BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024251
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESK
QVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTP
QELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE
QGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCRLF
LVHSECLESNYIASRPFRVNAVSFNALSFA

High Scoring Gene Products

Symbol, full name Information P value
AT3G28760 protein from Arabidopsis thaliana 6.1e-71

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024251
        (270 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2098428 - symbol:AT3G28760 species:3702 "Arabi...   718  6.1e-71   1


>TAIR|locus:2098428 [details] [associations]
            symbol:AT3G28760 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM] [GO:0016491 "oxidoreductase
            activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0019252 "starch biosynthetic process" evidence=RCA]
            InterPro:IPR002812 Pfam:PF01959 PIRSF:PIRSF006655 ProDom:PD017907
            EMBL:CP002686 GO:GO:0016491 GO:GO:0003856 GO:GO:0009073
            EMBL:AK317455 IPI:IPI00657284 RefSeq:NP_001030791.1
            UniGene:At.42738 PRIDE:B9DHA5 EnsemblPlants:AT3G28760.2
            GeneID:822508 KEGG:ath:AT3G28760 TAIR:At3g28760 OMA:NEWSSIA
            PhylomeDB:B9DHA5 ArrayExpress:B9DHA5 Genevestigator:Q2V3R6
            Uniprot:B9DHA5
        Length = 444

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 146/229 (63%), Positives = 174/229 (75%)

Query:    49 KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
             K K+VWIWT  K+VMT AVERGWNTF+F S+N++L+ +WS+IAL+D LFI+E +V D   
Sbjct:    91 KAKKVWIWTMCKEVMTVAVERGWNTFIFSSDNRKLSNEWSSIALMDTLFIEEKKVIDGTG 150

Query:   109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
               V S+ EVSTP+EL+ L   + Q ENIV+D  DW+ IPAEN+VA+ QGS KTVFA+S T
Sbjct:   151 NVVASVFEVSTPEELRSLNIENEQIENIVLDFLDWKSIPAENLVAALQGSEKTVFAVSNT 210

Query:   169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGM 228
             PSEA++FLEALE GLGGI+LK EDVKAVL LKEYFD RNE S+ LSL +AT+TRV + GM
Sbjct:   211 PSEAKLFLEALEHGLGGIILKSEDVKAVLDLKEYFDKRNEESDTLSLTEATITRVQMVGM 270

Query:   229 GDRVCVDLCRL----------------FLVHSECLESNYIASRPFRVNA 261
             GDRVCVDLC L                FLVHSECLESNYI SRPFRVNA
Sbjct:   271 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIESRPFRVNA 319


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      270       262   0.00091  114 3  11 22  0.45    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  200 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  21.50u 0.13s 21.63t   Elapsed:  00:00:00
  Total cpu time:  21.50u 0.13s 21.63t   Elapsed:  00:00:01
  Start:  Thu May  9 20:25:16 2013   End:  Thu May  9 20:25:17 2013

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