02 0.0024 26.1 6.3 70 91-177 86-155 (229)
191 cd08148 RuBisCO_large Ribulose 40.0 3.1E+02 0.0067 25.4 10.5 94 92-190 145-241 (366)
192 PF04131 NanE: Putative N-acet 39.9 1.7E+02 0.0036 24.6 7.3 101 44-177 20-120 (192)
193 COG0329 DapA Dihydrodipicolina 39.7 2.8E+02 0.006 24.8 12.2 123 90-220 25-155 (299)
194 cd00945 Aldolase_Class_I Class 39.3 2E+02 0.0043 23.0 11.2 122 90-239 13-151 (201)
195 cd00452 KDPG_aldolase KDPG and 39.0 2.2E+02 0.0047 23.3 11.4 101 93-225 19-119 (190)
196 PF13679 Methyltransf_32: Meth 38.8 41 0.00089 26.2 3.5 26 147-173 102-128 (141)
197 PF09370 TIM-br_sig_trns: TIM- 38.7 1E+02 0.0022 27.3 6.1 81 93-177 160-247 (268)
198 cd00405 PRAI Phosphoribosylant 38.6 2.3E+02 0.0049 23.4 8.5 83 95-190 11-93 (203)
199 PRK09517 multifunctional thiam 38.5 4.5E+02 0.0097 26.9 12.4 64 95-178 24-87 (755)
200 PRK06256 biotin synthase; Vali 38.2 3E+02 0.0065 24.7 16.4 128 90-234 94-235 (336)
201 cd01304 FMDH_A Formylmethanofu 37.6 93 0.002 30.4 6.2 50 107-165 194-247 (541)
202 PLN02746 hydroxymethylglutaryl 37.2 2.1E+02 0.0045 26.4 8.2 9 166-174 263-271 (347)
203 PRK14327 (dimethylallyl)adenos 36.7 4.1E+02 0.0088 25.8 14.5 167 90-267 244-440 (509)
204 PRK12999 pyruvate carboxylase; 36.3 2.3E+02 0.005 30.5 9.4 75 90-177 691-767 (1146)
205 COG1856 Uncharacterized homolo 35.9 2.9E+02 0.0064 24.0 14.7 75 94-179 46-120 (275)
206 PF00478 IMPDH: IMP dehydrogen 35.9 2.8E+02 0.006 25.6 8.8 67 93-177 110-178 (352)
207 cd07938 DRE_TIM_HMGL 3-hydroxy 35.6 2.2E+02 0.0048 25.0 8.0 14 98-111 157-170 (274)
208 COG1902 NemA NADH:flavin oxido 35.6 3.6E+02 0.0078 24.9 11.1 93 85-177 144-259 (363)
209 PRK06806 fructose-bisphosphate 35.5 2.2E+02 0.0047 25.3 7.9 63 94-175 156-229 (281)
210 TIGR02660 nifV_homocitr homoci 35.3 3.6E+02 0.0077 24.8 17.4 139 94-255 27-180 (365)
211 PRK11858 aksA trans-homoaconit 35.3 3.6E+02 0.0079 24.9 17.2 141 93-256 29-184 (378)
212 PLN02808 alpha-galactosidase 35.3 3.1E+02 0.0067 25.7 9.1 90 82-179 48-156 (386)
213 cd02810 DHOD_DHPD_FMN Dihydroo 35.3 2.8E+02 0.0061 24.2 8.7 19 159-177 179-197 (289)
214 PRK05458 guanosine 5'-monophos 35.2 3.5E+02 0.0076 24.6 9.5 69 92-176 98-168 (326)
215 PLN02746 hydroxymethylglutaryl 35.1 3.6E+02 0.0078 24.8 12.3 147 94-256 72-236 (347)
216 TIGR03121 one_C_dehyd_A formyl 34.8 1.2E+02 0.0026 29.8 6.6 50 107-165 198-251 (556)
217 PRK07807 inosine 5-monophospha 34.4 2.4E+02 0.0051 27.2 8.4 64 156-227 226-293 (479)
218 PF00016 RuBisCO_large: Ribulo 34.2 3.2E+02 0.007 24.7 8.8 82 94-179 34-118 (309)
219 PRK05660 HemN family oxidoredu 34.1 3.8E+02 0.0082 24.7 16.8 110 129-242 77-206 (378)
220 KOG0447 Dynamin-like GTP bindi 34.0 74 0.0016 31.3 4.8 193 31-223 311-542 (980)
221 TIGR00010 hydrolase, TatD fami 33.8 2.8E+02 0.0061 23.2 9.5 81 147-240 122-204 (252)
222 PRK04147 N-acetylneuraminate l 33.6 3E+02 0.0065 24.3 8.6 80 90-177 24-107 (293)
223 PRK04208 rbcL ribulose bisopho 33.6 4.4E+02 0.0096 25.3 11.3 94 92-190 178-275 (468)
224 cd01573 modD_like ModD; Quinol 33.5 2E+02 0.0044 25.3 7.4 22 156-177 237-259 (272)
225 PRK12857 fructose-1,6-bisphosp 33.4 3.5E+02 0.0076 24.1 14.7 144 95-257 34-199 (284)
226 PRK10605 N-ethylmaleimide redu 33.4 3.9E+02 0.0084 24.6 11.3 27 85-111 154-180 (362)
227 COG1839 Uncharacterized conser 33.4 40 0.00088 26.8 2.5 26 196-221 127-153 (162)
228 cd04739 DHOD_like Dihydroorota 33.1 3.7E+02 0.008 24.3 10.0 79 94-177 116-196 (325)
229 smart00518 AP2Ec AP endonuclea 33.0 3.2E+02 0.0069 23.5 11.7 109 58-179 58-176 (273)
230 cd07941 DRE_TIM_LeuA3 Desulfob 32.9 3.1E+02 0.0067 24.0 8.5 74 90-174 151-225 (273)
231 cd08212 RuBisCO_large_I Ribulo 32.9 4.3E+02 0.0093 25.3 9.8 94 92-190 163-259 (450)
232 PRK09490 metH B12-dependent me 32.8 6.9E+02 0.015 27.3 14.7 161 90-266 384-556 (1229)
233 PRK09240 thiH thiamine biosynt 32.6 4E+02 0.0087 24.5 13.9 72 90-177 107-181 (371)
234 TIGR02090 LEU1_arch isopropylm 32.5 4E+02 0.0086 24.5 17.4 140 94-256 26-180 (363)
235 cd07944 DRE_TIM_HOA_like 4-hyd 32.4 2.7E+02 0.0059 24.3 8.0 22 92-113 140-161 (266)
236 PF07592 DDE_Tnp_ISAZ013: Rhod 32.4 1.8E+02 0.0038 26.4 6.8 66 195-262 134-213 (311)
237 PRK03906 mannonate dehydratase 32.4 2.9E+02 0.0062 25.8 8.4 164 90-267 43-227 (385)
238 TIGR02660 nifV_homocitr homoci 32.2 2.8E+02 0.0061 25.5 8.4 19 94-112 146-164 (365)
239 cd08208 RLP_Photo Ribulose bis 31.6 4.6E+02 0.0099 24.9 10.3 94 92-190 178-274 (424)
240 cd01310 TatD_DNAse TatD like p 31.5 3.1E+02 0.0067 22.9 11.1 83 147-241 122-205 (251)
241 PRK13587 1-(5-phosphoribosyl)- 31.1 3.4E+02 0.0073 23.2 9.9 67 133-207 65-134 (234)
242 PRK03739 2-isopropylmalate syn 31.1 2.8E+02 0.006 27.3 8.5 21 95-115 57-77 (552)
243 PRK07565 dihydroorotate dehydr 30.0 4.1E+02 0.009 23.9 9.6 75 93-175 117-196 (334)
244 PRK14329 (dimethylallyl)adenos 29.9 5E+02 0.011 24.8 13.9 140 90-235 200-360 (467)
245 cd03174 DRE_TIM_metallolyase D 29.7 3.2E+02 0.007 23.2 8.0 16 96-111 152-167 (265)
246 PRK13669 hypothetical protein; 29.5 53 0.0012 23.3 2.4 29 198-226 46-74 (78)
247 PRK09856 fructoselysine 3-epim 29.4 3.6E+02 0.0079 23.1 12.2 20 157-176 14-33 (275)
248 TIGR00695 uxuA mannonate dehyd 29.3 4.2E+02 0.0091 24.9 8.9 82 79-169 203-291 (394)
249 PRK09549 mtnW 2,3-diketo-5-met 29.2 4.9E+02 0.011 24.5 10.9 95 91-190 151-248 (407)
250 PRK14325 (dimethylallyl)adenos 29.1 4.9E+02 0.011 24.5 12.7 169 90-266 179-376 (444)
251 cd08206 RuBisCO_large_I_II_III 29.1 5E+02 0.011 24.5 10.3 95 91-190 149-247 (414)
252 TIGR00284 dihydropteroate synt 28.9 5.5E+02 0.012 24.9 15.4 126 90-240 165-291 (499)
253 TIGR02320 PEP_mutase phosphoen 28.9 4.2E+02 0.0091 23.6 15.7 154 91-264 93-260 (285)
254 cd07938 DRE_TIM_HMGL 3-hydroxy 28.6 4.1E+02 0.0088 23.4 15.2 148 93-256 23-188 (274)
255 PF04008 Adenosine_kin: Adenos 28.6 41 0.0009 26.8 1.9 26 196-221 120-146 (155)
256 PRK06801 hypothetical protein; 28.5 4.3E+02 0.0092 23.6 13.9 81 95-187 34-116 (286)
257 PRK08599 coproporphyrinogen II 28.4 4.6E+02 0.01 23.9 17.3 101 129-233 70-185 (377)
258 PRK07028 bifunctional hexulose 27.9 5.1E+02 0.011 24.3 13.3 117 95-238 21-141 (430)
259 PRK07455 keto-hydroxyglutarate 27.8 3.4E+02 0.0075 22.3 11.2 101 95-227 29-129 (187)
260 TIGR03884 sel_bind_Methan sele 27.4 1E+02 0.0022 21.6 3.4 33 197-232 14-46 (74)
261 PRK08645 bifunctional homocyst 27.4 6.2E+02 0.014 25.1 16.2 134 86-242 121-275 (612)
262 PRK13125 trpA tryptophan synth 27.2 4E+02 0.0087 22.8 14.0 30 147-176 75-108 (244)
263 PRK04452 acetyl-CoA decarbonyl 27.1 4.8E+02 0.01 23.7 13.9 47 213-259 186-233 (319)
264 TIGR00970 leuA_yeast 2-isoprop 27.1 3.3E+02 0.0072 26.8 8.3 75 95-181 53-129 (564)
265 TIGR03471 HpnJ hopanoid biosyn 27.1 5.5E+02 0.012 24.3 14.5 127 91-235 231-373 (472)
266 COG2089 SpsE Sialic acid synth 26.3 5.1E+02 0.011 23.7 13.3 99 150-263 106-206 (347)
267 PRK09140 2-dehydro-3-deoxy-6-p 26.1 3.9E+02 0.0085 22.4 11.8 85 94-201 26-110 (206)
268 PRK08610 fructose-bisphosphate 26.0 4.8E+02 0.01 23.3 15.3 133 95-243 34-182 (286)
269 PRK10425 DNase TatD; Provision 26.0 4.4E+02 0.0095 22.9 11.1 83 147-241 122-207 (258)
270 TIGR03128 RuMP_HxlA 3-hexulose 25.9 3.7E+02 0.0081 22.0 13.2 117 95-239 17-137 (206)
271 PF03437 BtpA: BtpA family; I 25.8 4.5E+02 0.0098 23.0 14.1 84 85-177 24-111 (254)
272 TIGR00167 cbbA ketose-bisphosp 25.7 4.8E+02 0.01 23.2 14.1 134 93-242 32-183 (288)
273 PF03786 UxuA: D-mannonate deh 25.4 2.2E+02 0.0047 26.3 6.2 71 80-159 176-248 (351)
274 cd00740 MeTr MeTr subgroup of 25.1 4.6E+02 0.0099 22.8 16.8 154 91-265 27-194 (252)
275 PRK13361 molybdenum cofactor b 24.7 5.1E+02 0.011 23.2 11.8 68 94-177 52-122 (329)
276 TIGR01919 hisA-trpF 1-(5-phosp 24.4 4.6E+02 0.01 22.6 10.6 118 97-234 38-168 (243)
277 TIGR03849 arch_ComA phosphosul 24.1 4.8E+02 0.01 22.7 9.9 26 90-115 71-96 (237)
278 TIGR02090 LEU1_arch isopropylm 23.9 5.1E+02 0.011 23.8 8.5 21 93-113 144-164 (363)
279 PRK00915 2-isopropylmalate syn 23.9 6.7E+02 0.015 24.3 16.3 142 94-256 30-188 (513)
280 CHL00040 rbcL ribulose-1,5-bis 23.8 6.6E+02 0.014 24.2 10.2 94 92-189 185-281 (475)
281 COG1850 RbcL Ribulose 1,5-bisp 23.6 4.9E+02 0.011 24.5 8.1 94 90-190 171-269 (429)
282 PRK08195 4-hyroxy-2-oxovalerat 23.4 5.7E+02 0.012 23.3 9.1 73 91-175 145-220 (337)
283 PRK14337 (dimethylallyl)adenos 23.1 6.4E+02 0.014 23.8 14.2 166 91-266 181-376 (446)
284 PRK05835 fructose-bisphosphate 23.1 5.6E+02 0.012 23.1 15.3 144 96-256 34-200 (307)
285 PRK07534 methionine synthase I 23.0 5.8E+02 0.013 23.2 14.8 137 86-242 127-283 (336)
286 TIGR01303 IMP_DH_rel_1 IMP deh 22.9 5.4E+02 0.012 24.7 8.7 64 156-227 224-291 (475)
287 cd07945 DRE_TIM_CMS Leptospira 22.9 5.3E+02 0.011 22.7 8.9 75 90-174 147-221 (280)
288 PF07931 CPT: Chloramphenicol 22.9 3.1E+02 0.0067 22.4 6.2 56 82-152 62-117 (174)
289 PF01261 AP_endonuc_2: Xylose 22.8 4E+02 0.0086 21.2 8.0 92 85-179 66-167 (213)
290 PRK08446 coproporphyrinogen II 22.8 5.8E+02 0.013 23.1 16.3 74 160-234 99-184 (350)
291 cd00377 ICL_PEPM Members of th 22.7 5E+02 0.011 22.3 12.1 118 92-216 86-215 (243)
292 PRK11858 aksA trans-homoaconit 22.6 6.1E+02 0.013 23.4 9.1 19 95-113 150-168 (378)
293 PRK05096 guanosine 5'-monophos 22.2 2.7E+02 0.0058 25.6 6.1 66 94-177 111-180 (346)
294 PRK09979 putative rho operon l 22.0 39 0.00084 18.9 0.5 11 233-243 10-20 (33)
295 PRK09997 hydroxypyruvate isome 22.0 5E+02 0.011 22.1 12.5 25 153-177 10-36 (258)
296 PRK06843 inosine 5-monophospha 21.8 6.1E+02 0.013 23.9 8.6 58 160-225 156-217 (404)
297 PRK07084 fructose-bisphosphate 21.4 6.3E+02 0.014 23.0 14.2 137 94-243 39-190 (321)
298 COG3268 Uncharacterized conser 21.0 6.7E+02 0.015 23.2 9.0 44 96-155 90-133 (382)
299 PF10126 Nit_Regul_Hom: Unchar 20.9 2.6E+02 0.0057 21.1 4.8 17 158-174 16-32 (110)
300 cd06557 KPHMT-like Ketopantoat 20.6 5.7E+02 0.012 22.3 7.8 75 100-178 29-113 (254)
301 TIGR00612 ispG_gcpE 1-hydroxy- 20.6 6.7E+02 0.015 23.1 9.8 96 90-205 34-131 (346)
302 KOG0515 p53-interacting protei 20.6 1.2E+02 0.0025 29.7 3.6 98 129-227 563-671 (752)
303 PRK15108 biotin synthase; Prov 20.2 6.6E+02 0.014 22.8 13.4 68 155-225 131-211 (345)
304 cd07948 DRE_TIM_HCS Saccharomy 20.0 5.9E+02 0.013 22.2 8.3 11 95-105 117-127 (262)
No 1
>PRK01207 methionine synthase; Provisional
Probab=100.00 E-value=1.5e-57 Score=407.63 Aligned_cols=254 Identities=30% Similarity=0.470 Sum_probs=234.5
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCc
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQP 80 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~ 80 (270)
|++||+++|+||++ +||+|+||++||++|+|+|+++++.|+++++++++++.+++|+|++||||+|++.|+.+++|.+
T Consensus 65 mv~~f~~~l~G~~~--~g~vr~y~~~~~r~Pii~g~i~~~~~~~v~e~~~a~~~t~kpvK~~ltGP~Ti~~~S~~~~Y~~ 142 (343)
T PRK01207 65 MYEHPAERIKGIIF--YGMVRSFDNRYYRKGSIIDRMERRSSFHLDEVEFVADNTKKPIKVPITGPYTMMDWSFNDFYRD 142 (343)
T ss_pred HHHHHHHhcCCeEe--cCeEEEeccccccCCeEEeeccCCCCCcHHHHHHHHHccCCCcEEEecCHHHHHHHhcccccCC
Confidence 89999999999998 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc------CCC-EEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee
Q 024250 81 RHETCYQIALAIKDEVEDLEKA------GIN-VIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM 153 (270)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~l~~~------G~~-~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~ 153 (270)
+++++.++|.++++|+++|.++ |+. +||||||+|+. +..+.+++++++|.++++++. ++++|+
T Consensus 143 ~~el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPal~~--------~~~~l~~av~a~n~~~~gv~~--~i~~H~ 212 (343)
T PRK01207 143 RYDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPATTT--------HPDEMDIVVDSINKSVYGIDN--EFSIHV 212 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCCcCC--------ChHHHHHHHHHHHHHHhCCCC--cEEEEE
Confidence 9999999999999999999999 898 69999999973 234688999999999999974 589999
Q ss_pred ccC-CchhHHHHHHhCCCCEEEEEccCC-------------CchhHHHhhhc---ccCCCeeeceEecCCCCCCCCHHHH
Q 024250 154 CYS-NFNDIIHSIIDMDADVITIENSRS-------------DEKLLSVFREG---VKYGAGIGPGVYDIHSPRIPSTEEI 216 (270)
Q Consensus 154 c~g-~~~~~~~~l~~~~vd~l~ld~~~~-------------~~~~l~~l~~~---~~~~~~l~~GvVd~~~~~~e~~e~v 216 (270)
||| ++.++++.|.++++|.+++|++++ +.+.|+.|.+. .+.++.|++||+|++++.+|++|+|
T Consensus 213 C~g~~~~~i~~~i~~~~~d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~~~~~l~~~~~Ig~GV~D~~s~~vEs~e~I 292 (343)
T PRK01207 213 CYSSDYRLLYDRIPELNIDGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAEHNESLQRKKFIGLGVTDVHIDYVEPVKLI 292 (343)
T ss_pred EcCCChHHHHHHHHhCCCCEEEEEeccCcccccccccccccchhHHHHHHhhccccCCCCeEEeeEEeCCCCCCCCHHHH
Confidence 999 899999999999999999999843 24677888642 2245679999999999999999999
Q ss_pred HHHHHHHhccc-cCCceEecCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Q 024250 217 ADRINKMLAVL-ETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 266 (270)
Q Consensus 217 ~~~i~~~~~~~-~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~~~~~ 266 (270)
+++|+++++.+ +++++||+|||||.+++++.|++||++|+++|+.+|+||
T Consensus 293 ~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~~a~~KL~~mv~aa~~~r~el 343 (343)
T PRK01207 293 EDRIRYALKIIKDPELVRLNPDCGLRTRSREIGEQKLRNMVAAKNNILKEL 343 (343)
T ss_pred HHHHHHHHHhcCCcceEEEcCCCCCCcCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999 799999999999999999999999999999999999874
No 2
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=3.8e-55 Score=430.64 Aligned_cols=266 Identities=71% Similarity=1.144 Sum_probs=251.9
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCc
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQP 80 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~ 80 (270)
|++||+++|+||.++.+||+++||++|+++|+|+|++++++|+.+++++++++.+++++|++||||+|++.|+.+++|.+
T Consensus 492 ~v~~F~~~l~Gf~~~~~g~v~~~g~~~~r~p~i~G~i~~~~p~~v~~~~~aq~~t~~~vK~~ltGP~T~~~~s~~r~~~~ 571 (758)
T PRK05222 492 MVEYFGEQLDGFAFTQNGWVQSYGSRCVKPPIIYGDVSRPEPMTVEWIKYAQSLTDKPVKGMLTGPVTILNWSFVRDDQP 571 (758)
T ss_pred hHHHHHHhCCCeeecCCceeeeeCCcCCCCCeeeCCCcCCCCCchHHHHHHHhccCCCCcEEEecHHHHHHHHhcccCCC
Confidence 89999999999999889999999999999999999999999998999999999999999999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh
Q 024250 81 RHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND 160 (270)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~ 160 (270)
+.+++.+|+.+|++++++|.++||++||||||+|...++....+++.+++++++++|.++++++.++++++|+||||+.+
T Consensus 572 ~~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~~~~i~tH~C~g~~~~ 651 (758)
T PRK05222 572 REETARQIALAIRDEVLDLEAAGIKIIQIDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGVKDETQIHTHMCYSEFND 651 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeccChHH
Confidence 99999999999999999999999999999999999888776667888999999999999999987788999999999999
Q ss_pred HHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCC
Q 024250 161 IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240 (270)
Q Consensus 161 ~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl 240 (270)
+++.|.++++|+|++|+++++.+.|+.|.+. +.++.|++||||++++++|++|+++++|+++++++|.+++||+|||||
T Consensus 652 i~~~i~~l~vD~~~lE~~rs~~e~L~~~~~~-~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v~~e~l~v~PdCGl 730 (758)
T PRK05222 652 IIDAIAALDADVISIETSRSDMELLDAFEDF-GYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVIPAERLWVNPDCGL 730 (758)
T ss_pred HHHHHHhCCCCEEEEEecCCCchhHHHhhcc-CCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCChheEEEeCCCCC
Confidence 9999999999999999988777889999875 346789999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHh
Q 024250 241 KTRKYTEVKPALSNMVAAAKLLRTQLA 267 (270)
Q Consensus 241 ~~~~~~~a~~kL~~l~~~a~~~~~~~~ 267 (270)
.+++++.+++||++|+++|+.+|+++.
T Consensus 731 ~t~~~~~~~~kL~~mv~aa~~~r~~~~ 757 (758)
T PRK05222 731 KTRGWEETIAALKNMVAAAKELRAELA 757 (758)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999874
No 3
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=1.2e-54 Score=425.25 Aligned_cols=270 Identities=97% Similarity=1.478 Sum_probs=252.4
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCc
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQP 80 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~ 80 (270)
|++||+++|+||.++.+||+++||++|+++|+|+|+|++++|+++++++++++.+++|+|++||||+|++.|+.+++|.+
T Consensus 497 mv~~F~e~L~Gf~~~~~g~v~~~g~~~~r~p~i~G~I~~~~~~~v~~~~~aq~~t~~~vK~~ltGP~Ti~~~s~~r~~~~ 576 (766)
T PLN02475 497 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSVAQSMTKRPMKGMLTGPVTILNWSFVRNDQP 576 (766)
T ss_pred hHHHHHHhCCCeeecCCceEEeeCCcCCCCCeEeccccCCCCCCHHHHHHHHhccCCccceEEecHHHHHhhhhcccCCC
Confidence 89999999999999889999999999999999999999999999999999999988999999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh
Q 024250 81 RHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND 160 (270)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~ 160 (270)
+++++.+|+.+|++++++|.++||++||||||+|...++....++++++++++++++.+.++++.+++|++|+||||+++
T Consensus 577 ~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~~~~~~~~l~~av~af~~~~~~v~~~~~I~~H~C~gnf~~ 656 (766)
T PLN02475 577 RHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND 656 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcCCcCccCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEecCCcHH
Confidence 99999999999999999999999999999999999877766556788999999999999998876688999999999999
Q ss_pred HHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCC
Q 024250 161 IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240 (270)
Q Consensus 161 ~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl 240 (270)
+++.|.++++|.+++|+.+++.+.++.|++..+.++.|++||+|++++.+|++|+++++|+++++++|++++||+|||||
T Consensus 657 I~~~i~~l~~D~~~~E~~rs~~~~l~~l~~~~~~~~~IglGViD~~s~~ves~Eei~~rI~~a~~~v~~e~l~vnPDCGl 736 (766)
T PLN02475 657 IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 736 (766)
T ss_pred HHHHHHhCCCCEEEEEcCCCChhhhHHHHhhcCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCCcceEEEcCCCCc
Confidence 99999999999999999887677788886522457889999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHhhcC
Q 024250 241 KTRKYTEVKPALSNMVAAAKLLRTQLASAK 270 (270)
Q Consensus 241 ~~~~~~~a~~kL~~l~~~a~~~~~~~~~~~ 270 (270)
.+++++.+..||++||++|+.+|+++..++
T Consensus 737 ~tr~~~~~~~kL~~mv~aa~~~r~~~~~~~ 766 (766)
T PLN02475 737 KTRKYPEVKPALKNMVAAAKLLRAQLASAK 766 (766)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999987553
No 4
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=6.6e-53 Score=381.85 Aligned_cols=253 Identities=27% Similarity=0.442 Sum_probs=228.2
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCc
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQP 80 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~ 80 (270)
|+.||+++|+||++...++.+++++.+++.|.|+|+|++.+|+++++++++++.++.++|+++|||+|++.++.+.+|.+
T Consensus 67 ~~~~f~~~l~G~~~~~~~~~~~~~~~~~~~p~v~G~i~~~~~~~~~~~~~~~~~~~~~vK~~ipgP~tl~~~~~~~~Y~~ 146 (339)
T PRK09121 67 FVTTFIEHLSGVDFEKRETVRIRDRYDASVPTVVGAVSRQKPVFVEDAKFLRQQTTQPIKWALPGPMTMIDTLYDDHYKS 146 (339)
T ss_pred HHHHHHHhCCCceeecCCcceecccccCCCCEEEEecCCCCCCcHHHHHHHHhccCCCceEEeCcHHHHHHHhccccCCC
Confidence 68999999999998777788888333568999999999988999999999999988899999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCc--
Q 024250 81 RHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF-- 158 (270)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~-- 158 (270)
+++++++|+.+|++++++|.++||++||||||+|+..+ +...+.+++++|.++++++ ..+++|+||||+
T Consensus 147 ~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~-------~~~~~~~v~~~n~~~~g~~--~~v~~HvC~G~~~~ 217 (339)
T PRK09121 147 REKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVFF-------DEVNDWGVAALERAIEGLK--CETAVHICYGYGIK 217 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhhh-------HHHHHHHHHHHHHHHcCCC--CceEEEEeCCCCCC
Confidence 99999999999999999999999999999999999532 2347888999999999997 467899999975
Q ss_pred ----------------hhHHHHHHhCCCCEEEEEccCC--CchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHH
Q 024250 159 ----------------NDIIHSIIDMDADVITIENSRS--DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRI 220 (270)
Q Consensus 159 ----------------~~~~~~l~~~~vd~l~ld~~~~--~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i 220 (270)
.++++.|.++++|++++|+.+. +.+.++.++ ++.|++||||++++.+|++|+|++||
T Consensus 218 ~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~l~~~~-----~~~v~lGvvd~k~~~lE~~e~I~~rI 292 (339)
T PRK09121 218 ANTDWKKTLGSEWRQYEEAFPKLQKSNIDIISLECHNSRVPMDLLELIR-----GKKVMVGAIDVASDTIETPEEVADTL 292 (339)
T ss_pred CccccccccccccccHHHHHHHHHhCCCCEEEEEecCCCCCcHHHHhcc-----cCeEEeeeEeCCCCCCCCHHHHHHHH
Confidence 3788999999999999999753 355666663 46899999999999999999999999
Q ss_pred HHHhccccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHh
Q 024250 221 NKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 267 (270)
Q Consensus 221 ~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~~~~~~ 267 (270)
+++++++++++++++|||||+++|++.||+||++|+++++.++++++
T Consensus 293 ~~a~~~v~~~~l~lspdCGf~~l~~~~a~~KL~~l~~~a~~~~~~~~ 339 (339)
T PRK09121 293 RKALQFVDADKLYPCTNCGMAPLSRDVARGKLNALSAGAEIVRRELA 339 (339)
T ss_pred HHHHHhCCHHHEEECCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999874
No 5
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-52 Score=374.55 Aligned_cols=262 Identities=59% Similarity=0.914 Sum_probs=246.5
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCc
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQP 80 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~ 80 (270)
|++||+++|+||.++.++|+++||++++++|+|.|++++..|.+++++.++++.+.+|+|++||||+|++.|+.+.+|.+
T Consensus 69 mv~~F~e~l~G~~~~~~~~v~~~~~~~~r~p~i~g~v~~~~~~~v~~~~~a~~~~~~~~K~~ltGP~ti~~~s~~~~~~~ 148 (330)
T COG0620 69 MVEYFAEKLDGVKFTQNGWVRSYGSRCYRPPIIIGDVSRPEPMTVEEFLYAQSLTEKPVKGMLTGPVTILLWSFNRYYIS 148 (330)
T ss_pred HHHHHHHHcCCeeeccCCcEEEeccEEeeCceEecccccCCCCcchhhhhhhhccCccceeeeccHHhhHhhhccccCCC
Confidence 89999999999998889999999999999999999999999999999999999878999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh
Q 024250 81 RHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND 160 (270)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~ 160 (270)
+.+++++++.+|++++++|.++|+.+||||||+|...++... + +++++++.++++.++++.+.+++|++|+|+|+++.
T Consensus 149 ~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~d~~i~~HiCy~e~~~ 226 (330)
T COG0620 149 REELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRR-D-DDYLEWAVEAINLAAAGVGADTQIHLHICYSEFND 226 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCcccc-c-hHHHHHHHHHHHHHHhcCCCCcEEEEEEECCcccc
Confidence 999999999999999999999999999999999999887665 4 57899999999999998887789999999999999
Q ss_pred HHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCC
Q 024250 161 IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240 (270)
Q Consensus 161 ~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl 240 (270)
+++.+..+++|++++|..+++.+.++.+... ..++.+++|++|.+++.+|+++++.++|+++++.++++++||+|||||
T Consensus 227 ~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~~-~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~~~~~~e~~~vnPDCGl 305 (330)
T COG0620 227 IPDAIEALDADVIDIETSRSRMELLEVLEEV-KYDKEIGLGVVDIHSPKVESVEEIAARIRKALERVPPERLYVNPDCGL 305 (330)
T ss_pred hhHHHhhcCCcEEeeeccccccchhHHHHhc-cCCCeeecceEecCCCCcCCHHHHHHHHHHHHHhCChheEEEcCCCCc
Confidence 9999999999999999988666677888765 357899999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHHH
Q 024250 241 KTRKYTEVKPALSNMVAAAKLLRTQ 265 (270)
Q Consensus 241 ~~~~~~~a~~kL~~l~~~a~~~~~~ 265 (270)
.++++..|++||++|+++++.+|++
T Consensus 306 ~~~~~~~a~~kL~nmv~a~~~~r~e 330 (330)
T COG0620 306 KTLPREIAEAKLENMVKAAKEIREE 330 (330)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999874
No 6
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=1.5e-51 Score=404.75 Aligned_cols=264 Identities=72% Similarity=1.175 Sum_probs=244.7
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCc
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQP 80 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~ 80 (270)
|++||.+.|+||.++++||+++||++++++|+|+|++++++|+.+++++++++.+++++|++|+||+|++.|++..++.+
T Consensus 486 ~v~~F~e~L~G~~~~~~G~v~~~g~~~v~~P~i~g~v~~~~~~~v~~~~~aq~lt~~~vK~~LtGPvT~l~~s~~r~d~~ 565 (750)
T TIGR01371 486 MVEYFGEKLAGFAFTQNGWVQSYGSRCVRPPIIYGDVSRPKPMTVKWSVYAQSLTSKPVKGMLTGPVTILNWSFVRDDIP 565 (750)
T ss_pred HHHHHhhcCCcEEEecCcceeecCCcCCCCCEEeCCCCCCCCCchHHHHHHHhccCCCCceEEechHHHHhhhhhccCCC
Confidence 79999999999999889999999999999999999999989999999999999987899999999999999998776778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh
Q 024250 81 RHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND 160 (270)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~ 160 (270)
+.+++.+|+.+|++++++|.++|+++||||||+|..+++....++..+.+++++++|.++++++.++.+++|+||||+++
T Consensus 566 ~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~ 645 (750)
T TIGR01371 566 RKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNE 645 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHH
Confidence 99999999999999999999999999999999999887665457788899999999999999876678999999999999
Q ss_pred HHHHHHhCCCCEEEEEccCCCchhHHHhhh-cccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCC
Q 024250 161 IIHSIIDMDADVITIENSRSDEKLLSVFRE-GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCG 239 (270)
Q Consensus 161 ~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~-~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cg 239 (270)
+++.|.++++|+|++|+.+++.+.|+.+.+ . ..++.+++||||++|+|+++++++.++|++++++++.+++||+||||
T Consensus 646 i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~-~~~~~ig~GVvD~~s~~ve~~eei~~~i~~a~~~i~~erl~vsPdCG 724 (750)
T TIGR01371 646 IIESIADLDADVISIEASRSDMELLSAFKNGF-GYPNGIGPGVYDIHSPRVPSVEEMADLIEKALQVLPAERLWVNPDCG 724 (750)
T ss_pred HHHHHHhCCCCEEEEEecCCChhHHHHhhhhc-ccCCeEEEEEEeCCCCCcCCHHHHHHHHHHHHHhcCcceEEEeCCCC
Confidence 999999999999999998876678888865 2 23567999999999999999999999999999999889999999999
Q ss_pred CCCCCHhHHHHHHHHHHHHHHHHHHH
Q 024250 240 LKTRKYTEVKPALSNMVAAAKLLRTQ 265 (270)
Q Consensus 240 l~~~~~~~a~~kL~~l~~~a~~~~~~ 265 (270)
|.+++++.+.+||++|+++|+.+|++
T Consensus 725 L~tr~~~~~~~~L~~mv~aa~~~r~~ 750 (750)
T TIGR01371 725 LKTRNWEEVIASLKNMVEAAKEAREQ 750 (750)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999863
No 7
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.7e-48 Score=351.96 Aligned_cols=247 Identities=14% Similarity=0.152 Sum_probs=216.9
Q ss_pred ChHHHhhcCCCceeecccceeecCCcc-ccCCEEEeeccCCC-CCcHHHHHHHHhcc-----CCCcccccchHHHHHhhh
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRC-VKPPIIYGDVSRPK-AMTVFWSSLAQSMT-----ARPMKGMLTGPVTILNWS 73 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~-~~~p~i~~~i~~~~-~~~~~~~~~~~~~~-----~~~vK~~l~GP~Tla~~~ 73 (270)
|+.+|++.++|++. .++.++|++|| |++|+|+|++++.. +.++++++++++.+ ++++|++++||+||+.++
T Consensus 67 ~~~~f~~~~~G~~~--~~~~k~f~~ny~y~~P~v~g~i~~~~~~~~~~~~~~ak~~~~~~~~~~~~K~vl~GP~T~~~~s 144 (326)
T PRK08575 67 IFDPTISFISGVEK--GGLQRFYDNNFYYRQPVIKEKINLKEENPYLQWLESAREIKEEVSLESKLKAVLPGPLTYAVLS 144 (326)
T ss_pred HHHHHHHHcCCccc--CceeEecCCCceeeCeEEEeeecCCCCCccHHHHHHHHHhHhccCCCCCccEEEecHHHHHHHh
Confidence 68899999999975 57899999885 68999999999874 45899999999873 248999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCcc-ccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEe
Q 024250 74 FVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAAL-REGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTH 152 (270)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH 152 (270)
++.+|.+.++++.++++++++++++|.+ ||+|||||||+| +.+++ ....+.+.++++++.++++ .+++||
T Consensus 145 ~~~~Y~~~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~------~~~~~~~~~a~~~~~~~~~--~~i~l~ 215 (326)
T PRK08575 145 DNEYYKNLIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIK------RDTLEKLPEVYKTMAKNVN--IEKHLM 215 (326)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCC------HHHHHHHHHHHHHHHhcCC--CCEEEE
Confidence 9888889999999999999999999999 999999999999 76542 1346888899999999884 568999
Q ss_pred eccCCc-hhHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCc
Q 024250 153 MCYSNF-NDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNI 231 (270)
Q Consensus 153 ~c~g~~-~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~ 231 (270)
+|||.. ..+++.|.+++||+|++|+++++ ++++.+.+.. .++.|++||||++|+++|++++|+++|+++++ +++++
T Consensus 216 tyfg~~~~~~~~~l~~~~vd~l~ld~~~~~-~~l~~~~~~~-~~k~l~~GviD~rn~~vE~~eev~~~i~~~~~-~~~~~ 292 (326)
T PRK08575 216 TYFEINNLKRLDILFSLPVTYFGIDVIENL-KKLGRVYTYL-KGRKVYLGILNARNTKMEKISTIRRIVNKVKR-KGVSD 292 (326)
T ss_pred CCCCCccccHHHHHhcCCCcEEEEEecCCh-hHHHHHHhhC-CCCEEEEEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCe
Confidence 999942 25899999999999999998754 4567776542 27889999999999999999999999999999 89999
Q ss_pred eEecCCCCCCCCCHhHHHHHHHHHHHHHHHH
Q 024250 232 LWVNPDCGLKTRKYTEVKPALSNMVAAAKLL 262 (270)
Q Consensus 232 l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~ 262 (270)
++|+|||||.+++++.|++||++|+++ +.+
T Consensus 293 l~v~pdcgl~~lp~~~a~~KL~~l~~~-~~~ 322 (326)
T PRK08575 293 IIVGNNTLFDFIPEVVAVKKLKLLGKL-EKL 322 (326)
T ss_pred EEEeCCCCcccCcHHHHHHHHHHHHHH-Hhh
Confidence 999999999999999999999999998 554
No 8
>PRK04326 methionine synthase; Provisional
Probab=100.00 E-value=5.2e-48 Score=350.17 Aligned_cols=254 Identities=34% Similarity=0.576 Sum_probs=229.6
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhcc-CCCcccccchHHHHHhhhccCCCC
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMT-ARPMKGMLTGPVTILNWSFVRNDQ 79 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~-~~~vK~~l~GP~Tla~~~~~~~~~ 79 (270)
|..||+++++|+.+ .+++++|+++++++|.|+|++++.+|.++++++++++.+ +.++|++++||+|++.++.+..|.
T Consensus 73 ~~~~f~~~~~G~~~--~~~~~~~~~~~~~~P~v~g~~~~~~~~~l~~~~~~~~~~~~~~vk~~l~GP~Tla~~~~~~~y~ 150 (330)
T PRK04326 73 MVEYFAERIEGFKF--YGPVRVWGNNYFRKPSVVGKIEYKEPMLVDEFEFAKSVTYTRPVKVPITGPYTIAEWSFNEYYK 150 (330)
T ss_pred HHHHHHHhCCceec--cCceeccccccccCCeEEEeccCCCCCcHHHHHHHHhcccCCCceEeccCHHHHHhhcccccCC
Confidence 47899999999986 467888998888889999999988899999999999987 789999999999999888777788
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch
Q 024250 80 PRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN 159 (270)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~ 159 (270)
+..+++.++++++++++++|.++|+++||||||+++.. +.. .+++.+++++++++++ ..++||+|||++.
T Consensus 151 ~~~e~~~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~-------~~~-~~~~~~~l~~~~~~~~--~~v~lH~C~G~~~ 220 (330)
T PRK04326 151 DKEELVFDLAKVINEEIKNLVEAGAKYIQIDEPALATH-------PED-VEIAVEALNRIVKGIN--AKLGLHVCYGDYS 220 (330)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCchhhcC-------HHH-HHHHHHHHHHHHhCCC--CEEEEEEeCCCcH
Confidence 88999999999999999999999999999999999852 233 4888999999999885 5689999999999
Q ss_pred hHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCC
Q 024250 160 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCG 239 (270)
Q Consensus 160 ~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cg 239 (270)
++++.|.++++|+|++|+.+++.+.++.+++. ..++.+++|+||+++++++++|+++++++++++.++.++++|+|+||
T Consensus 221 ~~~~~l~~~~vd~i~~d~~~~~~~~l~~~~~~-~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~~~~~~~~lsp~Cg 299 (330)
T PRK04326 221 RIAPYILEFPVDQFDLEFANGNYKLLDLLKEY-GFDKELGLGVIDVHSARVESVEEIKEAIKKGLEYVPPEKLYINPDCG 299 (330)
T ss_pred HHHHHHHhCCCCEEEEEeCCCCchhHHHhhcc-CCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCC
Confidence 99999999999999999987555677888764 23789999999999999999999999999999988889999999999
Q ss_pred CCCCCHhHHHHHHHHHHHHHHHHHHHHh
Q 024250 240 LKTRKYTEVKPALSNMVAAAKLLRTQLA 267 (270)
Q Consensus 240 l~~~~~~~a~~kL~~l~~~a~~~~~~~~ 267 (270)
|++.+++.+++||++|+++++.+++++.
T Consensus 300 l~~~~~~~a~~kl~~l~~~a~~~~~~~~ 327 (330)
T PRK04326 300 LKLLPREIAYQKLVNMVKATREVREELD 327 (330)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999874
No 9
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=100.00 E-value=1.7e-47 Score=346.05 Aligned_cols=258 Identities=37% Similarity=0.557 Sum_probs=217.8
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCc
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQP 80 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~ 80 (270)
|+.||+++|+||.....++++.|++.+++.|+++|++.+.+|...+++.+++..+..++|.+++||+|++.++.+.+|.+
T Consensus 65 ~~~~f~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vK~~i~gP~tl~~~~~~~~y~~ 144 (324)
T PF01717_consen 65 FHSYFAERLDGFGDTLNGDVQSFGERYYRPPIVVGKISRKKPFAVEEFKYAQSLTDKPVKGTITGPSTLADPSANRYYKD 144 (324)
T ss_dssp TTHHHHTTSEEEEEESSEEEEEETTEEEEEEEEEEEEEESS-SSHHHHHHHHHT-SSSBEEEEE-HHHHHHTSEESSSS-
T ss_pred hhhhhhhhccCceeeccccceecccccccceEEecccccCCcchhHHHHHHHhccccccccccCHHHHhhchhccccCCC
Confidence 78999999999954557889999998888899999999999999999999999988899999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHH--HHHHHHHHHhcCCCCCceEEEeeccCCc
Q 024250 81 RHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLD--WAVHSFRITNCGVQDTTQIHTHMCYSNF 158 (270)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~lH~c~g~~ 158 (270)
..+++.+++++|++++++|.++||++||||||+|+...+..........+ ...+.++.+.++. +..+++|+|+||+
T Consensus 145 ~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v~~H~C~~~~ 222 (324)
T PF01717_consen 145 REELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEAVAAEALNRAVKGE--DATVGVHVCRGNY 222 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHHHHHHHHHHTTSTT--TSEEEEEESSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHHHHHHHHHhccCCC--CCEEEEEecCccc
Confidence 99999999999999999999999999999999998766543212222222 3356777776654 4678999999999
Q ss_pred hhHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 159 NDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 159 ~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
...++.|.++++|++++|+.+.+...++.|++ ++.++.|++||||+++..+|++++|++||++++++++.+++++||+|
T Consensus 223 ~~~~~~l~~~~vd~~~lE~~~~~~~~l~~l~~-~~~~k~v~lGvv~~~~~~vE~~e~v~~ri~~a~~~~~~~~l~~sPdC 301 (324)
T PF01717_consen 223 PSILPLLADLNVDAFFLEFADRRAGDLEPLRE-LPSGKKVVLGVVDTKSPEVESPEEVADRIEEALEYVPLEQLWLSPDC 301 (324)
T ss_dssp CTTHHHHHCSS-SEEEEEETSSTTGGGHHCHC-TTTTSEEEEEES-TTSSS--THHHHHHHHHHHHTTS-GGGEEEEESS
T ss_pred hhhHHHHhhcccceEEeecccCCcccHHHHHh-CcCCceEEEEEEcCCCCCcCCHHHHHHHHHHHHhcCccccEEEcCCC
Confidence 87789999999999999998866667888887 36799999999999999999999999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHHHHHHH
Q 024250 239 GLKTRKYTEVKPALSNMVAAAKL 261 (270)
Q Consensus 239 gl~~~~~~~a~~kL~~l~~~a~~ 261 (270)
||+++++++|++||++|+++|++
T Consensus 302 Gfa~~~~~~a~~kL~~~v~aa~~ 324 (324)
T PF01717_consen 302 GFASLTREEARAKLRNMVEAARE 324 (324)
T ss_dssp TSTTS-HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999974
No 10
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=5.3e-47 Score=346.79 Aligned_cols=257 Identities=13% Similarity=0.147 Sum_probs=217.4
Q ss_pred HHhhcCCCceeec-ccceeecCCc-cccCCEEEeeccCC-CCCcHHHHHHHHhcc-CCCcccccchHHHHHhh-----hc
Q 024250 4 YFGEQLSGFAFTA-NGWVQSYGSR-CVKPPIIYGDVSRP-KAMTVFWSSLAQSMT-ARPMKGMLTGPVTILNW-----SF 74 (270)
Q Consensus 4 ~f~~~~~G~~~~~-~~~~~~~~~~-~~~~p~i~~~i~~~-~~~~~~~~~~~~~~~-~~~vK~~l~GP~Tla~~-----~~ 74 (270)
+|+++|+||+... .+.+.++|++ +++.|+|+|+|+++ ++.++++++++++.+ +.++|+++|||.|++.+ +.
T Consensus 75 df~~~l~Gv~~~~~~~g~~f~~~~~~~~~~~v~G~I~~~~~~~~~~~~~~l~~~~~~~~~K~~ipgP~~l~~~~~~~~~~ 154 (368)
T PRK06520 75 DFFDGLQGVERYEAEQGIQFNGVQTKARGVRVTGKLDFPDDHPMLEDFRFLKSISGDATPKMTIPSPSVLHFRGGRKAID 154 (368)
T ss_pred ehhhhcCCeeeecccCceeecCcccccCCeEEEEEecCCCCCchHHHHHHHHhhccCCCCCEEcCcHHHHHhhccccccc
Confidence 5999999988532 1334566665 56789999999987 345589999999886 44789999999999965 56
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCC-------C-ccHHHHHHHHHHHHHHHhcCCCCC
Q 024250 75 VRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLR-------K-SEHAFYLDWAVHSFRITNCGVQDT 146 (270)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~ 146 (270)
+.+|+++++++.+|+.+|++++++|.++||++||||||+|+..++.. . .+++...+.+++++|.++++++.+
T Consensus 155 ~~~Y~~~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d 234 (368)
T PRK06520 155 ATVYPDLDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPAD 234 (368)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 67899999999999999999999999999999999999998755311 1 134455677889999999999877
Q ss_pred ceEEEeeccCCch----------hHHHHH-HhCCCCEEEEEccCC---CchhHHHhhhcccCCCeeeceEecCCCCCCCC
Q 024250 147 TQIHTHMCYSNFN----------DIIHSI-IDMDADVITIENSRS---DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS 212 (270)
Q Consensus 147 ~~i~lH~c~g~~~----------~~~~~l-~~~~vd~l~ld~~~~---~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~ 212 (270)
+.+++|+||||++ ++++.| .++++|++++|+.+. +++.|..+.. .++.|++||||++++.+|+
T Consensus 235 ~~v~~HiC~Gn~~~~~~~~~~y~~i~~~L~~~~~vd~~~lE~~~~r~g~~e~L~~l~~---~~k~v~lGvvd~~~~~vE~ 311 (368)
T PRK06520 235 LTIGLHVCRGNFRSTWISEGGYEPVAETLFGGVNVDAFFLEYDNERAGGFEPLRFIPP---GHQQVVLGLITTKNGELEN 311 (368)
T ss_pred cEEEEEeecCCCCCccccccchhHHHHHHHhhcCCCeEEEEeccCCCCCcchHHHhhh---cCCEEEeeEEeCCCCCCCC
Confidence 8889999999975 889986 589999999999753 3566777654 2578999999999999999
Q ss_pred HHHHHHHHHHHhccccCCceEecCCCCCC------CCCHhHHHHHHHHHHHHHHHHH
Q 024250 213 TEEIADRINKMLAVLETNILWVNPDCGLK------TRKYTEVKPALSNMVAAAKLLR 263 (270)
Q Consensus 213 ~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~------~~~~~~a~~kL~~l~~~a~~~~ 263 (270)
+|+|++||+++++++|+++++++|+|||+ .++++.||+||++|+++|+.++
T Consensus 312 ~e~I~~rI~~a~~~v~~~~l~lspdCGf~s~~~~~~l~~~~~~~KL~~l~~~a~~~w 368 (368)
T PRK06520 312 ADDVKARLAEAAKFVPLEQLCLSPQCGFASTEEGNSLSEEQQWAKLRLVVEIANEVW 368 (368)
T ss_pred HHHHHHHHHHHHHhCCHHHEeeCcccCCCccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999 5799999999999999998874
No 11
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-47 Score=345.50 Aligned_cols=268 Identities=93% Similarity=1.444 Sum_probs=254.9
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCc
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQP 80 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~ 80 (270)
||+||.++|+||.|+.|||+++||.+|+++|+|+|++.++.|+.+.+-.+++..+.+|+|+.++||+|.+.|++.+++..
T Consensus 497 MVeyFGEql~GfaFTvNGWVQSYGSRcVkPPiI~GDvsRPk~MtV~~S~~AQs~TsrPmKGMLTgPvTiL~WSF~R~D~~ 576 (765)
T KOG2263|consen 497 MVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSYAQSMTSRPMKGMLTGPVTILNWSFVRNDQP 576 (765)
T ss_pred HHHHHHhhccceEEEecchhHhhcCcccCCCeeeccccCCCcceeeHHHHHHHHhcCcccccccCceEEEEeccccCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh
Q 024250 81 RHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND 160 (270)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~ 160 (270)
+.+-+..++-+++.++.+|.++|..+||+|||+|..++|++..+++.|+++++++++....+++..++|+.|.||.|+++
T Consensus 577 ~~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR~aE~~~Yl~WAv~aFRi~~sgVqd~TQIHtH~CYSdfnd 656 (765)
T KOG2263|consen 577 RHETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLRKAEHSFYLDWAVHAFRITNSGVQDSTQIHTHMCYSDFND 656 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCCcchhhHHHHHHHHHHHhhhccccccccchhhhhhhhhhccH
Confidence 88899999999999999999999999999999999999998888999999999999999999988889999999999999
Q ss_pred HHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCC
Q 024250 161 IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240 (270)
Q Consensus 161 ~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl 240 (270)
++..+.++..|.+++|..+++.+.|..|++.+..+..+++|+.|.+++++.+.+|+++||.+.+..++.+.+||+|||||
T Consensus 657 i~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~IGpG~~DIHSPRiPs~dE~~erI~~~l~~~~~~~lWvNPDCGL 736 (765)
T KOG2263|consen 657 IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIAERINKMLAVLPQNILWVNPDCGL 736 (765)
T ss_pred HHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCCcCCceecccCCCCCCHHHHHHHHHHHHHhcccccEEECCCcCc
Confidence 99999999999999999998888888898743456789999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHhh
Q 024250 241 KTRKYTEVKPALSNMVAAAKLLRTQLAS 268 (270)
Q Consensus 241 ~~~~~~~a~~kL~~l~~~a~~~~~~~~~ 268 (270)
.++.+......|++|+++|+.+|++|..
T Consensus 737 KTR~~~E~~~~L~~Mv~AAk~~R~Q~~~ 764 (765)
T KOG2263|consen 737 KTRGYTEVKPALKNMVAAAKLIRSQLAS 764 (765)
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHhcc
Confidence 9998888888999999999999999864
No 12
>PRK06233 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=344.88 Aligned_cols=260 Identities=15% Similarity=0.141 Sum_probs=212.5
Q ss_pred ChHHHhhcCCCceeecccceeecCC----ccccCCEEEeeccCC-CCCcHHHHHHHHhcc--CCCcccccchHHHHHhhh
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGS----RCVKPPIIYGDVSRP-KAMTVFWSSLAQSMT--ARPMKGMLTGPVTILNWS 73 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~----~~~~~p~i~~~i~~~-~~~~~~~~~~~~~~~--~~~vK~~l~GP~Tla~~~ 73 (270)
|+.+|+++|+||++. +..+.|+. ..+..|.|+|+|+++ ++.++++++++++.+ +.++|+++|||+|++.+.
T Consensus 73 ~~~~f~~~l~G~~~~--~~~~~~~~~~~~~~~~~~~v~g~i~~~~~~p~~~~~~~~~~~~~~~~~~K~tipgP~~l~~~~ 150 (372)
T PRK06233 73 WHLDFLWGLNGVGKY--EYEDSYKFHGAKTRTDNAELAGKVAFNPDHPFFAAFKYLKSIVPEGVLPKQTIPSPSLLFRDN 150 (372)
T ss_pred HHHHHHhhcCceEee--cCcceeeecCCcCCCCCCEEEEeeccCCCCchHHHHHHHHhhhcCCCceEEEecCcHHhccCc
Confidence 567899999999873 23233321 234579999999984 344589999999986 356899999999998642
Q ss_pred c----cCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCC---cc------HHHHHHHHHHHHHHHh
Q 024250 74 F----VRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRK---SE------HAFYLDWAVHSFRITN 140 (270)
Q Consensus 74 ~----~~~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~---~~------~~~~~~~~~~~~~~~~ 140 (270)
. +..|+++++++.+|+++|++++++|.++||++||||||+|+..+.... .+ .....+.+++++|+++
T Consensus 151 ~~~~~~~~Y~~~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~ 230 (372)
T PRK06233 151 RSDNWPKFYDSWDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKAL 230 (372)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 2 447899999999999999999999999999999999999886532111 11 1223355667999999
Q ss_pred cCCCCCceEEEeeccCCch----------hHHHHHHhCCCCEEEEEccCCC---chhHHHhhhcccCCCeeeceEecCCC
Q 024250 141 CGVQDTTQIHTHMCYSNFN----------DIIHSIIDMDADVITIENSRSD---EKLLSVFREGVKYGAGIGPGVYDIHS 207 (270)
Q Consensus 141 ~~~~~~~~i~lH~c~g~~~----------~~~~~l~~~~vd~l~ld~~~~~---~~~l~~l~~~~~~~~~l~~GvVd~~~ 207 (270)
++++.++.|++|+|+|||+ ++++.|.++++|++++|+.+.. ++.|+.+... +.++.|++||||+++
T Consensus 231 ~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~~L~~~~~~-~~~k~v~lGvid~~~ 309 (372)
T PRK06233 231 ADLPEDLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSFEPLKQIWNN-RDNVRIVLGLITSKF 309 (372)
T ss_pred hCCCcCCEEEEEeeCCCCCCcccccCcHHHHHHHHHhCCCCEEEEecCCCccCccchHHHhhcc-CCCCEEEeeeecCCC
Confidence 9998778899999999987 8999999999999999997532 4445555321 236889999999999
Q ss_pred CCCCCHHHHHHHHHHHhccccCCceEecCCCCCC------CCCHhHHHHHHHHHHHHHHHHH
Q 024250 208 PRIPSTEEIADRINKMLAVLETNILWVNPDCGLK------TRKYTEVKPALSNMVAAAKLLR 263 (270)
Q Consensus 208 ~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~------~~~~~~a~~kL~~l~~~a~~~~ 263 (270)
+.+|++|+|++||+++++++|+++++++|+|||+ .++++.||+||++|+++|+.++
T Consensus 310 ~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCGf~s~~~g~~l~~~~~~~KL~~l~~~a~~~w 371 (372)
T PRK06233 310 PELEDEDEIIARIDEATEYVPLSNLALSTQCGFASTEEGNILTEADQWAKLALVKKIADKVW 371 (372)
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHEEecCCCCCccccccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999 7899999999999999998875
No 13
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=100.00 E-value=4.7e-46 Score=339.64 Aligned_cols=247 Identities=18% Similarity=0.179 Sum_probs=211.6
Q ss_pred HHhhcCCCceeecccceeecCCcc-ccCCEEEeeccC--CCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCC-CC
Q 024250 4 YFGEQLSGFAFTANGWVQSYGSRC-VKPPIIYGDVSR--PKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRN-DQ 79 (270)
Q Consensus 4 ~f~~~~~G~~~~~~~~~~~~~~~~-~~~p~i~~~i~~--~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~-~~ 79 (270)
||.++.+.=.....+|.|||++|| |++|+++|++++ ..+.++++++++++. +.++|++|+||+||+.++++.+ |.
T Consensus 93 yf~~arg~~~~~~~~mtk~f~tNyhY~vPei~~~~~~~~~~~~~l~~~~~a~~~-~~~~K~~i~GP~T~~~ls~~~~~Y~ 171 (360)
T cd03312 93 YFAMARGNQDVPALEMTKWFDTNYHYIVPELSPDTEFKLASNKLLDEYLEAKAL-GINTKPVLLGPVTFLKLSKAKGGGF 171 (360)
T ss_pred HHHHhcCCCCCcchhceeEecCCCceeCcEECCCcccccCcchHHHHHHHHHhc-CCCCcEEEECHHHHHHHhcccccCC
Confidence 466554421223468999999997 589999999997 468899999999998 5799999999999999998766 88
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch
Q 024250 80 PRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN 159 (270)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~ 159 (270)
+..+++++|+++|++++++|.++||+|||||||+|+.+++. ...+.+.+++|.+.++.+. ..++||+|||+..
T Consensus 172 ~~~el~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~------~~~~~~~~~~~~l~~~~~~-~~l~l~tyfg~~~ 244 (360)
T cd03312 172 DRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPE------EWLAAFKRAYEELAKAAPG-LKLLLATYFGSLG 244 (360)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCH------HHHHHHHHHHHHHhcCCCC-CcEEEEecccchH
Confidence 99999999999999999999999999999999999976631 2467788999999887642 5688999999998
Q ss_pred hHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCC
Q 024250 160 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCG 239 (270)
Q Consensus 160 ~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cg 239 (270)
++++.+.+++||+|++|+.++ .+.++.+++..+.++.|++||||++|+|+|++++++++|+++.+++ .++++||||||
T Consensus 245 ~~~~~l~~l~Vd~l~le~~~~-~~~l~~l~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~l~lsp~Cg 322 (360)
T cd03312 245 ENLDLLASLPVDGLHLDLVRG-PENLEAVLKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GDRLVVSPSCS 322 (360)
T ss_pred HHHHHHHcCCCCEEEEEecCC-cccHHHHHhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCcEEEECCCC
Confidence 999999999999999999875 4567777764334788999999999999999999999999999988 79999999999
Q ss_pred CCCCCH----------------hHHHHHHHHHHHHHH
Q 024250 240 LKTRKY----------------TEVKPALSNMVAAAK 260 (270)
Q Consensus 240 l~~~~~----------------~~a~~kL~~l~~~a~ 260 (270)
|.++|+ ++|.+||++++.+++
T Consensus 323 L~~lP~~~~~e~~~~~~~~~~lafa~~k~~e~~~l~~ 359 (360)
T cd03312 323 LLHVPVDLENETKLDPELKSWLAFAKQKLEELALLAR 359 (360)
T ss_pred CcCCCcccccccCCCHHHHhhcchHHHHHHHHHHHhc
Confidence 999643 568899999887764
No 14
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=100.00 E-value=2.5e-45 Score=332.92 Aligned_cols=254 Identities=47% Similarity=0.721 Sum_probs=216.7
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccC-CCcccccchHHHHHhhhccCC--
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTA-RPMKGMLTGPVTILNWSFVRN-- 77 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~-~~vK~~l~GP~Tla~~~~~~~-- 77 (270)
|+.||+++|+||+. .++++++++.+|+.|.+++++++..+.++.+.+++++.+. +++|++++||+|++.++.+..
T Consensus 64 ~~~~f~~~l~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~l~GP~Tla~~~~~~~~~ 141 (332)
T cd03311 64 MVEYFLERLDGFEF--TGWVQSYGSRYYKPPGIVGDVSRRPPMTVEEGKIAQSLTHPKPLKGILTGPVTIPSPSFVRFRG 141 (332)
T ss_pred HHHHHHHhCCceee--ccceeeeccceeeCCeeecccccCCCCeEEEEEEeccCCCCccccccCCCCeeECCchhhcccc
Confidence 78999999999997 4688888888999999999998878888888999888765 899999999999999988765
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC
Q 024250 78 -DQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS 156 (270)
Q Consensus 78 -~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g 156 (270)
|.+.++++++++++|++++++|.++||++||||||+|+..++.. ..+...+.+..+++.+.+. +.+..+++|+|||
T Consensus 142 ~y~~~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~--~~~~~~~~~~~~~~~l~~~-~~~~~v~lHiC~G 218 (332)
T cd03311 142 YYPSREELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLE--PDDLAADYLKWANEALADR-PDDTQIHTHICYG 218 (332)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcc--cHHHHHHHHHHHHHHHHhC-CCCCEEEEEEECC
Confidence 88999999999999999999999999999999999998765332 1112233344444444331 2236789999999
Q ss_pred Cc----------hhHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhcc
Q 024250 157 NF----------NDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAV 226 (270)
Q Consensus 157 ~~----------~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~ 226 (270)
|+ .++++.|.++++|+|++|+.+.....++.+++. +.++.+++||||++++++|+++++++++++++++
T Consensus 219 ~~~~~~~~~~~y~~i~~~l~~~~vd~~~le~~~~~~~~~~~l~~~-~~~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~ 297 (332)
T cd03311 219 NFRSTWAAEGGYEPIAEYIFELDVDVFFLEYDNSRAGGLEPLKEL-PYDKKVGLGVVDVKSPEVESPEEVKDRIEEAAKY 297 (332)
T ss_pred CCcccccccCcHHHHHHHHHhCCCCEEEEEEcCCCCcchHHHHhC-CCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHhh
Confidence 98 789999999999999999977434456777765 3478999999999999999999999999999999
Q ss_pred ccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHH
Q 024250 227 LETNILWVNPDCGLKTRKYTEVKPALSNMVAAAK 260 (270)
Q Consensus 227 ~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~ 260 (270)
++.++++|+|+|||++.++..|++||++|+++++
T Consensus 298 ~~~~~l~lsp~CGl~~~~~~~a~~kl~~~~~~~~ 331 (332)
T cd03311 298 VPLEQLWVSPDCGFATRERGNALTKLENMVKAAL 331 (332)
T ss_pred CCHHHEEECCCCCCCcCCCchhHHHHHHHHHHhh
Confidence 9889999999999999999999999999999875
No 15
>PRK00957 methionine synthase; Provisional
Probab=100.00 E-value=7.3e-44 Score=319.70 Aligned_cols=235 Identities=31% Similarity=0.495 Sum_probs=204.1
Q ss_pred ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCC-CCCcHHHHHHHHhcc-----CCCcccccchHHHHHhhhc
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRP-KAMTVFWSSLAQSMT-----ARPMKGMLTGPVTILNWSF 74 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~-~~~~~~~~~~~~~~~-----~~~vK~~l~GP~Tla~~~~ 74 (270)
|+.+|+++++||+ .|.++|+++++ +|.++++++++++.+ +.++|++++||+||+.++.
T Consensus 62 ~~~~f~~~l~G~~----------------~~~vvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vK~~i~GP~Tla~~~~ 125 (305)
T PRK00957 62 MVEIFASNMPGFD----------------GKRVIGRVEPPAKPITLKDLKYAKKVAKKKDPNKGVKGIITGPSTLAYSLR 125 (305)
T ss_pred hHHHHHhcCCCcc----------------CCeEEEeecCCCCCCcHHHHHHHHHHHhccCCCCceeEEecCHHHHHhhcc
Confidence 6889999999985 15677999997 689999999999875 3589999999999999887
Q ss_pred cC-CCCcH--HHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEE
Q 024250 75 VR-NDQPR--HETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHT 151 (270)
Q Consensus 75 ~~-~~~~~--~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 151 (270)
+. .|.+. .+++.+++++|++++++|.++||++||||||+|+..+. + .+.+.++++.+.++++ ..+++
T Consensus 126 ~~~~y~~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~----~----~~~~~~~~~~~~~~i~--~~v~l 195 (305)
T PRK00957 126 VEPFYSDNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAY----D----LEVAKKAIDIITKGLN--VPVAM 195 (305)
T ss_pred cccccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCc----h----HHHHHHHHHHHHHhhC--CceEE
Confidence 64 45555 78999999999999999999999999999999997541 1 3566788888877775 45789
Q ss_pred eeccCCchhHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCc
Q 024250 152 HMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNI 231 (270)
Q Consensus 152 H~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~ 231 (270)
|+| |++.++++.|.++++|+|++|++++ .++++.+++....++.+++|+||+++.+++++++++++++++++++++++
T Consensus 196 H~C-G~~~~i~~~l~~~~vd~i~ld~~~~-~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~~~~~~~~~ 273 (305)
T PRK00957 196 HVC-GDVSNIIDDLLKFNVDILDHEFASN-KKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEGIEILGAEN 273 (305)
T ss_pred EEC-CCcHHHHHHHHhCCCCEEEEeecCC-CCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHHHHhcCHHH
Confidence 999 8999999999999999999999764 45677776432357899999999999999999999999999999998899
Q ss_pred eEecCCCCCCCCCHhHHHHHHHHHHHHHHHHH
Q 024250 232 LWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 263 (270)
Q Consensus 232 l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~~ 263 (270)
++|||+|||.++|++.+++||++|+++|+.+|
T Consensus 274 l~lsp~CGl~~~~~~~~~~kL~~l~~aa~~~~ 305 (305)
T PRK00957 274 ILIDPDCGMRMLPRDVAFEKLKNMVEAAREIR 305 (305)
T ss_pred EEECCCcCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998764
No 16
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=8.3e-43 Score=343.03 Aligned_cols=250 Identities=17% Similarity=0.175 Sum_probs=214.7
Q ss_pred HHHhhcCCCceeecccceeecCCcc-ccCCEEEeeccC--CCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccC-CC
Q 024250 3 EYFGEQLSGFAFTANGWVQSYGSRC-VKPPIIYGDVSR--PKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVR-ND 78 (270)
Q Consensus 3 ~~f~~~~~G~~~~~~~~~~~~~~~~-~~~p~i~~~i~~--~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~-~~ 78 (270)
.||++++++.++..++|.|||++|| |.+|+++++..+ ..+.++++++++++. +.++|++|+||+||+.++++. +|
T Consensus 88 ~yFa~arG~~~~~~~emtKwFdtNYhY~VPe~~~~~~~~l~~~~~~~e~~~A~~~-g~~~Kpvl~GP~T~l~lsk~~~~y 166 (750)
T TIGR01371 88 TYFAMARGNKDVPALEMTKWFNTNYHYIVPELSPTTEFKLTSNKPLEEYLEAKEL-GIETKPVLLGPITFLKLSKAVEEP 166 (750)
T ss_pred hhHHHhhCCCCcccceeEEEECCCCeeECCEECCCcceecCcchHHHHHHHHHhc-CCCCeEEEECHHHHHHHhCccCCC
Confidence 6888888875666689999999997 589999998876 468899999999988 689999999999999999853 57
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCc
Q 024250 79 QPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 158 (270)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~ 158 (270)
.++.+++++|+++|++++++|.++||+|||||||+|+.+++. ...+.+.++++.+.++.+. .+++||||||++
T Consensus 167 ~~~~~ll~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~------~~~~~~~~ay~~l~~~~~~-~ki~l~tyFg~~ 239 (750)
T TIGR01371 167 FEPLSLLEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSK------EDLAAFKEAYTELSEALSG-LKLLLQTYFDSV 239 (750)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCH------HHHHHHHHHHHHHHhccCC-ceEEEECCCCch
Confidence 889999999999999999999999999999999999976521 2367778888888777653 578999999999
Q ss_pred hhHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 159 NDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 159 ~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
.++++.+.++|||+|++|+++++ ++|+.+....+.+|.|++||||+||+|+++++++.++|+++.+.. ++++|+|||
T Consensus 240 ~~~~~~l~~lpvd~l~lD~v~~~-~~L~~~~~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~~--~~l~v~psC 316 (750)
T TIGR01371 240 GDALEALVSLPVKGIGLDFVHGK-GTLELVKAGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAHV--GKLVVSTSC 316 (750)
T ss_pred HHHHHHHHcCCCCEEEEEeccCc-ccHHHHHhcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhhC--CCEEEeCCC
Confidence 99999999999999999999854 456666432245789999999999999999999999999999854 569999999
Q ss_pred CCCCCCH----------------hHHHHHHHHHHHHHHHHH
Q 024250 239 GLKTRKY----------------TEVKPALSNMVAAAKLLR 263 (270)
Q Consensus 239 gl~~~~~----------------~~a~~kL~~l~~~a~~~~ 263 (270)
||.|.|. ++|.+||.+++.+++.+.
T Consensus 317 sLlhvP~~~~~e~~l~~~~~~~~~fa~~k~~e~~~l~~~~~ 357 (750)
T TIGR01371 317 SLLHVPVDLELETKLDPELKSWLAFAKEKLEELKALKRALN 357 (750)
T ss_pred CcccCCccCcccccCCHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 9998532 579999999999988874
No 17
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=1.1e-42 Score=340.98 Aligned_cols=251 Identities=17% Similarity=0.178 Sum_probs=213.1
Q ss_pred HHhhcCCCceeecccceeecCCcc-ccCCEEEeeccC--CCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccC--CC
Q 024250 4 YFGEQLSGFAFTANGWVQSYGSRC-VKPPIIYGDVSR--PKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVR--ND 78 (270)
Q Consensus 4 ~f~~~~~G~~~~~~~~~~~~~~~~-~~~p~i~~~i~~--~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~--~~ 78 (270)
||+++.+.=++...+|.|||++|| |.+|++.+++++ ..+.++++++++++. +...|++|+||+||+.++++. +|
T Consensus 94 yfamaRG~~~~~a~emtKwFdtNYHY~VPe~~~~~~f~~~~~~~l~e~~eA~~~-g~~~kpVl~GP~T~l~Lsk~~~~~~ 172 (766)
T PLN02475 94 YFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVKFSYASHKAVNEYKEAKAL-GVDTVPVLVGPVSYLLLSKPAKGVD 172 (766)
T ss_pred HHHHhcCCcccccccceEEecCCcceECcEECCCCccccCccchHHHHHHHHHc-CCCCCcEEECHHHHHHHhccccccc
Confidence 565555521333578999999998 589999999984 468899999999987 456788899999999999965 33
Q ss_pred C--cHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC
Q 024250 79 Q--PRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS 156 (270)
Q Consensus 79 ~--~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g 156 (270)
. ++.+++++|+++|++++++|.++||+|||||||+|+.+++. ...+.+.++|+.+.++++. .+++||||||
T Consensus 173 ~~~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~------~~~~~~~~ay~~l~~~~~~-~~i~l~TyFg 245 (766)
T PLN02475 173 KSFDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLES------HKLQAFKTAYAELESTLSG-LNVLVETYFA 245 (766)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCH------HHHHHHHHHHHHHHhccCC-CeEEEEccCC
Confidence 3 48899999999999999999999999999999999976521 3467888999999887753 5789999999
Q ss_pred Cch-hHHHHHHhCC-CCEEEEEccCCCchhHHHhhhc-ccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceE
Q 024250 157 NFN-DIIHSIIDMD-ADVITIENSRSDEKLLSVFREG-VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILW 233 (270)
Q Consensus 157 ~~~-~~~~~l~~~~-vd~l~ld~~~~~~~~l~~l~~~-~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~ 233 (270)
+++ ++++.+.++| ||+|++|+++++ ++|+.+... .+.+|.|++||||+||+|+++++++.++|+++.+.+++++++
T Consensus 246 ~~~~~~~~~l~~lp~Vd~l~lD~v~~~-~~L~~l~~~~~p~~k~L~~GVVDgRNiw~~dl~~~~~~i~~~~~~~~~~~l~ 324 (766)
T PLN02475 246 DVPAEAYKTLTSLKGVTAFGFDLVRGT-KTLDLIKKAGFPSGKYLFAGVVDGRNIWANDLAASLATLQALEGIVGKDKLV 324 (766)
T ss_pred CCCHHHHHHHHcCCCCCEEEEEecCCh-hhHHHHHhccCCCCCeEEEEEEeCCCcccCCHHHHHHHHHHHHHhcCCCcEE
Confidence 998 5999999999 999999999854 677888543 345789999999999999999999999999999988889999
Q ss_pred ecCCCCCCCCCH----------------hHHHHHHHHHHHHHHHHH
Q 024250 234 VNPDCGLKTRKY----------------TEVKPALSNMVAAAKLLR 263 (270)
Q Consensus 234 vsp~Cgl~~~~~----------------~~a~~kL~~l~~~a~~~~ 263 (270)
|+|||||.+.|. ++|.+||.+++.+++.+.
T Consensus 325 v~psCsLlhvP~~~~~e~~l~~~~~~~~afa~~k~~e~~~l~~~~~ 370 (766)
T PLN02475 325 VSTSCSLLHTAVDLVNETKLDKELKSWLAFAAQKVVEVVALAKALA 370 (766)
T ss_pred EeCCCCCccCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHc
Confidence 999999998542 579999999999988873
No 18
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=7.4e-42 Score=336.63 Aligned_cols=238 Identities=19% Similarity=0.212 Sum_probs=206.0
Q ss_pred cccceeecCCccc-cCCEEEeeccCC--CCCcHHHHHHHHhccCCCcccccchHHHHHhhhcc-CCCCcHHHHHHHHHHH
Q 024250 16 ANGWVQSYGSRCV-KPPIIYGDVSRP--KAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFV-RNDQPRHETCYQIALA 91 (270)
Q Consensus 16 ~~~~~~~~~~~~~-~~p~i~~~i~~~--~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~-~~~~~~~~l~~~l~~~ 91 (270)
..+|.+||++||| .+|+++|+++++ .+.++++++++++. +.++|++|+||+||+.++++ ..|.++.+++++|+++
T Consensus 107 ~~emtKwF~tNYhY~VPei~g~~~~~~~~~~~l~e~~~ak~~-g~~~K~vl~GP~T~l~ls~~~~~~~~~~ell~dl~~~ 185 (758)
T PRK05222 107 ALEMTKWFNTNYHYIVPEFDPDTQFKLTSNKLLDEFEEAKAL-GINTKPVLLGPVTFLWLSKSKGEGFDRLDLLDDLLPV 185 (758)
T ss_pred cccceEEecCCCceeCcEEcCCcccccCCCcHHHHHHHHHhC-CCCceEEEccHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 4689999999975 899999999874 68899999999998 78999999999999988875 4567889999999999
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD 171 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd 171 (270)
|++++++|.++||+|||||||+|+.+++. ...+.+.++++.+.+..+. ..++||+|||++.++++.+.+++||
T Consensus 186 y~~~l~~L~~aG~~~IQiDEP~l~~~~~~------~~~~~~~~~y~~l~~~~~~-~~i~l~tyfg~~~~~~~~l~~l~Vd 258 (758)
T PRK05222 186 YAELLAELAAAGAEWVQIDEPALVLDLPQ------EWLEAFKRAYEALAAAKPR-PKLLLATYFGSLNDALDLLASLPVD 258 (758)
T ss_pred HHHHHHHHHHCCCCEEEeeCchhhcCCCH------HHHHHHHHHHHHHhcCCCC-CCEEEEeeccchhhHHHHHHcCCCC
Confidence 99999999999999999999999986632 2356677888888764432 4789999999998889999999999
Q ss_pred EEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCH------
Q 024250 172 VITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKY------ 245 (270)
Q Consensus 172 ~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~------ 245 (270)
+|++|+.++.. .++.++...+.++.|++||||++|+|+|++++++++|+++.+++ ++++|+|||||.+.|.
T Consensus 259 ~l~LD~~~~~~-~l~~l~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e~L~lspsCgL~~vP~~~~~E~ 335 (758)
T PRK05222 259 GLHLDLVRGPE-QLAALLKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV--DRLWVAPSCSLLHVPVDLDAET 335 (758)
T ss_pred EEEEEeeCCcc-chHHHHhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh--ccEEEeCCCCCcCCCccccccc
Confidence 99999987543 46667653345789999999999999999999999999999987 8999999999999754
Q ss_pred ----------hHHHHHHHHHHHHHHHHHH
Q 024250 246 ----------TEVKPALSNMVAAAKLLRT 264 (270)
Q Consensus 246 ----------~~a~~kL~~l~~~a~~~~~ 264 (270)
++|.+||++++.+++.+..
T Consensus 336 ~l~~~~~~~~afa~~k~~e~~~l~~~~~~ 364 (758)
T PRK05222 336 KLDPELKSWLAFAKQKLEELALLARALNG 364 (758)
T ss_pred cCCHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 6899999999999988754
No 19
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.9e-37 Score=274.18 Aligned_cols=195 Identities=20% Similarity=0.296 Sum_probs=172.9
Q ss_pred CCcccccchHHHHHhhhccC-CCCc-HHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHH
Q 024250 57 RPMKGMLTGPVTILNWSFVR-NDQP-RHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVH 134 (270)
Q Consensus 57 ~~vK~~l~GP~Tla~~~~~~-~~~~-~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~ 134 (270)
.+||+.+|||+||+.++++. .|.+ +.+++.+++.+++++++.+.++|+.+||||||+|+.....+ ...+++++
T Consensus 111 ~~VKv~iTGP~tL~~~~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~-----~~~~~~i~ 185 (344)
T PRK06052 111 LEVRVCVTGPTELYLQEFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQ-----FSDDEIIS 185 (344)
T ss_pred CCeEEEecCHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccc-----cCHHHHHH
Confidence 57999999999999999987 7877 88999999999999999999999999999999999765332 13678899
Q ss_pred HHHHH-----hcCCCCCceEEEeeccCCchhHH-HHHHhCC-CCEEEEEccCCCchhHHHhhhcc--cCCCeeeceEecC
Q 024250 135 SFRIT-----NCGVQDTTQIHTHMCYSNFNDII-HSIIDMD-ADVITIENSRSDEKLLSVFREGV--KYGAGIGPGVYDI 205 (270)
Q Consensus 135 ~~~~~-----~~~~~~~~~i~lH~c~g~~~~~~-~~l~~~~-vd~l~ld~~~~~~~~l~~l~~~~--~~~~~l~~GvVd~ 205 (270)
+++.+ .++++ +++++|+ +++ +.+++++ +|.|++|+++++ ++|+.+.+.. ..++.+++||+|+
T Consensus 186 Al~~a~~~a~~~gvd--v~i~lH~------~l~~~~i~~~~~idvi~~E~A~~~-~~L~~l~~~~~e~~dk~ig~GV~dt 256 (344)
T PRK06052 186 ALTVASTYARKQGAD--VEIHLHS------PLYYELICETPGINVIGVESAATP-SYLDLIDKKVLEDTDTFLRVGVART 256 (344)
T ss_pred HHHHHHhhhccCCcc--eEEEEeh------HhhHHHHhcCCCCCEEeeeccCCh-HHHHHHhhhhhhhcCCceEEeEEEc
Confidence 99998 67764 6789998 456 8999999 999999999854 7788887751 2479999999999
Q ss_pred --C------------------------CCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCC-CHhHHHHHHHHHHHH
Q 024250 206 --H------------------------SPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTR-KYTEVKPALSNMVAA 258 (270)
Q Consensus 206 --~------------------------~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~-~~~~a~~kL~~l~~~ 258 (270)
+ ++.+||++++.++|+++++++|++++||+|||||.++ ++..|++||++|+++
T Consensus 257 d~~~~~~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK~~~e~~~A~~KL~nmv~a 336 (344)
T PRK06052 257 DIFSLIAILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLGSWPSQELAFRLLENVAKA 336 (344)
T ss_pred hhhcchhhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCCChhhHHHHHHHHHHHHH
Confidence 7 7889999999999999999999999999999999999 589999999999999
Q ss_pred HHHHHHH
Q 024250 259 AKLLRTQ 265 (270)
Q Consensus 259 a~~~~~~ 265 (270)
++.+|++
T Consensus 337 a~~~r~e 343 (344)
T PRK06052 337 INEFRAE 343 (344)
T ss_pred HHHHHhc
Confidence 9999964
No 20
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=100.00 E-value=1.6e-36 Score=269.44 Aligned_cols=214 Identities=18% Similarity=0.203 Sum_probs=166.2
Q ss_pred HHHhhcCCCceeecccceeecCCccc-cCCEEEeeccCC--CCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCC
Q 024250 3 EYFGEQLSGFAFTANGWVQSYGSRCV-KPPIIYGDVSRP--KAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQ 79 (270)
Q Consensus 3 ~~f~~~~~G~~~~~~~~~~~~~~~~~-~~p~i~~~i~~~--~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~ 79 (270)
.||+++++--++.+.+|.|||++||| ++|++.++.+++ .+..+++++.+++. +..+|++|+||+||+.++++.++.
T Consensus 92 ~yFamARG~~~~~a~eMtKWFdTNYHY~VPE~~~~~~f~l~~~~~~~~~~eA~~~-G~~~kpvL~GP~TfL~Lsk~~~~~ 170 (310)
T PF08267_consen 92 RYFAMARGTDDVPALEMTKWFDTNYHYIVPEITGDTEFKLDSNKLLDEFREAKAL-GINTKPVLPGPVTFLLLSKNEDGS 170 (310)
T ss_dssp HHHHHHHSCCCCT--EEEESTTSS-EEEE-EE-TTS----SCCHHHHHHHHHHHT-TGGEEEEEE-HHHHHHTSEETTCC
T ss_pred heeeeccCCCCCchHHHHHHhccCCCeEceEECCCCceeeCcchHHHHHHHHHhh-hcCCeeEEEcHHHHHHHcCcCCCC
Confidence 48888888666677899999999965 899999987754 56788999999766 578999999999999999998877
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch
Q 024250 80 PRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN 159 (270)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~ 159 (270)
++.+++++|+++|.+++++|.++||.|||||||+|+.+++ +...+.+..+|+.+. ...+.+++|++|||+..
T Consensus 171 ~~~~ll~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~------~~~~~~~~~aY~~L~--~~~~~~ill~TYFg~~~ 242 (310)
T PF08267_consen 171 DPLDLLDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLP------EEWLEAFEEAYEELA--AAPRPKILLATYFGDLG 242 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGC------HHHHHHHHHHHHHHC--CTTTSEEEEE--SS--C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCC------HHHHHHHHHHHHHHh--cCCCCcEEEECCCCchh
Confidence 8889999999999999999999999999999999997552 234666777888875 22347899999999988
Q ss_pred hHHHHHHhCCCCEEEEEccCCCchhHHHhhh-cccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhcc
Q 024250 160 DIIHSIIDMDADVITIENSRSDEKLLSVFRE-GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAV 226 (270)
Q Consensus 160 ~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~-~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~ 226 (270)
+.++.++++||++||+|+.+ +.++++.+.+ ..+.++.|++||||+||+|+++++++.+.++++.+.
T Consensus 243 ~~l~~l~~lpv~~l~lDlv~-~~~~l~~~~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~~ 309 (310)
T PF08267_consen 243 DNLELLLDLPVDGLHLDLVR-GPENLEALLKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLREK 309 (310)
T ss_dssp CHHHHHTTSSESEEEEETTT-HCHHHHHHHHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHHC
T ss_pred hHHHHHhcCCCcEEEeeccC-CcccHHHHHhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHhc
Confidence 99999999999999999998 4566777776 246789999999999999999999999999998754
No 21
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=100.00 E-value=9.6e-36 Score=268.81 Aligned_cols=243 Identities=21% Similarity=0.258 Sum_probs=185.0
Q ss_pred ChHHHhhcCCCceeecccceeecCCcc-ccCCEEEeeccCCCCCcHHHHHHHHhcc--CCCcccccchHHHHHhhhccCC
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSRC-VKPPIIYGDVSRPKAMTVFWSSLAQSMT--ARPMKGMLTGPVTILNWSFVRN 77 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~-~~~p~i~~~i~~~~~~~~~~~~~~~~~~--~~~vK~~l~GP~Tla~~~~~~~ 77 (270)
|+.+|++.+.|++.. .++|++|+ |++|++++++ . .+...+.++.+++.. +.++|++++||+|++.++++.+
T Consensus 63 ~~~~~~~~~~~~~~~----~~~~~~n~~y~~p~~~~~~-~-~~~~~~~~~~~~~~~~~~~~vk~~l~GP~Tla~~~~~~~ 136 (321)
T cd03310 63 MIGRFLEVLVDLETG----TRFFDNNFFYRPPEAKIEA-F-LPLELDYLEEVAEAYKEALKVKVVVTGPLTLALLAFLPN 136 (321)
T ss_pred HHhhHHHHHHHhhcc----cccccccceeccchhcccc-c-ccccHHHHHHHHHhcCCCCceEEEecCHHhHhHhhcccc
Confidence 577888989998742 57788775 6889999987 3 344556666665543 3589999999999999998866
Q ss_pred C--CcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc
Q 024250 78 D--QPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY 155 (270)
Q Consensus 78 ~--~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~ 155 (270)
+ .+.+++++++++.|++++++|.++|+++||||||+++.++.... ...+.+.++++.+.++.. ..+++|+|+
T Consensus 137 ~~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~iqidEP~l~~~~~s~~----~~~~~~~~~~~~~~~~~~--~~~~lHic~ 210 (321)
T cd03310 137 GEPDAYEDLAKSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAGAF----EDLEIVDAALEEVSLKSG--GDVEVHLCA 210 (321)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCcccccccccc----chHHHHHHHHHHHhhccC--CceEEEECC
Confidence 5 57889999999999999999999999999999999997653211 123445556666543222 236899996
Q ss_pred CCchhHHHHHHhCCCCEEEEEccCCC---chhHHHhhhccc-CCCeeeceEecC----CCCCCC--CHHHHHHHHHHHhc
Q 024250 156 SNFNDIIHSIIDMDADVITIENSRSD---EKLLSVFREGVK-YGAGIGPGVYDI----HSPRIP--STEEIADRINKMLA 225 (270)
Q Consensus 156 g~~~~~~~~l~~~~vd~l~ld~~~~~---~~~l~~l~~~~~-~~~~l~~GvVd~----~~~~~e--~~e~v~~~i~~~~~ 225 (270)
+ .+++.|.++++|+||+|+.+.. .++++.+.+. + .++.+++|+||+ +|+|.+ +.+++.++++....
T Consensus 211 ~---~~~~~l~~~~vd~l~~D~~~~~~~~~~~l~~~~~~-g~~~~~lg~gvid~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (321)
T cd03310 211 P---LDYEALLELGVDVIGFDAAALPSKYLEDLKKLLRI-GVRTLILGLVVTDNEAKGRNAWKEIERLEKLVRRLEEPGE 286 (321)
T ss_pred C---CCHHHHHhCCCCEEEEecccCcccchhHHHHHHhc-CCceEEEEeeecCCcccCCCHHHHHHHHHHHHHHhccchh
Confidence 5 4688999999999999998754 3567777553 2 467899999999 999987 44444444433322
Q ss_pred cccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHH
Q 024250 226 VLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAK 260 (270)
Q Consensus 226 ~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~ 260 (270)
.+ .++++|+|||||.+++++.|++||++|+++++
T Consensus 287 ~~-~~~~~vtpscgL~~~p~~~a~~kl~~l~~~a~ 320 (321)
T cd03310 287 VL-DEILYLTPDCGLAFLPPQEARRKLALLAEAAR 320 (321)
T ss_pred hh-hhceeeCCCccCCCCCHHHHHHHHHHHHHHhh
Confidence 12 38899999999999999999999999999875
No 22
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=99.98 E-value=9.8e-32 Score=242.91 Aligned_cols=253 Identities=17% Similarity=0.150 Sum_probs=209.8
Q ss_pred HHHhhcCCCceeecccceeecCCccc-cCCEEEeeccCC--CCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCC--
Q 024250 3 EYFGEQLSGFAFTANGWVQSYGSRCV-KPPIIYGDVSRP--KAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRN-- 77 (270)
Q Consensus 3 ~~f~~~~~G~~~~~~~~~~~~~~~~~-~~p~i~~~i~~~--~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~-- 77 (270)
-||+|+++..++.+++|++|||+||+ -+|++..++.++ .+..++++.++|+. +....+++.||+|++.+++...
T Consensus 94 ~yFsM~RG~~~v~A~EM~KWFDsNyHyi~Pe~~~e~~F~~~s~KavdEf~EAK~l-Gi~T~PVLvGPvsYL~l~K~aKg~ 172 (765)
T KOG2263|consen 94 VYFSMARGNASVPAMEMTKWFDSNYHYIVPELGPEVNFSYASHKAVDEFKEAKAL-GIDTVPVLVGPVSYLLLSKAAKGV 172 (765)
T ss_pred hhhhhhcCCCCcchHHHhhhhccCceeeccccCCccceeeccchhHHHHHHHHhc-CCcccceeecchhhhheeccccCc
Confidence 48999999999999999999999976 678887776654 67788999999987 5556678999999998876532
Q ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc
Q 024250 78 --DQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY 155 (270)
Q Consensus 78 --~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~ 155 (270)
.....+|+..|.++|.+.++.|.++|+.|||||||.|+.+++.. -++...+++..+-+... ...+.+.+||
T Consensus 173 ~ks~~~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~------~l~a~k~AY~~l~~~~~-~~~v~l~TYF 245 (765)
T KOG2263|consen 173 DKSFELLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGE------KLQAFKGAYAELESTLS-GLNVLLATYF 245 (765)
T ss_pred ccccchHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHH------HHHHHHHHHHHHHhhcc-ccceeehhhh
Confidence 33567889999999999999999999999999999999877542 24444556655544444 2567899999
Q ss_pred CCchhH-HHHHHhCC-CCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceE
Q 024250 156 SNFNDI-IHSIIDMD-ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILW 233 (270)
Q Consensus 156 g~~~~~-~~~l~~~~-vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~ 233 (270)
|+.... ++.|..++ +.++++|+.++ .+.++..+...+.++.++.||||+||+|..+.....+.++++...+|.+++.
T Consensus 246 ~~v~~~a~~~lk~L~~v~~~~~D~VR~-~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~dkvv 324 (765)
T KOG2263|consen 246 ADVPAEAYKTLKSLKGVTAFGFDLVRG-PETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGKDKVV 324 (765)
T ss_pred ccCCHHHHHHHhCCcceeeeeeeeeec-hhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhccceEE
Confidence 998654 88999999 99999999984 5566766665578999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCH----------------hHHHHHHHHHHHHHHHHHH
Q 024250 234 VNPDCGLKTRKY----------------TEVKPALSNMVAAAKLLRT 264 (270)
Q Consensus 234 vsp~Cgl~~~~~----------------~~a~~kL~~l~~~a~~~~~ 264 (270)
|++||+|-+.+. .+|.+|+.++..+++.+..
T Consensus 325 VstS~SlLHt~vdL~nE~kld~EiK~w~aFA~qK~~Ev~~l~Ka~sg 371 (765)
T KOG2263|consen 325 VSTSCSLLHTAVDLINETKLDAEIKSWLAFAAQKVVEVNALAKALSG 371 (765)
T ss_pred EeechhhhccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999988421 6888999999888876643
No 23
>PRK06438 hypothetical protein; Provisional
Probab=99.97 E-value=8.5e-31 Score=227.57 Aligned_cols=218 Identities=6% Similarity=-0.036 Sum_probs=181.8
Q ss_pred ChHHHhhcCCCceeecccceeecCCc-cccCCEEEeeccCCCCCcHHHHHHHHhc-------cCCCcccccchHHHHHhh
Q 024250 1 MVEYFGEQLSGFAFTANGWVQSYGSR-CVKPPIIYGDVSRPKAMTVFWSSLAQSM-------TARPMKGMLTGPVTILNW 72 (270)
Q Consensus 1 ~~~~f~~~~~G~~~~~~~~~~~~~~~-~~~~p~i~~~i~~~~~~~~~~~~~~~~~-------~~~~vK~~l~GP~Tla~~ 72 (270)
|+.+|++.++|++. +|.+|||+|| |||.|+|.|++.+ ..+.++++.++++ .+.++|++||||+||+.+
T Consensus 66 i~~~~~~~~~gve~--ggL~Ry~dNN~fYR~Pvv~g~l~~--~~~~~~~~~~~e~~~~~~~~~~~~lkavLPGPyT~a~l 141 (292)
T PRK06438 66 IFRPISLSVNGVSL--GPLTRYLETNTFYRIPEISGVKDF--NRELDKFQKIDENPPLPLYHLKKGISIFLPSPYSFYKM 141 (292)
T ss_pred hhhhHHHHhcCccc--cceeEEeccCceeecceecCCCCc--chhhHHHHHHHhcccccccCCCCCceEEecCchhHHHh
Confidence 67899999999986 7999999876 8899999999998 5677888888875 235779999999999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEe
Q 024250 73 SFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTH 152 (270)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH 152 (270)
+.+.+|++..++..+++++++.++++|. ++.|++.||+|. .-+.. +.++.+.+ +..++||
T Consensus 142 S~ne~Y~d~~e~~~aia~~l~~e~~al~---v~~v~l~EPsl~-~~~~~------------~~~e~~~e----~~~v~l~ 201 (292)
T PRK06438 142 SKTLEKIDYNDFYKKLVNIYSRILDIFS---IKNVVLLDVFYY-KNDNY------------SYLSDLAK----KYNVILI 201 (292)
T ss_pred hcccccCCHHHHHHHHHHHHHHHHHhCC---cceEEEecchhc-CCCch------------hhhhhccc----cccEEEE
Confidence 9999999999999999999999999876 889999999998 32111 12222222 2457889
Q ss_pred eccCCchhHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCce
Q 024250 153 MCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNIL 232 (270)
Q Consensus 153 ~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l 232 (270)
||||.-..+++.|+ +++|++ + + .+.+..+.++ .+ .+++|+||++|+.+|++++ ++++ -+.+++
T Consensus 202 TYf~~~~~~~~~L~-~~vd~i-v---~--~~~l~~v~ey--~~-~v~lGivdarnTkmE~~e~-~~~i------~~~~~v 264 (292)
T PRK06438 202 TSGNVSKLNFNGLG-HKFESI-V---R--DDEVDYIINK--CS-YPGIKIFSGDNTKMEDLKA-RKEI------SGYDNV 264 (292)
T ss_pred EecCCchhhHHhhc-ccceeE-e---c--cchhhhHHhh--cC-CceeeeeecCcccccCHHH-hhhc------cCcceE
Confidence 99987567889999 999999 3 2 4456667665 34 7999999999999999999 8888 245899
Q ss_pred EecCCCCCCCCCHhHHHHHHHHHHHHH
Q 024250 233 WVNPDCGLKTRKYTEVKPALSNMVAAA 259 (270)
Q Consensus 233 ~vsp~Cgl~~~~~~~a~~kL~~l~~~a 259 (270)
+|+|+|.|.++|...|++||++|.+++
T Consensus 265 ~vt~nt~ldfLP~~~a~~Kl~lL~k~~ 291 (292)
T PRK06438 265 LLTHSDYMDFLPREIADIKVELLGKAG 291 (292)
T ss_pred EEcCCchhhhccHHHHHHHHHHHHhhc
Confidence 999999999999999999999999864
No 24
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=99.96 E-value=6.8e-28 Score=216.11 Aligned_cols=242 Identities=20% Similarity=0.260 Sum_probs=180.8
Q ss_pred hHHHhhcCCCceeecccceeecCCccccCCEEEeec-cCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCC--
Q 024250 2 VEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDV-SRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRND-- 78 (270)
Q Consensus 2 ~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i-~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~-- 78 (270)
+.+|++.|+|.-+ ++.+.....|.+.++. ...-+.++++++.+++..+.|+++.++||+|++.++.+..+
T Consensus 53 ~~~~~ealg~~~~-------~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GP~Tla~~l~~~~~~~ 125 (306)
T cd00465 53 VLKVAQALGEWAF-------RYYSQAPSVPEIDEEEDPFREAPALEHITAVRSLEEFPTAGAAGGPFTFTHHSMSMGDAL 125 (306)
T ss_pred eeehhhhcCceEE-------ecCCCCCCCCCcccCCChhhHHHHHHHHHHHHhccccceEeecCCHHHHHHHHHcccHHH
Confidence 4566777776432 2223233445454444 33347788999999988778999999999999988776432
Q ss_pred -------CcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCC-CceEE
Q 024250 79 -------QPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD-TTQIH 150 (270)
Q Consensus 79 -------~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~ 150 (270)
....++++.+++.++++++++.++|+++||++||.++...+. -.++.|.+++.+.++++++.++. +..++
T Consensus 126 ~~~~~~p~~~~~ll~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~--is~~~~~e~~~p~~k~i~~~i~~~~~~~~ 203 (306)
T cd00465 126 MALYERPEAMHELIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSF--LGPKMFKKFALPAYKKVAEYKAAGEVPIV 203 (306)
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecccccccCCC--CCHHHHHHHHHHHHHHHHHHHhhcCCceE
Confidence 345678899999999999999999999999999999865311 14567888999999999986642 35678
Q ss_pred EeeccCCchhHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCC
Q 024250 151 THMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETN 230 (270)
Q Consensus 151 lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~ 230 (270)
+|+| |+..++++.+.++++|++++|+... +..+..+.. +.+..|..|+.++.. ..++|++.++++++++.+++
T Consensus 204 lH~c-g~~~~~~~~l~~~~~d~~~~d~~~~--d~~~~~~~~-~~~~~i~Ggv~~~~~--~~~~e~i~~~v~~~l~~~~~- 276 (306)
T cd00465 204 HHSC-YDAADLLEEMIQLGVDVISFDMTVN--EPKEAIEKV-GEKKTLVGGVDPGYL--PATDEECIAKVEELVERLGP- 276 (306)
T ss_pred EEEC-CCHHHHHHHHHHhCcceEecccccC--CHHHHHHHh-CCCEEEECCCCcccc--CCCHHHHHHHHHHHHHHhCC-
Confidence 9999 5667889999999999999998751 222333332 222345555544433 46679999999999998865
Q ss_pred ceEecCCCCCCCCCHhHHHHHHHHHHHHHH
Q 024250 231 ILWVNPDCGLKTRKYTEVKPALSNMVAAAK 260 (270)
Q Consensus 231 ~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~ 260 (270)
+.+++|+||+.+.++.. .+||++|+++++
T Consensus 277 ~~il~~~cgi~~~~~~~-~enl~a~v~a~~ 305 (306)
T cd00465 277 HYIINPDCGLGPDSDYK-PEHLRAVVQLVD 305 (306)
T ss_pred CeEEeCCCCCCCCCCCc-HHHHHHHHHHhh
Confidence 89999999999987766 799999999886
No 25
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=99.89 E-value=3.4e-22 Score=181.01 Aligned_cols=204 Identities=18% Similarity=0.206 Sum_probs=162.7
Q ss_pred cHHHHHHHHhccC--CCcccccchHHHHHhhhccCC------CC---cHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccC
Q 024250 44 TVFWSSLAQSMTA--RPMKGMLTGPVTILNWSFVRN------DQ---PRHETCYQIALAIKDEVEDLEKAGINVIQIDEA 112 (270)
Q Consensus 44 ~~~~~~~~~~~~~--~~vK~~l~GP~Tla~~~~~~~------~~---~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP 112 (270)
.++..+.+++..+ .++++.+.||+|++.++.+.. +. ...++++.+++.+.+.++++.++|++.||++||
T Consensus 111 ~l~a~~~l~~~~~~~~~v~g~~~gP~t~a~~l~g~~~~~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~ 190 (330)
T cd03465 111 LLEAIRLLKEELGDRVPVIGAVGGPFTLASLLMGASKFLMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDP 190 (330)
T ss_pred HHHHHHHHHHHhCCCeeeeccCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 3444555554433 688999999999998654421 12 236678888889999999999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHHHHhcCCCC-CceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCchhHHHhhhc
Q 024250 113 ALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD-TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 191 (270)
Q Consensus 113 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~ 191 (270)
..+..+ . .++.|.+++.+.++++++.++. +..+++|+| |++++.++.+.++++|++++|... + +..+++.
T Consensus 191 ~~~~~~-i---sp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~c-G~~~~~~~~l~~~~~d~~~~d~~~-d---l~~~~~~ 261 (330)
T cd03465 191 WASSSI-L---SPEDFKEFSLPYLKKVFDAIKALGGPVIHHNC-GDTAPILELMADLGADVFSIDVTV-D---LAEAKKK 261 (330)
T ss_pred ccccCC-C---CHHHHHHHhhHHHHHHHHHHHHcCCceEEEEC-CCchhHHHHHHHhCCCeEeecccC-C---HHHHHHH
Confidence 876532 2 3567889999999999887753 356899999 899899999999999999999875 3 2333332
Q ss_pred ccCCCeeeceEecCC-CCCCCCHHHHHHHHHHHhccccC--CceEecCCCCCCCCCHhHHHHHHHHHHHHHH
Q 024250 192 VKYGAGIGPGVYDIH-SPRIPSTEEIADRINKMLAVLET--NILWVNPDCGLKTRKYTEVKPALSNMVAAAK 260 (270)
Q Consensus 192 ~~~~~~l~~GvVd~~-~~~~e~~e~v~~~i~~~~~~~~~--~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~ 260 (270)
. .++.+..|.||+. ....+|+|++.+.++++++.+.. ++.+++|+||+.+.++. +||++|+++++
T Consensus 262 ~-g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~p~---enl~a~v~a~~ 329 (330)
T cd03465 262 V-GDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPDTPI---ENIKAMIDAVR 329 (330)
T ss_pred h-CCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCH---HHHHHHHHHHh
Confidence 1 2468899999997 66789999999999999998754 78999999999998888 99999999986
No 26
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=99.88 E-value=1.1e-21 Score=178.77 Aligned_cols=205 Identities=14% Similarity=0.134 Sum_probs=158.6
Q ss_pred CCcHHHHHHHHhccC--CCcccccchHHHHHhhhccC--------CC-CcHHHHHHHHHHHHHHHHHHHHHcCCCEEEec
Q 024250 42 AMTVFWSSLAQSMTA--RPMKGMLTGPVTILNWSFVR--------ND-QPRHETCYQIALAIKDEVEDLEKAGINVIQID 110 (270)
Q Consensus 42 ~~~~~~~~~~~~~~~--~~vK~~l~GP~Tla~~~~~~--------~~-~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiD 110 (270)
+.+++.++.+++..+ .|+++.+.||+|++..+... .+ ....++++.+++.+.++++++.++|++.||+.
T Consensus 121 ~~~l~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~ 200 (340)
T TIGR01463 121 PVVLEAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIA 200 (340)
T ss_pred hhHHHHHHHHHHHcCCceeeeCCCCcHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEec
Confidence 445667777776543 68999999999999855431 11 12344566667788889999999999999999
Q ss_pred cCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCC-CceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCchhHHHhh
Q 024250 111 EAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD-TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFR 189 (270)
Q Consensus 111 EP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~ 189 (270)
||..+..+ . .++.|.+++.+.++++++.++. +...++|+| |+...+++.+.++++|++++|...+ . +..+
T Consensus 201 dp~a~~~~-l---sp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~C-G~~~~~~~~l~~~g~d~ls~d~~~~-l---~~~~ 271 (340)
T TIGR01463 201 DPFASSDL-I---SPETYKEFGLPYQKRLFAYIKEIGGITVLHIC-GFTQPILRDIANNGCFGFSVDMKPG-M---DHAK 271 (340)
T ss_pred CCccCccc-c---CHHHHHHHHHHHHHHHHHHHHhcCCceEEEEC-CCchhhHHHHHHhCCCEEeecCCCC-H---HHHH
Confidence 99865322 1 4677889999999999888642 234589999 8888899999999999999998763 3 3334
Q ss_pred hcccCCCeeeceEecCCC-CCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHHHH
Q 024250 190 EGVKYGAGIGPGVYDIHS-PRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLL 262 (270)
Q Consensus 190 ~~~~~~~~l~~GvVd~~~-~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~ 262 (270)
+.. .++.+..|+||+.. ...+|+|+|.+.++++++. .+.+++|+||+.+.++. +|+++|+++++..
T Consensus 272 ~~~-g~~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~~---~~~Il~~gcgi~~~tp~---eni~a~v~a~~~~ 338 (340)
T TIGR01463 272 RVI-GGQASLVGNLSPFSTLMNGTPEKVKKLAKEVLYN---GGDIVMPGCDIDWMTPL---ENLKAMIEACKSI 338 (340)
T ss_pred HHc-CCceEEEecCChHHHhcCCCHHHHHHHHHHHHHc---CCeEECCCCCCCCCCCH---HHHHHHHHHHHhc
Confidence 331 24567799998854 4579999999999999874 57899999999999997 9999999999864
No 27
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=99.88 E-value=1.1e-21 Score=178.65 Aligned_cols=204 Identities=18% Similarity=0.211 Sum_probs=159.9
Q ss_pred CcHHHHHHHHhcc--CCCcccccchHHHHHhhhccCC------CC---cHHHHHHHHHHHHHHHHHHHHHcCCCEEEecc
Q 024250 43 MTVFWSSLAQSMT--ARPMKGMLTGPVTILNWSFVRN------DQ---PRHETCYQIALAIKDEVEDLEKAGINVIQIDE 111 (270)
Q Consensus 43 ~~~~~~~~~~~~~--~~~vK~~l~GP~Tla~~~~~~~------~~---~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDE 111 (270)
.+++.++.+++.. +.|+.+.+.||||++..+.+.. +. ...++++.+++.+.+.++++.++|++.||++|
T Consensus 122 ~~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d 201 (339)
T PRK06252 122 TVLEAIKILKEKVGEEVPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIAD 201 (339)
T ss_pred HHHHHHHHHHHHcCCcCceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 3455666666544 3689999999999998654310 11 22345666677888899999999999999999
Q ss_pred CccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCchhHHHhhhc
Q 024250 112 AALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 191 (270)
Q Consensus 112 P~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~ 191 (270)
|..+..+ . .++.|.+++.+.++++++.++.. ..++|+| |+....++.+.++++|++++|... + ++..++.
T Consensus 202 ~~a~~~~-l---sp~~f~ef~~p~~~~i~~~i~~~-~~ilH~c-G~~~~~l~~~~~~g~d~~~~d~~~-d---l~~~~~~ 271 (339)
T PRK06252 202 PSASPEL-L---GPKMFEEFVLPYLNKIIDEVKGL-PTILHIC-GDLTSILEEMADCGFDGISIDEKV-D---VKTAKEN 271 (339)
T ss_pred CCccccc-c---CHHHHHHHHHHHHHHHHHHhccC-CcEEEEC-CCchHHHHHHHhcCCCeeccCCCC-C---HHHHHHH
Confidence 9776322 2 46788999999999999988753 5689999 888889999999999999999865 2 2333332
Q ss_pred ccCCCeeeceEecC-CCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHHHHH
Q 024250 192 VKYGAGIGPGVYDI-HSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 263 (270)
Q Consensus 192 ~~~~~~l~~GvVd~-~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~~ 263 (270)
. .++.+..|++|+ .....+|+|+|.++++++++. ...+++|+||+.+.++. +|+++|+++++.++
T Consensus 272 ~-g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~---g~~Il~~gcgi~~~tp~---enl~a~v~a~~~~~ 337 (339)
T PRK06252 272 V-GDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLED---GVDILAPGCGIAPKTPL---ENIKAMVEARKEYY 337 (339)
T ss_pred h-CCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHHc---CCCEEcCCCCCCCCCCH---HHHHHHHHHHHHhc
Confidence 1 246889999999 666789999999999999974 35699999999999997 99999999998764
No 28
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=99.84 E-value=8.3e-20 Score=165.41 Aligned_cols=200 Identities=20% Similarity=0.237 Sum_probs=156.4
Q ss_pred cHHHHHHHHhcc--CCCcccccchHHHHHhhhccC---------CCCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccC
Q 024250 44 TVFWSSLAQSMT--ARPMKGMLTGPVTILNWSFVR---------NDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEA 112 (270)
Q Consensus 44 ~~~~~~~~~~~~--~~~vK~~l~GP~Tla~~~~~~---------~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP 112 (270)
+++.++.+++.. +.|+.+.+.||||++..+.+. +.....++++.+++.+.+.++.+.++|++.||+.+|
T Consensus 114 v~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~ 193 (326)
T cd03307 114 VLEAIKILKEKYGEEVPVIGGMTGPASLASHLAGVENFLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADP 193 (326)
T ss_pred HHHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCC
Confidence 455666666543 368999999999999865431 111234566667777888899999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCchhHHHhhhcc
Q 024250 113 ALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGV 192 (270)
Q Consensus 113 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~ 192 (270)
..+..+ . .++.|.+++.+.++++++.++. ..+++|+| |+....++.+.++++|++++|... + ++..++..
T Consensus 194 ~a~~~~-i---sp~~f~e~~~p~~k~i~~~i~~-~~~ilh~c-G~~~~~l~~~~~~g~d~~~~d~~~-d---l~e~~~~~ 263 (326)
T cd03307 194 TASPEL-I---SPEFYEEFALPYHKKIVKELHG-CPTILHIC-GNTTPILEYIAQCGFDGISVDEKV-D---VKTAKEIV 263 (326)
T ss_pred Cccccc-c---CHHHHHHHHHHHHHHHHHHHhc-CCcEEEEC-CCChhHHHHHHHcCCCeecccccC-C---HHHHHHHc
Confidence 765432 2 4678899999999999988865 45789999 788889999999999999999865 2 23333321
Q ss_pred cCCCeeeceEecCC-CCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHH
Q 024250 193 KYGAGIGPGVYDIH-SPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAK 260 (270)
Q Consensus 193 ~~~~~l~~GvVd~~-~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~ 260 (270)
.++....|.+|+. .....|+|++.+.++++++. ...+++|+||+.+.++. +|+++|+++++
T Consensus 264 -g~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~---g~~Il~~Gc~i~~~tp~---env~a~v~a~~ 325 (326)
T cd03307 264 -GGRAALIGNVSPSQTLLNGTPEDVKAEARKCLED---GVDILAPGCGIAPRTPL---ANLKAMVEARK 325 (326)
T ss_pred -CCceEEEeCCChHHHhcCCCHHHHHHHHHHHHHc---cCCEecCcCCCCCCCCH---HHHHHHHHHHh
Confidence 2467899999996 56789999999999999986 34789999999999998 99999999886
No 29
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=99.83 E-value=1.4e-19 Score=165.12 Aligned_cols=205 Identities=16% Similarity=0.138 Sum_probs=156.1
Q ss_pred CCcHHHHHHHHhcc--CCCcccccchHHHHHhhhccC--------------CC-CcHHHHHHHHHHHHHHHHHHHHHcCC
Q 024250 42 AMTVFWSSLAQSMT--ARPMKGMLTGPVTILNWSFVR--------------ND-QPRHETCYQIALAIKDEVEDLEKAGI 104 (270)
Q Consensus 42 ~~~~~~~~~~~~~~--~~~vK~~l~GP~Tla~~~~~~--------------~~-~~~~~l~~~l~~~~~~~~~~l~~~G~ 104 (270)
+.+++.++.+++.. +.|+-+.+.||||+|..+... .+ ....++++.+++.+.+.++++.++|+
T Consensus 121 ~~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGa 200 (346)
T PRK00115 121 PYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGA 200 (346)
T ss_pred HHHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33455566666554 368888999999999865420 01 12234566666778888998999999
Q ss_pred CEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCC--ceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCc
Q 024250 105 NVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDT--TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDE 182 (270)
Q Consensus 105 ~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~ 182 (270)
+.||+-||+-+ .+ .++.|.+++.+.++++++.++.. ...++|+| |+....++.+.++++|++|+|... +
T Consensus 201 d~i~i~d~~~~-~l-----sp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~is~d~~~-d- 271 (346)
T PRK00115 201 QAVQIFDSWAG-AL-----SPADYREFVLPYMKRIVAELKREHPDVPVILFG-KGAGELLEAMAETGADVVGLDWTV-D- 271 (346)
T ss_pred CEEEEecCccc-cC-----CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-CCcHHHHHHHHhcCCCEEeeCCCC-C-
Confidence 99999999433 23 46778899999999998877531 23478999 677788999999999999999865 2
Q ss_pred hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHHHH
Q 024250 183 KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLL 262 (270)
Q Consensus 183 ~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~ 262 (270)
++..++.. .++....|.+|+. ....++|+|.+.++++++..+....+++|+||+.+-++. +|+++|+++++..
T Consensus 272 --l~~~k~~~-g~~~~i~Gni~p~-ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp~---eNi~a~v~a~~~y 344 (346)
T PRK00115 272 --LAEARRRV-GDKKALQGNLDPA-VLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGILPETPP---ENVKALVEAVHEL 344 (346)
T ss_pred --HHHHHHHc-CCCeEEEeCCChh-HhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCCCCcCH---HHHHHHHHHHHHh
Confidence 23333321 2458999999984 446899999999999999776677999999999999998 9999999999864
No 30
>PLN02433 uroporphyrinogen decarboxylase
Probab=99.82 E-value=3.4e-19 Score=162.57 Aligned_cols=205 Identities=14% Similarity=0.081 Sum_probs=157.1
Q ss_pred CcHHHHHHHHhcc--CCCcccccchHHHHHhhhccCC------------CC---cHHHHHHHHHHHHHHHHHHHHHcCCC
Q 024250 43 MTVFWSSLAQSMT--ARPMKGMLTGPVTILNWSFVRN------------DQ---PRHETCYQIALAIKDEVEDLEKAGIN 105 (270)
Q Consensus 43 ~~~~~~~~~~~~~--~~~vK~~l~GP~Tla~~~~~~~------------~~---~~~~l~~~l~~~~~~~~~~l~~~G~~ 105 (270)
.+++.++.+++.. +.|+-+.+.||||+|..+.... +. ...++++.+++...+.++++.++|++
T Consensus 115 ~~leai~~l~~~~~~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~~~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~ 194 (345)
T PLN02433 115 FVGEALKILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQ 194 (345)
T ss_pred HHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455566666544 3688999999999998654310 11 12345566667778888888899999
Q ss_pred EEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCC---CceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCc
Q 024250 106 VIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD---TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDE 182 (270)
Q Consensus 106 ~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~ 182 (270)
.+|+.||+-+ .+ .++.|.+++.+.++++++.+.. +..+++|+| |+. ..++.+.++++|++++|... +.
T Consensus 195 ~i~i~d~~~~-~l-----sp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c-G~~-~~~~~~~~~~~~~i~~d~~~-dl 265 (345)
T PLN02433 195 VVQIFDSWAG-HL-----SPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN-GSG-GLLERLAGTGVDVIGLDWTV-DM 265 (345)
T ss_pred EEEEecCccc-cC-----CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC-CCH-HHHHHHHhcCCCEEEcCCCC-CH
Confidence 9999999433 23 4678889999999998887742 246789999 654 78999999999999999875 32
Q ss_pred hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHHHH
Q 024250 183 KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLL 262 (270)
Q Consensus 183 ~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~ 262 (270)
+..++.. .++.+..|++|+. ....|+|++.+.++++++..+.+..+++|+||+.+-++. +|+++|+++++..
T Consensus 266 ---~e~~~~~-g~~~~l~GNi~p~-ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~---eNi~a~v~av~~~ 337 (345)
T PLN02433 266 ---ADARRRL-GSDVAVQGNVDPA-VLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTPE---ENVAHFFDVAREL 337 (345)
T ss_pred ---HHHHHHh-CCCeEEEeCCCch-hhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCH---HHHHHHHHHHHHh
Confidence 3333321 2468999999984 557999999999999999876566999999999999998 9999999999876
Q ss_pred HH
Q 024250 263 RT 264 (270)
Q Consensus 263 ~~ 264 (270)
..
T Consensus 338 ~~ 339 (345)
T PLN02433 338 RY 339 (345)
T ss_pred Ch
Confidence 54
No 31
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=99.80 E-value=9.3e-19 Score=159.31 Aligned_cols=203 Identities=15% Similarity=0.144 Sum_probs=152.3
Q ss_pred CCcHHHHHHHHhcc--CCCcccccchHHHHHhhhcc-CC-----------CC---cHHHHHHHHHHHHHHHHHHHHHcCC
Q 024250 42 AMTVFWSSLAQSMT--ARPMKGMLTGPVTILNWSFV-RN-----------DQ---PRHETCYQIALAIKDEVEDLEKAGI 104 (270)
Q Consensus 42 ~~~~~~~~~~~~~~--~~~vK~~l~GP~Tla~~~~~-~~-----------~~---~~~~l~~~l~~~~~~~~~~l~~~G~ 104 (270)
+.+++.++.+++.. +.|+-+.+.||||+|..+.. .. +. ...++++.+++...+.++++.++|+
T Consensus 115 ~~~leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGa 194 (338)
T TIGR01464 115 PYVYEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGA 194 (338)
T ss_pred HHHHHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33455666666554 36888999999999986542 10 11 1234455556677788888889999
Q ss_pred CEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCC--ceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCc
Q 024250 105 NVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDT--TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDE 182 (270)
Q Consensus 105 ~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~ 182 (270)
+.+|+-||+- ..+ .++.|.+++.+.++++++.++.. ...++|.| |+...+++.+.++++|++|+|... +
T Consensus 195 d~i~i~d~~~-~~l-----sp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~~s~d~~~-d- 265 (338)
T TIGR01464 195 QAVQIFDSWA-GAL-----SPEDFEEFVLPYLKKIIEEVKARLPNVPVILFA-KGAGHLLEELAETGADVVGLDWTV-D- 265 (338)
T ss_pred CEEEEECCcc-ccC-----CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe-CCcHHHHHHHHhcCCCEEEeCCCC-C-
Confidence 9999999943 223 46788899999999988877421 22368999 678789999999999999999865 2
Q ss_pred hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhcccc-CCceEecCCCCCCCCCHhHHHHHHHHHHHHHH
Q 024250 183 KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE-TNILWVNPDCGLKTRKYTEVKPALSNMVAAAK 260 (270)
Q Consensus 183 ~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~-~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~ 260 (270)
++..++.. .++....|.||+... ..|+|+|.+.++++++..+ ....+++|+||+.+-+|. +|+++|+++++
T Consensus 266 --l~e~~~~~-~~~~~i~Gni~p~~l-~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~~~tp~---eni~a~v~a~~ 337 (338)
T TIGR01464 266 --LKEARKRV-GPGVAIQGNLDPAVL-YAPEEALEEKVEKILEAFGGKSRYIFNLGHGILPDTPP---ENVKALVEYVH 337 (338)
T ss_pred --HHHHHHHh-CCCeeEEeCCChHHh-cCCHHHHHHHHHHHHHHhccCCCceecCCCcCCCCcCH---HHHHHHHHHHh
Confidence 23333321 245799999998555 7899999999999999763 456899999999999998 99999999875
No 32
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=99.80 E-value=1.3e-18 Score=158.16 Aligned_cols=203 Identities=14% Similarity=0.127 Sum_probs=153.1
Q ss_pred CCcHHHHHHHHhccC--CCcccccchHHHHHhhhcc--C--C-----------CCcHHHHHHHHHHHHHHHHHHHHHcCC
Q 024250 42 AMTVFWSSLAQSMTA--RPMKGMLTGPVTILNWSFV--R--N-----------DQPRHETCYQIALAIKDEVEDLEKAGI 104 (270)
Q Consensus 42 ~~~~~~~~~~~~~~~--~~vK~~l~GP~Tla~~~~~--~--~-----------~~~~~~l~~~l~~~~~~~~~~l~~~G~ 104 (270)
+..++.++.+++..+ .|+-+.+.||||++..+.. . . .....++++.+++.+.+.++++.++|+
T Consensus 112 ~~~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGa 191 (335)
T cd00717 112 SYVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEYLKAQIEAGA 191 (335)
T ss_pred HHHHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 335555666665543 6888899999999986542 1 0 012234555666777888888889999
Q ss_pred CEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCC--ceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCc
Q 024250 105 NVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDT--TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDE 182 (270)
Q Consensus 105 ~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~ 182 (270)
+.||+-||+-+ .+ .++.|.+++.+.++++++.++.. ...++|.|. +..+.++.+.+++++++|+|... +
T Consensus 192 d~i~i~d~~~~-~l-----sp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg-~~~~~~~~~~~~~~~~~s~d~~~-d- 262 (335)
T cd00717 192 QAVQIFDSWAG-AL-----SPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAK-GAGGLLEDLAQLGADVVGLDWRV-D- 262 (335)
T ss_pred CEEEEeCcccc-cC-----CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcC-CCHHHHHHHHhcCCCEEEeCCCC-C-
Confidence 99999999433 23 46788899999999998877531 223689994 55589999999999999999865 2
Q ss_pred hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccC-CceEecCCCCCCCCCHhHHHHHHHHHHHHHH
Q 024250 183 KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET-NILWVNPDCGLKTRKYTEVKPALSNMVAAAK 260 (270)
Q Consensus 183 ~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~-~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~ 260 (270)
++..++.. .++.+..|++|+. ....++|+|.+.++++++..+. ...+++|+||+.+-++. +|+++|+++++
T Consensus 263 --l~e~k~~~-g~~~~i~Gni~p~-~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~~tp~---eNi~a~v~a~~ 334 (335)
T cd00717 263 --LDEARKRL-GPKVALQGNLDPA-LLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILPDTPP---ENVKALVEAVH 334 (335)
T ss_pred --HHHHHHHh-CCCeEEEeCCChh-hhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCCCcCH---HHHHHHHHHHh
Confidence 23333321 2468999999985 4567889999999999998754 67999999999999998 99999999886
No 33
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=99.76 E-value=4.4e-18 Score=155.00 Aligned_cols=202 Identities=18% Similarity=0.233 Sum_probs=144.1
Q ss_pred cHHHHHHHHhcc--CCCcccccchHHHHHhhhc---cCC--------C-CcHHHHHHHHHHHHHHHHHHHHHcCCCEEEe
Q 024250 44 TVFWSSLAQSMT--ARPMKGMLTGPVTILNWSF---VRN--------D-QPRHETCYQIALAIKDEVEDLEKAGINVIQI 109 (270)
Q Consensus 44 ~~~~~~~~~~~~--~~~vK~~l~GP~Tla~~~~---~~~--------~-~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQi 109 (270)
.++.++.+++.. +.++-+.+.||+|++..+. +.. + ....++++.+++.+.+.++.+.++|++.|++
T Consensus 122 ~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~ 201 (343)
T PF01208_consen 122 VLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRGFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFI 201 (343)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCCHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 344445555543 4678889999999998877 421 1 1234567777888888999999999999999
Q ss_pred ccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCC-Cc-eEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCchhHHH
Q 024250 110 DEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD-TT-QIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSV 187 (270)
Q Consensus 110 DEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~~~l~~ 187 (270)
-+ ..+..+ +++.|.+++.+.++++++.++. +. .+.+|+| |+...+++.+.++++|++++|... +.. +.
T Consensus 202 ~d-~~~~~i-----sp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~c-G~~~~~~~~l~~~g~d~~~~~~~~-~~~--~~ 271 (343)
T PF01208_consen 202 FD-SSGSLI-----SPEMFEEFILPYLKKIIDAIKEAGKDPVILHIC-GNTTPILDDLADLGADVLSVDEKV-DLA--EA 271 (343)
T ss_dssp EE-TTGGGS------HHHHHHHTHHHHHHHHHHHHHHETE-EEEEET-THG-GGHHHHHTSS-SEEEE-TTS--HH--HH
T ss_pred cc-cccCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEC-CchHHHHHHHHhcCCCEEEEcCCC-CHH--HH
Confidence 88 222222 4678889999999999887753 23 6899999 899889999999999999999765 331 22
Q ss_pred hhhcccCCCeeeceEecCC-CCCCCCHHHHHHHHHHHhcc-c-cCCceEecCCCCCCCCCHhHHHHHHHHHHHHHHH
Q 024250 188 FREGVKYGAGIGPGVYDIH-SPRIPSTEEIADRINKMLAV-L-ETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKL 261 (270)
Q Consensus 188 l~~~~~~~~~l~~GvVd~~-~~~~e~~e~v~~~i~~~~~~-~-~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~ 261 (270)
.+.. .++.+..|.||+. ... .|+|+|.+.++++++. . +....+++|+|++.+.++. +++++|+++++.
T Consensus 272 ~~~~--~~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p~---eni~a~~~a~~e 342 (343)
T PF01208_consen 272 KRKL--GDKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDTPP---ENIKAMVEAVKE 342 (343)
T ss_dssp HHHH--TTSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS-H---HHHHHHHHHHHH
T ss_pred HHHh--CCCeEEECCCCcccccc-CCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCcCH---HHHHHHHHHHHh
Confidence 2232 2578999999995 445 9999999999999993 4 4688999999999999998 999999999975
No 34
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=99.68 E-value=7.2e-16 Score=142.28 Aligned_cols=200 Identities=11% Similarity=0.074 Sum_probs=149.4
Q ss_pred HHHHH-hcc-C-CCcccccchHHH-HHhhhccC---------CCCcHHHHHHHHHHHHHHHHHHHHHcCCCE-EEeccCc
Q 024250 48 SSLAQ-SMT-A-RPMKGMLTGPVT-ILNWSFVR---------NDQPRHETCYQIALAIKDEVEDLEKAGINV-IQIDEAA 113 (270)
Q Consensus 48 ~~~~~-~~~-~-~~vK~~l~GP~T-la~~~~~~---------~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~-IQiDEP~ 113 (270)
.+.++ +.. + .|+-+.++||+| +|..+.+- +.....++++.+++...+.++...++|++. |.+.+|.
T Consensus 159 ~~~l~~~~~g~~vpi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~ 238 (378)
T cd03308 159 GAKLAEKEYGTPLNAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPL 238 (378)
T ss_pred HHHHHhhccCCccccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 45554 322 2 588999999997 77655441 112345567777788888899999999994 5566665
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHhcCCCC-CceEEEeeccCCchhHHHHHHhCCCC-EEEEEccCCCchhHHHhhhc
Q 024250 114 LREGLPLRKSEHAFYLDWAVHSFRITNCGVQD-TTQIHTHMCYSNFNDIIHSIIDMDAD-VITIENSRSDEKLLSVFREG 191 (270)
Q Consensus 114 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~lH~c~g~~~~~~~~l~~~~vd-~l~ld~~~~~~~~l~~l~~~ 191 (270)
-+..+ + .++.|.+++.+.++++++.++. +..+++|+| |++..+++.+.+++++ +++++... + ++..++.
T Consensus 239 s~~~~-l---sp~~f~ef~~P~~k~i~~~i~~~g~~~ilh~c-G~~~~~l~~l~~~g~~~v~~~~~~~-d---l~~ak~~ 309 (378)
T cd03308 239 HLPPF-L---RPKQFEKFYWPSFKKVVEGLAARGQRIFLFFE-GDWERYLEYLQELPKGKTVGLFEYG-D---PKKVKEK 309 (378)
T ss_pred cccCc-c---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcC-CCcHHHHHHHHhcCCCcEEEcCCCC-C---HHHHHHH
Confidence 43322 1 4678899999999999988753 356789999 8998899999999998 66665432 3 3334433
Q ss_pred ccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhcccc-CCceEecCCCCCCCCCH--hHHHHHHHHHHHHHH
Q 024250 192 VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE-TNILWVNPDCGLKTRKY--TEVKPALSNMVAAAK 260 (270)
Q Consensus 192 ~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~-~~~l~vsp~Cgl~~~~~--~~a~~kL~~l~~~a~ 260 (270)
. .++....|+||+......|+|+|.+.++++++... ....+++|+||+.+.++ . +|+++|+++++
T Consensus 310 ~-g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~~---eNi~a~v~av~ 377 (378)
T cd03308 310 L-GDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKP---ENLIAVIEFVR 377 (378)
T ss_pred h-CCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCCh---HHHHHHHHHHh
Confidence 2 24689999999985566899999999999999875 46789999999999876 6 89999999876
No 35
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=99.68 E-value=1.5e-15 Score=137.14 Aligned_cols=207 Identities=14% Similarity=0.143 Sum_probs=155.7
Q ss_pred CCcHHHHHHHHhccC--CCcccccchHHHHHhhhcc-C---C--------C---CcHHHHHHHHHHHHHHHHHHHHHcCC
Q 024250 42 AMTVFWSSLAQSMTA--RPMKGMLTGPVTILNWSFV-R---N--------D---QPRHETCYQIALAIKDEVEDLEKAGI 104 (270)
Q Consensus 42 ~~~~~~~~~~~~~~~--~~vK~~l~GP~Tla~~~~~-~---~--------~---~~~~~l~~~l~~~~~~~~~~l~~~G~ 104 (270)
+.+++.++.+++..+ .|+.+..-||||+|..+.. . + | .....+++.+++.....++.+.++|+
T Consensus 124 ~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGA 203 (352)
T COG0407 124 PYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGA 203 (352)
T ss_pred HHHHHHHHHHHHHcCCCCCeEEecCCHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 446677777776554 6889999999999975432 1 1 1 12356777888999999999999999
Q ss_pred CEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCC--CceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCc
Q 024250 105 NVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD--TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDE 182 (270)
Q Consensus 105 ~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~ 182 (270)
+.|||.|..-. .++. ..|.+++.+...++.+.++. ....++|.| ++....++.+.++++|++|+|+...
T Consensus 204 davqifDsW~g-~l~~-----~~~~~f~~~~~~~i~~~vk~~~~~~pii~f~-~ga~~~l~~m~~~g~d~l~vdw~v~-- 274 (352)
T COG0407 204 DAVQIFDSWAG-VLSM-----IDYDEFVLPYMKRIVREVKEVKGGVPVIHFC-KGAGHLLEDMAKTGFDVLGVDWRVD-- 274 (352)
T ss_pred CEEEeeccccc-cCCc-----ccHHHHhhhHHHHHHHHHHHhCCCCcEEEEC-CCcHHHHHHHHhcCCcEEeeccccC--
Confidence 99999998633 2322 23566677776666665542 212478999 5566789999999999999999874
Q ss_pred hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccC-CceEecCCCCCCCCCHhHHHHHHHHHHHHHHH
Q 024250 183 KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET-NILWVNPDCGLKTRKYTEVKPALSNMVAAAKL 261 (270)
Q Consensus 183 ~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~-~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~ 261 (270)
++..++.. .++...-|++|+ .....+.+.+.+.++++++.... +.-+.+++||+.+.++. +|++.|+++++.
T Consensus 275 --l~~a~~~~-~~~~~lqGNldP-~lL~~~~~~i~~~~~~iL~~~~~~~~~IfnlGhGI~P~tp~---e~v~~lve~v~~ 347 (352)
T COG0407 275 --LKEAKKRL-GDKVALQGNLDP-ALLYAPPEAIKEEVKRILEDGGDGSGYIFNLGHGILPETPP---ENVKALVEAVHE 347 (352)
T ss_pred --HHHHHHHh-CCCceEEeccCh-HhhcCCHHHHHHHHHHHHHHhccCCCceecCCCCcCCCCCH---HHHHHHHHHHHH
Confidence 33333321 133689999999 77889999999999999987643 57899999999999998 999999999987
Q ss_pred HHH
Q 024250 262 LRT 264 (270)
Q Consensus 262 ~~~ 264 (270)
+..
T Consensus 348 ~~~ 350 (352)
T COG0407 348 YSR 350 (352)
T ss_pred hcc
Confidence 654
No 36
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=99.56 E-value=1.6e-13 Score=123.82 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=134.2
Q ss_pred ccccchHHHHHhhhccC---------CCCcHHHHHHHHHHHHHHHHHHHHHc-CCCEEEeccCccccCCCCCCccHHHHH
Q 024250 60 KGMLTGPVTILNWSFVR---------NDQPRHETCYQIALAIKDEVEDLEKA-GINVIQIDEAALREGLPLRKSEHAFYL 129 (270)
Q Consensus 60 K~~l~GP~Tla~~~~~~---------~~~~~~~l~~~l~~~~~~~~~~l~~~-G~~~IQiDEP~l~~~l~~~~~~~~~~~ 129 (270)
-....||+|++.++.+- +.....++++.+++...+.++...++ |+++||+-|+.-+..-+. -.++.|.
T Consensus 116 ~~~~~Gpf~~a~~l~g~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~--LSpe~f~ 193 (321)
T cd03309 116 VPLPGGVFERFRLRMSMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSF--ISPATFR 193 (321)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCc--cCHHHHH
Confidence 34678999999765431 11234567777888888888888888 999999988654421111 1467888
Q ss_pred HHHHHHHHHHhcCCCC--CceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCC
Q 024250 130 DWAVHSFRITNCGVQD--TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHS 207 (270)
Q Consensus 130 ~~~~~~~~~~~~~~~~--~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~ 207 (270)
+++.+.++++++.++. +..+++|+| |+..++++.+.++++|++++|+...+. ..+++.. .++....|++|+..
T Consensus 194 efv~P~~krIi~~ik~~~g~piilH~c-G~~~~~l~~~~e~g~dvl~~d~~~~dl---~eak~~~-g~k~~l~GNlDp~~ 268 (321)
T cd03309 194 EFILPRMQRIFDFLRSNTSALIVHHSC-GAAASLVPSMAEMGVDSWNVVMTANNT---AELRRLL-GDKVVLAGAIDDVA 268 (321)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEeC-CCcHHHHHHHHHcCCCEEEecCCCCCH---HHHHHHh-CCCeEEEcCCChHH
Confidence 9999999999887753 346789999 888789999999999999999865333 3333321 24689999999876
Q ss_pred CCCC-CHHHHHHHHHHHhccccC-CceEecCCCCCCCCCH
Q 024250 208 PRIP-STEEIADRINKMLAVLET-NILWVNPDCGLKTRKY 245 (270)
Q Consensus 208 ~~~e-~~e~v~~~i~~~~~~~~~-~~l~vsp~Cgl~~~~~ 245 (270)
...+ ++|++.+.++++++..+. ...+.+|+|++....+
T Consensus 269 L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~~~~~ 308 (321)
T cd03309 269 LDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLPFSIF 308 (321)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCCcccC
Confidence 5444 489999999999998876 8899999999986444
No 37
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=98.80 E-value=6.3e-08 Score=83.98 Aligned_cols=190 Identities=15% Similarity=0.141 Sum_probs=140.3
Q ss_pred CCcccccchHHHHHhhhc-cC-------------CC-CcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCC
Q 024250 57 RPMKGMLTGPVTILNWSF-VR-------------ND-QPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLR 121 (270)
Q Consensus 57 ~~vK~~l~GP~Tla~~~~-~~-------------~~-~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~ 121 (270)
.|+-+-+-+|||++.-.. +. .+ .....|+.-|.+++.+.+..-+.+|+..+||=|-.... +
T Consensus 145 vpl~GF~GaPwTlm~YmiEGGgSkt~~~aK~w~~~~Pe~sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSwage-L--- 220 (359)
T KOG2872|consen 145 VPLIGFVGAPWTLMTYMIEGGGSKTFTQAKRWLFQYPEVSHALLQILTDAIVEYLVYQVVAGAQALQIFESWAGE-L--- 220 (359)
T ss_pred cceeeecCCchhhheeeecCCCchhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccc-C---
Confidence 478888889999985321 10 12 23456778888899999988899999999998855443 3
Q ss_pred CccHHHHHHHHHHHHHHHhcCCCC--------CceEEEeeccCCchhHHHHHHhCCCCEEEEEccCCCchhHHHhhhccc
Q 024250 122 KSEHAFYLDWAVHSFRITNCGVQD--------TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVK 193 (270)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~ 193 (270)
.+..|.+++.+.++++.+.++. .+++++-.- |++ -.++.|.++++|.+++|++....+..+.+.
T Consensus 221 --spe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~fak-G~g-~~Le~l~~tG~DVvgLDWTvdp~ear~~~g---- 292 (359)
T KOG2872|consen 221 --SPEDFEEFSLPYLRQIAEAVKKRLPELGLAPVPMILFAK-GSG-GALEELAQTGYDVVGLDWTVDPAEARRRVG---- 292 (359)
T ss_pred --CHHHHHHhhhHHHHHHHHHHHHhhhhhcCCCCceEEEEc-Ccc-hHHHHHHhcCCcEEeecccccHHHHHHhhC----
Confidence 3456788888888887765432 235544333 555 368999999999999999874333322222
Q ss_pred CCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHHHHH
Q 024250 194 YGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 263 (270)
Q Consensus 194 ~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~~ 263 (270)
+..-.=|++|.... -.+.|++.+++.+..+..|+++-+++=+-|+-+.++. +.++..++++++++
T Consensus 293 -~~VtlQGNlDP~~l-y~s~e~it~~v~~mv~~fG~~ryI~NLGHGi~p~tp~---e~v~~f~E~~h~~~ 357 (359)
T KOG2872|consen 293 -NRVTLQGNLDPGVL-YGSKEEITQLVKQMVKDFGKSRYIANLGHGITPGTPP---EHVAHFVEAVHKIG 357 (359)
T ss_pred -CceEEecCCChHHh-cCCHHHHHHHHHHHHHHhCccceEEecCCCCCCCCCH---HHHHHHHHHHHHhc
Confidence 23556688888554 4799999999999999999999999999999999888 78888888887653
No 38
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=94.99 E-value=2.3 Score=37.29 Aligned_cols=155 Identities=15% Similarity=0.236 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
...+.++++.+.|+++|=|--.+-..+. ..-+.++..++..+.++.+.+.. +.++.+|++ +. ..++..++.++
T Consensus 24 ~~~~~a~~~~~~GA~iIDIG~~st~p~~--~~i~~~~E~~rl~~~v~~~~~~~--~~plsiDT~--~~-~vi~~al~~G~ 96 (257)
T TIGR01496 24 KAVAHAERMLEEGADIIDVGGESTRPGA--DRVSPEEELNRVVPVIKALRDQP--DVPISVDTY--RA-EVARAALEAGA 96 (257)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHHHHhcC--CCeEEEeCC--CH-HHHHHHHHcCC
Confidence 3445566777899999888421111111 11133444555666666654332 256888888 33 35666677787
Q ss_pred CEEE-EEccCCCchhHHHhhhcccCCCeeeceEecCCCC-CC------CC-HHHHH----HHHHHHhcc-ccCCceEecC
Q 024250 171 DVIT-IENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSP-RI------PS-TEEIA----DRINKMLAV-LETNILWVNP 236 (270)
Q Consensus 171 d~l~-ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~-~~------e~-~e~v~----~~i~~~~~~-~~~~~l~vsp 236 (270)
+.|. +.... +.+.+..++++ +-.+++--.++ .+ .. ++ .+++. ++++.+.+. ++.+++++.|
T Consensus 97 ~iINsis~~~-~~~~~~l~~~~---~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDP 171 (257)
T TIGR01496 97 DIINDVSGGQ-DPAMLEVAAEY---GVPLVLMHMRG-TPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDP 171 (257)
T ss_pred CEEEECCCCC-CchhHHHHHHc---CCcEEEEeCCC-CCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEEC
Confidence 7653 22111 33455666654 33333311111 11 10 11 33333 333333332 3458999999
Q ss_pred CCCCCCCCHhHHHHHHHHHHHH
Q 024250 237 DCGLKTRKYTEVKPALSNMVAA 258 (270)
Q Consensus 237 ~Cgl~~~~~~~a~~kL~~l~~~ 258 (270)
..||.. +.+..++-|+++.+.
T Consensus 172 g~gf~k-s~~~~~~~l~~i~~l 192 (257)
T TIGR01496 172 GIGFGK-TPEHNLELLKHLEEF 192 (257)
T ss_pred CCCccc-CHHHHHHHHHHHHHH
Confidence 888876 566666666666544
No 39
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=94.98 E-value=0.72 Score=39.74 Aligned_cols=145 Identities=11% Similarity=0.167 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
-+.++++++.++|++++.+|=..-......+ +....++.++ + ..++-+|..--|....++.+.++++
T Consensus 26 ~l~~el~~l~~~g~d~lHiDVMDG~FVPNit------fGp~~i~~i~---~----~~~~DvHLMv~~P~~~i~~~~~aGa 92 (228)
T PRK08091 26 KFNETLTTLSENQLRLLHFDIADGQFSPFFT------VGAIAIKQFP---T----HCFKDVHLMVRDQFEVAKACVAAGA 92 (228)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccc------cCHHHHHHhC---C----CCCEEEEeccCCHHHHHHHHHHhCC
Confidence 5667789999999999999943211111111 1111223332 1 2346678776677778899999999
Q ss_pred CEEEEEccCC-C-chhHHHhhhcccCCCeeeceEe-cCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhH
Q 024250 171 DVITIENSRS-D-EKLLSVFREGVKYGAGIGPGVY-DIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTE 247 (270)
Q Consensus 171 d~l~ld~~~~-~-~~~l~~l~~~~~~~~~l~~GvV-d~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~ 247 (270)
|.+++=+... + .+.++.+++. |..+-.|+. ++.+ +++.+..-+. .++.+ =-+-|.|+.|=..+-+ .
T Consensus 93 d~It~H~Ea~~~~~~~l~~Ik~~---g~~~kaGlalnP~T----p~~~i~~~l~-~vD~V--LiMtV~PGfgGQ~f~~-~ 161 (228)
T PRK08091 93 DIVTLQVEQTHDLALTIEWLAKQ---KTTVLIGLCLCPET----PISLLEPYLD-QIDLI--QILTLDPRTGTKAPSD-L 161 (228)
T ss_pred CEEEEcccCcccHHHHHHHHHHC---CCCceEEEEECCCC----CHHHHHHHHh-hcCEE--EEEEECCCCCCccccH-H
Confidence 9988776532 2 2455666653 443466763 3332 2233322222 22322 1234677655333333 3
Q ss_pred HHHHHHHHHHHH
Q 024250 248 VKPALSNMVAAA 259 (270)
Q Consensus 248 a~~kL~~l~~~a 259 (270)
+.+|++.+.+..
T Consensus 162 ~l~KI~~lr~~~ 173 (228)
T PRK08091 162 ILDRVIQVENRL 173 (228)
T ss_pred HHHHHHHHHHHH
Confidence 567777766543
No 40
>PLN02334 ribulose-phosphate 3-epimerase
Probab=94.88 E-value=1.1 Score=38.51 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD 171 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd 171 (270)
+.++++++.+.|+++||+|+......-... +.......+++..+ ..+.+|.---|.++.++.+.++++|
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d~~f~~~~~------~g~~~~~~l~~~~~-----~~~~vhlmv~~p~d~~~~~~~~gad 90 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMDGHFVPNLT------IGPPVVKALRKHTD-----APLDCHLMVTNPEDYVPDFAKAGAS 90 (229)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCcCCccc------cCHHHHHHHHhcCC-----CcEEEEeccCCHHHHHHHHHHcCCC
Confidence 556788888999999999987664321110 11122334444322 2346676544566778889999999
Q ss_pred EE--EEE
Q 024250 172 VI--TIE 176 (270)
Q Consensus 172 ~l--~ld 176 (270)
++ |++
T Consensus 91 ~v~vH~~ 97 (229)
T PLN02334 91 IFTFHIE 97 (229)
T ss_pred EEEEeec
Confidence 99 777
No 41
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=94.84 E-value=0.45 Score=40.20 Aligned_cols=145 Identities=18% Similarity=0.277 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
-+.++++++.++|++++.+|=..-....... +-...++.+++.. ..++-+|..--|....++.+.++++
T Consensus 13 ~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~------~g~~~i~~i~~~~-----~~~~DvHLMv~~P~~~i~~~~~~g~ 81 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWLHIDIMDGHFVPNLT------FGPDIIKAIRKIT-----DLPLDVHLMVENPERYIEEFAEAGA 81 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-------B-HHHHHHHHTTS-----SSEEEEEEESSSGGGHHHHHHHHT-
T ss_pred HHHHHHHHHHHcCCCEEEEeecccccCCccc------CCHHHHHHHhhcC-----CCcEEEEeeeccHHHHHHHHHhcCC
Confidence 4567789999999999999943222111111 1122334444431 2466778776677788999999999
Q ss_pred CEEEEEccCC-C-chhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCc-eEecCCCCCCCCC-Hh
Q 024250 171 DVITIENSRS-D-EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNI-LWVNPDCGLKTRK-YT 246 (270)
Q Consensus 171 d~l~ld~~~~-~-~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~-l~vsp~Cgl~~~~-~~ 246 (270)
|.+++-+... + .+.++.+++. |...++.+ ++.+ .++. ++..++.+ +. ++.|-.=|+++.+ ..
T Consensus 82 ~~i~~H~E~~~~~~~~i~~ik~~---g~k~Gial-nP~T-~~~~-------~~~~l~~v--D~VlvMsV~PG~~Gq~f~~ 147 (201)
T PF00834_consen 82 DYITFHAEATEDPKETIKYIKEA---GIKAGIAL-NPET-PVEE-------LEPYLDQV--DMVLVMSVEPGFGGQKFIP 147 (201)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHHT---TSEEEEEE--TTS--GGG-------GTTTGCCS--SEEEEESS-TTTSSB--HG
T ss_pred CEEEEcccchhCHHHHHHHHHHh---CCCEEEEE-ECCC-CchH-------HHHHhhhc--CEEEEEEecCCCCcccccH
Confidence 9999887542 2 3455666653 55555554 3322 1122 23334433 33 3333344555543 23
Q ss_pred HHHHHHHHHHHHHH
Q 024250 247 EVKPALSNMVAAAK 260 (270)
Q Consensus 247 ~a~~kL~~l~~~a~ 260 (270)
...+|++.+.+...
T Consensus 148 ~~~~KI~~l~~~~~ 161 (201)
T PF00834_consen 148 EVLEKIRELRKLIP 161 (201)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777665543
No 42
>PRK08005 epimerase; Validated
Probab=94.67 E-value=0.85 Score=38.79 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
.+.++++++.++|++++.+|=..-......+ +....++.+++..+ .++-+|..--+....++.+.++++
T Consensus 14 ~l~~el~~l~~~g~d~lHiDvMDG~FVPN~t------fG~~~i~~l~~~t~-----~~~DvHLMv~~P~~~i~~~~~~ga 82 (210)
T PRK08005 14 RYAEALTALHDAPLGSLHLDIEDTSFINNIT------FGMKTIQAVAQQTR-----HPLSFHLMVSSPQRWLPWLAAIRP 82 (210)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccc------cCHHHHHHHHhcCC-----CCeEEEeccCCHHHHHHHHHHhCC
Confidence 5677899999999999999942211111111 11223445554322 345678776677778899999999
Q ss_pred CEEEEEccCC-C-chhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHH
Q 024250 171 DVITIENSRS-D-EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEV 248 (270)
Q Consensus 171 d~l~ld~~~~-~-~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a 248 (270)
|.+++-+... + .+.++.+++. |...++-+ +.. .+++.+. .+...++.+ =-+.|.|+.|=+.+-+ .+
T Consensus 83 d~It~H~Ea~~~~~~~l~~Ik~~---G~k~GlAl-nP~----Tp~~~i~-~~l~~vD~V--lvMsV~PGf~GQ~f~~-~~ 150 (210)
T PRK08005 83 GWIFIHAESVQNPSEILADIRAI---GAKAGLAL-NPA----TPLLPYR-YLALQLDAL--MIMTSEPDGRGQQFIA-AM 150 (210)
T ss_pred CEEEEcccCccCHHHHHHHHHHc---CCcEEEEE-CCC----CCHHHHH-HHHHhcCEE--EEEEecCCCccceecH-HH
Confidence 9988877532 2 2456666653 44443332 332 2233332 222223332 1234566655444333 35
Q ss_pred HHHHHHHHHH
Q 024250 249 KPALSNMVAA 258 (270)
Q Consensus 249 ~~kL~~l~~~ 258 (270)
.+|++.+.+.
T Consensus 151 ~~KI~~l~~~ 160 (210)
T PRK08005 151 CEKVSQSREH 160 (210)
T ss_pred HHHHHHHHHh
Confidence 6777766543
No 43
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=94.02 E-value=3.5 Score=36.83 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=107.7
Q ss_pred ccccchHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHH
Q 024250 60 KGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRIT 139 (270)
Q Consensus 60 K~~l~GP~Tla~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (270)
.+.-.||.+=....... + .--++++.++|++.++.|.+-|++.+-|.- .. +. .....++.+.+++
T Consensus 117 VaGsiGPt~k~~~~~~~-~---~v~fd~l~~ay~eq~~~Li~gG~D~iLiET-~~---------D~-l~~KaA~~a~~~~ 181 (311)
T COG0646 117 VAGSIGPTNKTLSISPD-F---AVTFDELVEAYREQVEGLIDGGADLILIET-IF---------DT-LNAKAAVFAAREV 181 (311)
T ss_pred EEEeccCcCCcCCcCCc-c---cccHHHHHHHHHHHHHHHHhCCCcEEEEeh-hc---------cH-HHHHHHHHHHHHH
Confidence 34457887732222111 0 112578889999999999999999766652 11 11 1245566677777
Q ss_pred hcCCCCCceEEEeeccCC---------chhHHHHHHhCCCCEEEEEccCCCchh---HHHhhhcccCCCeee----ceEe
Q 024250 140 NCGVQDTTQIHTHMCYSN---------FNDIIHSIIDMDADVITIENSRSDEKL---LSVFREGVKYGAGIG----PGVY 203 (270)
Q Consensus 140 ~~~~~~~~~i~lH~c~g~---------~~~~~~~l~~~~vd~l~ld~~~~~~~~---l~~l~~~~~~~~~l~----~GvV 203 (270)
.+......++++|.-..+ ....+..+..++++.+++--..+..+. ++.+.+. .+..|+ .|+-
T Consensus 182 ~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~--~~~~vs~~PNAGLP 259 (311)
T COG0646 182 FEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELSRI--ADAFVSVYPNAGLP 259 (311)
T ss_pred HHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhccCCcEEeeccccCHHHHHHHHHHHHhc--cCceEEEeCCCCCC
Confidence 765544466777765432 236778889999999999977643222 3333332 233332 3554
Q ss_pred cCCCC---CCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHHHHHHHHHHHHH
Q 024250 204 DIHSP---RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAA 259 (270)
Q Consensus 204 d~~~~---~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a 259 (270)
+..+. ..++|+...+.++...+.-+ --+|.--||-.+ +-+++|+++.
T Consensus 260 ~~~g~~~~Y~~~p~~~a~~~~~f~~~g~--vnIvGGCCGTTP-------eHIraia~~v 309 (311)
T COG0646 260 NAFGERAVYDLTPEYMAEALAEFAEEGG--VNIVGGCCGTTP-------EHIRAIAEAV 309 (311)
T ss_pred cccCCccccCCCHHHHHHHHHHHHHhCC--ceeeccccCCCH-------HHHHHHHHHh
Confidence 54444 67999999999998776421 346888898764 4466666554
No 44
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=93.89 E-value=2.1 Score=36.73 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
-+.++++++.++|++++.+|=..-......+ +....+..+++.... .++-+|.---|....++.+.++++
T Consensus 17 ~l~~~i~~l~~~g~d~lHiDimDG~FVPN~t------fg~~~i~~lr~~~~~----~~~dvHLMv~~P~~~i~~~~~~ga 86 (223)
T PRK08745 17 RLGEEVDNVLKAGADWVHFDVMDNHYVPNLT------IGPMVCQALRKHGIT----APIDVHLMVEPVDRIVPDFADAGA 86 (223)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcc------cCHHHHHHHHhhCCC----CCEEEEeccCCHHHHHHHHHHhCC
Confidence 5677889999999999999943221111111 112234455543111 345677765677778899999999
Q ss_pred CEEEEEccCC-C-chhHHHhhhcccCCCeeeceEe-cCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhH
Q 024250 171 DVITIENSRS-D-EKLLSVFREGVKYGAGIGPGVY-DIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTE 247 (270)
Q Consensus 171 d~l~ld~~~~-~-~~~l~~l~~~~~~~~~l~~GvV-d~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~ 247 (270)
|.+++=+... + .+.+..+++. |. -.|+. +..+ +++.+ ..+...++.+ =-+-|.|+.|=+.+-+ .
T Consensus 87 d~I~~H~Ea~~~~~~~l~~Ir~~---g~--k~GlalnP~T----~~~~i-~~~l~~vD~V--lvMtV~PGf~GQ~fi~-~ 153 (223)
T PRK08745 87 TTISFHPEASRHVHRTIQLIKSH---GC--QAGLVLNPAT----PVDIL-DWVLPELDLV--LVMSVNPGFGGQAFIP-S 153 (223)
T ss_pred CEEEEcccCcccHHHHHHHHHHC---CC--ceeEEeCCCC----CHHHH-HHHHhhcCEE--EEEEECCCCCCccccH-H
Confidence 9988776532 2 2455666653 33 44542 3322 22222 2222222322 1234666555444433 3
Q ss_pred HHHHHHHHHHH
Q 024250 248 VKPALSNMVAA 258 (270)
Q Consensus 248 a~~kL~~l~~~ 258 (270)
..+|++.+.+.
T Consensus 154 ~l~KI~~l~~~ 164 (223)
T PRK08745 154 ALDKLRAIRKK 164 (223)
T ss_pred HHHHHHHHHHH
Confidence 45666666554
No 45
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=93.54 E-value=4.8 Score=35.29 Aligned_cols=152 Identities=16% Similarity=0.258 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 93 KDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
.+.+.++.+.|+++|=|--.+-..+. ..-++++..+...++++.+.+..+ .++.+-++ +. +.++..++.+++.
T Consensus 27 ~~~a~~~~~~GAdiIDIG~~st~p~~--~~i~~~~E~~rl~~~v~~i~~~~~--~plSIDT~--~~-~v~e~al~~G~~i 99 (257)
T cd00739 27 VAHAEKMIAEGADIIDIGGESTRPGA--DPVSVEEELERVIPVLEALRGELD--VLISVDTF--RA-EVARAALEAGADI 99 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCC--CCCCHHHHHHHHHHHHHHHHhcCC--CcEEEeCC--CH-HHHHHHHHhCCCE
Confidence 33466667889999877521111011 111345556677777776654332 44666665 23 4667777778776
Q ss_pred EE-EEccCCCchhHHHhhhcccCCCeeeceEecCC-CCCC-------C-CHHH----HHHHHHHHhcc-ccCCceEecCC
Q 024250 173 IT-IENSRSDEKLLSVFREGVKYGAGIGPGVYDIH-SPRI-------P-STEE----IADRINKMLAV-LETNILWVNPD 237 (270)
Q Consensus 173 l~-ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~-~~~~-------e-~~e~----v~~~i~~~~~~-~~~~~l~vsp~ 237 (270)
|. +.....+.+.+..++++ +-.+++ .+.. .+.. + ..++ ..++++.+.+. ++.+++++.|.
T Consensus 100 INdisg~~~~~~~~~l~~~~---~~~vV~--m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg 174 (257)
T cd00739 100 INDVSGGSDDPAMLEVAAEY---GAPLVL--MHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPG 174 (257)
T ss_pred EEeCCCCCCChHHHHHHHHc---CCCEEE--ECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecC
Confidence 55 33322223445555554 333333 2221 1110 1 1233 34444444432 23579999998
Q ss_pred CCCCCCCHhHHHHHHHHHHH
Q 024250 238 CGLKTRKYTEVKPALSNMVA 257 (270)
Q Consensus 238 Cgl~~~~~~~a~~kL~~l~~ 257 (270)
.||... .++..+.|+++..
T Consensus 175 ~gf~ks-~~~~~~~l~~i~~ 193 (257)
T cd00739 175 IGFGKT-PEHNLELLRRLDE 193 (257)
T ss_pred CCcccC-HHHHHHHHHHHHH
Confidence 887544 5544454554443
No 46
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=92.97 E-value=2.5 Score=36.14 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
.+.++++++.++|++|+-+|=..-......+ +...+++++++..+ .++-+|.=--+....++.+.++++
T Consensus 17 ~l~~el~~~~~agad~iH~DVMDghFVPNiT------fGp~~v~~l~~~t~-----~p~DvHLMV~~p~~~i~~fa~aga 85 (220)
T COG0036 17 RLGEELKALEAAGADLIHIDVMDGHFVPNIT------FGPPVVKALRKITD-----LPLDVHLMVENPDRYIEAFAKAGA 85 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCcCCCcc------cCHHHHHHHhhcCC-----CceEEEEecCCHHHHHHHHHHhCC
Confidence 5667789999999999999954322221111 12334556665322 345566554577778999999999
Q ss_pred CEEEEEccCC-C-chhHHHhhhcccCCCeeeceEe-cCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhH
Q 024250 171 DVITIENSRS-D-EKLLSVFREGVKYGAGIGPGVY-DIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTE 247 (270)
Q Consensus 171 d~l~ld~~~~-~-~~~l~~l~~~~~~~~~l~~GvV-d~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~ 247 (270)
|.|++=+... + .+.+..+++. | +-.|++ ++ +||-+..+.+..-++.+ =-+-|.|+-|=..+.+ .
T Consensus 86 d~It~H~E~~~~~~r~i~~Ik~~---G--~kaGv~lnP-----~Tp~~~i~~~l~~vD~V--llMsVnPGfgGQ~Fi~-~ 152 (220)
T COG0036 86 DIITFHAEATEHIHRTIQLIKEL---G--VKAGLVLNP-----ATPLEALEPVLDDVDLV--LLMSVNPGFGGQKFIP-E 152 (220)
T ss_pred CEEEEEeccCcCHHHHHHHHHHc---C--CeEEEEECC-----CCCHHHHHHHHhhCCEE--EEEeECCCCcccccCH-H
Confidence 9988776532 2 2345555543 3 445553 33 34444444444434432 0122455444333444 2
Q ss_pred HHHHHHHHHHHH
Q 024250 248 VKPALSNMVAAA 259 (270)
Q Consensus 248 a~~kL~~l~~~a 259 (270)
..+|++.+.+..
T Consensus 153 ~l~Ki~~lr~~~ 164 (220)
T COG0036 153 VLEKIRELRAMI 164 (220)
T ss_pred HHHHHHHHHHHh
Confidence 456666665543
No 47
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=92.89 E-value=1.8 Score=35.57 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 93 KDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
.+.++++.+.|+++||+-+|.++. .++.+.+.... .++... ..++++|- ++ +...+.++|+
T Consensus 15 ~~~l~~~~~~gv~~v~lR~k~~~~---------~~~~~~a~~l~-~~~~~~--~~~liin~---~~----~la~~~~~dG 75 (180)
T PF02581_consen 15 LEQLEAALAAGVDLVQLREKDLSD---------EELLELARRLA-ELCQKY--GVPLIIND---RV----DLALELGADG 75 (180)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSS-H---------HHHHHHHHHHH-HHHHHT--TGCEEEES----H----HHHHHCT-SE
T ss_pred HHHHHHHHHCCCcEEEEcCCCCCc---------cHHHHHHHHHH-HHhhcc--eEEEEecC---CH----HHHHhcCCCE
Confidence 344556667899999999996652 23344443333 333222 24567773 33 5678899999
Q ss_pred EEEEccCC
Q 024250 173 ITIENSRS 180 (270)
Q Consensus 173 l~ld~~~~ 180 (270)
+|+.....
T Consensus 76 vHl~~~~~ 83 (180)
T PF02581_consen 76 VHLGQSDL 83 (180)
T ss_dssp EEEBTTSS
T ss_pred EEeccccc
Confidence 99997553
No 48
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=91.78 E-value=4.6 Score=34.53 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
-+.+++++|.++|++++.+|=..=......+ +....++.+++.... .++-+|.---|....++.+.++++
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~t------fg~~~i~~i~~~~~~----~~~dvHLMv~~p~~~i~~~~~~ga 82 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLT------FGAPICKALRDYGIT----APIDVHLMVKPVDRIIPDFAKAGA 82 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccc------cCHHHHHHHHHhCCC----CCEEEEeccCCHHHHHHHHHHhCC
Confidence 5667899999999999999942211111111 112234455543111 345678776677778899999999
Q ss_pred CEEEEEccCC-C-chhHHHhhhc
Q 024250 171 DVITIENSRS-D-EKLLSVFREG 191 (270)
Q Consensus 171 d~l~ld~~~~-~-~~~l~~l~~~ 191 (270)
|.+++=+... + .+.+..+++.
T Consensus 83 d~i~~H~Ea~~~~~~~l~~ik~~ 105 (220)
T PRK08883 83 SMITFHVEASEHVDRTLQLIKEH 105 (220)
T ss_pred CEEEEcccCcccHHHHHHHHHHc
Confidence 9988776432 2 2455666653
No 49
>PRK13753 dihydropteroate synthase; Provisional
Probab=91.68 E-value=9.2 Score=33.99 Aligned_cols=153 Identities=12% Similarity=0.109 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD 171 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd 171 (270)
..+.++++.+.|+++|=|=-.+-..+. .+-++++..+++.+.++.+.+. ...+.+-|+. ..+....++.++|
T Consensus 27 a~~~a~~m~~~GAdIIDIGgeSTrPga--~~vs~eeE~~Rv~pvI~~l~~~---~~~ISIDT~~---~~va~~al~aGad 98 (279)
T PRK13753 27 AVTAAIEMLRVGSDVVDVGPAASHPDA--RPVSPADEIRRIAPLLDALSDQ---MHRVSIDSFQ---PETQRYALKRGVG 98 (279)
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCCCC--CcCCHHHHHHHHHHHHHHHHhC---CCcEEEECCC---HHHHHHHHHcCCC
Confidence 334466677889999866543322111 1113456677777888877542 2456776663 2467778889998
Q ss_pred EEEEEccC-CCchhHHHhhhcccCCCeeeceEec------CCCC--CCCC-HHHH----HHHHHHHhcc-ccCCceEecC
Q 024250 172 VITIENSR-SDEKLLSVFREGVKYGAGIGPGVYD------IHSP--RIPS-TEEI----ADRINKMLAV-LETNILWVNP 236 (270)
Q Consensus 172 ~l~ld~~~-~~~~~l~~l~~~~~~~~~l~~GvVd------~~~~--~~e~-~e~v----~~~i~~~~~~-~~~~~l~vsp 236 (270)
.+ .|... ++.+..+.+++. +..+++=-.. +... .-++ .+++ .+++..+.+. ++.+++++.|
T Consensus 99 iI-NDVsg~~d~~~~~vva~~---~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDP 174 (279)
T PRK13753 99 YL-NDIQGFPDPALYPDIAEA---DCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDP 174 (279)
T ss_pred EE-EeCCCCCchHHHHHHHHc---CCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeC
Confidence 54 34432 233344445442 2222221111 1010 0111 2233 3344444432 3458999999
Q ss_pred CCCCC-CCCHhHHHHHHHHHH
Q 024250 237 DCGLK-TRKYTEVKPALSNMV 256 (270)
Q Consensus 237 ~Cgl~-~~~~~~a~~kL~~l~ 256 (270)
+=||+ +-+.++-++-|+.+-
T Consensus 175 GiGF~k~k~~~~n~~ll~~l~ 195 (279)
T PRK13753 175 GMGFFLSPAPETSLHVLSNLQ 195 (279)
T ss_pred CCCCCCCCChHHHHHHHHhHH
Confidence 99996 456664444444443
No 50
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=91.65 E-value=8.6 Score=33.58 Aligned_cols=154 Identities=15% Similarity=0.183 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
.+.+.+.++.+.|+++|=|---+-..+ ..+-+.++..+...++++.+.+..+ .++.+-++ +. ++++.-++.++
T Consensus 25 ~~~~~a~~~~~~GAdiIDvG~~st~p~--~~~~~~~~E~~rl~~~v~~l~~~~~--~piSIDT~--~~-~v~~aaL~~g~ 97 (258)
T cd00423 25 KALEHARRMVEEGADIIDIGGESTRPG--AEPVSVEEELERVIPVLRALAGEPD--VPISVDTF--NA-EVAEAALKAGA 97 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCC--CCcCCHHHHHHHHHHHHHHHHhcCC--CeEEEeCC--cH-HHHHHHHHhCC
Confidence 444556777889999987763221111 1111234556667777777654332 34444433 33 46677777776
Q ss_pred CEEEEEccC-C-CchhHHHhhhcccCCCeeeceEecCCCC-------CCCCH----HHHHHHHHHHhcc-ccCCceEecC
Q 024250 171 DVITIENSR-S-DEKLLSVFREGVKYGAGIGPGVYDIHSP-------RIPST----EEIADRINKMLAV-LETNILWVNP 236 (270)
Q Consensus 171 d~l~ld~~~-~-~~~~l~~l~~~~~~~~~l~~GvVd~~~~-------~~e~~----e~v~~~i~~~~~~-~~~~~l~vsp 236 (270)
+.|. |... . +.+.++..+++ +..+++--.+.... +-.+. +.+.++++++.+. ++.+++++.|
T Consensus 98 ~iIN-dis~~~~~~~~~~l~~~~---~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDP 173 (258)
T cd00423 98 DIIN-DVSGGRGDPEMAPLAAEY---GAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDP 173 (258)
T ss_pred CEEE-eCCCCCCChHHHHHHHHc---CCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeC
Confidence 5443 2221 1 23345555553 33333333333211 12233 3444444445432 2368999999
Q ss_pred CCCCCCCCHhHHHHHHHHHH
Q 024250 237 DCGLKTRKYTEVKPALSNMV 256 (270)
Q Consensus 237 ~Cgl~~~~~~~a~~kL~~l~ 256 (270)
+-|+.. +.......|+.+.
T Consensus 174 g~g~~k-~~~~~~~~l~~i~ 192 (258)
T cd00423 174 GIGFGK-TEEHNLELLRRLD 192 (258)
T ss_pred CCCccC-CHHHHHHHHHHHH
Confidence 999876 5553334444433
No 51
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=91.62 E-value=4.3 Score=35.02 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
-+.++++.+.+ |++++.+|=..-......+ +....++.+++..+ .++-+|..--|....++.+.++++
T Consensus 16 ~l~~el~~l~~-g~d~lH~DiMDG~FVPN~t------fg~~~i~~ir~~t~-----~~~DvHLMv~~P~~~i~~~~~aGa 83 (229)
T PRK09722 16 KFKEQIEFLNS-KADYFHIDIMDGHFVPNLT------LSPFFVSQVKKLAS-----KPLDVHLMVTDPQDYIDQLADAGA 83 (229)
T ss_pred HHHHHHHHHHh-CCCEEEEecccCccCCCcc------cCHHHHHHHHhcCC-----CCeEEEEEecCHHHHHHHHHHcCC
Confidence 45667788877 9999999943211111111 11223445554322 345677766677678899999999
Q ss_pred CEEEEEccCC--C-chhHHHhhhcccCCCeeeceEe-cCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHh
Q 024250 171 DVITIENSRS--D-EKLLSVFREGVKYGAGIGPGVY-DIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYT 246 (270)
Q Consensus 171 d~l~ld~~~~--~-~~~l~~l~~~~~~~~~l~~GvV-d~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~ 246 (270)
|.+++=+... + ...++.+++. |.+ .|+. +..+ +++.+..-+ ..++.+ =-+.|.|+.|=+.+-+
T Consensus 84 d~it~H~Ea~~~~~~~~i~~Ik~~---G~k--aGlalnP~T----~~~~l~~~l-~~vD~V--LvMsV~PGf~GQ~fi~- 150 (229)
T PRK09722 84 DFITLHPETINGQAFRLIDEIRRA---GMK--VGLVLNPET----PVESIKYYI-HLLDKI--TVMTVDPGFAGQPFIP- 150 (229)
T ss_pred CEEEECccCCcchHHHHHHHHHHc---CCC--EEEEeCCCC----CHHHHHHHH-HhcCEE--EEEEEcCCCcchhccH-
Confidence 9877766432 2 2345666653 443 4442 3322 223332222 222332 1234666444333333
Q ss_pred HHHHHHHHHHHHH
Q 024250 247 EVKPALSNMVAAA 259 (270)
Q Consensus 247 ~a~~kL~~l~~~a 259 (270)
.+.+|++.+.+..
T Consensus 151 ~~l~KI~~lr~~~ 163 (229)
T PRK09722 151 EMLDKIAELKALR 163 (229)
T ss_pred HHHHHHHHHHHHH
Confidence 4567777666543
No 52
>PRK14057 epimerase; Provisional
Probab=90.82 E-value=6.8 Score=34.33 Aligned_cols=143 Identities=16% Similarity=0.234 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCCEEEeccCc--cccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAA--LREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDM 168 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~ 168 (270)
-+.+++++|.++|++++.+|=.. ++..+.. .+ ..++.++. . .++-+|.---+....++.+.++
T Consensus 33 ~L~~el~~l~~~g~d~lHiDVMDG~FVPNitf---Gp-----~~i~~i~~---~----~p~DvHLMV~~P~~~i~~~~~a 97 (254)
T PRK14057 33 ALHRYLQQLEALNQPLLHLDLMDGQFCPQFTV---GP-----WAVGQLPQ---T----FIKDVHLMVADQWTAAQACVKA 97 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCccCCcccc---CH-----HHHHHhcc---C----CCeeEEeeeCCHHHHHHHHHHh
Confidence 56778999999999999999432 1111111 11 22333322 1 3356676656776788999999
Q ss_pred CCCEEEEEccC-CC-chhHHHhhhcccCCC-------eeeceEe-cCCCCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 169 DADVITIENSR-SD-EKLLSVFREGVKYGA-------GIGPGVY-DIHSPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 169 ~vd~l~ld~~~-~~-~~~l~~l~~~~~~~~-------~l~~GvV-d~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
++|.+++=+.. .+ ...+..+++. |. .+-.|+. +..+ +++.+..-+. .++.+ =-+-|.|+.
T Consensus 98 Gad~It~H~Ea~~~~~~~l~~Ir~~---G~k~~~~~~~~kaGlAlnP~T----p~e~i~~~l~-~vD~V--LvMtV~PGf 167 (254)
T PRK14057 98 GAHCITLQAEGDIHLHHTLSWLGQQ---TVPVIGGEMPVIRGISLCPAT----PLDVIIPILS-DVEVI--QLLAVNPGY 167 (254)
T ss_pred CCCEEEEeeccccCHHHHHHHHHHc---CCCcccccccceeEEEECCCC----CHHHHHHHHH-hCCEE--EEEEECCCC
Confidence 99998877643 22 2445666653 22 2456773 3322 2333322222 23322 123355655
Q ss_pred CCCCCCHhHHHHHHHHHHHHH
Q 024250 239 GLKTRKYTEVKPALSNMVAAA 259 (270)
Q Consensus 239 gl~~~~~~~a~~kL~~l~~~a 259 (270)
|=..+-+ .+.+|++.+.+..
T Consensus 168 gGQ~Fi~-~~l~KI~~lr~~~ 187 (254)
T PRK14057 168 GSKMRSS-DLHERVAQLLCLL 187 (254)
T ss_pred CchhccH-HHHHHHHHHHHHH
Confidence 5333333 3456776665543
No 53
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=89.60 E-value=1.6 Score=35.83 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++++..++|+++||+|.++.. .+..+++.++..-. .+.+-.+ |+.+ +.++.+.++++|.|
T Consensus 92 e~~ea~~~g~d~I~lD~~~~~------------~~~~~v~~l~~~~~------~v~ie~S-GGI~~~ni~~ya~~gvD~i 152 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNMSPE------------DLKEAVEELRELNP------RVKIEAS-GGITLENIAEYAKTGVDVI 152 (169)
T ss_dssp HHHHHHHTT-SEEEEES-CHH------------HHHHHHHHHHHHTT------TSEEEEE-SSSSTTTHHHHHHTT-SEE
T ss_pred HHHHHHHhCCCEEEecCcCHH------------HHHHHHHHHhhcCC------cEEEEEE-CCCCHHHHHHHHhcCCCEE
Confidence 455666789999999986332 13344444443321 2345556 5453 57788999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
++=.
T Consensus 153 svg~ 156 (169)
T PF01729_consen 153 SVGS 156 (169)
T ss_dssp EECH
T ss_pred EcCh
Confidence 9854
No 54
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=89.51 E-value=4.4 Score=34.37 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=40.7
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT 174 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ 174 (270)
.++++.+.|+.+||+-++.++. +++.+.+.+.. .+.+.. +.+++|| + .++...++++|++|
T Consensus 24 ~l~~~l~~G~~~vqLR~k~~~~---------~~~~~la~~l~-~~~~~~--~~~liIn---d----~~~lA~~~~adGVH 84 (211)
T PRK03512 24 WIERLLDAGVRTLQLRIKDRRD---------EEVEADVVAAI-ALGRRY--QARLFIN---D----YWRLAIKHQAYGVH 84 (211)
T ss_pred HHHHHHhCCCCEEEEcCCCCCH---------HHHHHHHHHHH-HHHHHh--CCeEEEe---C----HHHHHHHcCCCEEE
Confidence 3677788999999999988752 22333333322 222222 2456666 2 24567788999999
Q ss_pred EEccC
Q 024250 175 IENSR 179 (270)
Q Consensus 175 ld~~~ 179 (270)
+....
T Consensus 85 lg~~d 89 (211)
T PRK03512 85 LGQED 89 (211)
T ss_pred cChHh
Confidence 97643
No 55
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=89.41 E-value=6.5 Score=32.79 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD 171 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd 171 (270)
+.+.++.+.+.|+++||++.+.+.. ..+.+.+.. +..+.... ++.+++| +.++...++++|
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~~---------~~~~~~~~~-~~~~~~~~--~~~l~~~-------~~~~~a~~~gad 83 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLDT---------RERLELARA-LKELCRRY--GVPLIVN-------DRVDLALAVGAD 83 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCH---------HHHHHHHHH-HHHHHHHh--CCeEEEe-------ChHHHHHHcCCC
Confidence 3455677888899999999886431 112222222 33332222 2445555 235788899999
Q ss_pred EEEEEcc
Q 024250 172 VITIENS 178 (270)
Q Consensus 172 ~l~ld~~ 178 (270)
++++...
T Consensus 84 ~vh~~~~ 90 (212)
T PRK00043 84 GVHLGQD 90 (212)
T ss_pred EEecCcc
Confidence 9999654
No 56
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=89.23 E-value=7.4 Score=31.68 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
.+.+.++++.+.|+++||++.+.... ....+. ...++..+... +..+.+| + .++...+.++
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~~~~---------~~~~~~-~~~i~~~~~~~--~~~l~~~----~---~~~~a~~~g~ 73 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKDLSA---------RELLEL-ARALRELCRKY--GVPLIIN----D---RVDLALAVGA 73 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCH---------HHHHHH-HHHHHHHHHHh--CCeEEEe----C---hHHHHHHcCC
Confidence 34456777888999999999875432 112222 23343333322 2334443 2 2567789999
Q ss_pred CEEEEEccC
Q 024250 171 DVITIENSR 179 (270)
Q Consensus 171 d~l~ld~~~ 179 (270)
|+++++...
T Consensus 74 ~~vh~~~~~ 82 (196)
T cd00564 74 DGVHLGQDD 82 (196)
T ss_pred CEEecCccc
Confidence 999999644
No 57
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=88.94 E-value=13 Score=31.39 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=81.0
Q ss_pred HHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEEE
Q 024250 96 VEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 175 (270)
Q Consensus 96 ~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~l 175 (270)
+.++.++||++|=|---+-..+. ...+.++..++..++++.+.+... ++++.+-++ +. ++++..++.+++.+.
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~--~~v~~~eE~~rl~~~l~~i~~~~~-~~plSIDT~--~~-~v~~~aL~~g~~~in- 97 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGA--TPVSEEEEMERLVPVLQAIREENP-DVPLSIDTF--NP-EVAEAALKAGADIIN- 97 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTS--SSSHHHHHHHHHHHHHHHHHHHHT-TSEEEEEES--SH-HHHHHHHHHTSSEEE-
T ss_pred HHHHHHhcCCEEEecccccCCCC--CcCCHHHHHHHHHHHHHHHhccCC-CeEEEEECC--CH-HHHHHHHHcCcceEE-
Confidence 77788999999877632211111 111344567788888888765111 256777776 33 456666677888654
Q ss_pred EccC-C-CchhHHHhhhcccCCCeeeceEecCCC-CCCCCH-------HHHHHHHHHH----hc-cccCCceEecCCCCC
Q 024250 176 ENSR-S-DEKLLSVFREGVKYGAGIGPGVYDIHS-PRIPST-------EEIADRINKM----LA-VLETNILWVNPDCGL 240 (270)
Q Consensus 176 d~~~-~-~~~~l~~l~~~~~~~~~l~~GvVd~~~-~~~e~~-------e~v~~~i~~~----~~-~~~~~~l~vsp~Cgl 240 (270)
|... . +.+.+...+++ +..+++=-.++.. ..-+++ +++.+.+++- .+ -++.+++++.|.=||
T Consensus 98 d~~~~~~~~~~~~l~a~~---~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf 174 (210)
T PF00809_consen 98 DISGFEDDPEMLPLAAEY---GAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGF 174 (210)
T ss_dssp ETTTTSSSTTHHHHHHHH---TSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS
T ss_pred ecccccccchhhhhhhcC---CCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCc
Confidence 4332 2 45566777765 3222222223111 112222 3333333331 11 145699999999999
Q ss_pred CCCCHhHHHHHHHHHHH
Q 024250 241 KTRKYTEVKPALSNMVA 257 (270)
Q Consensus 241 ~~~~~~~a~~kL~~l~~ 257 (270)
..+++...+-|+.+..
T Consensus 175 -~~~~~~~~~~l~~i~~ 190 (210)
T PF00809_consen 175 -GKDPEQNLELLRNIEE 190 (210)
T ss_dssp -STTHHHHHHHHHTHHH
T ss_pred -CCCHHHHHHHHHHHHH
Confidence 6677766666665554
No 58
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=87.15 E-value=21 Score=31.76 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 93 KDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
.+.+.++.+.||++|=|=-.+-..+. ..-+.++.++++.++++.+.+..+ .++.+-|+. . ++++..++.++|.
T Consensus 41 ~~~a~~~~~~GAdIIDIGgeSTrPg~--~~v~~eeE~~Rv~pvI~~l~~~~~--~~ISIDT~~--~-~va~~AL~~Gadi 113 (282)
T PRK11613 41 VKHANLMINAGATIIDVGGESTRPGA--AEVSVEEELDRVIPVVEAIAQRFE--VWISVDTSK--P-EVIRESAKAGAHI 113 (282)
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHHHHhcCC--CeEEEECCC--H-HHHHHHHHcCCCE
Confidence 34466777889999877643322111 111445567778888877754432 456777663 2 4677788889988
Q ss_pred EEEEccCCCchhHHHhhhcccCCCeeeceEecC--CCCC-C---CC-H----HHHHHHHHHHhcc-ccCCceEecCCCCC
Q 024250 173 ITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI--HSPR-I---PS-T----EEIADRINKMLAV-LETNILWVNPDCGL 240 (270)
Q Consensus 173 l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~--~~~~-~---e~-~----e~v~~~i~~~~~~-~~~~~l~vsp~Cgl 240 (270)
+.==..-.+.+.++.++++ +-.+++--..+ ++.. . ++ . +...++++.+.+. ++.+++++.|+=||
T Consensus 114 INDI~g~~d~~~~~~~a~~---~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF 190 (282)
T PRK11613 114 INDIRSLSEPGALEAAAET---GLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGF 190 (282)
T ss_pred EEECCCCCCHHHHHHHHHc---CCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCc
Confidence 7210111133445666553 22222221111 1111 1 12 2 2334555555442 34579999998776
Q ss_pred CCCCHhHHHHHHHHH
Q 024250 241 KTRKYTEVKPALSNM 255 (270)
Q Consensus 241 ~~~~~~~a~~kL~~l 255 (270)
+. +.++..+-|+.+
T Consensus 191 ~k-~~~~n~~ll~~l 204 (282)
T PRK11613 191 GK-NLSHNYQLLARL 204 (282)
T ss_pred CC-CHHHHHHHHHHH
Confidence 54 445334444433
No 59
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=86.58 E-value=20 Score=30.78 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
.+.+++++|.++|++++.+|=-.-....... +.-..++.+++....+. ..+++|+. +....++.+.++++
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~------~G~~~v~~lr~~~~~~~--lDvHLm~~--~p~~~i~~~~~~Ga 89 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDGHFVPNLS------FGPPVVKSLRKHLPNTF--LDCHLMVS--NPEKWVDDFAKAGA 89 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcC------cCHHHHHHHHhcCCCCC--EEEEECCC--CHHHHHHHHHHcCC
Confidence 5677889999999999999943221111111 11223445554332221 33444433 45556788999999
Q ss_pred CEEEEEccC
Q 024250 171 DVITIENSR 179 (270)
Q Consensus 171 d~l~ld~~~ 179 (270)
|.+++=...
T Consensus 90 d~itvH~ea 98 (228)
T PTZ00170 90 SQFTFHIEA 98 (228)
T ss_pred CEEEEeccC
Confidence 999887654
No 60
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=86.07 E-value=38 Score=36.43 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=94.0
Q ss_pred ccccchHHHHHhh-hccCC---CCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHH
Q 024250 60 KGMLTGPVTILNW-SFVRN---DQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHS 135 (270)
Q Consensus 60 K~~l~GP~Tla~~-~~~~~---~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~ 135 (270)
-+.-.||++-... +.+.. |.+ --.+++.+.|.+.++.|.+.|+|+|-+.- +. +.. ....+..+
T Consensus 132 VAGSIGP~g~~~sl~p~~e~pg~~~--it~del~~~y~eQi~~L~e~GVDllliET--i~--------d~~-EakAal~a 198 (1229)
T PRK09490 132 VAGVLGPTNRTASISPDVNDPGFRN--VTFDELVAAYREQTRGLIEGGADLILIET--IF--------DTL-NAKAAIFA 198 (1229)
T ss_pred EEEecCCCCcccccCCCcccccccC--CCHHHHHHHHHHHHHHHHhCCCCEEEEee--eC--------CHH-HHHHHHHH
Confidence 3345788884322 22211 221 11367788999999999999999876652 10 111 13344555
Q ss_pred HHHHhcCCCCCceEEEeecc----C------CchhHHHHHHhCCCCEEEEEccCCCc---hhHHHhhhcccCCCeee---
Q 024250 136 FRITNCGVQDTTQIHTHMCY----S------NFNDIIHSIIDMDADVITIENSRSDE---KLLSVFREGVKYGAGIG--- 199 (270)
Q Consensus 136 ~~~~~~~~~~~~~i~lH~c~----g------~~~~~~~~l~~~~vd~l~ld~~~~~~---~~l~~l~~~~~~~~~l~--- 199 (270)
+++..+....+.++++...+ | +....+..+..++++++++--..+.. ..++.+.+. .+..++
T Consensus 199 ~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~--~~~pi~vyP 276 (1229)
T PRK09490 199 VEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRHAKPLSIGLNCALGADELRPYVEELSRI--ADTYVSAHP 276 (1229)
T ss_pred HHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHh--cCCeEEEEe
Confidence 55543322223455555443 1 12244555667899999999775332 233444332 122222
Q ss_pred -ceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCC
Q 024250 200 -PGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKT 242 (270)
Q Consensus 200 -~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~ 242 (270)
.|.-+....+-++|++..+.+.+..+. | .--+|.-.||..+
T Consensus 277 NAGlP~~~~~yd~tPe~~a~~~~~~~~~-G-~v~IIGGCCGTtP 318 (1229)
T PRK09490 277 NAGLPNAFGEYDETPEEMAAQIGEFAES-G-FLNIVGGCCGTTP 318 (1229)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHc-C-CCCEEEecCCCCH
Confidence 344333346778999999888887663 2 1346889999875
No 61
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=85.10 E-value=22 Score=29.92 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD 171 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd 171 (270)
+.++.+++.++||+|+-+|=..-.....++ +..-+++++++.+.. +.-.-+|.---|..+..+.+..++++
T Consensus 19 L~~e~~~~l~~GadwlHlDVMDg~FVpNiT------~G~pvV~slR~~~~~---~~ffD~HmMV~~Peq~V~~~a~agas 89 (224)
T KOG3111|consen 19 LAAECKKMLDAGADWLHLDVMDGHFVPNIT------FGPPVVESLRKHTGA---DPFFDVHMMVENPEQWVDQMAKAGAS 89 (224)
T ss_pred HHHHHHHHHHcCCCeEEEeeecccccCCcc------cchHHHHHHHhccCC---CcceeEEEeecCHHHHHHHHHhcCcc
Confidence 456688888999999999954333222222 123345666653221 11233455545777889999999999
Q ss_pred EEEEEccCC-C-chhHHHhhhcccCCCeeeceE
Q 024250 172 VITIENSRS-D-EKLLSVFREGVKYGAGIGPGV 202 (270)
Q Consensus 172 ~l~ld~~~~-~-~~~l~~l~~~~~~~~~l~~Gv 202 (270)
.++|-+... + .+..+.+++ .|..+++-+
T Consensus 90 ~~tfH~E~~q~~~~lv~~ir~---~Gmk~G~al 119 (224)
T KOG3111|consen 90 LFTFHYEATQKPAELVEKIRE---KGMKVGLAL 119 (224)
T ss_pred eEEEEEeeccCHHHHHHHHHH---cCCeeeEEe
Confidence 988776442 2 344455554 344454444
No 62
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=84.99 E-value=36 Score=36.49 Aligned_cols=165 Identities=12% Similarity=0.072 Sum_probs=95.0
Q ss_pred cccchHHHHHhhhc-cCCCCcHHH-HHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHH
Q 024250 61 GMLTGPVTILNWSF-VRNDQPRHE-TCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRI 138 (270)
Q Consensus 61 ~~l~GP~Tla~~~~-~~~~~~~~~-l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~ 138 (270)
+.-.||+.-..... +..++..++ -.+++.+.|.+.++.|.+.|+|+|-+.- ++ +.. ....++.++++
T Consensus 117 AGsIGP~g~~~~lgp~~~~~~~~~~t~del~~~y~eq~~~L~~~GvD~iliET------i~----d~~-EakAal~a~~~ 185 (1178)
T TIGR02082 117 AGSMGPTNKTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLIET------CF----DTL-NAKAALFAAET 185 (1178)
T ss_pred EEEeCCCCCCccCCCccccCccCCCCHHHHHHHHHHHHHHHHhCCCCEEEEec------cC----CHH-HHHHHHHHHHH
Confidence 34578888543211 111111111 2467788999999999999999876652 10 111 23445566665
Q ss_pred HhcCCCCCceEEEe-eccC---------CchhHHHHHHhCCCCEEEEEccCCCch---hHHHhhhcccCCCeeeceEe--
Q 024250 139 TNCGVQDTTQIHTH-MCYS---------NFNDIIHSIIDMDADVITIENSRSDEK---LLSVFREGVKYGAGIGPGVY-- 203 (270)
Q Consensus 139 ~~~~~~~~~~i~lH-~c~g---------~~~~~~~~l~~~~vd~l~ld~~~~~~~---~l~~l~~~~~~~~~l~~GvV-- 203 (270)
+.+....+.++++. +|+. +....+..+..++++++++--..+... .++.+.+. .+ ..+++-
T Consensus 186 ~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~~~~~avGlNCs~gP~~m~~~l~~l~~~--~~--~pi~vyPN 261 (1178)
T TIGR02082 186 VFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEHAGIDMIGLNCALGPDEMRPHLKHLSEH--AE--AYVSCHPN 261 (1178)
T ss_pred HHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHHHHHh--cC--ceEEEEeC
Confidence 54322223566777 6642 122455666778999999998753322 23444332 12 234433
Q ss_pred ----cCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCC
Q 024250 204 ----DIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKT 242 (270)
Q Consensus 204 ----d~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~ 242 (270)
+....+-++|++..+.+.+..+.- .--+|.-.||..+
T Consensus 262 AGlP~~~~~yd~~p~~~a~~~~~~~~~g--gv~IIGGCCGTtP 302 (1178)
T TIGR02082 262 AGLPNAFGEYDLTPDELAKALADFAAEG--GLNIVGGCCGTTP 302 (1178)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHHHhC--CCcEEEecCCCCH
Confidence 223356789999888888876531 2346889999875
No 63
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=84.74 E-value=16 Score=30.11 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
+.++.+.+.|+++||+-++.+.. .++.+.+ ..+..+++... ..+++| + .++...+.++|++
T Consensus 17 ~~~~~~~~~g~~~v~lR~~~~~~---------~~~~~~~-~~l~~~~~~~~--~~l~i~---~----~~~la~~~g~~Gv 77 (196)
T TIGR00693 17 NRVEAALKGGVTLVQLRDKGSNT---------RERLALA-EKLQELCRRYG--VPFIVN---D----RVDLALALGADGV 77 (196)
T ss_pred HHHHHHHhcCCCEEEEecCCCCH---------HHHHHHH-HHHHHHHHHhC--CeEEEE---C----HHHHHHHcCCCEE
Confidence 44566778899999999876542 1222222 22333332222 445555 2 2467788999999
Q ss_pred EEEcc
Q 024250 174 TIENS 178 (270)
Q Consensus 174 ~ld~~ 178 (270)
|+...
T Consensus 78 Hl~~~ 82 (196)
T TIGR00693 78 HLGQD 82 (196)
T ss_pred ecCcc
Confidence 99654
No 64
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=84.22 E-value=14 Score=33.94 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 93 KDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
.+.++++.+.|+.+||+-++.+.. ..+.+.+. .+..++.... ..++|| ++ .+.....++|+
T Consensus 160 l~~l~~al~~Gv~~VQLR~K~~~~---------~~~~~~a~-~L~~l~~~~~--~~lIIN---D~----vdlAl~~~aDG 220 (347)
T PRK02615 160 LEVVEAALKGGVTLVQYRDKTADD---------RQRLEEAK-KLKELCHRYG--ALFIVN---DR----VDIALAVDADG 220 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCH---------HHHHHHHH-HHHHHHHHhC--CeEEEe---Ch----HHHHHHcCCCE
Confidence 344667778899999999987642 12233332 3344433322 345555 22 46778899999
Q ss_pred EEEEcc
Q 024250 173 ITIENS 178 (270)
Q Consensus 173 l~ld~~ 178 (270)
+|+...
T Consensus 221 VHLgq~ 226 (347)
T PRK02615 221 VHLGQE 226 (347)
T ss_pred EEeChh
Confidence 999754
No 65
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=82.72 E-value=38 Score=30.91 Aligned_cols=146 Identities=14% Similarity=0.241 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCCEEEecc------CccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee--ccCCchhHH
Q 024250 91 AIKDEVEDLEKAGINVIQIDE------AALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM--CYSNFNDII 162 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDE------P~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~--c~g~~~~~~ 162 (270)
...+.++.|.++|+++|.+== .++....+.. .. . +.++.+.+..+ +.++...+ .+++..+ +
T Consensus 26 ~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~--~~---~----e~i~~~~~~~~-~~~~~~ll~pg~~~~~d-l 94 (337)
T PRK08195 26 QVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAH--TD---E----EYIEAAAEVVK-QAKIAALLLPGIGTVDD-L 94 (337)
T ss_pred HHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCC--CH---H----HHHHHHHHhCC-CCEEEEEeccCcccHHH-H
Confidence 445556778899999998831 1221111111 11 1 12223222232 13333322 3345543 5
Q ss_pred HHHHhCCCCEEEEEccCCCch----hHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 163 HSIIDMDADVITIENSRSDEK----LLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 163 ~~l~~~~vd~l~ld~~~~~~~----~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
+...++++|.+.+-+..+..+ ..+..++ .|..+...+.++. ..+++.+.+.++.+.+ .|.+.+.+.-+.
T Consensus 95 ~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~---~G~~v~~~l~~a~---~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~ 167 (337)
T PRK08195 95 KMAYDAGVRVVRVATHCTEADVSEQHIGLARE---LGMDTVGFLMMSH---MAPPEKLAEQAKLMES-YGAQCVYVVDSA 167 (337)
T ss_pred HHHHHcCCCEEEEEEecchHHHHHHHHHHHHH---CCCeEEEEEEecc---CCCHHHHHHHHHHHHh-CCCCEEEeCCCC
Confidence 677889999988765333222 2233333 3667777777763 4588999998888765 588899988888
Q ss_pred CCCCCCHhHHHHHHHHHH
Q 024250 239 GLKTRKYTEVKPALSNMV 256 (270)
Q Consensus 239 gl~~~~~~~a~~kL~~l~ 256 (270)
|.. +|+...+-++.+.
T Consensus 168 G~~--~P~~v~~~v~~l~ 183 (337)
T PRK08195 168 GAL--LPEDVRDRVRALR 183 (337)
T ss_pred CCC--CHHHHHHHHHHHH
Confidence 854 5665444444443
No 66
>PRK08999 hypothetical protein; Provisional
Probab=82.58 E-value=14 Score=33.08 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
+.++++.+.|+++||+-++.+.. .++.+. ...+..++..- ++.++|| ++ .+...+.++|++
T Consensus 148 ~~~~~~l~~g~~~vqlR~k~~~~---------~~~~~~-~~~l~~~~~~~--~~~liin---d~----~~la~~~~~~Gv 208 (312)
T PRK08999 148 ARLERALAAGIRLIQLRAPQLPP---------AAYRAL-ARAALGLCRRA--GAQLLLN---GD----PELAEDLGADGV 208 (312)
T ss_pred HHHHHHHHCCCcEEEEeCCCCCH---------HHHHHH-HHHHHHHHHHh--CCEEEEE---Cc----HHHHHhcCCCEE
Confidence 44555568899999999987542 122222 33344444332 2456776 33 367788999999
Q ss_pred EEEccC
Q 024250 174 TIENSR 179 (270)
Q Consensus 174 ~ld~~~ 179 (270)
|+-...
T Consensus 209 Hl~~~d 214 (312)
T PRK08999 209 HLTSAQ 214 (312)
T ss_pred EcChhh
Confidence 998644
No 67
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=82.52 E-value=31 Score=29.77 Aligned_cols=81 Identities=12% Similarity=0.050 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHH----------HHHHHHHHHHHhcCCCCCceEEEeeccCC---
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFY----------LDWAVHSFRITNCGVQDTTQIHTHMCYSN--- 157 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~lH~c~g~--- 157 (270)
...++++.|.++|+++|.||=|.--...+.. ..+.. .+...+.++++-+.. ..++++-+++..
T Consensus 15 ~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~--~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~lm~y~n~~~~ 90 (242)
T cd04724 15 TTLEILKALVEAGADIIELGIPFSDPVADGP--VIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVLMGYYNPILQ 90 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEEEEEecCHHHH
Confidence 3445677888999999999965522212111 00100 112333444443222 234445457532
Q ss_pred --chhHHHHHHhCCCCEEEE
Q 024250 158 --FNDIIHSIIDMDADVITI 175 (270)
Q Consensus 158 --~~~~~~~l~~~~vd~l~l 175 (270)
....++.+.++++|++.+
T Consensus 91 ~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 91 YGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred hCHHHHHHHHHHCCCcEEEE
Confidence 245678889999999998
No 68
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.17 E-value=30 Score=31.68 Aligned_cols=93 Identities=12% Similarity=0.042 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccCc-------cccCCCCC----CccH---HHHHHHHHHHHHHHhc-CCCCCceE
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDEAA-------LREGLPLR----KSEH---AFYLDWAVHSFRITNC-GVQDTTQI 149 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDEP~-------l~~~l~~~----~~~~---~~~~~~~~~~~~~~~~-~~~~~~~i 149 (270)
++.+.+.|.+-++.+.++|++.|+|.--- |+.....+ .+.. .++..++++++++.+. .++.+..+
T Consensus 139 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v 218 (353)
T cd04735 139 IEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFIL 218 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence 46777778888888889999999998521 12111011 1122 2233344444444331 01134566
Q ss_pred EEeeccCCc----------hhHHHHHHhCCCCEEEEEc
Q 024250 150 HTHMCYSNF----------NDIIHSIIDMDADVITIEN 177 (270)
Q Consensus 150 ~lH~c~g~~----------~~~~~~l~~~~vd~l~ld~ 177 (270)
.+.+...++ -.+++.|.+.++|.|++-.
T Consensus 219 ~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 219 GYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred EEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 666653221 1466778889999999864
No 69
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=80.01 E-value=17 Score=30.40 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCEEEecc
Q 024250 92 IKDEVEDLEKAGINVIQIDE 111 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDE 111 (270)
+.+.++.+.+.|+++||+|.
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~ 37 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDV 37 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeC
Confidence 45567788899999999985
No 70
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=79.66 E-value=16 Score=30.27 Aligned_cols=73 Identities=25% Similarity=0.308 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD 171 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd 171 (270)
+.+.++.+.++|+++||+|....... +...-.+ + ..+.+++.. + ..+.+|...-|..+.++.+.++++|
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~-~~~~~~~----~-~~~~i~~~~---~--~~~~v~l~~~d~~~~~~~~~~~g~d 82 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFV-PNLTFGP----P-VVKALRKHT---D--LPLDVHLMVENPERYIEAFAKAGAD 82 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCC-CccccCH----H-HHHHHHhhC---C--CcEEEEeeeCCHHHHHHHHHHcCCC
Confidence 45567788899999999986433211 1100011 1 122333322 1 2234554433544567788899999
Q ss_pred EEEE
Q 024250 172 VITI 175 (270)
Q Consensus 172 ~l~l 175 (270)
++.+
T Consensus 83 gv~v 86 (211)
T cd00429 83 IITF 86 (211)
T ss_pred EEEE
Confidence 9654
No 71
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=78.54 E-value=32 Score=29.25 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
..+++..+.|++.+|+-|-.... .++.+.+. .+..++.... +++.++ +++ +..++.++|++
T Consensus 25 ~~ve~al~~Gv~~vQlR~K~~~~---------~~~~~~a~-~~~~lc~~~~--v~liIN---d~~----dlA~~~~AdGV 85 (211)
T COG0352 25 EWVEAALKGGVTAVQLREKDLSD---------EEYLALAE-KLRALCQKYG--VPLIIN---DRV----DLALAVGADGV 85 (211)
T ss_pred HHHHHHHhCCCeEEEEecCCCCh---------HHHHHHHH-HHHHHHHHhC--CeEEec---CcH----HHHHhCCCCEE
Confidence 34556668899999999876542 12222222 3333333332 444544 334 66778999999
Q ss_pred EEEccC
Q 024250 174 TIENSR 179 (270)
Q Consensus 174 ~ld~~~ 179 (270)
|+-...
T Consensus 86 HlGq~D 91 (211)
T COG0352 86 HLGQDD 91 (211)
T ss_pred EcCCcc
Confidence 998653
No 72
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=78.44 E-value=30 Score=29.51 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=39.2
Q ss_pred HHHHHHHHcC-CCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 94 DEVEDLEKAG-INVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 94 ~~~~~l~~~G-~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
+.++++.+.| +++||+-|+.++. .++.+.+.+ +..++... ++.++|+ + .++...++++|+
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l~~---------~~~~~~a~~-l~~l~~~~--gv~liIN---d----~~dlA~~~~adG 90 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGLDE---------ATFQKQAEK-LVPVIQEA--GAAALIA---G----DSRIAGRVKADG 90 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCCCH---------HHHHHHHHH-HHHHHHHh--CCEEEEe---C----HHHHHHHhCCCE
Confidence 3455666789 7999999987652 233333333 33333322 2445555 2 246677889999
Q ss_pred EEEEc
Q 024250 173 ITIEN 177 (270)
Q Consensus 173 l~ld~ 177 (270)
+|+-.
T Consensus 91 VHLg~ 95 (221)
T PRK06512 91 LHIEG 95 (221)
T ss_pred EEECc
Confidence 99864
No 73
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=78.13 E-value=27 Score=33.62 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
+.++++.+.|+.+|||-++.+.. ..+.+.+.+.. .++... ++.+++| ++ ++...+.++|++
T Consensus 311 ~~l~~~l~~Gv~~vqlR~k~~~~---------~~~~~~a~~l~-~~~~~~--~~~liin---d~----~~lA~~~~adGv 371 (502)
T PLN02898 311 DAVRAAIEGGATIVQLREKEAET---------REFIEEAKACL-AICRSY--GVPLLIN---DR----VDVALACDADGV 371 (502)
T ss_pred HHHHHHHHcCCCEEEEccCCCCH---------HHHHHHHHHHH-HHHHHh--CCEEEEc---Ch----HHHHHhcCCCEE
Confidence 45777888999999999987542 22333333332 232322 2456665 22 356678899999
Q ss_pred EEEcc
Q 024250 174 TIENS 178 (270)
Q Consensus 174 ~ld~~ 178 (270)
|+...
T Consensus 372 Hl~~~ 376 (502)
T PLN02898 372 HLGQS 376 (502)
T ss_pred EeChH
Confidence 99654
No 74
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.57 E-value=19 Score=31.89 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++....++|+++||+|.|.... +..+++.++ ...+ ++.+-.. |+.+ +.+..+.++++|.+
T Consensus 194 ea~~A~~~GaDiI~LDn~~~e~------------l~~~v~~~~---~~~~---~~~ieAs-GgIt~~ni~~ya~~GvD~I 254 (273)
T PRK05848 194 EAKNAMNAGADIVMCDNMSVEE------------IKEVVAYRN---ANYP---HVLLEAS-GNITLENINAYAKSGVDAI 254 (273)
T ss_pred HHHHHHHcCCCEEEECCCCHHH------------HHHHHHHhh---ccCC---CeEEEEE-CCCCHHHHHHHHHcCCCEE
Confidence 4555667899999999874321 222222221 1111 2333344 6664 57888999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
++=.
T Consensus 255 svG~ 258 (273)
T PRK05848 255 SSGS 258 (273)
T ss_pred EeCh
Confidence 9875
No 75
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=77.27 E-value=53 Score=29.31 Aligned_cols=146 Identities=9% Similarity=0.010 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-CchhHHHHHHhCCC
Q 024250 93 KDEVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NFNDIIHSIIDMDA 170 (270)
Q Consensus 93 ~~~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~~~~~~~l~~~~v 170 (270)
+..+++..+.+..+ ||+.+..+.. . . .+......+.+.+..+ +++.||.=-| ++ +.+....++++
T Consensus 32 ~avi~AAee~~sPvIlq~s~~~~~~-~-----~----~~~~~~~~~~~a~~~~--VPValHLDHg~~~-e~i~~ai~~GF 98 (286)
T PRK12738 32 QAILEVCSEMRSPVILAGTPGTFKH-I-----A----LEEIYALCSAYSTTYN--MPLALHLDHHESL-DDIRRKVHAGV 98 (286)
T ss_pred HHHHHHHHHHCCCEEEEcCcchhhh-C-----C----HHHHHHHHHHHHHHCC--CCEEEECCCCCCH-HHHHHHHHcCC
Confidence 33344555567775 8988766543 1 1 1223344444444443 5688897554 45 45566779999
Q ss_pred CEEEEEccCCCc-hhHHHhhhcc----cCC--CeeeceEecCCC---------CCCCCHHHHHHHHHHHhccccCCceEe
Q 024250 171 DVITIENSRSDE-KLLSVFREGV----KYG--AGIGPGVYDIHS---------PRIPSTEEIADRINKMLAVLETNILWV 234 (270)
Q Consensus 171 d~l~ld~~~~~~-~~l~~l~~~~----~~~--~~l~~GvVd~~~---------~~~e~~e~v~~~i~~~~~~~~~~~l~v 234 (270)
+.+-+|-+..++ ++++.-++.. ..+ -.-=+|.|-+.. ....+|+++++-+++- +-.++
T Consensus 99 tSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~T------gvD~L 172 (286)
T PRK12738 99 RSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELT------GVDSL 172 (286)
T ss_pred CeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHh------CCCEE
Confidence 999999876443 4444333210 011 112244443221 2256889888777664 23477
Q ss_pred cCCCCCCCC----CHhHHHHHHHHHHH
Q 024250 235 NPDCGLKTR----KYTEVKPALSNMVA 257 (270)
Q Consensus 235 sp~Cgl~~~----~~~~a~~kL~~l~~ 257 (270)
+++.|-.|- .|..-++-|+.+.+
T Consensus 173 AvaiGt~HG~Y~~~p~Ldfd~l~~I~~ 199 (286)
T PRK12738 173 AVAIGTAHGLYSKTPKIDFQRLAEIRE 199 (286)
T ss_pred EeccCcccCCCCCCCcCCHHHHHHHHH
Confidence 788887773 34444444544433
No 76
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=77.09 E-value=46 Score=29.17 Aligned_cols=93 Identities=18% Similarity=0.107 Sum_probs=54.8
Q ss_pred ceEEEeeccC--CchhHHHHHHhCCCCE--EEEEccC--CCchhHHHhhhcccCCCeeeceEecCCC-CCCCCHHHHHHH
Q 024250 147 TQIHTHMCYS--NFNDIIHSIIDMDADV--ITIENSR--SDEKLLSVFREGVKYGAGIGPGVYDIHS-PRIPSTEEIADR 219 (270)
Q Consensus 147 ~~i~lH~c~g--~~~~~~~~l~~~~vd~--l~ld~~~--~~~~~l~~l~~~~~~~~~l~~GvVd~~~-~~~e~~e~v~~~ 219 (270)
.++++|+..+ ...+.++.|.+.++.. +.+.... .+.+.++.+.+ .|-.++++...+.. ....+.+...+.
T Consensus 150 ~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~---~G~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (293)
T cd00530 150 VPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAA---LGAYLEFDGIGKDKIFGYPSDETRADA 226 (293)
T ss_pred CeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHh---CCCEEEeCCCCcccccCCCCHHHHHHH
Confidence 5689997643 3456778887776632 2333221 23444444544 24444444322211 112234566777
Q ss_pred HHHHhccccCCceEecCCCCCCC
Q 024250 220 INKMLAVLETNILWVNPDCGLKT 242 (270)
Q Consensus 220 i~~~~~~~~~~~l~vsp~Cgl~~ 242 (270)
++++++..+.+++++++|++..+
T Consensus 227 l~~~~~~~~~d~ill~TD~p~~~ 249 (293)
T cd00530 227 VKALIDEGYGDRLLLSHDVFRKS 249 (293)
T ss_pred HHHHHHCCCcCCEEEeCCcCchh
Confidence 88888888889999999998753
No 77
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.47 E-value=15 Score=32.62 Aligned_cols=66 Identities=15% Similarity=0.339 Sum_probs=41.2
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++.+..++|+++||+|-+... .+..+++.++... .+ .++.+-.. |+.+ +.+..+.++++|.|
T Consensus 194 ea~~a~~agaDiI~LDn~~~e------------~l~~~v~~l~~~~--~~--~~~~leaS-GGI~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 194 DALKAAKAGADIIMLDNMTPE------------EIREVIEALKREG--LR--ERVKIEVS-GGITPENIEEYAKLDVDVI 256 (278)
T ss_pred HHHHHHHcCcCEEEECCCCHH------------HHHHHHHHHHhcC--cC--CCEEEEEE-CCCCHHHHHHHHHcCCCEE
Confidence 455566789999999985321 1333444443321 11 12344455 5564 67889999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
+.=.
T Consensus 257 s~ga 260 (278)
T PRK08385 257 SLGA 260 (278)
T ss_pred EeCh
Confidence 9875
No 78
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=76.06 E-value=24 Score=33.45 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=40.9
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT 174 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ 174 (270)
.++++.+.|+++||+-|..+.. .++.+.+..+. .+.+.- ++++.++- .++...+.++|++|
T Consensus 222 ~ve~aL~aGv~~VQLReK~ls~---------~el~~la~~l~-~l~~~~--gv~LiIND-------~~dlAl~~gAdGVH 282 (437)
T PRK12290 222 WIERLLPLGINTVQLRIKDPQQ---------ADLEQQIIRAI-ALGREY--NAQVFIND-------YWQLAIKHQAYGVH 282 (437)
T ss_pred HHHHHHhCCCCEEEEeCCCCCH---------HHHHHHHHHHH-HHHHHh--CCEEEEEC-------HHHHHHHcCCCEEE
Confidence 4778889999999999987652 23333333332 223322 24556652 24677888999999
Q ss_pred EEcc
Q 024250 175 IENS 178 (270)
Q Consensus 175 ld~~ 178 (270)
+-..
T Consensus 283 LGQe 286 (437)
T PRK12290 283 LGQE 286 (437)
T ss_pred cChH
Confidence 8764
No 79
>PRK10508 hypothetical protein; Provisional
Probab=76.03 E-value=4.6 Score=36.79 Aligned_cols=47 Identities=6% Similarity=0.089 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHH
Q 024250 210 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAK 260 (270)
Q Consensus 210 ~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~ 260 (270)
++|+++|+++|++..+.++.+++++.+.+ .+.+...+.++.+.++.+
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del~~~~~~----~~~e~~~~S~~lla~~~~ 331 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEIMVNGQI----FDHQARLHSFELAMDVKE 331 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEEEEECCC----CCHHHHHHHHHHHHHHhh
Confidence 68999999999999998999999988887 366755666666665543
No 80
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=75.56 E-value=48 Score=31.05 Aligned_cols=152 Identities=12% Similarity=0.158 Sum_probs=71.6
Q ss_pred HHHHHHcCCCEEEecc-CccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHH-------h
Q 024250 96 VEDLEKAGINVIQIDE-AALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSII-------D 167 (270)
Q Consensus 96 ~~~l~~~G~~~IQiDE-P~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~-------~ 167 (270)
-+.+.++|-+|=-+.- |. ...+....++.+++++...+.++.+.+. ++++ +|| ||.+++.... .
T Consensus 49 k~~ie~~GL~~~vvEs~pv-~e~Ik~g~~~rd~~Ienyk~~irNla~~---GI~v---icY-NFMPv~dW~RT~l~~~~~ 120 (394)
T TIGR00695 49 KEYIESAGLHWSVVESVPV-HEAIKTGTGNYGRWIENYKQTLRNLAQC---GIKT---VCY-NFMPVLDWTRTDLFYPLP 120 (394)
T ss_pred HHHHHHcCCeEEEEeCCCc-cHHHHcCCCcHHHHHHHHHHHHHHHHHc---CCCE---EEE-EeccccccccccCcccCC
Confidence 3444558988733322 21 1222222345677788778888776542 2333 576 7765554421 1
Q ss_pred CCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHH----HHhccccCCceEecCCCC----
Q 024250 168 MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRIN----KMLAVLETNILWVNPDCG---- 239 (270)
Q Consensus 168 ~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~----~~~~~~~~~~l~vsp~Cg---- 239 (270)
=+..++.+|...-..-.+..+++. | ...+-..+..++.++..+ +....++.+.+...|+++
T Consensus 121 ~Ga~al~fd~~~~~~~d~~~l~r~---------~--~~~~~~~e~~~~a~~~f~~~~~~~~~~L~~~ii~~lpGw~~~~~ 189 (394)
T TIGR00695 121 DGSKALRFDKIKFAAFELHILKRP---------D--AEKTYNQEELIRAVEEASDMSEQDIAQLTRNIIAGLPGAEEGYT 189 (394)
T ss_pred CCceeEeeehhhhhccChHhhhcc---------c--ccccCCHHHHHHHHHHHHhCCHHHHHHhhhhhhhcCCCCCcccc
Confidence 233455555432111112222221 0 000101111222222222 122234445666778877
Q ss_pred ----------CCCCCHhHHHHHHHHHHHHHHHHHHHH
Q 024250 240 ----------LKTRKYTEVKPALSNMVAAAKLLRTQL 266 (270)
Q Consensus 240 ----------l~~~~~~~a~~kL~~l~~~a~~~~~~~ 266 (270)
....+.+..|++|....+..--+.++.
T Consensus 190 ~~~~~~~~~~y~~i~~e~lwenl~yFL~~ViPvAEe~ 226 (394)
T TIGR00695 190 LDRFKELLAAYKDIDEEKLRDNLAFFLQEILPVAEEY 226 (394)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 344678888888887666554444443
No 81
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.24 E-value=13 Score=33.25 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADV 172 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~ 172 (270)
+++.+..++|+++||+|.-+.. + ...+++.+ ++ ++.+-.. |+.+ +.++....+++|.
T Consensus 208 eea~~a~~agaDiImLDnmspe-----------~-l~~av~~~-------~~--~~~leaS-GGI~~~ni~~yA~tGVD~ 265 (290)
T PRK06559 208 AAAEEAAAAGADIIMLDNMSLE-----------Q-IEQAITLI-------AG--RSRIECS-GNIDMTTISRFRGLAIDY 265 (290)
T ss_pred HHHHHHHHcCCCEEEECCCCHH-----------H-HHHHHHHh-------cC--ceEEEEE-CCCCHHHHHHHHhcCCCE
Confidence 3466667889999999973221 1 22222222 11 2344555 5553 6788899999999
Q ss_pred EEEEc
Q 024250 173 ITIEN 177 (270)
Q Consensus 173 l~ld~ 177 (270)
|+.=.
T Consensus 266 Is~ga 270 (290)
T PRK06559 266 VSSGS 270 (290)
T ss_pred EEeCc
Confidence 99876
No 82
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=75.00 E-value=13 Score=33.31 Aligned_cols=61 Identities=16% Similarity=0.303 Sum_probs=39.1
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++.+..++|+++||+|.++.. ...++.+.+ +. ++.+-.. |+.+ +.+..+.++++|.|
T Consensus 220 ea~ea~~~gaDiI~LDn~s~e---------------~~~~av~~~----~~--~~~ieaS-GGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 220 ELDQALKAGADIIMLDNFTTE---------------QMREAVKRT----NG--RALLEVS-GNVTLETLREFAETGVDFI 277 (296)
T ss_pred HHHHHHHcCCCEEEeCCCChH---------------HHHHHHHhh----cC--CeEEEEE-CCCCHHHHHHHHhcCCCEE
Confidence 456666789999999985422 112222221 11 2345555 5554 67889999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
++=.
T Consensus 278 s~ga 281 (296)
T PRK09016 278 SVGA 281 (296)
T ss_pred EeCc
Confidence 9876
No 83
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.64 E-value=19 Score=32.19 Aligned_cols=64 Identities=9% Similarity=0.157 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++.+..++|+++||+|.-. ++ ..+.+++.++.. . .++.+-.. |+.+ +.+....++++|.|
T Consensus 211 ea~eal~~gaDiI~LDnm~-----------~e-~vk~av~~~~~~----~--~~v~ieaS-GGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 211 QLDEVLAEGAELVLLDNFP-----------VW-QTQEAVQRRDAR----A--PTVLLESS-GGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred HHHHHHHcCCCEEEeCCCC-----------HH-HHHHHHHHHhcc----C--CCEEEEEE-CCCCHHHHHHHHhcCCCEE
Confidence 4455567899999999522 11 133334433322 1 12345555 5554 67889999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
++=.
T Consensus 272 s~ga 275 (289)
T PRK07896 272 AVGA 275 (289)
T ss_pred EeCh
Confidence 9875
No 84
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.47 E-value=21 Score=31.84 Aligned_cols=64 Identities=19% Similarity=0.364 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCc-hhHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~-~~~~~~l~~~~vd~l 173 (270)
++.+..++|+++||+|-... +. .+.+++.++... + .+.+-.. |+. .+.++.+.++++|.+
T Consensus 208 ea~eA~~~GaD~I~LDn~~~-----------e~-l~~av~~~~~~~---~---~i~leAs-GGIt~~ni~~ya~tGvD~I 268 (288)
T PRK07428 208 QVQEALEYGADIIMLDNMPV-----------DL-MQQAVQLIRQQN---P---RVKIEAS-GNITLETIRAVAETGVDYI 268 (288)
T ss_pred HHHHHHHcCCCEEEECCCCH-----------HH-HHHHHHHHHhcC---C---CeEEEEE-CCCCHHHHHHHHHcCCCEE
Confidence 45555678999999994221 11 233333333211 1 1223334 444 367888999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
++=.
T Consensus 269 svgs 272 (288)
T PRK07428 269 SSSA 272 (288)
T ss_pred EEch
Confidence 9865
No 85
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=72.46 E-value=54 Score=27.08 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
.+.+.++.+.+.|++.|.+| +.......... ...+.++.+.+..+ .++.+|+-.-+..+.++.+.++++
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~---~~Dg~~~~~~~------~~~~~v~~i~~~~~--~~v~v~lm~~~~~~~~~~~~~~ga 80 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVD---VMDGHFVPNLT------FGPPVLEALRKYTD--LPIDVHLMVENPDRYIEDFAEAGA 80 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEc---CCCCCCCCCcc------cCHHHHHHHHhcCC--CcEEEEeeeCCHHHHHHHHHHcCC
Confidence 45667888889999999997 11110000000 01122333322222 234466543345566788889999
Q ss_pred CEEEEEc
Q 024250 171 DVITIEN 177 (270)
Q Consensus 171 d~l~ld~ 177 (270)
|++.+-.
T Consensus 81 dgv~vh~ 87 (210)
T TIGR01163 81 DIITVHP 87 (210)
T ss_pred CEEEEcc
Confidence 9966643
No 86
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.38 E-value=17 Score=32.37 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++.+..++|+++||+|..+.. + ...+++.+ +... .+-.. |+.+ +.+..+.++++|.|
T Consensus 206 ea~ea~~~gaDiI~LDn~s~e--------~----l~~av~~~-------~~~~--~leaS-GGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 206 QLEEALELGVDAVLLDNMTPD--------T----LREAVAIV-------AGRA--ITEAS-GRITPETAPAIAASGVDLI 263 (281)
T ss_pred HHHHHHHcCCCEEEeCCCCHH--------H----HHHHHHHh-------CCCc--eEEEE-CCCCHHHHHHHHhcCCCEE
Confidence 455556789999999975332 1 22222222 1112 24445 5564 67889999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
|+=.
T Consensus 264 s~Ga 267 (281)
T PRK06106 264 SVGW 267 (281)
T ss_pred EeCh
Confidence 9875
No 87
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=72.20 E-value=73 Score=28.50 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccC--cc-ccCCCC----C----CccHHHHHHHHHHHHHHHhcCCCCCceEEEee
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDEA--AL-REGLPL----R----KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM 153 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDEP--~l-~~~l~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~ 153 (270)
++.+.+.+.+.++.+.++|++.|+|.-- .| ...+.. + .+..+.-..+..+.++.+-+.++.+.++.+-+
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 5677788888888889999999999842 11 111111 0 11122223334444444444443334444433
Q ss_pred ccCC-----c-----hhHHHHHHhCCCCEEEEE
Q 024250 154 CYSN-----F-----NDIIHSIIDMDADVITIE 176 (270)
Q Consensus 154 c~g~-----~-----~~~~~~l~~~~vd~l~ld 176 (270)
..++ + ..+++.+.+.++|.|++-
T Consensus 216 s~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs 248 (327)
T cd02803 216 SADDFVPGGLTLEEAIEIAKALEEAGVDALHVS 248 (327)
T ss_pred chhccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 3111 1 135667888999999864
No 88
>PRK08508 biotin synthase; Provisional
Probab=71.84 E-value=71 Score=28.19 Aligned_cols=99 Identities=12% Similarity=0.090 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccCCc-hhHHHHHHhCCCCEEEEEccCCC------------chhHHHhhhcccCCC
Q 024250 130 DWAVHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIENSRSD------------EKLLSVFREGVKYGA 196 (270)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~i~lH~c~g~~-~~~~~~l~~~~vd~l~ld~~~~~------------~~~l~~l~~~~~~~~ 196 (270)
+++.+.++.+-+..+ .+.+|.|.|.. .+.+..|.++++|.++++...+. .+.++.++..-..|-
T Consensus 75 e~~~ei~~~ik~~~p---~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 151 (279)
T PRK08508 75 EYVAEAAKAVKKEVP---GLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGL 151 (279)
T ss_pred HHHHHHHHHHHhhCC---CcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 444555554433221 24567787755 46788899999999998753211 112222221101244
Q ss_pred eeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEec
Q 024250 197 GIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVN 235 (270)
Q Consensus 197 ~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vs 235 (270)
.+.-|++-+. .|+.+++++.+..+. .++++.+-++
T Consensus 152 ~v~sg~I~Gl---GEt~ed~~~~l~~lr-~L~~~svpl~ 186 (279)
T PRK08508 152 GLCSGGIFGL---GESWEDRISFLKSLA-SLSPHSTPIN 186 (279)
T ss_pred eecceeEEec---CCCHHHHHHHHHHHH-cCCCCEEeeC
Confidence 5555555553 589999999998875 4665544433
No 89
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=71.84 E-value=31 Score=30.58 Aligned_cols=63 Identities=17% Similarity=0.317 Sum_probs=40.5
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++.+..++|+++|++|.... +...++.+.+ ++.+ ++.+- |-|+.+ +.++....++||.|
T Consensus 200 ~~~eAl~agaDiImLDNm~~---------------e~~~~av~~l--~~~~--~~~lE-aSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 200 EAEEALEAGADIIMLDNMSP---------------EELKEAVKLL--GLAG--RALLE-ASGGITLENIREYAETGVDVI 259 (280)
T ss_pred HHHHHHHcCCCEEEecCCCH---------------HHHHHHHHHh--ccCC--ceEEE-EeCCCCHHHHHHHhhcCCCEE
Confidence 35555678999999997321 2233444443 2332 34444 446664 67888999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
|+=+
T Consensus 260 S~ga 263 (280)
T COG0157 260 SVGA 263 (280)
T ss_pred EeCc
Confidence 9876
No 90
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=71.42 E-value=82 Score=28.72 Aligned_cols=146 Identities=12% Similarity=0.236 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCCEEEeccC------ccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc--CCchhHH
Q 024250 91 AIKDEVEDLEKAGINVIQIDEA------ALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY--SNFNDII 162 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP------~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~--g~~~~~~ 162 (270)
-..+.++.|.++|+++|.+-=+ ++..+.+..+ ++ + .++.+.+.++. .++.+.+-. ++.. -+
T Consensus 25 ~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~-~~----e----~i~~~~~~~~~-~~~~~ll~pg~~~~~-dl 93 (333)
T TIGR03217 25 QVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT-DL----E----YIEAAADVVKR-AKVAVLLLPGIGTVH-DL 93 (333)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCC-hH----H----HHHHHHHhCCC-CEEEEEeccCccCHH-HH
Confidence 3445567788999999988411 2221111111 11 2 22222222321 333333222 3443 35
Q ss_pred HHHHhCCCCEEEEEccCCCch----hHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 163 HSIIDMDADVITIENSRSDEK----LLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 163 ~~l~~~~vd~l~ld~~~~~~~----~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
+...++++|.+.+=+.-+..+ ..+..++ .|..+...+.++. .-+++.+.+.++.+.+ .|.+.+.+.-+.
T Consensus 94 ~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~---~G~~v~~~l~~s~---~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~ 166 (333)
T TIGR03217 94 KAAYDAGARTVRVATHCTEADVSEQHIGMARE---LGMDTVGFLMMSH---MTPPEKLAEQAKLMES-YGADCVYIVDSA 166 (333)
T ss_pred HHHHHCCCCEEEEEeccchHHHHHHHHHHHHH---cCCeEEEEEEccc---CCCHHHHHHHHHHHHh-cCCCEEEEccCC
Confidence 777889999988766433322 2233333 3556666666653 4688999998888765 588999999988
Q ss_pred CCCCCCHhHHHHHHHHHH
Q 024250 239 GLKTRKYTEVKPALSNMV 256 (270)
Q Consensus 239 gl~~~~~~~a~~kL~~l~ 256 (270)
|.. +|+...+.++.+.
T Consensus 167 G~~--~P~~v~~~v~~l~ 182 (333)
T TIGR03217 167 GAM--LPDDVRDRVRALK 182 (333)
T ss_pred CCC--CHHHHHHHHHHHH
Confidence 865 5654444444443
No 91
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.87 E-value=20 Score=32.16 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADV 172 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~ 172 (270)
+++++..++|+++||+|.-+. +...++...+ ++ ++.+-.. |+.+ +.+....++++|.
T Consensus 216 eea~eA~~aGaDiImLDnmsp---------------e~l~~av~~~----~~--~~~lEaS-GGIt~~ni~~yA~tGVD~ 273 (294)
T PRK06978 216 AQLETALAHGAQSVLLDNFTL---------------DMMREAVRVT----AG--RAVLEVS-GGVNFDTVRAFAETGVDR 273 (294)
T ss_pred HHHHHHHHcCCCEEEECCCCH---------------HHHHHHHHhh----cC--CeEEEEE-CCCCHHHHHHHHhcCCCE
Confidence 345666678999999997321 1122222221 21 2344455 5553 6788899999999
Q ss_pred EEEEc
Q 024250 173 ITIEN 177 (270)
Q Consensus 173 l~ld~ 177 (270)
||.=.
T Consensus 274 IS~ga 278 (294)
T PRK06978 274 ISIGA 278 (294)
T ss_pred EEeCc
Confidence 99875
No 92
>PRK01060 endonuclease IV; Provisional
Probab=70.66 E-value=71 Score=27.74 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=24.6
Q ss_pred eEEEee-ccCCchhHHHHHHhCCCCEEEEEc
Q 024250 148 QIHTHM-CYSNFNDIIHSIIDMDADVITIEN 177 (270)
Q Consensus 148 ~i~lH~-c~g~~~~~~~~l~~~~vd~l~ld~ 177 (270)
+++.|+ +++++.+.++.+.++++|++-+-.
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~~~G~d~vEl~~ 33 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAAEIGANAFMIFT 33 (281)
T ss_pred eEEEeeecCCCHHHHHHHHHHcCCCEEEEEC
Confidence 467775 568898999999999999998854
No 93
>PRK07695 transcriptional regulator TenI; Provisional
Probab=69.65 E-value=33 Score=28.48 Aligned_cols=60 Identities=8% Similarity=0.089 Sum_probs=36.3
Q ss_pred HHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEEEEcc
Q 024250 99 LEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 178 (270)
Q Consensus 99 l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~~ 178 (270)
+.+.|+++||+-++.++. .++.+.+.... .. +.. ...+++|- ..+.....++|++|+-..
T Consensus 23 ~~~~g~~~iqlR~k~~~~---------~~~~~~~~~l~-~~--~~~-~~~liin~-------~~~la~~~~~~gvHl~~~ 82 (201)
T PRK07695 23 QIHSEVDYIHIREREKSA---------KELYEGVESLL-KK--GVP-ASKLIIND-------RVDIALLLNIHRVQLGYR 82 (201)
T ss_pred HHhCCCCEEEEcCCCCCH---------HHHHHHHHHHH-Hh--CCC-CCeEEEEC-------HHHHHHHcCCCEEEeCcc
Confidence 568899999999998763 12223222222 21 111 13466662 236778899999999763
No 94
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=68.97 E-value=22 Score=33.27 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc-CCchh-HHHHHHh
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY-SNFND-IIHSIID 167 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~-g~~~~-~~~~l~~ 167 (270)
+.|.+.+++|.+.||+.|+|-+.+-- + .|.... ..+.++++. .+ +++.|||=. ..... .+=...+
T Consensus 156 e~yv~~akel~~~g~DSIciKDmaGl--l-----tP~~ay-elVk~iK~~---~~--~pv~lHtH~TsG~a~m~ylkAvE 222 (472)
T COG5016 156 EYYVELAKELLEMGVDSICIKDMAGL--L-----TPYEAY-ELVKAIKKE---LP--VPVELHTHATSGMAEMTYLKAVE 222 (472)
T ss_pred HHHHHHHHHHHHcCCCEEEeeccccc--C-----ChHHHH-HHHHHHHHh---cC--CeeEEecccccchHHHHHHHHHH
Confidence 56777788999999999999985432 2 222111 223334433 32 456666532 22322 2223467
Q ss_pred CCCCEEEEE
Q 024250 168 MDADVITIE 176 (270)
Q Consensus 168 ~~vd~l~ld 176 (270)
+++|.|.-=
T Consensus 223 AGvD~iDTA 231 (472)
T COG5016 223 AGVDGIDTA 231 (472)
T ss_pred hCcchhhhh
Confidence 888887544
No 95
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=68.95 E-value=58 Score=28.13 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=57.1
Q ss_pred ceEEEeeccCCch----hHHHHHHhCC--CCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHH
Q 024250 147 TQIHTHMCYSNFN----DIIHSIIDMD--ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRI 220 (270)
Q Consensus 147 ~~i~lH~c~g~~~----~~~~~l~~~~--vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i 220 (270)
+++++||..+|-. .+++.+.+.+ .+-+-+|..+ .+.++.+-+ .+-.+++-|=++ .=++++.++.+
T Consensus 128 vPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvIDH~N--~etv~~vld---~e~~vGlTvqPg----Klt~~eAveIV 198 (254)
T COG1099 128 VPVIVHTPRRNKKEATSKILDILIESGLKPSLVVIDHVN--EETVDEVLD---EEFYVGLTVQPG----KLTVEEAVEIV 198 (254)
T ss_pred CcEEEeCCCCcchhHHHHHHHHHHHcCCChhheehhccc--HHHHHHHHh---ccceEEEEecCC----cCCHHHHHHHH
Confidence 6789999988643 4556665444 4667777654 444453333 233344433333 45677777766
Q ss_pred HHHhccccCCceEecCCCCCCCCCH-hHHHHHHH
Q 024250 221 NKMLAVLETNILWVNPDCGLKTRKY-TEVKPALS 253 (270)
Q Consensus 221 ~~~~~~~~~~~l~vsp~Cgl~~~~~-~~a~~kL~ 253 (270)
++- ++++++++.|||-+...+ ..++.+|+
T Consensus 199 ~ey----~~~r~ilnSD~~s~~sd~lavprtal~ 228 (254)
T COG1099 199 REY----GAERIILNSDAGSAASDPLAVPRTALE 228 (254)
T ss_pred HHh----CcceEEEecccccccccchhhhHHHHH
Confidence 664 368999999999887544 33334443
No 96
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=68.49 E-value=88 Score=27.92 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=72.1
Q ss_pred HHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-CchhHHHHHHhCCCCEE
Q 024250 96 VEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NFNDIIHSIIDMDADVI 173 (270)
Q Consensus 96 ~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~~~~~~~l~~~~vd~l 173 (270)
+++..+.+..+ ||+.+..+.... .. +......+.+.+....++++.||.=-| ++ +.+...++++++.+
T Consensus 35 i~AAe~~~sPvIiq~~~~~~~~~~-----~~----~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~-e~i~~ai~~GftSV 104 (285)
T PRK07709 35 LAAAEEEKSPVILGVSEGAARHMT-----GF----KTVVAMVKALIEEMNITVPVAIHLDHGSSF-EKCKEAIDAGFTSV 104 (285)
T ss_pred HHHHHHHCCCEEEEcCcchhhhcC-----CH----HHHHHHHHHHHHHcCCCCcEEEECCCCCCH-HHHHHHHHcCCCEE
Confidence 44444556665 899886654311 11 222334444444332225688998554 44 44557889999999
Q ss_pred EEEccCCCc-hhHHHhhhcc----cCC--CeeeceEecCCC-------CCCCCHHHHHHHHHHHhccccCCceEecCCCC
Q 024250 174 TIENSRSDE-KLLSVFREGV----KYG--AGIGPGVYDIHS-------PRIPSTEEIADRINKMLAVLETNILWVNPDCG 239 (270)
Q Consensus 174 ~ld~~~~~~-~~l~~l~~~~----~~~--~~l~~GvVd~~~-------~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cg 239 (270)
-+|-+..++ ++++.-++.. ..| -.-=+|-|-+.. ....+|++.++-+++. + -..++++.|
T Consensus 105 M~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~T----g--vD~LAvaiG 178 (285)
T PRK07709 105 MIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEAT----G--IDCLAPALG 178 (285)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHh----C--CCEEEEeec
Confidence 999876443 4444333210 011 122344443321 1257999988777664 2 235666777
Q ss_pred CCC
Q 024250 240 LKT 242 (270)
Q Consensus 240 l~~ 242 (270)
-.|
T Consensus 179 t~H 181 (285)
T PRK07709 179 SVH 181 (285)
T ss_pred ccc
Confidence 666
No 97
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=68.18 E-value=97 Score=28.31 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccC---ccccCCCCC--------CccHHHHHHHHHHHHHHHhcCCCCCceEEEee
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDEA---ALREGLPLR--------KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM 153 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDEP---~l~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~ 153 (270)
++.+.+.+.+.++.+.++|++.|+|.-- .|...+... .+....-..+..+.++.+-+.++.+..+.+-+
T Consensus 132 I~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi 211 (353)
T cd02930 132 IEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRL 211 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Confidence 4677777888888888999999999531 111111111 11122123344444554444454344444433
Q ss_pred cc-----CCch-----hHHHHHHhCCCCEEEE
Q 024250 154 CY-----SNFN-----DIIHSIIDMDADVITI 175 (270)
Q Consensus 154 c~-----g~~~-----~~~~~l~~~~vd~l~l 175 (270)
-. |.++ .+.+.|.+.++|.+++
T Consensus 212 ~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 212 SMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 32 1121 3556777889999988
No 98
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.73 E-value=19 Score=32.05 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++++..++|+++||+|... ++. ...+++.+ +...+ +-.- |+.+ +.++.+.++++|+|
T Consensus 201 ea~eA~~~gaD~I~LD~~~-----------~e~-l~~~v~~~-------~~~i~--leAs-GGIt~~ni~~~a~tGvD~I 258 (277)
T PRK05742 201 ELRQALAAGADIVMLDELS-----------LDD-MREAVRLT-------AGRAK--LEAS-GGINESTLRVIAETGVDYI 258 (277)
T ss_pred HHHHHHHcCCCEEEECCCC-----------HHH-HHHHHHHh-------CCCCc--EEEE-CCCCHHHHHHHHHcCCCEE
Confidence 4555567899999998421 111 12222211 11122 2223 5554 67889999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
++=.
T Consensus 259 svg~ 262 (277)
T PRK05742 259 SIGA 262 (277)
T ss_pred EECh
Confidence 9875
No 99
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=67.62 E-value=86 Score=27.50 Aligned_cols=149 Identities=11% Similarity=0.024 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhC--
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDM-- 168 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~-- 168 (270)
.+.+.++++.+.|+++|=+-=- .. ..+..+...++++.+.+..+ .++.+-++ +. ++++.-++.
T Consensus 26 ~i~~~A~~~~~~GAdiIDVg~~-------~~---~~eE~~r~~~~v~~l~~~~~--~plsIDT~--~~-~v~eaaL~~~~ 90 (261)
T PRK07535 26 FIQKLALKQAEAGADYLDVNAG-------TA---VEEEPETMEWLVETVQEVVD--VPLCIDSP--NP-AAIEAGLKVAK 90 (261)
T ss_pred HHHHHHHHHHHCCCCEEEECCC-------CC---chhHHHHHHHHHHHHHHhCC--CCEEEeCC--CH-HHHHHHHHhCC
Confidence 4555677788999999766522 11 11223445555555433222 44555554 23 355555555
Q ss_pred CCCEEEEEccC-C--CchhHHHhhhcccCCCeeeceEecCCCCCCCCHH----HHHHHHHHHhcc-ccCCceEecCCCCC
Q 024250 169 DADVITIENSR-S--DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTE----EIADRINKMLAV-LETNILWVNPDCGL 240 (270)
Q Consensus 169 ~vd~l~ld~~~-~--~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e----~v~~~i~~~~~~-~~~~~l~vsp~Cgl 240 (270)
+.+.|. |... . ..+.++.++++ +-.+++=..+.+.. -.+.+ ...+.+..+.+. ++++++++.|.-|+
T Consensus 91 G~~iIN-sIs~~~~~~~~~~~l~~~~---g~~vv~m~~~~~g~-P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~ 165 (261)
T PRK07535 91 GPPLIN-SVSAEGEKLEVVLPLVKKY---NAPVVALTMDDTGI-PKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLP 165 (261)
T ss_pred CCCEEE-eCCCCCccCHHHHHHHHHh---CCCEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCc
Confidence 555432 2111 1 22344555553 32233222332221 12333 334444444432 34589999999996
Q ss_pred CCCCHhHHHHHHHHHHHHH
Q 024250 241 KTRKYTEVKPALSNMVAAA 259 (270)
Q Consensus 241 ~~~~~~~a~~kL~~l~~~a 259 (270)
.+.+.....+-|+.+....
T Consensus 166 ~~~~~~~~~~~l~~i~~l~ 184 (261)
T PRK07535 166 LSAAQDAGPEVLETIRRIK 184 (261)
T ss_pred ccCChHHHHHHHHHHHHHH
Confidence 5555665556666665443
No 100
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.11 E-value=99 Score=28.03 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEeccCc---cccCCCCC--------CccHHHHHHHHHHHHHHHhcCCCCCceEEE
Q 024250 83 ETCYQIALAIKDEVEDLEKAGINVIQIDEAA---LREGLPLR--------KSEHAFYLDWAVHSFRITNCGVQDTTQIHT 151 (270)
Q Consensus 83 ~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~---l~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 151 (270)
+-+..+.+.+.+.++.+.++|++.|+|.--- +...+... .+....-..+..+.++.+-+.+..+..+.+
T Consensus 142 ~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~v 221 (338)
T cd04733 142 EEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGI 221 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 3457777788888888899999999997431 11111111 112222344555555555555544455565
Q ss_pred eecc-----CCch-----hHHHHHHhCCCCEEEE
Q 024250 152 HMCY-----SNFN-----DIIHSIIDMDADVITI 175 (270)
Q Consensus 152 H~c~-----g~~~-----~~~~~l~~~~vd~l~l 175 (270)
-+.. +.++ .+.+.|.+.++|.|++
T Consensus 222 ris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev 255 (338)
T cd04733 222 KLNSADFQRGGFTEEDALEVVEALEEAGVDLVEL 255 (338)
T ss_pred EEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 5431 1122 4566777888888875
No 101
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=66.38 E-value=91 Score=27.33 Aligned_cols=151 Identities=16% Similarity=0.159 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-Cc-hhHHHHHHhC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NF-NDIIHSIIDM 168 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~-~~~~~~l~~~ 168 (270)
...+.++.|.++|+++|.+==|.....-.. ... .+.+ .+.++++.+....+.++..+ |.. .. .+-+....+.
T Consensus 21 ~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~--~~~-~~~~--~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~ 94 (266)
T cd07944 21 FVKAIYRALAAAGIDYVEIGYRSSPEKEFK--GKS-AFCD--DEFLRRLLGDSKGNTKIAVM-VDYGNDDIDLLEPASGS 94 (266)
T ss_pred HHHHHHHHHHHCCCCEEEeecCCCCccccC--CCc-cCCC--HHHHHHHHhhhccCCEEEEE-ECCCCCCHHHHHHHhcC
Confidence 344556778889999988876654321000 000 0000 11233332222112344443 332 21 1334556788
Q ss_pred CCCEEEEEccCCCchh----HHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCC
Q 024250 169 DADVITIENSRSDEKL----LSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRK 244 (270)
Q Consensus 169 ~vd~l~ld~~~~~~~~----l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~ 244 (270)
+++.+.+-+..+..+. .+..++ .|..+.+++.++.. -+++.+.+.++++.+ .|.+++.+.-..|.. +
T Consensus 95 gv~~iri~~~~~~~~~~~~~i~~ak~---~G~~v~~~~~~a~~---~~~~~~~~~~~~~~~-~g~~~i~l~DT~G~~--~ 165 (266)
T cd07944 95 VVDMIRVAFHKHEFDEALPLIKAIKE---KGYEVFFNLMAISG---YSDEELLELLELVNE-IKPDVFYIVDSFGSM--Y 165 (266)
T ss_pred CcCEEEEecccccHHHHHHHHHHHHH---CCCeEEEEEEeecC---CCHHHHHHHHHHHHh-CCCCEEEEecCCCCC--C
Confidence 9999888765444332 222232 36678888888765 578899888888865 488999998888855 5
Q ss_pred HhHHHHHHHHHH
Q 024250 245 YTEVKPALSNMV 256 (270)
Q Consensus 245 ~~~a~~kL~~l~ 256 (270)
|....+.++.+.
T Consensus 166 P~~v~~lv~~l~ 177 (266)
T cd07944 166 PEDIKRIISLLR 177 (266)
T ss_pred HHHHHHHHHHHH
Confidence 665555554443
No 102
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.16 E-value=27 Score=31.10 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=37.5
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++.+..++|+++||+|.-+.. + ...+++.+ ++. ..+-.. |+.+ +.+....++++|.|
T Consensus 205 e~~ea~~~gaDiImLDn~s~e-----------~-l~~av~~~-------~~~--~~leaS-GgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 205 QIEPVLAAGVDTIMLDNFSLD-----------D-LREGVELV-------DGR--AIVEAS-GNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred HHHHHHhcCCCEEEECCCCHH-----------H-HHHHHHHh-------CCC--eEEEEE-CCCCHHHHHHHHhcCCCEE
Confidence 455556789999999973221 1 22223322 111 234445 5553 57788899999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
+.=.
T Consensus 263 s~ga 266 (281)
T PRK06543 263 SVGA 266 (281)
T ss_pred EeCc
Confidence 9875
No 103
>PRK10812 putative DNAse; Provisional
Probab=66.13 E-value=92 Score=27.29 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=49.0
Q ss_pred ceEEEeeccCCchhHHHHHHhCCCC---EEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHH
Q 024250 147 TQIHTHMCYSNFNDIIHSIIDMDAD---VITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKM 223 (270)
Q Consensus 147 ~~i~lH~c~g~~~~~~~~l~~~~vd---~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~ 223 (270)
.++.+|+- +...+.++.|.+.+++ ++ +=...++.+.++.+.+ .|-.++++-+-+. .+ .+.++++
T Consensus 125 ~Pv~iH~r-~a~~~~l~iL~~~~~~~~~~v-~H~fsG~~~~a~~~~~---~G~~is~~g~~t~----~~----~~~~~~~ 191 (265)
T PRK10812 125 KPVIVHTR-DARADTLAILREEKVTDCGGV-LHCFTEDRETAGKLLD---LGFYISFSGIVTF----RN----AEQLRDA 191 (265)
T ss_pred CCeEEEee-CchHHHHHHHHhhcCCCCCEE-EEeecCCHHHHHHHHH---CCCEEEECeeeec----Cc----cHHHHHH
Confidence 56899954 5667788888765442 33 2112334444455544 2445665532221 11 2455666
Q ss_pred hccccCCceEecCCCCCC
Q 024250 224 LAVLETNILWVNPDCGLK 241 (270)
Q Consensus 224 ~~~~~~~~l~vsp~Cgl~ 241 (270)
++.+|.+++++.+||.+.
T Consensus 192 ~~~ipldrlLlETD~P~~ 209 (265)
T PRK10812 192 ARYVPLDRLLVETDSPYL 209 (265)
T ss_pred HHhCChhhEEEecCCCCC
Confidence 777888999999999875
No 104
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=65.71 E-value=32 Score=30.72 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++++..++|+++||+|.-. +++ ++.+++.++. .. ..+.+-.. |+.+ +.+..+.++++|.|
T Consensus 201 qa~ea~~agaDiI~LDn~~-----------~e~-l~~av~~~~~----~~--~~~~leaS-GGI~~~ni~~yA~tGvD~I 261 (284)
T PRK06096 201 EAIAALRAQPDVLQLDKFS-----------PQQ-ATEIAQIAPS----LA--PHCTLSLA-GGINLNTLKNYADCGIRLF 261 (284)
T ss_pred HHHHHHHcCCCEEEECCCC-----------HHH-HHHHHHHhhc----cC--CCeEEEEE-CCCCHHHHHHHHhcCCCEE
Confidence 4566677899999998622 111 2333333321 11 12345555 5553 67888999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
+.=.
T Consensus 262 s~ga 265 (284)
T PRK06096 262 ITSA 265 (284)
T ss_pred EECc
Confidence 8765
No 105
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=64.82 E-value=35 Score=30.29 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++++..++|+++||+|.- ++++ ...+++.++ ... ..+.+-.. |+.+ +.++.+.++++|.|
T Consensus 200 ea~ea~~~GaDiI~lDn~-----------~~e~-l~~~v~~l~----~~~--~~~~leas-GGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 200 QALTVLQASPDILQLDKF-----------TPQQ-LHHLHERLK----FFD--HIPTLAAA-GGINPENIADYIEAGIDLF 260 (277)
T ss_pred HHHHHHHcCcCEEEECCC-----------CHHH-HHHHHHHHh----ccC--CCEEEEEE-CCCCHHHHHHHHhcCCCEE
Confidence 466667889999999941 1111 222333332 111 23345566 5553 57788999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
+.=.
T Consensus 261 s~ga 264 (277)
T TIGR01334 261 ITSA 264 (277)
T ss_pred EeCc
Confidence 8765
No 106
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=64.20 E-value=89 Score=26.46 Aligned_cols=136 Identities=18% Similarity=0.263 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch---hHHHHHHhC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDM 168 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~---~~~~~l~~~ 168 (270)
..+.++.|.++|++.|.+=-|.... +. .+.+....+.. .. ..+..+ |..+.. ..++.+.++
T Consensus 16 k~~i~~~L~~~Gv~~iEvg~~~~~~-------~~---~~~v~~~~~~~-~~----~~~~~~-~~~~~~~i~~~~~~~~~~ 79 (237)
T PF00682_consen 16 KLEIAKALDEAGVDYIEVGFPFASE-------DD---FEQVRRLREAL-PN----ARLQAL-CRANEEDIERAVEAAKEA 79 (237)
T ss_dssp HHHHHHHHHHHTTSEEEEEHCTSSH-------HH---HHHHHHHHHHH-HS----SEEEEE-EESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEcccccCH-------HH---HHHhhhhhhhh-cc----ccccee-eeehHHHHHHHHHhhHhc
Confidence 3445667888999999888443331 11 22222222222 22 223333 222222 234556679
Q ss_pred CCCEEEEEccCCC-----------chhHHHhhhc----ccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceE
Q 024250 169 DADVITIENSRSD-----------EKLLSVFREG----VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILW 233 (270)
Q Consensus 169 ~vd~l~ld~~~~~-----------~~~l~~l~~~----~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~ 233 (270)
+++.+.+-...++ .+.++.+.+. -..+..+.+|..+.. ..+++.+.+.++++.+. +.+.+.
T Consensus 80 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~-g~~~i~ 155 (237)
T PF00682_consen 80 GIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS---RTDPEELLELAEALAEA-GADIIY 155 (237)
T ss_dssp TSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG---GSSHHHHHHHHHHHHHH-T-SEEE
T ss_pred cCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc---cccHHHHHHHHHHHHHc-CCeEEE
Confidence 9999998876543 1112222111 023667777776664 34677888777777654 778888
Q ss_pred ecCCCCCCCCCHhHHH
Q 024250 234 VNPDCGLKTRKYTEVK 249 (270)
Q Consensus 234 vsp~Cgl~~~~~~~a~ 249 (270)
+.-+-|.. +|....
T Consensus 156 l~Dt~G~~--~P~~v~ 169 (237)
T PF00682_consen 156 LADTVGIM--TPEDVA 169 (237)
T ss_dssp EEETTS-S---HHHHH
T ss_pred eeCccCCc--CHHHHH
Confidence 87666655 555333
No 107
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=63.91 E-value=43 Score=31.92 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
.|.+.++++.++|++.|.|-+.+=.. .|... ...+.++++. ++.++.++.|.-+|--....=...++++
T Consensus 155 ~~~~~a~~l~~~Gad~I~i~Dt~G~l-------~P~~v-~~lv~alk~~---~~~pi~~H~Hnt~GlA~AN~laAieaGa 223 (448)
T PRK12331 155 YFVKLAKEMQEMGADSICIKDMAGIL-------TPYVA-YELVKRIKEA---VTVPLEVHTHATSGIAEMTYLKAIEAGA 223 (448)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCC-------CHHHH-HHHHHHHHHh---cCCeEEEEecCCCCcHHHHHHHHHHcCC
Confidence 45566777888999999998864331 23222 2223333333 3212334444344533223334468889
Q ss_pred CEEEEEc
Q 024250 171 DVITIEN 177 (270)
Q Consensus 171 d~l~ld~ 177 (270)
|.++.=.
T Consensus 224 d~vD~sv 230 (448)
T PRK12331 224 DIIDTAI 230 (448)
T ss_pred CEEEeec
Confidence 9876654
No 108
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=63.57 E-value=1.2e+02 Score=30.89 Aligned_cols=92 Identities=12% Similarity=0.177 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccC---ccccCCCCC--------CccHHHHHHHHHHHHHHHhcCCCCCceEEEee
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDEA---ALREGLPLR--------KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM 153 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDEP---~l~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~ 153 (270)
++.+.+.+.+.++.+.++|++.|+|.-- .+...+... .+..+.-..+..+.++.+-+.++.+.++.+-+
T Consensus 546 I~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri 625 (765)
T PRK08255 546 MDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRI 625 (765)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEE
Confidence 4667777777788888999999999844 111111110 11222112333334443333343334555555
Q ss_pred ccCCc-------h---hHHHHHHhCCCCEEEEE
Q 024250 154 CYSNF-------N---DIIHSIIDMDADVITIE 176 (270)
Q Consensus 154 c~g~~-------~---~~~~~l~~~~vd~l~ld 176 (270)
.-.++ . .+.+.|.+.++|.|++-
T Consensus 626 ~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 626 SAHDWVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred ccccccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 42111 1 35567778899999885
No 109
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=62.82 E-value=95 Score=26.31 Aligned_cols=140 Identities=15% Similarity=0.101 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCCEE--EeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc-C------CchhHHH-
Q 024250 94 DEVEDLEKAGINVI--QIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY-S------NFNDIIH- 163 (270)
Q Consensus 94 ~~~~~l~~~G~~~I--QiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~-g------~~~~~~~- 163 (270)
.++++..+.|++.| |+..-.+. .....+.+.+..+. ..+. ++++++.++. | ...+.+.
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~---------~~~~~~~i~~v~~~-~~~~--g~~~iie~~~~g~~~~~~~~~~~i~~ 147 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEE---------EREMLEELARVAAE-AHKY--GLPLIAWMYPRGPAVKNEKDPDLIAY 147 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCch---------HHHHHHHHHHHHHH-HHHc--CCCEEEEEeccCCcccCccCHHHHHH
Confidence 34667778999975 88754322 11222333333222 2222 2445555543 1 0012222
Q ss_pred ---HHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCC
Q 024250 164 ---SIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240 (270)
Q Consensus 164 ---~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl 240 (270)
...++++|.+.+.+.. +.+.++.+.+..+ +.++=.-.+...|+++..+.++++++ .|.+.+.+..+--
T Consensus 148 ~~~~a~~~GaD~Ik~~~~~-~~~~~~~i~~~~~------~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~i~- 218 (235)
T cd00958 148 AARIGAELGADIVKTKYTG-DAESFKEVVEGCP------VPVVIAGGPKKDSEEEFLKMVYDAME-AGAAGVAVGRNIF- 218 (235)
T ss_pred HHHHHHHHCCCEEEecCCC-CHHHHHHHHhcCC------CCEEEeCCCCCCCHHHHHHHHHHHHH-cCCcEEEechhhh-
Confidence 3567899999997544 4455555554311 11222123334588888888888875 4666665554433
Q ss_pred CCCCHhHHHHHHHH
Q 024250 241 KTRKYTEVKPALSN 254 (270)
Q Consensus 241 ~~~~~~~a~~kL~~ 254 (270)
..-+|..+.++++.
T Consensus 219 ~~~dp~~~~~~~~~ 232 (235)
T cd00958 219 QRPDPVAMLRAISA 232 (235)
T ss_pred cCCCHHHHHHHHHH
Confidence 22245544444443
No 110
>PLN02389 biotin synthase
Probab=62.44 E-value=1.3e+02 Score=27.89 Aligned_cols=139 Identities=7% Similarity=0.009 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCc-hhHHHHHHhCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMD 169 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~-~~~~~~l~~~~ 169 (270)
.+.+.++++.+.|++-+.+-. + .-... +.....+.+.+.++.+-+ . +. -++++.|.. .+.+..|.+++
T Consensus 120 eIl~~a~~~~~~G~~~~~ivt---s-~rg~~--~e~~~~e~i~eiir~ik~-~--~l--~i~~s~G~l~~E~l~~LkeAG 188 (379)
T PLN02389 120 DVLEAAKRAKEAGSTRFCMGA---A-WRDTV--GRKTNFNQILEYVKEIRG-M--GM--EVCCTLGMLEKEQAAQLKEAG 188 (379)
T ss_pred HHHHHHHHHHHcCCCEEEEEe---c-ccCCC--CChhHHHHHHHHHHHHhc-C--Cc--EEEECCCCCCHHHHHHHHHcC
Confidence 444456667778998655421 0 00011 111124556666666532 2 22 345666654 36888999999
Q ss_pred CCEEEEEccCCC-----------c-hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhcc------ccCCc
Q 024250 170 ADVITIENSRSD-----------E-KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAV------LETNI 231 (270)
Q Consensus 170 vd~l~ld~~~~~-----------~-~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~------~~~~~ 231 (270)
+|.+.+.+...+ . +-++.++.....|-.+..|+|=+. -|+.++.++.+..+.+. ++-..
T Consensus 189 ld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl---gEt~edrv~~l~~Lr~L~~~~~~v~l~~ 265 (379)
T PLN02389 189 LTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL---GEAEEDRVGLLHTLATLPEHPESVPINA 265 (379)
T ss_pred CCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC---CCCHHHHHHHHHHHHhcccCCcEEeccc
Confidence 999987764211 1 112222221123556777777775 37777777777655332 11123
Q ss_pred eEecCCCCCCCC
Q 024250 232 LWVNPDCGLKTR 243 (270)
Q Consensus 232 l~vsp~Cgl~~~ 243 (270)
+.--|+.-|...
T Consensus 266 l~P~~GTpL~~~ 277 (379)
T PLN02389 266 LVAVKGTPLEDQ 277 (379)
T ss_pred ceecCCCcCCCC
Confidence 334456666543
No 111
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=62.16 E-value=53 Score=29.11 Aligned_cols=78 Identities=17% Similarity=0.049 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHH---HHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDII---HSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~---~~l~ 166 (270)
+.++++++.+.+.|++-|.+-== .+....++ .++ -.+.++.+.+...+.++++.|++. +..+.+ ....
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~Gs-tGE~~~Ls---~eE----r~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~ 91 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAGG-TGEFFSLT---PDE----YAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAE 91 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEECcC-CcCcccCC---HHH----HHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHH
Confidence 46777788888999997655320 11111111 111 222333333333334667888885 666444 4557
Q ss_pred hCCCCEEEEE
Q 024250 167 DMDADVITIE 176 (270)
Q Consensus 167 ~~~vd~l~ld 176 (270)
++++|++.+=
T Consensus 92 ~~Gad~v~~~ 101 (289)
T cd00951 92 KAGADGILLL 101 (289)
T ss_pred HhCCCEEEEC
Confidence 7899998774
No 112
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.15 E-value=57 Score=27.79 Aligned_cols=81 Identities=9% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhH--HHHHHhCCCCE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDI--IHSIIDMDADV 172 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~--~~~l~~~~vd~ 172 (270)
.++.+.+.|++++|+-|-..+.. ..... .+.++++.+..+ .++.+ . |..++. ...++++++|.
T Consensus 37 ~a~~~~~~G~~~l~i~dl~~~~~--~~~~~--------~~~i~~i~~~~~--~~l~v--~-GGi~~~~~~~~~~~~Ga~~ 101 (241)
T PRK13585 37 VAKRWVDAGAETLHLVDLDGAFE--GERKN--------AEAIEKIIEAVG--VPVQL--G-GGIRSAEDAASLLDLGVDR 101 (241)
T ss_pred HHHHHHHcCCCEEEEEechhhhc--CCccc--------HHHHHHHHHHcC--CcEEE--c-CCcCCHHHHHHHHHcCCCE
Confidence 34445578999999988554321 00001 234444444332 33444 4 445433 67788999999
Q ss_pred EEEEccC-CCchhHHHhhh
Q 024250 173 ITIENSR-SDEKLLSVFRE 190 (270)
Q Consensus 173 l~ld~~~-~~~~~l~~l~~ 190 (270)
+.+.... .+.+.+..+.+
T Consensus 102 v~iGs~~~~~~~~~~~i~~ 120 (241)
T PRK13585 102 VILGTAAVENPEIVRELSE 120 (241)
T ss_pred EEEChHHhhChHHHHHHHH
Confidence 9998744 23344444444
No 113
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=61.55 E-value=1.1e+02 Score=26.61 Aligned_cols=138 Identities=15% Similarity=0.289 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCCEEEeccC------ccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceE--EEeeccCCchhHH
Q 024250 91 AIKDEVEDLEKAGINVIQIDEA------ALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQI--HTHMCYSNFNDII 162 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP------~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~lH~c~g~~~~~~ 162 (270)
...+.++.|.++|++.|.+==| +..... . ..++. +.++++.+..+ +.++ .++.++++..+ +
T Consensus 23 ~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~-~-~~~~~-------e~i~~~~~~~~-~~~~~~~~~~~~~~~~~-i 91 (263)
T cd07943 23 QVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGF-A-AHTDE-------EYLEAAAEALK-QAKLGVLLLPGIGTVDD-L 91 (263)
T ss_pred HHHHHHHHHHHcCCCEEEeecCCCCCCcccccCC-C-CCChH-------HHHHHHHHhcc-CCEEEEEecCCccCHHH-H
Confidence 3345567788899999888522 111111 1 11211 12222222222 1222 22233556544 5
Q ss_pred HHHHhCCCCEEEEEccCCCchh----HHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 163 HSIIDMDADVITIENSRSDEKL----LSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 163 ~~l~~~~vd~l~ld~~~~~~~~----l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
+...+.++|.+.+-+..++.+. .+..++ .|..+...+.++. .-+++.+.+.++++.+ .|.+.+.+.-.-
T Consensus 92 ~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~---~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~-~G~d~i~l~DT~ 164 (263)
T cd07943 92 KMAADLGVDVVRVATHCTEADVSEQHIGAARK---LGMDVVGFLMMSH---MASPEELAEQAKLMES-YGADCVYVTDSA 164 (263)
T ss_pred HHHHHcCCCEEEEEechhhHHHHHHHHHHHHH---CCCeEEEEEEecc---CCCHHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 7778899999998765443322 222232 3666777776653 3578889888888764 578888888777
Q ss_pred CCCCCCHhHH
Q 024250 239 GLKTRKYTEV 248 (270)
Q Consensus 239 gl~~~~~~~a 248 (270)
|.. +|...
T Consensus 165 G~~--~P~~v 172 (263)
T cd07943 165 GAM--LPDDV 172 (263)
T ss_pred CCc--CHHHH
Confidence 754 56533
No 114
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=60.80 E-value=54 Score=31.47 Aligned_cols=77 Identities=13% Similarity=0.056 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCC
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMD 169 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~ 169 (270)
+.|.+.++++.++|++.|.|-+.+=.. .|... ...+.++++. .+-++.++.|.-+|--....=...+.+
T Consensus 153 e~~~~~a~~l~~~Gad~I~i~Dt~G~l-------~P~~v-~~Lv~~lk~~---~~vpI~~H~Hnt~GlA~AN~laAieaG 221 (467)
T PRK14041 153 EYYLEFARELVDMGVDSICIKDMAGLL-------TPKRA-YELVKALKKK---FGVPVEVHSHCTTGLASLAYLAAVEAG 221 (467)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccCCc-------CHHHH-HHHHHHHHHh---cCCceEEEecCCCCcHHHHHHHHHHhC
Confidence 345666777888999999998864332 23222 2223333333 321233444434443322233446888
Q ss_pred CCEEEEEc
Q 024250 170 ADVITIEN 177 (270)
Q Consensus 170 vd~l~ld~ 177 (270)
+|.++.=.
T Consensus 222 ad~vD~sv 229 (467)
T PRK14041 222 ADMFDTAI 229 (467)
T ss_pred CCEEEeec
Confidence 99866554
No 115
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=60.62 E-value=1.4e+02 Score=27.59 Aligned_cols=94 Identities=9% Similarity=0.034 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh---HHHHHHh
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIID 167 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~---~~~~l~~ 167 (270)
.+.+.+.++...|++.|--||..-.... . .+++-.+.+.++++++.+.-.+.+.....+. ++..+ ..+...+
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~~~--~--p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit-a~~~em~~ra~~a~~ 216 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQPF--A--PFEERVKACQEAVAEANAETGGRTLYAPNVT-GPPTQLLERARFAKE 216 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCccC--C--CHHHHHHHHHHHHHHHHhhcCCcceEEEecC-CCHHHHHHHHHHHHH
Confidence 4455566777889999999997543211 1 2233355666777776543322233344444 44443 4556788
Q ss_pred CCCCEEEEEccCCCchhHHHhh
Q 024250 168 MDADVITIENSRSDEKLLSVFR 189 (270)
Q Consensus 168 ~~vd~l~ld~~~~~~~~l~~l~ 189 (270)
.+.+++-++........+..+.
T Consensus 217 ~Ga~~vMv~~~~~G~~~~~~l~ 238 (364)
T cd08210 217 AGAGGVLIAPGLTGLDTFRELA 238 (364)
T ss_pred cCCCEEEeecccchHHHHHHHH
Confidence 9999999998654443344443
No 116
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=60.37 E-value=47 Score=29.96 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHHHH------cCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHh
Q 024250 95 EVEDLEK------AGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIID 167 (270)
Q Consensus 95 ~~~~l~~------~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~ 167 (270)
++.+..+ +|+++||+|.--++..- . ..++ +...++... +++.. .+-.. |+.+ +.+....+
T Consensus 215 ea~ea~~~~~~~~agaDiImLDnm~~~~~~-~-~~~~----e~l~~av~~----~~~~~--~lEaS-GGIt~~ni~~yA~ 281 (308)
T PLN02716 215 EVKEVLEYLSDTKTSLTRVMLDNMVVPLEN-G-DVDV----SMLKEAVEL----INGRF--ETEAS-GNVTLDTVHKIGQ 281 (308)
T ss_pred HHHHHHHhcccccCCCCEEEeCCCcccccc-c-CCCH----HHHHHHHHh----hCCCc--eEEEE-CCCCHHHHHHHHH
Confidence 4555667 89999999986433110 0 0022 222233322 22112 24445 5553 67788999
Q ss_pred CCCCEEEEEc
Q 024250 168 MDADVITIEN 177 (270)
Q Consensus 168 ~~vd~l~ld~ 177 (270)
++||.||+=.
T Consensus 282 tGVD~Is~Ga 291 (308)
T PLN02716 282 TGVTYISSGA 291 (308)
T ss_pred cCCCEEEeCc
Confidence 9999999875
No 117
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.22 E-value=1.6e+02 Score=28.04 Aligned_cols=167 Identities=13% Similarity=0.152 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccc-cCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-C-chhHHHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALR-EGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-N-FNDIIHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~-~~~~~~~l~ 166 (270)
+.+..+++.|++.|++-|.|--=-.+ ++.+..... ....+.++.+.+ +++..++-+|+... + ..++++.+.
T Consensus 176 e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~-----~~l~~Ll~~l~~-I~G~~riR~~~~~P~~~~d~lI~~~~ 249 (437)
T COG0621 176 EDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGK-----PNLADLLRELSK-IPGIERIRFGSSHPLEFTDDLIEAIA 249 (437)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCc-----cCHHHHHHHHhc-CCCceEEEEecCCchhcCHHHHHHHh
Confidence 35556788999999987655322111 112221000 112345555544 55445677776642 1 236778888
Q ss_pred hCC--CCEEEEEccCCCchhHHHh----------------hhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhcccc
Q 024250 167 DMD--ADVITIENSRSDEKLLSVF----------------REGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 228 (270)
Q Consensus 167 ~~~--vd~l~ld~~~~~~~~l~~l----------------~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~ 228 (270)
+.+ +..||+.+-+++...|+.. +... .+-.+.--+|=+... ||-|+-.+.++-+ +.++
T Consensus 250 ~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~-Pd~~i~tDiIVGFPg--ETeedFe~tl~lv-~e~~ 325 (437)
T COG0621 250 ETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAAR-PDIAISTDIIVGFPG--ETEEDFEETLDLV-EEVR 325 (437)
T ss_pred cCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhC-CCceEeccEEEECCC--CCHHHHHHHHHHH-HHhC
Confidence 875 4778888765443333332 2211 122233333333222 4444444443333 3344
Q ss_pred CCceEecC---CCCCCC------CCHhHHHHHHHHHHHHHHHHHHHH
Q 024250 229 TNILWVNP---DCGLKT------RKYTEVKPALSNMVAAAKLLRTQL 266 (270)
Q Consensus 229 ~~~l~vsp---~Cgl~~------~~~~~a~~kL~~l~~~a~~~~~~~ 266 (270)
.+++.+.+ ==|-.. .+.+...+-++.|.+..+....+.
T Consensus 326 fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~ 372 (437)
T COG0621 326 FDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEF 372 (437)
T ss_pred CCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665433 222211 355777777888888887666554
No 118
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=59.88 E-value=68 Score=28.46 Aligned_cols=79 Identities=10% Similarity=0.161 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcC-CCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHH---HHH
Q 024250 90 LAIKDEVEDLEKAG-INVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDII---HSI 165 (270)
Q Consensus 90 ~~~~~~~~~l~~~G-~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~---~~l 165 (270)
+.++++++.+.+.| ++-|.+-=- .+....+ +.++..+ .++.+.+..++.++++.|+...+..+.+ ...
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~Gs-tGE~~~L---t~eEr~~----~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGS-TGENFML---STEEKKE----IFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCc-ccccccC---CHHHHHH----HHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHH
Confidence 47778888899999 987665410 0001111 1122122 2222222223345677776544555433 445
Q ss_pred HhCCCCEEEEE
Q 024250 166 IDMDADVITIE 176 (270)
Q Consensus 166 ~~~~vd~l~ld 176 (270)
.++++|++.+=
T Consensus 93 ~~~Gad~v~v~ 103 (290)
T TIGR00683 93 TELGYDCLSAV 103 (290)
T ss_pred HHhCCCEEEEe
Confidence 77899998884
No 119
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=59.04 E-value=1.5e+02 Score=27.45 Aligned_cols=92 Identities=8% Similarity=0.072 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccC----ccccCCCCC--------CccHHHHHHHHHHHHHHHhcCCCCCceEEEe
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDEA----ALREGLPLR--------KSEHAFYLDWAVHSFRITNCGVQDTTQIHTH 152 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDEP----~l~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH 152 (270)
++.+.+.+.+..+...++|.|.|+|.-- .|...++.. .+.++.-..+..+.++.+-+.++.+..+++-
T Consensus 145 I~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vr 224 (382)
T cd02931 145 VETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLR 224 (382)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEE
Confidence 5677788888888888999999999852 222223211 1122222344455555554445444556666
Q ss_pred eccC---------------------Cch---hHHHHHHhCCCCEEEEE
Q 024250 153 MCYS---------------------NFN---DIIHSIIDMDADVITIE 176 (270)
Q Consensus 153 ~c~g---------------------~~~---~~~~~l~~~~vd~l~ld 176 (270)
+... +.. .+++.|.+.++|.+++-
T Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 225 YSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred EechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 5420 011 35566677888998875
No 120
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=58.98 E-value=53 Score=32.50 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee--ccCCchhHHHHHHh
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM--CYSNFNDIIHSIID 167 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~--c~g~~~~~~~~l~~ 167 (270)
+.|.+.++++.++|++.|.|-+.+=.. .|.. +.+.++.+-+.++ .++.+|+ -.|.-....-...+
T Consensus 154 e~~~~~ak~l~~~Gad~I~IkDtaG~l-------~P~~----v~~lv~alk~~~~--ipi~~H~Hnt~Gla~an~laAie 220 (596)
T PRK14042 154 DNFLELGKKLAEMGCDSIAIKDMAGLL-------TPTV----TVELYAGLKQATG--LPVHLHSHSTSGLASICHYEAVL 220 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccCC-------CHHH----HHHHHHHHHhhcC--CEEEEEeCCCCCcHHHHHHHHHH
Confidence 355666777888999999998865331 2322 2223333222232 3455554 33433223334578
Q ss_pred CCCCEEEEEc
Q 024250 168 MDADVITIEN 177 (270)
Q Consensus 168 ~~vd~l~ld~ 177 (270)
+++|.+..-.
T Consensus 221 aGad~iD~ai 230 (596)
T PRK14042 221 AGCNHIDTAI 230 (596)
T ss_pred hCCCEEEecc
Confidence 8999876665
No 121
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=58.51 E-value=1.5e+02 Score=27.13 Aligned_cols=153 Identities=13% Similarity=0.137 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCC--EEEeccC-ccccCCCC-CCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc
Q 024250 80 PRHETCYQIALAIKDEVEDLEKAGIN--VIQIDEA-ALREGLPL-RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY 155 (270)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~l~~~G~~--~IQiDEP-~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~ 155 (270)
+..++..++-.-....+++|.++|+. +|||=.= ......+. ...+++.+.......++.+-+ .....+|+||+-.
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~-~~p~~kV~lH~~~ 178 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVRE-VDPNIKVMLHLAN 178 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHT-HSSTSEEEEEES-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHh-cCCCCcEEEEECC
Confidence 56788888888888889999999985 7998433 22222221 123455444444434433322 2224678999765
Q ss_pred C-Cc---hhHHHHHHh--CCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccC
Q 024250 156 S-NF---NDIIHSIID--MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET 229 (270)
Q Consensus 156 g-~~---~~~~~~l~~--~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~ 229 (270)
| +. .-.++.|.+ .++|.|++-+..- |-.+.+.+...+..+.+..+.
T Consensus 179 ~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~----------------------------w~~~l~~l~~~l~~l~~ry~K 230 (332)
T PF07745_consen 179 GGDNDLYRWFFDNLKAAGVDFDVIGLSYYPF----------------------------WHGTLEDLKNNLNDLASRYGK 230 (332)
T ss_dssp TTSHHHHHHHHHHHHHTTGG-SEEEEEE-ST----------------------------TST-HHHHHHHHHHHHHHHT-
T ss_pred CCchHHHHHHHHHHHhcCCCcceEEEecCCC----------------------------CcchHHHHHHHHHHHHHHhCC
Confidence 4 32 235666655 4567788776431 111444455555555444454
Q ss_pred CceEecCCCCCC--------------------CCCHhHHHHHHHHHHHHHHH
Q 024250 230 NILWVNPDCGLK--------------------TRKYTEVKPALSNMVAAAKL 261 (270)
Q Consensus 230 ~~l~vsp~Cgl~--------------------~~~~~~a~~kL~~l~~~a~~ 261 (270)
+.+++-+++... +.|++-+.+=|+.+.++.+.
T Consensus 231 ~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~ 282 (332)
T PF07745_consen 231 PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN 282 (332)
T ss_dssp EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT
T ss_pred eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445555554444 23566666667777766544
No 122
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=58.20 E-value=79 Score=28.23 Aligned_cols=78 Identities=14% Similarity=0.036 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHH---HHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDII---HSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~---~~l~ 166 (270)
+.++++++.+.+.|++-|.+-=- .+....+ +.+ +-.+.++.+.+...+.++++.|++ ++..+.+ ....
T Consensus 28 ~~l~~li~~l~~~Gv~Gi~~~Gs-tGE~~~L---t~e----Er~~~~~~~~~~~~~~~pvi~gv~-~~t~~~i~~~~~a~ 98 (303)
T PRK03620 28 AAYREHLEWLAPYGAAALFAAGG-TGEFFSL---TPD----EYSQVVRAAVETTAGRVPVIAGAG-GGTAQAIEYAQAAE 98 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEECcC-CcCcccC---CHH----HHHHHHHHHHHHhCCCCcEEEecC-CCHHHHHHHHHHHH
Confidence 46777888888999997765421 1111111 112 222333333333333466778887 4665433 4557
Q ss_pred hCCCCEEEEE
Q 024250 167 DMDADVITIE 176 (270)
Q Consensus 167 ~~~vd~l~ld 176 (270)
++++|++.+=
T Consensus 99 ~~Gadav~~~ 108 (303)
T PRK03620 99 RAGADGILLL 108 (303)
T ss_pred HhCCCEEEEC
Confidence 7899998764
No 123
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=57.61 E-value=1.4e+02 Score=26.60 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=78.6
Q ss_pred HHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
.+++-.+.+..+ ||+.+..+.. . . .+......+.+.+..+ +++.||.=-|.--+.+....+++++.+
T Consensus 34 vi~AAee~~sPvIiq~~~~~~~~-~-----g----~~~~~~~~~~~A~~~~--VPV~lHLDHg~~~e~i~~Ai~~GftSV 101 (284)
T PRK09195 34 VVETAAELHSPVIIAGTPGTFSY-A-----G----TEYLLAIVSAAAKQYH--HPLALHLDHHEKFDDIAQKVRSGVRSV 101 (284)
T ss_pred HHHHHHHhCCCEEEEcChhHHhh-C-----C----HHHHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 344444556665 8998866543 1 1 1223444444444443 568899755433356677889999999
Q ss_pred EEEccCCCc-hhHHHhhhcc----cCC--CeeeceEecCCC---------CCCCCHHHHHHHHHHHhccccCCceEecCC
Q 024250 174 TIENSRSDE-KLLSVFREGV----KYG--AGIGPGVYDIHS---------PRIPSTEEIADRINKMLAVLETNILWVNPD 237 (270)
Q Consensus 174 ~ld~~~~~~-~~l~~l~~~~----~~~--~~l~~GvVd~~~---------~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~ 237 (270)
-+|-++.++ ++++.-++.. +.| -.-=+|-|-+.+ ....+|++..+-+++- + -..++.+
T Consensus 102 M~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T----g--vD~LAva 175 (284)
T PRK09195 102 MIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEAT----G--IDSLAVA 175 (284)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHH----C--cCEEeec
Confidence 999876443 3443322210 111 112244443221 2257898888877753 2 3466777
Q ss_pred CCCCCC----CHhHHHHHHHHHHH
Q 024250 238 CGLKTR----KYTEVKPALSNMVA 257 (270)
Q Consensus 238 Cgl~~~----~~~~a~~kL~~l~~ 257 (270)
.|-.|- .|..-++-|+.+.+
T Consensus 176 iGt~HG~y~~~p~Ld~~~L~~I~~ 199 (284)
T PRK09195 176 IGTAHGMYKGEPKLDFDRLENIRQ 199 (284)
T ss_pred cCccccccCCCCcCCHHHHHHHHH
Confidence 777663 23333444444443
No 124
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=57.56 E-value=44 Score=29.40 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++.+..++|+++|++|-.... . ...+.+.+ +...++ . .- |+.+ +.++.+.++++|++
T Consensus 190 ea~~A~~~gaDyI~ld~~~~e-----------~-lk~~v~~~-------~~~ipi-~-As-GGI~~~ni~~~a~~Gvd~I 247 (265)
T TIGR00078 190 EAEEAAEAGADIIMLDNMKPE-----------E-IKEAVQLL-------KGRVLL-E-AS-GGITLDNLEEYAETGVDVI 247 (265)
T ss_pred HHHHHHHcCCCEEEECCCCHH-----------H-HHHHHHHh-------cCCCcE-E-EE-CCCCHHHHHHHHHcCCCEE
Confidence 455556789999999863221 1 12222221 111222 1 22 4453 67889999999999
Q ss_pred EE
Q 024250 174 TI 175 (270)
Q Consensus 174 ~l 175 (270)
++
T Consensus 248 sv 249 (265)
T TIGR00078 248 SS 249 (265)
T ss_pred Ee
Confidence 99
No 125
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=57.50 E-value=1.3e+02 Score=26.11 Aligned_cols=141 Identities=15% Similarity=0.149 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD 171 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd 171 (270)
..+.++.|.++|++.|.+-=|..+. . + .+.++.+.+... +.++..+ |..+..+ ++...+++++
T Consensus 22 k~~i~~~L~~~Gv~~iE~g~p~~~~-------~-~------~e~~~~l~~~~~-~~~~~~~-~r~~~~~-v~~a~~~g~~ 84 (259)
T cd07939 22 KLAIARALDEAGVDEIEVGIPAMGE-------E-E------REAIRAIVALGL-PARLIVW-CRAVKED-IEAALRCGVT 84 (259)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCH-------H-H------HHHHHHHHhcCC-CCEEEEe-ccCCHHH-HHHHHhCCcC
Confidence 3445677889999999886444321 1 0 123333333222 2334333 3234433 5677899999
Q ss_pred EEEEEccCCCc-----------hhHHHhhhc----ccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecC
Q 024250 172 VITIENSRSDE-----------KLLSVFREG----VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNP 236 (270)
Q Consensus 172 ~l~ld~~~~~~-----------~~l~~l~~~----~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp 236 (270)
.+.+=+..++. +.++.+.+. -..|..+.+|..+... .+++.+.+.++++.+ .+.+.+.+.-
T Consensus 85 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~-~G~~~i~l~D 160 (259)
T cd07939 85 AVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR---ADPDFLIEFAEVAQE-AGADRLRFAD 160 (259)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC---CCHHHHHHHHHHHHH-CCCCEEEeCC
Confidence 99987644321 112111110 0235677777766543 578899988888865 4778888888
Q ss_pred CCCCCCCCHhHHHHHHHHH
Q 024250 237 DCGLKTRKYTEVKPALSNM 255 (270)
Q Consensus 237 ~Cgl~~~~~~~a~~kL~~l 255 (270)
..|.. +|....+-++.+
T Consensus 161 T~G~~--~P~~v~~lv~~l 177 (259)
T cd07939 161 TVGIL--DPFTTYELIRRL 177 (259)
T ss_pred CCCCC--CHHHHHHHHHHH
Confidence 88855 555444433333
No 126
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=57.47 E-value=89 Score=27.58 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHH---HHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDII---HSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~---~~l~ 166 (270)
+.++++++.+.+.|++-|.+-= +.+....++. ++ .. +.++.+.+..++.+++++|++..+..+.+ ....
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~G-s~GE~~~ls~---~E-r~---~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVG-TTGESPTLTH---EE-HE---ELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECC-cCCccccCCH---HH-HH---HHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHH
Confidence 4777888889999999776531 1111111221 11 12 22222222233346678898865665444 4557
Q ss_pred hCCCCEEEEEc
Q 024250 167 DMDADVITIEN 177 (270)
Q Consensus 167 ~~~vd~l~ld~ 177 (270)
++++|++.+=.
T Consensus 94 ~~G~d~v~~~p 104 (292)
T PRK03170 94 KAGADGALVVT 104 (292)
T ss_pred HcCCCEEEECC
Confidence 78999988743
No 127
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=57.28 E-value=1.2e+02 Score=25.86 Aligned_cols=147 Identities=15% Similarity=0.200 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD 171 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd 171 (270)
..+.++.|.++|+++|.+==|.-....+... +. .+.++.+.+..+ +.++... |... ...+..+.+++++
T Consensus 21 ~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~-~~-------~~~i~~l~~~~~-~~~~~~l-~~~~-~~~i~~a~~~g~~ 89 (265)
T cd03174 21 KLEIAEALDEAGVDSIEVGSGASPKAVPQME-DD-------WEVLRAIRKLVP-NVKLQAL-VRNR-EKGIERALEAGVD 89 (265)
T ss_pred HHHHHHHHHHcCCCEEEeccCcCccccccCC-CH-------HHHHHHHHhccC-CcEEEEE-ccCc-hhhHHHHHhCCcC
Confidence 3445677788999998887665432222211 21 223334333332 2333332 3222 4467888999999
Q ss_pred EEEEEccCCC--------------c----hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceE
Q 024250 172 VITIENSRSD--------------E----KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILW 233 (270)
Q Consensus 172 ~l~ld~~~~~--------------~----~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~ 233 (270)
.+.+=...++ . +.++..++ .+..+.+.+.+.... ..+++.+.+.++.+.+ .+.+.+.
T Consensus 90 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~-~~~~~~l~~~~~~~~~-~g~~~i~ 164 (265)
T cd03174 90 EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE---AGLEVEGSLEDAFGC-KTDPEYVLEVAKALEE-AGADEIS 164 (265)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeecCC-CCCHHHHHHHHHHHHH-cCCCEEE
Confidence 9887764431 1 11222222 356677777666443 4788888888888765 5778888
Q ss_pred ecCCCCCCCCCHhHHHHHHHHHH
Q 024250 234 VNPDCGLKTRKYTEVKPALSNMV 256 (270)
Q Consensus 234 vsp~Cgl~~~~~~~a~~kL~~l~ 256 (270)
+...-|. .+|+...+-++.+.
T Consensus 165 l~Dt~G~--~~P~~v~~li~~l~ 185 (265)
T cd03174 165 LKDTVGL--ATPEEVAELVKALR 185 (265)
T ss_pred echhcCC--cCHHHHHHHHHHHH
Confidence 8877554 56765444444443
No 128
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=57.24 E-value=38 Score=29.84 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l 173 (270)
++++..++|+++||+|--. ++ .+..+++.+ +...++ -.- |+.+ +.++.+.++++|++
T Consensus 194 ea~~A~~~gaDyI~ld~~~-----------~e-~l~~~~~~~-------~~~ipi--~Ai-GGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 194 QLKEALEAGADIIMLDNMS-----------PE-ELREAVALL-------KGRVLL--EAS-GGITLENIRAYAETGVDYI 251 (268)
T ss_pred HHHHHHHcCCCEEEECCcC-----------HH-HHHHHHHHc-------CCCCcE--EEE-CCCCHHHHHHHHHcCCCEE
Confidence 4555667899999998411 11 122222221 111222 122 5553 67889999999999
Q ss_pred EEEc
Q 024250 174 TIEN 177 (270)
Q Consensus 174 ~ld~ 177 (270)
++=.
T Consensus 252 av~s 255 (268)
T cd01572 252 SVGA 255 (268)
T ss_pred EEEe
Confidence 9865
No 129
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=57.23 E-value=82 Score=28.27 Aligned_cols=80 Identities=19% Similarity=0.111 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHH---HHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDII---HSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~---~~l~ 166 (270)
+.++++++.+.+.|++-|.+-=- ......+ +.++ -.+.++.+.+..++++++++|+...+..+.+ ....
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~Gs-tGE~~~L---t~eE----r~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGT-FGECATL---TWEE----KQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcc-cccchhC---CHHH----HHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHH
Confidence 46777888888999997665310 0001111 1122 2223333333334446678887744555433 3456
Q ss_pred hCCCCEEEEEc
Q 024250 167 DMDADVITIEN 177 (270)
Q Consensus 167 ~~~vd~l~ld~ 177 (270)
+.++|++.+=.
T Consensus 101 ~~Gad~vlv~~ 111 (309)
T cd00952 101 DLGADGTMLGR 111 (309)
T ss_pred HhCCCEEEECC
Confidence 78888887763
No 130
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=57.07 E-value=1.4e+02 Score=26.54 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=80.5
Q ss_pred HHHHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCC
Q 024250 93 KDEVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD 171 (270)
Q Consensus 93 ~~~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd 171 (270)
+..+++..+.+..+ ||+.+..+.. . . .+........+.+..+ +++.||.=-|.--+.+....+++++
T Consensus 32 ~avi~AAee~~sPvIiq~~~~~~~~-~-----g----~~~~~~~~~~~a~~~~--VPValHLDH~~~~e~i~~ai~~Gft 99 (284)
T PRK12737 32 QVVVETAAELRSPVILAGTPGTFSY-A-----G----TDYIVAIAEVAARKYN--IPLALHLDHHEDLDDIKKKVRAGIR 99 (284)
T ss_pred HHHHHHHHHhCCCEEEEcCccHHhh-C-----C----HHHHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHcCCC
Confidence 33344455567775 8988766542 1 1 1223444444444443 5678897544322456778899999
Q ss_pred EEEEEccCCCc-hhHHHhhhcc----cCC--CeeeceEecCCC---------CCCCCHHHHHHHHHHHhccccCCceEec
Q 024250 172 VITIENSRSDE-KLLSVFREGV----KYG--AGIGPGVYDIHS---------PRIPSTEEIADRINKMLAVLETNILWVN 235 (270)
Q Consensus 172 ~l~ld~~~~~~-~~l~~l~~~~----~~~--~~l~~GvVd~~~---------~~~e~~e~v~~~i~~~~~~~~~~~l~vs 235 (270)
.+-+|-+..++ ++++.-++.. ..| -.-=+|.|.+.+ ....+|++..+-+++- + -..++
T Consensus 100 SVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T----g--vD~LA 173 (284)
T PRK12737 100 SVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERT----G--IDSLA 173 (284)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHh----C--CCEEe
Confidence 99999876443 4444333210 111 123345553322 1256899988877763 2 34677
Q ss_pred CCCCCCCC----CHhHHHHHHHHHHH
Q 024250 236 PDCGLKTR----KYTEVKPALSNMVA 257 (270)
Q Consensus 236 p~Cgl~~~----~~~~a~~kL~~l~~ 257 (270)
.+.|-.|- .|..-++-|+.+.+
T Consensus 174 vaiGt~HG~y~~~p~Ld~~~L~~I~~ 199 (284)
T PRK12737 174 VAIGTAHGLYKGEPKLDFERLAEIRE 199 (284)
T ss_pred eccCccccccCCCCcCCHHHHHHHHH
Confidence 77777663 34434444555443
No 131
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=56.70 E-value=1.5e+02 Score=26.49 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=78.0
Q ss_pred HHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
.+++..+.+..+ ||+.+..+.. . .. +........+.+..+ +++.||.=-|.--+.+....+++++.+
T Consensus 32 vi~AAee~~sPvIlq~s~~~~~~-~-----~~----~~~~~~~~~~a~~~~--VPValHLDHg~~~e~i~~ai~~GFtSV 99 (282)
T TIGR01858 32 VVETAAEMRSPVILAGTPGTFKH-A-----GT----EYIVALCSAASTTYN--MPLALHLDHHESLDDIRQKVHAGVRSA 99 (282)
T ss_pred HHHHHHHhCCCEEEEeCccHHhh-C-----CH----HHHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 344445556675 8998876643 1 11 222334444444443 567899854433355677889999999
Q ss_pred EEEccCCCc-hhHHHhhhcc----cCC--CeeeceEecCCC---------CCCCCHHHHHHHHHHHhccccCCceEecCC
Q 024250 174 TIENSRSDE-KLLSVFREGV----KYG--AGIGPGVYDIHS---------PRIPSTEEIADRINKMLAVLETNILWVNPD 237 (270)
Q Consensus 174 ~ld~~~~~~-~~l~~l~~~~----~~~--~~l~~GvVd~~~---------~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~ 237 (270)
-+|-+..+. ++++.-++.. ..| -.-=+|-|-+.. ....+|+++.+-+++- + -..|+.+
T Consensus 100 M~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T----g--vD~LAva 173 (282)
T TIGR01858 100 MIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEAT----G--VDSLAVA 173 (282)
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHH----C--cCEEecc
Confidence 999876443 3444333210 111 122344442211 2267888887776653 2 3467777
Q ss_pred CCCCCC----CHhHHHHHHHHHH
Q 024250 238 CGLKTR----KYTEVKPALSNMV 256 (270)
Q Consensus 238 Cgl~~~----~~~~a~~kL~~l~ 256 (270)
.|-.|- .|..-++-|+.+.
T Consensus 174 iGt~HG~yk~~p~Ldf~~L~~I~ 196 (282)
T TIGR01858 174 IGTAHGLYKKTPKLDFDRLAEIR 196 (282)
T ss_pred cCccccCcCCCCccCHHHHHHHH
Confidence 777663 3443344444443
No 132
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=56.02 E-value=78 Score=27.66 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhH---HHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDI---IHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~---~~~l~ 166 (270)
+.++++++.+.+.|++-|.+-- +.+....+ +.++. .+.++.+.+...+.+++++|++..+..+. .....
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~G-stGE~~~l---s~~Er----~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLG-TTGEAPTL---TDEER----KEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECC-CCcccccC---CHHHH----HHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHH
Confidence 4677888888899999765542 11111111 12222 22233333323334677888875555433 34567
Q ss_pred hCCCCEEEEEc
Q 024250 167 DMDADVITIEN 177 (270)
Q Consensus 167 ~~~vd~l~ld~ 177 (270)
++++|++.+=.
T Consensus 90 ~~Gad~v~v~p 100 (281)
T cd00408 90 EAGADGVLVVP 100 (281)
T ss_pred HcCCCEEEECC
Confidence 78999988754
No 133
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=55.65 E-value=88 Score=30.29 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee--ccCCchhHHHHHHh
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM--CYSNFNDIIHSIID 167 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~--c~g~~~~~~~~l~~ 167 (270)
+.|.+.++++.++||+.|.|-+.+=.. .|.. +.+.++.+-+.++.+.++.+|+ -+|--....-...+
T Consensus 155 e~~~~~a~~l~~~Gad~I~IkDtaGll-------~P~~----~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAie 223 (499)
T PRK12330 155 EGFVEQAKRLLDMGADSICIKDMAALL-------KPQP----AYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIE 223 (499)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCC-------CHHH----HHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHH
Confidence 456666777888999999998864331 2322 2333333333332124556664 33433223334477
Q ss_pred CCCCEEEEEc
Q 024250 168 MDADVITIEN 177 (270)
Q Consensus 168 ~~vd~l~ld~ 177 (270)
+++|.++.=.
T Consensus 224 AGad~vDtai 233 (499)
T PRK12330 224 AGVDVVDTAI 233 (499)
T ss_pred cCCCEEEeec
Confidence 8888866554
No 134
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=55.58 E-value=48 Score=32.11 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=40.7
Q ss_pred CchhHHHHHHhCCCCEEEEEccCCC----chhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhc
Q 024250 157 NFNDIIHSIIDMDADVITIENSRSD----EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 225 (270)
Q Consensus 157 ~~~~~~~~l~~~~vd~l~ld~~~~~----~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~ 225 (270)
+..+..+.|.+.++|.+.+|.++.+ .+.++.+++..+.+-.|..|. +.|++.+.+.++...+
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGn-------V~t~e~a~~li~aGAd 307 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGN-------VVDREGFRYLAEAGAD 307 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEecc-------ccCHHHHHHHHHcCCC
Confidence 3346778899999999999976654 345566665322224566776 4677777777765444
No 135
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=55.28 E-value=1.5e+02 Score=26.28 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 94 DEVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 94 ~~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
..+++..+.++.+ ||+.+-.+.. .+ .. +........+.+..+. +++.+|.|-|..-+.+...++.+++.
T Consensus 31 avi~aAe~~~~PvIl~~~~~~~~~-~~----~~----~~~~~~~~~~a~~~~~-vpv~lhlDH~~~~e~i~~ai~~Gf~s 100 (282)
T TIGR01859 31 AILEAAEEENSPVIIQVSEGAIKY-MG----GY----KMAVAMVKTLIERMSI-VPVALHLDHGSSYESCIKAIKAGFSS 100 (282)
T ss_pred HHHHHHHHhCCCEEEEcCcchhhc-cC----cH----HHHHHHHHHHHHHCCC-CeEEEECCCCCCHHHHHHHHHcCCCE
Confidence 3344555567775 7887755432 11 12 2223344444444431 56899999775545667788999999
Q ss_pred EEEEccCCC
Q 024250 173 ITIENSRSD 181 (270)
Q Consensus 173 l~ld~~~~~ 181 (270)
+.+|-+..+
T Consensus 101 Vmid~s~l~ 109 (282)
T TIGR01859 101 VMIDGSHLP 109 (282)
T ss_pred EEECCCCCC
Confidence 999987744
No 136
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=54.73 E-value=72 Score=28.38 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=15.1
Q ss_pred HHHHHHHcCCCEEEeccCccc
Q 024250 95 EVEDLEKAGINVIQIDEAALR 115 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~ 115 (270)
.++.|.++|++.|++==|..+
T Consensus 28 ia~~L~~~Gv~~IE~gfP~~~ 48 (284)
T cd07942 28 FFKLLVKIGFKEIEVGFPSAS 48 (284)
T ss_pred HHHHHHHcCCCEEEEeCCCCC
Confidence 456688899999877645544
No 137
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=54.55 E-value=99 Score=28.37 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=46.1
Q ss_pred hHHHHHHh--CCCCEEEEEccCCCc----hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceE
Q 024250 160 DIIHSIID--MDADVITIENSRSDE----KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILW 233 (270)
Q Consensus 160 ~~~~~l~~--~~vd~l~ld~~~~~~----~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~ 233 (270)
+.+..|.+ .++|.|.+|.++++. +.++.+++..| +..|..|+ +.|+|.+.+.++...+.+ ++-
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P-~~~vIaGN-------V~T~e~a~~Li~aGAD~v---KVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWP-DKTICAGN-------VVTGEMVEELILSGADIV---KVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCC-CCcEEEec-------ccCHHHHHHHHHcCCCEE---EEc
Confidence 56677777 589999999988653 33455555322 46788888 467788888888766654 445
Q ss_pred ecCCC
Q 024250 234 VNPDC 238 (270)
Q Consensus 234 vsp~C 238 (270)
+.|++
T Consensus 180 IGpGS 184 (346)
T PRK05096 180 IGPGS 184 (346)
T ss_pred ccCCc
Confidence 55653
No 138
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=54.21 E-value=1.6e+02 Score=26.24 Aligned_cols=131 Identities=13% Similarity=0.162 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-CchhHHHHHHhCCCC
Q 024250 94 DEVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NFNDIIHSIIDMDAD 171 (270)
Q Consensus 94 ~~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~~~~~~~l~~~~vd 171 (270)
..+++..+.+..+ ||+.+-.+.. . + .+......+...+..+ +++.||.=-| ++ +.+....+++++
T Consensus 33 avi~AAe~~~sPvIl~~~~~~~~~-~-----g----~~~~~~~~~~~A~~~~--vPV~lHLDH~~~~-e~i~~Ai~~Gft 99 (283)
T PRK07998 33 SILNAIERSGLPNFIQIAPTNAQL-S-----G----YDYIYEIVKRHADKMD--VPVSLHLDHGKTF-EDVKQAVRAGFT 99 (283)
T ss_pred HHHHHHHHhCCCEEEECcHhHHhh-C-----C----HHHHHHHHHHHHHHCC--CCEEEECcCCCCH-HHHHHHHHcCCC
Confidence 3344455567775 7886544321 1 1 2233344444444443 5678887554 44 345566799999
Q ss_pred EEEEEccCCCc-hhHHHhhhcc----cCCCe--eeceEecCCC-------CCCCCHHHHHHHHHHHhccccCCceEecCC
Q 024250 172 VITIENSRSDE-KLLSVFREGV----KYGAG--IGPGVYDIHS-------PRIPSTEEIADRINKMLAVLETNILWVNPD 237 (270)
Q Consensus 172 ~l~ld~~~~~~-~~l~~l~~~~----~~~~~--l~~GvVd~~~-------~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~ 237 (270)
.+.+|-+..+. ++++.-++.. ..|-. .-+|.|-+.. ....+|+++.+-+++. + -.++..+
T Consensus 100 SVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~T----g--vD~LAva 173 (283)
T PRK07998 100 SVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERT----G--CDMLAVS 173 (283)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHh----C--cCeeehh
Confidence 99999876444 4555544321 12322 3566664332 2357888886666553 2 2366677
Q ss_pred CCCCCC
Q 024250 238 CGLKTR 243 (270)
Q Consensus 238 Cgl~~~ 243 (270)
.|-.|-
T Consensus 174 iGt~HG 179 (283)
T PRK07998 174 IGNVHG 179 (283)
T ss_pred cccccc
Confidence 766653
No 139
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=53.65 E-value=37 Score=31.26 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=44.7
Q ss_pred chhHHHHHHhCCCCEEEEEccCCCc----hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceE
Q 024250 158 FNDIIHSIIDMDADVITIENSRSDE----KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILW 233 (270)
Q Consensus 158 ~~~~~~~l~~~~vd~l~ld~~~~~~----~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~ 233 (270)
..+..+.|.+.++|.|.+|.++.+. +.++.+++..| +..|..|+| .|.+...+.++...+.+ ++-
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~-~~~viaGNV-------~T~e~a~~L~~aGad~v---kVG 177 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFP-DVPVIAGNV-------VTYEGAKDLIDAGADAV---KVG 177 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHST-TSEEEEEEE--------SHHHHHHHHHTT-SEE---EES
T ss_pred HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCC-CceEEeccc-------CCHHHHHHHHHcCCCEE---EEe
Confidence 4467889999999999999988543 34556665422 467899985 56677777666655543 344
Q ss_pred ecCCC
Q 024250 234 VNPDC 238 (270)
Q Consensus 234 vsp~C 238 (270)
+.|++
T Consensus 178 iGpGs 182 (352)
T PF00478_consen 178 IGPGS 182 (352)
T ss_dssp SSSST
T ss_pred ccCCc
Confidence 55553
No 140
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=53.05 E-value=1.2e+02 Score=26.58 Aligned_cols=80 Identities=11% Similarity=0.011 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhH---HHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDI---IHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~---~~~l~ 166 (270)
+.++.+++.+.+.|++-|.+-- +.+....++ .++. .. .++.+.+...+.++++.|++..+..+. .....
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~G-stGE~~~lt---~~Er-~~---l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVCG-TTGESPTLS---DEEH-EA---VIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEECC-CCcchhhCC---HHHH-HH---HHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHH
Confidence 4677788888899999766541 111111121 1221 22 222222222234567788775455543 34557
Q ss_pred hCCCCEEEEEc
Q 024250 167 DMDADVITIEN 177 (270)
Q Consensus 167 ~~~vd~l~ld~ 177 (270)
++++|++.+=.
T Consensus 93 ~~G~d~v~~~~ 103 (284)
T cd00950 93 KAGADAALVVT 103 (284)
T ss_pred HcCCCEEEEcc
Confidence 78999887764
No 141
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=52.89 E-value=94 Score=29.84 Aligned_cols=74 Identities=15% Similarity=0.027 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee--ccCCchhHHHHHHhC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM--CYSNFNDIIHSIIDM 168 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~--c~g~~~~~~~~l~~~ 168 (270)
.|.+.++++.++|++.|.|-+.+=.. .|... ...+.++++ ..+ +++++|+ -.|-.....-...++
T Consensus 164 y~~~~a~~l~~~Gad~I~IkDtaG~l-------~P~~v-~~Lv~alk~---~~~--~pi~~H~Hnt~GlA~An~laAieA 230 (468)
T PRK12581 164 YYLSLVKELVEMGADSICIKDMAGIL-------TPKAA-KELVSGIKA---MTN--LPLIVHTHATSGISQMTYLAAVEA 230 (468)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCc-------CHHHH-HHHHHHHHh---ccC--CeEEEEeCCCCccHHHHHHHHHHc
Confidence 45566777788999999998864331 23222 222333333 222 4455664 334332333345788
Q ss_pred CCCEEEEEc
Q 024250 169 DADVITIEN 177 (270)
Q Consensus 169 ~vd~l~ld~ 177 (270)
++|.++.=.
T Consensus 231 Gad~vD~ai 239 (468)
T PRK12581 231 GADRIDTAL 239 (468)
T ss_pred CCCEEEeec
Confidence 999876654
No 142
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=52.88 E-value=1.7e+02 Score=26.02 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-CchhHHHHHHhCCCC
Q 024250 94 DEVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NFNDIIHSIIDMDAD 171 (270)
Q Consensus 94 ~~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~~~~~~~l~~~~vd 171 (270)
..+++..+.++.+ ||+.+..+.. . . .+........+.+..+ +++.||.=-| ++. .+....+++++
T Consensus 28 avi~AAe~~~sPvIi~~~~~~~~~-~-----~----~~~~~~~~~~~a~~~~--VPV~lHLDH~~~~~-~i~~ai~~Gft 94 (276)
T cd00947 28 AILEAAEETRSPVILQISEGAIKY-A-----G----LELLVAMVKAAAERAS--VPVALHLDHGSSFE-LIKRAIRAGFS 94 (276)
T ss_pred HHHHHHHHhCCCEEEEcCcchhhh-C-----C----HHHHHHHHHHHHHHCC--CCEEEECCCCCCHH-HHHHHHHhCCC
Confidence 3344455567775 8998865542 1 1 1223334444444343 5678887544 454 44566789999
Q ss_pred EEEEEccCCC-chhHHHhhhcc----cCC--CeeeceEecCCC-------CCCCCHHHHHHHHHHHhccccCCceEecCC
Q 024250 172 VITIENSRSD-EKLLSVFREGV----KYG--AGIGPGVYDIHS-------PRIPSTEEIADRINKMLAVLETNILWVNPD 237 (270)
Q Consensus 172 ~l~ld~~~~~-~~~l~~l~~~~----~~~--~~l~~GvVd~~~-------~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~ 237 (270)
.+-+|-+..+ .++++.-++.. ..| -..=+|-|.+.. ....+|+++.+-+++. + -.+++++
T Consensus 95 SVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~T----g--vD~LAvs 168 (276)
T cd00947 95 SVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEET----G--VDALAVA 168 (276)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHH----C--CCEEEec
Confidence 9999987644 34444333210 111 123355554332 2357888887777663 2 3467777
Q ss_pred CCCCC
Q 024250 238 CGLKT 242 (270)
Q Consensus 238 Cgl~~ 242 (270)
.|-.|
T Consensus 169 iGt~H 173 (276)
T cd00947 169 IGTSH 173 (276)
T ss_pred cCccc
Confidence 77766
No 143
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=52.80 E-value=81 Score=31.23 Aligned_cols=77 Identities=17% Similarity=0.098 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCC
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMD 169 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~ 169 (270)
+.|.+.++++.++|++.|.|-|.+=.. .|... ...+..+++. .+.++.++.|.-.|-.-...-...+.+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~~-------~P~~~-~~lv~~lk~~---~~~pi~~H~Hnt~Gla~An~laAv~aG 222 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAGLL-------TPYAA-YELVKALKEE---VDLPVQLHSHCTSGLAPMTYLKAVEAG 222 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCc-------CHHHH-HHHHHHHHHh---CCCeEEEEEcCCCCcHHHHHHHHHHhC
Confidence 456667777888999999998854331 23222 2223333332 221233444434443323333457788
Q ss_pred CCEEEEEc
Q 024250 170 ADVITIEN 177 (270)
Q Consensus 170 vd~l~ld~ 177 (270)
+|.+..=+
T Consensus 223 ad~vD~ai 230 (592)
T PRK09282 223 VDIIDTAI 230 (592)
T ss_pred CCEEEeec
Confidence 88766554
No 144
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=52.53 E-value=82 Score=31.13 Aligned_cols=77 Identities=18% Similarity=0.091 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCC
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMD 169 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~ 169 (270)
+.|.+.++++.++|++.|.|-|.+=.. .|.. +.+.++.+-+.++.++.++.|.-.|-.....=...+.+
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~~-------~P~~----v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaG 217 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGIL-------TPKA----AYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAG 217 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCc-------CHHH----HHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC
Confidence 455666777888999999988854331 2322 22333333233332233444433343322233446788
Q ss_pred CCEEEEEc
Q 024250 170 ADVITIEN 177 (270)
Q Consensus 170 vd~l~ld~ 177 (270)
+|.++.-.
T Consensus 218 a~~vd~ai 225 (582)
T TIGR01108 218 ADGIDTAI 225 (582)
T ss_pred CCEEEecc
Confidence 88776655
No 145
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=52.47 E-value=23 Score=31.78 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHHHHHHH
Q 024250 209 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALS 253 (270)
Q Consensus 209 ~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~ 253 (270)
.++|||+|+++|++..+..|.+.+++.+++++ +.+...+.|+
T Consensus 272 ~vGtpe~v~~~l~~~~~~~G~~~~~~~~~~~~---~~~~~~~~~~ 313 (315)
T cd01096 272 AVGTPEECIEIIQLAIEATGIKNILLSFESMG---SEDEIIASIN 313 (315)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeccCCC---CHHHHHHHHh
Confidence 36999999999987777778899998888654 5564444443
No 146
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=52.20 E-value=1.8e+02 Score=26.25 Aligned_cols=91 Identities=13% Similarity=0.225 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccC---ccccCCCC----C----CccHHHHHHHHHHHHHHHhcCCCCCceEEEee
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDEA---ALREGLPL----R----KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM 153 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDEP---~l~~~l~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~ 153 (270)
++.+.+.+.+.++.+.++|++.|+|.-- .+...++. + .+....-.++..+.++.+-+.+..+..+.+-+
T Consensus 149 I~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri 228 (336)
T cd02932 149 IAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRI 228 (336)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEE
Confidence 4677778888888888999999999841 11111111 0 11122223444455555444453334455443
Q ss_pred cc-----CC--ch---hHHHHHHhCCCCEEEE
Q 024250 154 CY-----SN--FN---DIIHSIIDMDADVITI 175 (270)
Q Consensus 154 c~-----g~--~~---~~~~~l~~~~vd~l~l 175 (270)
.. +. .. .+...|.+.++|.|++
T Consensus 229 ~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 229 SATDWVEGGWDLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 31 11 22 3455667788888875
No 147
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=51.95 E-value=1.6e+02 Score=25.60 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=48.9
Q ss_pred ceEEEeeccCCchhHHHHHHhCCC--CEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHh
Q 024250 147 TQIHTHMCYSNFNDIIHSIIDMDA--DVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKML 224 (270)
Q Consensus 147 ~~i~lH~c~g~~~~~~~~l~~~~v--d~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~ 224 (270)
.++.||+- +.+.+.++.|.+.++ .++--=|. ++.+..+.+.+ .|-.+++|-.- +.. . ...+++++
T Consensus 128 ~Pv~iH~r-~a~~~~~~il~~~~~~~~~i~H~fs-G~~~~a~~~l~---~G~~iS~~g~i---t~~-~----~~~~~~~~ 194 (258)
T PRK11449 128 LPVILHSR-RTHDKLAMHLKRHDLPRTGVVHGFS-GSLQQAERFVQ---LGYKIGVGGTI---TYP-R----ASKTRDVI 194 (258)
T ss_pred CCEEEEec-CccHHHHHHHHhcCCCCCeEEEcCC-CCHHHHHHHHH---CCCEEEeCccc---ccc-C----cHHHHHHH
Confidence 56789975 677888888877543 23322233 34444444444 24445443221 111 1 13456677
Q ss_pred ccccCCceEecCCCCCCC
Q 024250 225 AVLETNILWVNPDCGLKT 242 (270)
Q Consensus 225 ~~~~~~~l~vsp~Cgl~~ 242 (270)
+.+|.+++++-+|+.+-+
T Consensus 195 ~~ipldriL~ETD~P~l~ 212 (258)
T PRK11449 195 AKLPLASLLLETDAPDMP 212 (258)
T ss_pred HhCChhhEEEecCCCCCC
Confidence 788999999999998743
No 148
>PLN02229 alpha-galactosidase
Probab=51.90 E-value=1.7e+02 Score=27.77 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCC---ccHHHH---HHHHHHHHHHHhcCCCCCceEEEeecc
Q 024250 82 HETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRK---SEHAFY---LDWAVHSFRITNCGVQDTTQIHTHMCY 155 (270)
Q Consensus 82 ~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~i~lH~c~ 155 (270)
++.+.+.++++.. .-|.++|.++|.||+-......+... .+++.| ++...+.++. . +++.+||++.
T Consensus 79 E~~i~~~ad~~v~--~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~--~----GlKfGIy~d~ 150 (427)
T PLN02229 79 ETVIKETADALVS--TGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHS--K----GLKLGIYSDA 150 (427)
T ss_pred HHHHHHHHHHHHH--hHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHH--C----CCceEEeccC
Confidence 3455555554433 34678999999999987653211110 123333 2222333332 1 3556666543
Q ss_pred CC---------c---hhHHHHHHhCCCCEEEEEccC
Q 024250 156 SN---------F---NDIIHSIIDMDADVITIENSR 179 (270)
Q Consensus 156 g~---------~---~~~~~~l~~~~vd~l~ld~~~ 179 (270)
|. + ..-...+.+-+||-|-+|...
T Consensus 151 G~~TC~~~pGS~g~e~~DA~~fA~WGVDylK~D~C~ 186 (427)
T PLN02229 151 GVFTCQVRPGSLFHEVDDADIFASWGVDYLKYDNCY 186 (427)
T ss_pred CCcccCCCCCCccHHHHHHHHHHHcCCCEEEecCCC
Confidence 31 1 134567899999999999864
No 149
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=51.82 E-value=97 Score=27.49 Aligned_cols=78 Identities=18% Similarity=0.104 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHH---HHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDII---HSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~---~~l~ 166 (270)
+.++++++.+.+.|++-|.+-= +.+....++ .++ -.+.++.+.+..++.++++.|+. .+..+.+ ....
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~G-stGE~~~Lt---~eE----r~~v~~~~~~~~~g~~pvi~gv~-~~t~~ai~~a~~a~ 96 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAG-GTGEFFSLT---PAE----YEQVVEIAVSTAKGKVPVYTGVG-GNTSDAIEIARLAE 96 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECC-CCcCcccCC---HHH----HHHHHHHHHHHhCCCCcEEEecC-ccHHHHHHHHHHHH
Confidence 4677888888899999766531 011111111 111 12233333333333466788887 4555433 4456
Q ss_pred hCCCCEEEEE
Q 024250 167 DMDADVITIE 176 (270)
Q Consensus 167 ~~~vd~l~ld 176 (270)
++++|++.+=
T Consensus 97 ~~Gadav~~~ 106 (296)
T TIGR03249 97 KAGADGYLLL 106 (296)
T ss_pred HhCCCEEEEC
Confidence 7899998763
No 150
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=51.16 E-value=1.9e+02 Score=26.28 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccC---ccccCCCC----C----CccH---HHHHHHHHHHHHHHhcCCCCCceEE
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDEA---ALREGLPL----R----KSEH---AFYLDWAVHSFRITNCGVQDTTQIH 150 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDEP---~l~~~l~~----~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (270)
++.+.+.+.+.++.+.++|++.|+|.-- .+...++. + .+.. -++.-++++++++.+ + .++.
T Consensus 137 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~---~--~~v~ 211 (337)
T PRK13523 137 IKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW---D--GPLF 211 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc---C--CCeE
Confidence 5677888888888899999999999854 11112211 1 1122 233444455555543 2 2344
Q ss_pred Eeecc------C-Cch---hHHHHHHhCCCCEEEEEc
Q 024250 151 THMCY------S-NFN---DIIHSIIDMDADVITIEN 177 (270)
Q Consensus 151 lH~c~------g-~~~---~~~~~l~~~~vd~l~ld~ 177 (270)
+-+.. | +.. .+...|.+.++|.|++-.
T Consensus 212 vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 212 VRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred EEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 44432 1 111 355677778899998854
No 151
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=51.15 E-value=1e+02 Score=27.38 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHH---HHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDII---HSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~---~~l~ 166 (270)
+.++++++.+.+.|++-|.+-= +.+....+ + .++-.+.++.+.+..+++++++.|++..+..+.+ ....
T Consensus 21 ~~l~~lv~~~~~~Gv~gi~v~G-stGE~~~L---s----~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~ 92 (294)
T TIGR02313 21 EALRELIEFQIEGGSHAISVGG-TSGEPGSL---T----LEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAE 92 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEECc-cCcccccC---C----HHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHH
Confidence 3666778888889999765532 00111111 1 1222233333333344446778888754554433 3456
Q ss_pred hCCCCEEEEEc
Q 024250 167 DMDADVITIEN 177 (270)
Q Consensus 167 ~~~vd~l~ld~ 177 (270)
++++|++.+=.
T Consensus 93 ~~Gad~v~v~p 103 (294)
T TIGR02313 93 EAGADAAMVIV 103 (294)
T ss_pred HcCCCEEEEcC
Confidence 68888887764
No 152
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=50.73 E-value=1.7e+02 Score=25.59 Aligned_cols=83 Identities=11% Similarity=0.061 Sum_probs=53.7
Q ss_pred ceEEEeeccCCchhHHHHHHhCC--CCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHh
Q 024250 147 TQIHTHMCYSNFNDIIHSIIDMD--ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKML 224 (270)
Q Consensus 147 ~~i~lH~c~g~~~~~~~~l~~~~--vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~ 224 (270)
.+++|| |.+-..+.++.|.+.+ ..++--=|+. +.+..+.+-+ .|-.+++|-+-+... +..+++++
T Consensus 126 lPviIH-~R~A~~d~~~iL~~~~~~~~gi~HcFsG-s~e~a~~~~d---~G~yisisG~itfk~--------a~~~~ev~ 192 (256)
T COG0084 126 LPVIIH-TRDAHEDTLEILKEEGAPVGGVLHCFSG-SAEEARKLLD---LGFYISISGIVTFKN--------AEKLREVA 192 (256)
T ss_pred CCEEEE-ccccHHHHHHHHHhcCCCCCEEEEccCC-CHHHHHHHHH---cCeEEEECceeecCC--------cHHHHHHH
Confidence 568899 5466778888888876 5555555554 3444444443 243455443333221 45667778
Q ss_pred ccccCCceEecCCCCCCC
Q 024250 225 AVLETNILWVNPDCGLKT 242 (270)
Q Consensus 225 ~~~~~~~l~vsp~Cgl~~ 242 (270)
+.+|.+++++=+||.+-.
T Consensus 193 ~~iPldrLL~ETDsPyl~ 210 (256)
T COG0084 193 RELPLDRLLLETDAPYLA 210 (256)
T ss_pred HhCCHhHeEeccCCCCCC
Confidence 889999999999998864
No 153
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=50.69 E-value=84 Score=31.14 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee--ccCCchhHHHHHHh
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM--CYSNFNDIIHSIID 167 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~--c~g~~~~~~~~l~~ 167 (270)
+.|.+.++++.++|++.|.|-|.+=.. .|... ...+..+++. ++ .++++|+ -.|--....-...+
T Consensus 155 ~~~~~~a~~l~~~Gad~i~i~Dt~G~l-------~P~~~-~~lv~~lk~~---~~--~pi~~H~Hnt~GlA~An~laAie 221 (593)
T PRK14040 155 QTWVDLAKQLEDMGVDSLCIKDMAGLL-------KPYAA-YELVSRIKKR---VD--VPLHLHCHATTGLSTATLLKAIE 221 (593)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCc-------CHHHH-HHHHHHHHHh---cC--CeEEEEECCCCchHHHHHHHHHH
Confidence 456666777888999999998864331 23222 2223333332 22 3455554 33433223334477
Q ss_pred CCCCEEEEEc
Q 024250 168 MDADVITIEN 177 (270)
Q Consensus 168 ~~vd~l~ld~ 177 (270)
+++|.++.=.
T Consensus 222 AGa~~vD~ai 231 (593)
T PRK14040 222 AGIDGVDTAI 231 (593)
T ss_pred cCCCEEEecc
Confidence 8888776554
No 154
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=50.45 E-value=2e+02 Score=26.21 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccC--cc-ccCCCC----C----CccHHHHHHHHHHHHHHHhcCCCCCceEEEee
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDEA--AL-REGLPL----R----KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM 153 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDEP--~l-~~~l~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~ 153 (270)
++.+.+.+.+.++.+.++|++.|+|.-- .| ...+.. + .+....-..+..+.++.+-+.++.+..+.+=+
T Consensus 136 I~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl 215 (343)
T cd04734 136 IEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRI 215 (343)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 4667777777778888899999999952 11 111111 1 11222112344444444444443334444433
Q ss_pred ccCC-------ch---hHHHHHHhCC-CCEEEEE
Q 024250 154 CYSN-------FN---DIIHSIIDMD-ADVITIE 176 (270)
Q Consensus 154 c~g~-------~~---~~~~~l~~~~-vd~l~ld 176 (270)
...+ .. ...+.|.+.+ +|.+++-
T Consensus 216 ~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 216 SGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred ehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 3222 12 3456677787 8999883
No 155
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=50.20 E-value=2.3e+02 Score=26.90 Aligned_cols=88 Identities=11% Similarity=0.157 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc-CCc-hhHHHHHHh
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY-SNF-NDIIHSIID 167 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~-g~~-~~~~~~l~~ 167 (270)
+.+.++++.|.+.|++.|.|-+-.+...- . +...+ .+.++.+.+ +.+...+.+++.. .++ .+.++.+.+
T Consensus 186 e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~-~---~~~~l----~~Ll~~l~~-~~~~~~ir~~~~~p~~~~~ell~~m~~ 256 (449)
T PRK14332 186 KSIVREIQDLQEKGIRQVTLLGQNVNSYK-E---QSTDF----AGLIQMLLD-ETTIERIRFTSPHPKDFPDHLLSLMAK 256 (449)
T ss_pred HHHHHHHHHHHHCCCeEEEEecccCCccc-C---CcccH----HHHHHHHhc-CCCcceEEEECCCcccCCHHHHHHHHh
Confidence 35556677788889998766554444321 0 10112 233333322 2211233333322 122 246777778
Q ss_pred CC--CCEEEEEccCCCchhHH
Q 024250 168 MD--ADVITIENSRSDEKLLS 186 (270)
Q Consensus 168 ~~--vd~l~ld~~~~~~~~l~ 186 (270)
.+ +..+++-+-+.+.+.|+
T Consensus 257 ~~~~~~~l~lgvQSgsd~vLk 277 (449)
T PRK14332 257 NPRFCPNIHLPLQAGNTRVLE 277 (449)
T ss_pred CCCccceEEECCCcCCHHHHH
Confidence 87 67777776544433333
No 156
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=49.44 E-value=1.8e+02 Score=25.50 Aligned_cols=145 Identities=10% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHHHHHHcCCCEEEeccCccccC-CCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-----------Cc-hhH
Q 024250 95 EVEDLEKAGINVIQIDEAALREG-LPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-----------NF-NDI 161 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-----------~~-~~~ 161 (270)
.++.|.++|+++|.+=-|+.... ......++. ...+.+.+. .+ +.++..+ |.+ +. ..-
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~----e~i~~~~~~---~~-~~~l~~~-~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRFLNEDPW----ERLRELRKA---MP-NTPLQML-LRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccccCCCHH----HHHHHHHHh---CC-CCceehh-cccccccCccCCCcHHHHHH
Confidence 46778899999998887773110 000111221 122223322 22 1333333 322 11 234
Q ss_pred HHHHHhCCCCEEEEEccCCCchhH----HHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCC
Q 024250 162 IHSIIDMDADVITIENSRSDEKLL----SVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPD 237 (270)
Q Consensus 162 ~~~l~~~~vd~l~ld~~~~~~~~l----~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~ 237 (270)
++...+++++.+.+=...++.+.+ +..++ .+..+...+ +......-+++.+.+.++++.+ .|.+++.+.-.
T Consensus 97 i~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~---~G~~v~~~i-~~~~~~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT 171 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKK---AGKHVEGAI-CYTGSPVHTLEYYVKLAKELED-MGADSICIKDM 171 (275)
T ss_pred HHHHHHcCCCEEEEeecCChHHHHHHHHHHHHH---CCCeEEEEE-EecCCCCCCHHHHHHHHHHHHH-cCCCEEEEcCC
Confidence 456678899999986554444332 22232 244444433 3222235688999998888865 48899999888
Q ss_pred CCCCCCCHhHHHHHHHHH
Q 024250 238 CGLKTRKYTEVKPALSNM 255 (270)
Q Consensus 238 Cgl~~~~~~~a~~kL~~l 255 (270)
.|.. +|....+-++.+
T Consensus 172 ~G~~--~P~~v~~lv~~l 187 (275)
T cd07937 172 AGLL--TPYAAYELVKAL 187 (275)
T ss_pred CCCC--CHHHHHHHHHHH
Confidence 8876 455444444433
No 157
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=48.50 E-value=1.9e+02 Score=25.34 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=80.5
Q ss_pred HHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 93 KDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
.+.++.|.++|++.|++=-|..+. +. ..+.+.+... ..+ ..+..| +..+..+ ++...+++++.
T Consensus 25 ~~i~~~L~~~Gv~~IEvG~P~~~~---------~~--~~~~~~l~~~--~~~--~~v~~~-~r~~~~d-i~~a~~~g~~~ 87 (262)
T cd07948 25 IEIAKALDAFGVDYIELTSPAASP---------QS--RADCEAIAKL--GLK--AKILTH-IRCHMDD-ARIAVETGVDG 87 (262)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCH---------HH--HHHHHHHHhC--CCC--CcEEEE-ecCCHHH-HHHHHHcCcCE
Confidence 445677889999999987665431 11 1112222221 111 233333 3346643 57788899999
Q ss_pred EEEEccCCC-----------chhHHHhhhc----ccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCC
Q 024250 173 ITIENSRSD-----------EKLLSVFREG----VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPD 237 (270)
Q Consensus 173 l~ld~~~~~-----------~~~l~~l~~~----~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~ 237 (270)
+.+-+..++ .+.++.+.+. -..|..+.+++-|+... +++.+.+.++++.+ .+.+++.+.-.
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~---~~~~l~~~~~~~~~-~g~~~i~l~Dt 163 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRS---DLVDLLRVYRAVDK-LGVNRVGIADT 163 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCC---CHHHHHHHHHHHHH-cCCCEEEECCc
Confidence 998764321 1223333221 02356788888877543 47777777777654 47788888777
Q ss_pred CCCCCCCHhHHHHHHHHHH
Q 024250 238 CGLKTRKYTEVKPALSNMV 256 (270)
Q Consensus 238 Cgl~~~~~~~a~~kL~~l~ 256 (270)
-|.. +|....+-++.+.
T Consensus 164 ~G~~--~P~~v~~~~~~~~ 180 (262)
T cd07948 164 VGIA--TPRQVYELVRTLR 180 (262)
T ss_pred CCCC--CHHHHHHHHHHHH
Confidence 7744 5665444444443
No 158
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=48.45 E-value=2.2e+02 Score=26.76 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh---HHHHHHh
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIID 167 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~---~~~~l~~ 167 (270)
.+.+.+.++...|+|+|.=||+...... . .+++-...+.+++++..+.-.....-..+++ ++..+ ..+.+.+
T Consensus 160 ~~a~~~y~~~~GGvD~IKDDE~l~~q~~--~--p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~~~~ 234 (406)
T cd08207 160 ETAALVRQLAAAGIDFIKDDELLANPPY--S--PLDERVRAVMRVINDHAQRTGRKVMYAFNIT-DDIDEMRRNHDLVVE 234 (406)
T ss_pred HHHHHHHHHHhCCCCcccccccCCCCCC--C--cHHHHHHHHHHHHHHHHHhhCCcceEEEecC-CCHHHHHHHHHHHHH
Confidence 3344455677789999999997543211 1 2233355667777776554332222234455 55543 4456788
Q ss_pred CCCCEEEEEccCCCchhHHHhhh
Q 024250 168 MDADVITIENSRSDEKLLSVFRE 190 (270)
Q Consensus 168 ~~vd~l~ld~~~~~~~~l~~l~~ 190 (270)
.+.+++.+++...+...+..+++
T Consensus 235 ~G~~~~mv~~~~~G~~~l~~l~~ 257 (406)
T cd08207 235 AGGTCVMVSLNSVGLSGLAALRR 257 (406)
T ss_pred hCCCeEEEeccccchHHHHHHHh
Confidence 99999999986655555666654
No 159
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=48.02 E-value=1.2e+02 Score=26.97 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=8.3
Q ss_pred HHHHHHHcCCCEEEecc
Q 024250 95 EVEDLEKAGINVIQIDE 111 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDE 111 (270)
.++.+.++|++.|.|-|
T Consensus 160 ~~~~~~~~G~d~i~l~D 176 (287)
T PRK05692 160 VAERLFALGCYEISLGD 176 (287)
T ss_pred HHHHHHHcCCcEEEecc
Confidence 34444445555555544
No 160
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=47.91 E-value=1.2e+02 Score=26.61 Aligned_cols=80 Identities=14% Similarity=0.068 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHH---HHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDII---HSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~---~~l~ 166 (270)
+.++++++.+.+.|++-|.+-= +.+....++ .++. .+.++.+.+...+.++++.|++..+..+.+ ....
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~~~G-stGE~~~Ls---~~Er----~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIVVVG-TTGESPTLS---HEEH----KKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEECc-cCcccccCC---HHHH----HHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHH
Confidence 4677778888899999766521 111111111 1111 222333333233346678888755555433 4456
Q ss_pred hCCCCEEEEEc
Q 024250 167 DMDADVITIEN 177 (270)
Q Consensus 167 ~~~vd~l~ld~ 177 (270)
++++|++.+=.
T Consensus 91 ~~Gad~v~v~p 101 (285)
T TIGR00674 91 DVGADGFLVVT 101 (285)
T ss_pred HcCCCEEEEcC
Confidence 78899887753
No 161
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.55 E-value=2.6e+02 Score=26.64 Aligned_cols=136 Identities=12% Similarity=0.177 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCcccc-CCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-Cc-hhHHHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALRE-GLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NF-NDIIHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~-~~~~~~l~ 166 (270)
+.+.++++.+.+.|++.|.+-...+.. +.+.. ... ...+.++.+.+ +++-..+.+++... .. .+.++.|.
T Consensus 187 e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~--~~~----~l~~Ll~~l~~-~~gi~~ir~~~~~p~~i~~ell~~l~ 259 (459)
T PRK14338 187 AEIVEEVRRIAARGAKEITLLGQIVDSYGHDLP--GRP----DLADLLEAVHE-IPGLERLRFLTSHPAWMTDRLIHAVA 259 (459)
T ss_pred HHHHHHHHHHHHCCCeEEEEeeecCCCcccccC--ChH----HHHHHHHHHHh-cCCcceEEEEecChhhcCHHHHHHHh
Confidence 344456777888899887666655443 11110 111 12333443322 22111232332211 12 24667777
Q ss_pred hCC--CCEEEEEccCCCchhHHHh----------------hhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhcccc
Q 024250 167 DMD--ADVITIENSRSDEKLLSVF----------------REGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 228 (270)
Q Consensus 167 ~~~--vd~l~ld~~~~~~~~l~~l----------------~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~ 228 (270)
+++ +..+++-+.+.+.+.|+.+ ++.. .+-.+..-+|=+- --||.++..+.++.+.+ ++
T Consensus 260 ~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~-pgi~i~~d~IvG~--PgET~ed~~~ti~~l~~-l~ 335 (459)
T PRK14338 260 RLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAI-PDVSLTTDIIVGH--PGETEEQFQRTYDLLEE-IR 335 (459)
T ss_pred cccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhC-CCCEEEEEEEEEC--CCCCHHHHHHHHHHHHH-cC
Confidence 765 5666655433222222222 2110 0111221122221 24788888887777654 56
Q ss_pred CCceEecC
Q 024250 229 TNILWVNP 236 (270)
Q Consensus 229 ~~~l~vsp 236 (270)
.+.+.+.+
T Consensus 336 ~~~v~i~~ 343 (459)
T PRK14338 336 FDKVHIAA 343 (459)
T ss_pred CCEeEEEe
Confidence 56665554
No 162
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=46.92 E-value=1.4e+02 Score=25.88 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHcCCC
Q 024250 91 AIKDEVEDLEKAGIN 105 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~ 105 (270)
.+.+.++...+.|..
T Consensus 111 ~~~~~i~~a~~~G~~ 125 (259)
T cd07939 111 QLRRLVGRAKDRGLF 125 (259)
T ss_pred HHHHHHHHHHHCCCe
Confidence 444445555666654
No 163
>PRK07094 biotin synthase; Provisional
Probab=46.80 E-value=2.1e+02 Score=25.48 Aligned_cols=119 Identities=12% Similarity=0.146 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCCEEEec--c-CccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCc-hhHHHHHHhCC
Q 024250 94 DEVEDLEKAGINVIQID--E-AALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMD 169 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiD--E-P~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~-~~~~~~l~~~~ 169 (270)
++++.+.+.|++.|.|- + |.+. .+...+.++.+.+. . ++ .+|+..|.. .+.+..|.+++
T Consensus 77 ~~~~~~~~~g~~~i~l~gG~~~~~~-------------~~~l~~l~~~i~~~-~-~l--~i~~~~g~~~~e~l~~Lk~aG 139 (323)
T PRK07094 77 ECAKKAYELGYRTIVLQSGEDPYYT-------------DEKIADIIKEIKKE-L-DV--AITLSLGERSYEEYKAWKEAG 139 (323)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCCC-------------HHHHHHHHHHHHcc-C-Cc--eEEEecCCCCHHHHHHHHHcC
Confidence 44666777899876552 2 3221 12333444444332 1 22 334333433 46788999999
Q ss_pred CCEEEEEccCCCc-------------hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCce
Q 024250 170 ADVITIENSRSDE-------------KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNIL 232 (270)
Q Consensus 170 vd~l~ld~~~~~~-------------~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l 232 (270)
++.+++-+...+. +.++.++.....|-.+..|++=+-. -++.+++.+.++.+.+ ++.+.+
T Consensus 140 ~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlp--get~ed~~~~l~~l~~-l~~~~v 212 (323)
T PRK07094 140 ADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLP--GQTLEDLADDILFLKE-LDLDMI 212 (323)
T ss_pred CCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECC--CCCHHHHHHHHHHHHh-CCCCee
Confidence 9998775533221 1112222110123445555554432 3677888887777654 444433
No 164
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=46.74 E-value=89 Score=28.64 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=39.0
Q ss_pred hHHHHHHhCC--CCEEEEEccCCCc----hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHh
Q 024250 160 DIIHSIIDMD--ADVITIENSRSDE----KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKML 224 (270)
Q Consensus 160 ~~~~~l~~~~--vd~l~ld~~~~~~----~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~ 224 (270)
+.++.|.+.+ +|.|.+|.++++. +.++.+++.. .+..|..|+ +-|+|..++.++...
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~-p~~~viaGN-------V~T~e~a~~Li~aGA 172 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAF-PEHTIMAGN-------VVTGEMVEELILSGA 172 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhC-CCCeEEEec-------ccCHHHHHHHHHcCC
Confidence 5677888875 9999999988653 3455666542 256788886 356777776666544
No 165
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.20 E-value=88 Score=27.77 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=17.8
Q ss_pred CCc-hhHHHHHHhCCCCEEEEEc
Q 024250 156 SNF-NDIIHSIIDMDADVITIEN 177 (270)
Q Consensus 156 g~~-~~~~~~l~~~~vd~l~ld~ 177 (270)
|+. .+.++.+.++++|++++=.
T Consensus 239 GGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 239 GGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred CCCCHHHHHHHHHcCCCEEEECh
Confidence 444 3678899999999999876
No 166
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=46.07 E-value=1.4e+02 Score=26.02 Aligned_cols=22 Identities=14% Similarity=0.412 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCCEEEeccCc
Q 024250 92 IKDEVEDLEKAGINVIQIDEAA 113 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~ 113 (270)
+.+.++.+.++|++.|.|-+..
T Consensus 143 ~~~~~~~~~~~G~d~i~l~DT~ 164 (263)
T cd07943 143 LAEQAKLMESYGADCVYVTDSA 164 (263)
T ss_pred HHHHHHHHHHcCCCEEEEcCCC
Confidence 4444555666777777776643
No 167
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=45.98 E-value=2.3e+02 Score=25.67 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=74.8
Q ss_pred HHHHHHcCCCEEEec----cCccccCCCCC-CccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 96 VEDLEKAGINVIQID----EAALREGLPLR-KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 96 ~~~l~~~G~~~IQiD----EP~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
++.+.++|++++|+- ... +...... ......+-+..++..|++ + +.|=|-=|-... .++.+.-++.
T Consensus 114 L~~~~~~GvR~lgltwn~~N~~-g~g~~~~~~~GLs~~Gk~lV~~~N~L--g----IiiDlSH~s~kt--~~Dvl~~s~~ 184 (313)
T COG2355 114 LELFHALGVRSLGLTWNRDNLF-GDGCYERTGGGLTPFGKELVREMNEL--G----IIIDLSHLSDKT--FWDVLDLSKA 184 (313)
T ss_pred HHHHHHhCceEEEeeeccCCcc-cCccCCCCCCCCCHHHHHHHHHHHhc--C----CEEEecccCCcc--HHHHHhccCC
Confidence 556778899998863 111 1111111 113345566667777764 1 222222231111 2233322222
Q ss_pred CEEE--------EEccCC-CchhHHHhhhcccCCCeeeceEecCCCC----CCCCHHHHHHHHHHHhccccCCceEecCC
Q 024250 171 DVIT--------IENSRS-DEKLLSVFREGVKYGAGIGPGVYDIHSP----RIPSTEEIADRINKMLAVLETNILWVNPD 237 (270)
Q Consensus 171 d~l~--------ld~~~~-~~~~l~~l~~~~~~~~~l~~GvVd~~~~----~~e~~e~v~~~i~~~~~~~~~~~l~vsp~ 237 (270)
=.+. +|..++ ..+.++.+.+ .+..|++=.+..... ...|++++++.|....+.+|.+.+.+.+|
T Consensus 185 PviaSHSN~~al~~h~RNl~D~qlkaI~~---~gGvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsD 261 (313)
T COG2355 185 PVVASHSNARALVDHPRNLSDEQLKAIAE---TGGVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSD 261 (313)
T ss_pred ceEEecCCchhccCCCCCCCHHHHHHHHh---cCCEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEeccc
Confidence 2222 233332 2345677776 466666655655433 46799999999999999999999999888
Q ss_pred CCCCCC
Q 024250 238 CGLKTR 243 (270)
Q Consensus 238 Cgl~~~ 243 (270)
--=.+.
T Consensus 262 f~g~~~ 267 (313)
T COG2355 262 FDGGTG 267 (313)
T ss_pred ccCCCC
Confidence 544444
No 168
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=45.82 E-value=2.7e+02 Score=26.40 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-Cc-hhHHHHHHhC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NF-NDIIHSIIDM 168 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~-~~~~~~l~~~ 168 (270)
.+.++++.|.+.|++.|.|-...+....+... . .. ..+.++.+.. +....++.+++... ++ .+.++.+.+.
T Consensus 182 ~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~-~-~~----l~~Ll~~l~~-~~~~~rir~~~~~p~~l~~ell~~~~~~ 254 (445)
T PRK14340 182 SVLDEVRALAEAGYREITLLGQNVNSYSDPEA-G-AD----FAGLLDAVSR-AAPEMRIRFTTSHPKDISESLVRTIAAR 254 (445)
T ss_pred HHHHHHHHHHHCCCeEEEEeecccchhhccCC-C-ch----HHHHHHHHhh-cCCCcEEEEccCChhhcCHHHHHHHHhC
Confidence 34456777888899877664333332111100 0 01 1233333322 22223444443221 22 3567777776
Q ss_pred --CCCEEEEEccCCCchhHHHh
Q 024250 169 --DADVITIENSRSDEKLLSVF 188 (270)
Q Consensus 169 --~vd~l~ld~~~~~~~~l~~l 188 (270)
++..+++-.-+.+.+.|+..
T Consensus 255 ~~g~~~l~iglQSgsd~vLk~m 276 (445)
T PRK14340 255 PNICNHIHLPVQSGSSRMLRRM 276 (445)
T ss_pred CCCCCeEEECCCcCCHHHHHhc
Confidence 47778877655444334333
No 169
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=45.68 E-value=37 Score=30.76 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHhccccCCceEecCCCC
Q 024250 208 PRIPSTEEIADRINKMLAVLETNILWVNPDCG 239 (270)
Q Consensus 208 ~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cg 239 (270)
..+.|||+|+++|++..+..+.+.+++.+.+|
T Consensus 283 ~lvGtPe~V~e~i~~~~~~~G~d~~~l~~~~~ 314 (337)
T TIGR03858 283 LYVGSPETVAEKIADTIETLGLDRFMLHYSVG 314 (337)
T ss_pred eeeeCHHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 35789999999999987666889999998765
No 170
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=45.43 E-value=1.7e+02 Score=25.78 Aligned_cols=76 Identities=12% Similarity=0.182 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCC----CccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc--CCchhHHHHH
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLR----KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY--SNFNDIIHSI 165 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~--g~~~~~~~~l 165 (270)
+.+.++.+.++|++.|.|.= .+...... ..++ +.+.+.++.+-+..+ .++.+-+-. .+..++...+
T Consensus 104 ~~~~a~~~~~~G~d~iElN~--~cP~~~~~g~~~~~~~----~~~~eiv~~vr~~~~--~Pv~vKl~~~~~~~~~~a~~~ 175 (296)
T cd04740 104 FVEVAEKLADAGADAIELNI--SCPNVKGGGMAFGTDP----EAVAEIVKAVKKATD--VPVIVKLTPNVTDIVEIARAA 175 (296)
T ss_pred HHHHHHHHHHcCCCEEEEEC--CCCCCCCCcccccCCH----HHHHHHHHHHHhccC--CCEEEEeCCCchhHHHHHHHH
Confidence 33445566778999988871 11111000 0122 223333333333222 334444321 1233556678
Q ss_pred HhCCCCEEEE
Q 024250 166 IDMDADVITI 175 (270)
Q Consensus 166 ~~~~vd~l~l 175 (270)
.+.++|++.+
T Consensus 176 ~~~G~d~i~~ 185 (296)
T cd04740 176 EEAGADGLTL 185 (296)
T ss_pred HHcCCCEEEE
Confidence 8899999876
No 171
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=45.37 E-value=1.5e+02 Score=23.37 Aligned_cols=102 Identities=10% Similarity=0.094 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHH----HHHH
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDII----HSII 166 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~----~~l~ 166 (270)
...+.++.+.+.|++.|++..+.....-.... .+ +.+....... +.++.+|.+..+..+.+ ..+.
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~ 81 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETD-DK--------EVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAAR 81 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCc-cc--------cHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHH
Confidence 33455666778899999999877654211100 00 1122222222 24567888765544444 3778
Q ss_pred hCCCCEEEEEccCCC-----chhHHHhhhcccCCCeeeceEec
Q 024250 167 DMDADVITIENSRSD-----EKLLSVFREGVKYGAGIGPGVYD 204 (270)
Q Consensus 167 ~~~vd~l~ld~~~~~-----~~~l~~l~~~~~~~~~l~~GvVd 204 (270)
+.++|++.+...... .+.++.+++.. .+..+...+.+
T Consensus 82 ~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~ 123 (200)
T cd04722 82 AAGADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSP 123 (200)
T ss_pred HcCCCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECC
Confidence 899999999876631 33445555431 14556666543
No 172
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=45.36 E-value=33 Score=30.85 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceEecCCCCCCCCCHhHHHHHHHHH
Q 024250 209 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNM 255 (270)
Q Consensus 209 ~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l 255 (270)
-++|||+|.++|++..+..+.+++++.+.. .+.+...+.++.+
T Consensus 278 iiGspe~v~~~l~~~~~~~G~d~~~~~~~~----~~~~~~~~s~~l~ 320 (323)
T TIGR03558 278 IVGSPETVREQLEALAERTGADELMVTTPI----YDHEARLRSYELL 320 (323)
T ss_pred EEcCHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHH
Confidence 468999999999998877788999988762 3455334444443
No 173
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=44.82 E-value=2.1e+02 Score=24.95 Aligned_cols=45 Identities=7% Similarity=0.214 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEEEEEccC
Q 024250 130 DWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIENSR 179 (270)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l~ld~~~ 179 (270)
+++.+.++.+-+. +..+.++|+ |-.. ...+.|.+. +|.+.+|+..
T Consensus 99 e~~~~~~~~ake~---Gl~~~l~Tn-G~~~~~~~~~l~~~-~D~v~~DlK~ 144 (260)
T COG1180 99 EFALDLLRAAKER---GLHVALDTN-GFLPPEALEELLPL-LDAVLLDLKA 144 (260)
T ss_pred HHHHHHHHHHHHC---CCcEEEEcC-CCCCHHHHHHHHhh-cCeEEEeecc
Confidence 4444444444332 356778888 5443 334566666 9999999965
No 174
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=44.77 E-value=1.5e+02 Score=26.07 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024250 250 PALSNMVAAAKLLRTQL 266 (270)
Q Consensus 250 ~kL~~l~~~a~~~~~~~ 266 (270)
++|..+.+..+.+++++
T Consensus 256 ~~l~~~~~~v~~~~~~~ 272 (275)
T cd07937 256 EKLEEISEYFEEVRKKY 272 (275)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555555555444
No 175
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=44.75 E-value=2.4e+02 Score=25.60 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEeccC---ccccCCCCC--------CccH---HHHHHHHHHHHHHHhcCCCCCceE
Q 024250 84 TCYQIALAIKDEVEDLEKAGINVIQIDEA---ALREGLPLR--------KSEH---AFYLDWAVHSFRITNCGVQDTTQI 149 (270)
Q Consensus 84 l~~~l~~~~~~~~~~l~~~G~~~IQiDEP---~l~~~l~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~i 149 (270)
-++.+.+.+.+-++.+.++|++.|+|.-- .|...++.. .+.. -++..++++++++. ++.+ .+
T Consensus 146 eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~---vg~d-~v 221 (338)
T cd02933 146 EIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEA---IGAD-RV 221 (338)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHH---hCCC-ce
Confidence 35678888888888899999999999832 122222211 0112 12333444444443 3322 25
Q ss_pred EEeecc---------CCc-h---hHHHHHHhCCCCEEEEEc
Q 024250 150 HTHMCY---------SNF-N---DIIHSIIDMDADVITIEN 177 (270)
Q Consensus 150 ~lH~c~---------g~~-~---~~~~~l~~~~vd~l~ld~ 177 (270)
++-+.. |.. . .+.+.|.+.++|.+++-.
T Consensus 222 ~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~ 262 (338)
T cd02933 222 GIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVE 262 (338)
T ss_pred EEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence 555432 111 1 455677778899999854
No 176
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=44.53 E-value=1.9e+02 Score=24.40 Aligned_cols=97 Identities=7% Similarity=-0.010 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccCCch-hHHHHHHhCCCCEEEEEccCCCc---------------hhHHHhhhccc
Q 024250 130 DWAVHSFRITNCGVQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIENSRSDE---------------KLLSVFREGVK 193 (270)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~-~~~~~l~~~~vd~l~ld~~~~~~---------------~~l~~l~~~~~ 193 (270)
+++.+.++.+-+ .+..+.++|| |.+. +.+..++. -+|.+.+|+...+. ++++.+.+. +
T Consensus 54 ~fl~~l~~~~k~---~gi~~~leTn-G~~~~~~~~~l~~-~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~-g 127 (213)
T PRK10076 54 EFATRFLQRLRL---WGVSCAIETA-GDAPASKLLPLAK-LCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSE-G 127 (213)
T ss_pred HHHHHHHHHHHH---cCCCEEEECC-CCCCHHHHHHHHH-hcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhC-C
Confidence 344455555422 1355677888 5442 34555554 38999999865321 233333332 1
Q ss_pred CCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecC
Q 024250 194 YGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNP 236 (270)
Q Consensus 194 ~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp 236 (270)
..-.+-.=+|++.|...++.+.+++.+.. ++.+++-+.|
T Consensus 128 ~~v~iR~~vIPg~nd~~e~i~~ia~~l~~----l~~~~~~llp 166 (213)
T PRK10076 128 VNVIPRLPLIPGFTLSRENMQQALDVLIP----LGIKQIHLLP 166 (213)
T ss_pred CcEEEEEEEECCCCCCHHHHHHHHHHHHH----cCCceEEEec
Confidence 11234444566655444455555555543 2334555444
No 177
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=44.43 E-value=42 Score=30.68 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeec
Q 024250 84 TCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMC 154 (270)
Q Consensus 84 l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c 154 (270)
-+.++..+|.++++...++|.++|-+.-=.|+..- ..+++|.+ .|+++++..+. +++||--
T Consensus 126 sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A----~~p~DY~~----VY~~lL~q~~~--PVILHWL 186 (382)
T PF06187_consen 126 SLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVA----RSPDDYLR----VYDRLLSQADE--PVILHWL 186 (382)
T ss_dssp -HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH------SHHHHHH----HHHHHHHH-SS---EEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhh----CCHHHHHH----HHHHHHHHcCC--CEEEEec
Confidence 36788899999999999999999888766665421 14555554 55555555543 5688853
No 178
>PLN02417 dihydrodipicolinate synthase
Probab=44.30 E-value=1.7e+02 Score=25.80 Aligned_cols=80 Identities=13% Similarity=0.033 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHH---HHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIH---SII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~---~l~ 166 (270)
+.++++++.+.+.|++-|.+---+ +....+ +. ++-.+.++.+.+..++.++++.|+..-+..+.++ ...
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~Gst-GE~~~l---s~----~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~ 93 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTT-GEGQLM---SW----DEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGF 93 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccC-cchhhC---CH----HHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHH
Confidence 467778888889999976654211 111111 11 1222233333333333456777765335554443 456
Q ss_pred hCCCCEEEEEc
Q 024250 167 DMDADVITIEN 177 (270)
Q Consensus 167 ~~~vd~l~ld~ 177 (270)
++++|++.+=.
T Consensus 94 ~~Gadav~~~~ 104 (280)
T PLN02417 94 AVGMHAALHIN 104 (280)
T ss_pred HcCCCEEEEcC
Confidence 78999888763
No 179
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=44.02 E-value=2.6e+02 Score=25.79 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh---HHHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~---~~~~l~ 166 (270)
+.+.+.+.++.+.|++.|..||..-.... . ..++-.+.+.++.+++-+.-.....+...++ ++..+ ..+...
T Consensus 146 ~~la~~~~~l~~gGvD~Ikdde~~ge~~~-~---~~eER~~~v~~av~~a~~~TG~~~~y~~nit-~~~~e~i~~a~~a~ 220 (367)
T cd08205 146 EELAELAYELALGGIDLIKDDELLADQPY-A---PFEERVRACMEAVRRANEETGRKTLYAPNIT-GDPDELRRRADRAV 220 (367)
T ss_pred HHHHHHHHHHHhcCCCeeeccccccCccc-C---CHHHHHHHHHHHHHHHHHhhCCcceEEEEcC-CCHHHHHHHHHHHH
Confidence 35556677788899999999987443211 1 1222345555666665432222223334444 44443 345668
Q ss_pred hCCCCEEEEEccC
Q 024250 167 DMDADVITIENSR 179 (270)
Q Consensus 167 ~~~vd~l~ld~~~ 179 (270)
++++|++-+....
T Consensus 221 ~~Gad~vmv~~~~ 233 (367)
T cd08205 221 EAGANALLINPNL 233 (367)
T ss_pred HcCCCEEEEeccc
Confidence 8999999999754
No 180
>PLN02692 alpha-galactosidase
Probab=43.32 E-value=1.3e+02 Score=28.31 Aligned_cols=90 Identities=11% Similarity=0.139 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCC---ccHHHH---HHHHHHHHHHHhcCCCCCceEEEee--
Q 024250 82 HETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRK---SEHAFY---LDWAVHSFRITNCGVQDTTQIHTHM-- 153 (270)
Q Consensus 82 ~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~i~lH~-- 153 (270)
++.+.+.++++.. ..|.++|.++|+||+-......+... .+++.| +....+.++. . +.+.++|+
T Consensus 72 E~~i~~~ad~~~~--~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~--~----GLKfGIy~d~ 143 (412)
T PLN02692 72 EKMIKETADALVS--TGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHS--K----GLKLGIYSDA 143 (412)
T ss_pred HHHHHHHHHHHHh--ccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHH--C----CCceEEEecC
Confidence 3445555554433 34678899999999987653221110 022222 2222223322 1 34556665
Q ss_pred ----ccC----Cc---hhHHHHHHhCCCCEEEEEccC
Q 024250 154 ----CYS----NF---NDIIHSIIDMDADVITIENSR 179 (270)
Q Consensus 154 ----c~g----~~---~~~~~~l~~~~vd~l~ld~~~ 179 (270)
|.+ .+ ..-...+.+-+||.|-+|...
T Consensus 144 G~~tC~~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~ 180 (412)
T PLN02692 144 GYFTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCN 180 (412)
T ss_pred CccccCCCCCCchHHHHHHHHHHHhcCCCEEeccccC
Confidence 521 11 123456789999999999864
No 181
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=43.16 E-value=1e+02 Score=26.64 Aligned_cols=82 Identities=5% Similarity=0.079 Sum_probs=45.7
Q ss_pred ceEEEeeccCCchhHHHHHHhCCCC--EEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHh
Q 024250 147 TQIHTHMCYSNFNDIIHSIIDMDAD--VITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKML 224 (270)
Q Consensus 147 ~~i~lH~c~g~~~~~~~~l~~~~vd--~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~ 224 (270)
.++.||+- +-..++++.|.+.+.. .+-+=...++.+.++.+.+. |-.++++-.-. +.+ .+..++++
T Consensus 125 ~pv~iH~r-~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~~---g~~~S~~~~~~---~~~-----~~~~~~~~ 192 (255)
T PF01026_consen 125 LPVSIHCR-KAHEELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLDL---GCYFSFSGAIT---FKN-----SKKVRELI 192 (255)
T ss_dssp CEEEEEEE-SHHHHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHHT---TEEEEEEGGGG---STT-----SHHHHHHH
T ss_pred CcEEEecC-CcHHHHHHHHHhccccceeEEEecCCCCHHHHHHHHhc---CceEEeccccc---ccc-----cHHHHHHH
Confidence 56899965 6677899999888743 33333333445445555432 33344433211 111 23355666
Q ss_pred ccccCCceEecCCCCC
Q 024250 225 AVLETNILWVNPDCGL 240 (270)
Q Consensus 225 ~~~~~~~l~vsp~Cgl 240 (270)
+.+|.+++++-+|+..
T Consensus 193 ~~ip~drillETD~P~ 208 (255)
T PF01026_consen 193 KAIPLDRILLETDAPY 208 (255)
T ss_dssp HHS-GGGEEEE-BTTS
T ss_pred hcCChhhEEEcCCCCc
Confidence 7789999999999855
No 182
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=42.98 E-value=2.1e+02 Score=25.05 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhH---HHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDI---IHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~---~~~l~ 166 (270)
+.+++.++.+.+.|++-|.+---+ +....++ .++..+ .++.+.+..++++++++++...+..+. .....
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~Gst-GE~~~Lt---~~Er~~----l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGST-GEFYSLT---DEERKE----LLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQ 93 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTT-TTGGGS----HHHHHH----HHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC-cccccCC---HHHHHH----HHHHHHHHccCceEEEecCcchhHHHHHHHHHHHh
Confidence 477778888889999876654211 1111111 122222 222222223334667777664455543 44557
Q ss_pred hCCCCEEEEE
Q 024250 167 DMDADVITIE 176 (270)
Q Consensus 167 ~~~vd~l~ld 176 (270)
++++|++.+=
T Consensus 94 ~~Gad~v~v~ 103 (289)
T PF00701_consen 94 DAGADAVLVI 103 (289)
T ss_dssp HTT-SEEEEE
T ss_pred hcCceEEEEe
Confidence 7999998765
No 183
>PRK09875 putative hydrolase; Provisional
Probab=42.94 E-value=2.5e+02 Score=25.12 Aligned_cols=89 Identities=10% Similarity=0.048 Sum_probs=50.7
Q ss_pred CceEEEeeccCCc-hhHHHHHHhCCC--CEEEEEccCC--CchhHHHhhhcccCCCeeeceEec-CCCCCCCCHHHHHHH
Q 024250 146 TTQIHTHMCYSNF-NDIIHSIIDMDA--DVITIENSRS--DEKLLSVFREGVKYGAGIGPGVYD-IHSPRIPSTEEIADR 219 (270)
Q Consensus 146 ~~~i~lH~c~g~~-~~~~~~l~~~~v--d~l~ld~~~~--~~~~l~~l~~~~~~~~~l~~GvVd-~~~~~~e~~e~v~~~ 219 (270)
+.+|.+|+..|+- .+.++.+.+.++ +.+-+..... +.+....+.+. | .+++.-. ++.... +.++..+.
T Consensus 152 G~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~---G--~~l~fD~~g~~~~~-pd~~r~~~ 225 (292)
T PRK09875 152 GRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDL---G--AYVQFDTIGKNSYY-PDEKRIAM 225 (292)
T ss_pred CCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHc---C--CEEEeccCCCcccC-CHHHHHHH
Confidence 4678999887743 356788888888 7787777542 33333444332 3 2333211 111111 22344556
Q ss_pred HHHHhcccc-CCceEecCCCCCC
Q 024250 220 INKMLAVLE-TNILWVNPDCGLK 241 (270)
Q Consensus 220 i~~~~~~~~-~~~l~vsp~Cgl~ 241 (270)
|..+.+. | .+|+++|.|=+-.
T Consensus 226 i~~L~~~-Gy~drilLS~D~~~~ 247 (292)
T PRK09875 226 LHALRDR-GLLNRVMLSMDITRR 247 (292)
T ss_pred HHHHHhc-CCCCeEEEeCCCCCc
Confidence 6665543 5 6899999887655
No 184
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=42.88 E-value=1.6e+02 Score=31.63 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee--ccCCchhHHHHHHh
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM--CYSNFNDIIHSIID 167 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~--c~g~~~~~~~~l~~ 167 (270)
+.|.+.++++.++|++.|.|-+.+=.. .|... ...+.++++.+ + .++++|+ -+|......=...+
T Consensus 689 ~y~~~~ak~l~~~Gad~I~ikDt~Gll-------~P~~~-~~Lv~~lk~~~---~--~pi~~H~Hdt~Gla~an~laA~e 755 (1143)
T TIGR01235 689 KYYTNLAVELEKAGAHILGIKDMAGLL-------KPAAA-KLLIKALREKT---D--LPIHFHTHDTSGIAVASMLAAVE 755 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCCc-------CHHHH-HHHHHHHHHhc---C--CeEEEEECCCCCcHHHHHHHHHH
Confidence 355566777888999999998864331 23222 22333444333 2 3455554 33433222333467
Q ss_pred CCCCEEEEEc
Q 024250 168 MDADVITIEN 177 (270)
Q Consensus 168 ~~vd~l~ld~ 177 (270)
+++|.++.=.
T Consensus 756 aGad~vD~ai 765 (1143)
T TIGR01235 756 AGVDVVDVAV 765 (1143)
T ss_pred hCCCEEEecc
Confidence 8888876554
No 185
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=42.58 E-value=1.3e+02 Score=25.44 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=10.6
Q ss_pred HHHHHHHHcCCCEEEeccC
Q 024250 94 DEVEDLEKAGINVIQIDEA 112 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP 112 (270)
+.++.+.++|++.|.|-+-
T Consensus 141 ~~~~~~~~~g~~~i~l~Dt 159 (237)
T PF00682_consen 141 ELAEALAEAGADIIYLADT 159 (237)
T ss_dssp HHHHHHHHHT-SEEEEEET
T ss_pred HHHHHHHHcCCeEEEeeCc
Confidence 3345555567777766664
No 186
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=42.08 E-value=3e+02 Score=25.94 Aligned_cols=95 Identities=8% Similarity=0.096 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch---hHHHHHHh
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIID 167 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~---~~~~~l~~ 167 (270)
.+.+.+.++...|+|+|.=||+...... . .+++-...+.++++++.+.-.....-..+++ ++.. +..+.+.+
T Consensus 161 ~~a~~~~~~~~GGvD~IKDDE~l~~q~~--~--p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~~~~ 235 (412)
T TIGR03326 161 EHAKVAYELWSGGVDLLKDDENLTSQPF--N--RFEERVEKLYKVRDKVEAETGERKEYLANIT-APVREMERRAELVAD 235 (412)
T ss_pred HHHHHHHHHHhcCCceeecCCCCCCCCC--c--cHHHHHHHHHHHHHHHHHHhCCcceEEEEec-CCHHHHHHHHHHHHH
Confidence 3444456677789999999998543211 1 2233355666777776554332222344555 4444 34556788
Q ss_pred CCCCEEEEEccCCCchhHHHhhh
Q 024250 168 MDADVITIENSRSDEKLLSVFRE 190 (270)
Q Consensus 168 ~~vd~l~ld~~~~~~~~l~~l~~ 190 (270)
.+.+++-+++...+...+..+++
T Consensus 236 ~G~~~~mv~~~~~G~~~l~~l~~ 258 (412)
T TIGR03326 236 LGGQYVMVDVVVCGWSALQYIRE 258 (412)
T ss_pred hCCCeEEEEeeccchHHHHHHHH
Confidence 99999999986645555555554
No 187
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=41.99 E-value=2.2e+02 Score=24.73 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=49.7
Q ss_pred HHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc-CCch--hHHHHHHhCCCCE
Q 024250 97 EDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY-SNFN--DIIHSIIDMDADV 172 (270)
Q Consensus 97 ~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~-g~~~--~~~~~l~~~~vd~ 172 (270)
+...+.|++- +++|=-+-. .. .+...+.+.++.+.+- ++ .|. |..+ +-...++.+++|-
T Consensus 37 ~~Y~e~GADElvFlDItAs~-------~g----r~~~~~vv~r~A~~vf--iP----ltVGGGI~s~eD~~~ll~aGADK 99 (256)
T COG0107 37 KRYNEEGADELVFLDITASS-------EG----RETMLDVVERVAEQVF--IP----LTVGGGIRSVEDARKLLRAGADK 99 (256)
T ss_pred HHHHHcCCCeEEEEeccccc-------cc----chhHHHHHHHHHhhce--ee----eEecCCcCCHHHHHHHHHcCCCe
Confidence 3445679985 777732211 11 2334556666655442 22 232 4333 2356899999999
Q ss_pred EEEEccC-CCchhHHHhhhcccCCCeeeceEecC
Q 024250 173 ITIENSR-SDEKLLSVFREGVKYGAGIGPGVYDI 205 (270)
Q Consensus 173 l~ld~~~-~~~~~l~~l~~~~~~~~~l~~GvVd~ 205 (270)
+|+.... .+++.+....+..+ .+-++++ ||.
T Consensus 100 VSINsaAv~~p~lI~~~a~~FG-sQciVva-IDa 131 (256)
T COG0107 100 VSINSAAVKDPELITEAADRFG-SQCIVVA-IDA 131 (256)
T ss_pred eeeChhHhcChHHHHHHHHHhC-CceEEEE-EEe
Confidence 9999854 45666666665311 2344444 344
No 188
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=41.78 E-value=1.6e+02 Score=27.74 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
...+.+++|.++|+++|.||- +. . .. +...+.++.+-+..+. ..+++..| ... +....+.++++
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~---a~---g---~~----~~~~~~v~~ik~~~p~-~~vi~g~V-~T~-e~a~~l~~aGa 216 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDS---AH---G---HS----TRIIELVKKIKTKYPN-LDLIAGNI-VTK-EAALDLISVGA 216 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEEC---CC---C---CC----hhHHHHHHHHHhhCCC-CcEEEEec-CCH-HHHHHHHHcCC
Confidence 345778999999999999983 11 0 10 1122333333333332 34555555 334 34557889999
Q ss_pred CEEEEEc
Q 024250 171 DVITIEN 177 (270)
Q Consensus 171 d~l~ld~ 177 (270)
|++.+=+
T Consensus 217 D~I~vG~ 223 (404)
T PRK06843 217 DCLKVGI 223 (404)
T ss_pred CEEEECC
Confidence 9998643
No 189
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.71 E-value=1.3e+02 Score=26.47 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=16.6
Q ss_pred CCc-hhHHHHHHhCCCCEEEEE
Q 024250 156 SNF-NDIIHSIIDMDADVITIE 176 (270)
Q Consensus 156 g~~-~~~~~~l~~~~vd~l~ld 176 (270)
|+. .+.++.+.++++|++++=
T Consensus 234 GGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 234 GGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred CCCCHHHHHHHHHcCCCEEEEc
Confidence 444 367889999999999873
No 190
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=40.02 E-value=1.1e+02 Score=26.05 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCC
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 170 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~v 170 (270)
...+++++|.++|+++|-+|--.= .+ |...++. .+.+ .+.+..+.+.-| .++.+.+ ...++++
T Consensus 86 ptlkeVd~L~~~Ga~IIA~DaT~R-----~R---P~~~~~~---~i~~----~k~~~~l~MAD~-St~ee~l-~a~~~G~ 148 (229)
T COG3010 86 PTLKEVDALAEAGADIIAFDATDR-----PR---PDGDLEE---LIAR----IKYPGQLAMADC-STFEEGL-NAHKLGF 148 (229)
T ss_pred ccHHHHHHHHHCCCcEEEeecccC-----CC---CcchHHH---HHHH----hhcCCcEEEecc-CCHHHHH-HHHHcCC
Confidence 456678999999999999995211 11 1111111 2221 222234567778 5665543 3467888
Q ss_pred CEEEEEc
Q 024250 171 DVITIEN 177 (270)
Q Consensus 171 d~l~ld~ 177 (270)
|.++==+
T Consensus 149 D~IGTTL 155 (229)
T COG3010 149 DIIGTTL 155 (229)
T ss_pred cEEeccc
Confidence 8887554
No 191
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=39.99 E-value=3.1e+02 Score=25.44 Aligned_cols=94 Identities=7% Similarity=0.083 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch---hHHHHHHhC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDM 168 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~---~~~~~l~~~ 168 (270)
+.+.+.++...|+|+|.=||+...... . .+++-...+.++++++.+.-.....-..+++ |+.. +..+.+.+.
T Consensus 145 ~a~~~y~~~~GG~D~IKDDE~l~~q~~--~--p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~~~~~ 219 (366)
T cd08148 145 TAEAAYAAALGGLDLIKDDETLTDQPF--C--PLRDRITEVAAALDRVQEETGEKKLYAVNVT-AGTFEIIERAERALEL 219 (366)
T ss_pred HHHHHHHHHhCCCCccccccccCCCCC--C--cHHHHHHHHHHHHHHHHHhhCCcceEEEEcc-CCHHHHHHHHHHHHHh
Confidence 334455566789999999997543211 1 2233355667777776654332222344555 5544 355677899
Q ss_pred CCCEEEEEccCCCchhHHHhhh
Q 024250 169 DADVITIENSRSDEKLLSVFRE 190 (270)
Q Consensus 169 ~vd~l~ld~~~~~~~~l~~l~~ 190 (270)
+.+++-+++...+...+..+.+
T Consensus 220 G~~~~mv~~~~~G~~~l~~l~~ 241 (366)
T cd08148 220 GANMLMVDVLTAGFSALQALAE 241 (366)
T ss_pred CCCEEEEeccccchHHHHHHHH
Confidence 9999999987655666666665
No 192
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=39.89 E-value=1.7e+02 Score=24.55 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=50.1
Q ss_pred cHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCc
Q 024250 44 TVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKS 123 (270)
Q Consensus 44 ~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~ 123 (270)
-.++++..++..+.| ++| +.+. +|.+..-+ ..-..+++++|.++||++|-+|--. ..++.
T Consensus 20 ~~~dI~aik~~v~lP----IIG------i~K~-~y~~~~V~----ITPT~~ev~~l~~aGadIIAlDaT~-----R~Rp~ 79 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLP----IIG------IIKR-DYPDSDVY----ITPTLKEVDALAEAGADIIALDATD-----RPRPE 79 (192)
T ss_dssp SHHHHHHHHTTB-S-----EEE------E-B--SBTTSS------BS-SHHHHHHHHHCT-SEEEEE-SS-----SS-SS
T ss_pred CHHHHHHHHHhcCCC----EEE------EEec-cCCCCCeE----ECCCHHHHHHHHHcCCCEEEEecCC-----CCCCc
Confidence 357888888776666 445 2222 22211111 1122345788999999999999511 11221
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEEEEc
Q 024250 124 EHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 177 (270)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ld~ 177 (270)
. ++..+..+++-. .+.+.-| .++.+. ....++++|.++-=+
T Consensus 80 ~----l~~li~~i~~~~-------~l~MADi-st~ee~-~~A~~~G~D~I~TTL 120 (192)
T PF04131_consen 80 T----LEELIREIKEKY-------QLVMADI-STLEEA-INAAELGFDIIGTTL 120 (192)
T ss_dssp -----HHHHHHHHHHCT-------SEEEEE--SSHHHH-HHHHHTT-SEEE-TT
T ss_pred C----HHHHHHHHHHhC-------cEEeeec-CCHHHH-HHHHHcCCCEEEccc
Confidence 2 233333443321 3567788 567543 356889999998765
No 193
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=39.69 E-value=2.8e+02 Score=24.78 Aligned_cols=123 Identities=15% Similarity=0.047 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh---HHHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~---~~~~l~ 166 (270)
+++++.++.+.+.|++-|.+-=- -...... +.++ . .+.++.+.+...+.++++.+++..+..+ ......
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~Gt-tGE~~~L---s~eE-r---~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~ 96 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGT-TGESPTL---TLEE-R---KEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAE 96 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCC-Cccchhc---CHHH-H---HHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHH
Confidence 47888889999999987655310 0000111 1122 1 2223333333333456788888544554 344567
Q ss_pred hCCCCEEEEEcc---CCC-chhHHHhhhcc-cCCCeeeceEecCCCCCCCCHHHHHHHH
Q 024250 167 DMDADVITIENS---RSD-EKLLSVFREGV-KYGAGIGPGVYDIHSPRIPSTEEIADRI 220 (270)
Q Consensus 167 ~~~vd~l~ld~~---~~~-~~~l~~l~~~~-~~~~~l~~GvVd~~~~~~e~~e~v~~~i 220 (270)
++++|++.+=-. ..+ .+..+.++... ..+-.+.+=+++.++-..-++|.+.+..
T Consensus 97 ~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la 155 (299)
T COG0329 97 KLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLA 155 (299)
T ss_pred hcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 899999987642 122 23344444321 1133355555666665555555554443
No 194
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=39.29 E-value=2e+02 Score=23.01 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCC-CceEEEeeccCC----ch---hH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD-TTQIHTHMCYSN----FN---DI 161 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~lH~c~g~----~~---~~ 161 (270)
+.+.+.++.+.+.|++.|.+.- ...+ ...+. .++ .+++++++..++ .. ..
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g---------------~~i~----~~~~~---~~~~~~~v~~~v~~~~~~~~~~~~~~~ 70 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP---------------GYVR----LAADA---LAGSDVPVIVVVGFPTGLTTTEVKVAE 70 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH---------------HHHH----HHHHH---hCCCCCeEEEEecCCCCCCcHHHHHHH
Confidence 3566667778888998766652 1112 22222 222 355677776544 33 34
Q ss_pred HHHHHhCCCCEEEEEccC---CC---chhHHHhhhcc---cCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCce
Q 024250 162 IHSIIDMDADVITIENSR---SD---EKLLSVFREGV---KYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNIL 232 (270)
Q Consensus 162 ~~~l~~~~vd~l~ld~~~---~~---~~~l~~l~~~~---~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l 232 (270)
.....++++|++.+-... .+ ....+.+++.. +.+..+.+.+++... -+++++.+..+.+. .. +-.
T Consensus 71 a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~---~~~~~~~~~~~~~~-~~--g~~ 144 (201)
T cd00945 71 VEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL---KTADEIAKAARIAA-EA--GAD 144 (201)
T ss_pred HHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC---CCHHHHHHHHHHHH-Hh--CCC
Confidence 456788999999885311 11 12233333221 125567777776655 46777766655442 22 334
Q ss_pred EecCCCC
Q 024250 233 WVNPDCG 239 (270)
Q Consensus 233 ~vsp~Cg 239 (270)
.|..++|
T Consensus 145 ~iK~~~~ 151 (201)
T cd00945 145 FIKTSTG 151 (201)
T ss_pred EEEeCCC
Confidence 4545444
No 195
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=38.95 E-value=2.2e+02 Score=23.34 Aligned_cols=101 Identities=19% Similarity=0.207 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 93 KDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
.+.++.+.+.|+++||++.= ... ..+.++.+.+..+ .+.++..+.. ..+.++...+++.|.
T Consensus 19 ~~~~~~l~~~G~~~vev~~~---------~~~-------~~~~i~~l~~~~~-~~~iGag~v~--~~~~~~~a~~~Ga~~ 79 (190)
T cd00452 19 LALAEALIEGGIRAIEITLR---------TPG-------ALEAIRALRKEFP-EALIGAGTVL--TPEQADAAIAAGAQF 79 (190)
T ss_pred HHHHHHHHHCCCCEEEEeCC---------Chh-------HHHHHHHHHHHCC-CCEEEEEeCC--CHHHHHHHHHcCCCE
Confidence 34466788899999999831 101 1224444433333 1333322221 134678889999999
Q ss_pred EEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhc
Q 024250 173 ITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 225 (270)
Q Consensus 173 l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~ 225 (270)
++..-. +.+..+..+.. +..+.+|+ .|++++....+...+
T Consensus 80 i~~p~~--~~~~~~~~~~~---~~~~i~gv--------~t~~e~~~A~~~Gad 119 (190)
T cd00452 80 IVSPGL--DPEVVKAANRA---GIPLLPGV--------ATPTEIMQALELGAD 119 (190)
T ss_pred EEcCCC--CHHHHHHHHHc---CCcEECCc--------CCHHHHHHHHHCCCC
Confidence 986532 33333333332 34455554 477777665544333
No 196
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=38.77 E-value=41 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=17.0
Q ss_pred ceEEEeeccCCchh-HHHHHHhCCCCEE
Q 024250 147 TQIHTHMCYSNFND-IIHSIIDMDADVI 173 (270)
Q Consensus 147 ~~i~lH~c~g~~~~-~~~~l~~~~vd~l 173 (270)
..++||.| |+.++ .+....+.++..+
T Consensus 102 ~~vgLHaC-G~Ls~~~l~~~~~~~~~~l 128 (141)
T PF13679_consen 102 ILVGLHAC-GDLSDRALRLFIRPNARFL 128 (141)
T ss_pred EEEEeecc-cchHHHHHHHHHHcCCCEE
Confidence 67899999 88864 4444455445544
No 197
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=38.73 E-value=1e+02 Score=27.25 Aligned_cols=81 Identities=11% Similarity=0.028 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhc---CCCCCceEEEeeccCCch---hHHHHHH
Q 024250 93 KDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNC---GVQDTTQIHTHMCYSNFN---DIIHSII 166 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~lH~c~g~~~---~~~~~l~ 166 (270)
.++.+++.++|+|+|.++=..-....... +...-++.+.+..+++.+ .+..++ ++-|+.|... +.--.+.
T Consensus 160 ~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga--~~~~sl~~a~~~~~~i~~aa~~v~~di--i~l~hGGPI~~p~D~~~~l~ 235 (268)
T PF09370_consen 160 EEQARAMAEAGADIIVAHMGLTTGGSIGA--KTALSLEEAAERIQEIFDAARAVNPDI--IVLCHGGPIATPEDAQYVLR 235 (268)
T ss_dssp HHHHHHHHHHT-SEEEEE-SS------------S--HHHHHHHHHHHHHHHHCC-TT---EEEEECTTB-SHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCCccCCCCcCc--cccCCHHHHHHHHHHHHHHHHHhCCCe--EEEEeCCCCCCHHHHHHHHh
Confidence 45688899999999988854333221100 001113444444444433 343232 3323345443 3333455
Q ss_pred hCC-CCEEEEEc
Q 024250 167 DMD-ADVITIEN 177 (270)
Q Consensus 167 ~~~-vd~l~ld~ 177 (270)
+++ ++++.--+
T Consensus 236 ~t~~~~Gf~G~S 247 (268)
T PF09370_consen 236 NTKGIHGFIGAS 247 (268)
T ss_dssp H-TTEEEEEEST
T ss_pred cCCCCCEEeccc
Confidence 566 66665443
No 198
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=38.64 E-value=2.3e+02 Score=23.44 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=42.1
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT 174 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ 174 (270)
.++.+.++|+++||+-.-..+. +.-+ .+.+.+ +.+.+.... ..+.+ +--.+...+.+...++++|+++
T Consensus 11 d~~~a~~~Gvd~ig~i~~~~s~----R~v~----~~~a~~-l~~~~~~~~--~~V~v-~vn~~~~~i~~ia~~~~~d~Vq 78 (203)
T cd00405 11 DALAAAEAGADAIGFIFAPKSP----RYVS----PEQARE-IVAALPPFV--KRVGV-FVNEDLEEILEIAEELGLDVVQ 78 (203)
T ss_pred HHHHHHHcCCCEEEEecCCCCC----CCCC----HHHHHH-HHHhCCCCC--cEEEE-EeCCCHHHHHHHHHhcCCCEEE
Confidence 4666778999999997522221 1001 222222 222222200 12232 1213455666777889999999
Q ss_pred EEccCCCchhHHHhhh
Q 024250 175 IENSRSDEKLLSVFRE 190 (270)
Q Consensus 175 ld~~~~~~~~l~~l~~ 190 (270)
+--.. +.+....+++
T Consensus 79 lhg~e-~~~~~~~l~~ 93 (203)
T cd00405 79 LHGDE-SPEYCAQLRA 93 (203)
T ss_pred ECCCC-CHHHHHHHHh
Confidence 86543 2333444443
No 199
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=38.52 E-value=4.5e+02 Score=26.87 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT 174 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ 174 (270)
.++++.+.|+++||+-|+.+.. .++.+.+ ..+..+++.. ++.++|| ++ .+...++++| +|
T Consensus 24 ~l~~~l~~g~~~iqlR~K~~~~---------~~~~~~a-~~l~~l~~~~--~~~liin---d~----~~la~~~~~d-VH 83 (755)
T PRK09517 24 IVDSAISGGVSVVQLRDKNAGV---------EDVRAAA-KELKELCDAR--GVALVVN---DR----LDVAVELGLH-VH 83 (755)
T ss_pred HHHHHHhcCCCEEEEeCCCCCH---------HHHHHHH-HHHHHHHHHh--CCeEEEe---Ch----HHHHHHcCCC-ee
Confidence 4455667899999999987652 2222322 2333333322 2455665 22 3566788888 88
Q ss_pred EEcc
Q 024250 175 IENS 178 (270)
Q Consensus 175 ld~~ 178 (270)
+-..
T Consensus 84 lg~~ 87 (755)
T PRK09517 84 IGQG 87 (755)
T ss_pred cCCC
Confidence 7754
No 200
>PRK06256 biotin synthase; Validated
Probab=38.18 E-value=3e+02 Score=24.71 Aligned_cols=128 Identities=9% Similarity=0.035 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCc-hhHHHHHHhC
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDM 168 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~-~~~~~~l~~~ 168 (270)
+.+.++++.+.+.|+..+.+-- + +-... . ...+.+.+.++.+-+.. .+.++++.|-. .+.+..|.++
T Consensus 94 eeI~~~~~~~~~~g~~~~~l~~---~-g~~p~--~--~~~~~~~e~i~~i~~~~----~i~~~~~~g~l~~e~l~~Lkea 161 (336)
T PRK06256 94 EELIEAAKEAIEEGAGTFCIVA---S-GRGPS--G--KEVDQVVEAVKAIKEET----DLEICACLGLLTEEQAERLKEA 161 (336)
T ss_pred HHHHHHHHHHHHCCCCEEEEEe---c-CCCCC--c--hHHHHHHHHHHHHHhcC----CCcEEecCCcCCHHHHHHHHHh
Confidence 3455556677788986544321 0 11000 1 11234445555543321 12344454544 3678889999
Q ss_pred CCCEEEEEccCCCc-------------hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEe
Q 024250 169 DADVITIENSRSDE-------------KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWV 234 (270)
Q Consensus 169 ~vd~l~ld~~~~~~-------------~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~v 234 (270)
+++.+++.+.. +. +.++.++..-..|-.+..|++-+. .|+.+++.+.++.+. .++.+.+.+
T Consensus 162 G~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl---gEt~ed~~~~~~~l~-~l~~~~v~i 235 (336)
T PRK06256 162 GVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM---GESLEDRVEHAFFLK-ELDADSIPI 235 (336)
T ss_pred CCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC---CCCHHHHHHHHHHHH-hCCCCEEee
Confidence 99998874322 11 111222211012445666665553 488888888887664 556555443
No 201
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=37.56 E-value=93 Score=30.45 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=27.3
Q ss_pred EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc----CCchhHHHHH
Q 024250 107 IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY----SNFNDIIHSI 165 (270)
Q Consensus 107 IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~----g~~~~~~~~l 165 (270)
..+|||.-..++ .+.+ ++..+.++.+.+.-+..+++|+|- ||+...++.|
T Consensus 194 ~~~d~~~~~~~v-----tp~~----ii~~l~~~~~~lg~ph~iH~h~nnlg~pgn~~~t~~t~ 247 (541)
T cd01304 194 LSLDDPVPYFDI-----TPRE----ILKGLAEANEELGLPHSIHVHCNNLGVPGNYETTLETM 247 (541)
T ss_pred ccccCCCCCCCC-----CHHH----HHHHHHHHHHhcCCceEEEEccccCCCCCcHHHHHHHH
Confidence 378888765444 2333 334444444545434678889762 5665444443
No 202
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=37.16 E-value=2.1e+02 Score=26.37 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=4.0
Q ss_pred HhCCCCEEE
Q 024250 166 IDMDADVIT 174 (270)
Q Consensus 166 ~~~~vd~l~ 174 (270)
++.+++.++
T Consensus 263 ~~aGa~~vd 271 (347)
T PLN02746 263 LQMGISTVD 271 (347)
T ss_pred HHhCCCEEE
Confidence 344444433
No 203
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.67 E-value=4.1e+02 Score=25.82 Aligned_cols=167 Identities=10% Similarity=0.100 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccc-cCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-Cc-hhHHHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALR-EGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NF-NDIIHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~-~~~~~~l~ 166 (270)
+.+.++++.|.+.|++.|.|-...+. ...+.. +.. ....+.++.+.+ ++ -..+.+.++.. ++ .+.++.+.
T Consensus 244 e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~--~~~---~~l~~Ll~~I~~-~~-i~~ir~~s~~P~~i~deli~~m~ 316 (509)
T PRK14327 244 EDIIQEVRHLARQGYKEITLLGQNVNAYGKDFE--DIE---YGLGDLMDEIRK-ID-IPRVRFTTSHPRDFDDHLIEVLA 316 (509)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeeccccCccccc--ccc---hHHHHHHHHHHh-CC-CceEEEeecCcccCCHHHHHHHH
Confidence 35556677788889987665444443 221111 100 011223333322 21 11233333321 22 25777888
Q ss_pred hCC--CCEEEEEccCCCchhHHHh----------------hhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhcccc
Q 024250 167 DMD--ADVITIENSRSDEKLLSVF----------------REGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 228 (270)
Q Consensus 167 ~~~--vd~l~ld~~~~~~~~l~~l----------------~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~ 228 (270)
+.+ +..+++-.-+++.+.|+.. ++.. .+-.+..-+|=+- --||.++..+.++-+. .++
T Consensus 317 ~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~-p~i~i~tdiIvGf--PgET~edf~~Tl~~v~-~l~ 392 (509)
T PRK14327 317 KGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAI-PNVALTTDIIVGF--PNETDEQFEETLSLYR-EVG 392 (509)
T ss_pred hcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-CCcEEeeeEEEeC--CCCCHHHHHHHHHHHH-HcC
Confidence 887 6778877655433333222 2210 0111111122222 2378888877777654 456
Q ss_pred CCceEec-----CCCCCCC----CCHhHHHHHHHHHHHHHHHHHHHHh
Q 024250 229 TNILWVN-----PDCGLKT----RKYTEVKPALSNMVAAAKLLRTQLA 267 (270)
Q Consensus 229 ~~~l~vs-----p~Cgl~~----~~~~~a~~kL~~l~~~a~~~~~~~~ 267 (270)
.+.+.+. |+.-+.. .+.+...+-++.|.++.+..+.+..
T Consensus 393 ~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~~ 440 (509)
T PRK14327 393 FDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKKM 440 (509)
T ss_pred CCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666553 2222221 3567778889999999988766553
No 204
>PRK12999 pyruvate carboxylase; Reviewed
Probab=36.29 E-value=2.3e+02 Score=30.55 Aligned_cols=75 Identities=20% Similarity=0.151 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee--ccCCchhHHHHHHh
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM--CYSNFNDIIHSIID 167 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~--c~g~~~~~~~~l~~ 167 (270)
+.|.+.++++.++|++.|.|-|.+=.. .|... ...+.++++.+ + +++.+|+ -.|......=...+
T Consensus 691 ~~~~~~a~~l~~~Ga~~i~ikDt~G~l-------~P~~~-~~lv~~lk~~~---~--ipi~~H~Hnt~Gla~an~laA~~ 757 (1146)
T PRK12999 691 DYYVDLAKELEKAGAHILAIKDMAGLL-------KPAAA-YELVSALKEEV---D--LPIHLHTHDTSGNGLATYLAAAE 757 (1146)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccCCC-------CHHHH-HHHHHHHHHHc---C--CeEEEEeCCCCchHHHHHHHHHH
Confidence 355666777888999999998864331 23222 22333444333 2 3455553 34433233334578
Q ss_pred CCCCEEEEEc
Q 024250 168 MDADVITIEN 177 (270)
Q Consensus 168 ~~vd~l~ld~ 177 (270)
+++|.++.-.
T Consensus 758 aGad~vD~av 767 (1146)
T PRK12999 758 AGVDIVDVAV 767 (1146)
T ss_pred hCCCEEEecc
Confidence 8999887765
No 205
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=35.92 E-value=2.9e+02 Score=23.98 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
+...++.+.|..-+-|. .+++.+..-| +....+.++.+-+.. +..+.-|+-|-+ .+.++.+.+.++|..
T Consensus 46 k~~~el~kkGy~g~llS-----GGm~srg~VP---l~kf~d~lK~lke~~--~l~inaHvGfvd-E~~~eklk~~~vdvv 114 (275)
T COG1856 46 KRCMELEKKGYEGCLLS-----GGMDSRGKVP---LWKFKDELKALKERT--GLLINAHVGFVD-ESDLEKLKEELVDVV 114 (275)
T ss_pred HHHHHHHhcCceeEEEe-----CCcCCCCCcc---HHHHHHHHHHHHHhh--CeEEEEEeeecc-HHHHHHHHHhcCcEE
Confidence 44556777787644443 3332221111 233344555543332 256778988866 567889999999999
Q ss_pred EEEccC
Q 024250 174 TIENSR 179 (270)
Q Consensus 174 ~ld~~~ 179 (270)
++||..
T Consensus 115 sLDfvg 120 (275)
T COG1856 115 SLDFVG 120 (275)
T ss_pred EEeecC
Confidence 999965
No 206
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=35.89 E-value=2.8e+02 Score=25.61 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCc--hhHHHHHHhCCC
Q 024250 93 KDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF--NDIIHSIIDMDA 170 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~--~~~~~~l~~~~v 170 (270)
.+.+++|.++|+++|.||-.--. -+.+.+.++.+-+..+ .+.|+. ||. .+....|.++++
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~-------------s~~~~~~ik~ik~~~~-~~~via----GNV~T~e~a~~L~~aGa 171 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH-------------SEHVIDMIKKIKKKFP-DVPVIA----GNVVTYEGAKDLIDAGA 171 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT-------------SHHHHHHHHHHHHHST-TSEEEE----EEE-SHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCEEEccccCcc-------------HHHHHHHHHHHHHhCC-CceEEe----cccCCHHHHHHHHHcCC
Confidence 34466788899999999942211 1223344444433343 244433 554 256678999999
Q ss_pred CEEEEEc
Q 024250 171 DVITIEN 177 (270)
Q Consensus 171 d~l~ld~ 177 (270)
|++-+=.
T Consensus 172 d~vkVGi 178 (352)
T PF00478_consen 172 DAVKVGI 178 (352)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 9998876
No 207
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=35.62 E-value=2.2e+02 Score=25.00 Aligned_cols=14 Identities=21% Similarity=0.378 Sum_probs=6.2
Q ss_pred HHHHcCCCEEEecc
Q 024250 98 DLEKAGINVIQIDE 111 (270)
Q Consensus 98 ~l~~~G~~~IQiDE 111 (270)
.+.++|++.|.|-+
T Consensus 157 ~~~~~Ga~~i~l~D 170 (274)
T cd07938 157 RLLDLGCDEISLGD 170 (274)
T ss_pred HHHHcCCCEEEECC
Confidence 33344444444444
No 208
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=35.60 E-value=3.6e+02 Score=24.92 Aligned_cols=93 Identities=11% Similarity=0.142 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccCc---cccCCCCC--------CccHHHHHHHHHHHHHHHhcCCCCCceEEEee
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDEAA---LREGLPLR--------KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM 153 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDEP~---l~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~ 153 (270)
++++.+.|.+..+...++|.|.|+|.--- +...++.. .++.+.-..+..+.++.+-+.++....|++-+
T Consensus 144 I~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rl 223 (363)
T COG1902 144 IEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRL 223 (363)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 57777888888888889999999998531 11122211 01122223444555555555555444456665
Q ss_pred ccCCc-----------hhHHHHHHhCC-CCEEEEEc
Q 024250 154 CYSNF-----------NDIIHSIIDMD-ADVITIEN 177 (270)
Q Consensus 154 c~g~~-----------~~~~~~l~~~~-vd~l~ld~ 177 (270)
+..++ ..+.+.|.+.+ +|.+++-.
T Consensus 224 s~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~ 259 (363)
T COG1902 224 SPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSE 259 (363)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeec
Confidence 54333 14667788899 79988765
No 209
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=35.49 E-value=2.2e+02 Score=25.33 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHc-CCCEEEe----------ccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHH
Q 024250 94 DEVEDLEKA-GINVIQI----------DEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDII 162 (270)
Q Consensus 94 ~~~~~l~~~-G~~~IQi----------DEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~ 162 (270)
+++++..+. |+|++-+ +.|.+. .+.++++.+.++ +++++|-+-|-..+.+
T Consensus 156 eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~-----------------~~~L~~i~~~~~--iPlV~hG~SGI~~e~~ 216 (281)
T PRK06806 156 TEAKRFAEETDVDALAVAIGNAHGMYNGDPNLR-----------------FDRLQEINDVVH--IPLVLHGGSGISPEDF 216 (281)
T ss_pred HHHHHHHHhhCCCEEEEccCCCCCCCCCCCccC-----------------HHHHHHHHHhcC--CCEEEECCCCCCHHHH
Q ss_pred HHHHhCCCCEEEE
Q 024250 163 HSIIDMDADVITI 175 (270)
Q Consensus 163 ~~l~~~~vd~l~l 175 (270)
..+.+.+++.+.+
T Consensus 217 ~~~i~~G~~kinv 229 (281)
T PRK06806 217 KKCIQHGIRKINV 229 (281)
T ss_pred HHHHHcCCcEEEE
No 210
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=35.34 E-value=3.6e+02 Score=24.77 Aligned_cols=139 Identities=13% Similarity=0.092 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
+.++.|.++|++.|.+-=|..+. . + .+.++.+.+..+. ..+ ...|..+.. -++...+++++.+
T Consensus 27 ~ia~~L~~~Gv~~IEvG~p~~~~-------~--~-----~e~i~~i~~~~~~-~~i-~~~~r~~~~-di~~a~~~g~~~i 89 (365)
T TIGR02660 27 AIARALDEAGVDELEVGIPAMGE-------E--E-----RAVIRAIVALGLP-ARL-MAWCRARDA-DIEAAARCGVDAV 89 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCH-------H--H-----HHHHHHHHHcCCC-cEE-EEEcCCCHH-HHHHHHcCCcCEE
Confidence 44666888999999986554331 1 0 1233333332221 333 233444554 3577889999999
Q ss_pred EEEccCCCc-----------hhHHHhhhc----ccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 174 TIENSRSDE-----------KLLSVFREG----VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 174 ~ld~~~~~~-----------~~l~~l~~~----~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
++=...++. +.++.+.+. -..+..+.++.-|.. ..+++.+.+.++.+.+ .|.+++.+.-..
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~---r~~~~~l~~~~~~~~~-~Ga~~i~l~DT~ 165 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDAS---RADPDFLVELAEVAAE-AGADRFRFADTV 165 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCC---CCCHHHHHHHHHHHHH-cCcCEEEEcccC
Confidence 988754321 122222111 023556777766543 4578888888888765 578888888888
Q ss_pred CCCCCCHhHHHHHHHHH
Q 024250 239 GLKTRKYTEVKPALSNM 255 (270)
Q Consensus 239 gl~~~~~~~a~~kL~~l 255 (270)
|.. +|....+-++.+
T Consensus 166 G~~--~P~~v~~lv~~l 180 (365)
T TIGR02660 166 GIL--DPFSTYELVRAL 180 (365)
T ss_pred CCC--CHHHHHHHHHHH
Confidence 855 565444444444
No 211
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=35.33 E-value=3.6e+02 Score=24.88 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=80.7
Q ss_pred HHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 93 KDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
.+.++.|.++|++.|.+--|..+. . + .+.++.+.+... ...+..+ |..+. .-++...+++++.
T Consensus 29 ~~ia~~L~~~GV~~IE~G~p~~~~-------~--~-----~e~i~~i~~~~~-~~~i~~~-~r~~~-~di~~a~~~g~~~ 91 (378)
T PRK11858 29 LAIARMLDEIGVDQIEAGFPAVSE-------D--E-----KEAIKAIAKLGL-NASILAL-NRAVK-SDIDASIDCGVDA 91 (378)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcCh-------H--H-----HHHHHHHHhcCC-CeEEEEE-cccCH-HHHHHHHhCCcCE
Confidence 344567888999999987565431 1 0 112333322111 1333333 43333 3367788999999
Q ss_pred EEEEccCCCc-----------hhHHHhhhc----ccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCC
Q 024250 173 ITIENSRSDE-----------KLLSVFREG----VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPD 237 (270)
Q Consensus 173 l~ld~~~~~~-----------~~l~~l~~~----~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~ 237 (270)
+++=...++. +.++.+.+. -..+..+.++.-|+. ..+++.+.+.++.+.+ .|.+++.+.-.
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~---r~~~~~l~~~~~~~~~-~Ga~~I~l~DT 167 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS---RTDLDFLIEFAKAAEE-AGADRVRFCDT 167 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC---CCCHHHHHHHHHHHHh-CCCCEEEEecc
Confidence 8887654331 223322221 023556777765553 3578888888888765 57788888777
Q ss_pred CCCCCCCHhHHHHHHHHHH
Q 024250 238 CGLKTRKYTEVKPALSNMV 256 (270)
Q Consensus 238 Cgl~~~~~~~a~~kL~~l~ 256 (270)
.|.. +|....+-++.+.
T Consensus 168 ~G~~--~P~~v~~lv~~l~ 184 (378)
T PRK11858 168 VGIL--DPFTMYELVKELV 184 (378)
T ss_pred CCCC--CHHHHHHHHHHHH
Confidence 7644 6665555555444
No 212
>PLN02808 alpha-galactosidase
Probab=35.28 E-value=3.1e+02 Score=25.66 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCC---ccHHHH---HHHHHHHHHHHhcCCCCCceEEEee--
Q 024250 82 HETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRK---SEHAFY---LDWAVHSFRITNCGVQDTTQIHTHM-- 153 (270)
Q Consensus 82 ~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~i~lH~-- 153 (270)
++.+.+.++++.. .-|.++|.++|.||+-......+... .++..| +....+.+.. . +++.+||+
T Consensus 48 e~~i~~~a~~mv~--~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~--~----GlkfGiy~~~ 119 (386)
T PLN02808 48 ETLIKQTADAMVS--SGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHS--K----GLKLGIYSDA 119 (386)
T ss_pred HHHHHHHHHHHHH--cchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHH--C----CCceEEEecC
Confidence 3445555554433 34678899999999987653221111 122333 2222233322 1 34556665
Q ss_pred ----cc----CCc---hhHHHHHHhCCCCEEEEEccC
Q 024250 154 ----CY----SNF---NDIIHSIIDMDADVITIENSR 179 (270)
Q Consensus 154 ----c~----g~~---~~~~~~l~~~~vd~l~ld~~~ 179 (270)
|. |.+ ..-...+.+-+||.|-+|...
T Consensus 120 G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C~ 156 (386)
T PLN02808 120 GTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCE 156 (386)
T ss_pred CccccCCCCCcchHHHHHHHHHHHHhCCCEEeecCcC
Confidence 52 222 134467889999999999865
No 213
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=35.26 E-value=2.8e+02 Score=24.17 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=14.9
Q ss_pred hhHHHHHHhCCCCEEEEEc
Q 024250 159 NDIIHSIIDMDADVITIEN 177 (270)
Q Consensus 159 ~~~~~~l~~~~vd~l~ld~ 177 (270)
.++...+.++++|.+.+--
T Consensus 179 ~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 179 VELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHcCCCEEEEEc
Confidence 3566778889999999863
No 214
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=35.18 E-value=3.5e+02 Score=24.64 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCC--CEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCC
Q 024250 92 IKDEVEDLEKAGI--NVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMD 169 (270)
Q Consensus 92 ~~~~~~~l~~~G~--~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~ 169 (270)
..+.+.+|.++|+ ++||||=.- . + .+.+.+.++.+-+..+. ..++.-.| ++.. -...+.+++
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~------g---h----~~~~~e~I~~ir~~~p~-~~vi~g~V-~t~e-~a~~l~~aG 161 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAH------G---H----SDSVINMIQHIKKHLPE-TFVIAGNV-GTPE-AVRELENAG 161 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCC------C---c----hHHHHHHHHHHHhhCCC-CeEEEEec-CCHH-HHHHHHHcC
Confidence 4467888999965 999999321 0 1 22333444444443432 33443234 3443 446788999
Q ss_pred CCEEEEE
Q 024250 170 ADVITIE 176 (270)
Q Consensus 170 vd~l~ld 176 (270)
+|++-+=
T Consensus 162 ad~i~vg 168 (326)
T PRK05458 162 ADATKVG 168 (326)
T ss_pred cCEEEEC
Confidence 9996544
No 215
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=35.10 E-value=3.6e+02 Score=24.78 Aligned_cols=147 Identities=15% Similarity=0.157 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
+.++.|.++|++.|.+=-|.=+...|... + .+.+.+.+.. +. +..+. ..|. |.. -++..++++++.+
T Consensus 72 ~ia~~L~~~GV~~IEvGs~vspk~vPqma-d----~~ev~~~i~~----~~-~~~~~-~l~~-n~~-die~A~~~g~~~v 138 (347)
T PLN02746 72 ELIQRLVSSGLPVVEATSFVSPKWVPQLA-D----AKDVMAAVRN----LE-GARFP-VLTP-NLK-GFEAAIAAGAKEV 138 (347)
T ss_pred HHHHHHHHcCCCEEEECCCcCcccccccc-c----HHHHHHHHHh----cc-CCcee-EEcC-CHH-HHHHHHHcCcCEE
Confidence 44677889999999988664211122111 2 1223333333 11 12222 2353 554 3577889999999
Q ss_pred EEEccCCC-----------chhHHHhhhcc----cCCCeeeceEecCCC---CCCCCHHHHHHHHHHHhccccCCceEec
Q 024250 174 TIENSRSD-----------EKLLSVFREGV----KYGAGIGPGVYDIHS---PRIPSTEEIADRINKMLAVLETNILWVN 235 (270)
Q Consensus 174 ~ld~~~~~-----------~~~l~~l~~~~----~~~~~l~~GvVd~~~---~~~e~~e~v~~~i~~~~~~~~~~~l~vs 235 (270)
++-+..++ .+.++.+.+.+ ..+..+...+-..-. .-.-+++.+.+.++++.+ .|.+++.+.
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~-~Gad~I~l~ 217 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYD-MGCYEISLG 217 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHH-cCCCEEEec
Confidence 88864321 23333332210 124444322211111 123578999999999875 588999999
Q ss_pred CCCCCCCCCHhHHHHHHHHHH
Q 024250 236 PDCGLKTRKYTEVKPALSNMV 256 (270)
Q Consensus 236 p~Cgl~~~~~~~a~~kL~~l~ 256 (270)
-..|... |....+-++.+.
T Consensus 218 DT~G~a~--P~~v~~lv~~l~ 236 (347)
T PLN02746 218 DTIGVGT--PGTVVPMLEAVM 236 (347)
T ss_pred CCcCCcC--HHHHHHHHHHHH
Confidence 8888774 655444444443
No 216
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=34.77 E-value=1.2e+02 Score=29.79 Aligned_cols=50 Identities=14% Similarity=0.255 Sum_probs=27.9
Q ss_pred EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc----CCchhHHHHH
Q 024250 107 IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY----SNFNDIIHSI 165 (270)
Q Consensus 107 IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~----g~~~~~~~~l 165 (270)
..+|||.-..++ .+.+ ++..+.++.+.+.-+-.++||||- |||..-++.+
T Consensus 198 ~~~d~~~~~~~v-----tp~~----i~~~l~~~~e~l~lph~~h~H~nnlg~pgn~~~t~~t~ 251 (556)
T TIGR03121 198 LSLDDPVPYFGI-----TPRE----IIKGLARANEELGLPHSIHVHCNNLGVPGNYETTLDTL 251 (556)
T ss_pred ccccCCCCCCCC-----CHHH----HHHHHHHHHHhcCCCceEEEecCCCCCCCchHHHHHHH
Confidence 377887665444 2333 334444444544434578999873 5675445544
No 217
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.39 E-value=2.4e+02 Score=27.22 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=42.6
Q ss_pred CCchhHHHHHHhCCCCEEEEEccCCCc----hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccc
Q 024250 156 SNFNDIIHSIIDMDADVITIENSRSDE----KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 227 (270)
Q Consensus 156 g~~~~~~~~l~~~~vd~l~ld~~~~~~----~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~ 227 (270)
.+..+.+..|.+.++|.+.+|.++++. +.++.+++.. .+..|..|.| .|.++..+.++...+.+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~-p~~~v~agnv-------~t~~~a~~l~~aGad~v 293 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALD-PGVPIVAGNV-------VTAEGTRDLVEAGADIV 293 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHC-CCCeEEeecc-------CCHHHHHHHHHcCCCEE
Confidence 344567888999999999999987542 3344455431 1456778874 56777777777655543
No 218
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=34.20 E-value=3.2e+02 Score=24.69 Aligned_cols=82 Identities=6% Similarity=0.057 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch---hHHHHHHhCCC
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDMDA 170 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~---~~~~~l~~~~v 170 (270)
+.+.++...|+|+|.=||...... .. .+++-...+.++++++.+.-.....-.++++.++.. +..+...+.+.
T Consensus 34 ~~~y~~a~GG~D~IKDDE~l~~q~--f~--p~~eRv~~~~~a~~~a~~eTG~~~ly~~NiT~~~~~em~~ra~~a~~~G~ 109 (309)
T PF00016_consen 34 ELAYEFALGGVDFIKDDENLANQP--FC--PFEERVPACMEAVDRAEEETGEKKLYAANITADTPDEMIERAEYAKEAGA 109 (309)
T ss_dssp HHHHHHHHTTSSEEEE-TT-SSBT--TB--EHHHHHHHHHHHHHHHHHHHSS--EEEEEE-SSSHHHHHHHHHHHHHHTG
T ss_pred hHHHhhhhcccceecccccccCcc--cc--cHhHhHHhhhhhhhccccccceecceecccccccHHHHHHhhhhhhhhcc
Confidence 334456677999999999765321 11 233345666777777655332222234555533333 45567788999
Q ss_pred CEEEEEccC
Q 024250 171 DVITIENSR 179 (270)
Q Consensus 171 d~l~ld~~~ 179 (270)
+++-+++..
T Consensus 110 ~~vmv~~~~ 118 (309)
T PF00016_consen 110 NAVMVNVLT 118 (309)
T ss_dssp SEEEEEHHH
T ss_pred chhhccccc
Confidence 999999744
No 219
>PRK05660 HemN family oxidoreductase; Provisional
Probab=34.11 E-value=3.8e+02 Score=24.70 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEeeccCCc-hhHHHHHHhCCCCEEEEEccCCCchhHHHhhhc-------------ccC
Q 024250 129 LDWAVHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIENSRSDEKLLSVFREG-------------VKY 194 (270)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~-~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~-------------~~~ 194 (270)
+....+.+++.....+ ...+.+-+=.++. .+.+..|.+++++.+++=.-..+.+.++.+.+. -..
T Consensus 77 l~~ll~~l~~~~~~~~-~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~ 155 (378)
T PRK05660 77 IQRLLDGVRARLPFAP-DAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGL 155 (378)
T ss_pred HHHHHHHHHHhCCCCC-CcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 4444555555432212 2344433221333 367888999999999987654333333332210 001
Q ss_pred C-CeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceE-----ecCCCCCCC
Q 024250 195 G-AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILW-----VNPDCGLKT 242 (270)
Q Consensus 195 ~-~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~-----vsp~Cgl~~ 242 (270)
+ +.+.+-++-+ .--+|.+.+.+.++.+.+ ++++++- +-|+.-|..
T Consensus 156 G~~~v~~dli~G--lpgqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~ 206 (378)
T PRK05660 156 GLRSFNLDLMHG--LPDQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGS 206 (378)
T ss_pred CCCeEEEEeecC--CCCCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccc
Confidence 1 1122222222 234799999999999875 5666653 445555543
No 220
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=33.98 E-value=74 Score=31.32 Aligned_cols=193 Identities=16% Similarity=0.104 Sum_probs=87.0
Q ss_pred CEEEeeccCCCCCcHHHHHHHHhc--------cCCCccccc-chHHHHHhhh--ccCCCCcHHHHHHHHHHHHHHHHHHH
Q 024250 31 PIIYGDVSRPKAMTVFWSSLAQSM--------TARPMKGML-TGPVTILNWS--FVRNDQPRHETCYQIALAIKDEVEDL 99 (270)
Q Consensus 31 p~i~~~i~~~~~~~~~~~~~~~~~--------~~~~vK~~l-~GP~Tla~~~--~~~~~~~~~~l~~~l~~~~~~~~~~l 99 (270)
-+|||+-+..+.-+++-+..++=. +..|||+++ .||+..|..- ..+++..+++-+.+|-..+.--.+.=
T Consensus 311 VVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~s 390 (980)
T KOG0447|consen 311 VVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKN 390 (980)
T ss_pred EEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHHHhc
Confidence 446788776555566655555422 246999998 7999998642 12233344433444433332223333
Q ss_pred HHcCCCE------EEeccCccccC----CCCCCccH-HHHHHHHHHHHHHHhcC-CCCCceEEEeeccCCch----hHHH
Q 024250 100 EKAGINV------IQIDEAALREG----LPLRKSEH-AFYLDWAVHSFRITNCG-VQDTTQIHTHMCYSNFN----DIIH 163 (270)
Q Consensus 100 ~~~G~~~------IQiDEP~l~~~----l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~lH~c~g~~~----~~~~ 163 (270)
++-|+.+ +.+--|-|... +|.--... ........+.+-++.+. .+.+-.|+|.+--|+.. .+-+
T Consensus 391 Vr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTD 470 (980)
T KOG0447|consen 391 VKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTD 470 (980)
T ss_pred ccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHH
Confidence 3446542 23344544321 11100000 00000011222222211 22233455544435442 2334
Q ss_pred HHHhCCCC---EEE----EEccCC---CchhHHHh-hhc-ccCCCeeeceEecCCCCCCCCHHHHHHHHHHH
Q 024250 164 SIIDMDAD---VIT----IENSRS---DEKLLSVF-REG-VKYGAGIGPGVYDIHSPRIPSTEEIADRINKM 223 (270)
Q Consensus 164 ~l~~~~vd---~l~----ld~~~~---~~~~l~~l-~~~-~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~ 223 (270)
...++... .|. +|++.. +++-+..+ .++ .|....=..|||.++...-++.++++.-=++.
T Consensus 471 LVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE~F 542 (980)
T KOG0447|consen 471 LVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYEEEF 542 (980)
T ss_pred HHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHHHHH
Confidence 44555432 233 344321 22222222 221 12222235799999988888988887655544
No 221
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=33.80 E-value=2.8e+02 Score=23.16 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=42.8
Q ss_pred ceEEEeeccCCchhHHHHHHhCC--CCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHh
Q 024250 147 TQIHTHMCYSNFNDIIHSIIDMD--ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKML 224 (270)
Q Consensus 147 ~~i~lH~c~g~~~~~~~~l~~~~--vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~ 224 (270)
.++.+|+. +.....++.+.+.+ ..++.-.+ .++.+.+..+.+ .|-.+.++.... ..+.+.+ ++++
T Consensus 122 ~pv~iH~~-~~~~~~~~~l~~~~~~~~~i~H~~-~~~~~~~~~~~~---~g~~~~~~~~~~----~~~~~~~----~~~i 188 (252)
T TIGR00010 122 LPVIIHAR-DAEEDVLDILREEKPKVGGVLHCF-TGDAELAKKLLD---LGFYISISGIVT----FKNAKSL----REVV 188 (252)
T ss_pred CCeEEEec-CccHHHHHHHHhcCCCCCEEEEcc-CCCHHHHHHHHH---CCCeEeeceeEe----cCCcHHH----HHHH
Confidence 56889976 45556777777763 34444333 223333333332 233444443211 1223333 3444
Q ss_pred ccccCCceEecCCCCC
Q 024250 225 AVLETNILWVNPDCGL 240 (270)
Q Consensus 225 ~~~~~~~l~vsp~Cgl 240 (270)
+.++.+++++++|...
T Consensus 189 ~~~~~dril~~TD~p~ 204 (252)
T TIGR00010 189 RKIPLERLLVETDSPY 204 (252)
T ss_pred HhCCHHHeEecccCCC
Confidence 4567899999999854
No 222
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=33.65 E-value=3e+02 Score=24.29 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHH-cCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhH---HHHH
Q 024250 90 LAIKDEVEDLEK-AGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDI---IHSI 165 (270)
Q Consensus 90 ~~~~~~~~~l~~-~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~---~~~l 165 (270)
+.++++++.+.+ .|++-|.+-= +.+....++ .++. .+.++.+.+..++.++++.++...+..+. ....
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~G-stGE~~~Ls---~eEr----~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a 95 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGG-STGEAFLLS---TEEK----KQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYA 95 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECC-CccccccCC---HHHH----HHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHH
Confidence 477788888989 9998765542 111111121 1111 22222222223333566777743455443 3445
Q ss_pred HhCCCCEEEEEc
Q 024250 166 IDMDADVITIEN 177 (270)
Q Consensus 166 ~~~~vd~l~ld~ 177 (270)
.++++|++.+=.
T Consensus 96 ~~~Gad~v~v~~ 107 (293)
T PRK04147 96 TELGYDAISAVT 107 (293)
T ss_pred HHcCCCEEEEeC
Confidence 678888887654
No 223
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=33.61 E-value=4.4e+02 Score=25.34 Aligned_cols=94 Identities=9% Similarity=0.105 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCC-chh---HHHHHHh
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSN-FND---IIHSIID 167 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~-~~~---~~~~l~~ 167 (270)
+.+.+.++...|+|+|.=||+...... . ..++-...+.++++++.+.-.....-.++++ ++ ..+ ..+.+.+
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~f--~--p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT-~~~~~em~~ra~~~~e 252 (468)
T PRK04208 178 YGRVVYEALRGGLDFTKDDENLNSQPF--N--RWRDRFLFVMEAIDKAEAETGERKGHYLNVT-APTMEEMYKRAEFAKE 252 (468)
T ss_pred HHHHHHHHHhcCCceeeCCCCCCCCCC--c--cHHHHHHHHHHHHHHHHHhhCCcceEEEecC-CCCHHHHHHHHHHHHH
Confidence 344455566779999999998554211 1 2233355566777776554332222345556 44 543 4556788
Q ss_pred CCCCEEEEEccCCCchhHHHhhh
Q 024250 168 MDADVITIENSRSDEKLLSVFRE 190 (270)
Q Consensus 168 ~~vd~l~ld~~~~~~~~l~~l~~ 190 (270)
.+.+++-+++...+...+..+++
T Consensus 253 ~G~~~~mv~~~~~G~~~l~~l~~ 275 (468)
T PRK04208 253 LGSPIVMIDVVTAGWTALQSLRE 275 (468)
T ss_pred hCCCEEEEeccccccHHHHHHHH
Confidence 99999999986645555555553
No 224
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=33.45 E-value=2e+02 Score=25.31 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=16.7
Q ss_pred CCch-hHHHHHHhCCCCEEEEEc
Q 024250 156 SNFN-DIIHSIIDMDADVITIEN 177 (270)
Q Consensus 156 g~~~-~~~~~l~~~~vd~l~ld~ 177 (270)
|+.+ +.++.+.++++|++++=.
T Consensus 237 GGI~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 237 GGINIENAAAYAAAGADILVTSA 259 (272)
T ss_pred CCCCHHHHHHHHHcCCcEEEECh
Confidence 5553 678889999999996543
No 225
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=33.38 E-value=3.5e+02 Score=24.09 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=76.6
Q ss_pred HHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-CchhHHHHHHhCCCCE
Q 024250 95 EVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NFNDIIHSIIDMDADV 172 (270)
Q Consensus 95 ~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~~~~~~~l~~~~vd~ 172 (270)
.+++-.+.+..+ ||+.+-.+.. . . .+......+...+..+ +++.||.=-| ++ +.+....+++++.
T Consensus 34 vi~AAee~~sPvIlq~~~~~~~~-~-----g----~~~~~~~~~~~A~~~~--VPValHLDH~~~~-e~i~~ai~~GftS 100 (284)
T PRK12857 34 IVAAAEAEKSPVIIQASQGAIKY-A-----G----IEYISAMVRTAAEKAS--VPVALHLDHGTDF-EQVMKCIRNGFTS 100 (284)
T ss_pred HHHHHHHhCCCEEEEechhHhhh-C-----C----HHHHHHHHHHHHHHCC--CCEEEECCCCCCH-HHHHHHHHcCCCe
Confidence 344445556665 8998755432 1 1 2233344444444443 5678887544 45 3455778899999
Q ss_pred EEEEccCCCc-hhHHHhhhcc----cCC--CeeeceEecCCC---------CCCCCHHHHHHHHHHHhccccCCceEecC
Q 024250 173 ITIENSRSDE-KLLSVFREGV----KYG--AGIGPGVYDIHS---------PRIPSTEEIADRINKMLAVLETNILWVNP 236 (270)
Q Consensus 173 l~ld~~~~~~-~~l~~l~~~~----~~~--~~l~~GvVd~~~---------~~~e~~e~v~~~i~~~~~~~~~~~l~vsp 236 (270)
+-+|-+..++ ++++.-++.. +.| -.-=+|.|-+.. ....+|+++.+-+++. + -..++.
T Consensus 101 VM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~T----g--vD~LAv 174 (284)
T PRK12857 101 VMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEET----G--VDALAI 174 (284)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHH----C--CCEEee
Confidence 9999876443 3444333210 111 112344443321 1256888887777653 2 236666
Q ss_pred CCCCCCC----CHhHHHHHHHHHHH
Q 024250 237 DCGLKTR----KYTEVKPALSNMVA 257 (270)
Q Consensus 237 ~Cgl~~~----~~~~a~~kL~~l~~ 257 (270)
+.|-.|- .|..-++-|+.+.+
T Consensus 175 aiGt~HG~y~~~p~Ld~~~L~~i~~ 199 (284)
T PRK12857 175 AIGTAHGPYKGEPKLDFDRLAKIKE 199 (284)
T ss_pred ccCccccccCCCCcCCHHHHHHHHH
Confidence 7766652 34433444444443
No 226
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=33.38 E-value=3.9e+02 Score=24.59 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecc
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDE 111 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDE 111 (270)
++.+.+.+.+..+...++|+|-|+|.-
T Consensus 154 I~~ii~~f~~AA~rA~~AGfDGVEIh~ 180 (362)
T PRK10605 154 IPGIVNDFRQAIANAREAGFDLVELHS 180 (362)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 567777888888888999999999984
No 227
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=33.36 E-value=40 Score=26.77 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=20.8
Q ss_pred CeeeceEecCCCC-CCCCHHHHHHHHH
Q 024250 196 AGIGPGVYDIHSP-RIPSTEEIADRIN 221 (270)
Q Consensus 196 ~~l~~GvVd~~~~-~~e~~e~v~~~i~ 221 (270)
++=++||||+.++ .+|+-+++++|=+
T Consensus 127 grgvlGVvDG~sp~gvE~d~d~~~Rr~ 153 (162)
T COG1839 127 GRGVLGVVDGYSPLGVETDEDIAERRE 153 (162)
T ss_pred CceEEEEecCCCCcccccHHHHHHHHH
Confidence 4578999999877 6899998877633
No 228
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=33.10 E-value=3.7e+02 Score=24.25 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee--ccCCchhHHHHHHhCCCC
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM--CYSNFNDIIHSIIDMDAD 171 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~--c~g~~~~~~~~l~~~~vd 171 (270)
+.++.+.++|++.|+|.=-............. .+...+.++.+.+..+ .++++=+ .+.+..++...+.+.++|
T Consensus 116 ~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~---~~~~~eiv~~v~~~~~--iPv~vKl~p~~~~~~~~a~~l~~~Gad 190 (325)
T cd04739 116 DYARQIEEAGADALELNIYALPTDPDISGAEV---EQRYLDILRAVKSAVT--IPVAVKLSPFFSALAHMAKQLDAAGAD 190 (325)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCCcccchH---HHHHHHHHHHHHhccC--CCEEEEcCCCccCHHHHHHHHHHcCCC
Confidence 33445567799999887421110000111111 2334445555444443 2333332 223455677788899999
Q ss_pred EEEEEc
Q 024250 172 VITIEN 177 (270)
Q Consensus 172 ~l~ld~ 177 (270)
++.+=-
T Consensus 191 gi~~~n 196 (325)
T cd04739 191 GLVLFN 196 (325)
T ss_pred eEEEEc
Confidence 998754
No 229
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=32.98 E-value=3.2e+02 Score=23.46 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=59.4
Q ss_pred CcccccchHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHH
Q 024250 58 PMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFR 137 (270)
Q Consensus 58 ~vK~~l~GP~Tla~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~ 137 (270)
.+++++-||+.+-..+ .+ .+..+.-.+.+.+.++...+.|++.|.+.-... . ....++..+...+.++
T Consensus 58 gl~ls~h~p~~~nl~s-----~d-~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~----~--~~~~e~~~~~~~~~l~ 125 (273)
T smart00518 58 NIDVSVHAPYLINLAS-----PD-KEKVEKSIERLIDEIKRCEELGIKALVFHPGSY----L--KQSKEEALNRIIESLN 125 (273)
T ss_pred CCCEEEECCceecCCC-----CC-HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc----c--CCCHHHHHHHHHHHHH
Confidence 3667777886421111 11 223344445677777778888999888753321 1 1123344677788888
Q ss_pred HHhcCCCCCceEEEeeccC-------CchhHHHHHHhCC---CCEEEEEccC
Q 024250 138 ITNCGVQDTTQIHTHMCYS-------NFNDIIHSIIDMD---ADVITIENSR 179 (270)
Q Consensus 138 ~~~~~~~~~~~i~lH~c~g-------~~~~~~~~l~~~~---vd~l~ld~~~ 179 (270)
++.+. +.++.+.+..+.+ +..+....+..++ -=++.+|..+
T Consensus 126 ~l~~~-~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v~~~~~~g~~lD~gH 176 (273)
T smart00518 126 EVIDE-TKGVVILLETTAGKGSQIGSTFEDLKEIIDLIKELDRIGVCIDTCH 176 (273)
T ss_pred HHHhc-cCCcEEEEeccCCCCCccCCCHHHHHHHHHhcCCCCCeEEEEEccc
Confidence 88763 3346677766532 1112333333333 2367777755
No 230
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=32.93 E-value=3.1e+02 Score=23.98 Aligned_cols=74 Identities=8% Similarity=-0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCC-CCceEEEeeccCCchhHHHHHHhC
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQ-DTTQIHTHMCYSNFNDIIHSIIDM 168 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~lH~c~g~~~~~~~~l~~~ 168 (270)
+.+.+.++++.++|++.|.|-+..=.... +.+.+.++.+.+.++ ..+.++.|.=+|--....-...+.
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P-----------~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~a 219 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGGTLP-----------HEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEA 219 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCH-----------HHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHc
Q ss_pred CCCEEE
Q 024250 169 DADVIT 174 (270)
Q Consensus 169 ~vd~l~ 174 (270)
+++.++
T Consensus 220 Ga~~id 225 (273)
T cd07941 220 GATQVQ 225 (273)
T ss_pred CCCEEE
No 231
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=32.89 E-value=4.3e+02 Score=25.30 Aligned_cols=94 Identities=5% Similarity=0.020 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch---hHHHHHHhC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDM 168 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~---~~~~~l~~~ 168 (270)
+.+.+.++...|+|+|.=||+...... . ..++-...+.++++++.+.-.....-.++++.++.. +..+.+.+.
T Consensus 163 ~A~~~~~~~~GGvD~IKDDE~l~~~~~--~--p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~~~ 238 (450)
T cd08212 163 YGRVVYECLRGGLDFTKDDENINSQPF--M--RWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEEMYKRAEFAKEL 238 (450)
T ss_pred HHHHHHHHHccCCcccccCccCCCCCC--C--CHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHHHHHHHHHHHHh
Confidence 344455566789999999998544211 1 223335566677777655432222223344433343 345567889
Q ss_pred CCCEEEEEccCCCchhHHHhhh
Q 024250 169 DADVITIENSRSDEKLLSVFRE 190 (270)
Q Consensus 169 ~vd~l~ld~~~~~~~~l~~l~~ 190 (270)
+.+++.+++.. +...+..+.+
T Consensus 239 G~~~~mv~~~~-G~~~l~~l~~ 259 (450)
T cd08212 239 GSPIIMHDLLT-GFTAIQSLAK 259 (450)
T ss_pred CCCeEeeeccc-ccchHHHHHH
Confidence 99999999765 5544555543
No 232
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=32.75 E-value=6.9e+02 Score=27.32 Aligned_cols=161 Identities=12% Similarity=0.145 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhC-
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDM- 168 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~- 168 (270)
+...+.++++.+.|+++|=|. + +.+ ..+..+...++++.+...-+.. ++++.|-+. ++ ++++.-++.
T Consensus 384 ~~al~~A~~qve~GA~iIDVn-~----g~~--~id~~eem~rvv~~i~~~~~~~--~vPlsIDS~--~~-~ViEaaLk~~ 451 (1229)
T PRK09490 384 DEALDVARQQVENGAQIIDIN-M----DEG--MLDSEAAMVRFLNLIASEPDIA--RVPIMIDSS--KW-EVIEAGLKCI 451 (1229)
T ss_pred HHHHHHHHHHHHCCCCEEEEC-C----CCC--CCCHHHHHHHHHHHHHhhhccC--CceEEEeCC--cH-HHHHHHHhhc
Confidence 345556777889999997665 1 111 1133344566666665432212 245666555 34 455665555
Q ss_pred -CCCE---EEEEccCCCc-hhHHHhhhcccCCCeeeceEecCCCCCCCCHH---HHHHHHHHHh-c--cccCCceEecCC
Q 024250 169 -DADV---ITIENSRSDE-KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTE---EIADRINKML-A--VLETNILWVNPD 237 (270)
Q Consensus 169 -~vd~---l~ld~~~~~~-~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e---~v~~~i~~~~-~--~~~~~~l~vsp~ 237 (270)
+.+. ++.+-....+ +.+...+++ +-.+++.-+|.... -.|.+ ++++|+-+.+ + -++++++++.|.
T Consensus 452 ~G~~IINSIs~~~~~~~~~~~~~l~~ky---ga~vV~m~~de~G~-~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~Dpl 527 (1229)
T PRK09490 452 QGKGIVNSISLKEGEEKFIEHARLVRRY---GAAVVVMAFDEQGQ-ADTRERKIEICKRAYDILTEEVGFPPEDIIFDPN 527 (1229)
T ss_pred CCCCEEEeCCCCCCCccHHHHHHHHHHh---CCCEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEcCC
Confidence 4433 3332111011 234445554 66777777775432 23444 3344443332 2 245788998887
Q ss_pred CCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Q 024250 238 CGLKTRKYTEVKPALSNMVAAAKLLRTQL 266 (270)
Q Consensus 238 Cgl~~~~~~~a~~kL~~l~~~a~~~~~~~ 266 (270)
...-....+.-........++.+.+++++
T Consensus 528 v~~v~t~~ee~~~~~~~~leair~ik~~~ 556 (1229)
T PRK09490 528 IFAVATGIEEHNNYAVDFIEATRWIKQNL 556 (1229)
T ss_pred cceeecChHHHHHHHHHHHHHHHHHHHHC
Confidence 76655433322233333445555666654
No 233
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=32.61 E-value=4e+02 Score=24.53 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCCEEEec--cCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCc-hhHHHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQID--EAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiD--EP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~-~~~~~~l~ 166 (270)
+.+.++++.+.+.|++-|.|- ||.. ..+ .+...++++.+-+..+ .+.+|+ |.. .+-+..|.
T Consensus 107 eEI~~~a~~~~~~Gv~~i~lvgGe~p~-------~~~----~e~l~~~i~~Ik~~~p---~i~i~~--g~lt~e~l~~Lk 170 (371)
T PRK09240 107 EEIEREMAAIKKLGFEHILLLTGEHEA-------KVG----VDYIRRALPIAREYFS---SVSIEV--QPLSEEEYAELV 170 (371)
T ss_pred HHHHHHHHHHHhCCCCEEEEeeCCCCC-------CCC----HHHHHHHHHHHHHhCC---Cceecc--CCCCHHHHHHHH
Confidence 455556677778899876553 2111 112 2233334443333232 123343 333 35678899
Q ss_pred hCCCCEEEEEc
Q 024250 167 DMDADVITIEN 177 (270)
Q Consensus 167 ~~~vd~l~ld~ 177 (270)
+++++.+++-.
T Consensus 171 ~aGv~r~~i~l 181 (371)
T PRK09240 171 ELGLDGVTVYQ 181 (371)
T ss_pred HcCCCEEEEEE
Confidence 99999998544
No 234
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=32.48 E-value=4e+02 Score=24.47 Aligned_cols=140 Identities=11% Similarity=0.078 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
+.++.|.++|++.|.+=-|..+ .++ .+.++.+.+... ...+..++ ..+.. -++.+.+++++.+
T Consensus 26 ~ia~~L~~~Gv~~IEvG~p~~~---------~~~-----~e~i~~i~~~~~-~~~v~~~~-r~~~~-di~~a~~~g~~~i 88 (363)
T TIGR02090 26 EIARKLDELGVDVIEAGFPIAS---------EGE-----FEAIKKISQEGL-NAEICSLA-RALKK-DIDKAIDCGVDSI 88 (363)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC---------hHH-----HHHHHHHHhcCC-CcEEEEEc-ccCHH-HHHHHHHcCcCEE
Confidence 4466688899999987544322 111 234444433222 23444443 34443 3677889999999
Q ss_pred EEEccCCCc-----------hhHHHhhhc----ccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 174 TIENSRSDE-----------KLLSVFREG----VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 174 ~ld~~~~~~-----------~~l~~l~~~----~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
.+=...++. +.++...+. -..+..+.++..|+. ..+++.+.+.++.+.+ .+.+++.+.-.-
T Consensus 89 ~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~---r~~~~~l~~~~~~~~~-~g~~~i~l~DT~ 164 (363)
T TIGR02090 89 HTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDAT---RTDIDFLIKVFKRAEE-AGADRINIADTV 164 (363)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecC---CCCHHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence 986543221 122222211 023567777777663 4578889888888764 577888877766
Q ss_pred CCCCCCHhHHHHHHHHHH
Q 024250 239 GLKTRKYTEVKPALSNMV 256 (270)
Q Consensus 239 gl~~~~~~~a~~kL~~l~ 256 (270)
|. .+|....+-++.+.
T Consensus 165 G~--~~P~~v~~li~~l~ 180 (363)
T TIGR02090 165 GV--LTPQKMEELIKKLK 180 (363)
T ss_pred Cc--cCHHHHHHHHHHHh
Confidence 64 46665444444443
No 235
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=32.42 E-value=2.7e+02 Score=24.31 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCCEEEeccCc
Q 024250 92 IKDEVEDLEKAGINVIQIDEAA 113 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~ 113 (270)
+.+.++.+.++|++.|.|-+..
T Consensus 140 ~~~~~~~~~~~g~~~i~l~DT~ 161 (266)
T cd07944 140 LLELLELVNEIKPDVFYIVDSF 161 (266)
T ss_pred HHHHHHHHHhCCCCEEEEecCC
Confidence 3344455556677776666643
No 236
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.40 E-value=1.8e+02 Score=26.37 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=48.2
Q ss_pred CCeeeceEecCCCC--------CCCCHHHHHHHHHHHhcccc------CCceEecCCCCCCCCCHhHHHHHHHHHHHHHH
Q 024250 195 GAGIGPGVYDIHSP--------RIPSTEEIADRINKMLAVLE------TNILWVNPDCGLKTRKYTEVKPALSNMVAAAK 260 (270)
Q Consensus 195 ~~~l~~GvVd~~~~--------~~e~~e~v~~~i~~~~~~~~------~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~ 260 (270)
++.+-.||.|.... -.+|.+-+++.|+.-++..+ ..+|+|+-|||=+.-.+..+| ...|++.|.
T Consensus 134 gk~~PyGiyd~~~n~g~v~vg~s~dTa~Fav~~i~~WW~~~g~~~yp~a~~lli~~D~GgsN~~r~r~w--k~~L~~la~ 211 (311)
T PF07592_consen 134 GKAIPYGIYDPAANEGWVSVGTSHDTADFAVDSIRRWWEEMGKARYPHAKRLLITADNGGSNGSRRRLW--KKRLQELAD 211 (311)
T ss_pred ceeccceeEeccCCeEEEEEecCcccHHHHHHHHHHHHHHhChhhcCchheEEEeccCCCCccchhHHH--HHHHHHHHH
Confidence 46677777776432 35888989999998888764 488999999999887776555 456666665
Q ss_pred HH
Q 024250 261 LL 262 (270)
Q Consensus 261 ~~ 262 (270)
..
T Consensus 212 ~~ 213 (311)
T PF07592_consen 212 ET 213 (311)
T ss_pred Hh
Confidence 43
No 237
>PRK03906 mannonate dehydratase; Provisional
Probab=32.35 E-value=2.9e+02 Score=25.83 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHH-HhC
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI-IDM 168 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l-~~~ 168 (270)
+.+.+.-+.+.++|-+|=-|.---....+....++.+++++...+.++.+... ++++ +|+ |+-+++... -++
T Consensus 43 ~~i~~~~~~ie~~Gl~~~vvEs~pv~~~Ik~g~~~rd~~ie~y~~sirnlg~~---GI~~---icY-nfmpv~dwtrt~l 115 (385)
T PRK03906 43 EEILARKAEIEAAGLEWSVVESVPVHEDIKTGTPNRDRYIENYKQTLRNLAAA---GIKV---VCY-NFMPVFDWTRTDL 115 (385)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCCHHHHHHHHHHHHHHHHhc---CCcE---EEe-cCcccccccCccc
Q ss_pred CCCE----EEEEccCCCchhHHHhhhcccCCCeeeceEecCCCC--CCCCHHHHHHHHHHHhccccCCceEecCCCC---
Q 024250 169 DADV----ITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSP--RIPSTEEIADRINKMLAVLETNILWVNPDCG--- 239 (270)
Q Consensus 169 ~vd~----l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~--~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cg--- 239 (270)
..-. -.+.|............ ..-.+....... .....+-..+.+..-...++...+...|+++
T Consensus 116 ~~~~~~ga~~l~f~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~L~~~~i~~lpG~~~~~ 188 (385)
T PRK03906 116 AYELPDGSTALRFDQIDFAAFDPHI-------LKRPGAEADYGEEEIAQAAARFAAMSEEDKARLTRNIIAGLPGWEEPY 188 (385)
T ss_pred cccCCCCchhhhcchhhHhhcCHHH-------hcccchhhcCCHHHHHHHHHHHHhCCHHHHHHhhccEEEeCCCCCccc
Q ss_pred -----------CCCCCHhHHHHHHHHHHHHHHHHHHHHh
Q 024250 240 -----------LKTRKYTEVKPALSNMVAAAKLLRTQLA 267 (270)
Q Consensus 240 -----------l~~~~~~~a~~kL~~l~~~a~~~~~~~~ 267 (270)
....+.+.+|+++....+..-.+.++.+
T Consensus 189 ~~~~~~~~~~~y~~i~~e~lw~~l~~fL~~v~p~Aee~G 227 (385)
T PRK03906 189 TLEQFRALLELYKDIDEEKLRENLAYFLKAIIPVAEEVG 227 (385)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
No 238
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=32.15 E-value=2.8e+02 Score=25.46 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCCEEEeccC
Q 024250 94 DEVEDLEKAGINVIQIDEA 112 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP 112 (270)
+.++++.++|++.|.|-+.
T Consensus 146 ~~~~~~~~~Ga~~i~l~DT 164 (365)
T TIGR02660 146 ELAEVAAEAGADRFRFADT 164 (365)
T ss_pred HHHHHHHHcCcCEEEEccc
Confidence 3344455667777776664
No 239
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=31.55 E-value=4.6e+02 Score=24.89 Aligned_cols=94 Identities=7% Similarity=0.003 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh---HHHHHHhC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND---IIHSIIDM 168 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~---~~~~l~~~ 168 (270)
+.+.+.++...|+|+|.=||+..... .. .+++-...+.++++++.+.-.....-.+.++ ++..+ ..+...+.
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~--f~--p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~a~~~ 252 (424)
T cd08208 178 FAELGYQSWLGGLDIAKDDEMLADVD--WC--PLEERAALLGKARRRAEAETGVPKIYLANIT-DEVDRLMELHDVAVRN 252 (424)
T ss_pred HHHHHHHHHcCCcccccccccccCCC--CC--CHHHHHHHHHHHHHHHHHhhCCcceEEEEcc-CCHHHHHHHHHHHHHh
Confidence 34445556678999999999754421 11 2333456667777776654332222234455 45443 45567889
Q ss_pred CCCEEEEEccCCCchhHHHhhh
Q 024250 169 DADVITIENSRSDEKLLSVFRE 190 (270)
Q Consensus 169 ~vd~l~ld~~~~~~~~l~~l~~ 190 (270)
+.+++-+|+...+...+..+.+
T Consensus 253 G~~~vmv~~~~~G~~al~~L~~ 274 (424)
T cd08208 253 GANALLINAMPVGLSAVRMLRK 274 (424)
T ss_pred CCCEEEEeeecccHHHHHHHHh
Confidence 9999999986655655666665
No 240
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=31.47 E-value=3.1e+02 Score=22.88 Aligned_cols=83 Identities=8% Similarity=0.075 Sum_probs=46.6
Q ss_pred ceEEEeeccCCchhHHHHHHhCC-CCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhc
Q 024250 147 TQIHTHMCYSNFNDIIHSIIDMD-ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 225 (270)
Q Consensus 147 ~~i~lH~c~g~~~~~~~~l~~~~-vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~ 225 (270)
.++.+|+. +....+++.+.+.+ ...+-+-...++.+.++.+.+ .+-.+.+|.+-. ..+.++ ++++.+
T Consensus 122 ~pv~iH~~-~~~~~~~~l~~~~~~~~~~i~H~~~~~~~~~~~~~~---~g~~~~~~~~~~----~~~~~~----~~~~~~ 189 (251)
T cd01310 122 LPVVIHSR-DAHEDVLEILKEYGPPKRGVFHCFSGSAEEAKELLD---LGFYISISGIVT----FKNANE----LREVVK 189 (251)
T ss_pred CCeEEEee-CchHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHH---cCCEEEeeeeec----cCCCHH----HHHHHH
Confidence 56889955 55667788888886 444444443333334444443 234455554321 122222 344455
Q ss_pred cccCCceEecCCCCCC
Q 024250 226 VLETNILWVNPDCGLK 241 (270)
Q Consensus 226 ~~~~~~l~vsp~Cgl~ 241 (270)
.++.+++++++|-...
T Consensus 190 ~~~~dril~~TD~p~~ 205 (251)
T cd01310 190 EIPLERLLLETDSPYL 205 (251)
T ss_pred hCChHHEEEcccCCCC
Confidence 6677899999996543
No 241
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.14 E-value=3.4e+02 Score=23.23 Aligned_cols=67 Identities=7% Similarity=0.034 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCCCCceEEEeeccCCch--hHHHHHHhCCCCEEEEEccC-CCchhHHHhhhcccCCCeeeceEecCCC
Q 024250 133 VHSFRITNCGVQDTTQIHTHMCYSNFN--DIIHSIIDMDADVITIENSR-SDEKLLSVFREGVKYGAGIGPGVYDIHS 207 (270)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~lH~c~g~~~--~~~~~l~~~~vd~l~ld~~~-~~~~~l~~l~~~~~~~~~l~~GvVd~~~ 207 (270)
.+.++++.+... .+ +.++ |..+ +-...+++++++.+.+-... .+++.++.+.+. .+..++++ +|.++
T Consensus 65 ~~~I~~i~~~~~--~p--i~vG-GGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~--fg~~ivvs-lD~~~ 134 (234)
T PRK13587 65 FDYIKSLRRLTT--KD--IEVG-GGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHT--FPGRIYLS-VDAYG 134 (234)
T ss_pred HHHHHHHHhhcC--Ce--EEEc-CCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHH--cCCCEEEE-EEeeC
Confidence 345555544322 22 3445 3332 34567888999999887644 355556666553 23346666 66654
No 242
>PRK03739 2-isopropylmalate synthase; Validated
Probab=31.06 E-value=2.8e+02 Score=27.27 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCEEEeccCccc
Q 024250 95 EVEDLEKAGINVIQIDEAALR 115 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~ 115 (270)
.++.|.++|++.|.+==|..+
T Consensus 57 ia~~L~~~GV~~IE~GfP~~s 77 (552)
T PRK03739 57 MFDLLVKIGFKEIEVGFPSAS 77 (552)
T ss_pred HHHHHHHcCCCEEEEECCCcC
Confidence 355678899999887655544
No 243
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=30.05 E-value=4.1e+02 Score=23.92 Aligned_cols=75 Identities=13% Similarity=0.252 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEecc--CccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCc---hhHHHHHHh
Q 024250 93 KDEVEDLEKAGINVIQIDE--AALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF---NDIIHSIID 167 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDE--P~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~---~~~~~~l~~ 167 (270)
.+.++.+.++|++.|+|.= |--... ....+. .+...+.++.+.+..+ .++++-.- +++ .+....+.+
T Consensus 117 ~~~a~~~~~agad~ielN~scpp~~~~--~~g~~~---~~~~~eil~~v~~~~~--iPV~vKl~-p~~~~~~~~a~~l~~ 188 (334)
T PRK07565 117 VDYARQIEQAGADALELNIYYLPTDPD--ISGAEV---EQRYLDILRAVKSAVS--IPVAVKLS-PYFSNLANMAKRLDA 188 (334)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCC--CccccH---HHHHHHHHHHHHhccC--CcEEEEeC-CCchhHHHHHHHHHH
Confidence 3445556678999999862 101000 111111 2334555555555443 44555543 333 456667888
Q ss_pred CCCCEEEE
Q 024250 168 MDADVITI 175 (270)
Q Consensus 168 ~~vd~l~l 175 (270)
.++|++.+
T Consensus 189 ~G~dgI~~ 196 (334)
T PRK07565 189 AGADGLVL 196 (334)
T ss_pred cCCCeEEE
Confidence 99999976
No 244
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.89 E-value=5e+02 Score=24.77 Aligned_cols=140 Identities=11% Similarity=0.114 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCcc-ccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc-CCc-hhHHHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAAL-REGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY-SNF-NDIIHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~-g~~-~~~~~~l~ 166 (270)
+.+.++++.|.+.|++.|.|-...+ +...+.....+. ......+.++.+.+..+ ...+.+.+.. .+. .+.++.|.
T Consensus 200 e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~-~~~~l~~Ll~~l~~~~~-~~~ir~~~~~p~~l~~ell~~m~ 277 (467)
T PRK14329 200 ESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKD-EAVNFAQLLEMVAEAVP-DMRIRFSTSHPKDMTDDVLEVMA 277 (467)
T ss_pred HHHHHHHHHHHHCCCeEEEEEeecccccccccCCcccc-ccccHHHHHHHHHhcCC-CcEEEEecCCcccCCHHHHHHHH
Confidence 4555677888888998765543333 222211100000 00112233443332222 1233443321 122 35777787
Q ss_pred hC--CCCEEEEEccCCCchhHHHhhh----------------cccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhcccc
Q 024250 167 DM--DADVITIENSRSDEKLLSVFRE----------------GVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 228 (270)
Q Consensus 167 ~~--~vd~l~ld~~~~~~~~l~~l~~----------------~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~ 228 (270)
+. ++..+++-.-+.+.+.|+.+.+ .. .+-.+..-+|=+- --||.++..+.++-+.+ ++
T Consensus 278 ~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~-~~~~i~~d~IvGf--PgET~edf~~tl~~i~~-l~ 353 (467)
T PRK14329 278 KYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRII-PDCGISTDMIAGF--PTETEEDHQDTLSLMEE-VG 353 (467)
T ss_pred hCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-CCCEEEEeEEEeC--CCCCHHHHHHHHHHHHh-hC
Confidence 77 5788888765544333333321 10 0111222222221 24788888887777654 55
Q ss_pred CCceEec
Q 024250 229 TNILWVN 235 (270)
Q Consensus 229 ~~~l~vs 235 (270)
.+.+.+.
T Consensus 354 ~~~~~v~ 360 (467)
T PRK14329 354 YDFAFMF 360 (467)
T ss_pred CCeEeee
Confidence 5666554
No 245
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=29.73 E-value=3.2e+02 Score=23.20 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=7.2
Q ss_pred HHHHHHcCCCEEEecc
Q 024250 96 VEDLEKAGINVIQIDE 111 (270)
Q Consensus 96 ~~~l~~~G~~~IQiDE 111 (270)
++.+.++|++.|.+-+
T Consensus 152 ~~~~~~~g~~~i~l~D 167 (265)
T cd03174 152 AKALEEAGADEISLKD 167 (265)
T ss_pred HHHHHHcCCCEEEech
Confidence 3334444555544443
No 246
>PRK13669 hypothetical protein; Provisional
Probab=29.52 E-value=53 Score=23.30 Aligned_cols=29 Identities=14% Similarity=-0.033 Sum_probs=24.7
Q ss_pred eeceEecCCCCCCCCHHHHHHHHHHHhcc
Q 024250 198 IGPGVYDIHSPRIPSTEEIADRINKMLAV 226 (270)
Q Consensus 198 l~~GvVd~~~~~~e~~e~v~~~i~~~~~~ 226 (270)
=..-+||++.+.-+|+|++.+.|.+.++.
T Consensus 46 ~~FAlVng~~V~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 46 GLFALVNGEVVEGETPEELVENIYAHLEE 74 (78)
T ss_pred CceEEECCeEeecCCHHHHHHHHHHHHhh
Confidence 35567899999999999999999998864
No 247
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.41 E-value=3.6e+02 Score=23.07 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.5
Q ss_pred CchhHHHHHHhCCCCEEEEE
Q 024250 157 NFNDIIHSIIDMDADVITIE 176 (270)
Q Consensus 157 ~~~~~~~~l~~~~vd~l~ld 176 (270)
++.+.++.+.+++++++.+-
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIW 33 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEc
Confidence 45678889999999999884
No 248
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=29.27 E-value=4.2e+02 Score=24.88 Aligned_cols=82 Identities=15% Similarity=0.241 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHcCCCE-EEeccCcccc-CCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC
Q 024250 79 QPRHETCYQIALAIKDEVEDLEKAGINV-IQIDEAALRE-GLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS 156 (270)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~l~~~G~~~-IQiDEP~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g 156 (270)
-+.+++.+.+...+.+.+--..++|++. |-=|+|-.+. +++--... .+-++++++.++.+. -++..|-|
T Consensus 203 i~~e~lwenl~yFL~~ViPvAEe~GV~LAiHPDDPP~~i~GlpRIvst--------~ed~~rll~~V~Spa-nGlt~CtG 273 (394)
T TIGR00695 203 IDEEKLRDNLAFFLQEILPVAEEYGVQMAIHPDDPPRPILGLPRIVST--------IEDMQWLVATSDSPA-NGFTMCTG 273 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCEEEECCCCCCccccCCCcccCC--------HHHHHHHHHhcCCcc-ccEEEEec
Confidence 3567888899999999888888999996 9999986542 12210112 234555555555432 35667877
Q ss_pred Cch-----hHHHHHHhCC
Q 024250 157 NFN-----DIIHSIIDMD 169 (270)
Q Consensus 157 ~~~-----~~~~~l~~~~ 169 (270)
++. ++...+.+.+
T Consensus 274 Slg~~~~ndl~~~i~~fg 291 (394)
T TIGR00695 274 SYGVRPDNDLVEMAKQFA 291 (394)
T ss_pred ccccCCCCCHHHHHHHHc
Confidence 654 2444444554
No 249
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=29.23 E-value=4.9e+02 Score=24.52 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch---hHHHHHHh
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIID 167 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~---~~~~~l~~ 167 (270)
.+.+.+.++...|+|+|.=||+..... .. .+++-...+.++++++.+.-.....-.++++ |+.. +..+.+.+
T Consensus 151 ~~a~~~y~~~~GGvD~IKDDE~l~~q~--~~--p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~a~~ 225 (407)
T PRK09549 151 YLKEQLRDQALGGVDLVKDDEILFENA--LT--PFEKRIVAGKEVLQEVYETTGHKTLYAVNLT-GRTFELKEKAKRAAE 225 (407)
T ss_pred HHHHHHHHHHhcCCcceecCcCCCCCC--Cc--CHHHHHHHHHHHHHHHHHhhCCcceEEEecC-CCHHHHHHHHHHHHH
Confidence 344445566677999999999754321 11 2233355566777776554332222334445 4443 34456788
Q ss_pred CCCCEEEEEccCCCchhHHHhhh
Q 024250 168 MDADVITIENSRSDEKLLSVFRE 190 (270)
Q Consensus 168 ~~vd~l~ld~~~~~~~~l~~l~~ 190 (270)
.+.+++-+++...+...+..+.+
T Consensus 226 ~G~~~~m~~~~~~G~~al~~l~~ 248 (407)
T PRK09549 226 AGADALLFNVFAYGLDVLQSLAE 248 (407)
T ss_pred cCCCeEEEeccccchHHHHHHHh
Confidence 99999999986544555555554
No 250
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.13 E-value=4.9e+02 Score=24.48 Aligned_cols=169 Identities=12% Similarity=0.139 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCC-CccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-Cc-hhHHHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLR-KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NF-NDIIHSII 166 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~-~~~~~~l~ 166 (270)
+.+.++++.|.+.|++.|.|-+..+....... .... ....+.++.+.+ +++...+.+++... +. .+.+..+.
T Consensus 179 e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~----~~l~~Ll~~l~~-~~~~~~ir~~~~~p~~~~~ell~~l~ 253 (444)
T PRK14325 179 DDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEI----ADFAELLRLVAA-IDGIERIRYTTSHPRDFTDDLIEAYA 253 (444)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCc----chHHHHHHHHHh-cCCccEEEEccCCcccCCHHHHHHHH
Confidence 34556677788889998766555544321100 0011 112233433322 22111233332211 22 24667777
Q ss_pred hCC--CCEEEEEccCCCchhHHHhhhc------------c---cCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccC
Q 024250 167 DMD--ADVITIENSRSDEKLLSVFREG------------V---KYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET 229 (270)
Q Consensus 167 ~~~--vd~l~ld~~~~~~~~l~~l~~~------------~---~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~ 229 (270)
+.+ +..+++-.-+.+.+.|+...+. . ..+-.+..-+|=+- --||.++..+.++-+. .++.
T Consensus 254 ~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~--PgET~ed~~~tl~~i~-~~~~ 330 (444)
T PRK14325 254 DLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGF--PGETDEDFEATMKLIE-DVGF 330 (444)
T ss_pred cCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEEC--CCCCHHHHHHHHHHHH-hcCC
Confidence 765 6666665544333333322210 0 00112222233222 2478888888777765 3555
Q ss_pred CceEec-----CCCCCCC----CCHhHHHHHHHHHHHHHHHHHHHH
Q 024250 230 NILWVN-----PDCGLKT----RKYTEVKPALSNMVAAAKLLRTQL 266 (270)
Q Consensus 230 ~~l~vs-----p~Cgl~~----~~~~~a~~kL~~l~~~a~~~~~~~ 266 (270)
+.+.+. |+..+.. .+.....+.++.|.+..+..+.++
T Consensus 331 ~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 376 (444)
T PRK14325 331 DQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAF 376 (444)
T ss_pred CeeeeeeccCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555433 3333332 356788888888888888766654
No 251
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=29.12 E-value=5e+02 Score=24.55 Aligned_cols=95 Identities=5% Similarity=0.078 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCC-ch---hHHHHHH
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSN-FN---DIIHSII 166 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~-~~---~~~~~l~ 166 (270)
.+.+.+.++...|+|+|.=||+...... . .+++-...+.++++++.+.-.....-.+.++ ++ .. +..+.+.
T Consensus 149 ~~a~~~y~~~~GGiD~IKDDE~l~~q~~--~--p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~~em~~ra~~~~ 223 (414)
T cd08206 149 EYARVVYEALRGGLDFVKDDENQNSQPF--M--RFEDRILFVAEAMDKAEAETGEAKGHYLNIT-ADTPEEMIKRAEFAK 223 (414)
T ss_pred HHHHHHHHHHhcCCcccccCccCCCCCC--C--cHHHHHHHHHHHHHHHHHhhCCcceEEeccC-CCcHHHHHHHHHHHH
Confidence 3344455666789999999997443211 1 2233356667777776554332221223334 34 43 3455678
Q ss_pred hCCCCEEEEEccCCCchhHHHhhh
Q 024250 167 DMDADVITIENSRSDEKLLSVFRE 190 (270)
Q Consensus 167 ~~~vd~l~ld~~~~~~~~l~~l~~ 190 (270)
+.+.+++-+++...+...+..+++
T Consensus 224 ~~G~~~~mv~~~~~G~~~l~~l~~ 247 (414)
T cd08206 224 ELGSVIVMVDGVTAGWTAIQSARR 247 (414)
T ss_pred HhCCcEEEEeeecccHHHHHHHHH
Confidence 899999999986545555555554
No 252
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=28.95 E-value=5.5e+02 Score=24.95 Aligned_cols=126 Identities=10% Similarity=0.104 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCC
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMD 169 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~ 169 (270)
+.+.+.+.++.+.||++|=|--.+- .+ ++ +.+.++++.+.+.. +.++.+-++ +. ..+..-++.+
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st------~p-~~----~~v~~~V~~l~~~~--~~pISIDT~--~~-~v~eaAL~aG 228 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF------DD-DP----DVVKEKVKTALDAL--DSPVIADTP--TL-DELYEALKAG 228 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC------CC-cH----HHHHHHHHHHHhhC--CCcEEEeCC--CH-HHHHHHHHcC
Confidence 5667778888899999987663321 11 22 23444444443322 245666655 23 4566777788
Q ss_pred CCEEEEEccCCC-chhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCC
Q 024250 170 ADVITIENSRSD-EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240 (270)
Q Consensus 170 vd~l~ld~~~~~-~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl 240 (270)
+|.+. |..... .+.+...+++ +..+++ +.. ...++.+...+.++.+.+ .|-+++++.|.=|+
T Consensus 229 AdiIN-sVs~~~~d~~~~l~a~~---g~~vVl--m~~--~~~~~~~~l~~~ie~a~~-~Gi~~IIlDPglg~ 291 (499)
T TIGR00284 229 ASGVI-MPDVENAVELASEKKLP---EDAFVV--VPG--NQPTNYEELAKAVKKLRT-SGYSKVAADPSLSP 291 (499)
T ss_pred CCEEE-ECCccchhHHHHHHHHc---CCeEEE--EcC--CCCchHHHHHHHHHHHHH-CCCCcEEEeCCCCc
Confidence 88766 543322 2223333432 222211 111 123445777777777654 35578898888775
No 253
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=28.88 E-value=4.2e+02 Score=23.58 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccC---CCCCCccHHHHHHHHHHHHHHHhcCC-CCCceEEEeecc----CCchh--
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREG---LPLRKSEHAFYLDWAVHSFRITNCGV-QDTTQIHTHMCY----SNFND-- 160 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~lH~c~----g~~~~-- 160 (270)
.+.+.++++.++|+.-|+|.+=....- +....+..-.-.++..+.++.+.+.. ..++.|+-.|.- ..+.+
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi 172 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDAL 172 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHH
Confidence 345567888899999999977433211 11110000000233334444443331 223444444221 12433
Q ss_pred -HHHHHHhCCCCEEEEEccCCCchhHHHhhhcccC---CCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecC
Q 024250 161 -IIHSIIDMDADVITIENSRSDEKLLSVFREGVKY---GAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNP 236 (270)
Q Consensus 161 -~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~---~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp 236 (270)
......++++|++.++....+.+.+..+.+.++. +..+. ++.+... ..+.+++ ..+|-.+++..+
T Consensus 173 ~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~--~~~~~~~-~~~~~eL--------~~lG~~~v~~~~ 241 (285)
T TIGR02320 173 KRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV--IVPTSYY-TTPTDEF--------RDAGISVVIYAN 241 (285)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE--EecCCCC-CCCHHHH--------HHcCCCEEEEhH
Confidence 3345688999999999632234444444332111 12232 2333222 2244443 234545554333
Q ss_pred CCCCCCCCHhHHHHHHHHHHHHHHHHHH
Q 024250 237 DCGLKTRKYTEVKPALSNMVAAAKLLRT 264 (270)
Q Consensus 237 ~Cgl~~~~~~~a~~kL~~l~~~a~~~~~ 264 (270)
. ..+..++.|.++++.+.+
T Consensus 242 ~---------~~~aa~~a~~~~~~~~~~ 260 (285)
T TIGR02320 242 H---------LLRAAYAAMQQVAERILE 260 (285)
T ss_pred H---------HHHHHHHHHHHHHHHHHH
Confidence 2 234667777777665553
No 254
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=28.63 E-value=4.1e+02 Score=23.35 Aligned_cols=148 Identities=14% Similarity=0.164 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 93 KDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
.+.++.|.++|++.|++=-+.-....|... + .+.+...+.. .. +.++... | .+..+ ++...+++++.
T Consensus 23 ~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~-d----~~~~~~~l~~----~~-~~~~~~~-~-~~~~d-v~~A~~~g~~~ 89 (274)
T cd07938 23 IELIDALSAAGLRRIEVTSFVSPKWVPQMA-D----AEEVLAGLPR----RP-GVRYSAL-V-PNLRG-AERALAAGVDE 89 (274)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCcccccccC-C----HHHHHhhccc----CC-CCEEEEE-C-CCHHH-HHHHHHcCcCE
Confidence 445677889999999886221111111111 1 1122222221 22 2444444 4 36654 67888999999
Q ss_pred EEEEccCCCc-----------hhHHHhhhc----ccCCCeeeceEecCCCC---CCCCHHHHHHHHHHHhccccCCceEe
Q 024250 173 ITIENSRSDE-----------KLLSVFREG----VKYGAGIGPGVYDIHSP---RIPSTEEIADRINKMLAVLETNILWV 234 (270)
Q Consensus 173 l~ld~~~~~~-----------~~l~~l~~~----~~~~~~l~~GvVd~~~~---~~e~~e~v~~~i~~~~~~~~~~~l~v 234 (270)
+++-...++. +.++...+. -..+..+...+-.+... -..+++.+.+.++++.+ .|.+++.+
T Consensus 90 i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~-~Ga~~i~l 168 (274)
T cd07938 90 VAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLD-LGCDEISL 168 (274)
T ss_pred EEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHH-cCCCEEEE
Confidence 9887654321 112211110 01355555444433221 13478888888888765 58889999
Q ss_pred cCCCCCCCCCHhHHHHHHHHHH
Q 024250 235 NPDCGLKTRKYTEVKPALSNMV 256 (270)
Q Consensus 235 sp~Cgl~~~~~~~a~~kL~~l~ 256 (270)
.-..|.. +|....+-++.+.
T Consensus 169 ~DT~G~~--~P~~v~~lv~~l~ 188 (274)
T cd07938 169 GDTIGVA--TPAQVRRLLEAVL 188 (274)
T ss_pred CCCCCcc--CHHHHHHHHHHHH
Confidence 8888875 5654444444443
No 255
>PF04008 Adenosine_kin: Adenosine specific kinase; InterPro: IPR007153 The structure of a member of this family from the hyperthermophilic archaeon Pyrobaculum aerophilum contains a modified histidine residue which is interpreted as stable phosphorylation. In vitro binding studies confirmed that adenosine and AMP but not ADP or ATP bind to the protein [].; PDB: 1VGG_A 1RLH_A 1WVQ_A 2GL0_F 2JB7_B 2EKM_C 2D16_D.
Probab=28.56 E-value=41 Score=26.82 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=17.6
Q ss_pred CeeeceEecCCCC-CCCCHHHHHHHHH
Q 024250 196 AGIGPGVYDIHSP-RIPSTEEIADRIN 221 (270)
Q Consensus 196 ~~l~~GvVd~~~~-~~e~~e~v~~~i~ 221 (270)
++=.+||||+.++ -+|+.+++.+|=.
T Consensus 120 GrgvlGVvDG~~p~GvE~eed~~~Rk~ 146 (155)
T PF04008_consen 120 GRGVLGVVDGFSPKGVETEEDIKERKE 146 (155)
T ss_dssp EEEEEEEEESS--SEE--HHHHHHHHH
T ss_pred CcEEEEEEcCCCCCCccCHHHHHHHHH
Confidence 4678999999887 4899999887744
No 256
>PRK06801 hypothetical protein; Provisional
Probab=28.54 E-value=4.3e+02 Score=23.56 Aligned_cols=81 Identities=7% Similarity=0.092 Sum_probs=48.7
Q ss_pred HHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
.+++..+.+..+ ||+.+..... . .. +......+.+.+..+ +++.||.=-|..-+.+...++.+++.+
T Consensus 34 vi~AAe~~~~PvIl~~~~~~~~~-~-----~~----~~~~~~~~~~a~~~~--vpV~lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 34 LFAAAKQERSPFIINIAEVHFKY-I-----SL----ESLVEAVKFEAARHD--IPVVLNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred HHHHHHHHCCCEEEEeCcchhhc-C-----CH----HHHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHhCCcEE
Confidence 344445556665 8998766542 1 22 223334444444443 567889765544466778889999999
Q ss_pred EEEccCCC-chhHHH
Q 024250 174 TIENSRSD-EKLLSV 187 (270)
Q Consensus 174 ~ld~~~~~-~~~l~~ 187 (270)
-+|-+..+ .++++.
T Consensus 102 m~D~S~l~~eeNi~~ 116 (286)
T PRK06801 102 MFDGSTLEYEENVRQ 116 (286)
T ss_pred EEcCCCCCHHHHHHH
Confidence 99987644 334433
No 257
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=28.37 E-value=4.6e+02 Score=23.95 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEeeccCCc-hhHHHHHHhCCCCEEEEEccCCCchhHHHhhhc------------c-cC
Q 024250 129 LDWAVHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIENSRSDEKLLSVFREG------------V-KY 194 (270)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~-~~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~------------~-~~ 194 (270)
++...+.+++... +.....+.+-+-.+.. .+.+..+.+++++.+++=.-..+.+.++.+.+. . ..
T Consensus 70 l~~ll~~i~~~~~-~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~ 148 (377)
T PRK08599 70 LERLLTAIHRNLP-LSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKA 148 (377)
T ss_pred HHHHHHHHHHhCC-CCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 3444444544332 3222344443332333 367888999999999887644333333322210 0 01
Q ss_pred C-CeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceE
Q 024250 195 G-AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILW 233 (270)
Q Consensus 195 ~-~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~ 233 (270)
+ ..+.+.++= ...-+|.+++.+.++.+.+ ++++.+.
T Consensus 149 g~~~v~~dli~--GlPgqt~~~~~~~l~~~~~-l~~~~i~ 185 (377)
T PRK08599 149 GFDNISIDLIY--ALPGQTIEDFKESLAKALA-LDIPHYS 185 (377)
T ss_pred CCCcEEEeeec--CCCCCCHHHHHHHHHHHHc-cCCCEEe
Confidence 1 112222221 2235788999998888765 4555543
No 258
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=27.86 E-value=5.1e+02 Score=24.27 Aligned_cols=117 Identities=12% Similarity=0.162 Sum_probs=58.3
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCC-ceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDT-TQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
.++++.+.|+++|++.-|... ....+.++.+.+..+.. ...-+|+. +--+..++...++++|++
T Consensus 21 ~~~~~~~~Gv~~ie~g~p~~~--------------~~~~~~i~~l~~~~~~~~ii~D~kl~-d~g~~~v~~a~~aGAdgV 85 (430)
T PRK07028 21 IAKEAVAGGADWIEAGTPLIK--------------SEGMNAIRTLRKNFPDHTIVADMKTM-DTGAIEVEMAAKAGADIV 85 (430)
T ss_pred HHHHHHhcCCcEEEeCCHHHH--------------HhhHHHHHHHHHHCCCCEEEEEeeec-cchHHHHHHHHHcCCCEE
Confidence 456667789999987533221 11122333333322211 12234554 212235678899999999
Q ss_pred EEEccCCCc---hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 174 TIENSRSDE---KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 174 ~ld~~~~~~---~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
++-....+. +..+..++ .+..+.+|+++..+ +.+ +++++.+ .+.+.+.+.|+.
T Consensus 86 ~v~g~~~~~~~~~~i~~a~~---~G~~~~~g~~s~~t----~~e----~~~~a~~-~GaD~I~~~pg~ 141 (430)
T PRK07028 86 CILGLADDSTIEDAVRAARK---YGVRLMADLINVPD----PVK----RAVELEE-LGVDYINVHVGI 141 (430)
T ss_pred EEecCCChHHHHHHHHHHHH---cCCEEEEEecCCCC----HHH----HHHHHHh-cCCCEEEEEecc
Confidence 974322111 22233333 35567777655432 122 2344432 355667676644
No 259
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.78 E-value=3.4e+02 Score=22.26 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=54.2
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT 174 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ 174 (270)
.++++.+.|+++||+-+-... ..+.++ ..++.... ..+.-.+..- .+..+...++++|+++
T Consensus 29 ~~~~~~~~Gv~~vqlr~k~~~---------~~e~~~----~~~~~~~~----~~~g~gtvl~--~d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 29 MAEAVAAGGMRLIEITWNSDQ---------PAELIS----QLREKLPE----CIIGTGTILT--LEDLEEAIAAGAQFCF 89 (187)
T ss_pred HHHHHHHCCCCEEEEeCCCCC---------HHHHHH----HHHHhCCC----cEEeEEEEEc--HHHHHHHHHcCCCEEE
Confidence 456677889999999864332 112222 22222221 2222223322 2567888999999996
Q ss_pred EEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccc
Q 024250 175 IENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 227 (270)
Q Consensus 175 ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~ 227 (270)
.-... .+..+.-... +....+| ..|++++.+..+...+++
T Consensus 90 ~p~~~--~~~~~~~~~~---~~~~i~G--------~~t~~e~~~A~~~Gadyv 129 (187)
T PRK07455 90 TPHVD--PELIEAAVAQ---DIPIIPG--------ALTPTEIVTAWQAGASCV 129 (187)
T ss_pred CCCCC--HHHHHHHHHc---CCCEEcC--------cCCHHHHHHHHHCCCCEE
Confidence 65432 2222332221 2334556 467888877666555554
No 260
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=27.41 E-value=1e+02 Score=21.61 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=26.0
Q ss_pred eeeceEecCCCCCCCCHHHHHHHHHHHhccccCCce
Q 024250 197 GIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNIL 232 (270)
Q Consensus 197 ~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l 232 (270)
.-.+|+|++.. +++++..+++.+-.+.+|.+-+
T Consensus 14 i~yl~iv~~~~---~d~d~Al~eM~e~A~~lGAnAV 46 (74)
T TIGR03884 14 LYYLGIVSTES---DNVDEIVENLREKVKAKGGMGL 46 (74)
T ss_pred EEEEEEEEEec---CCHHHHHHHHHHHHHHcCCCEE
Confidence 45788888644 4999999999998888887654
No 261
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=27.35 E-value=6.2e+02 Score=25.11 Aligned_cols=134 Identities=12% Similarity=0.202 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC---------
Q 024250 86 YQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS--------- 156 (270)
Q Consensus 86 ~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g--------- 156 (270)
+++.+.+.+.++.|.++|+|+|-+.- ++ +.+ ....+..++++..+ + ++++-..+.
T Consensus 121 ~~~~~~~~~~~~~l~~~gvD~l~~ET------~~----~~~-Ea~a~~~a~~~~~~-~----p~~~Sf~~~~~g~l~~G~ 184 (612)
T PRK08645 121 EEIRREFREQIDALLEEGVDGLLLET------FY----DLE-ELLLALEAAREKTD-L----PIIAQVAFHEDGVTQNGT 184 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEc------cC----CHH-HHHHHHHHHHHhCC-C----cEEEEEEECCCCeeCCCC
Confidence 66778899999999999999876652 11 111 13344555554321 2 233332221
Q ss_pred CchhHHHHHHhCCCCEEEEEccCCCc---hhHHHhhhcccCCCeeeceEecC---------CCCCCCCHHHHHHHHHHHh
Q 024250 157 NFNDIIHSIIDMDADVITIENSRSDE---KLLSVFREGVKYGAGIGPGVYDI---------HSPRIPSTEEIADRINKML 224 (270)
Q Consensus 157 ~~~~~~~~l~~~~vd~l~ld~~~~~~---~~l~~l~~~~~~~~~l~~GvVd~---------~~~~~e~~e~v~~~i~~~~ 224 (270)
++.+.+..+.+.+++++++--..+.. ..++.+... ..+-+|+.+. +..|..+++...+.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~avGiNC~~~p~~~~~~l~~l~~~----~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~ 260 (612)
T PRK08645 185 SLEEALKELVAAGADVVGLNCGLGPYHMLEALERIPIP----ENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFV 260 (612)
T ss_pred CHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHhc----cCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHH
Confidence 23467777788899999999775322 223333321 1234444322 2234568888888887766
Q ss_pred ccccCCceEecCCCCCCC
Q 024250 225 AVLETNILWVNPDCGLKT 242 (270)
Q Consensus 225 ~~~~~~~l~vsp~Cgl~~ 242 (270)
+. +--+|.--||..+
T Consensus 261 ~~---Ga~iiGGCCgt~P 275 (612)
T PRK08645 261 EQ---GVRLIGGCCGTTP 275 (612)
T ss_pred Hh---CCCEEeEecCCCH
Confidence 53 4557889999886
No 262
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.22 E-value=4e+02 Score=22.82 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=21.3
Q ss_pred ceEEEeeccCC----chhHHHHHHhCCCCEEEEE
Q 024250 147 TQIHTHMCYSN----FNDIIHSIIDMDADVITIE 176 (270)
Q Consensus 147 ~~i~lH~c~g~----~~~~~~~l~~~~vd~l~ld 176 (270)
.++++++++.+ ....++.+.++++|++.+-
T Consensus 75 ~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~ 108 (244)
T PRK13125 75 VPIILMTYLEDYVDSLDNFLNMARDVGADGVLFP 108 (244)
T ss_pred CCEEEEEecchhhhCHHHHHHHHHHcCCCEEEEC
Confidence 45667777643 3345678899999999984
No 263
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=27.13 E-value=4.8e+02 Score=23.71 Aligned_cols=47 Identities=9% Similarity=0.016 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcc-ccCCceEecCCCCCCCCCHhHHHHHHHHHHHHH
Q 024250 213 TEEIADRINKMLAV-LETNILWVNPDCGLKTRKYTEVKPALSNMVAAA 259 (270)
Q Consensus 213 ~e~v~~~i~~~~~~-~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a 259 (270)
++...+....+.+. ++++++++.|.+.=-+-..+.+...+..+..+|
T Consensus 186 ln~ak~L~~~l~~~Gi~~edIviDP~~~~lg~g~e~~~~~~e~IR~aA 233 (319)
T PRK04452 186 INLAKQLNILLTELGVPRERIVMDPTTGALGYGIEYSYSVMERIRLAA 233 (319)
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeCCcccccCCHHHHHHHHHHHHHHH
Confidence 44444444444433 456999999998644445566667777666655
No 264
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=27.12 E-value=3.3e+02 Score=26.79 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceE--EEeeccCCchhHHHHHHhCCCCE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQI--HTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
.++.|.++|++.|.+==|+-+ .. ..+.+......-. ++.+..+ +.++..++....++.+..++.+.
T Consensus 53 ia~~L~~~Gvd~IE~Gfp~~s---------~~-D~e~v~~i~~~~l--~~~~~~i~al~~~~~~did~a~~a~~~~~~~~ 120 (564)
T TIGR00970 53 YFDLLVRIGFKEIEVGFPSAS---------QT-DFDFVREIIEQGA--IPDDVTIQVLTQSREELIERTFEALSGAKRAT 120 (564)
T ss_pred HHHHHHHcCCCEEEEeCCCCC---------HH-HHHHHHHHHHhcC--CCCCcEEEEEcCCchhhHHHHHHHhcCCCCCE
Confidence 356678899999887644332 11 1233333332210 1112222 22333344444444555555567
Q ss_pred EEEEccCCC
Q 024250 173 ITIENSRSD 181 (270)
Q Consensus 173 l~ld~~~~~ 181 (270)
+++=...++
T Consensus 121 v~i~~~~Sd 129 (564)
T TIGR00970 121 VHFYNATSI 129 (564)
T ss_pred EEEEEcCCH
Confidence 888776643
No 265
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=27.11 E-value=5.5e+02 Score=24.35 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHc--CCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCc-hhHHHHHHh
Q 024250 91 AIKDEVEDLEKA--GINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF-NDIIHSIID 167 (270)
Q Consensus 91 ~~~~~~~~l~~~--G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~-~~~~~~l~~ 167 (270)
.+.++++.+.+. |++.|.+.+..+.. +. +.+.+.++.+.+ . +..... .+..+. .+.++.|.+
T Consensus 231 ~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~-------~~----~~~~~l~~~l~~-~--~i~~~~-~~~~~~~~e~l~~l~~ 295 (472)
T TIGR03471 231 SVIEEVKYALENFPEVREFFFDDDTFTD-------DK----PRAEEIARKLGP-L--GVTWSC-NARANVDYETLKVMKE 295 (472)
T ss_pred HHHHHHHHHHHhcCCCcEEEEeCCCCCC-------CH----HHHHHHHHHHhh-c--CceEEE-EecCCCCHHHHHHHHH
Confidence 444555556554 78878777765542 11 122222222211 1 122111 111233 367889999
Q ss_pred CCCCEEEEEccCCCchhHHHhhhc-------------ccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEe
Q 024250 168 MDADVITIENSRSDEKLLSVFREG-------------VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWV 234 (270)
Q Consensus 168 ~~vd~l~ld~~~~~~~~l~~l~~~-------------~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~v 234 (270)
+++..+++=..+.+.+.|+.+.+. -..|-.+...+|=+- --||.+++.+.++-+.+ ++.+.+.+
T Consensus 296 aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGl--Pget~e~~~~ti~~~~~-l~~~~~~~ 372 (472)
T TIGR03471 296 NGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGL--PGETRETIRKTIDFAKE-LNPHTIQV 372 (472)
T ss_pred cCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeC--CCCCHHHHHHHHHHHHh-cCCCceee
Confidence 999988766644333333332210 011223333333222 23788888888777754 44455444
Q ss_pred c
Q 024250 235 N 235 (270)
Q Consensus 235 s 235 (270)
+
T Consensus 373 ~ 373 (472)
T TIGR03471 373 S 373 (472)
T ss_pred e
Confidence 3
No 266
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=26.30 E-value=5.1e+02 Score=23.75 Aligned_cols=99 Identities=11% Similarity=0.189 Sum_probs=57.0
Q ss_pred EEeeccCCchhHHHHHHhCCCCEEEEEccC-CCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhcccc
Q 024250 150 HTHMCYSNFNDIIHSIIDMDADVITIENSR-SDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 228 (270)
Q Consensus 150 ~lH~c~g~~~~~~~~l~~~~vd~l~ld~~~-~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~ 228 (270)
.+-+.|+ . .-.+.|.++++.++-+-... ++...++.+... ..+-.++-| +.+.+++.+.+.-+.+.-.
T Consensus 106 ~~SSPfd-~-~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~-~kPiIlSTG--------ma~~~ei~~av~~~r~~g~ 174 (347)
T COG2089 106 FFSSPFD-L-TAVDLLESLNPPAYKIASGEINDLPLIKYIAKK-GKPIILSTG--------MATIEEIEEAVAILRENGN 174 (347)
T ss_pred EEecCCC-H-HHHHHHHhcCCCeEEecCccccChHHHHHHHhc-CCCEEEEcc--------cccHHHHHHHHHHHHhcCC
Confidence 3444543 2 24578899999999887644 456677777764 223344445 3455555555555544322
Q ss_pred CCceEecCCCCCCC-CCHhHHHHHHHHHHHHHHHHH
Q 024250 229 TNILWVNPDCGLKT-RKYTEVKPALSNMVAAAKLLR 263 (270)
Q Consensus 229 ~~~l~vsp~Cgl~~-~~~~~a~~kL~~l~~~a~~~~ 263 (270)
++.+++. |--.. .+.+ .-+|+.|...+.++.
T Consensus 175 ~~i~LLh--C~s~YPap~e--d~NL~~i~~l~~~Fn 206 (347)
T COG2089 175 PDIALLH--CTSAYPAPFE--DVNLKAIPKLAEAFN 206 (347)
T ss_pred CCeEEEE--ecCCCCCCHH--HhhHHHHHHHHHHhC
Confidence 2334443 33333 2333 588999999888774
No 267
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=26.06 E-value=3.9e+02 Score=22.36 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
+.++++.+.|+++||+-. . ..+. .+.++.+.+..+.++.++..|-.. .+-.+...+++.+.+
T Consensus 26 ~~~~a~~~gGi~~iEvt~---~------~~~~-------~~~i~~l~~~~~~~~~iGaGTV~~--~~~~~~a~~aGA~fi 87 (206)
T PRK09140 26 AHVGALIEAGFRAIEIPL---N------SPDP-------FDSIAALVKALGDRALIGAGTVLS--PEQVDRLADAGGRLI 87 (206)
T ss_pred HHHHHHHHCCCCEEEEeC---C------CccH-------HHHHHHHHHHcCCCcEEeEEecCC--HHHHHHHHHcCCCEE
Confidence 346677889999999973 1 1111 224444444343234455544421 245677888999888
Q ss_pred EEEccCCCchhHHHhhhcccCCCeeece
Q 024250 174 TIENSRSDEKLLSVFREGVKYGAGIGPG 201 (270)
Q Consensus 174 ~ld~~~~~~~~l~~l~~~~~~~~~l~~G 201 (270)
+.-.. +.+..+.... .+..+.+|
T Consensus 88 vsp~~--~~~v~~~~~~---~~~~~~~G 110 (206)
T PRK09140 88 VTPNT--DPEVIRRAVA---LGMVVMPG 110 (206)
T ss_pred ECCCC--CHHHHHHHHH---CCCcEEcc
Confidence 87543 2333344333 24456666
No 268
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=25.99 E-value=4.8e+02 Score=23.29 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=72.4
Q ss_pred HHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-CchhHHHHHHhCCCCE
Q 024250 95 EVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NFNDIIHSIIDMDADV 172 (270)
Q Consensus 95 ~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~~~~~~~l~~~~vd~ 172 (270)
.+++..+.+..+ ||+.+-.+.. .. + .+......+...+..+..+++.||.=-| ++ +.+....+++++.
T Consensus 34 vi~AAee~~sPvIl~~~~~~~~~-~~----~----~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~-e~i~~ai~~GftS 103 (286)
T PRK08610 34 ILEASQEENAPVILGVSEGAARY-MS----G----FYTVVKMVEGLMHDLNITIPVAIHLDHGSSF-EKCKEAIDAGFTS 103 (286)
T ss_pred HHHHHHHHCCCEEEEcCccHHhh-cC----c----HHHHHHHHHHHHHHcCCCCCEEEECCCCCCH-HHHHHHHHcCCCE
Confidence 344455567775 8998755432 11 1 1223334444443333224678887544 45 4455778999999
Q ss_pred EEEEccCCCc-hhHHHhhhcc----cCC--CeeeceEecCC-------CCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 173 ITIENSRSDE-KLLSVFREGV----KYG--AGIGPGVYDIH-------SPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 173 l~ld~~~~~~-~~l~~l~~~~----~~~--~~l~~GvVd~~-------~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
+-+|-++.++ ++++.-++.+ ..| -.-=+|.|-+. .....+||++.+-+++- + -..++.+.
T Consensus 104 VM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~T----g--vD~LAvai 177 (286)
T PRK08610 104 VMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKT----G--IDALAPAL 177 (286)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHH----C--CCEEEeec
Confidence 9999876443 3443332210 011 11234444221 12357999998877653 2 24677777
Q ss_pred CCCCC
Q 024250 239 GLKTR 243 (270)
Q Consensus 239 gl~~~ 243 (270)
|-.|-
T Consensus 178 Gt~HG 182 (286)
T PRK08610 178 GSVHG 182 (286)
T ss_pred ccccc
Confidence 77663
No 269
>PRK10425 DNase TatD; Provisional
Probab=25.96 E-value=4.4e+02 Score=22.89 Aligned_cols=83 Identities=8% Similarity=0.082 Sum_probs=47.2
Q ss_pred ceEEEeeccCCchhHHHHHHhC--CC-CEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHH
Q 024250 147 TQIHTHMCYSNFNDIIHSIIDM--DA-DVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKM 223 (270)
Q Consensus 147 ~~i~lH~c~g~~~~~~~~l~~~--~v-d~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~ 223 (270)
.++.||+- +.+.+.++.|.+. +. .++--=|. ++.+.++.+.+ .|-.+++|-.-+.. .+ ...++++
T Consensus 122 ~Pv~iH~r-~a~~~~l~iL~~~~~~~~~~i~H~fs-G~~~~~~~~l~---~G~~~si~g~i~~~---~~----~~~~~~~ 189 (258)
T PRK10425 122 MPVFMHCR-DAHERFMALLEPWLDKLPGAVLHCFT-GTREEMQACLA---RGLYIGITGWVCDE---RR----GLELREL 189 (258)
T ss_pred CCeEEEEe-CchHHHHHHHHHhccCCCCeEEEecC-CCHHHHHHHHH---CCCEEEECceeecc---cc----cHHHHHH
Confidence 56789976 7778888887653 22 33322222 34444444443 24455554321111 11 1245566
Q ss_pred hccccCCceEecCCCCCC
Q 024250 224 LAVLETNILWVNPDCGLK 241 (270)
Q Consensus 224 ~~~~~~~~l~vsp~Cgl~ 241 (270)
++.+|.+++++-+|+.+.
T Consensus 190 ~~~ipldrlLlETDaP~l 207 (258)
T PRK10425 190 LPLIPAERLLLETDAPYL 207 (258)
T ss_pred HHhCChHHEEEeccCCCC
Confidence 677888999999998764
No 270
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.86 E-value=3.7e+02 Score=22.00 Aligned_cols=117 Identities=9% Similarity=0.158 Sum_probs=58.8
Q ss_pred HHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCC-CceEEEeeccCCchhHHHHHHhCCCCEE
Q 024250 95 EVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD-TTQIHTHMCYSNFNDIIHSIIDMDADVI 173 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~lH~c~g~~~~~~~~l~~~~vd~l 173 (270)
.++.+ +.|+++|.+-=|... +...+.++.+.+..+. ...+.+|+. +.-+..++.+.++++|.+
T Consensus 17 ~~~~l-~~~v~~iev~~~l~~--------------~~g~~~i~~l~~~~~~~~i~~d~k~~-d~~~~~~~~~~~~Gad~i 80 (206)
T TIGR03128 17 LAEKV-ADYVDIIEIGTPLIK--------------NEGIEAVKEMKEAFPDRKVLADLKTM-DAGEYEAEQAFAAGADIV 80 (206)
T ss_pred HHHHc-ccCeeEEEeCCHHHH--------------HhCHHHHHHHHHHCCCCEEEEEEeec-cchHHHHHHHHHcCCCEE
Confidence 45556 668888777422222 1112233333222221 133445555 211123688899999999
Q ss_pred EEEccCCC---chhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCC
Q 024250 174 TIENSRSD---EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCG 239 (270)
Q Consensus 174 ~ld~~~~~---~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cg 239 (270)
.+...... .+.++..++ .|..+.+++.+..+ .++++ +.+.+. +.+-+.+.|+.+
T Consensus 81 ~vh~~~~~~~~~~~i~~~~~---~g~~~~~~~~~~~t----~~~~~----~~~~~~-g~d~v~~~pg~~ 137 (206)
T TIGR03128 81 TVLGVADDATIKGAVKAAKK---HGKEVQVDLINVKD----KVKRA----KELKEL-GADYIGVHTGLD 137 (206)
T ss_pred EEeccCCHHHHHHHHHHHHH---cCCEEEEEecCCCC----hHHHH----HHHHHc-CCCEEEEcCCcC
Confidence 98876532 223344443 36677776655422 22333 333332 446666766543
No 271
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=25.84 E-value=4.5e+02 Score=22.99 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecc----CccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDE----AALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND 160 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDE----P~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~ 160 (270)
++++.+...++++.|.+.|+|-|.|.. |+... . .+ +--.....+...+++. ++ +++++.+=+.+-..
T Consensus 24 ~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~-~--~~-etvaaM~~i~~~v~~~---~~--~p~GVnvL~nd~~a 94 (254)
T PF03437_consen 24 MEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKR-V--GP-ETVAAMARIAREVRRE---VS--VPVGVNVLRNDPKA 94 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCC-C--CH-HHHHHHHHHHHHHHHh---CC--CCEEeeeecCCCHH
Confidence 466777888889999999999876544 44322 1 11 1111223333333333 22 45677665534444
Q ss_pred HHHHHHhCCCCEEEEEc
Q 024250 161 IIHSIIDMDADVITIEN 177 (270)
Q Consensus 161 ~~~~l~~~~vd~l~ld~ 177 (270)
.+.....++.|-+-++.
T Consensus 95 alaiA~A~ga~FIRv~~ 111 (254)
T PF03437_consen 95 ALAIAAATGADFIRVNV 111 (254)
T ss_pred HHHHHHHhCCCEEEecC
Confidence 56666777777766664
No 272
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=25.66 E-value=4.8e+02 Score=23.24 Aligned_cols=134 Identities=12% Similarity=0.053 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-CchhHHHHHHhCCC
Q 024250 93 KDEVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NFNDIIHSIIDMDA 170 (270)
Q Consensus 93 ~~~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~~~~~~~l~~~~v 170 (270)
+..+++..+.++.+ ||+.+-.+.... . .+..........+...-.+++.||.=-| ++ +.+..-.++++
T Consensus 32 ~avi~AAee~~sPvIlq~~~~~~~~~~-----g----~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~-e~i~~ai~~Gf 101 (288)
T TIGR00167 32 NAVLEAAAEEKSPVIIQFSNGAAKYIA-----G----LGAISAMVKAMSEAYPYGVPVALHLDHGASE-EDCAQAVKAGF 101 (288)
T ss_pred HHHHHHHHHHCCCEEEECCcchhhccC-----C----HHHHHHHHHHHHHhccCCCcEEEECCCCCCH-HHHHHHHHcCC
Confidence 33444555567775 898876554211 1 1223334444333331125678887544 45 44556678999
Q ss_pred CEEEEEccCCCc-hhHHHhhhcc----cCC--CeeeceEecCCC---------CCCCCHHHHHHHHHHHhccccCCceEe
Q 024250 171 DVITIENSRSDE-KLLSVFREGV----KYG--AGIGPGVYDIHS---------PRIPSTEEIADRINKMLAVLETNILWV 234 (270)
Q Consensus 171 d~l~ld~~~~~~-~~l~~l~~~~----~~~--~~l~~GvVd~~~---------~~~e~~e~v~~~i~~~~~~~~~~~l~v 234 (270)
+.+-+|-+..+. ++++.-++.. +.| -.-=+|.|-+.. ....+|++..+-+++- +-..+
T Consensus 102 tSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T------gvD~L 175 (288)
T TIGR00167 102 SSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLT------GVDSL 175 (288)
T ss_pred CEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhcc------CCcEE
Confidence 999999876443 3444333210 111 123355553322 1256788776655432 24466
Q ss_pred cCCCCCCC
Q 024250 235 NPDCGLKT 242 (270)
Q Consensus 235 sp~Cgl~~ 242 (270)
+.+.|-.|
T Consensus 176 AvaiGt~H 183 (288)
T TIGR00167 176 AAAIGNVH 183 (288)
T ss_pred eeccCccc
Confidence 77777666
No 273
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=25.44 E-value=2.2e+02 Score=26.28 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCE-EEeccCccccC-CCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCC
Q 024250 80 PRHETCYQIALAIKDEVEDLEKAGINV-IQIDEAALREG-LPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSN 157 (270)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~l~~~G~~~-IQiDEP~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~ 157 (270)
+.+++.+.|.-.+.+.+=-..++|++. |.=|+|-++.. ++---.. .+.++++++..+.+. -++..|-|+
T Consensus 176 ~~e~lw~nl~yFL~~v~PvAEe~gV~laiHPDDPP~~~~GlpRi~~~--------~e~~~~~~~~~~Sp~-nGltfC~Gs 246 (351)
T PF03786_consen 176 DEEQLWENLKYFLEAVIPVAEEAGVKLAIHPDDPPWPLFGLPRIVST--------AEDLKRILDLVDSPA-NGLTFCTGS 246 (351)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCT-EEEEE--SSSS-BTTB---TTS--------HHHHHHHHHCT-STT-EEEEEECCH
T ss_pred CHHHHHHHHHHHHHhhhHHHHHhCCEEEeCCCCCCCccCCCCcccCC--------HHHHHHHHHhCCCcc-ccEEeecCc
Confidence 567788888888888877788899996 99999988731 2100011 345566666555433 367778886
Q ss_pred ch
Q 024250 158 FN 159 (270)
Q Consensus 158 ~~ 159 (270)
++
T Consensus 247 ~g 248 (351)
T PF03786_consen 247 LG 248 (351)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 274
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.09 E-value=4.6e+02 Score=22.78 Aligned_cols=154 Identities=12% Similarity=0.155 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhC--
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDM-- 168 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~-- 168 (270)
.+.+.+.++.+.|+++|=|--- . . ..+..+...++++.+..+. +.++.+-++ +. +.+..-++.
T Consensus 27 ~~~~~A~~~~~~GAdiIDIG~~-----~-~-~~~~~ee~~r~v~~i~~~~-----~~piSIDT~--~~-~v~e~aL~~~~ 91 (252)
T cd00740 27 EALDVARQQVEGGAQILDLNVD-----Y-G-GLDGVSAMKWLLNLLATEP-----TVPLMLDST--NW-EVIEAGLKCCQ 91 (252)
T ss_pred HHHHHHHHHHHCCCCEEEECCC-----C-C-CCCHHHHHHHHHHHHHHhc-----CCcEEeeCC--cH-HHHHHHHhhCC
Confidence 4445566777889999766531 1 0 1123334556666665443 244555555 22 355555554
Q ss_pred CCCEEEEEccCC-----CchhHHHhhhcccCCCeeeceEecCCCCCCCCHH---HHHH-HHHHHhc--cccCCceEecCC
Q 024250 169 DADVITIENSRS-----DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTE---EIAD-RINKMLA--VLETNILWVNPD 237 (270)
Q Consensus 169 ~vd~l~ld~~~~-----~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e---~v~~-~i~~~~~--~~~~~~l~vsp~ 237 (270)
+++.+. |.... ..+.+..++++ +..+++=-.+.+.. -.+.+ ++.+ .++.+.+ -++.+++++.|.
T Consensus 92 G~~iIN-sIs~~~~~e~~~~~~~~~~~~---~~~vV~m~~~~~g~-p~t~~~~~~~~~~~~~~~~~~~gi~~~~IiiDPg 166 (252)
T cd00740 92 GKCVVN-SINLEDGEERFLKVARLAKEH---GAAVVVLAFDEQGQ-AKTRDKKVEIAERAYEALTEFVGFPPEDIIFDPL 166 (252)
T ss_pred CCcEEE-eCCCCCCccccHHHHHHHHHh---CCCEEEeccCCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCC
Confidence 655432 22111 12233445543 32333322222221 12322 2333 3333332 245689999999
Q ss_pred CCCCCC-CHhHHHHHHHHHHHHHHHHHHH
Q 024250 238 CGLKTR-KYTEVKPALSNMVAAAKLLRTQ 265 (270)
Q Consensus 238 Cgl~~~-~~~~a~~kL~~l~~~a~~~~~~ 265 (270)
-|+... ..+..++-++.|-.. +.++++
T Consensus 167 ig~~~~~~~e~~~~~l~~l~~~-~~~~~~ 194 (252)
T cd00740 167 ILPIATGIEEHRPYALETIDAI-RMIKER 194 (252)
T ss_pred cccccCccHHHHHHHHHHHHHH-HHHHhh
Confidence 998764 444333444444333 344443
No 275
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=24.68 E-value=5.1e+02 Score=23.21 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCEEEe--ccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCC-chhHHHHHHhCCC
Q 024250 94 DEVEDLEKAGINVIQI--DEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSN-FNDIIHSIIDMDA 170 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQi--DEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~-~~~~~~~l~~~~v 170 (270)
..++.+.+.|+..|.| -||.+-. +. .+ .++.+++. .++ ..+.+.|= |. ..+.++.|.++++
T Consensus 52 ~li~~~~~~Gv~~I~~tGGEPllr~-------dl---~~-li~~i~~~-~~l---~~i~itTN-G~ll~~~~~~L~~aGl 115 (329)
T PRK13361 52 WLAQAFTELGVRKIRLTGGEPLVRR-------GC---DQ-LVARLGKL-PGL---EELSLTTN-GSRLARFAAELADAGL 115 (329)
T ss_pred HHHHHHHHCCCCEEEEECcCCCccc-------cH---HH-HHHHHHhC-CCC---ceEEEEeC-hhHHHHHHHHHHHcCC
Confidence 3445566789988877 6776542 21 12 22222221 111 13455544 32 3456778889999
Q ss_pred CEEEEEc
Q 024250 171 DVITIEN 177 (270)
Q Consensus 171 d~l~ld~ 177 (270)
+.+.+..
T Consensus 116 ~~v~ISl 122 (329)
T PRK13361 116 KRLNISL 122 (329)
T ss_pred CeEEEEe
Confidence 8776555
No 276
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=24.35 E-value=4.6e+02 Score=22.57 Aligned_cols=118 Identities=6% Similarity=-0.088 Sum_probs=59.3
Q ss_pred HHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch--hHHHHHHhCCCCEEE
Q 024250 97 EDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN--DIIHSIIDMDADVIT 174 (270)
Q Consensus 97 ~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~--~~~~~l~~~~vd~l~ 174 (270)
+...+.|++++.+++=.-.. ..+.. .+.++++.+... + -+++..| .+ +-+..+++++++.+.
T Consensus 38 ~~~~~~g~~~lhivDLd~a~---g~~~n--------~~~i~~i~~~~~--~--~v~vgGG-Irs~e~~~~~l~~Ga~~vv 101 (243)
T TIGR01919 38 KWWEQGGAEWIHLVDLDAAF---GGGNN--------EMMLEEVVKLLV--V--VEELSGG-RRDDSSLRAALTGGRARVN 101 (243)
T ss_pred HHHHhCCCeEEEEEECCCCC---CCcch--------HHHHHHHHHHCC--C--CEEEcCC-CCCHHHHHHHHHcCCCEEE
Confidence 33467899999998732221 11111 234444444332 2 2455643 32 345678899999988
Q ss_pred EEccC-CCchhHHHhhhcccCCCeeeceEecCC-C---------CCCCCHHHHHHHHHHHhccccCCceEe
Q 024250 175 IENSR-SDEKLLSVFREGVKYGAGIGPGVYDIH-S---------PRIPSTEEIADRINKMLAVLETNILWV 234 (270)
Q Consensus 175 ld~~~-~~~~~l~~l~~~~~~~~~l~~GvVd~~-~---------~~~e~~e~v~~~i~~~~~~~~~~~l~v 234 (270)
+=... .+++.++.+.+. .+..+.+++ |.+ + -|.++.-...+.++++. ..|.+.+++
T Consensus 102 igT~a~~~p~~~~~~~~~--~g~~ivvsl-D~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~-~~g~~~ii~ 168 (243)
T TIGR01919 102 GGTAALENPWWAAAVIRY--GGDIVAVGL-DVLEDGEWHTLGNRGWSDGGGDLEVLERLLD-SGGCSRVVV 168 (243)
T ss_pred ECchhhCCHHHHHHHHHH--ccccEEEEE-EEecCCceEEEECCCeecCCCcHHHHHHHHH-hCCCCEEEE
Confidence 76532 345555555443 123355543 655 2 14444444444444442 334445543
No 277
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.14 E-value=4.8e+02 Score=22.65 Aligned_cols=26 Identities=8% Similarity=0.369 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccc
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALR 115 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~ 115 (270)
..+.+.++.+.+.|++.|.|.+=++.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~ 96 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSME 96 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccC
Confidence 46677788889999999999987766
No 278
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=23.94 E-value=5.1e+02 Score=23.78 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCCEEEeccCc
Q 024250 93 KDEVEDLEKAGINVIQIDEAA 113 (270)
Q Consensus 93 ~~~~~~l~~~G~~~IQiDEP~ 113 (270)
.+.++.+.++|++.|.|-+..
T Consensus 144 ~~~~~~~~~~g~~~i~l~DT~ 164 (363)
T TIGR02090 144 IKVFKRAEEAGADRINIADTV 164 (363)
T ss_pred HHHHHHHHhCCCCEEEEeCCC
Confidence 334455566777777777643
No 279
>PRK00915 2-isopropylmalate synthase; Validated
Probab=23.86 E-value=6.7e+02 Score=24.28 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee-cc-CCchhHHHHHHhCCCC
Q 024250 94 DEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM-CY-SNFNDIIHSIIDMDAD 171 (270)
Q Consensus 94 ~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~-c~-g~~~~~~~~l~~~~vd 171 (270)
+.++.|.++|++.|.+==|..+ +++ .+ .++++.+..+ +.++..++ |. .+....++.+.+++++
T Consensus 30 ~ia~~L~~~Gv~~IE~G~p~~s---------~~d-~~----~v~~i~~~~~-~~~i~a~~r~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 30 QIAKQLERLGVDVIEAGFPASS---------PGD-FE----AVKRIARTVK-NSTVCGLARAVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred HHHHHHHHcCCCEEEEcCCCCC---------hHH-HH----HHHHHHhhCC-CCEEEEEccCCHHHHHHHHHHhhcCCCC
Confidence 3456688899999988655422 111 11 2233322222 23444333 21 1222344444578888
Q ss_pred EEEEEccCCCc-----------hhHHHhhhc----ccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecC
Q 024250 172 VITIENSRSDE-----------KLLSVFREG----VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNP 236 (270)
Q Consensus 172 ~l~ld~~~~~~-----------~~l~~l~~~----~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp 236 (270)
.+++-...++. +.++.+.+. -..+..+.++.-|+. ..+++.+.+.++.+.+ .|.+++.+.-
T Consensus 95 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~---r~d~~~l~~~~~~~~~-~Ga~~i~l~D 170 (513)
T PRK00915 95 RIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDAT---RTDLDFLCRVVEAAID-AGATTINIPD 170 (513)
T ss_pred EEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCC---CCCHHHHHHHHHHHHH-cCCCEEEEcc
Confidence 88877654322 122222211 023556777776654 4578888888888765 4778887777
Q ss_pred CCCCCCCCHhHHHHHHHHHH
Q 024250 237 DCGLKTRKYTEVKPALSNMV 256 (270)
Q Consensus 237 ~Cgl~~~~~~~a~~kL~~l~ 256 (270)
.-|.. +|....+-++.+.
T Consensus 171 TvG~~--~P~~~~~~i~~l~ 188 (513)
T PRK00915 171 TVGYT--TPEEFGELIKTLR 188 (513)
T ss_pred CCCCC--CHHHHHHHHHHHH
Confidence 77765 5654444444443
No 280
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=23.84 E-value=6.6e+02 Score=24.22 Aligned_cols=94 Identities=4% Similarity=-0.021 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch---hHHHHHHhC
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIIDM 168 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~---~~~~~l~~~ 168 (270)
+.+.+.++...|+|+|.=||+...... . .+++-...+.++++++.+.-.....-.+.++.|+.. +..+.+.+.
T Consensus 185 ~A~~~y~~~~GGvD~IKDDE~l~dq~~--~--p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~ 260 (475)
T CHL00040 185 YGRAVYECLRGGLDFTKDDENVNSQPF--M--RWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFAREL 260 (475)
T ss_pred HHHHHHHHHcCCCcccccCccCCCCCC--C--CHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHHHc
Confidence 334455566779999999998544221 1 223335566777777655432212113344433443 345567889
Q ss_pred CCCEEEEEccCCCchhHHHhh
Q 024250 169 DADVITIENSRSDEKLLSVFR 189 (270)
Q Consensus 169 ~vd~l~ld~~~~~~~~l~~l~ 189 (270)
+.+++.+++...+...+..+.
T Consensus 261 G~~~~mv~~~~~G~~al~~l~ 281 (475)
T CHL00040 261 GVPIVMHDYLTGGFTANTSLA 281 (475)
T ss_pred CCceEEEeccccccchHHHHH
Confidence 999999998654444455554
No 281
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=23.64 E-value=4.9e+02 Score=24.50 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc--CCch---hHHHH
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY--SNFN---DIIHS 164 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~--g~~~---~~~~~ 164 (270)
+.+.+.+-++..-|+|.|-=||=..+... . .+++-.....+++++.-+.-. ...+|-|- ++.. ...+.
T Consensus 171 e~~a~~~yE~~~GGvD~iKDDEnl~s~~f--~--~~e~R~~~~m~~i~~aeaeTG---ekk~y~~NITa~~~EM~rrae~ 243 (429)
T COG1850 171 EEYAELAYELLSGGVDFIKDDENLTSPPF--N--RFEERVAKIMEAIDKAEAETG---EKKMYAVNITAPCEEMMRRAEL 243 (429)
T ss_pred HHHHHHHHHHHhcCcceecchhhccCccc--c--cHHHHHHHHHHHHHHHHHhhC---ceEEEEeeccCCHHHHHHHHHH
Confidence 34555666677889999998886555321 1 222223444555555433221 22345441 1122 45567
Q ss_pred HHhCCCCEEEEEccCCCchhHHHhhh
Q 024250 165 IIDMDADVITIENSRSDEKLLSVFRE 190 (270)
Q Consensus 165 l~~~~vd~l~ld~~~~~~~~l~~l~~ 190 (270)
..+++.+.+-+|+...++..+..+++
T Consensus 244 a~elG~~~~midi~~~G~~a~q~lre 269 (429)
T COG1850 244 AAELGANYVMIDIVVTGFTALQYLRE 269 (429)
T ss_pred HHHcCCCEEEEEEEecccHHHHHHHh
Confidence 78899999999987655655666655
No 282
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.41 E-value=5.7e+02 Score=23.26 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch---hHHHHHHh
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN---DIIHSIID 167 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~---~~~~~l~~ 167 (270)
.+.+.++.+.++|++.|.|-+..=.. .|. .+.+.++.+-+.++.+.++.+|+= .|+. .+.-...+
T Consensus 145 ~l~~~a~~~~~~Ga~~i~i~DT~G~~-------~P~----~v~~~v~~l~~~l~~~i~ig~H~H-nnlGla~ANslaAi~ 212 (337)
T PRK08195 145 KLAEQAKLMESYGAQCVYVVDSAGAL-------LPE----DVRDRVRALRAALKPDTQVGFHGH-NNLGLGVANSLAAVE 212 (337)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCC-------CHH----HHHHHHHHHHHhcCCCCeEEEEeC-CCcchHHHHHHHHHH
Confidence 34445666677788887777644321 222 223333333333422355677743 3432 22223467
Q ss_pred CCCCEEEE
Q 024250 168 MDADVITI 175 (270)
Q Consensus 168 ~~vd~l~l 175 (270)
.+++.+.-
T Consensus 213 aGa~~iD~ 220 (337)
T PRK08195 213 AGATRIDG 220 (337)
T ss_pred hCCCEEEe
Confidence 88885433
No 283
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.11 E-value=6.4e+02 Score=23.79 Aligned_cols=166 Identities=8% Similarity=0.087 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCCCEEEeccCccccC-CCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC-Cc-hhHHHHHHh
Q 024250 91 AIKDEVEDLEKAGINVIQIDEAALREG-LPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NF-NDIIHSIID 167 (270)
Q Consensus 91 ~~~~~~~~l~~~G~~~IQiDEP~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g-~~-~~~~~~l~~ 167 (270)
.+.++++.+.+.|++.|.|-+..+... .+... ....+ .+.++.+.+ +++-..+.++++.. ++ .+.++.+.+
T Consensus 181 ~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~-~~~~l----~~Ll~~l~~-~~g~~~ir~~~~~p~~i~~ell~~l~~ 254 (446)
T PRK14337 181 AVLDECRALVDRGAREITLLGQNVNSYGQDKHG-DGTSF----AQLLHKVAA-LPGLERLRFTTPHPKDIAPEVIEAFGE 254 (446)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCccccccCCCC-CCccH----HHHHHHHHh-cCCCcEEEEccCCcccCCHHHHHHHHh
Confidence 455667788889999887766655432 22111 00112 223333322 22112344443321 22 356677777
Q ss_pred CC--CCEEEEEccCCCchhHHHhh----------------hcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccC
Q 024250 168 MD--ADVITIENSRSDEKLLSVFR----------------EGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLET 229 (270)
Q Consensus 168 ~~--vd~l~ld~~~~~~~~l~~l~----------------~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~ 229 (270)
.+ +..+++-.-+.+.+.|+.+. +. ..+-.+..-+|=+. --||.++..+.++-+.+ ++.
T Consensus 255 ~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~-~~~i~i~~d~IvG~--PgET~ed~~~tl~~l~~-~~~ 330 (446)
T PRK14337 255 LPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAA-RPDIALTTDLIVGF--PGETEEDFEQTLEAMRT-VGF 330 (446)
T ss_pred CCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHh-CCCCeEEEeEEEEC--CCCCHHHHHHHHHHHHh-cCC
Confidence 54 67777666443333333322 11 01112222233222 23788888887777644 555
Q ss_pred CceEec---CCCC--CCC----CCHhHHHHHHHHHHHHHHHHHHHH
Q 024250 230 NILWVN---PDCG--LKT----RKYTEVKPALSNMVAAAKLLRTQL 266 (270)
Q Consensus 230 ~~l~vs---p~Cg--l~~----~~~~~a~~kL~~l~~~a~~~~~~~ 266 (270)
+.+.+. |==| .+. .+++...+-++.|.++++..+.+.
T Consensus 331 ~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~ 376 (446)
T PRK14337 331 ASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERW 376 (446)
T ss_pred CeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666653 3222 222 356788888888888888777655
No 284
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=23.05 E-value=5.6e+02 Score=23.12 Aligned_cols=144 Identities=14% Similarity=0.111 Sum_probs=77.0
Q ss_pred HHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCEEE
Q 024250 96 VEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT 174 (270)
Q Consensus 96 ~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~l~ 174 (270)
+++..+.+..+ ||+.+-.+.. . . .+......+...+..+ .+++.||.=-|.--+.+....+++++.+-
T Consensus 34 i~AAe~~~sPvIlq~s~~~~~~-~-----g----~~~~~~~~~~~a~~~~-~VPValHLDHg~~~e~i~~ai~~GftSVM 102 (307)
T PRK05835 34 FEAGNEENSPLFIQASEGAIKY-M-----G----IDMAVGMVKIMCERYP-HIPVALHLDHGTTFESCEKAVKAGFTSVM 102 (307)
T ss_pred HHHHHHHCCCEEEEcCccHHhh-C-----C----hHHHHHHHHHHHHhcC-CCeEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 34444556665 8998765432 1 1 1223334444434332 15688998655333456678899999999
Q ss_pred EEccCCCc-hhHHHhhhcc----cCC--CeeeceEecCC---------CCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 175 IENSRSDE-KLLSVFREGV----KYG--AGIGPGVYDIH---------SPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 175 ld~~~~~~-~~l~~l~~~~----~~~--~~l~~GvVd~~---------~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
+|-++.++ ++++.-++.. ..| -.-=+|.|.+. .....+|+++.+-+++- + -..++.+.
T Consensus 103 ~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~T----g--vD~LAvai 176 (307)
T PRK05835 103 IDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKES----Q--VDYLAPAI 176 (307)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhh----C--CCEEEEcc
Confidence 99876443 3444332210 111 11223444221 12267888887777653 2 23567777
Q ss_pred CCCCC------CHhHHHHHHHHHH
Q 024250 239 GLKTR------KYTEVKPALSNMV 256 (270)
Q Consensus 239 gl~~~------~~~~a~~kL~~l~ 256 (270)
|-.|- .|..-++-|+.+.
T Consensus 177 Gt~HG~Yk~~~~p~L~f~~L~~I~ 200 (307)
T PRK05835 177 GTSHGAFKFKGEPKLDFERLQEVK 200 (307)
T ss_pred CccccccCCCCCCccCHHHHHHHH
Confidence 77662 3444455555543
No 285
>PRK07534 methionine synthase I; Validated
Probab=23.01 E-value=5.8e+02 Score=23.22 Aligned_cols=137 Identities=13% Similarity=0.097 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC---------
Q 024250 86 YQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS--------- 156 (270)
Q Consensus 86 ~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g--------- 156 (270)
++....|.+.++.|.+.|+|+|-+.- ++ +.. ....+..+++.. + .++++...+.
T Consensus 127 ~e~~~~~~~qi~~l~~~gvD~l~~ET------~p----~l~-E~~a~~~~~~~~--~----~Pv~vSft~~~~g~l~~G~ 189 (336)
T PRK07534 127 ALAVEAFHEQAEGLKAGGADVLWVET------IS----APE-EIRAAAEAAKLA--G----MPWCGTMSFDTAGRTMMGL 189 (336)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEec------cC----CHH-HHHHHHHHHHHc--C----CeEEEEEEECCCCeeCCCC
Confidence 34566788889999999999876652 10 111 133444455432 2 3444443321
Q ss_pred CchhHHHHHHhCC--CCEEEEEccCCCchhHHHhhhcccCCCeeeceEe---------cCCCCCCCCHHHHHHHHHHHhc
Q 024250 157 NFNDIIHSIIDMD--ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVY---------DIHSPRIPSTEEIADRINKMLA 225 (270)
Q Consensus 157 ~~~~~~~~l~~~~--vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvV---------d~~~~~~e~~e~v~~~i~~~~~ 225 (270)
++.+.+..+.+++ ++++++--..+....++.+.+.........+|+- |.+..+..+++...+.+.+..+
T Consensus 190 ~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~~~~~~~~~p~~~~~~~~~~~~ 269 (336)
T PRK07534 190 TPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNAGIPKYVDGHIHYDGTPELMAEYAVLARD 269 (336)
T ss_pred cHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCCCcccCCCccccCCCHHHHHHHHHHHHH
Confidence 2224566665554 4899888765322222332221000111344443 2222345678877777766543
Q ss_pred cccCCceEecCCCCCCC
Q 024250 226 VLETNILWVNPDCGLKT 242 (270)
Q Consensus 226 ~~~~~~l~vsp~Cgl~~ 242 (270)
. +--+|.--||..+
T Consensus 270 -~--Ga~iIGGCCGTtP 283 (336)
T PRK07534 270 -A--GARIIGGCCGTMP 283 (336)
T ss_pred -c--CCcEEeeecCCCH
Confidence 2 4567899999886
No 286
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=22.93 E-value=5.4e+02 Score=24.74 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=41.8
Q ss_pred CCchhHHHHHHhCCCCEEEEEccCCCc----hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccc
Q 024250 156 SNFNDIIHSIIDMDADVITIENSRSDE----KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 227 (270)
Q Consensus 156 g~~~~~~~~l~~~~vd~l~ld~~~~~~----~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~ 227 (270)
.+..+.+..|.+.++|.+.+|.++.+. +.++.+++.. .+..+..|+ .-|.+...+.++...+.+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~-~~~~vi~g~-------~~t~~~~~~l~~~G~d~i 291 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALD-LGVPIVAGN-------VVSAEGVRDLLEAGANII 291 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHC-CCCeEEEec-------cCCHHHHHHHHHhCCCEE
Confidence 566678899999999999999988543 2344444421 134566665 356677777666555543
No 287
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=22.88 E-value=5.3e+02 Score=22.73 Aligned_cols=75 Identities=9% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCC
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMD 169 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~ 169 (270)
+.+.+.++++.++|++.|.|-+..=.. .|....+.+....+.. ..++ +.++.|.-+|--..+.-.-.+.+
T Consensus 147 ~~~~~~~~~~~~~G~~~i~l~DT~G~~-------~P~~v~~l~~~l~~~~-~~~~--i~~H~Hnd~Gla~AN~laA~~aG 216 (280)
T cd07945 147 DYVFQLVDFLSDLPIKRIMLPDTLGIL-------SPFETYTYISDMVKRY-PNLH--FDFHAHNDYDLAVANVLAAVKAG 216 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCCC-------CHHHHHHHHHHHHhhC-CCCe--EEEEeCCCCCHHHHHHHHHHHhC
Q ss_pred CCEEE
Q 024250 170 ADVIT 174 (270)
Q Consensus 170 vd~l~ 174 (270)
++.++
T Consensus 217 a~~vd 221 (280)
T cd07945 217 IKGLH 221 (280)
T ss_pred CCEEE
No 288
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=22.85 E-value=3.1e+02 Score=22.43 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEe
Q 024250 82 HETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTH 152 (270)
Q Consensus 82 ~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH 152 (270)
......+..++..-++.+.++|.++| +|+=.+. . .+..+.+++++++.+. .-|+||
T Consensus 62 ~~~~~~~~~~~~~~iaa~a~aG~~VI-vD~v~~~--------~-----~~l~d~l~~~L~~~~v-l~VgV~ 117 (174)
T PF07931_consen 62 GPLFRRLYAAMHAAIAAMARAGNNVI-VDDVFLG--------P-----RWLQDCLRRLLAGLPV-LFVGVR 117 (174)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-EEE-EEE--TT--------T-----HHHHHHHHHHHTTS-E-EEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEE-EecCccC--------c-----HHHHHHHHHHhCCCce-EEEEEE
Confidence 45667777888899999999999853 4432111 0 1235567666676652 346665
No 289
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.80 E-value=4e+02 Score=21.24 Aligned_cols=92 Identities=11% Similarity=0.112 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCC-CCceEEEeeccCCc-----
Q 024250 85 CYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQ-DTTQIHTHMCYSNF----- 158 (270)
Q Consensus 85 ~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~lH~c~g~~----- 158 (270)
-....+.+.+.++...+.|++++.+.=+..... .....+...+.+.+.++.+.+... .++.+.++.+.+..
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~---~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 142 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG---PEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPF 142 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS---TTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEES
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccc---cCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchh
Confidence 344445666667777788999988874421110 111233445666666666655432 24678888876543
Q ss_pred --hhHHHHHHhCCC--CEEEEEccC
Q 024250 159 --NDIIHSIIDMDA--DVITIENSR 179 (270)
Q Consensus 159 --~~~~~~l~~~~v--d~l~ld~~~ 179 (270)
......+.+.+- =++.+|..+
T Consensus 143 ~~~~~~~~l~~~~~~~~~i~~D~~h 167 (213)
T PF01261_consen 143 SVEEIYRLLEEVDSPNVGICFDTGH 167 (213)
T ss_dssp SHHHHHHHHHHHTTTTEEEEEEHHH
T ss_pred hHHHHHHHHhhcCCCcceEEEehHH
Confidence 345556655654 566677644
No 290
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=22.80 E-value=5.8e+02 Score=23.15 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=40.1
Q ss_pred hHHHHHHhCCCCEEEEEccCCCchhHHHhhhcccC-------C--CeeeceEe--cC-CCCCCCCHHHHHHHHHHHhccc
Q 024250 160 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKY-------G--AGIGPGVY--DI-HSPRIPSTEEIADRINKMLAVL 227 (270)
Q Consensus 160 ~~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~-------~--~~l~~GvV--d~-~~~~~e~~e~v~~~i~~~~~~~ 227 (270)
+.+..+.+++++.+++-.-..+.+.|+.+.+.... . +..++-.| |- ...--+|.+++.+.++.+.+ +
T Consensus 99 e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~-l 177 (350)
T PRK08446 99 AWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKE-L 177 (350)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHh-c
Confidence 67889999999999887644222233332210000 0 00111112 22 11234788999988888865 5
Q ss_pred cCCceEe
Q 024250 228 ETNILWV 234 (270)
Q Consensus 228 ~~~~l~v 234 (270)
+++++.+
T Consensus 178 ~~~~is~ 184 (350)
T PRK08446 178 PINHLSA 184 (350)
T ss_pred CCCEEEe
Confidence 6666643
No 291
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=22.68 E-value=5e+02 Score=22.33 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCCEEEeccCccccCCCCCC----ccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc-----CCchh--
Q 024250 92 IKDEVEDLEKAGINVIQIDEAALREGLPLRK----SEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY-----SNFND-- 160 (270)
Q Consensus 92 ~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~-----g~~~~-- 160 (270)
+.+.++.+.++|+.-|.|++=.......... -+.+++.+....+.+ ..++. .+..|+-=|.- ..+.+
T Consensus 86 ~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~-a~~~~-~~~~IiARTDa~~~~~~~~~eai 163 (243)
T cd00377 86 VARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARD-ARDDL-PDFVIIARTDALLAGEEGLDEAI 163 (243)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHH-HHhcc-CCeEEEEEcCchhccCCCHHHHH
Confidence 3444777888999999998755432111000 022223222222222 22221 12322221110 12443
Q ss_pred -HHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHH
Q 024250 161 -IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEI 216 (270)
Q Consensus 161 -~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v 216 (270)
......++++|++.++... +.+.++.+.+. .+..+.+-..+..+ .-+++++
T Consensus 164 ~Ra~ay~~AGAD~v~v~~~~-~~~~~~~~~~~--~~~Pl~~~~~~~~~--~~~~~~l 215 (243)
T cd00377 164 ERAKAYAEAGADGIFVEGLK-DPEEIRAFAEA--PDVPLNVNMTPGGN--LLTVAEL 215 (243)
T ss_pred HHHHHHHHcCCCEEEeCCCC-CHHHHHHHHhc--CCCCEEEEecCCCC--CCCHHHH
Confidence 3345678999999999765 45555666553 23445554444432 2455555
No 292
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.59 E-value=6.1e+02 Score=23.37 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=10.9
Q ss_pred HHHHHHHcCCCEEEeccCc
Q 024250 95 EVEDLEKAGINVIQIDEAA 113 (270)
Q Consensus 95 ~~~~l~~~G~~~IQiDEP~ 113 (270)
.++.+.++|++.|.|-+..
T Consensus 150 ~~~~~~~~Ga~~I~l~DT~ 168 (378)
T PRK11858 150 FAKAAEEAGADRVRFCDTV 168 (378)
T ss_pred HHHHHHhCCCCEEEEeccC
Confidence 3444555677766666543
No 293
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=22.17 E-value=2.7e+02 Score=25.64 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=39.6
Q ss_pred HHHHHHHH--cCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCch--hHHHHHHhCC
Q 024250 94 DEVEDLEK--AGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFN--DIIHSIIDMD 169 (270)
Q Consensus 94 ~~~~~l~~--~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~--~~~~~l~~~~ 169 (270)
+-+++|.+ +|+++|.||= +. . +-+.+.+.++.+-+..+. .. ++.||.- +....|.+++
T Consensus 111 er~~~L~~~~~g~D~iviD~---Ah-------G---hs~~~i~~ik~ik~~~P~-~~----vIaGNV~T~e~a~~Li~aG 172 (346)
T PRK05096 111 EKTKQILALSPALNFICIDV---AN-------G---YSEHFVQFVAKAREAWPD-KT----ICAGNVVTGEMVEELILSG 172 (346)
T ss_pred HHHHHHHhcCCCCCEEEEEC---CC-------C---cHHHHHHHHHHHHHhCCC-Cc----EEEecccCHHHHHHHHHcC
Confidence 44666777 4999999993 11 1 123445555555444442 22 2337763 5667888999
Q ss_pred CCEEEEEc
Q 024250 170 ADVITIEN 177 (270)
Q Consensus 170 vd~l~ld~ 177 (270)
+|++-+=.
T Consensus 173 AD~vKVGI 180 (346)
T PRK05096 173 ADIVKVGI 180 (346)
T ss_pred CCEEEEcc
Confidence 99986544
No 294
>PRK09979 putative rho operon leader peptide; Provisional
Probab=22.01 E-value=39 Score=18.95 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=9.1
Q ss_pred EecCCCCCCCC
Q 024250 233 WVNPDCGLKTR 243 (270)
Q Consensus 233 ~vsp~Cgl~~~ 243 (270)
-++|+|.|++.
T Consensus 10 slnpscrfssa 20 (33)
T PRK09979 10 SLNPSCRFSSA 20 (33)
T ss_pred cCCcccccccc
Confidence 47899999874
No 295
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.98 E-value=5e+02 Score=22.10 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=19.0
Q ss_pred eccC--CchhHHHHHHhCCCCEEEEEc
Q 024250 153 MCYS--NFNDIIHSIIDMDADVITIEN 177 (270)
Q Consensus 153 ~c~g--~~~~~~~~l~~~~vd~l~ld~ 177 (270)
++|. ++.+.+..+.+++++++.+-.
T Consensus 10 ~~~~~~~l~~~l~~~a~~Gf~~VEl~~ 36 (258)
T PRK09997 10 MLFGEYDFLARFEKAAQCGFRGVEFMF 36 (258)
T ss_pred hhccCCCHHHHHHHHHHhCCCEEEEcC
Confidence 4444 455788899999999999854
No 296
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.79 E-value=6.1e+02 Score=23.87 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=36.7
Q ss_pred hHHHHHHhCCCCEEEEEccCCCc----hhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhc
Q 024250 160 DIIHSIIDMDADVITIENSRSDE----KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 225 (270)
Q Consensus 160 ~~~~~l~~~~vd~l~ld~~~~~~----~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~ 225 (270)
+..+.|.++++|.|.+|.++.+. +.++.+++..| +..+.+|.| .|+++....++...+
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p-~~~vi~g~V-------~T~e~a~~l~~aGaD 217 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYP-NLDLIAGNI-------VTKEAALDLISVGAD 217 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCC-CCcEEEEec-------CCHHHHHHHHHcCCC
Confidence 57788999999999999987542 23444444322 344667774 456666655554333
No 297
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=21.37 E-value=6.3e+02 Score=23.01 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCCE-EEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCCCCE
Q 024250 94 DEVEDLEKAGINV-IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADV 172 (270)
Q Consensus 94 ~~~~~l~~~G~~~-IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~vd~ 172 (270)
..+++..+.+..+ ||+.+..+.. .+. + +.......+....+.....+++.||.=-|.--+.+....+++++.
T Consensus 39 avi~AAee~~sPvIlq~s~~~~~~-~g~---~---~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftS 111 (321)
T PRK07084 39 AIIQACVETKSPVILQVSKGARKY-ANA---T---LLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSS 111 (321)
T ss_pred HHHHHHHHhCCCEEEEechhHHhh-CCc---h---HHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCE
Confidence 3344445556665 8998765542 111 1 223334444444433311256788875543335567788999999
Q ss_pred EEEEccCCCc-hhHHHhhhcc----cCCC--eeeceEe----cC---CCCCCCCHHHHHHHHHHHhccccCCceEecCCC
Q 024250 173 ITIENSRSDE-KLLSVFREGV----KYGA--GIGPGVY----DI---HSPRIPSTEEIADRINKMLAVLETNILWVNPDC 238 (270)
Q Consensus 173 l~ld~~~~~~-~~l~~l~~~~----~~~~--~l~~GvV----d~---~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~C 238 (270)
+-+|-++.++ ++++.-++.. +.|- .-=+|-| |. ......+|+++.+-+++- + -..++++.
T Consensus 112 VMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~T----g--vD~LAvai 185 (321)
T PRK07084 112 VMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKT----G--VDSLAISI 185 (321)
T ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHh----C--CCEEeecc
Confidence 9999876443 3443332210 0110 1112222 22 122367899998877762 2 24677777
Q ss_pred CCCCC
Q 024250 239 GLKTR 243 (270)
Q Consensus 239 gl~~~ 243 (270)
|-.|-
T Consensus 186 Gt~HG 190 (321)
T PRK07084 186 GTSHG 190 (321)
T ss_pred ccccc
Confidence 77663
No 298
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=20.96 E-value=6.7e+02 Score=23.21 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=23.4
Q ss_pred HHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeecc
Q 024250 96 VEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCY 155 (270)
Q Consensus 96 ~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~ 155 (270)
++++..+|.++.-| +. +. .+.+.+.+.++...... +. .++|+|.
T Consensus 90 v~aC~~~GTdY~Di-----------TG-Ei-~~fe~~i~~yh~~A~~~--Ga-~Ii~~cG 133 (382)
T COG3268 90 VAACAAAGTDYADI-----------TG-EI-MFFENSIDLYHAQAADA--GA-RIIPGCG 133 (382)
T ss_pred HHHHHHhCCCeeec-----------cc-cH-HHHHHHHHHHHHHHHhc--CC-EEeccCC
Confidence 45677889987322 22 22 23455555544433322 34 4689993
No 299
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=20.90 E-value=2.6e+02 Score=21.11 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=8.5
Q ss_pred chhHHHHHHhCCCCEEE
Q 024250 158 FNDIIHSIIDMDADVIT 174 (270)
Q Consensus 158 ~~~~~~~l~~~~vd~l~ 174 (270)
....+..|.+.++.+|.
T Consensus 16 lGKaINaLte~GITGFy 32 (110)
T PF10126_consen 16 LGKAINALTEGGITGFY 32 (110)
T ss_pred HHHHHHHHHhcCccEEE
Confidence 33444555555555554
No 300
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=20.65 E-value=5.7e+02 Score=22.30 Aligned_cols=75 Identities=17% Similarity=0.277 Sum_probs=38.7
Q ss_pred HHcCCCEEEeccCcccc--CCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh--------HHHHHHhCC
Q 024250 100 EKAGINVIQIDEAALRE--GLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND--------IIHSIIDMD 169 (270)
Q Consensus 100 ~~~G~~~IQiDEP~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~--------~~~~l~~~~ 169 (270)
.++|++.|..-+..-.. +.+.. .. .-.+......+.+..+.+.+. ++.-+-||++.. ....+.+++
T Consensus 29 e~aG~d~i~vGds~~~~~lG~pDt--~~-vtl~em~~~~~~V~r~~~~p~-viaD~~fg~y~~~~~~av~~a~r~~~~aG 104 (254)
T cd06557 29 DEAGVDVILVGDSLGMVVLGYDST--LP-VTLDEMIYHTRAVRRGAPRAL-VVADMPFGSYQTSPEQALRNAARLMKEAG 104 (254)
T ss_pred HHcCCCEEEECHHHHHHHcCCCCC--CC-cCHHHHHHHHHHHHhcCCCCe-EEEeCCCCcccCCHHHHHHHHHHHHHHhC
Confidence 45688887654332211 12111 00 114555666666666665322 444456665532 233344499
Q ss_pred CCEEEEEcc
Q 024250 170 ADVITIENS 178 (270)
Q Consensus 170 vd~l~ld~~ 178 (270)
++++.+|-.
T Consensus 105 a~aVkiEd~ 113 (254)
T cd06557 105 ADAVKLEGG 113 (254)
T ss_pred CeEEEEcCc
Confidence 999999853
No 301
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=20.60 E-value=6.7e+02 Score=23.06 Aligned_cols=96 Identities=11% Similarity=0.208 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchhHHHHHHhCC
Q 024250 90 LAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMD 169 (270)
Q Consensus 90 ~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~~~~~l~~~~ 169 (270)
++..+++++|.++||++|-+.=|... +.+++..+.++.+ ++++--+=| |+. ..-...+.+
T Consensus 34 ~atv~QI~~L~~aGceiVRvavp~~~----------------~A~al~~I~~~~~--iPlVADIHF-d~~-lAl~a~~~g 93 (346)
T TIGR00612 34 DSTVAQIRALEEAGCDIVRVTVPDRE----------------SAAAFEAIKEGTN--VPLVADIHF-DYR-LAALAMAKG 93 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHH----------------HHHhHHHHHhCCC--CCEEEeeCC-CcH-HHHHHHHhc
Confidence 35556789999999999988755332 2345555555554 333322223 342 122346778
Q ss_pred CCEEEEEccC-CCchhHHHhhhc-ccCCCeeeceEecC
Q 024250 170 ADVITIENSR-SDEKLLSVFREG-VKYGAGIGPGVYDI 205 (270)
Q Consensus 170 vd~l~ld~~~-~~~~~l~~l~~~-~~~~~~l~~GvVd~ 205 (270)
+|.+-+.--+ ++.+..+.+-+. -..+..+-+||=.+
T Consensus 94 ~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~G 131 (346)
T TIGR00612 94 VAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHG 131 (346)
T ss_pred cCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 8988887644 222222222211 02466788887433
No 302
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=20.60 E-value=1.2e+02 Score=29.66 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCC-C-CceEEEe--eccCCchhHHHHHHhCCCCEEEEEccCC-C------chhHHHhhhcccCCCe
Q 024250 129 LDWAVHSFRITNCGVQ-D-TTQIHTH--MCYSNFNDIIHSIIDMDADVITIENSRS-D------EKLLSVFREGVKYGAG 197 (270)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~-~~~i~lH--~c~g~~~~~~~~l~~~~vd~l~ld~~~~-~------~~~l~~l~~~~~~~~~ 197 (270)
++.+...+.++.+--. . ...+.|| +|.|++ .|..+|.+.++|.=.-|...- . =+++-..+..++.|..
T Consensus 563 ldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghy-eIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~Gaa 641 (752)
T KOG0515|consen 563 LDLVQRIIYEVTDPSQPNDEGITALHNAICAGHY-EIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAA 641 (752)
T ss_pred HHHHHHHHHhhcCCCCCCccchhHHhhhhhcchh-HHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccce
Confidence 4555555555433111 1 1223456 799988 588999999888777775321 1 1223333333334556
Q ss_pred eeceEecCCCCCCCCHHHHHHHHHHHhccc
Q 024250 198 IGPGVYDIHSPRIPSTEEIADRINKMLAVL 227 (270)
Q Consensus 198 l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~ 227 (270)
|.+--++-..+..|..|+-.+-...|.+++
T Consensus 642 vfAsTlSDmeTa~eKCee~eeGY~~CsqyL 671 (752)
T KOG0515|consen 642 VFASTLSDMETAAEKCEEMEEGYDQCSQYL 671 (752)
T ss_pred EEeeecccccchhhhcchhhhhHHHHHHHH
Confidence 665555544455566666666666666654
No 303
>PRK15108 biotin synthase; Provisional
Probab=20.18 E-value=6.6e+02 Score=22.84 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=40.0
Q ss_pred cCCc-hhHHHHHHhCCCCEEEEEccCCC------------chhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHH
Q 024250 155 YSNF-NDIIHSIIDMDADVITIENSRSD------------EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRIN 221 (270)
Q Consensus 155 ~g~~-~~~~~~l~~~~vd~l~ld~~~~~------------~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~ 221 (270)
.|.. .+.+..|.++++|.+++...... .+-++.+......|..+..|++=+. -|+.++.++.+.
T Consensus 131 ~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl---gEt~ed~v~~~~ 207 (345)
T PRK15108 131 LGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL---GETVKDRAGLLL 207 (345)
T ss_pred CCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC---CCCHHHHHHHHH
Confidence 3544 46788999999999888763311 0122222221112445555655443 478888888887
Q ss_pred HHhc
Q 024250 222 KMLA 225 (270)
Q Consensus 222 ~~~~ 225 (270)
.+.+
T Consensus 208 ~l~~ 211 (345)
T PRK15108 208 QLAN 211 (345)
T ss_pred HHHh
Confidence 7654
No 304
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=20.02 E-value=5.9e+02 Score=22.18 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=4.6
Q ss_pred HHHHHHHcCCC
Q 024250 95 EVEDLEKAGIN 105 (270)
Q Consensus 95 ~~~~l~~~G~~ 105 (270)
.++...+.|..
T Consensus 117 ~i~~a~~~G~~ 127 (262)
T cd07948 117 VIEFVKSKGIE 127 (262)
T ss_pred HHHHHHHCCCe
Confidence 33334444443
Done!