Query 024251
Match_columns 270
No_of_seqs 129 out of 165
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01959 DHQS: 3-dehydroquinat 100.0 1.4E-76 3.1E-81 559.2 22.6 218 51-270 1-248 (354)
2 PRK02290 3-dehydroquinate synt 100.0 5.6E-76 1.2E-80 553.3 23.7 213 50-269 1-237 (344)
3 COG1465 Predicted alternative 100.0 5.9E-73 1.3E-77 526.6 21.1 219 49-269 1-269 (376)
4 TIGR03239 GarL 2-dehydro-3-deo 94.1 0.25 5.5E-06 45.4 8.1 90 109-203 12-106 (249)
5 TIGR02311 HpaI 2,4-dihydroxyhe 94.0 0.27 5.9E-06 45.0 8.0 91 110-204 13-107 (249)
6 PRK10558 alpha-dehydro-beta-de 93.7 0.3 6.5E-06 45.0 8.0 90 109-203 19-113 (256)
7 cd00452 KDPG_aldolase KDPG and 93.7 0.47 1E-05 41.1 8.7 111 59-193 18-128 (190)
8 cd00331 IGPS Indole-3-glycerol 93.7 0.91 2E-05 39.6 10.5 112 58-190 82-202 (217)
9 PRK10128 2-keto-3-deoxy-L-rham 92.5 0.54 1.2E-05 43.9 7.8 92 109-203 18-112 (267)
10 PRK05826 pyruvate kinase; Prov 92.5 0.34 7.4E-06 48.6 6.8 136 57-205 173-335 (465)
11 PF03328 HpcH_HpaI: HpcH/HpaI 91.5 1.1 2.3E-05 39.5 8.1 91 111-205 2-108 (221)
12 PRK00278 trpC indole-3-glycero 90.6 3.7 8.1E-05 37.8 11.0 111 59-190 122-241 (260)
13 PTZ00300 pyruvate kinase; Prov 90.3 1 2.2E-05 45.3 7.6 136 57-205 147-308 (454)
14 PRK10558 alpha-dehydro-beta-de 90.0 0.99 2.1E-05 41.7 6.8 38 157-194 143-181 (256)
15 PF00224 PK: Pyruvate kinase, 89.9 0.38 8.3E-06 46.1 4.1 134 57-203 176-335 (348)
16 PRK10128 2-keto-3-deoxy-L-rham 89.7 1.2 2.6E-05 41.6 7.2 131 59-192 79-240 (267)
17 PF02662 FlpD: Methyl-viologen 89.6 0.44 9.5E-06 39.6 3.7 50 169-218 39-101 (124)
18 PF01729 QRPTase_C: Quinolinat 89.4 1.5 3.3E-05 38.3 7.1 42 160-204 81-122 (169)
19 TIGR03239 GarL 2-dehydro-3-deo 89.0 1.2 2.6E-05 40.9 6.5 131 58-191 72-232 (249)
20 cd04729 NanE N-acetylmannosami 88.2 2.1 4.5E-05 37.6 7.2 109 60-191 82-208 (219)
21 PTZ00066 pyruvate kinase; Prov 87.8 2.2 4.8E-05 43.6 8.0 135 58-205 210-371 (513)
22 TIGR01370 cysRS possible cyste 87.0 5.8 0.00013 38.2 10.0 135 39-193 33-171 (315)
23 cd04732 HisA HisA. Phosphorib 86.4 9.7 0.00021 33.2 10.3 131 52-191 75-221 (234)
24 PRK05848 nicotinate-nucleotide 86.2 1.6 3.5E-05 41.0 5.7 52 149-203 169-223 (273)
25 PRK01130 N-acetylmannosamine-6 85.6 4.9 0.00011 35.3 8.1 110 59-191 77-204 (221)
26 PRK01130 N-acetylmannosamine-6 85.2 19 0.0004 31.6 11.6 115 59-188 25-145 (221)
27 TIGR00262 trpA tryptophan synt 84.9 4.4 9.6E-05 37.3 7.8 116 60-191 105-229 (256)
28 PF00072 Response_reg: Respons 84.6 4.7 0.0001 29.8 6.6 80 116-198 28-109 (112)
29 cd00331 IGPS Indole-3-glycerol 84.1 3.8 8.3E-05 35.8 6.7 113 59-192 33-151 (217)
30 PLN02591 tryptophan synthase 83.8 5.3 0.00011 37.1 7.8 116 59-190 95-219 (250)
31 PRK00278 trpC indole-3-glycero 83.5 4.6 9.9E-05 37.2 7.3 120 53-193 64-191 (260)
32 TIGR03151 enACPred_II putative 83.0 3.5 7.5E-05 38.9 6.4 112 58-190 23-137 (307)
33 PLN02762 pyruvate kinase compl 83.0 5 0.00011 41.1 7.9 135 57-204 203-365 (509)
34 PF03060 NMO: Nitronate monoox 82.7 1.4 3.1E-05 41.6 3.7 51 134-191 115-165 (330)
35 PRK06559 nicotinate-nucleotide 82.5 3 6.4E-05 39.9 5.8 42 160-204 198-239 (290)
36 PRK06106 nicotinate-nucleotide 82.5 2.7 5.8E-05 39.9 5.4 42 160-204 195-236 (281)
37 TIGR01064 pyruv_kin pyruvate k 82.1 3.5 7.7E-05 41.4 6.4 135 58-205 172-333 (473)
38 PRK08385 nicotinate-nucleotide 81.7 3 6.5E-05 39.4 5.5 55 147-204 168-224 (278)
39 TIGR02311 HpaI 2,4-dihydroxyhe 81.2 19 0.00041 33.0 10.3 114 52-204 15-160 (249)
40 PRK06096 molybdenum transport 81.2 5.1 0.00011 38.0 6.8 43 159-204 189-231 (284)
41 PLN02623 pyruvate kinase 81.1 5.4 0.00012 41.6 7.5 135 58-205 279-439 (581)
42 PRK07896 nicotinate-nucleotide 80.4 5.5 0.00012 37.9 6.8 55 147-204 185-241 (289)
43 cd04730 NPD_like 2-Nitropropan 80.0 12 0.00026 32.6 8.3 110 58-191 68-187 (236)
44 PRK07428 nicotinate-nucleotide 79.9 6.3 0.00014 37.4 7.0 43 159-204 196-238 (288)
45 PRK06543 nicotinate-nucleotide 79.8 3.8 8.3E-05 38.9 5.5 54 148-204 179-235 (281)
46 CHL00200 trpA tryptophan synth 79.7 8.5 0.00018 35.9 7.7 115 59-191 108-233 (263)
47 PLN02461 Probable pyruvate kin 79.7 5.7 0.00012 40.7 7.0 135 58-205 194-355 (511)
48 TIGR00007 phosphoribosylformim 79.6 31 0.00066 30.3 10.8 131 52-191 74-220 (230)
49 TIGR01334 modD putative molybd 79.2 6.5 0.00014 37.2 6.8 54 148-204 175-230 (277)
50 PRK05458 guanosine 5'-monophos 78.8 8.2 0.00018 37.3 7.5 115 57-189 48-168 (326)
51 PRK06978 nicotinate-nucleotide 78.7 4.5 9.8E-05 38.7 5.6 41 160-203 206-246 (294)
52 PRK00043 thiE thiamine-phospha 77.9 43 0.00092 28.5 11.1 120 61-202 72-207 (212)
53 PF13653 GDPD_2: Glycerophosph 77.9 4.2 9.2E-05 26.6 3.6 26 53-78 2-28 (30)
54 PRK06739 pyruvate kinase; Vali 77.4 8.5 0.00018 37.6 7.2 135 57-204 165-326 (352)
55 TIGR01306 GMP_reduct_2 guanosi 76.7 14 0.00029 35.8 8.3 114 57-189 45-165 (321)
56 cd00564 TMP_TenI Thiamine mono 76.6 7.9 0.00017 32.0 5.9 108 60-189 15-122 (196)
57 COG2197 CitB Response regulato 76.3 23 0.00049 31.4 9.0 70 130-199 44-113 (211)
58 PRK09140 2-dehydro-3-deoxy-6-p 76.1 28 0.0006 31.2 9.6 122 59-203 24-148 (206)
59 TIGR01588 citE citrate lyase, 75.2 24 0.00052 32.9 9.3 85 118-204 12-108 (288)
60 PTZ00314 inosine-5'-monophosph 74.8 10 0.00023 38.3 7.3 113 58-191 241-375 (495)
61 PF11247 DUF2675: Protein of u 74.2 1.9 4.1E-05 35.5 1.6 55 168-223 43-97 (98)
62 PRK10840 transcriptional regul 73.9 29 0.00064 29.4 8.9 67 132-199 49-119 (216)
63 PF02254 TrkA_N: TrkA-N domain 73.2 28 0.00062 26.7 7.9 101 60-188 11-115 (116)
64 PF00290 Trp_syntA: Tryptophan 72.7 11 0.00023 35.4 6.3 114 59-191 104-228 (259)
65 cd04729 NanE N-acetylmannosami 72.3 68 0.0015 28.1 11.0 116 60-189 30-150 (219)
66 PRK11840 bifunctional sulfur c 71.5 13 0.00029 36.2 6.9 101 59-198 183-292 (326)
67 PRK09016 quinolinate phosphori 71.4 9.2 0.0002 36.7 5.7 41 160-203 209-249 (296)
68 PRK10669 putative cation:proto 71.3 22 0.00048 35.7 8.6 104 60-191 430-537 (558)
69 PF03328 HpcH_HpaI: HpcH/HpaI 71.2 33 0.00071 30.2 8.7 132 54-194 5-155 (221)
70 cd02812 PcrB_like PcrB_like pr 70.7 39 0.00084 31.0 9.3 135 53-198 57-216 (219)
71 cd00381 IMPDH IMPDH: The catal 70.1 14 0.0003 35.2 6.5 115 56-191 92-228 (325)
72 cd00288 Pyruvate_Kinase Pyruva 69.3 14 0.00031 37.5 6.8 136 57-205 174-335 (480)
73 TIGR03151 enACPred_II putative 69.2 22 0.00048 33.5 7.7 109 59-191 76-192 (307)
74 PLN02716 nicotinate-nucleotide 69.2 11 0.00025 36.3 5.8 41 160-203 204-259 (308)
75 PLN02765 pyruvate kinase 69.0 20 0.00044 37.0 7.8 136 57-205 206-368 (526)
76 PRK13125 trpA tryptophan synth 68.2 14 0.0003 33.4 5.9 115 58-191 89-216 (244)
77 TIGR01163 rpe ribulose-phospha 67.9 22 0.00047 30.3 6.8 22 58-79 67-88 (210)
78 cd00405 PRAI Phosphoribosylant 67.5 83 0.0018 27.3 10.7 115 59-193 8-131 (203)
79 PRK09958 DNA-binding transcrip 67.3 49 0.0011 26.8 8.5 83 117-202 31-115 (204)
80 PRK09140 2-dehydro-3-deoxy-6-p 67.1 11 0.00023 33.8 4.8 89 111-200 12-101 (206)
81 cd04728 ThiG Thiazole synthase 67.0 20 0.00043 33.8 6.8 36 165-203 183-224 (248)
82 cd04726 KGPDC_HPS 3-Keto-L-gul 67.0 34 0.00074 29.1 7.8 76 109-190 54-134 (202)
83 PRK08114 cystathionine beta-ly 66.8 4.3 9.4E-05 39.7 2.5 123 60-187 67-205 (395)
84 PRK00208 thiG thiazole synthas 66.7 21 0.00046 33.7 6.9 31 164-197 182-217 (250)
85 cd04743 NPD_PKS 2-Nitropropane 66.5 19 0.00042 34.8 6.8 52 132-192 82-133 (320)
86 TIGR01302 IMP_dehydrog inosine 66.0 28 0.0006 34.5 8.0 118 58-190 224-357 (450)
87 COG1908 FrhD Coenzyme F420-red 65.4 8.8 0.00019 33.1 3.8 45 170-214 41-98 (132)
88 PLN02334 ribulose-phosphate 3- 65.3 34 0.00073 30.5 7.7 125 60-203 78-222 (229)
89 PRK10643 DNA-binding transcrip 64.8 65 0.0014 26.2 8.8 66 132-199 44-111 (222)
90 PRK15452 putative protease; Pr 64.5 82 0.0018 31.7 10.9 136 52-201 5-154 (443)
91 PRK10430 DNA-binding transcrip 64.2 59 0.0013 28.2 8.9 67 131-199 48-116 (239)
92 PRK13802 bifunctional indole-3 64.2 71 0.0015 34.1 10.9 137 59-217 122-273 (695)
93 PRK00748 1-(5-phosphoribosyl)- 63.6 51 0.0011 28.8 8.4 22 58-79 84-105 (233)
94 TIGR00078 nadC nicotinate-nucl 63.5 22 0.00048 33.2 6.4 42 159-203 178-219 (265)
95 cd04723 HisA_HisF Phosphoribos 63.2 1E+02 0.0023 27.7 10.5 125 52-190 80-219 (233)
96 PRK05742 nicotinate-nucleotide 62.8 20 0.00042 33.9 6.0 42 159-203 189-230 (277)
97 COG0135 TrpF Phosphoribosylant 62.4 1.3E+02 0.0027 27.6 10.9 142 58-205 10-207 (208)
98 cd04724 Tryptophan_synthase_al 62.2 45 0.00097 30.2 8.0 112 60-190 94-216 (242)
99 cd08570 GDPD_YPL206cp_fungi Gl 62.0 11 0.00025 33.2 4.0 30 48-77 202-232 (234)
100 PRK08649 inosine 5-monophospha 61.8 19 0.00042 35.2 5.9 51 131-189 153-215 (368)
101 PRK07455 keto-hydroxyglutarate 61.6 57 0.0012 28.6 8.3 118 59-203 26-150 (187)
102 cd01572 QPRTase Quinolinate ph 61.4 24 0.00053 32.8 6.3 42 159-203 182-223 (268)
103 PRK15447 putative protease; Pr 61.2 42 0.0009 31.5 7.8 131 56-203 12-153 (301)
104 PRK10336 DNA-binding transcrip 60.9 48 0.001 27.0 7.3 68 131-200 43-112 (219)
105 PRK09206 pyruvate kinase; Prov 60.4 32 0.00069 35.0 7.3 135 58-205 173-334 (470)
106 PRK11475 DNA-binding transcrip 59.9 66 0.0014 28.5 8.5 81 116-198 22-107 (207)
107 PF04131 NanE: Putative N-acet 59.8 69 0.0015 29.3 8.6 112 61-187 3-117 (192)
108 PRK13587 1-(5-phosphoribosyl)- 59.6 72 0.0016 28.9 8.8 122 58-190 86-222 (234)
109 PRK13585 1-(5-phosphoribosyl)- 59.5 76 0.0017 28.0 8.8 108 92-203 5-122 (241)
110 PRK14114 1-(5-phosphoribosyl)- 59.5 74 0.0016 29.2 9.0 131 53-190 76-224 (241)
111 TIGR03128 RuMP_HxlA 3-hexulose 59.3 75 0.0016 27.3 8.5 91 110-203 54-156 (206)
112 TIGR01768 GGGP-family geranylg 58.9 43 0.00092 30.9 7.3 117 69-191 70-210 (223)
113 PRK03659 glutathione-regulated 58.4 68 0.0015 33.0 9.4 102 60-189 413-518 (601)
114 PRK01033 imidazole glycerol ph 58.1 1E+02 0.0023 28.1 9.7 118 58-190 84-227 (258)
115 COG4697 Uncharacterized protei 57.9 8.9 0.00019 37.1 2.8 21 218-238 176-201 (319)
116 PF02581 TMP-TENI: Thiamine mo 57.8 38 0.00082 28.9 6.4 105 59-191 14-124 (180)
117 PF09872 DUF2099: Uncharacteri 57.7 1E+02 0.0023 29.4 9.7 116 59-190 77-195 (258)
118 cd01568 QPRTase_NadC Quinolina 57.6 27 0.00058 32.4 5.9 42 159-203 181-222 (269)
119 TIGR01182 eda Entner-Doudoroff 57.4 71 0.0015 28.9 8.4 122 59-204 22-147 (204)
120 PRK13585 1-(5-phosphoribosyl)- 57.3 45 0.00098 29.4 7.0 115 58-191 33-171 (241)
121 cd04732 HisA HisA. Phosphorib 57.3 78 0.0017 27.6 8.4 104 93-201 3-117 (234)
122 PRK06354 pyruvate kinase; Prov 57.2 36 0.00079 35.5 7.3 124 57-193 178-322 (590)
123 PRK09483 response regulator; P 56.9 85 0.0018 25.7 8.2 81 116-199 32-114 (217)
124 cd08561 GDPD_cytoplasmic_ScUgp 56.8 18 0.0004 32.1 4.5 31 48-78 210-241 (249)
125 cd01573 modD_like ModD; Quinol 56.8 29 0.00064 32.4 6.0 41 160-203 184-224 (272)
126 TIGR01859 fruc_bis_ald_ fructo 56.8 58 0.0013 30.6 8.0 150 53-203 77-245 (282)
127 PRK11517 transcriptional regul 56.7 53 0.0011 27.0 6.9 67 131-199 43-110 (223)
128 PLN02274 inosine-5'-monophosph 56.6 34 0.00074 34.8 6.8 67 120-189 247-317 (505)
129 cd08564 GDPD_GsGDE_like Glycer 56.6 16 0.00035 33.0 4.2 31 48-78 221-256 (265)
130 PRK14024 phosphoribosyl isomer 56.1 99 0.0022 27.9 9.1 123 58-191 85-224 (241)
131 PF00218 IGPS: Indole-3-glycer 56.1 1E+02 0.0022 28.9 9.4 104 59-188 120-237 (254)
132 PRK13856 two-component respons 56.0 99 0.0022 26.3 8.7 68 131-199 44-112 (241)
133 cd08562 GDPD_EcUgpQ_like Glyce 55.9 17 0.00036 31.5 4.0 30 48-77 197-227 (229)
134 TIGR00735 hisF imidazoleglycer 55.9 1.3E+02 0.0028 27.3 9.8 128 58-191 84-231 (254)
135 cd08575 GDPD_GDE4_like Glycero 55.1 16 0.00034 33.3 3.9 32 48-79 229-261 (264)
136 PRK04302 triosephosphate isome 55.1 1.1E+02 0.0024 27.1 9.2 28 160-190 174-203 (223)
137 COG0084 TatD Mg-dependent DNas 54.7 6 0.00013 36.9 1.1 23 58-80 18-40 (256)
138 cd08565 GDPD_pAtGDE_like Glyce 54.2 18 0.00038 32.4 4.0 30 50-79 201-231 (235)
139 PRK09427 bifunctional indole-3 54.1 57 0.0012 32.9 7.9 79 116-201 218-303 (454)
140 PRK00043 thiE thiamine-phospha 54.1 38 0.00083 28.8 5.9 105 60-189 24-131 (212)
141 TIGR00007 phosphoribosylformim 53.6 1.1E+02 0.0023 26.9 8.7 104 96-202 5-117 (230)
142 PRK00748 1-(5-phosphoribosyl)- 53.3 84 0.0018 27.4 8.0 104 93-201 4-118 (233)
143 TIGR03128 RuMP_HxlA 3-hexulose 53.3 1.5E+02 0.0032 25.5 10.9 18 62-79 68-85 (206)
144 PRK02083 imidazole glycerol ph 53.1 1.1E+02 0.0024 27.5 8.9 105 93-203 7-120 (253)
145 PRK13111 trpA tryptophan synth 52.5 72 0.0016 29.6 7.8 114 59-191 106-230 (258)
146 PRK09454 ugpQ cytoplasmic glyc 52.1 20 0.00042 32.2 3.9 32 48-79 207-239 (249)
147 TIGR01387 cztR_silR_copR heavy 52.1 1.2E+02 0.0026 24.6 8.2 67 131-199 41-109 (218)
148 TIGR03787 marine_sort_RR prote 51.7 92 0.002 25.8 7.6 68 131-199 43-113 (227)
149 cd02809 alpha_hydroxyacid_oxid 51.5 82 0.0018 29.3 8.0 72 117-191 180-258 (299)
150 cd08564 GDPD_GsGDE_like Glycer 51.5 28 0.00061 31.5 4.8 45 148-197 212-261 (265)
151 TIGR01949 AroFGH_arch predicte 51.4 43 0.00092 30.4 6.0 132 62-205 95-249 (258)
152 PRK10046 dpiA two-component re 51.3 94 0.002 26.8 7.9 66 131-198 49-116 (225)
153 CHL00148 orf27 Ycf27; Reviewed 51.3 55 0.0012 27.2 6.2 66 132-199 50-116 (240)
154 cd08563 GDPD_TtGDE_like Glycer 51.3 21 0.00045 31.3 3.9 31 48-78 198-229 (230)
155 cd08601 GDPD_SaGlpQ_like Glyce 51.3 26 0.00057 31.2 4.6 32 48-79 216-248 (256)
156 TIGR00693 thiE thiamine-phosph 51.0 89 0.0019 26.5 7.6 104 60-188 16-122 (196)
157 cd08582 GDPD_like_2 Glyceropho 50.8 23 0.00049 31.1 4.1 31 48-78 199-230 (233)
158 PRK05718 keto-hydroxyglutarate 50.7 1.1E+02 0.0024 27.7 8.5 121 59-203 29-153 (212)
159 cd08583 PI-PLCc_GDPD_SF_unchar 50.5 22 0.00048 31.5 3.9 31 48-78 203-234 (237)
160 PF03060 NMO: Nitronate monoox 50.3 69 0.0015 30.3 7.5 107 61-191 104-221 (330)
161 PRK06806 fructose-bisphosphate 50.3 26 0.00057 32.9 4.6 136 53-191 77-232 (281)
162 PRK06552 keto-hydroxyglutarate 50.2 1.2E+02 0.0026 27.4 8.6 123 59-203 27-153 (213)
163 COG3836 HpcH 2,4-dihydroxyhept 50.1 28 0.0006 33.1 4.6 133 57-193 76-240 (255)
164 TIGR02154 PhoB phosphate regul 50.1 1E+02 0.0022 25.1 7.6 65 132-198 46-114 (226)
165 cd04730 NPD_like 2-Nitropropan 50.0 1.3E+02 0.0029 26.1 8.7 51 132-190 80-130 (236)
166 PF00107 ADH_zinc_N: Zinc-bind 49.6 1.2E+02 0.0026 23.4 9.3 110 51-180 15-129 (130)
167 cd08581 GDPD_like_1 Glyceropho 49.5 25 0.00054 31.4 4.1 30 48-77 197-227 (229)
168 cd08609 GDPD_GDE3 Glycerophosp 49.5 24 0.00052 33.7 4.2 38 48-87 243-281 (315)
169 PRK08187 pyruvate kinase; Vali 49.3 82 0.0018 32.3 8.2 137 57-205 312-475 (493)
170 PHA00440 host protein H-NS-int 49.3 10 0.00022 31.3 1.5 55 168-223 43-97 (98)
171 PRK11083 DNA-binding response 49.0 66 0.0014 26.3 6.3 66 132-199 47-114 (228)
172 cd08610 GDPD_GDE6 Glycerophosp 48.8 26 0.00057 33.4 4.4 38 48-87 243-281 (316)
173 cd03174 DRE_TIM_metallolyase D 48.7 1.9E+02 0.0041 25.4 10.2 55 150-204 119-185 (265)
174 PLN02274 inosine-5'-monophosph 48.5 72 0.0016 32.6 7.7 123 54-191 244-382 (505)
175 cd00429 RPE Ribulose-5-phospha 48.5 62 0.0013 27.4 6.2 22 58-79 68-89 (211)
176 PRK10360 DNA-binding transcrip 48.0 1.4E+02 0.0031 23.9 9.1 65 132-199 47-111 (196)
177 cd04726 KGPDC_HPS 3-Keto-L-gul 48.0 1.7E+02 0.0037 24.8 9.1 112 60-190 67-187 (202)
178 TIGR01919 hisA-trpF 1-(5-phosp 48.0 1.6E+02 0.0035 26.9 9.2 127 58-190 84-226 (243)
179 cd04722 TIM_phosphate_binding 47.9 1.4E+02 0.0031 23.8 9.1 17 64-80 78-94 (200)
180 TIGR03275 methan_mark_8 putati 47.6 1.4E+02 0.003 28.6 8.8 128 59-203 77-212 (259)
181 cd08612 GDPD_GDE4 Glycerophosp 47.4 29 0.00064 32.2 4.4 32 48-79 259-291 (300)
182 TIGR01769 GGGP geranylgeranylg 47.3 80 0.0017 28.6 7.0 85 101-188 109-204 (205)
183 PRK13958 N-(5'-phosphoribosyl) 47.2 2.1E+02 0.0046 25.5 10.9 114 58-191 9-131 (207)
184 PRK06843 inosine 5-monophospha 47.2 41 0.0009 33.6 5.6 68 119-189 151-222 (404)
185 COG0469 PykF Pyruvate kinase [ 47.1 18 0.00039 37.0 3.1 135 57-204 175-336 (477)
186 PRK13957 indole-3-glycerol-pho 46.2 2.3E+02 0.005 26.6 10.1 110 59-190 113-231 (247)
187 cd08612 GDPD_GDE4 Glycerophosp 46.1 44 0.00096 31.0 5.4 45 149-198 251-296 (300)
188 PRK10766 DNA-binding transcrip 46.0 86 0.0019 25.8 6.6 65 132-198 46-111 (221)
189 PRK08883 ribulose-phosphate 3- 46.0 59 0.0013 29.4 6.0 127 60-203 71-215 (220)
190 PRK09836 DNA-binding transcrip 45.7 81 0.0017 26.2 6.4 66 132-199 44-111 (227)
191 COG2022 ThiG Uncharacterized e 45.5 20 0.00043 34.1 3.0 45 148-196 174-223 (262)
192 PRK05567 inosine 5'-monophosph 45.2 1.1E+02 0.0024 30.7 8.3 117 59-190 229-361 (486)
193 KOG0538 Glycolate oxidase [Ene 45.1 30 0.00065 34.2 4.2 136 48-205 118-274 (363)
194 PRK05826 pyruvate kinase; Prov 44.9 44 0.00095 33.9 5.5 63 131-194 185-249 (465)
195 PRK06247 pyruvate kinase; Prov 44.8 73 0.0016 32.6 7.0 132 58-205 174-331 (476)
196 TIGR01305 GMP_reduct_1 guanosi 44.7 27 0.00059 34.4 3.9 68 119-189 105-178 (343)
197 PRK13586 1-(5-phosphoribosyl)- 44.6 2.5E+02 0.0053 25.6 10.7 123 58-188 83-217 (232)
198 PRK10529 DNA-binding transcrip 44.2 1.5E+02 0.0032 24.5 7.8 67 132-200 45-112 (225)
199 PRK08072 nicotinate-nucleotide 44.1 68 0.0015 30.3 6.3 41 160-203 189-229 (277)
200 cd00452 KDPG_aldolase KDPG and 43.8 70 0.0015 27.6 5.9 81 112-198 7-92 (190)
201 PLN02623 pyruvate kinase 43.7 32 0.0007 36.0 4.4 61 132-194 291-353 (581)
202 cd07896 Adenylation_kDNA_ligas 43.7 60 0.0013 27.4 5.4 30 165-194 130-160 (174)
203 cd08579 GDPD_memb_like Glycero 43.7 30 0.00066 30.1 3.7 30 48-77 188-218 (220)
204 PTZ00300 pyruvate kinase; Prov 43.6 38 0.00083 34.3 4.9 62 131-194 159-222 (454)
205 PRK02290 3-dehydroquinate synt 43.4 16 0.00034 36.1 2.0 34 169-202 13-46 (344)
206 cd08609 GDPD_GDE3 Glycerophosp 43.3 46 0.00099 31.8 5.1 48 150-202 236-284 (315)
207 COG1465 Predicted alternative 43.2 21 0.00045 35.2 2.8 34 168-201 13-47 (376)
208 KOG3997 Major apurinic/apyrimi 43.1 6.8 0.00015 37.1 -0.4 10 231-240 175-184 (281)
209 PRK11107 hybrid sensory histid 43.1 2.4E+02 0.0053 29.1 10.6 136 59-199 617-780 (919)
210 smart00654 eIF6 translation in 42.9 58 0.0013 29.4 5.4 55 184-249 109-164 (200)
211 COG0157 NadC Nicotinate-nucleo 42.8 59 0.0013 31.3 5.7 41 160-203 189-229 (280)
212 PRK15479 transcriptional regul 42.7 91 0.002 25.3 6.2 67 132-200 44-112 (221)
213 cd01571 NAPRTase_B Nicotinate 42.5 49 0.0011 31.4 5.1 46 160-205 185-240 (302)
214 PRK07315 fructose-bisphosphate 42.2 69 0.0015 30.4 6.1 135 53-191 80-234 (293)
215 PRK10537 voltage-gated potassi 41.6 2.1E+02 0.0046 28.2 9.5 71 113-192 285-359 (393)
216 cd08610 GDPD_GDE6 Glycerophosp 41.6 45 0.00099 31.9 4.8 54 142-201 229-283 (316)
217 PRK10816 DNA-binding transcrip 41.5 1.8E+02 0.0039 24.0 7.9 67 131-199 43-111 (223)
218 cd08579 GDPD_memb_like Glycero 41.5 2.4E+02 0.0051 24.5 9.3 64 140-203 77-147 (220)
219 cd00958 DhnA Class I fructose- 41.0 76 0.0017 27.9 5.8 79 118-201 140-232 (235)
220 PF01053 Cys_Met_Meta_PP: Cys/ 40.9 9.1 0.0002 37.4 0.0 118 61-184 61-194 (386)
221 PF01959 DHQS: 3-dehydroquinat 40.7 17 0.00037 35.9 1.9 30 172-201 15-44 (354)
222 PRK07226 fructose-bisphosphate 40.4 97 0.0021 28.4 6.6 71 131-205 172-253 (267)
223 COG0352 ThiE Thiamine monophos 40.4 1.4E+02 0.0029 27.3 7.4 103 60-190 24-132 (211)
224 cd08574 GDPD_GDE_2_3_6 Glycero 40.3 35 0.00076 30.9 3.7 30 48-77 221-251 (252)
225 PRK07455 keto-hydroxyglutarate 40.2 77 0.0017 27.8 5.7 78 113-196 16-98 (187)
226 PF11303 DUF3105: Protein of u 40.0 42 0.0009 28.5 3.8 33 173-205 41-74 (130)
227 PRK07695 transcriptional regul 39.9 2.5E+02 0.0054 24.3 9.9 100 60-190 18-123 (201)
228 COG0159 TrpA Tryptophan syntha 39.9 2.3E+02 0.005 27.0 9.1 114 60-191 112-235 (265)
229 PRK05581 ribulose-phosphate 3- 39.8 86 0.0019 27.0 5.9 29 51-79 64-93 (220)
230 PRK15447 putative protease; Pr 39.1 91 0.002 29.3 6.3 81 118-201 15-105 (301)
231 PRK13957 indole-3-glycerol-pho 39.1 2.2E+02 0.0047 26.7 8.7 116 59-195 63-184 (247)
232 cd08606 GDPD_YPL110cp_fungi Gl 39.0 59 0.0013 29.6 5.0 45 149-198 235-282 (286)
233 PRK09468 ompR osmolarity respo 38.8 2.2E+02 0.0047 23.9 8.0 67 131-199 48-116 (239)
234 PF00977 His_biosynth: Histidi 38.7 2.2E+02 0.0048 25.5 8.5 127 52-189 75-220 (229)
235 PRK02615 thiamine-phosphate py 38.7 1.7E+02 0.0036 28.7 8.2 102 60-189 160-267 (347)
236 PRK11143 glpQ glycerophosphodi 38.4 46 0.00099 32.3 4.3 51 145-198 289-349 (355)
237 PRK02083 imidazole glycerol ph 38.2 3E+02 0.0065 24.7 9.6 30 58-87 84-116 (253)
238 PRK09581 pleD response regulat 38.1 1.9E+02 0.004 26.7 8.1 64 132-197 198-265 (457)
239 PRK14725 pyruvate kinase; Prov 37.9 1.1E+02 0.0025 32.3 7.3 133 58-206 433-593 (608)
240 cd08556 GDPD Glycerophosphodie 37.9 45 0.00097 27.4 3.7 30 48-77 158-188 (189)
241 PRK10610 chemotaxis regulatory 37.7 1.4E+02 0.003 21.0 5.8 29 170-198 90-118 (129)
242 cd04731 HisF The cyclase subun 37.7 2.9E+02 0.0063 24.5 9.8 128 58-191 81-225 (243)
243 PF05690 ThiG: Thiazole biosyn 37.6 37 0.0008 32.2 3.4 46 147-196 166-216 (247)
244 PRK06512 thiamine-phosphate py 37.6 1.8E+02 0.004 26.2 7.9 102 60-190 29-139 (221)
245 PRK06801 hypothetical protein; 37.4 1.5E+02 0.0032 28.2 7.5 144 58-203 85-248 (286)
246 PRK14114 1-(5-phosphoribosyl)- 37.4 3.3E+02 0.0071 25.0 9.5 104 93-202 4-118 (241)
247 PRK04046 translation initiatio 37.2 51 0.0011 30.2 4.2 114 118-248 74-208 (222)
248 PRK09935 transcriptional regul 36.8 1.3E+02 0.0028 24.3 6.1 66 132-199 49-116 (210)
249 TIGR03815 CpaE_hom_Actino heli 36.8 98 0.0021 28.7 6.1 64 131-199 18-81 (322)
250 cd08555 PI-PLCc_GDPD_SF Cataly 36.7 46 0.001 28.3 3.7 28 49-76 148-177 (179)
251 PRK10403 transcriptional regul 36.4 1.5E+02 0.0032 23.7 6.4 66 132-199 52-119 (215)
252 PRK03562 glutathione-regulated 35.9 2.9E+02 0.0063 28.7 9.9 109 60-193 413-522 (621)
253 cd08580 GDPD_Rv2277c_like Glyc 35.9 54 0.0012 30.4 4.3 32 48-79 227-260 (263)
254 cd08561 GDPD_cytoplasmic_ScUgp 35.8 75 0.0016 28.2 5.0 50 142-197 196-246 (249)
255 PRK15369 two component system 35.8 1.3E+02 0.0029 23.7 6.0 66 132-199 49-116 (211)
256 TIGR01588 citE citrate lyase, 35.7 3.7E+02 0.008 25.1 11.0 124 58-194 12-157 (288)
257 PRK10161 transcriptional regul 35.5 2.6E+02 0.0056 23.2 8.6 67 131-199 45-115 (229)
258 cd08567 GDPD_SpGDE_like Glycer 35.3 51 0.0011 29.1 3.9 31 48-78 229-260 (263)
259 cd08608 GDPD_GDE2 Glycerophosp 35.2 60 0.0013 31.6 4.6 37 48-86 221-258 (351)
260 cd00381 IMPDH IMPDH: The catal 35.0 1.7E+02 0.0038 27.9 7.6 111 58-188 46-162 (325)
261 TIGR00186 rRNA_methyl_3 rRNA m 35.0 1.8E+02 0.004 26.3 7.4 77 115-192 45-125 (237)
262 PRK05967 cystathionine beta-ly 34.8 24 0.00052 34.6 1.8 115 63-184 72-202 (395)
263 cd02810 DHOD_DHPD_FMN Dihydroo 34.7 3.5E+02 0.0076 24.5 9.6 135 56-190 19-197 (289)
264 TIGR00323 eIF-6 translation in 34.1 69 0.0015 29.3 4.6 54 184-248 148-203 (215)
265 TIGR01304 IMP_DH_rel_2 IMP deh 34.1 97 0.0021 30.5 5.9 56 131-189 154-216 (369)
266 PRK10100 DNA-binding transcrip 33.8 2.7E+02 0.0057 24.8 8.2 65 132-199 52-120 (216)
267 PRK06843 inosine 5-monophospha 33.5 3.4E+02 0.0075 27.2 9.6 120 53-191 148-287 (404)
268 PF03102 NeuB: NeuB family; I 33.4 1.8E+02 0.0039 27.0 7.2 75 111-188 70-145 (241)
269 cd00527 IF6 Ribosome anti-asso 33.2 71 0.0015 29.3 4.5 89 147-248 100-209 (220)
270 TIGR03572 WbuZ glycosyl amidat 33.2 3.4E+02 0.0073 23.9 10.1 134 52-190 76-228 (232)
271 cd08601 GDPD_SaGlpQ_like Glyce 32.7 88 0.0019 27.9 5.0 45 149-198 208-253 (256)
272 PRK13435 response regulator; P 32.1 2.4E+02 0.0053 21.9 8.4 62 132-199 50-114 (145)
273 PF06506 PrpR_N: Propionate ca 32.0 2E+02 0.0042 24.6 6.8 124 59-191 22-152 (176)
274 PRK04128 1-(5-phosphoribosyl)- 32.0 2E+02 0.0044 26.0 7.2 76 118-201 30-116 (228)
275 cd08556 GDPD Glycerophosphodie 31.6 2.3E+02 0.0049 23.2 6.9 58 145-203 48-111 (189)
276 PRK09206 pyruvate kinase; Prov 31.5 69 0.0015 32.7 4.5 97 97-194 146-248 (470)
277 PF07085 DRTGG: DRTGG domain; 31.5 85 0.0018 24.4 4.1 40 49-88 39-85 (105)
278 PLN02495 oxidoreductase, actin 31.4 2.8E+02 0.0061 27.5 8.6 48 143-190 92-148 (385)
279 PTZ00314 inosine-5'-monophosph 31.1 1.2E+02 0.0027 30.7 6.2 73 111-188 232-309 (495)
280 PRK11173 two-component respons 31.0 2.4E+02 0.0052 23.8 7.1 70 132-204 47-119 (237)
281 COG0352 ThiE Thiamine monophos 30.8 4.2E+02 0.009 24.2 10.3 90 108-203 104-206 (211)
282 cd00288 Pyruvate_Kinase Pyruva 30.5 80 0.0017 32.2 4.8 61 132-194 187-249 (480)
283 cd06311 PBP1_ABC_sugar_binding 29.8 1.2E+02 0.0027 26.1 5.2 29 168-196 45-74 (274)
284 PRK10955 DNA-binding transcrip 29.5 3.2E+02 0.007 22.5 8.5 66 132-199 44-110 (232)
285 cd08608 GDPD_GDE2 Glycerophosp 29.2 93 0.002 30.4 4.8 54 142-201 207-261 (351)
286 cd00377 ICL_PEPM Members of th 29.1 1.9E+02 0.0041 26.4 6.5 44 159-202 142-194 (243)
287 PRK09581 pleD response regulat 28.8 4.5E+02 0.0098 24.2 9.0 66 132-199 46-115 (457)
288 TIGR00735 hisF imidazoleglycer 28.8 2.9E+02 0.0062 25.0 7.6 105 93-203 7-120 (254)
289 CHL00162 thiG thiamin biosynth 28.5 73 0.0016 30.5 3.8 46 148-197 181-231 (267)
290 cd08581 GDPD_like_1 Glyceropho 28.4 4.3E+02 0.0092 23.5 8.7 130 60-202 16-154 (229)
291 cd06295 PBP1_CelR Ligand bindi 28.3 1.7E+02 0.0038 25.1 5.9 22 171-192 52-74 (275)
292 PRK07807 inosine 5-monophospha 28.2 79 0.0017 32.1 4.3 54 131-187 238-294 (479)
293 cd08580 GDPD_Rv2277c_like Glyc 28.1 75 0.0016 29.5 3.8 41 149-194 219-261 (263)
294 PTZ00136 eukaryotic translatio 28.1 96 0.0021 29.3 4.5 54 184-248 157-212 (247)
295 PRK06015 keto-hydroxyglutarate 28.0 4.6E+02 0.0099 23.8 9.0 120 60-203 19-142 (201)
296 TIGR00734 hisAF_rel hisA/hisF 27.9 4.3E+02 0.0093 23.7 8.5 106 93-200 4-122 (221)
297 PRK10864 putative methyltransf 27.6 3.5E+02 0.0077 26.6 8.5 124 48-191 104-232 (346)
298 cd08606 GDPD_YPL110cp_fungi Gl 27.6 98 0.0021 28.2 4.4 31 48-78 243-276 (286)
299 PRK05096 guanosine 5'-monophos 27.5 57 0.0012 32.3 3.0 66 119-187 106-177 (346)
300 TIGR01064 pyruv_kin pyruvate k 27.4 1.2E+02 0.0025 30.8 5.3 63 131-194 183-247 (473)
301 PRK08662 nicotinate phosphorib 27.3 1.3E+02 0.0029 29.2 5.5 33 160-192 201-237 (343)
302 cd08575 GDPD_GDE4_like Glycero 26.8 77 0.0017 28.8 3.6 37 149-188 221-258 (264)
303 PRK10651 transcriptional regul 26.0 3.5E+02 0.0075 21.7 8.3 66 132-199 52-119 (216)
304 PF02662 FlpD: Methyl-viologen 25.8 62 0.0013 26.8 2.6 19 59-77 41-59 (124)
305 cd00429 RPE Ribulose-5-phospha 25.4 2.7E+02 0.0058 23.5 6.5 62 132-195 25-93 (211)
306 TIGR01303 IMP_DH_rel_1 IMP deh 25.4 83 0.0018 31.9 3.8 73 111-187 216-292 (475)
307 cd00156 REC Signal receiver do 24.8 1.9E+02 0.0041 18.9 4.4 29 170-198 79-107 (113)
308 PRK15452 putative protease; Pr 24.7 4.2E+02 0.0091 26.7 8.6 86 113-202 6-107 (443)
309 PRK14024 phosphoribosyl isomer 24.5 5.2E+02 0.011 23.2 9.4 106 92-203 6-121 (241)
310 TIGR03884 sel_bind_Methan sele 24.3 1.3E+02 0.0027 23.9 3.9 26 162-187 20-47 (74)
311 PLN02334 ribulose-phosphate 3- 23.9 5.1E+02 0.011 22.9 9.0 109 60-188 23-145 (229)
312 cd08563 GDPD_TtGDE_like Glycer 23.7 4.9E+02 0.011 22.7 9.9 130 59-203 17-153 (230)
313 cd08605 GDPD_GDE5_like_1_plant 23.7 1E+02 0.0022 28.1 3.7 30 48-77 248-280 (282)
314 cd00727 malate_synt_A Malate s 23.6 4E+02 0.0086 27.8 8.3 130 59-205 76-241 (511)
315 TIGR01302 IMP_dehydrog inosine 23.5 3.7E+02 0.008 26.8 7.9 67 120-189 223-293 (450)
316 PRK08072 nicotinate-nucleotide 23.5 1.4E+02 0.0031 28.2 4.8 73 108-190 188-261 (277)
317 TIGR00995 3a0901s06TIC22 chlor 23.2 1.7E+02 0.0036 28.1 5.2 85 95-181 181-270 (270)
318 cd00405 PRAI Phosphoribosylant 23.2 4.9E+02 0.011 22.5 11.1 120 51-191 52-183 (203)
319 cd00945 Aldolase_Class_I Class 23.1 1.6E+02 0.0035 24.1 4.6 33 159-191 48-87 (201)
320 COG4022 Uncharacterized protei 23.1 1.9E+02 0.0041 27.8 5.5 100 61-175 84-184 (286)
321 cd06309 PBP1_YtfQ_like Peripla 23.1 1.9E+02 0.0042 24.8 5.2 25 170-194 43-67 (273)
322 PF03009 GDPD: Glycerophosphor 22.8 91 0.002 26.3 3.1 31 48-78 220-253 (256)
323 PRK14725 pyruvate kinase; Prov 22.8 1.3E+02 0.0029 31.9 4.8 76 119-194 431-512 (608)
324 PRK05567 inosine 5'-monophosph 22.6 1.5E+02 0.0032 29.7 5.0 66 120-188 227-296 (486)
325 cd08576 GDPD_like_SMaseD_PLD G 22.5 1.4E+02 0.003 28.4 4.5 29 51-79 210-239 (265)
326 COG4464 CapC Capsular polysacc 22.2 78 0.0017 30.1 2.7 107 58-195 21-142 (254)
327 cd06299 PBP1_LacI_like_13 Liga 22.1 2.9E+02 0.0063 23.4 6.1 24 170-193 43-66 (265)
328 COG1879 RbsB ABC-type sugar tr 22.0 1.4E+02 0.0029 27.1 4.2 32 170-201 79-110 (322)
329 PRK02615 thiamine-phosphate py 21.9 7.3E+02 0.016 24.3 9.4 76 108-190 240-323 (347)
330 cd08559 GDPD_periplasmic_GlpQ_ 21.8 91 0.002 28.9 3.1 30 48-77 254-294 (296)
331 PF13407 Peripla_BP_4: Peripla 21.7 98 0.0021 26.4 3.1 29 170-198 43-71 (257)
332 cd00958 DhnA Class I fructose- 21.6 5.6E+02 0.012 22.5 10.3 26 58-83 22-47 (235)
333 PRK12290 thiE thiamine-phospha 21.5 3.5E+02 0.0075 27.7 7.3 109 53-189 213-327 (437)
334 PF03740 PdxJ: Pyridoxal phosp 21.3 2.3E+02 0.0049 26.8 5.6 38 168-205 21-64 (239)
335 PRK10710 DNA-binding transcrip 21.2 3.1E+02 0.0067 22.7 5.9 38 160-198 82-119 (240)
336 COG3769 Predicted hydrolase (H 21.2 3.2E+02 0.0069 26.3 6.5 130 56-185 25-176 (274)
337 COG0648 Nfo Endonuclease IV [D 21.1 41 0.00089 32.1 0.7 19 60-78 17-35 (280)
338 cd08607 GDPD_GDE5 Glycerophosp 20.4 1.3E+02 0.0029 27.3 3.9 30 48-77 256-288 (290)
339 COG1794 RacX Aspartate racemas 20.4 1.3E+02 0.0028 28.3 3.8 127 56-191 57-197 (230)
340 PRK08745 ribulose-phosphate 3- 20.1 2.8E+02 0.0062 25.3 5.9 126 60-202 75-218 (223)
341 PRK10425 DNase TatD; Provision 20.0 51 0.0011 30.4 1.1 23 58-80 16-38 (258)
No 1
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=1.4e-76 Score=559.20 Aligned_cols=218 Identities=37% Similarity=0.626 Sum_probs=203.1
Q ss_pred cEEEE-----EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeee---cCCcc------ccCCCCeEEEEEE
Q 024251 51 KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFI---KEGEV------YDSGDRRVGSIIE 116 (270)
Q Consensus 51 K~vWi-----w~~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~---~~g~~------~~~~gk~v~~~v~ 116 (270)
|++|| |+++|++||+|||+|||+|++++++.+++++|+++.++.+..- +++.. ++..|+.+|.+++
T Consensus 1 K~~Wi~~~~~w~~~k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 80 (354)
T PF01959_consen 1 KEVWIDADGPWEERKEVVTAALESGVDGVVVDDEDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVE 80 (354)
T ss_pred CeEEEEcCCChhhHHHHHHHHHHcCCCEEEECHhHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEE
Confidence 78999 8889999999999999999999999999999999999885332 22332 3578999999999
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHH
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v 196 (270)
|.++++++.++.+.+.++|+|++++||||||||||||++|+++++|++.++|++||+++|++||+|+|||+|+|+|+++|
T Consensus 81 i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei 160 (354)
T PF01959_consen 81 ITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEI 160 (354)
T ss_pred ECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccceeeeEEEEEEEEeccccceeEEeccc----------------eeEEeeccccCCCCCCCCceec
Q 024251 197 LALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCR----------------LFLVHSECLESNYIASRPFRVN 260 (270)
Q Consensus 197 ~~l~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcS----------------mFLVhsEt~e~pYva~RPFRVN 260 (270)
+++++++.. .++++++|++|+||+|+|+|||||||||||| ||||||||++||||++||||||
T Consensus 161 ~~~~~~~~~--~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVN 238 (354)
T PF01959_consen 161 KALVALLKE--RSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRVN 238 (354)
T ss_pred HHHHHHHhh--ccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceEe
Confidence 999999865 3677899999999999999999999999999 9999999999999999999999
Q ss_pred cCcceeeccC
Q 024251 261 AVSFNALSFA 270 (270)
Q Consensus 261 AGaVHaYv~a 270 (270)
|||||||++.
T Consensus 239 AGaVHaYv~~ 248 (354)
T PF01959_consen 239 AGAVHAYVLM 248 (354)
T ss_pred cCcceeEEEc
Confidence 9999999973
No 2
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=5.6e-76 Score=553.34 Aligned_cols=213 Identities=33% Similarity=0.541 Sum_probs=198.5
Q ss_pred CcEEEEEeCc-----hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCC---ccccCCCCeEEEEEEecChh
Q 024251 50 PKRVWIWTES-----KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEG---EVYDSGDRRVGSIIEVSTPQ 121 (270)
Q Consensus 50 ~K~vWiw~~~-----Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g---~~~~~~gk~v~~~v~V~~~e 121 (270)
||++|||.++ |++||+|||||||+|+|++++++.+++|+++..+ ..+++ ..++.+|++++.|++|.+++
T Consensus 1 mK~vWi~~~~~~~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i~~~---~~~~~~~~~~~~~~~~~~~~~v~i~~~~ 77 (344)
T PRK02290 1 MKFVWIKARPDWEERKEVVTTALESGVDGVVVDEEDVERVRELGRIKVA---ADDPDADAVVISGSAGEDGAYVEIRDKE 77 (344)
T ss_pred CceEEEEcCCCchhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCeeEE---EEcCCcchhhhcccCCceEEEEEECCHH
Confidence 6999999988 9999999999999999999777777777777544 44554 34678899999999999999
Q ss_pred hhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 122 ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 122 d~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
|++.++.+.+.++++|++++||||||||||||+| +++++|++.++|++||+++|++||+|+|||+|+|+|+++|+++++
T Consensus 78 ~e~~a~~~~~~~~~viv~~~dW~iIPlEnlIA~~-~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~ 156 (344)
T PRK02290 78 DEEFAAELAKEVDYVIVEGRDWTIIPLENLIADL-GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVA 156 (344)
T ss_pred HHHHHHHhhccCCEEEEECCCCcEecHHHHHhhh-cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHH
Confidence 9999999888889999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhccccccccceeeeEEEEEEEEeccccceeEEeccc----------------eeEEeeccccCCCCCCCCceeccCcce
Q 024251 202 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCR----------------LFLVHSECLESNYIASRPFRVNAVSFN 265 (270)
Q Consensus 202 ~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcS----------------mFLVhsEt~e~pYva~RPFRVNAGaVH 265 (270)
+++. ++++++|++|+||+|+|+|||||||||||| ||||||||++||||++|||||||||||
T Consensus 157 ~~~~---~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVh 233 (344)
T PRK02290 157 LIEE---AREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRVNAGAVH 233 (344)
T ss_pred HHhc---cCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccCCCeeEecCcce
Confidence 8855 888999999999999999999999999999 999999999999999999999999999
Q ss_pred eecc
Q 024251 266 ALSF 269 (270)
Q Consensus 266 aYv~ 269 (270)
||++
T Consensus 234 aYv~ 237 (344)
T PRK02290 234 AYVR 237 (344)
T ss_pred eEEE
Confidence 9996
No 3
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-73 Score=526.62 Aligned_cols=219 Identities=34% Similarity=0.565 Sum_probs=201.3
Q ss_pred CCcEEEE------EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeee-----eee--cCC--------------
Q 024251 49 KPKRVWI------WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP-----LFI--KEG-------------- 101 (270)
Q Consensus 49 ~~K~vWi------w~~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~-----l~~--~~g-------------- 101 (270)
.||++|+ |++.|..+|+|||+|+|++++++++.+++++||++.++.| +++ ++|
T Consensus 1 ~mK~vWl~a~~~~WeekK~~it~alEaG~d~vvv~~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~ 80 (376)
T COG1465 1 MMKEVWLLAEDESWEEKKKRITAALEAGVDVVVVRPADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISG 80 (376)
T ss_pred CcceEEEEcCCcchhHhhHHHHHHHhcCCCEEEECHHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccc
Confidence 4899999 7779999999999999999999999999999999999987 333 443
Q ss_pred -------ccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHH
Q 024251 102 -------EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI 174 (270)
Q Consensus 102 -------~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~ 174 (270)
..+...|+.++.|+.|.++++++.++....-++|+|+.++||||||||||||++|+.+++|||.|+|++||++
T Consensus 81 s~di~~~~~~~~~G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWkiIPLENlIA~l~~e~~kliA~V~saeEA~v 160 (376)
T COG1465 81 SADIEALRELMDRGHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKIIPLENLIADLQHEKVKLIAGVKSAEEARV 160 (376)
T ss_pred cccHHHHHHhhhcCcceEEEEEEcCccchHHHHhhccccceEEEEcCcceEeeHHHHHHHhhccceEEEEEeccHHHHHH
Confidence 2345679999999999999996656555445799999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCeEEEecCCHHHHHHHHHhhccccccccceeeeEEEEEEEEeccccceeEEeccc----------------
Q 024251 175 FLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCR---------------- 238 (270)
Q Consensus 175 ~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcS---------------- 238 (270)
+|++||+|+|||+|.++|+++|+++.++++. .++++++|++|+||+|+|+|+||||||||||
T Consensus 161 A~eTLE~GaDgVll~~~d~~eIk~~~~~~~e--~~~E~~eL~~a~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~g 238 (376)
T COG1465 161 ALETLEKGADGVLLDSDDPEEIKKTAEVVEE--AESERLELVTATVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRG 238 (376)
T ss_pred HHHHHhccCceEEeCCCCHHHHHHHHHHHHH--hccceeEEEEEEEEEEeecCCCceEEEeeecccccCCceEeecccCc
Confidence 9999999999999999999999999998865 5778999999999999999999999999999
Q ss_pred eeEEeeccccCCCCCCCCceeccCcceeecc
Q 024251 239 LFLVHSECLESNYIASRPFRVNAVSFNALSF 269 (270)
Q Consensus 239 mFLVhsEt~e~pYva~RPFRVNAGaVHaYv~ 269 (270)
||||||||.|||||++|||||||||||||++
T Consensus 239 mFlVhsEs~espYVAaRPFRVNAG~VhaYi~ 269 (376)
T COG1465 239 MFLVHSESEESPYVAARPFRVNAGAVHAYIR 269 (376)
T ss_pred EEEEecccccCcccccCceeecccceeEEEE
Confidence 9999999999999999999999999999986
No 4
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=94.07 E-value=0.25 Score=45.36 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=71.3
Q ss_pred CeEEEEEEecChhhhhhhccccCCCceEEEeCC----CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccC
Q 024251 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (270)
Q Consensus 109 k~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~----DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~D 184 (270)
..+|++..+.++.-.|.++.. .-|+|+|+.. |+. -+++++.+++..+...+..+.+.+. ..+-.+|+.|++
T Consensus 12 ~~~G~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~--~~~~~~~a~~~~g~~~~VRvp~~~~-~~i~r~LD~Ga~ 86 (249)
T TIGR03239 12 TLIGCWSALGNPITTEVLGLA--GFDWLLLDGEHAPNDVL--TFIPQLMALKGSASAPVVRPPWNEP-VIIKRLLDIGFY 86 (249)
T ss_pred ceEEEEEcCCCcHHHHHHHhc--CCCEEEEecccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhcCCCC
Confidence 457888889999887777653 4899999776 444 4688998888888889999988755 556889999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 024251 185 GIVLK-VEDVKAVLALKEYF 203 (270)
Q Consensus 185 GVvl~-~~d~~~v~~l~~~~ 203 (270)
||+++ .++++|++++.+..
T Consensus 87 gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 87 NFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred EEEecCcCCHHHHHHHHHHc
Confidence 99986 45788888877654
No 5
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=93.97 E-value=0.27 Score=44.97 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=68.5
Q ss_pred eEEEEEEecChhhhhhhccccCCCceEEEeCCCCeeec---hhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeE
Q 024251 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP---AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (270)
Q Consensus 110 ~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIP---lENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGV 186 (270)
.+|+++.+.++.-.|.+... ..|+++|+..+=. +- +++++.+.+..+...+..+++.+.. .+..+|+.|+|||
T Consensus 13 ~~g~~~~~~~p~~~e~~~~~--g~D~v~iDlEH~~-~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~-~i~~~Ld~Ga~gI 88 (249)
T TIGR02311 13 QIGLWLGLADPYAAEICAGA--GFDWLLIDGEHAP-NDVRTILSQLQALAPYPSSPVVRPAIGDPV-LIKQLLDIGAQTL 88 (249)
T ss_pred eEEEEEeCCCcHHHHHHHhc--CCCEEEEeccCCC-CCHHHHHHHHHHHHhcCCCcEEECCCCCHH-HHHHHhCCCCCEE
Confidence 46888888898887776653 4899999887433 23 3445655555566889999888765 5688999999999
Q ss_pred EEe-cCCHHHHHHHHHhhc
Q 024251 187 VLK-VEDVKAVLALKEYFD 204 (270)
Q Consensus 187 vl~-~~d~~~v~~l~~~~~ 204 (270)
+++ .+++++++++.+.+.
T Consensus 89 ivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 89 LVPMIETAEQAEAAVAATR 107 (249)
T ss_pred EecCcCCHHHHHHHHHHcC
Confidence 996 568999988887764
No 6
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=93.75 E-value=0.3 Score=45.04 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=70.5
Q ss_pred CeEEEEEEecChhhhhhhccccCCCceEEEeCC----CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccC
Q 024251 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (270)
Q Consensus 109 k~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~----DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~D 184 (270)
..+|.+..+.++.-.|.++.. .-|+|+|+.. ||. -+++++.+++..+...+..+.+.+. ..+..+|+.|++
T Consensus 19 ~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~--~~~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~Ga~ 93 (256)
T PRK10558 19 VQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVS--TFIPQLMALKGSASAPVVRVPTNEP-VIIKRLLDIGFY 93 (256)
T ss_pred ceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhCCCCC
Confidence 457888888898876666653 4899999765 454 4678888888888899999988866 455789999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 024251 185 GIVLK-VEDVKAVLALKEYF 203 (270)
Q Consensus 185 GVvl~-~~d~~~v~~l~~~~ 203 (270)
||+++ .+++++++++.+..
T Consensus 94 giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 94 NFLIPFVETAEEARRAVAST 113 (256)
T ss_pred eeeecCcCCHHHHHHHHHHc
Confidence 99986 45788888876654
No 7
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.73 E-value=0.47 Score=41.05 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=72.2
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
-++++.++++.|++.+-++-.+....+.+..+....| +..+| -..|.+.++++.+... +++.++.
T Consensus 18 ~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~------------~~~iG-ag~v~~~~~~~~a~~~--Ga~~i~~ 82 (190)
T cd00452 18 ALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP------------EALIG-AGTVLTPEQADAAIAA--GAQFIVS 82 (190)
T ss_pred HHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC------------CCEEE-EEeCCCHHHHHHHHHc--CCCEEEc
Confidence 4688999999999999987644332222222221111 12223 2266788887776654 4567765
Q ss_pred eCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
-..| +.++...+..+..++..+.|++|++.+ ++.|+|-|-+.|.++
T Consensus 83 p~~~------~~~~~~~~~~~~~~i~gv~t~~e~~~A---~~~Gad~i~~~p~~~ 128 (190)
T cd00452 83 PGLD------PEVVKAANRAGIPLLPGVATPTEIMQA---LELGADIVKLFPAEA 128 (190)
T ss_pred CCCC------HHHHHHHHHcCCcEECCcCCHHHHHHH---HHCCCCEEEEcCCcc
Confidence 4433 345555555567888999999998766 578999999987664
No 8
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=93.65 E-value=0.91 Score=39.65 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=67.0
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch--hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 58 ESKQVMTAAVERGWNTFVFLSENQ--QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~~--e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
.+.+.+..++|.|+|++++...+. +..+++-+-. ..-|.. ..+.+.+.++++++... ..++
T Consensus 82 ~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~-------------~~~g~~--~~v~v~~~~e~~~~~~~--g~~~ 144 (217)
T cd00331 82 IDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA-------------RELGME--VLVEVHDEEELERALAL--GAKI 144 (217)
T ss_pred cCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH-------------HHcCCe--EEEEECCHHHHHHHHHc--CCCE
Confidence 345689999999999998653221 2222221110 011322 35677888887776553 5788
Q ss_pred EEEeCCCCeeec--h---hhhhhcccCCCceEE--EEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 136 IVIDLPDWQVIP--A---ENIVASFQGSGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 136 vvv~~~DWtiIP--l---ENlIA~~q~~~~~i~--a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
+.+..+|-+..+ + +++...+. .+..++ ..++++++++.++ +.|+|||++-.
T Consensus 145 i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~---~~Ga~gvivGs 202 (217)
T cd00331 145 IGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTPEDVKRLA---EAGADAVLIGE 202 (217)
T ss_pred EEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHH---HcCCCEEEECH
Confidence 888876644443 2 33433321 233555 4688889988665 55999998753
No 9
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=92.54 E-value=0.54 Score=43.90 Aligned_cols=92 Identities=8% Similarity=0.059 Sum_probs=71.6
Q ss_pred CeEEEEEEecChhhhhhhccccCCCceEEEeCC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeE
Q 024251 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (270)
Q Consensus 109 k~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGV 186 (270)
..+|.++.+.++.-.|.++.. .-|+|+||.. ....--+++++.+++..+...+..+.+.+. ..+..+|+.|++||
T Consensus 18 ~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~GA~GI 94 (267)
T PRK10128 18 VQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSK-PLIKQVLDIGAQTL 94 (267)
T ss_pred ceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCH-HHHHHHhCCCCCee
Confidence 456888889999887777654 4999999776 333445678888888888888999988765 55588999999999
Q ss_pred EEec-CCHHHHHHHHHhh
Q 024251 187 VLKV-EDVKAVLALKEYF 203 (270)
Q Consensus 187 vl~~-~d~~~v~~l~~~~ 203 (270)
+++- ++++|++++.+..
T Consensus 95 ivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 95 LIPMVDTAEQARQVVSAT 112 (267)
T ss_pred EecCcCCHHHHHHHHHhc
Confidence 9974 5788888777654
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=92.47 E-value=0.34 Score=48.61 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=89.2
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCC-eEEEEEEecChhhhhhhccccCCCc
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk-~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
+.+++.+.-||+.|+|+++++- .+++.++++.++ +...|. .+.++.+|.+++-++.+-.-....|
T Consensus 173 e~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~-------------l~~~~~~~~~iiakIEt~eav~nldeI~~~~D 239 (465)
T PRK05826 173 EKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRL-------------LREAGCPHAKIIAKIERAEAVDNIDEIIEASD 239 (465)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCcCceEEEEEcCHHHHHhHHHHHHHcC
Confidence 3578899999999999999985 345566655432 233344 5678889999998888766555578
Q ss_pred eEEEeCCCCe-eechhhh-------hhcccCCCceEE-E----------EcCCHHHHHHHHHHHhcccCeEEEecCC---
Q 024251 135 NIVIDLPDWQ-VIPAENI-------VASFQGSGKTVF-A----------ISKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (270)
Q Consensus 135 ~vvv~~~DWt-iIPlENl-------IA~~q~~~~~i~-a----------~v~~~~eA~~~l~~LE~G~DGVvl~~~d--- 192 (270)
-++|--.|=. =+|.|.+ ++.....+.-++ | ...+-.|+--...+...|+|+|+|.-+.
T Consensus 240 gImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G 319 (465)
T PRK05826 240 GIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAG 319 (465)
T ss_pred EEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccC
Confidence 8887433322 2455543 333333333333 2 3455678888899999999999999653
Q ss_pred --H-HHHHHHHHhhcc
Q 024251 193 --V-KAVLALKEYFDG 205 (270)
Q Consensus 193 --~-~~v~~l~~~~~~ 205 (270)
| ..|+-+.+++.+
T Consensus 320 ~yPveaV~~m~~I~~~ 335 (465)
T PRK05826 320 KYPVEAVEAMARICKG 335 (465)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 2 446666666543
No 11
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=91.49 E-value=1.1 Score=39.51 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=62.3
Q ss_pred EEEEEEecChhhhhhhccccCCCceEEEeCCCCee---------echhhhhhcc---cCCCceEEEEcCCHHHHHHHHH-
Q 024251 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---------IPAENIVASF---QGSGKTVFAISKTPSEAQIFLE- 177 (270)
Q Consensus 111 v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWti---------IPlENlIA~~---q~~~~~i~a~v~~~~eA~~~l~- 177 (270)
.+.++...+++-++.+.. ...|+++++..| .+ .=+++++..+ ++.+..++..+++.+... ...
T Consensus 2 s~l~vp~~~~~~~~~a~~--~g~D~vilDlEd-~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~-~~~D 77 (221)
T PF03328_consen 2 SGLFVPANSPKMLEKAAA--SGADFVILDLED-GVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPH-IERD 77 (221)
T ss_dssp EEEEEESTSHHHHHHHHT--TCSSEEEEESST-TSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHH-HHHH
T ss_pred EEEEEeCCCHHHHHHHHh--cCCCEEEEeCcc-cCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcch-hhhh
Confidence 456777778777666554 468999998887 33 2234444433 334568999999976432 222
Q ss_pred --HHhcccCeEEEec-CCHHHHHHHHHhhcc
Q 024251 178 --ALEQGLGGIVLKV-EDVKAVLALKEYFDG 205 (270)
Q Consensus 178 --~LE~G~DGVvl~~-~d~~~v~~l~~~~~~ 205 (270)
+|+.|+|||+++- +++++++++.+.+..
T Consensus 78 l~~l~~g~~gI~lP~ves~~~~~~~~~~~~~ 108 (221)
T PF03328_consen 78 LEALDAGADGIVLPKVESAEDARQAVAALRY 108 (221)
T ss_dssp HHHHHTTSSEEEETT--SHHHHHHHHHHHSH
T ss_pred hhhcccCCCeeeccccCcHHHHHHHHHHHhh
Confidence 9999999999974 578999888887754
No 12
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=90.59 E-value=3.7 Score=37.76 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=66.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~--~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
+.-.+..|.+.|+|.+.+.... .+..+++-+.+ ..-|. -+++++.+.++++++... +.+++
T Consensus 122 ~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a-------------~~lGl--~~lvevh~~~E~~~A~~~--gadiI 184 (260)
T PRK00278 122 DPYQIYEARAAGADAILLIVAALDDEQLKELLDYA-------------HSLGL--DVLVEVHDEEELERALKL--GAPLI 184 (260)
T ss_pred CHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHH-------------HHcCC--eEEEEeCCHHHHHHHHHc--CCCEE
Confidence 3446899999999998876432 11111111110 11132 367789999988775543 57788
Q ss_pred EEeCCCCeeec-----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 137 VIDLPDWQVIP-----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 137 vv~~~DWtiIP-----lENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
-++.+|=+.-+ .++|+..+.+ ...+++ ...++++++.++ +.|+|||++-+
T Consensus 185 gin~rdl~~~~~d~~~~~~l~~~~p~-~~~vIaegGI~t~ed~~~~~---~~Gad~vlVGs 241 (260)
T PRK00278 185 GINNRNLKTFEVDLETTERLAPLIPS-DRLVVSESGIFTPEDLKRLA---KAGADAVLVGE 241 (260)
T ss_pred EECCCCcccccCCHHHHHHHHHhCCC-CCEEEEEeCCCCHHHHHHHH---HcCCCEEEECH
Confidence 88765543332 3444444321 124554 567888888765 56999998744
No 13
>PTZ00300 pyruvate kinase; Provisional
Probab=90.30 E-value=1 Score=45.30 Aligned_cols=136 Identities=17% Similarity=0.162 Sum_probs=91.4
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
+.|++.+.-|++.|+|.+.++- .+++.++++.++. ...|+.+.++.+|.+++-++.+-.-....|-
T Consensus 147 ekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l-------------~~~~~~~~IiaKIEt~eav~nldeI~~~~Dg 213 (454)
T PTZ00300 147 AKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKAL-------------GAKGGDIMIICKIENHQGVQNIDSIIEESDG 213 (454)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH-------------HhcCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 3578899999999999998874 3355555554441 1235567789999999998887776667888
Q ss_pred EEEeCCC-Ceeechhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecCC----
Q 024251 136 IVIDLPD-WQVIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (270)
Q Consensus 136 vvv~~~D-WtiIPlENlIA-------~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~d---- 192 (270)
++|--.| .-=||.|++-+ .+...+.-+|.. ..+-.|+--...+.--|+|+|+|.-+.
T Consensus 214 ImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~ 293 (454)
T PTZ00300 214 IMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGK 293 (454)
T ss_pred EEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCC
Confidence 8884444 45577777543 222222233321 234477788888999999999997663
Q ss_pred -H-HHHHHHHHhhcc
Q 024251 193 -V-KAVLALKEYFDG 205 (270)
Q Consensus 193 -~-~~v~~l~~~~~~ 205 (270)
| +.|+-+.+++.+
T Consensus 294 yP~eaV~~m~~I~~~ 308 (454)
T PTZ00300 294 YPNEVVQYMARICLE 308 (454)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3 456666666643
No 14
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=90.02 E-value=0.99 Score=41.66 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=32.4
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHhc-ccCeEEEecCCHH
Q 024251 157 GSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (270)
Q Consensus 157 ~~~~~i~a~v~~~~eA~~~l~~LE~-G~DGVvl~~~d~~ 194 (270)
+..+.+++.+.+++-..-+-+++.. |+||+.+-|.|..
T Consensus 143 n~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs 181 (256)
T PRK10558 143 NKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLA 181 (256)
T ss_pred ccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHH
Confidence 4567899999999999888888875 8999999988765
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=89.86 E-value=0.38 Score=46.10 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=85.7
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
++|++.+.-|++.|+|.+-+.- .+++.+.++.++ +++.|+.+..+.+|.+++.++.+-.-+..+|-
T Consensus 176 ekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~-------------l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDg 242 (348)
T PF00224_consen 176 EKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKI-------------LGEKGKDIKIIAKIETKEAVENLDEILEASDG 242 (348)
T ss_dssp HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHH-------------HTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSE
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHH-------------hhhcCcccceeeccccHHHHhhHHHHhhhcCe
Confidence 3689999999999999776653 224455554443 44456677789999999999888777777888
Q ss_pred EEEeCCCC-eeechhh-------hhhcccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecC-----
Q 024251 136 IVIDLPDW-QVIPAEN-------IVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVE----- 191 (270)
Q Consensus 136 vvv~~~DW-tiIPlEN-------lIA~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~----- 191 (270)
++|.-.|= --||+|. ||+.....+.-+|.. ..+-.|.--...+...|+|||+|..+
T Consensus 243 imiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~ 322 (348)
T PF00224_consen 243 IMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGK 322 (348)
T ss_dssp EEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSS
T ss_pred EEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCC
Confidence 88853332 2345554 455544444445542 23557778888999999999999943
Q ss_pred CH-HHHHHHHHhh
Q 024251 192 DV-KAVLALKEYF 203 (270)
Q Consensus 192 d~-~~v~~l~~~~ 203 (270)
-| ..|+-+.+++
T Consensus 323 ~p~~~v~~~~~i~ 335 (348)
T PF00224_consen 323 YPVEAVKTMARII 335 (348)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 34 4455555555
No 16
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=89.73 E-value=1.2 Score=41.60 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=84.0
Q ss_pred chhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCC--------------ccccCCCCeEEEEEEecChhhh
Q 024251 59 SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEG--------------EVYDSGDRRVGSIIEVSTPQEL 123 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g--------------~~~~~~gk~v~~~v~V~~~ed~ 123 (270)
+...++.+|+.|+++||+|- +++|.++++-+-.+..|.-..+- +.+..-+..+.+++.|.+++-+
T Consensus 79 ~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~ 158 (267)
T PRK10128 79 SKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTAL 158 (267)
T ss_pred CHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHH
Confidence 56788999999999999995 56788887777777666322110 1122234567888899998887
Q ss_pred hhhcccc--CCCceEEEeCC----------CCe---ee-chhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEE
Q 024251 124 QQLQPAD--GQAENIVIDLP----------DWQ---VI-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (270)
Q Consensus 124 e~~~~~~--~~~~~vvv~~~----------DWt---iI-PlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVv 187 (270)
+.+..-. ...+.+.+-.. +|. +. =++.++++....+..+-....++++++.+ +++|.+=|+
T Consensus 159 ~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~~~~~a~~~---~~~G~~~v~ 235 (267)
T PRK10128 159 DNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVDPDMAQKC---LAWGANFVA 235 (267)
T ss_pred HhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCCCHHHHHHH---HHcCCcEEE
Confidence 7654432 23556665221 121 11 14566666655554454457888887754 689999888
Q ss_pred EecCC
Q 024251 188 LKVED 192 (270)
Q Consensus 188 l~~~d 192 (270)
+..|-
T Consensus 236 ~g~D~ 240 (267)
T PRK10128 236 VGVDT 240 (267)
T ss_pred EChHH
Confidence 77763
No 17
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=89.56 E-value=0.44 Score=39.55 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcccCeEEEecCCHH-------------HHHHHHHhhccccccccceeeeEE
Q 024251 169 PSEAQIFLEALEQGLGGIVLKVEDVK-------------AVLALKEYFDGRNEVSNLLSLMKA 218 (270)
Q Consensus 169 ~~eA~~~l~~LE~G~DGVvl~~~d~~-------------~v~~l~~~~~~~~~~~~~l~L~~a 218 (270)
-=+....+.+|++|+|||++..--++ -+..+++.+++...+.+++.+...
T Consensus 39 rv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~ 101 (124)
T PF02662_consen 39 RVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWI 101 (124)
T ss_pred ccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEe
Confidence 35678899999999999999433222 266667777776666667766544
No 18
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=89.35 E-value=1.5 Score=38.29 Aligned_cols=42 Identities=26% Similarity=0.204 Sum_probs=34.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
.+|..++.+.+|++ ++++.|+|+|+|+.-+|++++++.+.+.
T Consensus 81 ~~I~VEv~~~ee~~---ea~~~g~d~I~lD~~~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 81 KKIEVEVENLEEAE---EALEAGADIIMLDNMSPEDLKEAVEELR 122 (169)
T ss_dssp SEEEEEESSHHHHH---HHHHTT-SEEEEES-CHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHH---HHHHhCCCEEEecCcCHHHHHHHHHHHh
Confidence 35999999999876 5677999999999999999988887663
No 19
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=88.97 E-value=1.2 Score=40.93 Aligned_cols=131 Identities=11% Similarity=0.190 Sum_probs=80.3
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecC-------------CccccCCCCeEEEEEEecChhhh
Q 024251 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKE-------------GEVYDSGDRRVGSIIEVSTPQEL 123 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~-------------g~~~~~~gk~v~~~v~V~~~ed~ 123 (270)
.+...++.+|+.|+++|+||- +++|.++++-+-.+..|+-..+ .+.+..-+..+.+...|++++-+
T Consensus 72 ~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av 151 (249)
T TIGR03239 72 NEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGV 151 (249)
T ss_pred CCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHH
Confidence 367889999999999999995 5678888777666666532211 01223335566788899998877
Q ss_pred hhhcccc--CCCceEEEeCCC----------Ceeec----hhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEE
Q 024251 124 QQLQPAD--GQAENIVIDLPD----------WQVIP----AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (270)
Q Consensus 124 e~~~~~~--~~~~~vvv~~~D----------WtiIP----lENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVv 187 (270)
+.+..-. .+.+.+.+-..| +.--+ .+.++.+....+...-....++++++.+ +++|.+=++
T Consensus 152 ~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~~~~~~~~~---~~~G~~~~~ 228 (249)
T TIGR03239 152 DNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILAPVEADARRY---LEWGATFVA 228 (249)
T ss_pred HhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcCCCHHHHHHH---HHcCCCEEE
Confidence 7654433 346677763322 12111 2333444443433344445777766655 689998777
Q ss_pred EecC
Q 024251 188 LKVE 191 (270)
Q Consensus 188 l~~~ 191 (270)
+..|
T Consensus 229 ~~~D 232 (249)
T TIGR03239 229 VGSD 232 (249)
T ss_pred EhHH
Confidence 7665
No 20
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.19 E-value=2.1 Score=37.64 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=57.5
Q ss_pred hhHHHHHHHhCCcEEEEcC---------cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhcccc
Q 024251 60 KQVMTAAVERGWNTFVFLS---------ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~---------~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~ 130 (270)
.+.+..|.+.|++.+++.. ...+..+...+. | .+-..+.+.++++...+..
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~-----------------g-~~~iiv~v~t~~ea~~a~~-- 141 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEE-----------------Y-NCLLMADISTLEEALNAAK-- 141 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHH-----------------h-CCeEEEECCCHHHHHHHHH--
Confidence 4478999999999777631 112233322222 2 1123446677777544443
Q ss_pred CCCceEEEeCCCCe------eechhhhhhcccC-CCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 131 GQAENIVIDLPDWQ------VIPAENIVASFQG-SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 131 ~~~~~vvv~~~DWt------iIPlENlIA~~q~-~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+++.+...+.+ ..|--+.+.++.. .+..+++ .++++++++.+ ++.|+|||++-+.
T Consensus 142 ~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~---l~~GadgV~vGsa 208 (219)
T cd04729 142 LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKA---LELGADAVVVGSA 208 (219)
T ss_pred cCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHH---HHCCCCEEEEchH
Confidence 34778766432221 1121133333322 1334444 35566666655 4579999998754
No 21
>PTZ00066 pyruvate kinase; Provisional
Probab=87.76 E-value=2.2 Score=43.64 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=89.8
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 58 ~~Ke~v-T~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
.||+.+ .-|++-|+|.+-... .+++.++++.++ +++.|+.+..+.+|.+++.++.+..-+...|-
T Consensus 210 kD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~-------------l~~~g~~~~IiAKIE~~~av~NldeIl~~sDG 276 (513)
T PTZ00066 210 KDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQL-------------LGERGRHIKIIPKIENIEGLINFDEILAESDG 276 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCceEEEEECCHHHHHHHHHHHHhcCE
Confidence 467776 899999999544332 224445544444 23345667789999999999988887778899
Q ss_pred EEEeCCCCee-echhhh-------hhcccCCCceEEE-----------EcCCHHHHHHHHHHHhcccCeEEEecCC----
Q 024251 136 IVIDLPDWQV-IPAENI-------VASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (270)
Q Consensus 136 vvv~~~DWti-IPlENl-------IA~~q~~~~~i~a-----------~v~~~~eA~~~l~~LE~G~DGVvl~~~d---- 192 (270)
++|.-.|=-+ ||+|.+ |......+.-+|. ...+-.|+--...+..-|+|||+|.-+.
T Consensus 277 IMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~ 356 (513)
T PTZ00066 277 IMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGK 356 (513)
T ss_pred EEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCc
Confidence 9996556544 788774 3332222333333 1234577778889999999999997764
Q ss_pred -H-HHHHHHHHhhcc
Q 024251 193 -V-KAVLALKEYFDG 205 (270)
Q Consensus 193 -~-~~v~~l~~~~~~ 205 (270)
| ..|+-+.+++.+
T Consensus 357 yPveaV~~m~~I~~~ 371 (513)
T PTZ00066 357 FPVEAVNIMAKICFE 371 (513)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3 446666666643
No 22
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=87.01 E-value=5.8 Score=38.18 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=76.3
Q ss_pred eeccCCCCCCCCcEEEEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec
Q 024251 39 MCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS 118 (270)
Q Consensus 39 ~~~~~~~~~~~~K~vWiw~~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~ 118 (270)
|..|+.-..-....-|.|--...-+.+-.++++|-+|+++.+. ..+.+.. ++ ..=..++..|+++-.|+.|.
T Consensus 33 ~~~~~~~~~~~~~~~W~~ql~~~~~~~i~~~~~d~vVID~~~~--g~~~~~f---s~---~~i~~Lk~~g~~viaYlSvG 104 (315)
T TIGR01370 33 MTPPSKKPALSAVQHWGYQLQNADLNEIHTSPFELVVIDYSKD--GTEDGTY---SP---EEIVRAAAAGRWPIAYLSIG 104 (315)
T ss_pred cCCccccccccccceEEEEeCCCChhhhhccCCCEEEEccccc--cCcccCC---CH---HHHHHHHhCCcEEEEEEEch
Confidence 4333333334445578876443334444588999999987531 0011100 00 00012345678888888888
Q ss_pred ChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHH----HHHHhcccCeEEEecCCH
Q 024251 119 TPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIF----LEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 119 ~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~----l~~LE~G~DGVvl~~~d~ 193 (270)
.-|+-..-. ..+|+.+|-+-|+..-.+=.+.-+.-+.+++=-..+ -..+++|.|||.|++=|.
T Consensus 105 e~E~~R~y~------------~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lDs 171 (315)
T TIGR01370 105 AAEDYRFYW------------QKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLIDA 171 (315)
T ss_pred hccccchhh------------hhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHcCCCeEeeccchh
Confidence 766611111 226777888888776555445566666665433333 345679999999987554
No 23
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=86.37 E-value=9.7 Score=33.24 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=66.2
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc---ch----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhh
Q 024251 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE---NQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (270)
Q Consensus 52 ~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~---~~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed 122 (270)
.+|+.- .+-+.+..+++.|+|.+++... +. +.+++.++-.++-.+-+++|......+.. ..-.++.+
T Consensus 75 pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~----~~~~~~~~ 150 (234)
T cd04732 75 PVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLE----TSEVSLEE 150 (234)
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCee----ecCCCHHH
Confidence 356644 5788899999999999998763 22 33334444233333444555443322110 00112222
Q ss_pred hhhhccccCCCceEEEeCCC----Ceeechhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 123 LQQLQPADGQAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~D----WtiIPlENlIA~~-q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+-+.... ..++.+++...+ -+-+++| ++.++ +..+..+++ .+.+.++++.++. .|+|||++..-
T Consensus 151 ~~~~~~~-~ga~~iii~~~~~~g~~~g~~~~-~i~~i~~~~~ipvi~~GGi~~~~di~~~~~---~Ga~gv~vg~~ 221 (234)
T cd04732 151 LAKRFEE-LGVKAIIYTDISRDGTLSGPNFE-LYKELAAATGIPVIASGGVSSLDDIKALKE---LGVAGVIVGKA 221 (234)
T ss_pred HHHHHHH-cCCCEEEEEeecCCCccCCCCHH-HHHHHHHhcCCCEEEecCCCCHHHHHHHHH---CCCCEEEEeHH
Confidence 2221111 235666664321 1112222 22222 122344444 4788888887665 49999998653
No 24
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.20 E-value=1.6 Score=41.03 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=40.5
Q ss_pred hhhhhcccCC---CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 149 ENIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 149 ENlIA~~q~~---~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
++.|.++... ..+|.+++.|.+||+.+ +|.|+|.|+|+.-++++++++.+.+
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A---~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNA---MNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4444444332 25799999999998765 5799999999999999998887765
No 25
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.57 E-value=4.9 Score=35.30 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=58.1
Q ss_pred chhHHHHHHHhCCcEEEEcCc--------c-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 59 SKQVMTAAVERGWNTFVFLSE--------N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~--------~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
..+.+..|.|.|+|.++..-. . .+..+...+. .|.. ....+.+.++...+..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~----------------~~i~--vi~~v~t~ee~~~a~~- 137 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY----------------PGQL--LMADCSTLEEGLAAQK- 137 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC----------------CCCe--EEEeCCCHHHHHHHHH-
Confidence 456689999999996554321 1 1222222210 1222 3345677777654333
Q ss_pred cCCCceEEEeCCCCe------eechhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 130 DGQAENIVIDLPDWQ------VIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 130 ~~~~~~vvv~~~DWt------iIPlENlIA~~q~~-~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+++.+...+.+ .-+.-.++.++... +..+++ .++++++++. +++.|+|||++-+.
T Consensus 138 -~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~---~l~~GadgV~iGsa 204 (221)
T PRK01130 138 -LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKK---ALELGAHAVVVGGA 204 (221)
T ss_pred -cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHH---HHHCCCCEEEEchH
Confidence 34777776432221 11222344443322 334444 3566777665 55689999998754
No 26
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.24 E-value=19 Score=31.63 Aligned_cols=115 Identities=18% Similarity=0.139 Sum_probs=66.8
Q ss_pred chhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec-ChhhhhhhccccCCCceE
Q 024251 59 SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENI 136 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~-~~ed~e~~~~~~~~~~~v 136 (270)
-+++..++.+.|+.++.+.. +..+.+++...+-++.... +|.. +..+ .+. ..++.+++.. ..++.+
T Consensus 25 ~~~~a~a~~~~G~~~~~~~~~~~i~~i~~~~~~Pil~~~~-~d~~-----~~~~----~~~~~~~~v~~a~~--aGad~I 92 (221)
T PRK01130 25 MAAMALAAVQGGAVGIRANGVEDIKAIRAVVDVPIIGIIK-RDYP-----DSEV----YITPTLKEVDALAA--AGADII 92 (221)
T ss_pred HHHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEe-cCCC-----CCCc----eECCCHHHHHHHHH--cCCCEE
Confidence 37888888999999988754 2233333333332221111 1100 1111 112 2334444433 346778
Q ss_pred EEeCCC---CeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 137 VIDLPD---WQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 137 vv~~~D---WtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
+++... ..-..++.++..+.. .+..+++.+.+.+|++ ...+.|+|-+.+
T Consensus 93 ~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~---~a~~~G~d~i~~ 145 (221)
T PRK01130 93 ALDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGL---AAQKLGFDFIGT 145 (221)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHH---HHHHcCCCEEEc
Confidence 875432 111456788888877 6778999999999985 567889998876
No 27
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=84.94 E-value=4.4 Score=37.31 Aligned_cols=116 Identities=11% Similarity=0.143 Sum_probs=64.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEe-cChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V-~~~ed~e~~~~~~~~~~~vvv 138 (270)
.+.+..+.|.|++++++++.-.+...++-+. +++.|...+..+.- ++.+.+..++......-|++-
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~-------------~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEA-------------AKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHH-------------HHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence 6789999999999999997533333222211 12334333333333 334555555554322333322
Q ss_pred e--CCCC--ee-echhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 139 D--LPDW--QV-IPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 139 ~--~~DW--ti-IPlENlIA~~q~~-~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
. +++= +. -++...|..+.+. +..|++ .++++++++. +.+.|+|||++-+.
T Consensus 172 ~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~---~~~~GADgvVvGSa 229 (256)
T TIGR00262 172 RAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQ---AIDAGADGVIVGSA 229 (256)
T ss_pred CCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH---HHHcCCCEEEECHH
Confidence 1 1121 12 2456777766543 233443 3677888775 67899999998763
No 28
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=84.62 E-value=4.7 Score=29.81 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=51.8
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
.+.++++.-.... ....+.++++..-.. .-...++..++. .+..++....+.+ .......++.|++|.+.+|-++
T Consensus 28 ~~~~~~~~~~~~~-~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~~~-~~~~~~~~~~g~~~~l~kp~~~ 104 (112)
T PF00072_consen 28 TASSGEEALELLK-KHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDEDD-SDEVQEALRAGADDYLSKPFSP 104 (112)
T ss_dssp EESSHHHHHHHHH-HSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESSTS-HHHHHHHHHTTESEEEESSSSH
T ss_pred EECCHHHHHHHhc-ccCceEEEEEeeecc-ccccccccccccccccccEEEecCCCC-HHHHHHHHHCCCCEEEECCCCH
Confidence 4466665444332 245788999865444 333344444333 4567777774444 6667778899999999999999
Q ss_pred HHHHH
Q 024251 194 KAVLA 198 (270)
Q Consensus 194 ~~v~~ 198 (270)
.++.+
T Consensus 105 ~~l~~ 109 (112)
T PF00072_consen 105 EELRA 109 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97654
No 29
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=84.11 E-value=3.8 Score=35.77 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=69.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~ 132 (270)
--++.....+.|++++-+..++ .+..+.+.+... -|+...+ -+.++++.+.+.. ..
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~-iPi~~~~---------------~i~~~~~v~~~~~--~G 94 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVS-LPVLRKD---------------FIIDPYQIYEARA--AG 94 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcC-CCEEECC---------------eecCHHHHHHHHH--cC
Confidence 3678888999999987664322 222222222211 1333221 2456666555554 35
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
++.+++...+...==+++++..+..-+...+..+.+.+|++. +++.|+|.+.+.+.|
T Consensus 95 ad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~---~~~~g~~~i~~t~~~ 151 (217)
T cd00331 95 ADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELER---ALALGAKIIGINNRD 151 (217)
T ss_pred CCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHH---HHHcCCCEEEEeCCC
Confidence 788888777765322355555444456677888899999655 566899999888665
No 30
>PLN02591 tryptophan synthase
Probab=83.79 E-value=5.3 Score=37.05 Aligned_cols=116 Identities=11% Similarity=0.110 Sum_probs=61.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec-ChhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~-~~ed~e~~~~~~~~~~~vv 137 (270)
-.+.+..|-|+|+|++|+++=-.|...++... .++.|-....++.-+ +.+.+..++......=|+|
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~-------------~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPLEETEALRAE-------------AAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLV 161 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH-------------HHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEe
Confidence 46789999999999999986222222222211 111222222232223 3344455555432222322
Q ss_pred Ee--CCCCe-eec--hhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 138 ID--LPDWQ-VIP--AENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 138 v~--~~DWt-iIP--lENlIA~~q~~-~~~i~--a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
=. .++.+ -+| +++.++.+.+. +..|+ ..++++++++. +++.|+|||++-+
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~---~~~~GADGvIVGS 219 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQ---IAGWGADGVIVGS 219 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHH---HHhcCCCEEEECH
Confidence 10 11221 223 45666665542 22333 35678888875 7889999999977
No 31
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=83.46 E-value=4.6 Score=37.17 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=80.4
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcCc------chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhh
Q 024251 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (270)
Q Consensus 53 vWiw~--~~Ke~vT~ALEsG~d~~vv~~~------~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e 124 (270)
.||-. +-.++.....+.|++++-+..| +.+..+...+...+ |+..+| -|.++-+++
T Consensus 64 g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~i-Pvl~kd---------------fi~~~~qi~ 127 (260)
T PRK00278 64 GVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSL-PVLRKD---------------FIIDPYQIY 127 (260)
T ss_pred CccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCC-CEEeee---------------ecCCHHHHH
Confidence 46543 3478888889999999776322 23333333332111 322211 356666655
Q ss_pred hhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 125 QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
++.. .++|.+.+...+-..--++.++...+.-+..+++++.|.+|++. +++.|+|=|-+.++|.
T Consensus 128 ~a~~--~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~---A~~~gadiIgin~rdl 191 (260)
T PRK00278 128 EARA--AGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELER---ALKLGAPLIGINNRNL 191 (260)
T ss_pred HHHH--cCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH---HHHcCCCEEEECCCCc
Confidence 5554 46788888887755445889999888888899999999999976 4477999888887543
No 32
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=83.02 E-value=3.5 Score=38.92 Aligned_cols=112 Identities=11% Similarity=0.125 Sum_probs=68.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCc-c-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhcccc-CCCc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE-N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD-GQAE 134 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~-~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~-~~~~ 134 (270)
.+.+++.+.-+.|.=+++-... + .++.+++..+... .++++|+-+-...+...+.+.... .+.+
T Consensus 23 s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~-------------t~~pfgvn~~~~~~~~~~~~~~~~~~~v~ 89 (307)
T TIGR03151 23 ATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKEL-------------TDKPFGVNIMLLSPFVDELVDLVIEEKVP 89 (307)
T ss_pred CCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHh-------------cCCCcEEeeecCCCCHHHHHHHHHhCCCC
Confidence 4588999999999888874321 1 1222333333111 134555554443444333323222 3455
Q ss_pred eEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 135 NIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 135 ~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
.|.+.+. .|-+ ++.+++..+.++++.+.+.++|+.+. +.|+|+|++..
T Consensus 90 ~v~~~~g----~p~~-~i~~lk~~g~~v~~~v~s~~~a~~a~---~~GaD~Ivv~g 137 (307)
T TIGR03151 90 VVTTGAG----NPGK-YIPRLKENGVKVIPVVASVALAKRME---KAGADAVIAEG 137 (307)
T ss_pred EEEEcCC----CcHH-HHHHHHHcCCEEEEEcCCHHHHHHHH---HcCCCEEEEEC
Confidence 5555433 3544 88999888899999999999986554 67999999855
No 33
>PLN02762 pyruvate kinase complex alpha subunit
Probab=82.96 E-value=5 Score=41.11 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=89.6
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCC--CeEEEEEEecChhhhhhhccccCCC
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD--RRVGSIIEVSTPQELQQLQPADGQA 133 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~g--k~v~~~v~V~~~ed~e~~~~~~~~~ 133 (270)
++||+.+.-|++-|+|.+-+.- .+++.++++.++ +.+.| ..+..+.+|.+++-++.+..-....
T Consensus 203 ekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~-------------l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~s 269 (509)
T PLN02762 203 SKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSY-------------IAARSRDSDIGVIAKIESLDSLKNLEEIIRAS 269 (509)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCceEEEEeCCHHHHHHHHHHHHhc
Confidence 3578889999999999655442 224444444444 22222 2567888999999999888877788
Q ss_pred ceEEEeCCCCe-eechhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecCC--
Q 024251 134 ENIVIDLPDWQ-VIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED-- 192 (270)
Q Consensus 134 ~~vvv~~~DWt-iIPlENlIA-------~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~d-- 192 (270)
|-++|--.|=- =||+|++-. .....+.-+|.. ..+-.|+--...+.--|+|+|+|.-+.
T Consensus 270 DgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~ 349 (509)
T PLN02762 270 DGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAM 349 (509)
T ss_pred CEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcC
Confidence 99988655554 488887643 222222334431 234478888888999999999999664
Q ss_pred ---H-HHHHHHHHhhc
Q 024251 193 ---V-KAVLALKEYFD 204 (270)
Q Consensus 193 ---~-~~v~~l~~~~~ 204 (270)
| +.|+-+.++..
T Consensus 350 G~yPveaV~~m~~I~~ 365 (509)
T PLN02762 350 GLYPEKALSVLRSVSL 365 (509)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 2 45666666654
No 34
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=82.74 E-value=1.4 Score=41.58 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=37.9
Q ss_pred ceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 134 ~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+.++..+. .|.+.++..++..+.+++..|.++++|+. +++.|+|+|++.--
T Consensus 115 ~~v~~~~G----~p~~~~i~~l~~~gi~v~~~v~s~~~A~~---a~~~G~D~iv~qG~ 165 (330)
T PF03060_consen 115 DVVSFGFG----LPPPEVIERLHAAGIKVIPQVTSVREARK---AAKAGADAIVAQGP 165 (330)
T ss_dssp SEEEEESS----SC-HHHHHHHHHTT-EEEEEESSHHHHHH---HHHTT-SEEEEE-T
T ss_pred EEEEeecc----cchHHHHHHHHHcCCccccccCCHHHHHH---hhhcCCCEEEEecc
Confidence 34555443 47788899999999999999999999986 57789999999853
No 35
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.55 E-value=3 Score=39.86 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=36.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
.+|..+|.|.+||+.++ +.|+|.|+|+-=+|+++++..+.+.
T Consensus 198 ~kIeVEv~tleea~~a~---~agaDiImLDnmspe~l~~av~~~~ 239 (290)
T PRK06559 198 KMVEVEVESLAAAEEAA---AAGADIIMLDNMSLEQIEQAITLIA 239 (290)
T ss_pred CeEEEECCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhc
Confidence 68999999999987654 7899999999999999988877653
No 36
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.52 E-value=2.7 Score=39.90 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=36.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+++++++..+.+.
T Consensus 195 ~kIeVEv~tleea~ea---~~~gaDiI~LDn~s~e~l~~av~~~~ 236 (281)
T PRK06106 195 VKIEVEVDTLDQLEEA---LELGVDAVLLDNMTPDTLREAVAIVA 236 (281)
T ss_pred CcEEEEeCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHhC
Confidence 5799999999998765 58999999999999999988877663
No 37
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=82.08 E-value=3.5 Score=41.36 Aligned_cols=135 Identities=19% Similarity=0.287 Sum_probs=81.0
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCC-CeEEEEEEecChhhhhhhccccCCCce
Q 024251 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~g-k~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
+|++-+..+++.|+|.+.++. ++++.++.+.+. +...+ ..+..+..|.+++-++.+..-....+-
T Consensus 172 kD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~-------------l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dg 238 (473)
T TIGR01064 172 KDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREV-------------LGEKGAKDVKIIAKIENQEGVDNIDEIAEASDG 238 (473)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCceEEEEECCHHHHHhHHHHHhhCCc
Confidence 578889999999999999986 334444433332 11112 245678889999888876655544566
Q ss_pred EEEeCCCCee-ech-------hhhhhcccCCCceEEEEc-------C----CHHHHHHHHHHHhcccCeEEEecCC----
Q 024251 136 IVIDLPDWQV-IPA-------ENIVASFQGSGKTVFAIS-------K----TPSEAQIFLEALEQGLGGIVLKVED---- 192 (270)
Q Consensus 136 vvv~~~DWti-IPl-------ENlIA~~q~~~~~i~a~v-------~----~~~eA~~~l~~LE~G~DGVvl~~~d---- 192 (270)
+++-..|-.. +|. ..++.++...+..++... . +-.|+.-+..+.+.|+|+|+|..+.
T Consensus 239 i~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~ 318 (473)
T TIGR01064 239 IMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGK 318 (473)
T ss_pred EEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCC
Confidence 6663333211 122 233333333333333322 2 2247777888899999999997663
Q ss_pred --HHHHHHHHHhhcc
Q 024251 193 --VKAVLALKEYFDG 205 (270)
Q Consensus 193 --~~~v~~l~~~~~~ 205 (270)
.+.|+-+.+++.+
T Consensus 319 yP~~~v~~m~~I~~~ 333 (473)
T TIGR01064 319 YPVEAVKMMAKIAKE 333 (473)
T ss_pred CHHHHHHHHHHHHHH
Confidence 2457777776644
No 38
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.74 E-value=3 Score=39.42 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=44.4
Q ss_pred chhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 147 PAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 147 PlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
.+++-|+++... ..+|..+|.+.+||+.+ ++.|+|.|+|+.-+|+++++..+.+.
T Consensus 168 ~i~~av~~~r~~~~~~kIeVEv~~leea~~a---~~agaDiI~LDn~~~e~l~~~v~~l~ 224 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEVEVESLEDALKA---AKAGADIIMLDNMTPEEIREVIEALK 224 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHH
Confidence 466666665543 26799999999998765 57999999999999999998888764
No 39
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=81.21 E-value=19 Score=33.02 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=69.7
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhcccc-
Q 024251 52 RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD- 130 (270)
Q Consensus 52 ~vWiw~~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~- 130 (270)
-.|++..+-.++..+..+|+|.++++-||.- .+.+++..+....
T Consensus 15 g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~-----------------------------------~~~~~~~~~~~a~~ 59 (249)
T TIGR02311 15 GLWLGLADPYAAEICAGAGFDWLLIDGEHAP-----------------------------------NDVRTILSQLQALA 59 (249)
T ss_pred EEEEeCCCcHHHHHHHhcCCCEEEEeccCCC-----------------------------------CCHHHHHHHHHHHH
Confidence 3899888999999999999999999887631 0112222211111
Q ss_pred CCCceEEEeC--CCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCe-----------------------
Q 024251 131 GQAENIVIDL--PDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGG----------------------- 185 (270)
Q Consensus 131 ~~~~~vvv~~--~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DG----------------------- 185 (270)
.....+++.- .|.. .+..++-. +..+=++-.++|++||+.+...+..-..|
T Consensus 60 ~~g~~~~VRv~~~~~~--~i~~~Ld~--Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~ 135 (249)
T TIGR02311 60 PYPSSPVVRPAIGDPV--LIKQLLDI--GAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQ 135 (249)
T ss_pred hcCCCcEEECCCCCHH--HHHHHhCC--CCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHH
Confidence 0011222221 1211 23444443 45677888999999999999998842222
Q ss_pred ------EEEecCCHHHHHHHHHhhc
Q 024251 186 ------IVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 186 ------Vvl~~~d~~~v~~l~~~~~ 204 (270)
|+..-+++..+..+.++++
T Consensus 136 ~n~~~~vi~~IEt~~av~n~~eI~a 160 (249)
T TIGR02311 136 ADEEICVLLQVETREALDNLEEIAA 160 (249)
T ss_pred hhhceEEEEEecCHHHHHHHHHHHC
Confidence 5556677777777777663
No 40
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=81.18 E-value=5.1 Score=38.04 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=37.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
..+|..++.+.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 189 ~~kIeVEv~tleqa~ea---~~agaDiI~LDn~~~e~l~~av~~~~ 231 (284)
T PRK06096 189 EKKIVVEADTPKEAIAA---LRAQPDVLQLDKFSPQQATEIAQIAP 231 (284)
T ss_pred CCCEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 35799999999998865 68999999999999999999888763
No 41
>PLN02623 pyruvate kinase
Probab=81.12 E-value=5.4 Score=41.56 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=88.3
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
.|++.+.-|+|-|+|.+-+.- .+++.++++.+. +...|..+..+.+|.+++-++.+-.-+...|-+
T Consensus 279 kD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~-------------l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgI 345 (581)
T PLN02623 279 KDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDY-------------LKSCNADIHVIVKIESADSIPNLHSIITASDGA 345 (581)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCcceEEEEECCHHHHHhHHHHHHhCCEE
Confidence 578899999999999654432 224445544443 223355677889999999988877766678888
Q ss_pred EEeCCC-Ceeechhhhh-------hcccCCCceEEE-----------EcCCHHHHHHHHHHHhcccCeEEEecCC-----
Q 024251 137 VIDLPD-WQVIPAENIV-------ASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (270)
Q Consensus 137 vv~~~D-WtiIPlENlI-------A~~q~~~~~i~a-----------~v~~~~eA~~~l~~LE~G~DGVvl~~~d----- 192 (270)
+|--.| --=||+|.+. +.....+.-++. ...+-.|+.-+..+++.|+|+|+|..+.
T Consensus 346 mIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~y 425 (581)
T PLN02623 346 MVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 425 (581)
T ss_pred EECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcC
Confidence 884444 3446666543 333333333442 1223368888899999999999999763
Q ss_pred H-HHHHHHHHhhcc
Q 024251 193 V-KAVLALKEYFDG 205 (270)
Q Consensus 193 ~-~~v~~l~~~~~~ 205 (270)
| ..|+-+.++..+
T Consensus 426 PveaV~~m~~I~~~ 439 (581)
T PLN02623 426 PLKAVKVMHTVALR 439 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 2 456666666543
No 42
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.42 E-value=5.5 Score=37.92 Aligned_cols=55 Identities=9% Similarity=-0.013 Sum_probs=41.6
Q ss_pred chhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 147 PAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 147 PlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
.+++-+.++... ..+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVEv~tl~ea~ea---l~~gaDiI~LDnm~~e~vk~av~~~~ 241 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVEVDSLEQLDEV---LAEGAELVLLDNFPVWQTQEAVQRRD 241 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEEcCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 344444444322 25799999999988765 78999999999999999988777653
No 43
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=80.02 E-value=12 Score=32.63 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=59.1
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
...+.+..+.+.|+|.+.++... .+..+++.+ .+..+ ...+.+.++.+.+.. ...+++
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~-----------------~~i~~--i~~v~~~~~~~~~~~--~gad~i 126 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPPAEVVERLKA-----------------AGIKV--IPTVTSVEEARKAEA--AGADAL 126 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH-----------------cCCEE--EEeCCCHHHHHHHHH--cCCCEE
Confidence 56789999999999999987532 222222221 12222 234456666555443 347888
Q ss_pred EEeCCC------CeeechhhhhhcccC-CCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 137 VIDLPD------WQVIPAENIVASFQG-SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 137 vv~~~D------WtiIPlENlIA~~q~-~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+++... ....+...++.++.+ .+..+++ .++++++++.++ +.|+|||++.+.
T Consensus 127 ~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l---~~GadgV~vgS~ 187 (236)
T cd04730 127 VAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAAL---ALGADGVQMGTR 187 (236)
T ss_pred EEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH---HcCCcEEEEchh
Confidence 875421 110122233333221 1233433 355556655544 589999999754
No 44
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.90 E-value=6.3 Score=37.41 Aligned_cols=43 Identities=21% Similarity=0.096 Sum_probs=36.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
..+|-.++.|.+||+.+ ++.|+|.|+|.+-+++++++..+.+.
T Consensus 196 ~~~I~VEv~tleea~eA---~~~GaD~I~LDn~~~e~l~~av~~~~ 238 (288)
T PRK07428 196 PLTIEVETETLEQVQEA---LEYGADIIMLDNMPVDLMQQAVQLIR 238 (288)
T ss_pred CCEEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 35799999999999865 48999999999999999988777653
No 45
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.82 E-value=3.8 Score=38.87 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=41.8
Q ss_pred hhhhhhcccCC---CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 148 AENIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 148 lENlIA~~q~~---~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
+.+-|.++... ..+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+++.
T Consensus 179 i~~av~~~r~~~~~~~kIeVEv~slee~~ea---~~~gaDiImLDn~s~e~l~~av~~~~ 235 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEVDRLDQIEPV---LAAGVDTIMLDNFSLDDLREGVELVD 235 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeCCHHHHHHH---HhcCCCEEEECCCCHHHHHHHHHHhC
Confidence 44444443322 25799999999999876 47899999999999999998887764
No 46
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=79.72 E-value=8.5 Score=35.88 Aligned_cols=115 Identities=9% Similarity=0.070 Sum_probs=63.7
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC-hhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~-~ed~e~~~~~~~~~~~vv 137 (270)
-.+.+..|-++|+|++++++.-.|...++.+. .++.|.....++.-++ .+.++.++.... +++-
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~-------------~~~~gi~~I~lv~PtT~~eri~~i~~~a~--gFIY 172 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEESDYLISV-------------CNLYNIELILLIAPTSSKSRIQKIARAAP--GCIY 172 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH-------------HHHcCCCEEEEECCCCCHHHHHHHHHhCC--CcEE
Confidence 46789999999999999997433333322222 1223433344444444 455555554432 2333
Q ss_pred E-eCCCC----eeec--hhhhhhcccCC-Cc--eEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 138 I-DLPDW----QVIP--AENIVASFQGS-GK--TVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 138 v-~~~DW----tiIP--lENlIA~~q~~-~~--~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+ .-.+- +-+| ++++++.+... +. -+=-.++++++|+. +.+.|+|||++-+.
T Consensus 173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~---~~~~GADGvVVGSa 233 (263)
T CHL00200 173 LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQ---IKGWNINGIVIGSA 233 (263)
T ss_pred EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH---HHhcCCCEEEECHH
Confidence 3 11111 1222 55666655432 11 23335778888876 67899999998764
No 47
>PLN02461 Probable pyruvate kinase
Probab=79.70 E-value=5.7 Score=40.71 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=89.9
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 58 ~~Ke~v-T~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
.||+.+ .-|++-|+|.+-..- .+++.++++.++ +...|+.+..+.+|.+++.++.+..-+...|-
T Consensus 194 kD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~-------------l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDg 260 (511)
T PLN02461 194 KDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKV-------------LGEHAKSILLISKVENQEGLDNFDDILAESDA 260 (511)
T ss_pred HHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCCCEEEEECCHHHHHHHHHHHHhcCE
Confidence 477777 789999999655442 124444444444 22335566788999999999998887778888
Q ss_pred EEEeCCCCe-eechhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecCC----
Q 024251 136 IVIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (270)
Q Consensus 136 vvv~~~DWt-iIPlENl-------IA~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~d---- 192 (270)
++|.-.|=- =||+|.+ |......+.-+|.. ..+-.|+--...+..-|+|||+|.-+.
T Consensus 261 IMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~ 340 (511)
T PLN02461 261 FMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGA 340 (511)
T ss_pred EEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCC
Confidence 888555543 4777765 33333333334431 334578888889999999999999553
Q ss_pred -H-HHHHHHHHhhcc
Q 024251 193 -V-KAVLALKEYFDG 205 (270)
Q Consensus 193 -~-~~v~~l~~~~~~ 205 (270)
| +.|+.+.+++.+
T Consensus 341 yPveaV~~m~~I~~~ 355 (511)
T PLN02461 341 YPELAVKTMARICRE 355 (511)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3 456666776643
No 48
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=79.59 E-value=31 Score=30.27 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=64.5
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc---ch----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhh
Q 024251 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE---NQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (270)
Q Consensus 52 ~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~---~~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed 122 (270)
.+|+-- .+.+.+..+++.|++.+++... +. +.+++++.-.++-.+-+++|+..- +|.+-. .-.++.+
T Consensus 74 pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~-~g~~~~---~~~~~~~ 149 (230)
T TIGR00007 74 PVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAV-KGWLEK---SEVSLEE 149 (230)
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEE-cCCccc---CCCCHHH
Confidence 355533 5889999999999999998742 22 334444322223334445553221 111100 0023333
Q ss_pred hhhhccccCCCceEEEeCCC----Ceeechhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 123 LQQLQPADGQAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~D----WtiIPlENlIA~~-q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+.+.... ...+.+++...+ -.-+-++ ++.++ +..+..+++ .+.+.++++.++ +.|+|||++.+-
T Consensus 150 ~~~~~~~-~g~~~ii~~~~~~~g~~~g~~~~-~i~~i~~~~~ipvia~GGi~~~~di~~~~---~~Gadgv~ig~a 220 (230)
T TIGR00007 150 LAKRLEE-LGLEGIIYTDISRDGTLSGPNFE-LTKELVKAVNVPVIASGGVSSIDDLIALK---KLGVYGVIVGKA 220 (230)
T ss_pred HHHHHHh-CCCCEEEEEeecCCCCcCCCCHH-HHHHHHHhCCCCEEEeCCCCCHHHHHHHH---HCCCCEEEEeHH
Confidence 2222222 234555543221 0112222 22222 222334444 378999998765 489999998653
No 49
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=79.18 E-value=6.5 Score=37.18 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=42.5
Q ss_pred hhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 148 AENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 148 lENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
+++.+.++... ..+|..++.+.+||+.+ ++.|+|.|+|+-=+|+++++..+.+.
T Consensus 175 i~~av~~~r~~~~~~kIeVEv~tleea~ea---~~~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEADTIEQALTV---LQASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHh
Confidence 44555544432 46799999999998864 68999999999999999998887763
No 50
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=78.82 E-value=8.2 Score=37.31 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=75.8
Q ss_pred eCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC---C
Q 024251 57 TESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ---A 133 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~---~ 133 (270)
.-+.++...|-|-|.-+++.. -+.|...... ..+ ++++..++.-+-+ ++++.+++..+... .
T Consensus 48 ~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~--r~~-----------~~~~l~v~~~vg~-~~~~~~~~~~Lv~ag~~~ 112 (326)
T PRK05458 48 IIDEKIAEWLAENGYFYIMHR-FDPEARIPFI--KDM-----------HEQGLIASISVGV-KDDEYDFVDQLAAEGLTP 112 (326)
T ss_pred hhHHHHHHHHHHcCCEEEEec-CCHHHHHHHH--Hhc-----------cccccEEEEEecC-CHHHHHHHHHHHhcCCCC
Confidence 457899999999999999977 1232221111 111 1223333333222 45666666665543 4
Q ss_pred ceEEEeCCCCeeechhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 134 ENIVIDLPDWQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 134 ~~vvv~~~DWtiIPlENlIA~~q~~~--~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
|.+.|+..+--...+.++|+.+...- .-|++ .+.|.++|+.+. +.|+|+|.+.
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~---~aGad~i~vg 168 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELE---NAGADATKVG 168 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHH---HcCcCEEEEC
Confidence 99999999988889999999887653 34666 588888887655 6899998855
No 51
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.71 E-value=4.5 Score=38.72 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=36.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+
T Consensus 206 ~kIeVEvetleea~eA---~~aGaDiImLDnmspe~l~~av~~~ 246 (294)
T PRK06978 206 VPVQIEVETLAQLETA---LAHGAQSVLLDNFTLDMMREAVRVT 246 (294)
T ss_pred CcEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhh
Confidence 5799999999998765 6899999999999999998877765
No 52
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=77.94 E-value=43 Score=28.53 Aligned_cols=120 Identities=20% Similarity=0.145 Sum_probs=59.1
Q ss_pred hHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEeC
Q 024251 61 QVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDL 140 (270)
Q Consensus 61 e~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~ 140 (270)
+-+..|++.|++++.++.++... ..... ..+.++.+|+. +.+.++..++. ....|++.+..
T Consensus 72 ~~~~~a~~~gad~vh~~~~~~~~-~~~~~--------------~~~~~~~~g~~--~~t~~e~~~a~--~~gaD~v~~~~ 132 (212)
T PRK00043 72 DRVDLALAVGADGVHLGQDDLPV-ADARA--------------LLGPDAIIGLS--THTLEEAAAAL--AAGADYVGVGP 132 (212)
T ss_pred ChHHHHHHcCCCEEecCcccCCH-HHHHH--------------HcCCCCEEEEe--CCCHHHHHHHh--HcCCCEEEECC
Confidence 34667888888887775532110 11100 11234555644 34555543333 24688998742
Q ss_pred CCCee-----ec---hhhhhhcccCCC-ceEEEEcC-CHHHHHHHHHHHhcccCeEEE-----ecCCHHH-HHHHHHh
Q 024251 141 PDWQV-----IP---AENIVASFQGSG-KTVFAISK-TPSEAQIFLEALEQGLGGIVL-----KVEDVKA-VLALKEY 202 (270)
Q Consensus 141 ~DWti-----IP---lENlIA~~q~~~-~~i~a~v~-~~~eA~~~l~~LE~G~DGVvl-----~~~d~~~-v~~l~~~ 202 (270)
-..+. .| ++.+-.-.+..+ ..|++.=. ++ +.+-.+++.|+|||++ ..+|+.+ ++++++.
T Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~ 207 (212)
T PRK00043 133 IFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAA 207 (212)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHH
Confidence 22221 11 333322111112 45554421 33 4566888999999997 4456543 3344443
No 53
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=77.88 E-value=4.2 Score=26.64 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=19.5
Q ss_pred EEEEe-CchhHHHHHHHhCCcEEEEcC
Q 024251 53 VWIWT-ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 53 vWiw~-~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
|-+|+ ++.+.++.+|..|+|+|+.+.
T Consensus 2 V~~WT~d~~~~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 2 VYFWTPDKPASWRELLDLGVDGIMTDY 28 (30)
T ss_dssp EEEET--SHHHHHHHHHHT-SEEEES-
T ss_pred eEEecCCCHHHHHHHHHcCCCEeeCCC
Confidence 55677 578899999999999998643
No 54
>PRK06739 pyruvate kinase; Validated
Probab=77.41 E-value=8.5 Score=37.64 Aligned_cols=135 Identities=15% Similarity=0.171 Sum_probs=88.1
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeEEEEEEecChhhhhhhccccCCCc
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
++|++.+.-|++.|+|.+-..- .+++.+.++.++ +.+. +..+..+.+|.+++.++.+..-+...|
T Consensus 165 ekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sD 231 (352)
T PRK06739 165 EKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDF-------------IQQYKETSPNLIAKIETMEAIENFQDICKEAD 231 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 3578889999999999765442 224445544444 1122 234567889999999888887777788
Q ss_pred eEEEeCCCCe-eechhhh-------hhcccCCCceEEE-----------EcCCHHHHHHHHHHHhcccCeEEEecCC---
Q 024251 135 NIVIDLPDWQ-VIPAENI-------VASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (270)
Q Consensus 135 ~vvv~~~DWt-iIPlENl-------IA~~q~~~~~i~a-----------~v~~~~eA~~~l~~LE~G~DGVvl~~~d--- 192 (270)
-++|--.|=- -||+|.+ |......+.-+|. ...+-.|+--.+.+..-|+|||+|.-+.
T Consensus 232 gimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G 311 (352)
T PRK06739 232 GIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASG 311 (352)
T ss_pred EEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCC
Confidence 8888555543 4788765 3333222323332 1344578888899999999999999553
Q ss_pred --H-HHHHHHHHhhc
Q 024251 193 --V-KAVLALKEYFD 204 (270)
Q Consensus 193 --~-~~v~~l~~~~~ 204 (270)
| ..|+-++++..
T Consensus 312 ~yPveaV~~m~~I~~ 326 (352)
T PRK06739 312 EHPIESVSTLRLVSE 326 (352)
T ss_pred CCHHHHHHHHHHHHH
Confidence 3 45666666553
No 55
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=76.70 E-value=14 Score=35.84 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=70.0
Q ss_pred eCchhHHHHHHHhCCcEEEEcCcchh-hhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC---
Q 024251 57 TESKQVMTAAVERGWNTFVFLSENQQ-LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~~~~e-~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~--- 132 (270)
.-+.++...|-|-|.-+++..- +.| ..+...+. ++++..++.- -=.+++|++++......
T Consensus 45 ~in~~LA~~a~~~G~~~i~hK~-~~E~~~sfvrk~--------------k~~~L~v~~S-vG~t~e~~~r~~~lv~a~~~ 108 (321)
T TIGR01306 45 IIDEKLAEQLAENGYFYIMHRF-DEESRIPFIKDM--------------QERGLFASIS-VGVKACEYEFVTQLAEEALT 108 (321)
T ss_pred hhhHHHHHHHHHcCCEEEEecC-CHHHHHHHHHhc--------------cccccEEEEE-cCCCHHHHHHHHHHHhcCCC
Confidence 4578999999999999999872 222 23222111 1122222222 12356777777776654
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCC--ceEEEE-cCCHHHHHHHHHHHhcccCeEEEe
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSG--KTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~--~~i~a~-v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
.++++++...=--..+-+.|..+...- .-|++. +.+++.|+.+. +.|+|||.+.
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~---~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELE---NAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHH---HcCcCEEEEC
Confidence 499999887555556656666554331 224454 77777777665 6899999877
No 56
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=76.62 E-value=7.9 Score=31.97 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=55.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
.+.+..+++.|++.+.++..+.........+..+.. ..+.-|. .+-+.+ +.+.+.. .+.+.+-+.
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~-------~~~~~~~----~l~~~~--~~~~a~~--~g~~~vh~~ 79 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRE-------LCRKYGV----PLIIND--RVDLALA--VGADGVHLG 79 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHH-------HHHHhCC----eEEEeC--hHHHHHH--cCCCEEecC
Confidence 678999999999999887543221111111111111 0011121 122222 2233222 234555554
Q ss_pred CCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 140 ~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
..+.. .+ .+..+.+.+..+-..+.+++|++ .+++.|+|.|++.
T Consensus 80 ~~~~~---~~-~~~~~~~~~~~~g~~~~t~~~~~---~~~~~g~d~i~~~ 122 (196)
T cd00564 80 QDDLP---VA-EARALLGPDLIIGVSTHSLEEAL---RAEELGADYVGFG 122 (196)
T ss_pred cccCC---HH-HHHHHcCCCCEEEeeCCCHHHHH---HHhhcCCCEEEEC
Confidence 43332 22 22333344567778888887765 4567899999885
No 57
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=76.32 E-value=23 Score=31.37 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=46.9
Q ss_pred cCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 130 DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 130 ~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
....|.++++-..+..=.+|-+=.=.+....-=+......++.....++++.|++|.+++..+++++.+.
T Consensus 44 ~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~a 113 (211)
T COG2197 44 ELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEA 113 (211)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 3567899998777665554433221112222234455666778889999999999999999999875443
No 58
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=76.11 E-value=28 Score=31.17 Aligned_cols=122 Identities=19% Similarity=0.180 Sum_probs=73.4
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
-.+++.++++.|+..+=++-.+.+-.+.+..+..--+ ....+| -..|.++++.+.+... .+++++.
T Consensus 24 ~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~-----------~~~~iG-aGTV~~~~~~~~a~~a--GA~fivs 89 (206)
T PRK09140 24 ALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG-----------DRALIG-AGTVLSPEQVDRLADA--GGRLIVT 89 (206)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC-----------CCcEEe-EEecCCHHHHHHHHHc--CCCEEEC
Confidence 3678899999999987776433222222222211000 011222 3367899987776654 5677777
Q ss_pred eCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC---CHHHHHHHHHhh
Q 024251 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (270)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~~~~ 203 (270)
-..|- .++...+..+.-++..+.+++|++. +.+.|+|-|-+-|. .++.+++++..+
T Consensus 90 p~~~~------~v~~~~~~~~~~~~~G~~t~~E~~~---A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 90 PNTDP------EVIRRAVALGMVVMPGVATPTEAFA---ALRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred CCCCH------HHHHHHHHCCCcEEcccCCHHHHHH---HHHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 44442 2333334455567888999999755 55789999988443 356666666554
No 59
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=75.25 E-value=24 Score=32.94 Aligned_cols=85 Identities=9% Similarity=0.087 Sum_probs=54.6
Q ss_pred cChhhhhhhccccCCCceEEEeCCCCe-----eechhhhhhcc---cCCCceEEEEcCCH---HHHHHHHHHHhcccCeE
Q 024251 118 STPQELQQLQPADGQAENIVIDLPDWQ-----VIPAENIVASF---QGSGKTVFAISKTP---SEAQIFLEALEQGLGGI 186 (270)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DWt-----iIPlENlIA~~---q~~~~~i~a~v~~~---~eA~~~l~~LE~G~DGV 186 (270)
+.++-++.+.. ...|.|+++..|=- ----+|++..+ ...+..++..++.. .-..-+..++..|++||
T Consensus 12 ~~~~~~~ka~~--~gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~~~~~~~~VRIn~~~~~~~~~di~~~l~~g~~gi 89 (288)
T TIGR01588 12 NNPAMISDAFI--YGADSVMFDLEDAVSLAEKDSARLLVYEALQTPDYGDTETVVRINGLDTPFGLADIKAVVKAGVDVV 89 (288)
T ss_pred CCHHHHHhhhh--cCCCEEEEecccCCCcchHHHHHHHHHHHHhccCCCCCEEEEEECCCCChhHHHHHHHHHhcCCCEE
Confidence 34444444332 35899999887631 11122344433 32446899999954 33566777889999999
Q ss_pred EEe-cCCHHHHHHHHHhhc
Q 024251 187 VLK-VEDVKAVLALKEYFD 204 (270)
Q Consensus 187 vl~-~~d~~~v~~l~~~~~ 204 (270)
+|+ .++++++..+.+.+.
T Consensus 90 vlPKv~s~~~v~~~~~~l~ 108 (288)
T TIGR01588 90 RLPKTDTAEDIHELEKLIE 108 (288)
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 885 457888888877764
No 60
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=74.77 E-value=10 Score=38.26 Aligned_cols=113 Identities=18% Similarity=0.126 Sum_probs=70.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc---h---hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccC
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN---Q---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~---~---e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~ 131 (270)
+..+.+.+.+|.|+|.+.++..| . +.++++.+. .| +..+++ ..|.++++...+.. .
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~---~~------------~~~v~a-G~V~t~~~a~~~~~--a 302 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSN---YP------------HVDIIA-GNVVTADQAKNLID--A 302 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhh---CC------------CceEEE-CCcCCHHHHHHHHH--c
Confidence 56899999999999999988632 1 222222221 01 222222 36788888666665 3
Q ss_pred CCceEEEe-CC----------C---CeeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 132 QAENIVID-LP----------D---WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 132 ~~~~vvv~-~~----------D---WtiIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.++.+.+. .. + +++-.+.++...+...+..+|+ .+.++.|+.. +|..|+|+|++-.-
T Consensus 303 Gad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~k---Ala~GA~~Vm~G~~ 375 (495)
T PTZ00314 303 GADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICK---ALALGADCVMLGSL 375 (495)
T ss_pred CCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH---HHHcCCCEEEECch
Confidence 56777652 11 2 3333344554444455678999 8999988754 56799999998764
No 61
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=74.17 E-value=1.9 Score=35.50 Aligned_cols=55 Identities=24% Similarity=0.240 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhccccccccceeeeEEEEEEE
Q 024251 168 TPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223 (270)
Q Consensus 168 ~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~~~~~~~~~l~L~~a~Vt~V 223 (270)
|+-+.++...+|.+|.||++--.=--+--..+|+.+... ..+..+.+.||||..|
T Consensus 43 ~~~~re~l~qaLT~G~egav~f~~k~g~R~~IKe~~~E~-s~k~~~~~sPatvR~v 97 (98)
T PF11247_consen 43 SGFQREMLVQALTHGPEGAVAFVVKQGIREAIKEMLSEY-SDKESFKFSPATVREV 97 (98)
T ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh-ccccceeecCceEEee
Confidence 899999999999999999872111000111223333332 2567899999999765
No 62
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=73.95 E-value=29 Score=29.37 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=41.8
Q ss_pred CCceEEEeCCCCee--echhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQV--IPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWti--IPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
+.+.++++...... ..--.++..++ .....|+..... ++......+++.|++|.+.+|.++.++.+.
T Consensus 49 ~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~-~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~a 119 (216)
T PRK10840 49 DAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMN-NNPAILSAVLDLDIEGIVLKQGAPTDLPKA 119 (216)
T ss_pred CCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEec-CCHHHHHHHHHCCCeEEEECCCCHHHHHHH
Confidence 46778886432221 12223444433 234566665544 455667788999999999999999876543
No 63
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=73.15 E-value=28 Score=26.69 Aligned_cols=101 Identities=15% Similarity=0.213 Sum_probs=59.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
+.++..-.+.|++-++++.+ .+.++++..- |.. ..+....+++.++++-. .+++.+++.
T Consensus 11 ~~i~~~L~~~~~~vvvid~d-~~~~~~~~~~-----------------~~~-~i~gd~~~~~~l~~a~i--~~a~~vv~~ 69 (116)
T PF02254_consen 11 REIAEQLKEGGIDVVVIDRD-PERVEELREE-----------------GVE-VIYGDATDPEVLERAGI--EKADAVVIL 69 (116)
T ss_dssp HHHHHHHHHTTSEEEEEESS-HHHHHHHHHT-----------------TSE-EEES-TTSHHHHHHTTG--GCESEEEEE
T ss_pred HHHHHHHHhCCCEEEEEECC-cHHHHHHHhc-----------------ccc-cccccchhhhHHhhcCc--cccCEEEEc
Confidence 44555555555566666654 4444433322 111 23334466666666544 357778886
Q ss_pred CCCCeeechhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 140 LPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 140 ~~DWtiIPlENlIA~~----q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
..|. -+|+.... .....+|++.+.+.+.++.+-. .|+|-|+.
T Consensus 70 ~~~d----~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~---~g~d~vi~ 115 (116)
T PF02254_consen 70 TDDD----EENLLIALLARELNPDIRIIARVNDPENAELLRQ---AGADHVIS 115 (116)
T ss_dssp SSSH----HHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH---TT-SEEEE
T ss_pred cCCH----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH---CCcCEEEC
Confidence 6654 55654421 1345799999999999888744 89998875
No 64
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=72.69 E-value=11 Score=35.39 Aligned_cols=114 Identities=9% Similarity=0.096 Sum_probs=61.6
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEe-cChhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V-~~~ed~e~~~~~~~~~~~vv 137 (270)
-++.+..|-|.|+|++|+|+=-.|...++... .+..|.....++.- ++++.++.++.... +++-
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~-------------~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~--gFiY 168 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREA-------------AKKHGLDLIPLVAPTTPEERIKKIAKQAS--GFIY 168 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHH-------------HHHTT-EEEEEEETTS-HHHHHHHHHH-S--SEEE
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHhCC--cEEE
Confidence 35688999999999999986222333333221 11223333333333 34555555555432 3333
Q ss_pred Ee-CCC---C-ee--echhhhhhcccCCC-ceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 138 ID-LPD---W-QV--IPAENIVASFQGSG-KTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 138 v~-~~D---W-ti--IPlENlIA~~q~~~-~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+- ..+ = +- -.+++.|..+.... .-|+. .++++++|+.+. .|+|||++-+.
T Consensus 169 ~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~----~~aDGvIVGSa 228 (259)
T PF00290_consen 169 LVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA----AGADGVIVGSA 228 (259)
T ss_dssp EESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH----TTSSEEEESHH
T ss_pred eeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH----ccCCEEEECHH
Confidence 21 111 1 11 24677777765443 23333 478999988765 89999998764
No 65
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=72.26 E-value=68 Score=28.15 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=63.0
Q ss_pred hhHHHHHHHhCCcEEEEcCc-chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSE-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~-~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
.++..++++.|+..+-+... +.+.+++..++-++.+ +.++ ++.....++. +.++++.+.. ..++.+++
T Consensus 30 ~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~-~~~~---~~~~~~~ig~-----~~~~~~~a~~--aGad~I~~ 98 (219)
T cd04729 30 AAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGL-IKRD---YPDSEVYITP-----TIEEVDALAA--AGADIIAL 98 (219)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEE-EecC---CCCCCceeCC-----CHHHHHHHHH--cCCCEEEE
Confidence 67888899999998765432 2344444333322211 0111 1100111111 2234333333 34667777
Q ss_pred eCCC---CeeechhhhhhcccCCC-ceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 139 DLPD---WQVIPAENIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 139 ~~~D---WtiIPlENlIA~~q~~~-~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
+... ..--.+++++..+.... -.++..+.+++|++. +.+.|+|.+.+.
T Consensus 99 ~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~---a~~~G~d~i~~~ 150 (219)
T cd04729 99 DATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALN---AAKLGFDIIGTT 150 (219)
T ss_pred eCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHH---HHHcCCCEEEcc
Confidence 5433 22124567776655544 678889999999844 566799998764
No 66
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=71.53 E-value=13 Score=36.20 Aligned_cols=101 Identities=17% Similarity=0.259 Sum_probs=60.3
Q ss_pred chhHHHHHHHh---CCcEEEEcCcchhhhhhccceeeeeeeeecC-CccccCCCCeEEEEEEecChhhhhhhccccCCCc
Q 024251 59 SKQVMTAAVER---GWNTFVFLSENQQLAIDWSTIALLDPLFIKE-GEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 59 ~Ke~vT~ALEs---G~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~-g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
..+.+.+|=+- |+..+.+..+|...++++..++-+. +.= +..+. .|+ -|.+|+.++.+.... +
T Consensus 183 ~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~a---vmPl~~pIG-sg~------gv~~p~~i~~~~e~~---~ 249 (326)
T PRK11840 183 MVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVA---VMPLGAPIG-SGL------GIQNPYTIRLIVEGA---T 249 (326)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEE---Eeecccccc-CCC------CCCCHHHHHHHHHcC---C
Confidence 56777788777 8888777777777777666664321 110 11111 222 245777766655441 0
Q ss_pred eEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec-----CCHHHHHH
Q 024251 135 NIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVLA 198 (270)
Q Consensus 135 ~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~~~v~~ 198 (270)
+| .-+=|.+.+++||.. ++|.|+|||++.+ +||..+.+
T Consensus 250 -----------vp------------VivdAGIg~~sda~~---AmelGadgVL~nSaIa~a~dPv~Ma~ 292 (326)
T PRK11840 250 -----------VP------------VLVDAGVGTASDAAV---AMELGCDGVLMNTAIAEAKNPVLMAR 292 (326)
T ss_pred -----------Cc------------EEEeCCCCCHHHHHH---HHHcCCCEEEEcceeccCCCHHHHHH
Confidence 11 112356788888865 5789999999876 67765443
No 67
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=71.38 E-value=9.2 Score=36.68 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=35.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
.+|..+|.|.+||+. +++.|+|.|+|+.=++++++++.+.+
T Consensus 209 ~kIeVEv~sleea~e---a~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 209 VPVEVEVENLDELDQ---ALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred CCEEEEeCCHHHHHH---HHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 579999999999875 56799999999999999988877754
No 68
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=71.30 E-value=22 Score=35.72 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=63.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
+.+...-.+.|.+-++++++ .++++++.+. |.. .++.+.++++-++++-. .+++.+++.
T Consensus 430 ~~la~~L~~~g~~vvvId~d-~~~~~~~~~~-----------------g~~-~i~GD~~~~~~L~~a~i--~~a~~viv~ 488 (558)
T PRK10669 430 SLLGEKLLAAGIPLVVIETS-RTRVDELRER-----------------GIR-AVLGNAANEEIMQLAHL--DCARWLLLT 488 (558)
T ss_pred HHHHHHHHHCCCCEEEEECC-HHHHHHHHHC-----------------CCe-EEEcCCCCHHHHHhcCc--cccCEEEEE
Confidence 55555555778888888764 5555555433 111 23444566666555443 367778776
Q ss_pred CCCCeeechhh--hhh--cccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 140 LPDWQVIPAEN--IVA--SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 140 ~~DWtiIPlEN--lIA--~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..|. -+| ++. .......+|++.+++.++.+.+ .+.|+|-|+.+.+
T Consensus 489 ~~~~----~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l---~~~Gad~vv~p~~ 537 (558)
T PRK10669 489 IPNG----YEAGEIVASAREKRPDIEIIARAHYDDEVAYI---TERGANQVVMGER 537 (558)
T ss_pred cCCh----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH---HHcCCCEEEChHH
Confidence 5553 233 221 2223456999999999988876 4689998874443
No 69
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=71.18 E-value=33 Score=30.18 Aligned_cols=132 Identities=17% Similarity=0.265 Sum_probs=69.4
Q ss_pred EEEeCchhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhh--hhh
Q 024251 54 WIWTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE--LQQ 125 (270)
Q Consensus 54 Wiw~~~Ke~vT~ALEsG~d~~vv~~~~~------e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed--~e~ 125 (270)
|+-..+.+++..|.++|+|.++++-||. +.++. .+.- . +..-......+. ..+++|.+.+. .++
T Consensus 5 ~vp~~~~~~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~--~~~~--~--~~~~~~~~~~~~--~~~VRvn~~~~~~~~~ 76 (221)
T PF03328_consen 5 FVPANSPKMLEKAAASGADFVILDLEDGVPPDEKDEARE--DLAE--A--LRSIRAARAAGS--EIIVRVNSLDSPHIER 76 (221)
T ss_dssp EEESTSHHHHHHHHTTCSSEEEEESSTTSSGGGHHHHHH--HHHH--H--HHHHHHHTTSSS--EEEEE-SSTTCHHHHH
T ss_pred EEeCCCHHHHHHHHhcCCCEEEEeCcccCCcccchhhHH--HHHH--H--HHhhcccccccc--cceecCCCCCcchhhh
Confidence 4444789999999999999999998762 12221 1100 0 000011122233 35556665432 222
Q ss_pred -hccccCCCceEEEeCCCCeeechhhhhhccc---------CCCceEEEEcCCHHHHHHHHHHHhc-ccCeEEEecCCHH
Q 024251 126 -LQPADGQAENIVIDLPDWQVIPAENIVASFQ---------GSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (270)
Q Consensus 126 -~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q---------~~~~~i~a~v~~~~eA~~~l~~LE~-G~DGVvl~~~d~~ 194 (270)
+.......+.|++-.- =+.=-++.+++.+. +.++.|+..+.|++--.-+-+++.. |+||+.+-+.|..
T Consensus 77 Dl~~l~~g~~gI~lP~v-es~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dls 155 (221)
T PF03328_consen 77 DLEALDAGADGIVLPKV-ESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADLS 155 (221)
T ss_dssp HHHHHHTTSSEEEETT---SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHH
T ss_pred hhhhcccCCCeeecccc-CcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHHH
Confidence 1122234566665111 00111233333332 2346788899999888888888865 8899998877653
No 70
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=70.73 E-value=39 Score=31.02 Aligned_cols=135 Identities=19% Similarity=0.233 Sum_probs=70.7
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEEcC----cc--------hhhhhhccce-eeeeeeeecCCccccCCCCeEEEEEEec-
Q 024251 53 VWIWTESKQVMTAAVERGWNTFVFLS----EN--------QQLAIDWSTI-ALLDPLFIKEGEVYDSGDRRVGSIIEVS- 118 (270)
Q Consensus 53 vWiw~~~Ke~vT~ALEsG~d~~vv~~----~~--------~e~a~~l~~i-~~i~~l~~~~g~~~~~~gk~v~~~v~V~- 118 (270)
+++--.+.+.+ --|+|+++|++ .| .+-+..++++ .+.. .+..|.++-..|..++.+....
T Consensus 57 vilfp~~~~~i----~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e--~i~~gYiv~~~~~~v~~v~~a~~ 130 (219)
T cd02812 57 VILFPSNPEAV----SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLE--LIPEGYLVLNPDSTVARVTGAKT 130 (219)
T ss_pred EEEeCCCcccc----CcCCCEEEEEeeecCCCchHHHHHHHHHHHHhcccccccc--ccceEEEEECCCCceeeeeccCc
Confidence 44444444444 36799999985 22 2233333331 0111 1223444444455666555544
Q ss_pred --Chhhhhhhc---cccCCCceEEEeCCCCeeechhhhhhccc---CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 119 --TPQELQQLQ---PADGQAENIVIDLPDWQVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 119 --~~ed~e~~~---~~~~~~~~vvv~~~DWtiIPlENlIA~~q---~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
++|+....+ ..++ -..+-+++.+-. +|.|.+-+-.+ +..--+=..++|+++|+.+ ++.|+|+|++-+
T Consensus 131 ~~~~e~~~ayA~aae~~g-~~ivyLe~SG~~-~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l---~~aGAD~VVVGs 205 (219)
T cd02812 131 DLKPEDAAAYALAAEYLG-MPIVYLEYSGAY-GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEM---AEAGADTIVVGN 205 (219)
T ss_pred CCCHHHHHHHHHHHHHcC-CeEEEeCCCCCc-CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHH---HHcCCCEEEECc
Confidence 344433322 2233 667777754433 66554432222 2223344568899998875 477999999987
Q ss_pred C---CHHHHHH
Q 024251 191 E---DVKAVLA 198 (270)
Q Consensus 191 ~---d~~~v~~ 198 (270)
- |++.+++
T Consensus 206 ai~~~p~~~~~ 216 (219)
T cd02812 206 IVEEDPNAALE 216 (219)
T ss_pred hhhCCHHHHHH
Confidence 4 5554433
No 71
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=70.09 E-value=14 Score=35.23 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=64.0
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcc--h----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 56 WTESKQVMTAAVERGWNTFVFLSEN--Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 56 w~~~Ke~vT~ALEsG~d~~vv~~~~--~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
+.+.++.+.+.+|.|++.|.++..+ . +.++++.+- .| +..+.+ ..+.++++...+..
T Consensus 92 ~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~---~p------------~v~Vi~-G~v~t~~~A~~l~~- 154 (325)
T cd00381 92 REDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK---YP------------NVDVIA-GNVVTAEAARDLID- 154 (325)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH---CC------------CceEEE-CCCCCHHHHHHHHh-
Confidence 3466899999999999998876421 1 222222211 00 112211 35677777555543
Q ss_pred cCCCceEEEeCC-----------CCe---eechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 130 DGQAENIVIDLP-----------DWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 130 ~~~~~~vvv~~~-----------DWt---iIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..+|.+++... +|- .-.+.++...+...+..||+ .+.+..++..+ |+.|+|||++-+.
T Consensus 155 -aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kA---la~GA~~VmiGt~ 228 (325)
T cd00381 155 -AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKA---LAAGADAVMLGSL 228 (325)
T ss_pred -cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH---HHcCCCEEEecch
Confidence 35777776210 121 11223333333333466887 67777776555 5689999998544
No 72
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=69.29 E-value=14 Score=37.48 Aligned_cols=136 Identities=17% Similarity=0.205 Sum_probs=87.1
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
++|++.+.-|++-|+|.+-+.- .+++.++++.++ +...|..+..+.+|.+++.++.+..-....|-
T Consensus 174 ekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~-------------l~~~~~~~~iiakIEt~~av~nldeI~~~~Dg 240 (480)
T cd00288 174 EKDKADLRFGVEQGVDMIFASFVRKASDVLEIREV-------------LGEKGKDIKIIAKIENQEGVNNFDEILEASDG 240 (480)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCceEEEEECCHHHHHhHHHHHHhcCE
Confidence 3578899999999999766542 234455544443 12234556788899999988887766656888
Q ss_pred EEEeCCCCe-eechhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHHhcccCeEEEecCC----
Q 024251 136 IVIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (270)
Q Consensus 136 vvv~~~DWt-iIPlENlIA-------~~q~~~~~i~a-----------~v~~~~eA~~~l~~LE~G~DGVvl~~~d---- 192 (270)
++|--.|=. -+|.|.+.+ .....+.-++. ...+-.|+--...+...|+|||+|.-+.
T Consensus 241 ImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~ 320 (480)
T cd00288 241 IMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGK 320 (480)
T ss_pred EEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCC
Confidence 888444432 356666533 22223222332 1234478888888999999999996653
Q ss_pred -H-HHHHHHHHhhcc
Q 024251 193 -V-KAVLALKEYFDG 205 (270)
Q Consensus 193 -~-~~v~~l~~~~~~ 205 (270)
| ..|+-+.+++.+
T Consensus 321 yPveaV~~m~~I~~~ 335 (480)
T cd00288 321 YPVEAVKAMARICLE 335 (480)
T ss_pred CHHHHHHHHHHHHHH
Confidence 2 456666666643
No 73
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=69.20 E-value=22 Score=33.54 Aligned_cols=109 Identities=9% Similarity=0.084 Sum_probs=61.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~-e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
.++.+..++|.|++.|.+...+. +.++++. ..|.. ++..|.+.++...+.. ..+|.++
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk-----------------~~g~~--v~~~v~s~~~a~~a~~--~GaD~Iv 134 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRLK-----------------ENGVK--VIPVVASVALAKRMEK--AGADAVI 134 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH-----------------HcCCE--EEEEcCCHHHHHHHHH--cCCCEEE
Confidence 46788889999999888754322 1222222 22322 3456777776544443 3588888
Q ss_pred EeCCCCe----eechhhhhhcccCC-CceEEEE--cCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 138 IDLPDWQ----VIPAENIVASFQGS-GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 138 v~~~DWt----iIPlENlIA~~q~~-~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+...+.. -.|.-.|+.++-+. +..|++. +.|.++++. +|+.|+|||++-+.
T Consensus 135 v~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~---al~~GA~gV~iGt~ 192 (307)
T TIGR03151 135 AEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAA---AFALGAEAVQMGTR 192 (307)
T ss_pred EECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHH---HHHcCCCEeecchH
Confidence 8654211 22333344433221 3345543 566666554 45579999998764
No 74
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=69.16 E-value=11 Score=36.30 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=35.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHh------cccCeEEEecC---------CHHHHHHHHHhh
Q 024251 160 KTVFAISKTPSEAQIFLEALE------QGLGGIVLKVE---------DVKAVLALKEYF 203 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE------~G~DGVvl~~~---------d~~~v~~l~~~~ 203 (270)
.+|..++.|.+||+.++ + .|+|.|+|+.= +++++++..+.+
T Consensus 204 ~kIeVEv~tleea~ea~---~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~ 259 (308)
T PLN02716 204 MKIEVETRTLEEVKEVL---EYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI 259 (308)
T ss_pred eeEEEEECCHHHHHHHH---HhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh
Confidence 57999999999998765 6 79999999998 999888776655
No 75
>PLN02765 pyruvate kinase
Probab=68.95 E-value=20 Score=37.02 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=87.0
Q ss_pred eCchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCC-eEEEEEEecChhhhhhhccccCCC
Q 024251 57 TESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQA 133 (270)
Q Consensus 57 ~~~Ke~v-T~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk-~v~~~v~V~~~ed~e~~~~~~~~~ 133 (270)
+.||+.+ .-|++-|+|.+-..- .+++.+.++.++ +++.|. .+..+.+|.+++.++.+..-....
T Consensus 206 ekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eIi~~s 272 (526)
T PLN02765 206 EKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREF-------------LSSLGLSQTQIFAKIENVEGLTHFDEILQEA 272 (526)
T ss_pred HhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCCcEEEEECCHHHHHHHHHHHHhc
Confidence 3567777 689999999544332 124444444443 222232 566888999999999888877778
Q ss_pred ceEEEeCCCCe-eechhhhhh-------cccCCCceEEE----------EcCCHHHHHHHHHHHhcccCeEEEecCC---
Q 024251 134 ENIVIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA----------ISKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (270)
Q Consensus 134 ~~vvv~~~DWt-iIPlENlIA-------~~q~~~~~i~a----------~v~~~~eA~~~l~~LE~G~DGVvl~~~d--- 192 (270)
|-++|--.|=- =||+|.+-. .+...+.-+|+ ...+-.|+--...+.--|+|+|+|.-+.
T Consensus 273 DgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G 352 (526)
T PLN02765 273 DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRG 352 (526)
T ss_pred CEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEEehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCC
Confidence 88888555544 477777533 22222223443 1223377778888999999999999553
Q ss_pred --H-HHHHHHHHhhcc
Q 024251 193 --V-KAVLALKEYFDG 205 (270)
Q Consensus 193 --~-~~v~~l~~~~~~ 205 (270)
| +.|+-+.+++.+
T Consensus 353 ~yPveaV~~m~~I~~~ 368 (526)
T PLN02765 353 LYPVETISTVGRICAE 368 (526)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3 446666666643
No 76
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=68.25 E-value=14 Score=33.40 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=60.0
Q ss_pred CchhHHHHHHHhCCcEEEEcC---cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC-hhhhhhhccccCCC
Q 024251 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQA 133 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~---~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~-~ed~e~~~~~~~~~ 133 (270)
.-.+.+..+.+.|+|+++++. |..+...++- +.+++.|.+.+..+.-.+ .+.++.+.. ..
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~-------------~~~~~~Gl~~~~~v~p~T~~e~l~~~~~---~~ 152 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYV-------------EIIKNKGLKPVFFTSPKFPDLLIHRLSK---LS 152 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHH-------------HHHHHcCCCEEEEECCCCCHHHHHHHHH---hC
Confidence 446678999999999999973 2111222111 112344666666555544 344444443 33
Q ss_pred ceEE-Ee---CCCCeeech-hhhhhcccCCC--ceEE--EEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 134 ENIV-ID---LPDWQVIPA-ENIVASFQGSG--KTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 134 ~~vv-v~---~~DWtiIPl-ENlIA~~q~~~--~~i~--a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+.++ +. ..+.+.+|- .+.+..+.... ..|+ ..++++++++ .+++.|+||+++-+.
T Consensus 153 ~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~---~~~~~gaD~vvvGSa 216 (244)
T PRK13125 153 PLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDAR---DALSAGADGVVVGTA 216 (244)
T ss_pred CCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHH---HHHHcCCCEEEECHH
Confidence 3333 31 123333222 33444433221 1233 2366777766 456899999998763
No 77
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=67.86 E-value=22 Score=30.28 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=17.9
Q ss_pred CchhHHHHHHHhCCcEEEEcCc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
...+.+..+.+.|+|++++..+
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~~ 88 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHPE 88 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEccC
Confidence 3456788889999999998865
No 78
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=67.49 E-value=83 Score=27.27 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=62.2
Q ss_pred chhHHHHHHHhCCcE--EEEcCcc-----hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccC
Q 024251 59 SKQVMTAAVERGWNT--FVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~--~vv~~~~-----~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~ 131 (270)
+.+.+..|++.|+|. |++.+.. .+.++++.++.. +.-+.|++++. .+.+++..++.. .
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~-------------~~~~~V~v~vn-~~~~~i~~ia~~-~ 72 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALP-------------PFVKRVGVFVN-EDLEEILEIAEE-L 72 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCC-------------CCCcEEEEEeC-CCHHHHHHHHHh-c
Confidence 467889999999995 5654321 334444444311 11134444421 234544555544 3
Q ss_pred CCceEEEeCCCCeeechhhhhhcccCCCceEE--EEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~--a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
..+.|-+...+. .-+...+-..+ +.+++ ..+.+..+... ....+.|+|.+++++...
T Consensus 73 ~~d~Vqlhg~e~-~~~~~~l~~~~---~~~~i~~i~~~~~~~~~~-~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 73 GLDVVQLHGDES-PEYCAQLRARL---GLPVIKAIRVKDEEDLEK-AAAYAGEVDAILLDSKSG 131 (203)
T ss_pred CCCEEEECCCCC-HHHHHHHHhhc---CCcEEEEEecCChhhHHH-hhhccccCCEEEEcCCCC
Confidence 578888877651 11222222211 23455 55555555433 455678999999988643
No 79
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=67.31 E-value=49 Score=26.82 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=47.9
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
..+.++...... ....+.++++......-.+ +++..++.. ...++... +..+.......++.|+++.+.+|.++.
T Consensus 31 ~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~-~~~~~l~~~~~~~~ii~ls-~~~~~~~~~~~~~~ga~~~i~kp~~~~ 107 (204)
T PRK09958 31 LTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGI-QVLETLRKRQYSGIIIIVS-AKNDHFYGKHCADAGANGFVSKKEGMN 107 (204)
T ss_pred eCCHHHHHHHHH-ccCCCEEEEeCCCCCCCHH-HHHHHHHhhCCCCeEEEEe-CCCCHHHHHHHHHCCCCEEEecCCCHH
Confidence 455554333222 2346778886554433222 344444432 23444443 344556667889999999999999998
Q ss_pred HHHHHHHh
Q 024251 195 AVLALKEY 202 (270)
Q Consensus 195 ~v~~l~~~ 202 (270)
++.+..+.
T Consensus 108 ~l~~~i~~ 115 (204)
T PRK09958 108 NIIAAIEA 115 (204)
T ss_pred HHHHHHHH
Confidence 76654443
No 80
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=67.07 E-value=11 Score=33.82 Aligned_cols=89 Identities=17% Similarity=0.064 Sum_probs=52.6
Q ss_pred EEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCC-CceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 111 v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~-~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
+-..+...++++....+..+.+.+.-+++.+ ++.-.....|+++... +..++..+.+.=....+-.+++.|+|+++..
T Consensus 12 ~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt-~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 12 LIAILRGITPDEALAHVGALIEAGFRAIEIP-LNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEe-CCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 3345566788887776666544444444443 3333444455555333 2245555444444444556788999999998
Q ss_pred cCCHHHHHHHH
Q 024251 190 VEDVKAVLALK 200 (270)
Q Consensus 190 ~~d~~~v~~l~ 200 (270)
-.|++-++..+
T Consensus 91 ~~~~~v~~~~~ 101 (206)
T PRK09140 91 NTDPEVIRRAV 101 (206)
T ss_pred CCCHHHHHHHH
Confidence 88887665443
No 81
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=67.05 E-value=20 Score=33.85 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=24.8
Q ss_pred EcCCHHHHHHHHHHHhcccCeEEEec-----CCHHHH-HHHHHhh
Q 024251 165 ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV-LALKEYF 203 (270)
Q Consensus 165 ~v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~~~v-~~l~~~~ 203 (270)
.+.+++||+.+ +|.|+|||++.+ +||..+ ++++..+
T Consensus 183 GI~tpeda~~A---melGAdgVlV~SAIt~a~dP~~ma~af~~Av 224 (248)
T cd04728 183 GIGTPSDAAQA---MELGADAVLLNTAIAKAKDPVAMARAFKLAV 224 (248)
T ss_pred CCCCHHHHHHH---HHcCCCEEEEChHhcCCCCHHHHHHHHHHHH
Confidence 46889998765 569999999865 567654 3334433
No 82
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=67.01 E-value=34 Score=29.05 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=48.4
Q ss_pred CeEEEEEEecChhh--hhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEE---EcCCHHHHHHHHHHHhccc
Q 024251 109 RRVGSIIEVSTPQE--LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGL 183 (270)
Q Consensus 109 k~v~~~v~V~~~ed--~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a---~v~~~~eA~~~l~~LE~G~ 183 (270)
..+..-..+.++.. .+.+. ..+++.+++...... -.++.++..++..+.+++. ...|++|+. .+++.|+
T Consensus 54 ~~i~~~~~v~~~~~~~~~~~~--~aGad~i~~h~~~~~-~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~---~~~~~~~ 127 (202)
T cd04726 54 KIIVADLKTADAGALEAEMAF--KAGADIVTVLGAAPL-STIKKAVKAAKKYGKEVQVDLIGVEDPEKRA---KLLKLGV 127 (202)
T ss_pred CEEEEEEEeccccHHHHHHHH--hcCCCEEEEEeeCCH-HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHCCC
Confidence 34444445555532 22222 246788888776533 3467888888877777765 555666665 4778899
Q ss_pred CeEEEec
Q 024251 184 GGIVLKV 190 (270)
Q Consensus 184 DGVvl~~ 190 (270)
|-|++.|
T Consensus 128 d~v~~~~ 134 (202)
T cd04726 128 DIVILHR 134 (202)
T ss_pred CEEEEcC
Confidence 9999854
No 83
>PRK08114 cystathionine beta-lyase; Provisional
Probab=66.80 E-value=4.3 Score=39.73 Aligned_cols=123 Identities=11% Similarity=0.177 Sum_probs=74.4
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeee---eee-cCC---------ccccCCCCeEEEEEEecChhhhhhh
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFI-KEG---------EVYDSGDRRVGSIIEVSTPQELQQL 126 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~---l~~-~~g---------~~~~~~gk~v~~~v~V~~~ed~e~~ 126 (270)
=|-.-++||.|-.+++|++.......-+..+ .++ |++ ++. ..++..|.++ .++...+.++++.+
T Consensus 67 le~~la~LEg~~~a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v-~~vd~~d~~~l~~~ 143 (395)
T PRK08114 67 LQEAMCELEGGAGCALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTT-TWFDPLIGADIAKL 143 (395)
T ss_pred HHHHHHHHhCCCeEEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEE-EEECCCCHHHHHHh
Confidence 4556678999999999998643333222111 121 222 222 1234456544 23334455554443
Q ss_pred ccccCCCceEEEeCC---CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEE
Q 024251 127 QPADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (270)
Q Consensus 127 ~~~~~~~~~vvv~~~---DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVv 187 (270)
.. .+...|.++.. ..++.|++.|.+.+...+..++..|.+..-.-..+..++.|+|=|+
T Consensus 144 l~--~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv 205 (395)
T PRK08114 144 IQ--PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISI 205 (395)
T ss_pred cC--CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEE
Confidence 32 23567777765 4678999999988765432367777777777778999999998554
No 84
>PRK00208 thiG thiazole synthase; Reviewed
Probab=66.74 E-value=21 Score=33.70 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=22.8
Q ss_pred EEcCCHHHHHHHHHHHhcccCeEEEec-----CCHHHHH
Q 024251 164 AISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVL 197 (270)
Q Consensus 164 a~v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~~~v~ 197 (270)
+.+.+++||+.+ +|.|+|||++.+ +||..+.
T Consensus 182 aGI~tpeda~~A---melGAdgVlV~SAItka~dP~~ma 217 (250)
T PRK00208 182 AGIGTPSDAAQA---MELGADAVLLNTAIAVAGDPVAMA 217 (250)
T ss_pred CCCCCHHHHHHH---HHcCCCEEEEChHhhCCCCHHHHH
Confidence 346789998765 568999999865 5676643
No 85
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=66.51 E-value=19 Score=34.81 Aligned_cols=52 Identities=13% Similarity=0.223 Sum_probs=38.3
Q ss_pred CCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
+.+.+++.+-++. + +.+++..+.+++..|.|+++|+.+ ++.|+|+|++.-..
T Consensus 82 ~v~~V~~~~G~P~----~--~~~lk~~Gi~v~~~v~s~~~A~~a---~~~GaD~vVaqG~E 133 (320)
T cd04743 82 KPTFALIAGGRPD----Q--ARALEAIGISTYLHVPSPGLLKQF---LENGARKFIFEGRE 133 (320)
T ss_pred CCcEEEEcCCChH----H--HHHHHHCCCEEEEEeCCHHHHHHH---HHcCCCEEEEecCc
Confidence 4556666554332 2 466777789999999999999774 57899999987653
No 86
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=66.02 E-value=28 Score=34.54 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=69.8
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEE
Q 024251 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
++.+.+.+.+|.|+|.+.++.-|......+..|..+..-+ + +..+.+ ..|.++++...+... .++.+.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~-------~--~~~vi~-G~v~t~~~a~~l~~a--Gad~i~ 291 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTY-------P--DLDIIA-GNVATAEQAKALIDA--GADGLR 291 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhC-------C--CCCEEE-EeCCCHHHHHHHHHh--CCCEEE
Confidence 4578888999999999999874321111111222211100 0 122222 477888886666653 456665
Q ss_pred Ee-C----------CCCee---echhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 138 ID-L----------PDWQV---IPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 138 v~-~----------~DWti---IPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
+. . .+|-+ =.+.++...++..+..|++ .++++.|+..+ |+.|+|.|++-.
T Consensus 292 vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kA---la~GA~~V~~G~ 357 (450)
T TIGR01302 292 VGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKA---LAAGADAVMLGS 357 (450)
T ss_pred ECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH---HHcCCCEEEECc
Confidence 42 1 13333 3334444444555678999 89999998655 567999999864
No 87
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=65.43 E-value=8.8 Score=33.12 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcccCeEEEecCCHHH-------------HHHHHHhhcccccccccee
Q 024251 170 SEAQIFLEALEQGLGGIVLKVEDVKA-------------VLALKEYFDGRNEVSNLLS 214 (270)
Q Consensus 170 ~eA~~~l~~LE~G~DGVvl~~~d~~~-------------v~~l~~~~~~~~~~~~~l~ 214 (270)
-++...|.+|.+|+|||++.-=-.+| +.-|++.+.+...+.++++
T Consensus 41 vn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~ 98 (132)
T COG1908 41 VNPEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVR 98 (132)
T ss_pred cCHHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEE
Confidence 47889999999999999986533322 4456667766555555444
No 88
>PLN02334 ribulose-phosphate 3-epimerase
Probab=65.33 E-value=34 Score=30.47 Aligned_cols=125 Identities=15% Similarity=0.212 Sum_probs=62.5
Q ss_pred hhHHHHHHHhCCcEEEEcCc---chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC--Cc
Q 024251 60 KQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--AE 134 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~---~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~--~~ 134 (270)
-+.+..|++.|+|++.|.-+ +....+.+.. +.+.|+.+|..+.-.++.+ .+...... .|
T Consensus 78 ~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~--------------i~~~g~~iGls~~~~t~~~--~~~~~~~~~~~D 141 (229)
T PLN02334 78 EDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQ--------------IKSAGMKAGVVLNPGTPVE--AVEPVVEKGLVD 141 (229)
T ss_pred HHHHHHHHHcCCCEEEEeeccccchhHHHHHHH--------------HHHCCCeEEEEECCCCCHH--HHHHHHhccCCC
Confidence 46778889999999966554 1111111111 1233566776654323333 22222233 78
Q ss_pred eEEE---e--CC--CCeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeEEE-----ecCCH-HHHHHH
Q 024251 135 NIVI---D--LP--DWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVL-----KVEDV-KAVLAL 199 (270)
Q Consensus 135 ~vvv---~--~~--DWtiIPlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl-----~~~d~-~~v~~l 199 (270)
++.+ . +. .|....+|.+-. +... +..|.+ ..-. ..+.+-++.+.|+||+++ ..+|+ ..++++
T Consensus 142 yi~~~~v~pg~~~~~~~~~~~~~i~~-~~~~~~~~~I~a-~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 142 MVLVMSVEPGFGGQSFIPSMMDKVRA-LRKKYPELDIEV-DGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred EEEEEEEecCCCccccCHHHHHHHHH-HHHhCCCCcEEE-eCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHH
Confidence 8855 2 12 233344555432 2211 123333 1111 234566778999999975 44565 345555
Q ss_pred HHhh
Q 024251 200 KEYF 203 (270)
Q Consensus 200 ~~~~ 203 (270)
++.+
T Consensus 219 ~~~~ 222 (229)
T PLN02334 219 RASV 222 (229)
T ss_pred HHHH
Confidence 5544
No 89
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=64.79 E-value=65 Score=26.22 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=40.6
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-...-.++ ++..++. ....++... ...+......+++.|++|.+.+|-++.++.+.
T Consensus 44 ~~d~illd~~~~~~~g~~-~~~~l~~~~~~~pii~ls-~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~ 111 (222)
T PRK10643 44 HYSLVVLDLGLPDEDGLH-LLRRWRQKKYTLPVLILT-ARDTLEDRVAGLDVGADDYLVKPFALEELHAR 111 (222)
T ss_pred CCCEEEEECCCCCCCHHH-HHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHH
Confidence 467788865433332222 3333332 234455443 34455667788999999999999999876553
No 90
>PRK15452 putative protease; Provisional
Probab=64.46 E-value=82 Score=31.68 Aligned_cols=136 Identities=9% Similarity=0.090 Sum_probs=72.9
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec-Chhhhhhhc
Q 024251 52 RVWIWTESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQ 127 (270)
Q Consensus 52 ~vWiw~~~Ke~vT~ALEsG~d~~vv~~~~---~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~-~~ed~e~~~ 127 (270)
++-....+-+-+.+|++.|+|+|.+.-+. ...+..+.. .-+ .+.-+.....|+++-+-+... ..++++.+.
T Consensus 5 eLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~-edl----~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH-ENL----ALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCH-HHH----HHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 45556778999999999999999995421 000000000 000 000122345566654333322 233443333
Q ss_pred ccc-----CCCceEEEeCCCCeeechhhhhhcccCCCceEEE----EcCCHHHHHHHHHHHhcccCeEEEecC-CHHHHH
Q 024251 128 PAD-----GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA----ISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVL 197 (270)
Q Consensus 128 ~~~-----~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a----~v~~~~eA~~~l~~LE~G~DGVvl~~~-d~~~v~ 197 (270)
..+ ...|-+|+ .|+-+|- ++.+. ..+..|.+ .+.|...++.+. +.|+++|+|+++ +..||+
T Consensus 80 ~~l~~l~~~gvDgvIV--~d~G~l~---~~ke~-~p~l~ih~stqlni~N~~a~~f~~---~lG~~rvvLSrELsl~EI~ 150 (443)
T PRK15452 80 RDLEPVIAMKPDALIM--SDPGLIM---MVREH-FPEMPIHLSVQANAVNWATVKFWQ---QMGLTRVILSRELSLEEIE 150 (443)
T ss_pred HHHHHHHhCCCCEEEE--cCHHHHH---HHHHh-CCCCeEEEEecccCCCHHHHHHHH---HCCCcEEEECCcCCHHHHH
Confidence 222 23566666 4555552 22221 11223433 356767666664 579999999999 788888
Q ss_pred HHHH
Q 024251 198 ALKE 201 (270)
Q Consensus 198 ~l~~ 201 (270)
++++
T Consensus 151 ~i~~ 154 (443)
T PRK15452 151 EIRQ 154 (443)
T ss_pred HHHh
Confidence 7754
No 91
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=64.24 E-value=59 Score=28.22 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=40.4
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++..-+..=-+| ++..++. ....++..... .+.....++++.|++|.+.+|-+++++.+.
T Consensus 48 ~~~DlvilD~~~p~~~G~e-li~~l~~~~~~~~vI~ls~~-~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~ 116 (239)
T PRK10430 48 TPIDLILLDIYMQQENGLD-LLPVLHEAGCKSDVIVISSA-ADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 (239)
T ss_pred CCCCEEEEecCCCCCCcHH-HHHHHHhhCCCCCEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 3467888865433322222 3333332 23455555443 334456789999999999999998876543
No 92
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=64.21 E-value=71 Score=34.12 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=76.9
Q ss_pred chhHHHHHHHhCCcEEEEcCc--chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 59 SKQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~--~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
++-.|-.|-..|+|+|+.--. +.+..+++-+. ...-|.. ++++|-+.++++.+... .++.+
T Consensus 122 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~-------------a~~lGme--~LvEvh~~~el~~a~~~--ga~ii 184 (695)
T PRK13802 122 TDYQIWEARAHGADLVLLIVAALDDAQLKHLLDL-------------AHELGMT--VLVETHTREEIERAIAA--GAKVI 184 (695)
T ss_pred CHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHH-------------HHHcCCe--EEEEeCCHHHHHHHHhC--CCCEE
Confidence 456677888899998875421 01111111111 1112332 78899999999886653 46677
Q ss_pred EEeCCCCe--eech---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec-----CCHHH-HHHHHHhh
Q 024251 137 VIDLPDWQ--VIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKA-VLALKEYF 203 (270)
Q Consensus 137 vv~~~DWt--iIPl---ENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~~~-v~~l~~~~ 203 (270)
=|+-+|-+ .|-+ ++|...+.. +.-+|+ .+++++|++.+. +.|+||||+-. +||.. +++|...-
T Consensus 185 GINnRdL~tf~vd~~~t~~L~~~ip~-~~~~VsESGI~~~~d~~~l~---~~G~davLIGeslm~~~dp~~~~~~l~~~~ 260 (695)
T PRK13802 185 GINARNLKDLKVDVNKYNELAADLPD-DVIKVAESGVFGAVEVEDYA---RAGADAVLVGEGVATADDHELAVERLVKAG 260 (695)
T ss_pred EEeCCCCccceeCHHHHHHHHhhCCC-CcEEEEcCCCCCHHHHHHHH---HCCCCEEEECHHhhCCCCHHHHHHHHHhcc
Confidence 78888755 2333 334443321 222333 366788887766 69999999844 56643 44443332
Q ss_pred ccccccccceeeeE
Q 024251 204 DGRNEVSNLLSLMK 217 (270)
Q Consensus 204 ~~~~~~~~~l~L~~ 217 (270)
.. ..+++.++|..
T Consensus 261 ~~-~~~~~~~~~~~ 273 (695)
T PRK13802 261 AR-VKASETTPLSE 273 (695)
T ss_pred cc-ccccCCCCccc
Confidence 22 23455555543
No 93
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=63.57 E-value=51 Score=28.77 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+.+-+..+++.|++.+++...
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECch
Confidence 5888899999999999998863
No 94
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=63.48 E-value=22 Score=33.15 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=35.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
...|..+++|.+||+.+ ++.|+|.|.|.|=.++++++..+.+
T Consensus 178 ~~~Igvev~t~eea~~A---~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 178 ALKIEVEVESLEEAEEA---AEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35799999999998765 6899999999999999888877765
No 95
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=63.16 E-value=1e+02 Score=27.67 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=64.4
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhh
Q 024251 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQEL 123 (270)
Q Consensus 52 ~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~ 123 (270)
.+|++- ++.+-+...|+.|++.+++...- .+.+++.++=..+--|-..+|.... .-...+++++
T Consensus 80 ~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~--------~~~~~~~~~~ 151 (233)
T cd04723 80 GLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLK--------PTDFIGPEEL 151 (233)
T ss_pred CEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeecc--------ccCcCCHHHH
Confidence 366665 68899999999999999988642 2333344431112122234342220 0012345544
Q ss_pred hhhccccCCCceEEEeCCCC----eeechhhhhhccc-CCCceEE--EEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 124 QQLQPADGQAENIVIDLPDW----QVIPAENIVASFQ-GSGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 124 e~~~~~~~~~~~vvv~~~DW----tiIPlENlIA~~q-~~~~~i~--a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
-+..... .+.+++..-+= +-..+| ++.++. .....++ ..+++.++++.++. .|++||++.+
T Consensus 152 ~~~~~~~--~~~li~~di~~~G~~~g~~~~-~~~~i~~~~~ipvi~~GGi~s~edi~~l~~---~G~~~vivGs 219 (233)
T cd04723 152 LRRLAKW--PEELIVLDIDRVGSGQGPDLE-LLERLAARADIPVIAAGGVRSVEDLELLKK---LGASGALVAS 219 (233)
T ss_pred HHHHHHh--CCeEEEEEcCccccCCCcCHH-HHHHHHHhcCCCEEEeCCCCCHHHHHHHHH---cCCCEEEEeh
Confidence 3333222 34444422211 112222 222221 1222333 45899999997765 5999999865
No 96
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.85 E-value=20 Score=33.92 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=35.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
..+|..++.|.+||+.+ ++.|+|.|+|.+=.+++++++.+.+
T Consensus 189 ~~~I~VEv~tleea~eA---~~~gaD~I~LD~~~~e~l~~~v~~~ 230 (277)
T PRK05742 189 GKPVEVEVESLDELRQA---LAAGADIVMLDELSLDDMREAVRLT 230 (277)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35799999999997665 5889999999988999888877654
No 97
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=62.35 E-value=1.3e+02 Score=27.59 Aligned_cols=142 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCc--EEEEcCcc-----hhhhhhccceee-eee--eeecCC--------------------------
Q 024251 58 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIAL-LDP--LFIKEG-------------------------- 101 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d--~~vv~~~~-----~e~a~~l~~i~~-i~~--l~~~~g-------------------------- 101 (270)
.+.+-+.+|.+.|+| +|||.+.. .+.++++.+-.. +.. ++.+..
T Consensus 10 t~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e~~~~ 89 (208)
T COG0135 10 TRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDEDPEY 89 (208)
T ss_pred CCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCCCHHH
Q ss_pred --ccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEeCC------------CCeeechhhhhhcccCCCceEEEEcC
Q 024251 102 --EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP------------DWQVIPAENIVASFQGSGKTVFAISK 167 (270)
Q Consensus 102 --~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~------------DWtiIPlENlIA~~q~~~~~i~a~v~ 167 (270)
.+...-+.++--.+.+....+++........++.++++.. ||+.+|-= .-...-++|.==
T Consensus 90 ~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~~~LAGGL 163 (208)
T COG0135 90 IDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKPVMLAGGL 163 (208)
T ss_pred HHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCCEEEECCC
Q ss_pred CHHHHHHHHHHHh-cccC---eEEEecC--CHHHHHHHHHhhcc
Q 024251 168 TPSEAQIFLEALE-QGLG---GIVLKVE--DVKAVLALKEYFDG 205 (270)
Q Consensus 168 ~~~eA~~~l~~LE-~G~D---GVvl~~~--d~~~v~~l~~~~~~ 205 (270)
|++-.+.++...- .|+| ||=-.|. |++.|+++-+.+.+
T Consensus 164 ~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~kv~~f~~~vk~ 207 (208)
T COG0135 164 NPDNVAEAIALGPPYGVDVSSGVESSPGIKDPAKVKAFFEAVKR 207 (208)
T ss_pred CHHHHHHHHHhcCCceEEeccccccCCCCCCHHHHHHHHHHHhc
No 98
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=62.15 E-value=45 Score=30.24 Aligned_cols=112 Identities=10% Similarity=0.059 Sum_probs=61.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC-hhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~-~ed~e~~~~~~~~~~~vvv 138 (270)
.+.+..+.|+|++++++++-+.|...++-+. .++.|.+.+..+.=.+ .+.++.+... ..+++.+
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~~~~~~~-------------~~~~g~~~i~~i~P~T~~~~i~~i~~~--~~~~vy~ 158 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEAEEFREA-------------AKEYGLDLIFLVAPTTPDERIKKIAEL--ASGFIYY 158 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHhh--CCCCEEE
Confidence 6789999999999999976544433222211 2233444444433333 4444554442 2344444
Q ss_pred eC----CCC-e--eechhhhhhcccCCC-ce--EEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 139 DL----PDW-Q--VIPAENIVASFQGSG-KT--VFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 139 ~~----~DW-t--iIPlENlIA~~q~~~-~~--i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
-. .+- + .-+..+.|..+.+.. .. +=..+++.++++. +.+. +||+++-+
T Consensus 159 ~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~---~~~~-ADgvVvGS 216 (242)
T cd04724 159 VSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAE---VAKY-ADGVIVGS 216 (242)
T ss_pred EeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHH---HHcc-CCEEEECH
Confidence 22 111 2 123456666665432 22 3334677777765 5567 99999975
No 99
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=62.00 E-value=11 Score=33.21 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=25.9
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~ 77 (270)
.+.+.+|+|| .+++.|..+++.|+|+|+.+
T Consensus 202 ~~gl~v~~wTvn~~~~~~~l~~~gvdgiiTD 232 (234)
T cd08570 202 KNGKKVFVWTVNTEEDMRYAIRLGVDGVITD 232 (234)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEEeC
Confidence 4578899999 56899999999999999865
No 100
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=61.79 E-value=19 Score=35.17 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=35.1
Q ss_pred CCCceEEEeCC-----------CCeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 131 GQAENIVIDLP-----------DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 131 ~~~~~vvv~~~-----------DWtiIPlENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
...+.++++++ +|.. +-.++.+ .+..|++ .+.++++|+.++ +.|+|+|++.
T Consensus 153 aGvd~I~vhgrt~~~~h~~~~~~~~~--i~~~ik~---~~ipVIaG~V~t~e~A~~l~---~aGAD~V~VG 215 (368)
T PRK08649 153 AGVDLFVIQGTVVSAEHVSKEGEPLN--LKEFIYE---LDVPVIVGGCVTYTTALHLM---RTGAAGVLVG 215 (368)
T ss_pred CCCCEEEEeccchhhhccCCcCCHHH--HHHHHHH---CCCCEEEeCCCCHHHHHHHH---HcCCCEEEEC
Confidence 45899999764 4532 3444443 4567887 788888877666 5899999875
No 101
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.62 E-value=57 Score=28.59 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=70.7
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~---~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
-.+++.++++.|++.+=++..+ .+..+...++ .++ ..++ ...+...++.+.+.. ..++.
T Consensus 26 ~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~---~~~------------~~~g-~gtvl~~d~~~~A~~--~gAdg 87 (187)
T PRK07455 26 GLQMAEAVAAGGMRLIEITWNSDQPAELISQLREK---LPE------------CIIG-TGTILTLEDLEEAIA--AGAQF 87 (187)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHh---CCC------------cEEe-EEEEEcHHHHHHHHH--cCCCE
Confidence 4678999999999988876433 2222222222 110 1111 223455566555544 36788
Q ss_pred EEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC----HHHHHHHHHhh
Q 024251 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 203 (270)
Q Consensus 136 vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d----~~~v~~l~~~~ 203 (270)
+++-..|-.+++.-+... ...++. +.|++|+..+. +.|+|=|-+-|.+ ++-+++++..+
T Consensus 88 v~~p~~~~~~~~~~~~~~-----~~~i~G-~~t~~e~~~A~---~~Gadyv~~Fpt~~~~G~~~l~~~~~~~ 150 (187)
T PRK07455 88 CFTPHVDPELIEAAVAQD-----IPIIPG-ALTPTEIVTAW---QAGASCVKVFPVQAVGGADYIKSLQGPL 150 (187)
T ss_pred EECCCCCHHHHHHHHHcC-----CCEEcC-cCCHHHHHHHH---HCCCCEEEECcCCcccCHHHHHHHHhhC
Confidence 888777877776654332 234555 89999986554 6899999776664 45455555543
No 102
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=61.44 E-value=24 Score=32.85 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=35.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
..+|..+++|.+||+.+ ++.|+|.|.|.|=.+++++++.+.+
T Consensus 182 ~~~Igvev~s~eea~~A---~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 182 TLKIEVEVETLEQLKEA---LEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred CCeEEEEECCHHHHHHH---HHcCCCEEEECCcCHHHHHHHHHHc
Confidence 34799999999998766 4789999999999999988877765
No 103
>PRK15447 putative protease; Provisional
Probab=61.18 E-value=42 Score=31.54 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=72.0
Q ss_pred Ee-CchhHHHHHH-HhCCcEEEEcCcchhhhhhccceeeeeeeee-cCCccccCCCCeEEEEE-Ee-cChhhhhhhcccc
Q 024251 56 WT-ESKQVMTAAV-ERGWNTFVFLSENQQLAIDWSTIALLDPLFI-KEGEVYDSGDRRVGSII-EV-STPQELQQLQPAD 130 (270)
Q Consensus 56 w~-~~Ke~vT~AL-EsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~-~~g~~~~~~gk~v~~~v-~V-~~~ed~e~~~~~~ 130 (270)
|- .+.+-+-+|+ ++|+|+|.+..+. ..... . ++.--+ +.-+.+...||++.+.. .| ..+++++.+....
T Consensus 12 ~p~~~~~~~~~~~~~~gaDaVY~g~~~--~~~R~-~---f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l 85 (301)
T PRK15447 12 WPKETVRDFYQRAADSPVDIVYLGETV--CSKRR-E---LKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLV 85 (301)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEECCcc--CCCcc-C---CCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHH
Confidence 54 4778888888 6699999997421 00000 0 000000 11133456677765544 44 3355666665544
Q ss_pred CCC-ceEEEeCCCCeeechhhhhhcccCCCceEEEE----cCCHHHHHHHHHHHhcccCeEEEecC-CHHHHHHHHHhh
Q 024251 131 GQA-ENIVIDLPDWQVIPAENIVASFQGSGKTVFAI----SKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALKEYF 203 (270)
Q Consensus 131 ~~~-~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~----v~~~~eA~~~l~~LE~G~DGVvl~~~-d~~~v~~l~~~~ 203 (270)
... +.|+ ..||..+- ++.+. +..+.+. +-|..-++.+ .+.|+++|+++++ +..||+++.+..
T Consensus 86 ~~~~~~v~--v~d~g~l~---~~~e~---~~~l~~d~~lni~N~~a~~~l---~~~G~~rv~ls~ELsl~eI~~i~~~~ 153 (301)
T PRK15447 86 ENGEFLVE--ANDLGAVR---LLAER---GLPFVAGPALNCYNAATLALL---ARLGATRWCMPVELSRDWLANLLAQC 153 (301)
T ss_pred hcCCCEEE--EeCHHHHH---HHHhc---CCCEEEecccccCCHHHHHHH---HHcCCcEEEECCcCCHHHHHHHHHhc
Confidence 432 3233 45666552 22221 2234332 3555555544 4579999999999 889998876543
No 104
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=60.94 E-value=48 Score=27.05 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=40.6
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~ 200 (270)
...+.++++..-...-.+ .++..++. ....++... +..+......+++.|++|.+.+|-+..++....
T Consensus 43 ~~~dlvild~~l~~~~g~-~~~~~i~~~~~~~~ii~lt-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i 112 (219)
T PRK10336 43 APYDAVILDLTLPGMDGR-DILREWREKGQREPVLILT-ARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 (219)
T ss_pred CCCCEEEEECCCCCCCHH-HHHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHH
Confidence 346788886543322122 22222222 234555544 444555667889999999999999988775443
No 105
>PRK09206 pyruvate kinase; Provisional
Probab=60.38 E-value=32 Score=34.99 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=85.6
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeEEEEEEecChhhhhhhccccCCCce
Q 024251 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
.||+-+.-|++-|+|.+-..- .+++.++++.++ +... +..+.++.+|.+++-++.+-.-+...|-
T Consensus 173 kD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 173 KDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREH-------------LKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 578889999999999654432 123444444333 2222 2467788999999988887776666888
Q ss_pred EEEeCCC-Ceeechhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecCC----
Q 024251 136 IVIDLPD-WQVIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (270)
Q Consensus 136 vvv~~~D-WtiIPlENlIA-------~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~d---- 192 (270)
++|--.| .-=+|.|.+.+ .+...+.-+|.. ..+-.|+--...+..-|+|||+|.-+.
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCC
Confidence 8884333 44567776654 222223333331 334478888889999999999996653
Q ss_pred -H-HHHHHHHHhhcc
Q 024251 193 -V-KAVLALKEYFDG 205 (270)
Q Consensus 193 -~-~~v~~l~~~~~~ 205 (270)
| +.|+-+.+++.+
T Consensus 320 yPveaV~~m~~I~~~ 334 (470)
T PRK09206 320 YPLEAVSIMATICER 334 (470)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3 446666666643
No 106
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=59.87 E-value=66 Score=28.50 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=44.7
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechh---hhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAE---NIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlE---NlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
...+.+++-..... ...+.+|++..|-.. |-. +++..+. ....+|+......++....-..++.|++|.+.++
T Consensus 22 ~~~~~~~~l~~~~~-~~pd~vl~dl~d~~m-p~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~ 99 (207)
T PRK11475 22 TFSSQSSFQDAMSR-ISFSAVIFSLSAMRS-ERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKA 99 (207)
T ss_pred EeCCHHHHHHHhcc-CCCCEEEeeccccCC-CCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecC
Confidence 34566654443322 235677754444222 111 1333332 3356777765554444444444589999999999
Q ss_pred CCHHHHHH
Q 024251 191 EDVKAVLA 198 (270)
Q Consensus 191 ~d~~~v~~ 198 (270)
.+++++.+
T Consensus 100 ~~~~eL~~ 107 (207)
T PRK11475 100 STLEILQQ 107 (207)
T ss_pred CCHHHHHH
Confidence 99987654
No 107
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=59.83 E-value=69 Score=29.28 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=66.0
Q ss_pred hHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec-ChhhhhhhccccCCCceEEE
Q 024251 61 QVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 61 e~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~-~~ed~e~~~~~~~~~~~vvv 138 (270)
.+..+|.+.|+.++=... +|...+++.-++-+|..+ +.+ .+..+ + .|+ +-++.+++.. ..++.+-+
T Consensus 3 ~mA~Aa~~gGA~giR~~~~~dI~aik~~v~lPIIGi~--K~~--y~~~~----V--~ITPT~~ev~~l~~--aGadIIAl 70 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANGVEDIRAIKKAVDLPIIGII--KRD--YPDSD----V--YITPTLKEVDALAE--AGADIIAL 70 (192)
T ss_dssp HHHHHHHHCT-SEEEEESHHHHHHHHTTB-S-EEEE---B-S--BTTSS--------BS-SHHHHHHHHH--CT-SEEEE
T ss_pred HHHHHHHHCCceEEEcCCHHHHHHHHHhcCCCEEEEE--ecc--CCCCC----e--EECCCHHHHHHHHH--cCCCEEEE
Confidence 356789999999988764 333334443344343321 111 11111 2 344 5666666665 46888888
Q ss_pred eCCC-CeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEE
Q 024251 139 DLPD-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (270)
Q Consensus 139 ~~~D-WtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVv 187 (270)
+.++ ..--+|+.++.+.+....-+.|-+++.|||+.+ .+.|+|=|-
T Consensus 71 DaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A---~~~G~D~I~ 117 (192)
T PF04131_consen 71 DATDRPRPETLEELIREIKEKYQLVMADISTLEEAINA---AELGFDIIG 117 (192)
T ss_dssp E-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHH---HHTT-SEEE
T ss_pred ecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHH---HHcCCCEEE
Confidence 8762 112889999999988888899999999998754 678988654
No 108
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.56 E-value=72 Score=28.95 Aligned_cols=122 Identities=7% Similarity=-0.014 Sum_probs=61.6
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhcccee---eeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccC
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA---LLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~---~~e~a~~l~~i~---~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~ 131 (270)
++-+-+...++.|++.+++... +.++.+++.+-- ++--|-..+|++.....+.- .=.++.++-......+
T Consensus 86 rs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~----~~~~~~~~~~~~~~~g 161 (234)
T PRK13587 86 RTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEED----TELNLFSFVRQLSDIP 161 (234)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCccc----CCCCHHHHHHHHHHcC
Confidence 6899999999999999999863 445555554321 11112223343221111100 0011222222212222
Q ss_pred CCceEEEeCCCC----e--eec-hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 132 QAENIVIDLPDW----Q--VIP-AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 132 ~~~~vvv~~~DW----t--iIP-lENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
...+|+..-+= + ..+ ++.+... .+..+++ .+.+.++.+.++ +.|++||++-+
T Consensus 162 -~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~---~~G~~~vivG~ 222 (234)
T PRK13587 162 -LGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLA---SLNVHAAIIGK 222 (234)
T ss_pred -CCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHH---HcCCCEEEEhH
Confidence 34455433221 1 122 3344332 2334554 479999999876 46999999854
No 109
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.54 E-value=76 Score=27.98 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=58.5
Q ss_pred eeeeeeecCCccccC-CCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCCee---echhhhhhccc-CCCceEE--E
Q 024251 92 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---IPAENIVASFQ-GSGKTVF--A 164 (270)
Q Consensus 92 ~i~~l~~~~g~~~~~-~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWti---IPlENlIA~~q-~~~~~i~--a 164 (270)
+|..|.+.+|..+.. +|++--..+...++.++-+.... ...+++.+...|=.. -..-++|.++- ..+..++ .
T Consensus 5 iip~idl~~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~-~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~G 83 (241)
T PRK13585 5 VIPAVDMKGGKCVQLVQGEPGTETVSYGDPVEVAKRWVD-AGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGG 83 (241)
T ss_pred EEEEEEeECCeEEEeeccccCCceEECCCHHHHHHHHHH-cCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcC
Confidence 455577788876653 23322223344566665554433 346677665554211 12222333221 1222333 3
Q ss_pred EcCCHHHHHHHHHHHhcccCeEEEecCC---HHHHHHHHHhh
Q 024251 165 ISKTPSEAQIFLEALEQGLGGIVLKVED---VKAVLALKEYF 203 (270)
Q Consensus 165 ~v~~~~eA~~~l~~LE~G~DGVvl~~~d---~~~v~~l~~~~ 203 (270)
.+++.++++.++. .|+|+|++.+.. ++.+.++.+.+
T Consensus 84 Gi~~~~~~~~~~~---~Ga~~v~iGs~~~~~~~~~~~i~~~~ 122 (241)
T PRK13585 84 GIRSAEDAASLLD---LGVDRVILGTAAVENPEIVRELSEEF 122 (241)
T ss_pred CcCCHHHHHHHHH---cCCCEEEEChHHhhChHHHHHHHHHh
Confidence 5689999998875 799999999854 44455544443
No 110
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.54 E-value=74 Score=29.19 Aligned_cols=131 Identities=18% Similarity=0.046 Sum_probs=67.4
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcC---cchhhhhhcccee-ee-eeeeecCCccccCCCCeEEEEEEec--Chhhh
Q 024251 53 VWIWT--ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIA-LL-DPLFIKEGEVYDSGDRRVGSIIEVS--TPQEL 123 (270)
Q Consensus 53 vWiw~--~~Ke~vT~ALEsG~d~~vv~~---~~~e~a~~l~~i~-~i-~~l~~~~g~~~~~~gk~v~~~v~V~--~~ed~ 123 (270)
+|+-- ++.+-+...|+.|++.+++.. ++.++.+++.+.+ .+ --|-.++|+.+..... +-+ ++.++
T Consensus 76 v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~------~~~~~~~~e~ 149 (241)
T PRK14114 76 IQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWL------AEEEIDPVSL 149 (241)
T ss_pred EEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCe------ecCCCCHHHH
Confidence 55533 578999999999999999886 4566666664321 11 1122244433321111 111 12221
Q ss_pred hhhccccCCCceEEEeCC--C--CeeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHH--Hhcc-cCeEEEec
Q 024251 124 QQLQPADGQAENIVIDLP--D--WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEA--LEQG-LGGIVLKV 190 (270)
Q Consensus 124 e~~~~~~~~~~~vvv~~~--D--WtiIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~--LE~G-~DGVvl~~ 190 (270)
-...... ....+|+..- | -+=+.+|.+-.-.+..+..|++ .+.+.+|-+.+... +..| ++|+++..
T Consensus 150 ~~~~~~~-g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~ 224 (241)
T PRK14114 150 LKRLKEY-GLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGR 224 (241)
T ss_pred HHHHHhc-CCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEeh
Confidence 1111111 2345555321 1 1223444332222223446665 48999998877653 2457 99999864
No 111
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=59.28 E-value=75 Score=27.27 Aligned_cols=91 Identities=13% Similarity=0.027 Sum_probs=53.8
Q ss_pred eEEEEEEecChh--hhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHH-HHHHHHHHhcccCeE
Q 024251 110 RVGSIIEVSTPQ--ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSE-AQIFLEALEQGLGGI 186 (270)
Q Consensus 110 ~v~~~v~V~~~e--d~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~e-A~~~l~~LE~G~DGV 186 (270)
.+..-..+.++. +.+++.. ..++++++.+..-. .=++.++..++..+.+++..+.++.+ ...+..+++.|+|-|
T Consensus 54 ~i~~d~k~~d~~~~~~~~~~~--~Gad~i~vh~~~~~-~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v 130 (206)
T TIGR03128 54 KVLADLKTMDAGEYEAEQAFA--AGADIVTVLGVADD-ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYI 130 (206)
T ss_pred EEEEEEeeccchHHHHHHHHH--cCCCEEEEeccCCH-HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEE
Confidence 344444455665 3334332 45788888776421 11367788888888888887655422 233344467799999
Q ss_pred EEecC---------CHHHHHHHHHhh
Q 024251 187 VLKVE---------DVKAVLALKEYF 203 (270)
Q Consensus 187 vl~~~---------d~~~v~~l~~~~ 203 (270)
-+.|. .+..++++++.+
T Consensus 131 ~~~pg~~~~~~~~~~~~~i~~l~~~~ 156 (206)
T TIGR03128 131 GVHTGLDEQAKGQNPFEDLQTILKLV 156 (206)
T ss_pred EEcCCcCcccCCCCCHHHHHHHHHhc
Confidence 88763 345566666654
No 112
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=58.88 E-value=43 Score=30.92 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=62.8
Q ss_pred hCCcEEEEcC----cc--------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEe----cChhhhhhhccccC-
Q 024251 69 RGWNTFVFLS----EN--------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV----STPQELQQLQPADG- 131 (270)
Q Consensus 69 sG~d~~vv~~----~~--------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V----~~~ed~e~~~~~~~- 131 (270)
-|+|+++|++ .| .+-+..++++. .-.+..|.++-..|..++...+. .+++|+...+...+
T Consensus 70 ~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~---~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~ 146 (223)
T TIGR01768 70 RDADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIG---EEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEE 146 (223)
T ss_pred cCCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhc---ceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHH
Confidence 5688888875 12 22333344332 11122344433334445444332 34555554433332
Q ss_pred --CCceEEEeCC-C-Ceeechhhhhhccc---CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 132 --QAENIVIDLP-D-WQVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 132 --~~~~vvv~~~-D-WtiIPlENlIA~~q---~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+-+.+-++.. . -.-+|.|.+=+-.+ +..--+-..++|.++|+.++ +.|+|+|++-+-
T Consensus 147 ~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~---~aGAD~VVVGs~ 210 (223)
T TIGR01768 147 MLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA---EAGADTIVTGNV 210 (223)
T ss_pred HcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH---HcCCCEEEECcH
Confidence 3578888854 2 34466665422211 23334456789999998865 569999999874
No 113
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=58.37 E-value=68 Score=33.00 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=65.5
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
+.+...-.+.|.+.++++.+ .+.++++.+. |.+ .++...++++-++++-. .+++.+|+.
T Consensus 413 ~~va~~L~~~g~~vvvID~d-~~~v~~~~~~-----------------g~~-v~~GDat~~~~L~~agi--~~A~~vv~~ 471 (601)
T PRK03659 413 QVIGRLLMANKMRITVLERD-ISAVNLMRKY-----------------GYK-VYYGDATQLELLRAAGA--EKAEAIVIT 471 (601)
T ss_pred HHHHHHHHhCCCCEEEEECC-HHHHHHHHhC-----------------CCe-EEEeeCCCHHHHHhcCC--ccCCEEEEE
Confidence 44455545678988887764 5556554432 222 35666677776666543 367788887
Q ss_pred CCCCeeechhhhhh----cccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 140 LPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 140 ~~DWtiIPlENlIA----~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
..|. -+|+.. +-...+.+|++.++|.++++.+.. .|+|-|+-.
T Consensus 472 ~~d~----~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~---~Ga~~vv~e 518 (601)
T PRK03659 472 CNEP----EDTMKIVELCQQHFPHLHILARARGRVEAHELLQ---AGVTQFSRE 518 (601)
T ss_pred eCCH----HHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHh---CCCCEEEcc
Confidence 7775 344322 222456799999999999987754 699988743
No 114
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=58.14 E-value=1e+02 Score=28.07 Aligned_cols=118 Identities=11% Similarity=0.108 Sum_probs=60.1
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhccc----eeeeeeeeecCCccccCCCCeEEEEEEe------c--Chhh
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWST----IALLDPLFIKEGEVYDSGDRRVGSIIEV------S--TPQE 122 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~---~~e~a~~l~~----i~~i~~l~~~~g~~~~~~gk~v~~~v~V------~--~~ed 122 (270)
++-+-+...++.|++.+++... +.++.+++.+ -.++-.+-+++|. .|. ..+.+ . ++.+
T Consensus 84 ~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~----~~~---~~v~~~gw~~~~~~~~~e 156 (258)
T PRK01033 84 KTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNL----GGK---FDVYTHNGTKKLKKDPLE 156 (258)
T ss_pred CCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCC----CCc---EEEEEcCCeecCCCCHHH
Confidence 3566677788999999998863 3444444432 1122222333330 111 11111 1 1222
Q ss_pred hhhhccccCCCceEEEeCC---------CCeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHHhcccCeEEEec
Q 024251 123 LQQLQPADGQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~---------DWtiIPlENlIA~~q~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
+-..... ...+.+++... ||..| +.+.. ..+..|++. +.++++++.+++ +.|+|||++..
T Consensus 157 ~~~~~~~-~g~~~ii~~~i~~~G~~~G~d~~~i--~~~~~---~~~ipvIasGGv~s~eD~~~l~~--~~GvdgVivg~ 227 (258)
T PRK01033 157 LAKEYEA-LGAGEILLNSIDRDGTMKGYDLELL--KSFRN---ALKIPLIALGGAGSLDDIVEAIL--NLGADAAAAGS 227 (258)
T ss_pred HHHHHHH-cCCCEEEEEccCCCCCcCCCCHHHH--HHHHh---hCCCCEEEeCCCCCHHHHHHHHH--HCCCCEEEEcc
Confidence 2222222 23566776533 34433 22222 234566654 889999887764 45999998754
No 115
>COG4697 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.89 E-value=8.9 Score=37.12 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=15.2
Q ss_pred EEEEEEEecccccee-----EEeccc
Q 024251 218 ATVTRVDVAGMGDRV-----CVDLCR 238 (270)
Q Consensus 218 a~Vt~V~~vGmGdRV-----CVDtcS 238 (270)
-.|-.+.-.|+|.|. ||||-|
T Consensus 176 ~~i~d~a~Fg~~~~~~p~v~~id~es 201 (319)
T COG4697 176 RDISDKATFGLLLRIDPGVPQIDTES 201 (319)
T ss_pred ceeeeeeeeeeecccCCCceeEeecc
Confidence 346666677777764 999988
No 116
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=57.81 E-value=38 Score=28.94 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=60.3
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---hhh---hhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN---QQL---AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~---~e~---a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~ 132 (270)
-.+.+..+++.|++.+.++..+ .++ ++++..+.. +.+. .+-|.+.-++ +.. .+
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~-------------~~~~----~liin~~~~l---a~~-~~ 72 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQ-------------KYGV----PLIINDRVDL---ALE-LG 72 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHH-------------HTTG----CEEEES-HHH---HHH-CT
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhh-------------cceE----EEEecCCHHH---HHh-cC
Confidence 4688999999999999998743 333 333333311 1111 1233343222 111 34
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
++-+=+...|. |....-..+ +....|-+.+.|.+|++.+ .+.|+|=|.|.|=
T Consensus 73 ~dGvHl~~~~~---~~~~~r~~~-~~~~~ig~S~h~~~e~~~a---~~~g~dYv~~gpv 124 (180)
T PF02581_consen 73 ADGVHLGQSDL---PPAEARKLL-GPDKIIGASCHSLEEAREA---EELGADYVFLGPV 124 (180)
T ss_dssp -SEEEEBTTSS---SHHHHHHHH-TTTSEEEEEESSHHHHHHH---HHCTTSEEEEETS
T ss_pred CCEEEeccccc---chHHhhhhc-ccceEEEeecCcHHHHHHh---hhcCCCEEEECCc
Confidence 56677766665 444443333 2345788899999996554 4899999999774
No 117
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=57.74 E-value=1e+02 Score=29.42 Aligned_cols=116 Identities=16% Similarity=0.267 Sum_probs=77.6
Q ss_pred chhHHHHHHHhC-CcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVERG-WNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEsG-~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
.-|++.+||.+| .|+.|.--|-+ | +++..+.+++.+-|-++--+++-+ |= +++....++..-+|
T Consensus 77 aSEil~t~l~~g~iDaaV~vcdGA------G------TVI~~~P~lVQGiGGrmSGLv~T~-PI--~evi~~Ie~~ggiV 141 (258)
T PF09872_consen 77 ASEILMTALRRGLIDAAVIVCDGA------G------TVITTNPELVQGIGGRMSGLVSTT-PI--PEVIERIEEKGGIV 141 (258)
T ss_pred HHHHHHHHHhcCCcceEEEEecCC------C------eEEeCCHHHHhhccceeeeeeecc-ch--HHHHHHHHhcCCEE
Confidence 479999999999 67655443211 1 223445566665555544443322 22 23333344556789
Q ss_pred EeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHh--cccCeEEEec
Q 024251 138 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE--QGLGGIVLKV 190 (270)
Q Consensus 138 v~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE--~G~DGVvl~~ 190 (270)
++-.+-+|=|++-+.-++..--.+|...+.++++|+..-+ || .|++-+++..
T Consensus 142 Ld~~tA~IDq~~Gv~kAie~Gyk~IaVTV~~~~~A~~iRe-le~~~~~~~~if~V 195 (258)
T PF09872_consen 142 LDPETARIDQVEGVKKAIEMGYKRIAVTVADAEDAKKIRE-LEKEEGVNIYIFGV 195 (258)
T ss_pred eCCccccccHHHHHHHHHHcCCceEEEEecCHHHHHHHHH-hhccCCCceEEEEE
Confidence 9888999999999988877667799999999999887544 54 5888777653
No 118
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=57.62 E-value=27 Score=32.44 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=36.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
...|..++.|++||+.++ +.|+|.|+|.+=.+++++++.+.+
T Consensus 181 ~~~I~vev~t~eea~~A~---~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 181 EKKIEVEVETLEEAEEAL---EAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred CCeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHh
Confidence 357999999999988775 579999999999999988877765
No 119
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=57.37 E-value=71 Score=28.94 Aligned_cols=122 Identities=24% Similarity=0.195 Sum_probs=80.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
-.+++.+.++.|+..+=++-.+.+-.+.+..+..- .+ +..+| -..|.++++.+.+... .++++|-
T Consensus 22 a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~----------~~--~~~vG-AGTVl~~~~a~~a~~a--GA~Fivs 86 (204)
T TIGR01182 22 ALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKE----------VP--DALIG-AGTVLNPEQLRQAVDA--GAQFIVS 86 (204)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHH----------CC--CCEEE-EEeCCCHHHHHHHHHc--CCCEEEC
Confidence 46889999999999887775432221212222110 01 12233 3478999998877764 4566654
Q ss_pred eCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC----HHHHHHHHHhhc
Q 024251 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYFD 204 (270)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d----~~~v~~l~~~~~ 204 (270)
-..+ +.++...+..+.-.+-.+.++.|+. .+++.|+|-|=+-|-+ ++-++.|+..+-
T Consensus 87 P~~~------~~v~~~~~~~~i~~iPG~~TptEi~---~A~~~Ga~~vKlFPA~~~GG~~yikal~~plp 147 (204)
T TIGR01182 87 PGLT------PELAKHAQDHGIPIIPGVATPSEIM---LALELGITALKLFPAEVSGGVKMLKALAGPFP 147 (204)
T ss_pred CCCC------HHHHHHHHHcCCcEECCCCCHHHHH---HHHHCCCCEEEECCchhcCCHHHHHHHhccCC
Confidence 3332 3777777777888999999999976 5678999999988876 566777777663
No 120
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=57.32 E-value=45 Score=29.40 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=64.6
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch------hhhhhccceeee--eeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALL--DPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~~------e~a~~l~~i~~i--~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
+--+++..+.+.|++.+.+.+-+. +....+.++..- -|+.+.+| |.+.++.+.+..
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GG---------------i~~~~~~~~~~~- 96 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGG---------------IRSAEDAASLLD- 96 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCC---------------cCCHHHHHHHHH-
Confidence 457889999999999877764321 111122222111 12333222 477888777664
Q ss_pred cCCCceEEEeCCCCeee-chhhhhhcccCCCceEEEEcC---------------CHHHHHHHHHHHhcccCeEEEecC
Q 024251 130 DGQAENIVIDLPDWQVI-PAENIVASFQGSGKTVFAISK---------------TPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 130 ~~~~~~vvv~~~DWtiI-PlENlIA~~q~~~~~i~a~v~---------------~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..++.+++.....+-. +++.+...+.. .+|+..+. +.+-...+....+.|++.|++...
T Consensus 97 -~Ga~~v~iGs~~~~~~~~~~~i~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~ 171 (241)
T PRK13585 97 -LGVDRVILGTAAVENPEIVRELSEEFGS--ERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNV 171 (241)
T ss_pred -cCCCEEEEChHHhhChHHHHHHHHHhCC--CcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEee
Confidence 3567888855443322 35677666542 24554432 112233444457899999998664
No 121
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=57.30 E-value=78 Score=27.57 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=53.8
Q ss_pred eeeeeecCCccccCC-CCeEEEEEEecChhhhhhhccccCCCceEEEeCCC-Cee---echhhhhhccc---CCCceEEE
Q 024251 93 LDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPD-WQV---IPAENIVASFQ---GSGKTVFA 164 (270)
Q Consensus 93 i~~l~~~~g~~~~~~-gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~D-Wti---IPlENlIA~~q---~~~~~i~a 164 (270)
|..|.+.||..+... |.+--......++.++-+.... ...+.+.|...+ +.- .-.+ +++++- +-..-+-.
T Consensus 3 ip~idl~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~-~g~d~l~v~dl~~~~~~~~~~~~-~i~~i~~~~~~pv~~~G 80 (234)
T cd04732 3 IPAIDLKDGKCVRLYQGDYDKKTVYSDDPVEVAKKWEE-AGAKWLHVVDLDGAKGGEPVNLE-LIEEIVKAVGIPVQVGG 80 (234)
T ss_pred EEEEEeECCEEEEeecccCCCCeEECCCHHHHHHHHHH-cCCCEEEEECCCccccCCCCCHH-HHHHHHHhcCCCEEEeC
Confidence 444667788766533 2221122344566655444433 234555553322 200 0111 222221 22334455
Q ss_pred EcCCHHHHHHHHHHHhcccCeEEEecC---CHHHHHHHHH
Q 024251 165 ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKE 201 (270)
Q Consensus 165 ~v~~~~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~~ 201 (270)
.++++++|+.++. .|+|.|++... |++.++++.+
T Consensus 81 gI~~~e~~~~~~~---~Gad~vvigs~~l~dp~~~~~i~~ 117 (234)
T cd04732 81 GIRSLEDIERLLD---LGVSRVIIGTAAVKNPELVKELLK 117 (234)
T ss_pred CcCCHHHHHHHHH---cCCCEEEECchHHhChHHHHHHHH
Confidence 7889999887774 79999999886 4444444433
No 122
>PRK06354 pyruvate kinase; Provisional
Probab=57.25 E-value=36 Score=35.50 Aligned_cols=124 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccc-cCCCCeEEEEEEecChhhhhhhccccCCCc
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVY-DSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~-~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
++|++.+.-|++-|+|.+-+.- .+++.++++.++ + ...|+.+.++.+|.+++.++.+-.-....|
T Consensus 178 ekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeI~~~~D 244 (590)
T PRK06354 178 EKDREDLIFGLEQGVDWIALSFVRNPSDVLEIREL-------------IEEHNGKHIPIIAKIEKQEAIDNIDAILELCD 244 (590)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHhcCCCceEEEEECCHHHHHhHHHHHHhcC
Q ss_pred eEEE-eCCCCeeechhh-------hhhcccCCCceEEE-----------EcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 135 NIVI-DLPDWQVIPAEN-------IVASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 135 ~vvv-~~~DWtiIPlEN-------lIA~~q~~~~~i~a-----------~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
-++| .+.-.--+|.|. +|..+...+.-+|. ...+-.|+--...+..-|+|+|+|.-+..
T Consensus 245 gImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA 322 (590)
T PRK06354 245 GLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETA 322 (590)
T ss_pred EEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEeccccc
No 123
>PRK09483 response regulator; Provisional
Probab=56.94 E-value=85 Score=25.70 Aligned_cols=81 Identities=9% Similarity=0.121 Sum_probs=44.2
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++...... ....+.++++......=-+ .++..++ .....++..... .+......+++.|++|.+.+|.+.
T Consensus 32 ~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~-~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~k~~~~ 108 (217)
T PRK09483 32 EACCGEDAVKWCR-TNAVDVVLMDMNMPGIGGL-EATRKILRYTPDVKIIMLTVH-TENPLPAKVMQAGAAGYLSKGAAP 108 (217)
T ss_pred EeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHH-HHHHHHHHHCCCCeEEEEeCC-CCHHHHHHHHHcCCCEEEeCCCCH
Confidence 3455554333222 2346788885432221111 2332222 223455555433 444555688999999999999988
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 109 ~~l~~~ 114 (217)
T PRK09483 109 QEVVSA 114 (217)
T ss_pred HHHHHH
Confidence 766543
No 124
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=56.79 E-value=18 Score=32.11 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=27.2
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
+..+.+++|+ .+.+.+..+++.|+|+|+.+.
T Consensus 210 ~~G~~v~vWTVN~~~~~~~l~~~gVdgIiTD~ 241 (249)
T cd08561 210 AAGLEVHVWTVNDPAEMRRLLDLGVDGIITDR 241 (249)
T ss_pred HCCCEEEEEecCCHHHHHHHHhcCCCEEEcCC
Confidence 4678899999 679999999999999999765
No 125
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=56.79 E-value=29 Score=32.40 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=34.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
..|..++.|.+||..+ ++.|+|.|.|.+=++.+++++.+.+
T Consensus 184 ~~IgVev~t~eea~~A---~~~gaD~I~ld~~~p~~l~~~~~~~ 224 (272)
T cd01573 184 KKIVVEVDSLEEALAA---AEAGADILQLDKFSPEELAELVPKL 224 (272)
T ss_pred CeEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHH
Confidence 4688999999998876 4799999999999998887766655
No 126
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=56.77 E-value=58 Score=30.60 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=83.2
Q ss_pred EEEEeC---chhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccCCCCeEEEEEEecChh
Q 024251 53 VWIWTE---SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQ 121 (270)
Q Consensus 53 vWiw~~---~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~--~l~~~~g~~~~~~gk~v~~~v~V~~~e 121 (270)
|.+-.+ +.+.+..|++.|++.++++.-+ .++.+++-.+..-. .+-.+=|.+-..++..++.-...+++|
T Consensus 77 v~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~e 156 (282)
T TIGR01859 77 VALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPD 156 (282)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHH
Confidence 666544 7899999999999999998543 23333333221110 111111110001111111012357888
Q ss_pred hhhhhccccCCCceEEEe-------CCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC-H
Q 024251 122 ELQQLQPADGQAENIVID-------LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED-V 193 (270)
Q Consensus 122 d~e~~~~~~~~~~~vvv~-------~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d-~ 193 (270)
+..++.... ..|++.+. +.....+.+|.|-.--+..+.-|++.=.|--....+-.+.+.|+++|-+.|+= .
T Consensus 157 ea~~f~~~t-gvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 157 EAEQFVKET-GVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred HHHHHHHHH-CcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHH
Confidence 877766532 57888853 33445577776633322234456666544433445677788999999999983 3
Q ss_pred HHHHHHHHhh
Q 024251 194 KAVLALKEYF 203 (270)
Q Consensus 194 ~~v~~l~~~~ 203 (270)
.-...+++++
T Consensus 236 a~~~~~~~~~ 245 (282)
T TIGR01859 236 AFTAAIRKVL 245 (282)
T ss_pred HHHHHHHHHH
Confidence 4455556655
No 127
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=56.74 E-value=53 Score=26.97 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=40.4
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++..-+..-.++ ++..++. ....++... +..+......+++.|+++.+.+|-++.++.+.
T Consensus 43 ~~~dlvi~d~~~~~~~g~~-~~~~l~~~~~~~ii~ls-~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~ 110 (223)
T PRK11517 43 DDYALIILDIMLPGMDGWQ-ILQTLRTAKQTPVICLT-ARDSVDDRVRGLDSGANDYLVKPFSFSELLAR 110 (223)
T ss_pred CCCCEEEEECCCCCCCHHH-HHHHHHcCCCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHH
Confidence 3467888865433322222 2222221 134455544 34455667899999999999999998876543
No 128
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=56.62 E-value=34 Score=34.83 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=43.5
Q ss_pred hhhhhhhcccc-CCCceEEEeCCCCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 120 PQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 120 ~ed~e~~~~~~-~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
+++++++.... ..+|.++++..+=.-+=.-++|..+... +..|++ .+.++++|+.+. +.|+|+|.+.
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~---~aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLI---QAGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHH---HcCcCEEEEC
Confidence 55556655544 3589999988753322222445544432 356655 699999988776 5899999873
No 129
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=56.57 E-value=16 Score=32.99 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=26.7
Q ss_pred CCCcEEEEEe-----CchhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-----ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-----~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
...+.+|+|+ .+++.+...++.|+|+++.+.
T Consensus 221 ~~Gl~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~ 256 (265)
T cd08564 221 ENGLKVMTYFDEPVNDNEEDYKVYLELGVDCICPND 256 (265)
T ss_pred HcCCEEEEecCCCCCCCHHHHHHHHHcCCCEEEcCC
Confidence 4677899997 568999999999999999765
No 130
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=56.11 E-value=99 Score=27.88 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=66.5
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhcccee--ee-eeeeecCCccccCCCCeEEEEEEecChhhhhhhccccC
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA--LL-DPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~---~~e~a~~l~~i~--~i-~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~ 131 (270)
++.+-+..+|+.|++.+++... +.++++++.+-- .+ -.+-++++...- .| ..-...++.++-..... .
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~-~G----w~~~~~~~~~~~~~l~~-~ 158 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAA-RG----WTRDGGDLWEVLERLDS-A 158 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEecc-CC----eeecCccHHHHHHHHHh-c
Confidence 5899999999999999998763 455565554321 11 111223332211 12 11011122222121111 2
Q ss_pred CCceEEEeCC---------CCeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 132 QAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 132 ~~~~vvv~~~---------DWtiIPlENlIA~~q~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..+.+++... ||..| +.+.. .....|++. +.+++|++.+....+.|+|||++..-
T Consensus 159 G~~~iiv~~~~~~g~~~G~d~~~i--~~i~~---~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 159 GCSRYVVTDVTKDGTLTGPNLELL--REVCA---RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred CCCEEEEEeecCCCCccCCCHHHH--HHHHh---hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 3566666544 34433 22222 224456654 79999999887766789999998653
No 131
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=56.10 E-value=1e+02 Score=28.87 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~---------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
+.-.|-.|-+.|+|+++.--.- .+.+..+|-- +.++|.+.++++.+...
T Consensus 120 d~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle----------------------~lVEVh~~~El~~al~~ 177 (254)
T PF00218_consen 120 DPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLE----------------------ALVEVHNEEELERALEA 177 (254)
T ss_dssp SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-E----------------------EEEEESSHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCC----------------------eEEEECCHHHHHHHHHc
Q ss_pred cCCCceEEEeCCCCeeech-----hhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 130 DGQAENIVIDLPDWQVIPA-----ENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 130 ~~~~~~vvv~~~DWtiIPl-----ENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
..+.+-|+-+|-+.--. +.|...+... .++..-+-....+-+....+.|+|||++
T Consensus 178 --~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~--~~~iseSGI~~~~d~~~l~~~G~davLV 237 (254)
T PF00218_consen 178 --GADIIGINNRDLKTFEVDLNRTEELAPLIPKD--VIVISESGIKTPEDARRLARAGADAVLV 237 (254)
T ss_dssp --T-SEEEEESBCTTTCCBHTHHHHHHHCHSHTT--SEEEEESS-SSHHHHHHHCTTT-SEEEE
T ss_pred --CCCEEEEeCccccCcccChHHHHHHHhhCccc--eeEEeecCCCCHHHHHHHHHCCCCEEEE
No 132
>PRK13856 two-component response regulator VirG; Provisional
Probab=56.04 E-value=99 Score=26.31 Aligned_cols=68 Identities=26% Similarity=0.189 Sum_probs=39.6
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++..-...=.++ ++..+.. ....++.......+......+++.|+|+++.+|-++.++.+.
T Consensus 44 ~~~dlvi~d~~l~~~~g~~-l~~~i~~~~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~ 112 (241)
T PRK13856 44 ETVDVVVVDLNLGREDGLE-IVRSLATKSDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLAR 112 (241)
T ss_pred CCCCEEEEeCCCCCCCHHH-HHHHHHhcCCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHH
Confidence 3467788854433221122 2333321 234455555433334445688999999999999999876543
No 133
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=55.94 E-value=17 Score=31.51 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=25.8
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~ 77 (270)
+.-+++|+|| .+++.+..++..|+|+|+.+
T Consensus 197 ~~g~~v~~wTvn~~~~~~~~~~~gVdgiiTD 227 (229)
T cd08562 197 DAGYKLLVYTVNDPARAAELLEWGVDAIFTD 227 (229)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHCCCCEEEcC
Confidence 4567899999 57999999999999999865
No 134
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=55.86 E-value=1.3e+02 Score=27.28 Aligned_cols=128 Identities=14% Similarity=0.033 Sum_probs=62.2
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhccce----eeeeeeeecCCccccCCCCeEEEEEEe-cChhhhhhhccc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPA 129 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~---~~e~a~~l~~i----~~i~~l~~~~g~~~~~~gk~v~~~v~V-~~~ed~e~~~~~ 129 (270)
++.+-+..+++.|++.+++... +.+..+++.+- .++--|-+.+|.+.....-++.++.-- .+.++...++..
T Consensus 84 ~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~ 163 (254)
T TIGR00735 84 KSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKE 163 (254)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHH
Confidence 5789999999999999998763 34555554321 122112223443221111122222111 122232333322
Q ss_pred c--CCCceEEEeCCCC----eeec---hhhhhhcccCCCceEEEE--cCCHHHHHHHHHHHhcc-cCeEEEecC
Q 024251 130 D--GQAENIVIDLPDW----QVIP---AENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQG-LGGIVLKVE 191 (270)
Q Consensus 130 ~--~~~~~vvv~~~DW----tiIP---lENlIA~~q~~~~~i~a~--v~~~~eA~~~l~~LE~G-~DGVvl~~~ 191 (270)
. ...+.+++...+= +-.. +..+... .+..|++. +.++++++ ++++.| +|||++..-
T Consensus 164 l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~---~~ipvia~GGi~s~~di~---~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 164 VEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEA---VKIPVIASGGAGKPEHFY---EAFTKGKADAALAASV 231 (254)
T ss_pred HHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHH---HHHHcCCcceeeEhHH
Confidence 2 2356777743211 0111 2233322 23445543 68888877 455657 999988443
No 135
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=55.15 E-value=16 Score=33.26 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=27.1
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.....+++|| .+.+.|...++.|+|+|+.+..
T Consensus 229 ~~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P 261 (264)
T cd08575 229 KRGIQVYLWVLNDEEDFEEAFDLGADGVMTDSP 261 (264)
T ss_pred hcCCcEEEEEECCHHHHHHHHhcCCCEEEeCCc
Confidence 3567799999 5699999999999999998753
No 136
>PRK04302 triosephosphate isomerase; Provisional
Probab=55.15 E-value=1.1e+02 Score=27.10 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=19.4
Q ss_pred ceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 160 KTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 160 ~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
..|++ .++++++++. +++.|+|||++-+
T Consensus 174 ~pvi~GggI~~~e~~~~---~~~~gadGvlVGs 203 (223)
T PRK04302 174 VKVLCGAGISTGEDVKA---ALELGADGVLLAS 203 (223)
T ss_pred CEEEEECCCCCHHHHHH---HHcCCCCEEEEeh
Confidence 45554 4566666665 5789999998754
No 137
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=54.69 E-value=6 Score=36.92 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.9
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN 80 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~ 80 (270)
+..+++..|-+.|+..+++...+
T Consensus 18 d~~~vi~~a~~~gv~~~~~~g~~ 40 (256)
T COG0084 18 DRDEVIARAREAGVKKMVVVGTD 40 (256)
T ss_pred CHHHHHHHHHHcCCcEEEEeecC
Confidence 45789999999999998887644
No 138
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=54.23 E-value=18 Score=32.45 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.4
Q ss_pred CcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 50 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 50 ~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+.+++|| .+++.|..+++.|+|+++.+..
T Consensus 201 g~~v~~WTVn~~~~~~~l~~~GVdgIiTD~P 231 (235)
T cd08565 201 GLRLGVWTVNDDSLIRYWLACGVRQLTTDRP 231 (235)
T ss_pred CCEEEEEccCCHHHHHHHHHcCCCEEEeCCc
Confidence 67899999 5799999999999999997653
No 139
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=54.13 E-value=57 Score=32.93 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=44.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccC--eEEEecCC-
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG--GIVLKVED- 192 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~D--GVvl~~~d- 192 (270)
=|.+++|+..+.. + .+-++|-..-.+-=-+...+.++.... -=|+...+++||+.+.+ .|+| |+++.|.+
T Consensus 218 GI~t~~d~~~~~~--~-~davLiG~~lm~~~d~~~~~~~L~~~~-vKICGit~~eda~~a~~---~GaD~lGfIf~~~Sp 290 (454)
T PRK09427 218 GIYTHAQVRELSP--F-ANGFLIGSSLMAEDDLELAVRKLILGE-NKVCGLTRPQDAKAAYD---AGAVYGGLIFVEKSP 290 (454)
T ss_pred CCCCHHHHHHHHh--c-CCEEEECHHHcCCCCHHHHHHHHhccc-cccCCCCCHHHHHHHHh---CCCCEEeeEeCCCCC
Confidence 4678999888743 3 777877433333222233333332222 23577888888877654 5776 66664432
Q ss_pred ----HHHHHHHHH
Q 024251 193 ----VKAVLALKE 201 (270)
Q Consensus 193 ----~~~v~~l~~ 201 (270)
+++++++.+
T Consensus 291 R~V~~~~a~~i~~ 303 (454)
T PRK09427 291 RYVSLEQAQEIIA 303 (454)
T ss_pred CCCCHHHHHHHHH
Confidence 455555544
No 140
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=54.13 E-value=38 Score=28.83 Aligned_cols=105 Identities=16% Similarity=0.117 Sum_probs=56.6
Q ss_pred hhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~---~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
.+.+..+++.|++.|.++..+ .+..+.+.++..+ ...-|.. .+ +. ++.+.+.. .+++.+
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~----------~~~~~~~--l~--~~--~~~~~a~~--~gad~v 85 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKEL----------CRRYGVP--LI--VN--DRVDLALA--VGADGV 85 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHH----------HHHhCCe--EE--Ee--ChHHHHHH--cCCCEE
Confidence 467889999999999886432 2222222222111 0111211 11 22 33333332 245666
Q ss_pred EEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 137 vv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
.+...+ .|.+ .+..+.+.+..+-..+.|.+|++.+ .+.|+|-|.+.
T Consensus 86 h~~~~~---~~~~-~~~~~~~~~~~~g~~~~t~~e~~~a---~~~gaD~v~~~ 131 (212)
T PRK00043 86 HLGQDD---LPVA-DARALLGPDAIIGLSTHTLEEAAAA---LAAGADYVGVG 131 (212)
T ss_pred ecCccc---CCHH-HHHHHcCCCCEEEEeCCCHHHHHHH---hHcCCCEEEEC
Confidence 664433 3333 2344445566788888888887554 47899999874
No 141
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=53.60 E-value=1.1e+02 Score=26.86 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=52.7
Q ss_pred eeecCCccccC-CCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCC-eee--chhhhhhcccCCCc--eEEEEcCCH
Q 024251 96 LFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW-QVI--PAENIVASFQGSGK--TVFAISKTP 169 (270)
Q Consensus 96 l~~~~g~~~~~-~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DW-tiI--PlENlIA~~q~~~~--~i~a~v~~~ 169 (270)
|.+.+|..++. +|.+-.+...-.+|.++-..-...+-.+..|++-... +-. .++.+-.-.+.... .+=..+++.
T Consensus 5 id~~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ 84 (230)
T TIGR00007 5 IDIKDGKCVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSL 84 (230)
T ss_pred EEeeCCEEEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCH
Confidence 45567766642 2333223322346666555443333334445544333 122 23322221122222 333477889
Q ss_pred HHHHHHHHHHhcccCeEEEecC---CHHHHHHHHHh
Q 024251 170 SEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEY 202 (270)
Q Consensus 170 ~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~~~ 202 (270)
++++.+++ .|+|.|++.+. |++.+.++.+.
T Consensus 85 ed~~~~~~---~Ga~~vvlgs~~l~d~~~~~~~~~~ 117 (230)
T TIGR00007 85 EDVEKLLD---LGVDRVIIGTAAVENPDLVKELLKE 117 (230)
T ss_pred HHHHHHHH---cCCCEEEEChHHhhCHHHHHHHHHH
Confidence 99887766 79999999854 55555544443
No 142
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=53.34 E-value=84 Score=27.41 Aligned_cols=104 Identities=12% Similarity=0.086 Sum_probs=52.3
Q ss_pred eeeeeecCCcccc-CCCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCCe------eec-hhhhhhcccCCCceEEE
Q 024251 93 LDPLFIKEGEVYD-SGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ------VIP-AENIVASFQGSGKTVFA 164 (270)
Q Consensus 93 i~~l~~~~g~~~~-~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWt------iIP-lENlIA~~q~~~~~i~a 164 (270)
|..|.+.+|..++ -+|.+-.......++.++-..-... ..+.+.+...|=. .++ ++.+... -+-+..+-.
T Consensus 4 ip~iD~~~g~~v~~~~G~~~~~~~~~~~~~~~a~~~~~~-g~~~i~v~dld~~~~g~~~~~~~i~~i~~~-~~~pv~~~G 81 (233)
T PRK00748 4 IPAIDLKDGKCVRLYQGDYDQATVYSDDPVAQAKAWEDQ-GAKWLHLVDLDGAKAGKPVNLELIEAIVKA-VDIPVQVGG 81 (233)
T ss_pred EEEEEEECCeEEEccccccccceEecCCHHHHHHHHHHc-CCCEEEEEeCCccccCCcccHHHHHHHHHH-CCCCEEEcC
Confidence 3345667776664 2232222222234566544433332 3444444332221 122 2222222 122233445
Q ss_pred EcCCHHHHHHHHHHHhcccCeEEEecC---CHHHHHHHHH
Q 024251 165 ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKE 201 (270)
Q Consensus 165 ~v~~~~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~~ 201 (270)
.+++.++++.++. .|+|+|++... +++.++++.+
T Consensus 82 GI~~~ed~~~~~~---~Ga~~vilg~~~l~~~~~l~ei~~ 118 (233)
T PRK00748 82 GIRSLETVEALLD---AGVSRVIIGTAAVKNPELVKEACK 118 (233)
T ss_pred CcCCHHHHHHHHH---cCCCEEEECchHHhCHHHHHHHHH
Confidence 7899999987766 59999999986 4544544443
No 143
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=53.33 E-value=1.5e+02 Score=25.48 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.2
Q ss_pred HHHHHHHhCCcEEEEcCc
Q 024251 62 VMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 62 ~vT~ALEsG~d~~vv~~~ 79 (270)
.+..+.+.|+|.+.+..+
T Consensus 68 ~~~~~~~~Gad~i~vh~~ 85 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGV 85 (206)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 588899999999987764
No 144
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.15 E-value=1.1e+02 Score=27.53 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=59.5
Q ss_pred eeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCC----eeechhhhhhcccCCCc--eEEEEc
Q 024251 93 LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW----QVIPAENIVASFQGSGK--TVFAIS 166 (270)
Q Consensus 93 i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DW----tiIPlENlIA~~q~~~~--~i~a~v 166 (270)
|..|.+.+|..+...+. .......++.++-+.....+ ++.+.+...|- +-..++.+-.-.+..+. -+-..+
T Consensus 7 ip~idl~~g~~V~~~~~--~~~~~~~d~~~~a~~~~~~G-~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi 83 (253)
T PRK02083 7 IPCLDVKDGRVVKGVNF--VNLRDAGDPVELAKRYNEEG-ADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGI 83 (253)
T ss_pred EEEEEEECCEEEEeEEe--cceeecCCHHHHHHHHHHcC-CCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCC
Confidence 44467778876653321 11123456766666554433 45555544432 22333333111122223 344478
Q ss_pred CCHHHHHHHHHHHhcccCeEEEec---CCHHHHHHHHHhh
Q 024251 167 KTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 203 (270)
Q Consensus 167 ~~~~eA~~~l~~LE~G~DGVvl~~---~d~~~v~~l~~~~ 203 (270)
++.++++.++. .|+|+|++.+ .||+.+.++.+.+
T Consensus 84 ~s~~~~~~~l~---~Ga~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 84 RSVEDARRLLR---AGADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred CCHHHHHHHHH---cCCCEEEEChhHhhCcHHHHHHHHHc
Confidence 99999998876 6999999999 5777666665544
No 145
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=52.45 E-value=72 Score=29.64 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=61.5
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC-hhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~-~ed~e~~~~~~~~~~~vv 137 (270)
-++.+..+-|+|+|++++++=-.|..+++... .++.|-....++.-++ .+.++.++... .+++-
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~-------------~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY 170 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLPPEEAEELRAA-------------AKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVY 170 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEE
Confidence 46789999999999999985222333322211 1122322223222233 34445454442 23332
Q ss_pred E----eCCCCe-e--echhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 138 I----DLPDWQ-V--IPAENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 138 v----~~~DWt-i--IPlENlIA~~q~~-~~~i~--a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+ -.++.+ - -++++.+..+.+. +..|+ ..++++++++.+++ ++|||++-+.
T Consensus 171 ~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~----~ADGviVGSa 230 (258)
T PRK13111 171 YVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA----VADGVIVGSA 230 (258)
T ss_pred EEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH----hCCEEEEcHH
Confidence 1 113332 2 2366666666543 33333 45678899888663 4999999874
No 146
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=52.14 E-value=20 Score=32.22 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=27.7
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+.+++++|| .+.+.+...++.|+|+|+.+..
T Consensus 207 ~~g~~v~~WTvn~~~~~~~l~~~GVdgIiTD~p 239 (249)
T PRK09454 207 AAGLRILVYTVNDPARARELLRWGVDCICTDRI 239 (249)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCCh
Confidence 5678899999 5799999999999999998753
No 147
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=52.05 E-value=1.2e+02 Score=24.62 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=40.9
Q ss_pred CCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++......-.+ .++..+. .....++... +..+......+++.|+++++.+|-+..++.+.
T Consensus 41 ~~~dlvl~d~~~~~~~g~-~~~~~l~~~~~~~~iivls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 109 (218)
T TIGR01387 41 DDYDLIILDVMLPGMDGW-QILQTLRRSGKQTPVLFLT-ARDSVADKVKGLDLGADDYLVKPFSFSELLAR 109 (218)
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHccCCCCcEEEEE-cCCCHHHHHHHHHcCCCeEEECCCCHHHHHHH
Confidence 346778875443322111 3333333 2334555544 44556667888999999999999998876543
No 148
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=51.73 E-value=92 Score=25.79 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=40.7
Q ss_pred CCCceEEEeCCCCee-echhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQV-IPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWti-IPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++..-... -.--.++..++. ....++... ...+......+++.|++|++.+|.++.++.+.
T Consensus 43 ~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 113 (227)
T TIGR03787 43 RLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLT-ARDSDFDTVSGLRLGADDYLTKDISLPHLLAR 113 (227)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHH
Confidence 346788886433221 011223444332 234455544 33455567788999999999999998876553
No 149
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=51.51 E-value=82 Score=29.28 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=42.1
Q ss_pred ecChhhhhhhccccCCCceEEEeC-----CCCeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 117 VSTPQELQQLQPADGQAENIVIDL-----PDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~-----~DWtiIPlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
+.++++...+.. ..++.+++.. .||.+..++.|....+.- +..||+. ......+-++.+|..|+|||.+.
T Consensus 180 v~s~~~a~~a~~--~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~-GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 180 ILTPEDALRAVD--AGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLD-GGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred cCCHHHHHHHHH--CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEe-CCCCCHHHHHHHHHcCCCEEEEc
Confidence 466666444433 4577888744 357777777664433322 2455543 33333444455556899999998
Q ss_pred cC
Q 024251 190 VE 191 (270)
Q Consensus 190 ~~ 191 (270)
..
T Consensus 257 ~~ 258 (299)
T cd02809 257 RP 258 (299)
T ss_pred HH
Confidence 75
No 150
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=51.45 E-value=28 Score=31.46 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=32.9
Q ss_pred hhhhhhcccCCCceEEEE-----cCCHHHHHHHHHHHhcccCeEEEecCCHHHHH
Q 024251 148 AENIVASFQGSGKTVFAI-----SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (270)
Q Consensus 148 lENlIA~~q~~~~~i~a~-----v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~ 197 (270)
-+.+|..++..+-.+++- +++.++++.++ +.|+|||+ ||.|+.+.
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~---~~Gvdgii--TD~p~~~~ 261 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYL---ELGVDCIC--PNDPVLLV 261 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHH---HcCCCEEE--cCCHHHHH
Confidence 367888888888787776 56677777654 77999976 67777443
No 151
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=51.39 E-value=43 Score=30.42 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=66.9
Q ss_pred HHHHHHHhCCcEEEEcCc-----chhhhhhccceeeee-----eeeecCCccccCCCCeEEEEEEecChhhhhhhccc--
Q 024251 62 VMTAAVERGWNTFVFLSE-----NQQLAIDWSTIALLD-----PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA-- 129 (270)
Q Consensus 62 ~vT~ALEsG~d~~vv~~~-----~~e~a~~l~~i~~i~-----~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~-- 129 (270)
.+..|++.|++.+-+... +.+..++...+.-++ |+++. ...+|..++. .+++...+++..
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~----~~~~Gvh~~~----~~~~~~~~~~~~a~ 166 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAM----MYPRGPHIDD----RDPELVAHAARLGA 166 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEE----EeccCccccc----ccHHHHHHHHHHHH
Confidence 478899999997665432 123333333332211 22220 0122322222 234444442221
Q ss_pred cCCCceEEEeCCCCeeechhhhhhcccCCCceEEE--EcC--CHHHHHH-HHHHHhcccCeEEEe-----cCCH-HHHHH
Q 024251 130 DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA--ISK--TPSEAQI-FLEALEQGLGGIVLK-----VEDV-KAVLA 198 (270)
Q Consensus 130 ~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a--~v~--~~~eA~~-~l~~LE~G~DGVvl~-----~~d~-~~v~~ 198 (270)
...+||+-..+. ..+|.+-.-.+..+..|++ ..+ |.+++.- +-++++.|++|+.+- .+|| ..+++
T Consensus 167 ~~GADyikt~~~----~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~ 242 (258)
T TIGR01949 167 ELGADIVKTPYT----GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKA 242 (258)
T ss_pred HHCCCEEeccCC----CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHH
Confidence 245888887643 2444443332223344444 455 5666644 447889999999754 4565 34566
Q ss_pred HHHhhcc
Q 024251 199 LKEYFDG 205 (270)
Q Consensus 199 l~~~~~~ 205 (270)
|++++..
T Consensus 243 l~~~i~~ 249 (258)
T TIGR01949 243 VCKIVHE 249 (258)
T ss_pred HHHHHhC
Confidence 6666643
No 152
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=51.34 E-value=94 Score=26.77 Aligned_cols=66 Identities=14% Similarity=-0.000 Sum_probs=40.3
Q ss_pred CCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
.+.+.++++..-+..=-+ .++..+. .....|+.... .++......+++.|++|.+.+|-++.++.+
T Consensus 49 ~~pdlvllD~~mp~~~gl-e~~~~l~~~~~~~~iivls~-~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~ 116 (225)
T PRK10046 49 FKPGLILLDNYLPDGRGI-NLLHELVQAHYPGDVVFTTA-ASDMETVSEAVRCGVFDYLIKPIAYERLGQ 116 (225)
T ss_pred cCCCEEEEeCCCCCCcHH-HHHHHHHhcCCCCCEEEEEc-CCCHHHHHHHHHcCccEEEECCcCHHHHHH
Confidence 346788886543332222 2233322 22345555443 344567788999999999999999887654
No 153
>CHL00148 orf27 Ycf27; Reviewed
Probab=51.31 E-value=55 Score=27.21 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=39.0
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++......-.+ .++..++. ....++..... .+......+++.|++|++.+|-++.++.+.
T Consensus 50 ~~d~illd~~~~~~~g~-~~~~~l~~~~~~~ii~ls~~-~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~ 116 (240)
T CHL00148 50 QPDLVILDVMMPKLDGY-GVCQEIRKESDVPIIMLTAL-GDVSDRITGLELGADDYVVKPFSPKELEAR 116 (240)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCcEEEEECC-CCHHhHHHHHHCCCCEEEeCCCCHHHHHHH
Confidence 45777775443332122 22222221 23455554433 344556788999999999999999877553
No 154
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=51.30 E-value=21 Score=31.31 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
.+.+.+.+|+ .+++.+..+++.|+|+|+.+.
T Consensus 198 ~~g~~v~~Wtvn~~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 198 KRGIPVRLWTVNEEEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEeCCC
Confidence 4577899999 679999999999999998653
No 155
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=51.28 E-value=26 Score=31.25 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=27.4
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+-+.+++|+ .+.+.+...++.|+|+++.+..
T Consensus 216 ~~g~~v~~wTvn~~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 216 KKGLLVHPYTVNEKADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HCCCEEEEEecCCHHHHHHHHhcCCCEEEeCCH
Confidence 4677899999 5799999999999999998653
No 156
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=50.97 E-value=89 Score=26.52 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=55.4
Q ss_pred hhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~---~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
-+.+..+++.|++.+.++..+ .+..+...++..+. +..| ..+-+.+.- + ++.. ...+-+
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~----------~~~~----~~l~i~~~~--~-la~~-~g~~Gv 77 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELC----------RRYG----VPFIVNDRV--D-LALA-LGADGV 77 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHH----------HHhC----CeEEEECHH--H-HHHH-cCCCEE
Confidence 457888999999998887532 22222222222111 0011 122233321 2 2222 234455
Q ss_pred EEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 137 vv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
-+...+ ++.+.+-..+ +....|-..+.+.+|++ ++++.|+|=|.+
T Consensus 78 Hl~~~~---~~~~~~r~~~-~~~~~ig~s~h~~~e~~---~a~~~g~dyi~~ 122 (196)
T TIGR00693 78 HLGQDD---LPASEARALL-GPDKIIGVSTHNLEELA---EAEAEGADYIGF 122 (196)
T ss_pred ecCccc---CCHHHHHHhc-CCCCEEEEeCCCHHHHH---HHhHcCCCEEEE
Confidence 553333 3444443322 23457888999998875 577899999986
No 157
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=50.82 E-value=23 Score=31.12 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=26.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
.+.+.+++|| .+++.+...++.|+|+++.+.
T Consensus 199 ~~G~~v~~wTvn~~~~~~~l~~~GVdgi~TD~ 230 (233)
T cd08582 199 DAGLKLNVWTVDDAEDAKRLIELGVDSITTNR 230 (233)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHCCCCEEEcCC
Confidence 4577899999 569999999999999999764
No 158
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.70 E-value=1.1e+02 Score=27.75 Aligned_cols=121 Identities=22% Similarity=0.166 Sum_probs=71.7
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
-.+++.+..+.|++.+=+.-...+-.+.+..+.. ..+ +..+|+ ..|.++++.+.+... .+++++.
T Consensus 29 a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~----------~~p--~~~IGA-GTVl~~~~a~~a~~a--GA~Fivs 93 (212)
T PRK05718 29 AVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAK----------EVP--EALIGA-GTVLNPEQLAQAIEA--GAQFIVS 93 (212)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHH----------HCC--CCEEEE-eeccCHHHHHHHHHc--CCCEEEC
Confidence 3566777777778765554222111111111110 011 233443 366788776666553 5677776
Q ss_pred eCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC----HHHHHHHHHhh
Q 024251 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 203 (270)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d----~~~v~~l~~~~ 203 (270)
-..+. .++...+..+.-++-.+.|+.| +..+++.|+|-|-+-|.+ ++-++.|+..+
T Consensus 94 P~~~~------~vi~~a~~~~i~~iPG~~TptE---i~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~ 153 (212)
T PRK05718 94 PGLTP------PLLKAAQEGPIPLIPGVSTPSE---LMLGMELGLRTFKFFPAEASGGVKMLKALAGPF 153 (212)
T ss_pred CCCCH------HHHHHHHHcCCCEeCCCCCHHH---HHHHHHCCCCEEEEccchhccCHHHHHHHhccC
Confidence 44442 4555556666677779999999 456889999999998865 45566666554
No 159
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=50.53 E-value=22 Score=31.45 Aligned_cols=31 Identities=10% Similarity=-0.039 Sum_probs=26.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
.+.+.+|+|| .+.+.|...++-|+|+++.+.
T Consensus 203 ~~Gl~v~vwTVn~~~~~~~l~~~GVdgiiTD~ 234 (237)
T cd08583 203 KAGIYVYVYTINDLKDAQEYKKLGVYGIYTDF 234 (237)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCC
Confidence 4577899999 458899999999999998643
No 160
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=50.32 E-value=69 Score=30.31 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=57.9
Q ss_pred hHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 61 QVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 61 e~vT~ALEsG~d~~vv~~~~--~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
+.+..+++.+++.+.+.-.. .+.++++..- | +-++..+.+.++...+.. ...|.+|+
T Consensus 104 ~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~-----------------g--i~v~~~v~s~~~A~~a~~--~G~D~iv~ 162 (330)
T PF03060_consen 104 EQLDVALEAKPDVVSFGFGLPPPEVIERLHAA-----------------G--IKVIPQVTSVREARKAAK--AGADAIVA 162 (330)
T ss_dssp HHHHHHHHS--SEEEEESSSC-HHHHHHHHHT-----------------T---EEEEEESSHHHHHHHHH--TT-SEEEE
T ss_pred cccccccccceEEEEeecccchHHHHHHHHHc-----------------C--CccccccCCHHHHHHhhh--cCCCEEEE
Confidence 34555556666677775332 2333333322 3 235668899888665544 35888888
Q ss_pred eCC------CC---eeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 139 DLP------DW---QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 139 ~~~------DW---tiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.+. +. ....|...+.+.-+ .-|++ +.-.-+.+-+..+|..|+|||.+-|.
T Consensus 163 qG~eAGGH~g~~~~~~~~L~~~v~~~~~--iPVia-AGGI~dg~~iaaal~lGA~gV~~GTr 221 (330)
T PF03060_consen 163 QGPEAGGHRGFEVGSTFSLLPQVRDAVD--IPVIA-AGGIADGRGIAAALALGADGVQMGTR 221 (330)
T ss_dssp E-TTSSEE---SSG-HHHHHHHHHHH-S--S-EEE-ESS--SHHHHHHHHHCT-SEEEESHH
T ss_pred eccccCCCCCccccceeeHHHHHhhhcC--CcEEE-ecCcCCHHHHHHHHHcCCCEeecCCe
Confidence 763 21 24555555555432 34554 56666777778889999999998764
No 161
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=50.25 E-value=26 Score=32.94 Aligned_cols=136 Identities=10% Similarity=0.121 Sum_probs=76.1
Q ss_pred EEEEe---CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccC-CCCe-EEEEEEecC
Q 024251 53 VWIWT---ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDS-GDRR-VGSIIEVST 119 (270)
Q Consensus 53 vWiw~---~~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~--~l~~~~g~~~~~-~gk~-v~~~v~V~~ 119 (270)
|.+.- .+.+.+..||+.|++.|.++..+ .+.++++..+..-. ++-.+.|.+=.. ++.. ++ ...++
T Consensus 77 v~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g--~s~t~ 154 (281)
T PRK06806 77 VAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIE--MLLTS 154 (281)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccc--ceeCC
Confidence 66644 37899999999999999998543 23333433333211 122222221111 1111 12 23578
Q ss_pred hhhhhhhccccCCCceEEEeC-------CCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 120 PQELQQLQPADGQAENIVIDL-------PDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 120 ~ed~e~~~~~~~~~~~vvv~~-------~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+++..++... ...||+-+.. .+...|.+|.|=.--+..+.-+++.=.|-=...-+-.+.+.|+++|-+.++
T Consensus 155 ~eea~~f~~~-tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~ 232 (281)
T PRK06806 155 TTEAKRFAEE-TDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATA 232 (281)
T ss_pred HHHHHHHHHh-hCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHH
Confidence 8887776644 3467877711 244567776543332233445666653322223355678999999999887
No 162
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.20 E-value=1.2e+02 Score=27.42 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=76.4
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCC-CCeEEEEEEecChhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
-.+++.+.++.|+..+=++-.+..-.+.+..+..- .+.+ +.-+| -..|.++++.+.+... .++++|
T Consensus 27 a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~----------~~~~p~~~vG-aGTV~~~~~~~~a~~a--GA~Fiv 93 (213)
T PRK06552 27 ALKISLAVIKGGIKAIEVTYTNPFASEVIKELVEL----------YKDDPEVLIG-AGTVLDAVTARLAILA--GAQFIV 93 (213)
T ss_pred HHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHH----------cCCCCCeEEe-eeeCCCHHHHHHHHHc--CCCEEE
Confidence 46778888888888765554332211222222110 0100 12233 3478999998777654 456666
Q ss_pred EeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC---HHHHHHHHHhh
Q 024251 138 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED---VKAVLALKEYF 203 (270)
Q Consensus 138 v~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d---~~~v~~l~~~~ 203 (270)
--..+ +.++......+--++-.+.|++|+..+ ++.|+|-|-|-|.+ ++.++.++..+
T Consensus 94 sP~~~------~~v~~~~~~~~i~~iPG~~T~~E~~~A---~~~Gad~vklFPa~~~G~~~ik~l~~~~ 153 (213)
T PRK06552 94 SPSFN------RETAKICNLYQIPYLPGCMTVTEIVTA---LEAGSEIVKLFPGSTLGPSFIKAIKGPL 153 (213)
T ss_pred CCCCC------HHHHHHHHHcCCCEECCcCCHHHHHHH---HHcCCCEEEECCcccCCHHHHHHHhhhC
Confidence 43222 566676677777899999999999766 57999999997654 46566665554
No 163
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=50.14 E-value=28 Score=33.13 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=88.9
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCC--------------ccccCCCCeEEEEEEecChh
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEG--------------EVYDSGDRRVGSIIEVSTPQ 121 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g--------------~~~~~~gk~v~~~v~V~~~e 121 (270)
.-++.++..+|..|+.++++|- +++|.++++-+-.+..|.-..+= +-+..-+..++++++|++.+
T Consensus 76 ~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~ 155 (255)
T COG3836 76 VGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRA 155 (255)
T ss_pred CCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHH
Confidence 3578999999999999999995 56888887777766666333211 33445577899999999998
Q ss_pred hhhhhcc--ccCCCceEEEeCCC--------Ce------eechhhhhhcccCCCceEEEE-cCCHHHHHHHHHHHhcccC
Q 024251 122 ELQQLQP--ADGQAENIVIDLPD--------WQ------VIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLG 184 (270)
Q Consensus 122 d~e~~~~--~~~~~~~vvv~~~D--------Wt------iIPlENlIA~~q~~~~~i~a~-v~~~~eA~~~l~~LE~G~D 184 (270)
-++.+-. .....|-|++-..| |+ .=+.|++++..-.. +|.... ..+++.|+-+ |+.|+.
T Consensus 156 gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aa-GKaagil~~~p~~a~~y---l~lGa~ 231 (255)
T COG3836 156 GLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAA-GKAAGILAADPADARRY---LALGAT 231 (255)
T ss_pred HHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhc-CCccccccCCHHHHHHH---HHhCCe
Confidence 8877443 33567888874443 11 12456776665433 343333 4566777654 678988
Q ss_pred eEEEecCCH
Q 024251 185 GIVLKVEDV 193 (270)
Q Consensus 185 GVvl~~~d~ 193 (270)
=+.+-.|..
T Consensus 232 fvavG~D~~ 240 (255)
T COG3836 232 FVAVGSDTG 240 (255)
T ss_pred EEEEeccHH
Confidence 888777643
No 164
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=50.05 E-value=1e+02 Score=25.05 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=40.1
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
..+.++++..-...-.+ .++..+.. ....++.... ..+......+++.|++|.+.+|-++.++.+
T Consensus 46 ~~d~vi~d~~~~~~~g~-~~~~~l~~~~~~~~~~ii~ls~-~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~ 114 (226)
T TIGR02154 46 GPDLILLDWMLPGTSGI-ELCRRLRRRPETRAIPIIMLTA-RGEEEDRVRGLETGADDYITKPFSPRELLA 114 (226)
T ss_pred CCCEEEEECCCCCCcHH-HHHHHHHccccCCCCCEEEEec-CCCHHHHHHHHhcCcceEEeCCCCHHHHHH
Confidence 46788886543332222 23333322 2345555443 344566778999999999999999887644
No 165
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=49.97 E-value=1.3e+02 Score=26.07 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=37.4
Q ss_pred CCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
+.+.+++... +.++++..+...+-.++..+.+.++++. +.+.|+|++.+.+
T Consensus 80 g~d~v~l~~~-----~~~~~~~~~~~~~i~~i~~v~~~~~~~~---~~~~gad~i~~~~ 130 (236)
T cd04730 80 GVPVVSFSFG-----PPAEVVERLKAAGIKVIPTVTSVEEARK---AEAAGADALVAQG 130 (236)
T ss_pred CCCEEEEcCC-----CCHHHHHHHHHcCCEEEEeCCCHHHHHH---HHHcCCCEEEEeC
Confidence 4677887543 4466777766666788888888888765 4568999999855
No 166
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=49.57 E-value=1.2e+02 Score=23.39 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=66.3
Q ss_pred cEEEEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC-hhhhhhhccc
Q 024251 51 KRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPA 129 (270)
Q Consensus 51 K~vWiw~~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~-~ed~e~~~~~ 129 (270)
.++++=+.+.+-...+.+-|++.++...+ .+..+++.++. + |..+-+.++..+ ++.++.....
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~-~~~~~~i~~~~-------------~--~~~~d~vid~~g~~~~~~~~~~~ 78 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSD-DDFVEQIRELT-------------G--GRGVDVVIDCVGSGDTLQEAIKL 78 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTT-SSHHHHHHHHT-------------T--TSSEEEEEESSSSHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccc-ccccccccccc-------------c--cccceEEEEecCcHHHHHHHHHH
Confidence 34666666666677777788777775543 22333333330 1 123345556666 7887777766
Q ss_pred cCCC-ceEEEeCC--CCeeechhhhhhcccCCCceEEEEcCC-HHHHHHHHHHHh
Q 024251 130 DGQA-ENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKT-PSEAQIFLEALE 180 (270)
Q Consensus 130 ~~~~-~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~v~~-~~eA~~~l~~LE 180 (270)
+++. ..+++-.. ++..+|.-+++.. +.++...... ++|.+.+++-|.
T Consensus 79 l~~~G~~v~vg~~~~~~~~~~~~~~~~~----~~~i~g~~~~~~~~~~~~~~~la 129 (130)
T PF00107_consen 79 LRPGGRIVVVGVYGGDPISFNLMNLMFK----EITIRGSWGGSPEDFQEALQLLA 129 (130)
T ss_dssp EEEEEEEEEESSTSTSEEEEEHHHHHHT----TEEEEEESSGGHHHHHHHHHHHH
T ss_pred hccCCEEEEEEccCCCCCCCCHHHHHhC----CcEEEEEccCCHHHHHHHHHHhc
Confidence 6664 44455444 4777888888774 4566655544 488888887664
No 167
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=49.53 E-value=25 Score=31.36 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=25.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~ 77 (270)
...+++++|| .+.+.|...++.|+|+++.+
T Consensus 197 ~~G~~v~vWTVn~~~~~~~l~~~GVdgiiTD 227 (229)
T cd08581 197 AGTWKWVIYEVNEPAEALALAARGVALIETD 227 (229)
T ss_pred hCCceEEEEEcCCHHHHHHHHHhCCcEEEcC
Confidence 4567799999 57888999999999999864
No 168
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=49.50 E-value=24 Score=33.68 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=30.1
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCcchhhhhhc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l 87 (270)
...+++++|| .+.+.|...++.|+|+|+.+. .++.+++
T Consensus 243 ~~G~~v~vWTVNd~~~~~~l~~~GVDgIiTD~--P~~l~~~ 281 (315)
T cd08609 243 KDNVSVNLWVVNEPWLFSLLWCSGVSSVTTNA--CQLLKDM 281 (315)
T ss_pred HCCCEEEEECCCCHHHHHHHHhcCCCEEEcCC--HHHHHHh
Confidence 3577899999 568999999999999999765 4455444
No 169
>PRK08187 pyruvate kinase; Validated
Probab=49.32 E-value=82 Score=32.30 Aligned_cols=137 Identities=13% Similarity=0.116 Sum_probs=74.2
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC---
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~--- 132 (270)
+.+++-+..+++ ++|.|.++. ++++.+..+..+- . -.++ ..+..++++..|.+++-++.+..-...
T Consensus 312 ekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L--~---~~~~----~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~ 381 (493)
T PRK08187 312 EKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAAL--A---ARRP----DDWRKLGLVLKIETPRAVANLPELIVQAAG 381 (493)
T ss_pred HhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHH--H---HhCC----CCCCCCeEEEEECCHHHHHHHHHHHHHhCc
Confidence 345777888888 799988875 3344444443330 0 0000 002356788899998888776554422
Q ss_pred --CceEEEeCCC------Ceeech--hhhhhcccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 133 --AENIVIDLPD------WQVIPA--ENIVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 133 --~~~vvv~~~D------WtiIPl--ENlIA~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..-+++-..| ++-.|. +.||......+.-+|.. ..+-.|+--+..+ .|+|+|+|...
T Consensus 382 ~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs~G 459 (493)
T PRK08187 382 RQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLNKG 459 (493)
T ss_pred CCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeecCC
Confidence 2356664433 333332 23443333334334321 1222333333333 89999999955
Q ss_pred C--HHHHHHHHHhhcc
Q 024251 192 D--VKAVLALKEYFDG 205 (270)
Q Consensus 192 d--~~~v~~l~~~~~~ 205 (270)
. .+.|+-|.+++.+
T Consensus 460 ~ypveaV~~l~~I~~~ 475 (493)
T PRK08187 460 PYLVEAVTFLDDLLAR 475 (493)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3 3567777777654
No 170
>PHA00440 host protein H-NS-interacting protein
Probab=49.27 E-value=10 Score=31.31 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhccccccccceeeeEEEEEEE
Q 024251 168 TPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223 (270)
Q Consensus 168 ~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~~~~~~~~~l~L~~a~Vt~V 223 (270)
|+-+.+....+|-+|.||++--.=--+--..+|+.... -..+..+...||||..|
T Consensus 43 ~~~~re~lvqaLT~G~egai~F~~k~giRe~IKe~~~E-~~d~~~~k~sPATvRev 97 (98)
T PHA00440 43 NPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEE-STDKDLFKFSPATVREV 97 (98)
T ss_pred ChHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhHh-hccCcceeecCceEEec
Confidence 89999999999999999987221111111122333322 12355689999999875
No 171
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=49.00 E-value=66 Score=26.31 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=39.0
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-...-.+ +++..++. ....++.... ..+......+++.|++|++.+|-++.++.+.
T Consensus 47 ~~dlvl~d~~~~~~~g~-~~~~~l~~~~~~~~ii~ls~-~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~ 114 (228)
T PRK11083 47 PPDLVILDVGLPDISGF-ELCRQLLAFHPALPVIFLTA-RSDEVDRLVGLEIGADDYVAKPFSPREVAAR 114 (228)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhhCCCCCEEEEEc-CCcHHHHHHHhhcCCCeEEECCCCHHHHHHH
Confidence 35677775443332222 23333332 2345555443 3344556788999999999999998876543
No 172
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=48.81 E-value=26 Score=33.45 Aligned_cols=38 Identities=8% Similarity=0.026 Sum_probs=29.8
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCcchhhhhhc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l 87 (270)
...+.+++|| .+.+.|...++.|+|+++.+.. +...++
T Consensus 243 ~~Gl~V~vWTVNd~~~~~~l~~~GVDgIiTD~P--~~l~~~ 281 (316)
T cd08610 243 AANIHTNVYVINEPWLFSLAWCSGIHSVTTNNI--HLLKQL 281 (316)
T ss_pred HCCCEEEEECCCCHHHHHHHHhCCcCEEEeCCH--HHHHHh
Confidence 3567899999 5689999999999999998653 444433
No 173
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=48.66 E-value=1.9e+02 Score=25.42 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=32.9
Q ss_pred hhhhcccCCCceEEEEc-------CCHHH-HHHHHHHHhcccCeEEEecC----CHHHHHHHHHhhc
Q 024251 150 NIVASFQGSGKTVFAIS-------KTPSE-AQIFLEALEQGLGGIVLKVE----DVKAVLALKEYFD 204 (270)
Q Consensus 150 NlIA~~q~~~~~i~a~v-------~~~~e-A~~~l~~LE~G~DGVvl~~~----d~~~v~~l~~~~~ 204 (270)
+.+..+.+.+-.+.... .++++ .+.+-.+.|.|+|.|-|... .|.++.++-+.+.
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALR 185 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHH
Confidence 33444444454554444 34444 45556678899999988644 5777777655553
No 174
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=48.54 E-value=72 Score=32.55 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=69.1
Q ss_pred EEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCC
Q 024251 54 WIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (270)
Q Consensus 54 Wiw~~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~ 133 (270)
++-.+.++.+.+.+|.|+|-++++..|-+....|..+..|...+ + +.. .+...|.+.++-..+.. ..+
T Consensus 244 g~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~-------p--~~~-vi~g~v~t~e~a~~a~~--aGa 311 (505)
T PLN02274 244 GTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTY-------P--ELD-VIGGNVVTMYQAQNLIQ--AGV 311 (505)
T ss_pred cCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhC-------C--CCc-EEEecCCCHHHHHHHHH--cCc
Confidence 33346799999999999999999875533333233333322100 0 111 11235788887665554 357
Q ss_pred ceEEEe--------CCC------CeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 134 ENIVID--------LPD------WQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 134 ~~vvv~--------~~D------WtiIPlENlIA~~q~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
|.|++. .+. .+.=++.++-..++..+..||+. +.+..++. .+|..|+|+|++-+-
T Consensus 312 D~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~---kAla~GA~~V~vGs~ 382 (505)
T PLN02274 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIV---KALTLGASTVMMGSF 382 (505)
T ss_pred CEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHH---HHHHcCCCEEEEchh
Confidence 777662 111 12223333333333335567764 56666654 566789999998653
No 175
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=48.51 E-value=62 Score=27.37 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.1
Q ss_pred CchhHHHHHHHhCCcEEEEcCc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
+..+.+..+.+.|+|++.+...
T Consensus 68 d~~~~~~~~~~~g~dgv~vh~~ 89 (211)
T cd00429 68 NPERYIEAFAKAGADIITFHAE 89 (211)
T ss_pred CHHHHHHHHHHcCCCEEEECcc
Confidence 3345788899999999988753
No 176
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=48.02 E-value=1.4e+02 Score=23.90 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=39.3
Q ss_pred CCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
+.+.++++......--+ .++..+. ....++..... .+......+++.|++|++.+|-++.++.+.
T Consensus 47 ~~dlvi~d~~~~~~~g~-~~~~~l~-~~~~vi~~s~~-~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~ 111 (196)
T PRK10360 47 GVQVCICDISMPDISGL-ELLSQLP-KGMATIMLSVH-DSPALVEQALNAGARGFLSKRCSPDELIAA 111 (196)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHc-cCCCEEEEECC-CCHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 46778886443222112 2334433 23455555443 444567788899999999999998876543
No 177
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=47.98 E-value=1.7e+02 Score=24.76 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=55.7
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeEEE-EEEecChhhhhhhccccCCCceEE
Q 024251 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGS-IIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~-~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
...+..+.+.|+|.++++.+. .+...++-+. .++.|.+.++ .....++++..++. ....+++.
T Consensus 67 ~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~-------------~~~~g~~~~v~~~~~~t~~e~~~~~--~~~~d~v~ 131 (202)
T cd04726 67 ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKA-------------AKKYGKEVQVDLIGVEDPEKRAKLL--KLGVDIVI 131 (202)
T ss_pred HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHH-------------HHHcCCeEEEEEeCCCCHHHHHHHH--HCCCCEEE
Confidence 346788999999999987542 1111111111 1123444443 24555666655422 23678887
Q ss_pred EeC----CCCeeechhhhhhcccC-CCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 138 IDL----PDWQVIPAENIVASFQG-SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 138 v~~----~DWtiIPlENlIA~~q~-~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
+.. .....-.-...+.++.. .+..+.+ .++ ++ .+-+.++.|+||+++-.
T Consensus 132 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~---~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 132 LHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PD---TLPEFKKAGADIVIVGR 187 (202)
T ss_pred EcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC-HH---HHHHHHhcCCCEEEEee
Confidence 731 11111111222232221 2223333 342 44 45577789999998765
No 178
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=47.97 E-value=1.6e+02 Score=26.92 Aligned_cols=127 Identities=13% Similarity=-0.016 Sum_probs=64.0
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhcccee---eeeeeeec-CCccccCCCCeEEEEEEecChhhhhhhcccc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA---LLDPLFIK-EGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~---~~e~a~~l~~i~---~i~~l~~~-~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~ 130 (270)
++.+-+...|+.|++.+++... +.++.+++.+.- ++--|-.+ +| ++..++......+.-++..+....
T Consensus 84 rs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g-----~~~~v~~~Gw~~~~~~~~~~~~~~ 158 (243)
T TIGR01919 84 RDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDG-----EWHTLGNRGWSDGGGDLEVLERLL 158 (243)
T ss_pred CCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCC-----ceEEEECCCeecCCCcHHHHHHHH
Confidence 6899999999999999998753 344555443210 11111112 22 112222211112222333332222
Q ss_pred C--CCceEEEeCC---CC-eeechhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 131 G--QAENIVIDLP---DW-QVIPAENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 131 ~--~~~~vvv~~~---DW-tiIPlENlIA~~q-~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
. ....+|+..- += +=+.+| ++.++. ..+..|++ .+++.+|-+.+-...+.|++|+++..
T Consensus 159 ~~~g~~~ii~tdI~~dGt~~G~d~~-l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~ 226 (243)
T TIGR01919 159 DSGGCSRVVVTDSKKDGLSGGPNEL-LLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGK 226 (243)
T ss_pred HhCCCCEEEEEecCCcccCCCcCHH-HHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhH
Confidence 1 2344554221 11 123333 222222 23456665 48999999877555578999999754
No 179
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=47.93 E-value=1.4e+02 Score=23.84 Aligned_cols=17 Identities=18% Similarity=0.050 Sum_probs=14.4
Q ss_pred HHHHHhCCcEEEEcCcc
Q 024251 64 TAAVERGWNTFVFLSEN 80 (270)
Q Consensus 64 T~ALEsG~d~~vv~~~~ 80 (270)
..+.+.|+|.+.+...+
T Consensus 78 ~~~~~~g~d~v~l~~~~ 94 (200)
T cd04722 78 AAARAAGADGVEIHGAV 94 (200)
T ss_pred HHHHHcCCCEEEEeccC
Confidence 48899999999988764
No 180
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=47.59 E-value=1.4e+02 Score=28.60 Aligned_cols=128 Identities=16% Similarity=0.298 Sum_probs=81.2
Q ss_pred chhHHHHHHHhC-CcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC-hhhhhhhccccCCCceE
Q 024251 59 SKQVMTAAVERG-WNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENI 136 (270)
Q Consensus 59 ~Ke~vT~ALEsG-~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~-~ed~e~~~~~~~~~~~v 136 (270)
.-|++.+||.+| .|+.|.-.|-+ | +++..+.+++.+-|-++--+++-+- ||=++.+ ++..-+
T Consensus 77 ~SEi~~t~l~~g~iDaaVivcDga------G------TVI~~nP~lVQGigGR~SGLv~TtPIpevi~~I----e~~gGi 140 (259)
T TIGR03275 77 ASEILMTALKSGFIDAAVIVCDGA------G------TVITTNPALVQGLGGRISGLIETSPIPEVIEKI----EDEGGI 140 (259)
T ss_pred HHHHHHHHHhcCCcceEEEEecCc------C------eEEeCCHHHHhhccceeeeeeeccccHHHHHHH----HhcCCE
Confidence 479999999999 67655443211 1 1233455555555544433433222 3333333 345668
Q ss_pred EEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhc--ccCeEEEecC----CHHHHHHHHHhh
Q 024251 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ--GLGGIVLKVE----DVKAVLALKEYF 203 (270)
Q Consensus 137 vv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~--G~DGVvl~~~----d~~~v~~l~~~~ 203 (270)
+++..+-+|=|.+-+.-++.---.+|...+.++++|+..-+ ||. |++-+++..- +.++..++.++.
T Consensus 141 VLd~~tA~IDq~~Gv~~Aie~Gyk~IaVTv~~~~~a~~iRe-~e~~~~~~~~if~VHtTGis~eea~~~~~~a 212 (259)
T TIGR03275 141 VLDPDTATIDQIKGVEKAIELGYKKIAVTVADAEDAKAIRE-LESESGIDIIIFAVHTTGIDREDAEEVVQYA 212 (259)
T ss_pred EeCCccccccHHHHHHHHHHcCCceEEEEecCHHHHHHHHH-hccccCCcEEEEEEECCCCCHHHHHHHHHhh
Confidence 99888999999999988877667799999999999987654 444 8887776432 334544444433
No 181
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=47.45 E-value=29 Score=32.17 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=27.3
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
+....+++|| .+++.|...++-|+|+++.+..
T Consensus 259 ~~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P 291 (300)
T cd08612 259 KRGIQVYGWVLNDEEEFERAFELGADGVMTDYP 291 (300)
T ss_pred HCCCEEEEeecCCHHHHHHHHhcCCCEEEeCCH
Confidence 3567799999 5799999999999999998653
No 182
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=47.27 E-value=80 Score=28.63 Aligned_cols=85 Identities=15% Similarity=0.039 Sum_probs=45.3
Q ss_pred CccccCCCCeEEEEEEec-----Chhhhhhhcc--ccCCCceEEEeCCC--Ceeechhhh--hhcccCCCceEEEEcCCH
Q 024251 101 GEVYDSGDRRVGSIIEVS-----TPQELQQLQP--ADGQAENIVIDLPD--WQVIPAENI--VASFQGSGKTVFAISKTP 169 (270)
Q Consensus 101 g~~~~~~gk~v~~~v~V~-----~~ed~e~~~~--~~~~~~~vvv~~~D--WtiIPlENl--IA~~q~~~~~i~a~v~~~ 169 (270)
|.++-..|..++...+.. .+|+....+. +....+++-++..+ ..-++.|-+ +.+.-+...-+-..+++.
T Consensus 109 gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~ 188 (205)
T TIGR01769 109 AYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSP 188 (205)
T ss_pred EEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCH
Confidence 443333344555443333 3444443222 23456788887732 223554433 122113344455678899
Q ss_pred HHHHHHHHHHhcccCeEEE
Q 024251 170 SEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 170 ~eA~~~l~~LE~G~DGVvl 188 (270)
++|+. .++.|+|||++
T Consensus 189 e~a~~---l~~~GAD~VVV 204 (205)
T TIGR01769 189 EIAYE---IVLAGADAIVT 204 (205)
T ss_pred HHHHH---HHHcCCCEEEe
Confidence 98885 56789999986
No 183
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=47.19 E-value=2.1e+02 Score=25.54 Aligned_cols=114 Identities=5% Similarity=0.065 Sum_probs=61.3
Q ss_pred CchhHHHHHHHhCCc--EEEEcCcc-----hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhcccc
Q 024251 58 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d--~~vv~~~~-----~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~ 130 (270)
.+.+-+..|.+.|+| +|||.+.. .+.++++.+. +++.-+.||+++. .+++++.+++..
T Consensus 9 t~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~-------------~~~~~~~VgVf~~-~~~~~i~~~~~~- 73 (207)
T PRK13958 9 TTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASA-------------VPNHIDKVCVVVN-PDLTTIEHILSN- 73 (207)
T ss_pred CcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHh-------------CCCCCCEEEEEeC-CCHHHHHHHHHh-
Confidence 356778899999999 58875432 4555555442 1122355676633 456666665553
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.+-+.+-+.+.-. . ..++.+... .-+++....--++-...+.-.+..+|.+||++.
T Consensus 74 ~~~d~vQLHG~e~----~-~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~ 131 (207)
T PRK13958 74 TSINTIQLHGTES----I-DFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTP 131 (207)
T ss_pred CCCCEEEECCCCC----H-HHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCC
Confidence 3457888876422 2 233443321 135665543311111112222335899999973
No 184
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.17 E-value=41 Score=33.59 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=46.9
Q ss_pred Chhhhhhhcccc-CCCceEEEeCCCCeeechhhhhhcccCC--CceE-EEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 119 TPQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTV-FAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 119 ~~ed~e~~~~~~-~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i-~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
++++++++.... ..+|.++|+..+-.-..+.++|..+... +..| ...+.++++|+.+.. .|+|+|.+-
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~---aGaD~I~vG 222 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVG 222 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH---cCCCEEEEC
Confidence 355555544433 4599999999886666677777776543 2334 458999999887765 699999754
No 185
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=47.10 E-value=18 Score=37.00 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=83.1
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeEEEEEEecChhhhhhhccccCCCc
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
+.||+-+..++|-|+|.+=... .+.+.+++..++ +... |+.+.++.+|..++-++.+-.-....|
T Consensus 175 eKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~-------------l~~~~~~~~~iiaKIE~~eav~NldeIi~~SD 241 (477)
T COG0469 175 EKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREI-------------LAETGGRDVKIIAKIENQEAVDNLDEIIEASD 241 (477)
T ss_pred ccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHH-------------HHHhCCCCceEEEeecCHHHHhHHHHHHHhcC
Confidence 4589999999999999644332 123333333322 1112 333678889999998888766666677
Q ss_pred eEEEeCCCCe-eechhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecCCH--
Q 024251 135 NIVIDLPDWQ-VIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVEDV-- 193 (270)
Q Consensus 135 ~vvv~~~DWt-iIPlENlIA-------~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~d~-- 193 (270)
-+.|--.|=- =||+|++.. .....+.-+|.. ..+-.|+--.+.+---|+|+|+|.-+..
T Consensus 242 GIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G 321 (477)
T COG0469 242 GIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAG 321 (477)
T ss_pred ceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcC
Confidence 7777555544 378887643 222232223322 2233566667788888999999998742
Q ss_pred ----HHHHHHHHhhc
Q 024251 194 ----KAVLALKEYFD 204 (270)
Q Consensus 194 ----~~v~~l~~~~~ 204 (270)
+.|+-+.+++.
T Consensus 322 ~yPveaV~~M~~I~~ 336 (477)
T COG0469 322 KYPVEAVATMARIAK 336 (477)
T ss_pred CCHHHHHHHHHHHHH
Confidence 44555555553
No 186
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=46.20 E-value=2.3e+02 Score=26.56 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=64.2
Q ss_pred chhHHHHHHHhCCcEEEEcCc--chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 59 SKQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~--~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
++..+-.|...|+|++++--. +.+..+++-+. ...-|.. ++++|.+.++++.+... .++.+
T Consensus 113 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~-------------a~~lGle--~LVEVh~~~El~~a~~~--ga~ii 175 (247)
T PRK13957 113 DEIQIREARAFGASAILLIVRILTPSQIKSFLKH-------------ASSLGMD--VLVEVHTEDEAKLALDC--GAEII 175 (247)
T ss_pred CHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHH-------------HHHcCCc--eEEEECCHHHHHHHHhC--CCCEE
Confidence 455555666699999876431 11111111111 0111332 78899999999887664 56678
Q ss_pred EEeCCCCe--eech---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 137 VIDLPDWQ--VIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 137 vv~~~DWt--iIPl---ENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
-|+-+|-+ .|.+ ++|...+.+. .-+|+ ..++++|++.+.+ ++|||++-+
T Consensus 176 GINnRdL~t~~vd~~~~~~L~~~ip~~-~~~IsESGI~t~~d~~~l~~----~~davLvG~ 231 (247)
T PRK13957 176 GINTRDLDTFQIHQNLVEEVAAFLPPN-IVKVGESGIESRSDLDKFRK----LVDAALIGT 231 (247)
T ss_pred EEeCCCCccceECHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHHHHHH----hCCEEEECH
Confidence 88888655 2333 4455555422 22333 4688999988653 399999743
No 187
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=46.15 E-value=44 Score=31.00 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=32.1
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 149 ENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
+.+++.++..+-.+.+ .|+++++++.+ ++.|+|||+ +|.|+.+.+
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l---~~~GVdgIi--TD~P~~l~~ 296 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDEEEFERA---FELGADGVM--TDYPTKLRE 296 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCHHHHHHH---HhcCCCEEE--eCCHHHHHH
Confidence 5677777776666655 57888777755 468999988 778875543
No 188
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=46.00 E-value=86 Score=25.83 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=37.7
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
..+.++++..-...-. -.++..++. ....++.... ..+......+++.|+|+++.+|-+..++..
T Consensus 46 ~~dlvild~~l~~~~g-~~~~~~lr~~~~~~ii~l~~-~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~ 111 (221)
T PRK10766 46 HVDLILLDINLPGEDG-LMLTRELRSRSTVGIILVTG-RTDSIDRIVGLEMGADDYVTKPLELRELLV 111 (221)
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhCCCCCEEEEEC-CCcHHHHHHHHHcCCCcEEeCCCCHHHHHH
Confidence 4678888543222111 122333322 2334544433 334455678899999999999999887654
No 189
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=45.99 E-value=59 Score=29.40 Aligned_cols=127 Identities=14% Similarity=0.220 Sum_probs=69.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~-e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
...+..=.+.|+|.+.|..|.. +..+-+. .+++.|.+.|.-+.-.++- +.+...+...|.|++
T Consensus 71 ~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~--------------~ik~~g~k~GlalnP~Tp~--~~i~~~l~~~D~vlv 134 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHVEASEHVDRTLQ--------------LIKEHGCQAGVVLNPATPL--HHLEYIMDKVDLILL 134 (220)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHH--------------HHHHcCCcEEEEeCCCCCH--HHHHHHHHhCCeEEE
Confidence 4556667789999999877621 1111111 1234567777766655433 333344456787777
Q ss_pred -----eCCCCeeec--hh---hhhhcccCCCc-eEEEEcCCHHHHHHHHHHHhcccCeEEEe-----cCCH-HHHHHHHH
Q 024251 139 -----DLPDWQVIP--AE---NIVASFQGSGK-TVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KAVLALKE 201 (270)
Q Consensus 139 -----~~~DWtiIP--lE---NlIA~~q~~~~-~i~a~v~~~~eA~~~l~~LE~G~DGVvl~-----~~d~-~~v~~l~~ 201 (270)
.+.+.+.|| +| .+-...++.+- ..+..-.-.. .+.+-.+.+.|+|++++- .+|+ +.++++++
T Consensus 135 MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~ 213 (220)
T PRK08883 135 MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213 (220)
T ss_pred EEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 345777777 33 33233222111 1222233333 446667889999999764 4454 33555555
Q ss_pred hh
Q 024251 202 YF 203 (270)
Q Consensus 202 ~~ 203 (270)
.+
T Consensus 214 ~~ 215 (220)
T PRK08883 214 EL 215 (220)
T ss_pred HH
Confidence 44
No 190
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=45.65 E-value=81 Score=26.20 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=39.7
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++......-- -.++..++. ....++... ...+......+++.|+|+++.+|-+..++.+.
T Consensus 44 ~~dlvild~~~~~~~g-~~~~~~lr~~~~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 111 (227)
T PRK09836 44 DYDLIILDIMLPDVNG-WDIVRMLRSANKGMPILLLT-ALGTIEHRVKGLELGADDYLVKPFAFAELLAR 111 (227)
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHHhcCCCCCEEEEE-cCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 4677887544332211 123333332 234455443 33455667789999999999999998876554
No 191
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=45.51 E-value=20 Score=34.11 Aligned_cols=45 Identities=31% Similarity=0.312 Sum_probs=30.6
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec-----CCHHHH
Q 024251 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (270)
Q Consensus 148 lENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~~~v 196 (270)
|+.|++++ +-..-+=|.+.++++|- .++|.|+|||++.+ .||-.+
T Consensus 174 l~iiie~a-~VPviVDAGiG~pSdAa---~aMElG~DaVL~NTAiA~A~DPv~M 223 (262)
T COG2022 174 LEIIIEEA-DVPVIVDAGIGTPSDAA---QAMELGADAVLLNTAIARAKDPVAM 223 (262)
T ss_pred HHHHHHhC-CCCEEEeCCCCChhHHH---HHHhcccceeehhhHhhccCChHHH
Confidence 45667765 33333446677888875 57899999999986 466543
No 192
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=45.19 E-value=1.1e+02 Score=30.71 Aligned_cols=117 Identities=17% Similarity=0.151 Sum_probs=67.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
..+.+.+-+|.|++.++++..|.....-+..+..+.. . -.+..+. ...|.+.++...+... .++.+.+
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~---~------~p~~~vi-~g~v~t~e~a~~l~~a--Gad~i~v 296 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA---K------YPDVQII-AGNVATAEAARALIEA--GADAVKV 296 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh---h------CCCCCEE-EeccCCHHHHHHHHHc--CCCEEEE
Confidence 4688889999999988887543222222222222111 0 0022222 2567888876666653 4566655
Q ss_pred e-----------CCCCeeechhhh---hhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 139 D-----------LPDWQVIPAENI---VASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 139 ~-----------~~DWtiIPlENl---IA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
- ..+|-+=.++-| ...++..+..||+ .+.++.|+..+ |+.|+|.|++-.
T Consensus 297 g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kA---la~GA~~v~~G~ 361 (486)
T PRK05567 297 GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKA---LAAGASAVMLGS 361 (486)
T ss_pred CCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHH---HHhCCCEEEECc
Confidence 2 124543333333 3333345678999 89999988665 567999999754
No 193
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=45.07 E-value=30 Score=34.25 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=75.1
Q ss_pred CCCcEEEEEe-------CchhHHHHHHHhCCcEEEEcCcchhhhhhccceee--eee--eeecCCccccCCCCeEEEEEE
Q 024251 48 SKPKRVWIWT-------ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIAL--LDP--LFIKEGEVYDSGDRRVGSIIE 116 (270)
Q Consensus 48 ~~~K~vWiw~-------~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~--i~~--l~~~~g~~~~~~gk~v~~~v~ 116 (270)
..+-.-|+.- -.++++.-|=..|+-++++.-+..-+.+..+.+.- ..| |.++ +-++..-+
T Consensus 118 ap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lk-----nfe~~~~~---- 188 (363)
T KOG0538|consen 118 APPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLK-----NFEGLKLT---- 188 (363)
T ss_pred CCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccc-----cccccccc----
Confidence 3344667722 26899999999999999988766556665555422 111 1111 11121100
Q ss_pred ecChhhhhhhccccCCCceEE--Ee-CCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC--
Q 024251 117 VSTPQELQQLQPADGQAENIV--ID-LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-- 191 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vv--v~-~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~-- 191 (270)
..++. ...+...++. ++ ..+|+=|+.=.=+-.+ --|+..+-+.|||+.+ .|+|++||++..-
T Consensus 189 -~v~~~-----~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~L----PIvvKGilt~eDA~~A---ve~G~~GIIVSNHGg 255 (363)
T KOG0538|consen 189 -EVEEA-----GDSGLAAYVSSQIDPSLSWKDIKWLRSITKL----PIVVKGVLTGEDARKA---VEAGVAGIIVSNHGG 255 (363)
T ss_pred -cCCcc-----cchhhhhhhhcCCCCCCChhhhHHHHhcCcC----CeEEEeecccHHHHHH---HHhCCceEEEeCCCc
Confidence 00110 0011111221 11 3489988764433321 2477888899999875 5799999999753
Q ss_pred -----CHHHHHHHHHhhcc
Q 024251 192 -----DVKAVLALKEYFDG 205 (270)
Q Consensus 192 -----d~~~v~~l~~~~~~ 205 (270)
-|+.|..|.++++.
T Consensus 256 RQlD~vpAtI~~L~Evv~a 274 (363)
T KOG0538|consen 256 RQLDYVPATIEALPEVVKA 274 (363)
T ss_pred cccCcccchHHHHHHHHHH
Confidence 24456666665543
No 194
>PRK05826 pyruvate kinase; Provisional
Probab=44.89 E-value=44 Score=33.88 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCCceEEEeCC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 131 GQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 131 ~~~~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
...+++++.|- -=.+.-+.++++.....+..|++.+.+.+.-+-+=++++. +|||++.+.|.+
T Consensus 185 ~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~-~DgImIgrgDLg 249 (465)
T PRK05826 185 QGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEA-SDGIMVARGDLG 249 (465)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHH-cCEEEECcchhh
Confidence 35788888653 2335556688887654378999999999999999999999 999999999864
No 195
>PRK06247 pyruvate kinase; Provisional
Probab=44.85 E-value=73 Score=32.61 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=85.8
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
+|++.+.-|++-|+|.+-..- .+++.++++.++- |+.+.++.+|.+++.++.+-.-....|-+
T Consensus 174 kD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l----------------~~~~~iiaKIEt~eav~nldeI~~~~DgI 237 (476)
T PRK06247 174 KDRADLEFALELGVDWVALSFVQRPEDVEEVRKII----------------GGRVPVMAKIEKPQAIDRLEAIVEASDAI 237 (476)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh----------------hhcCeEEEEECCHHHHHhHHHHHHHcCEE
Confidence 578889999999999655442 2345555555541 22456788999999888877666667888
Q ss_pred EEeCC-CCeeechhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecCC-----
Q 024251 137 VIDLP-DWQVIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (270)
Q Consensus 137 vv~~~-DWtiIPlENlIA-------~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~d----- 192 (270)
+|--. -.--+|+|++-. .+...+.-+|.. ..+-.|+--...+..-|+|||+|.-+.
T Consensus 238 mVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~y 317 (476)
T PRK06247 238 MVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKY 317 (476)
T ss_pred EEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCC
Confidence 88444 355677776543 222222333331 234477777888999999999999653
Q ss_pred H-HHHHHHHHhhcc
Q 024251 193 V-KAVLALKEYFDG 205 (270)
Q Consensus 193 ~-~~v~~l~~~~~~ 205 (270)
| +.|+-+.+++.+
T Consensus 318 PveaV~~m~~I~~~ 331 (476)
T PRK06247 318 PVEAVRTMARIIRQ 331 (476)
T ss_pred HHHHHHHHHHHHHH
Confidence 3 456666666643
No 196
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=44.65 E-value=27 Score=34.41 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=43.7
Q ss_pred ChhhhhhhccccCC---CceEEEeCCCCeeechhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHHhcccCeEEEe
Q 024251 119 TPQELQQLQPADGQ---AENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 119 ~~ed~e~~~~~~~~---~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a~-v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
.++|++++...... .|+++|+...=--.=.-+.|+.+... +..|++. +-++++|+.++ +.|+|||.+.
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li---~aGAD~ikVg 178 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELI---LSGADIVKVG 178 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHH---HcCCCEEEEc
Confidence 46666776665543 79999988743222222333333322 3567777 88999988655 5799999866
No 197
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.62 E-value=2.5e+02 Score=25.60 Aligned_cols=123 Identities=8% Similarity=-0.056 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc-------hhhhhhccceeeeeeeee-cCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN-------QQLAIDWSTIALLDPLFI-KEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~-------~e~a~~l~~i~~i~~l~~-~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
++.+-+..+++.|++.+++...- .+.+++.++=.++--|-. ++|.+......... .++.++-.....
T Consensus 83 rs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~-----~~~~e~~~~l~~ 157 (232)
T PRK13586 83 RDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKS-----MEVIDGIKKVNE 157 (232)
T ss_pred CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCC-----CCHHHHHHHHHh
Q ss_pred cCCCceEEEeCC--CCeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHHhcccCeEEE
Q 024251 130 DGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 130 ~~~~~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
.+-.+.++.+-. +=..=|=.+++..+......+++. +++.+|-+.+... |+||+++
T Consensus 158 ~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~~~~viasGGv~s~~Dl~~l~~~---G~~gviv 217 (232)
T PRK13586 158 LELLGIIFTYISNEGTTKGIDYNVKDYARLIRGLKEYAGGVSSDADLEYLKNV---GFDYIIV 217 (232)
T ss_pred cCCCEEEEecccccccCcCcCHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHC---CCCEEEE
No 198
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=44.17 E-value=1.5e+02 Score=24.49 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=38.9
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~ 200 (270)
..+.++++..-...=.+ .++..+.. ....++..... .+......+++.|+|+.+.+|-++.++.+..
T Consensus 45 ~~dlvild~~l~~~~g~-~~~~~lr~~~~~pvi~lt~~-~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i 112 (225)
T PRK10529 45 KPDLIILDLGLPDGDGI-EFIRDLRQWSAIPVIVLSAR-SEESDKIAALDAGADDYLSKPFGIGELQARL 112 (225)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHcCCCCCEEEEECC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 46788886543322111 22222221 23345444433 3445567899999999999999988765443
No 199
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.13 E-value=68 Score=30.29 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=34.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
..|-.+++|.+||+.+ ++.|+|-|.|++-.+++++++.+.+
T Consensus 189 ~~Igvsv~tleea~~A---~~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 189 VKIEVETETEEQVREA---VAAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred CEEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhc
Confidence 4688999999998876 4799999999887888888877654
No 200
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=43.81 E-value=70 Score=27.62 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=47.9
Q ss_pred EEEEEecChhhhhhhcccc--CCCceEEEeCCCCeeechhhhhhcccCCCceEEE---EcCCHHHHHHHHHHHhcccCeE
Q 024251 112 GSIIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGLGGI 186 (270)
Q Consensus 112 ~~~v~V~~~ed~e~~~~~~--~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a---~v~~~~eA~~~l~~LE~G~DGV 186 (270)
-..+...++++....+... +..+.+-+..++..-.| .+..+......+.. .+-+.++++ .+++.|+|+|
T Consensus 7 ~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~---~i~~l~~~~~~~~iGag~v~~~~~~~---~a~~~Ga~~i 80 (190)
T cd00452 7 VAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALE---AIRALRKEFPEALIGAGTVLTPEQAD---AAIAAGAQFI 80 (190)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHH---HHHHHHHHCCCCEEEEEeCCCHHHHH---HHHHcCCCEE
Confidence 3445666777766654443 45788888766665444 44444333222333 445555554 5567999999
Q ss_pred EEecCCHHHHHH
Q 024251 187 VLKVEDVKAVLA 198 (270)
Q Consensus 187 vl~~~d~~~v~~ 198 (270)
++.-.|++-+..
T Consensus 81 ~~p~~~~~~~~~ 92 (190)
T cd00452 81 VSPGLDPEVVKA 92 (190)
T ss_pred EcCCCCHHHHHH
Confidence 987777654433
No 201
>PLN02623 pyruvate kinase
Probab=43.75 E-value=32 Score=36.04 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=49.5
Q ss_pred CCceEEEeCC-C-CeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 132 QAENIVIDLP-D-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 132 ~~~~vvv~~~-D-WtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
..|++-+.|- + =.|..+-++++.. +....|++.+.+.+.-+-+-++++ |+|||++.+.|.+
T Consensus 291 ~vD~ialSFVr~a~DV~~~r~~l~~~-~~~~~iiakIEt~eaVeNldeIl~-g~DgImIgrgDLg 353 (581)
T PLN02623 291 KVDFYAVSFVKDAQVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIIT-ASDGAMVARGDLG 353 (581)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHc-CCcceEEEEECCHHHHHhHHHHHH-hCCEEEECcchhh
Confidence 4677777664 2 2466778888774 456789999999999999999999 9999999999864
No 202
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=43.75 E-value=60 Score=27.39 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=23.5
Q ss_pred EcCCHHHHHHHH-HHHhcccCeEEEecCCHH
Q 024251 165 ISKTPSEAQIFL-EALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 165 ~v~~~~eA~~~l-~~LE~G~DGVvl~~~d~~ 194 (270)
.+.+.++++.++ .+++.|-+|+|++..|.-
T Consensus 130 ~~~~~~~i~~~~~~~~~~g~EGlv~K~~ds~ 160 (174)
T cd07896 130 PVKSNEALDQYLDEVVAAGGEGLMLRRPDAP 160 (174)
T ss_pred eeCCHHHHHHHHHHHHhcCCCeEEEecCCCc
Confidence 356778888776 788999999999976543
No 203
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=43.66 E-value=30 Score=30.08 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~ 77 (270)
.+.+.+++|+ .+++.+..+++.|+|+|+.+
T Consensus 188 ~~G~~v~~wtvn~~~~~~~~~~~Gvd~i~TD 218 (220)
T cd08579 188 QNGKKVYVWTVNDPDDMQRYLAMGVDGIITD 218 (220)
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEeCC
Confidence 4678899999 57999999999999998854
No 204
>PTZ00300 pyruvate kinase; Provisional
Probab=43.62 E-value=38 Score=34.29 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=46.9
Q ss_pred CCCceEEEeCC-C-CeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 131 GQAENIVIDLP-D-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 131 ~~~~~vvv~~~-D-WtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
...+++.+.|= + =.+.-+-+++... +....|++...+++--+-+=+++ .|+|||++.+.|.+
T Consensus 159 ~gvd~I~~SfVrsaeDv~~vr~~l~~~-~~~~~IiaKIEt~eav~nldeI~-~~~DgImVaRGDLg 222 (454)
T PTZ00300 159 QGVDMIFASFIRSAEQVGEVRKALGAK-GGDIMIICKIENHQGVQNIDSII-EESDGIMVARGDLG 222 (454)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhc-CCCceEEEEECCHHHHHhHHHHH-HhCCEEEEecchhh
Confidence 35888888764 1 1244555555442 34678999999999999999999 89999999999864
No 205
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=43.42 E-value=16 Score=36.06 Aligned_cols=34 Identities=32% Similarity=0.506 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHh
Q 024251 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (270)
Q Consensus 169 ~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~ 202 (270)
...-+++-.+||.|+|+|++.++|.+.+++|.++
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i 46 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDEEDVERVRELGRI 46 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCe
Confidence 3456677889999999999999988888877653
No 206
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=43.32 E-value=46 Score=31.79 Aligned_cols=48 Identities=6% Similarity=0.117 Sum_probs=32.3
Q ss_pred hhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHh
Q 024251 150 NIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (270)
Q Consensus 150 NlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~ 202 (270)
.++++++..+-++++ .|+++++++.+ ++.|+|||+ ||+|+.+.++.+-
T Consensus 236 ~~v~~~~~~G~~v~vWTVNd~~~~~~l---~~~GVDgIi--TD~P~~l~~~~~~ 284 (315)
T cd08609 236 LEIKELRKDNVSVNLWVVNEPWLFSLL---WCSGVSSVT--TNACQLLKDMSKP 284 (315)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHH---HhcCCCEEE--cCCHHHHHHhhhh
Confidence 356666666666555 45667776655 568999988 8889866665443
No 207
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=43.19 E-value=21 Score=35.23 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=27.4
Q ss_pred CHHHH-HHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 168 TPSEA-QIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 168 ~~~eA-~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
+-+|. +..-.+||.|+|+||..|.|.+.+++|..
T Consensus 13 ~WeekK~~it~alEaG~d~vvv~~~dvervkeLGn 47 (376)
T COG1465 13 SWEEKKKRITAALEAGVDVVVVRPADVERVKELGN 47 (376)
T ss_pred chhHhhHHHHHHHhcCCCEEEECHHHHHHHHhhCc
Confidence 44566 44556899999999999999998888765
No 208
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=43.14 E-value=6.8 Score=37.10 Aligned_cols=10 Identities=50% Similarity=1.228 Sum_probs=8.2
Q ss_pred eeEEecccee
Q 024251 231 RVCVDLCRLF 240 (270)
Q Consensus 231 RVCVDtcSmF 240 (270)
+||+|||-+|
T Consensus 175 gVClDTCH~F 184 (281)
T KOG3997|consen 175 GVCLDTCHTF 184 (281)
T ss_pred eeeHhhhhhh
Confidence 5999999843
No 209
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=43.05 E-value=2.4e+02 Score=29.14 Aligned_cols=136 Identities=10% Similarity=0.092 Sum_probs=72.7
Q ss_pred chhHHHHHHHhCCcEEEEcCcch-hhhhhccc----------------eeeeeeeeecCC--------ccccCCCCeEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQ-QLAIDWST----------------IALLDPLFIKEG--------EVYDSGDRRVGS 113 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~-e~a~~l~~----------------i~~i~~l~~~~g--------~~~~~~gk~v~~ 113 (270)
..+....+.+.|.+.++..+-.. ++...+.. ....+.++++|. ..+...|..+.
T Consensus 617 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~- 695 (919)
T PRK11107 617 EQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLPPTDESRLPLTVMAVDDNPANLKLIGALLEEQVEHVV- 695 (919)
T ss_pred chhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhcccccccccccccccCCCeEEEEeCCHHHHHHHHHHHHHcCCEEE-
Confidence 45666788899999988776432 22222211 111233555665 22344454322
Q ss_pred EEEecChhhhhhhccccCCCceEEEeCCCCee--echhhhhhcc-cCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 114 IIEVSTPQELQQLQPADGQAENIVIDLPDWQV--IPAENIVASF-QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 114 ~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWti--IPlENlIA~~-q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
...+.++.-.... ....|.++++..-+.. +-+-..|.+. ......|++..... .......+++.|+|+++.+|
T Consensus 696 --~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~~-~~~~~~~~~~~G~~~~l~KP 771 (919)
T PRK11107 696 --LCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAHA-MAGERERLLSAGMDDYLAKP 771 (919)
T ss_pred --EECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCCC-CHHHHHHHHHcCCCeEeeCC
Confidence 3344443222221 2347888886553322 2222222221 12345566655443 34456788999999999999
Q ss_pred CCHHHHHHH
Q 024251 191 EDVKAVLAL 199 (270)
Q Consensus 191 ~d~~~v~~l 199 (270)
-++.++...
T Consensus 772 ~~~~~L~~~ 780 (919)
T PRK11107 772 IDEAMLKQV 780 (919)
T ss_pred CCHHHHHHH
Confidence 998876543
No 210
>smart00654 eIF6 translation initiation factor 6.
Probab=42.89 E-value=58 Score=29.42 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=44.2
Q ss_pred CeEEEecC-CHHHHHHHHHhhccccccccceeeeEEEEEEEEeccccceeEEeccceeEEeeccccC
Q 024251 184 GGIVLKVE-DVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCRLFLVHSECLES 249 (270)
Q Consensus 184 DGVvl~~~-d~~~v~~l~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcSmFLVhsEt~e~ 249 (270)
-|.+++|+ +.++++.+.+++ +++....||-.+.-||+| ||=+-...|||.+|.+-
T Consensus 109 ~g~lvhp~~s~ee~~~i~d~L--------~V~v~~gTi~G~~~VGs~---~VannkG~lv~~~tt~~ 164 (200)
T smart00654 109 HGALASPDLSKETEEIISDVL--------GVEVFRGTIAGNITVGSY---CVVTNKGGLVHPDTSEE 164 (200)
T ss_pred ceEEECCCCCHHHHHHHHHHh--------CCeEEEEEecCcccceEE---EEEECCEEEECCCCCHH
Confidence 37889998 567889999988 588899999999999995 44455588999998643
No 211
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=42.82 E-value=59 Score=31.30 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=35.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
.+|=.+|.|++|++ ++|+.|+|=|+|+-=+|+++++..+.+
T Consensus 189 ~kIEVEvesle~~~---eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 189 KKIEVEVESLEEAE---EALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred ceEEEEcCCHHHHH---HHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 46899999999987 567889999999999999998887774
No 212
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=42.65 E-value=91 Score=25.34 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=39.1
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~ 200 (270)
..+.++++..-...-.+ .++..++. ....++... +..+......+++.|++|++..|.+..++.+..
T Consensus 44 ~~d~vild~~~~~~~~~-~~~~~i~~~~~~~~ii~lt-~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i 112 (221)
T PRK15479 44 MYALAVLDINMPGMDGL-EVLQRLRKRGQTLPVLLLT-ARSAVADRVKGLNVGADDYLPKPFELEELDARL 112 (221)
T ss_pred CCCEEEEeCCCCCCcHH-HHHHHHHhcCCCCCEEEEE-CCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHH
Confidence 45777775432222222 22333222 234455443 334455567789999999999999988775543
No 213
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=42.50 E-value=49 Score=31.37 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=33.6
Q ss_pred ceEEEEcCCHHH-HHHHHHHHhc---ccCeEEEecC------CHHHHHHHHHhhcc
Q 024251 160 KTVFAISKTPSE-AQIFLEALEQ---GLGGIVLKVE------DVKAVLALKEYFDG 205 (270)
Q Consensus 160 ~~i~a~v~~~~e-A~~~l~~LE~---G~DGVvl~~~------d~~~v~~l~~~~~~ 205 (270)
.++..++.+.++ +.-++++++. |+|+|+|+.- .+.+++++++.++.
T Consensus 185 ~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~ 240 (302)
T cd01571 185 VPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDI 240 (302)
T ss_pred CCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 479999999983 5545555555 6999999984 46667888887754
No 214
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=42.17 E-value=69 Score=30.37 Aligned_cols=135 Identities=14% Similarity=0.231 Sum_probs=76.7
Q ss_pred EEEEeC--chhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccCCCCeEEEEEEecChhh
Q 024251 53 VWIWTE--SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (270)
Q Consensus 53 vWiw~~--~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~--~l~~~~g~~~~~~gk~v~~~v~V~~~ed 122 (270)
|.+-.+ +-+.+..||+.|++.++++.-+ .+..+++-.++.-. ++-.+=|.+...++..++.- ..+++|+
T Consensus 80 V~lHLDH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s-~~t~pee 158 (293)
T PRK07315 80 VAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG-ELAPIED 158 (293)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc-CCCCHHH
Confidence 666443 6679999999999999998532 34444444332211 11222233332222222221 1378998
Q ss_pred hhhhccccCCCceEEEe-------CCC-CeeechhhhhhcccC-C-CceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 123 LQQLQPADGQAENIVID-------LPD-WQVIPAENIVASFQG-S-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 123 ~e~~~~~~~~~~~vvv~-------~~D-WtiIPlENlIA~~q~-~-~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..++. . ...|++-+. +.. -+.|-+|.|= +++. . +.-|++.=.|--.-.-+-.+.+.|+++|-+.++
T Consensus 159 a~~f~-~-tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~-~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~ 234 (293)
T PRK07315 159 AKAMV-E-TGIDFLAAGIGNIHGPYPENWEGLDLDHLE-KLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTE 234 (293)
T ss_pred HHHHH-H-cCCCEEeeccccccccCCCCCCcCCHHHHH-HHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccH
Confidence 87777 3 468888886 333 2346666442 2222 2 234555555222223456678999999999987
No 215
>PRK10537 voltage-gated potassium channel; Provisional
Probab=41.64 E-value=2.1e+02 Score=28.22 Aligned_cols=71 Identities=13% Similarity=-0.034 Sum_probs=43.7
Q ss_pred EEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhh----cccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 113 ~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA----~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
+....++++.++++-. .+++.+++...| .-+|+.+ +-.+.+.++++.+++.+.++.+ .+.|+|-|+-
T Consensus 285 I~GD~td~e~L~~AgI--~~A~aVI~~t~d----D~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L---~~~GaD~VIs 355 (393)
T PRK10537 285 IPGDSSDSAVLKKAGA--ARARAILALRDN----DADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKI---KRVHPDMIFS 355 (393)
T ss_pred EEeCCCCHHHHHhcCc--ccCCEEEEcCCC----hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHH---HhcCCCEEEC
Confidence 3434455555554443 356777775554 3445433 2223457999999999988776 4579999775
Q ss_pred ecCC
Q 024251 189 KVED 192 (270)
Q Consensus 189 ~~~d 192 (270)
+.+.
T Consensus 356 p~~l 359 (393)
T PRK10537 356 PQLL 359 (393)
T ss_pred HHHH
Confidence 5443
No 216
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=41.63 E-value=45 Score=31.86 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=37.3
Q ss_pred CCeeechhhhhhcccCCCceEEEE-cCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 142 DWQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 142 DWtiIPlENlIA~~q~~~~~i~a~-v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
+|+.+- +.++++++..+-++.+- |+++++++.++ +.|+|||+ ||.|+.+.++.+
T Consensus 229 ~~~~l~-~~~v~~a~~~Gl~V~vWTVNd~~~~~~l~---~~GVDgIi--TD~P~~l~~~~~ 283 (316)
T cd08610 229 AYKKLF-SNDIRDYKAANIHTNVYVINEPWLFSLAW---CSGIHSVT--TNNIHLLKQLDH 283 (316)
T ss_pred chhhCC-HHHHHHHHHCCCEEEEECCCCHHHHHHHH---hCCcCEEE--eCCHHHHHHhhc
Confidence 445443 57788887777776664 78888877554 57999976 777886655443
No 217
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=41.48 E-value=1.8e+02 Score=24.02 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=39.6
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++......=.+ .++..++. ....++.... ..+......+++.|+|+.+.+|-++.++.+.
T Consensus 43 ~~~dlvild~~l~~~~g~-~l~~~lr~~~~~~pii~ls~-~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~ 111 (223)
T PRK10816 43 HLPDIAIVDLGLPDEDGL-SLIRRWRSNDVSLPILVLTA-RESWQDKVEVLSAGADDYVTKPFHIEEVMAR 111 (223)
T ss_pred CCCCEEEEECCCCCCCHH-HHHHHHHhcCCCCCEEEEEc-CCCHHHHHHHHHcCCCeeEeCCCCHHHHHHH
Confidence 346778875443322112 23333322 2344555443 3444556789999999999999998876543
No 218
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=41.47 E-value=2.4e+02 Score=24.50 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=45.4
Q ss_pred CCCCeeechhhhhhcccCCCceEEEEcCCHH-----HHHHHHHHHh-cc-cCeEEEecCCHHHHHHHHHhh
Q 024251 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPS-----EAQIFLEALE-QG-LGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 140 ~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~-----eA~~~l~~LE-~G-~DGVvl~~~d~~~v~~l~~~~ 203 (270)
+.+-++--||.+++.+.+.+..+.-+.++.. =.+.++..++ .| .+-|++..-|+..++.+++..
T Consensus 77 ~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~ 147 (220)
T cd08579 77 GHGAKIPSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLD 147 (220)
T ss_pred CCCCcCCCHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHC
Confidence 3455677799999998766678898888764 1333444443 45 367889999999888877654
No 219
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=40.97 E-value=76 Score=27.94 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=41.2
Q ss_pred cChhhhhhhccc--cCCCceEEEeCCC-CeeechhhhhhcccCCCceEEEEc----CCHHHH-HHHHHHHhcccCeEEEe
Q 024251 118 STPQELQQLQPA--DGQAENIVIDLPD-WQVIPAENIVASFQGSGKTVFAIS----KTPSEA-QIFLEALEQGLGGIVLK 189 (270)
Q Consensus 118 ~~~ed~e~~~~~--~~~~~~vvv~~~D-WtiIPlENlIA~~q~~~~~i~a~v----~~~~eA-~~~l~~LE~G~DGVvl~ 189 (270)
.+++++++++.. ...+|++-+.+.. .+. ++.+++.. +..+++.- .|++++ +.+-++++.|++||++-
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~--~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTGDAES--FKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCCCHHH--HHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 345666653222 1357888885431 111 34444432 33455532 344443 34567789999999864
Q ss_pred -----cCCHHH-HHHHHH
Q 024251 190 -----VEDVKA-VLALKE 201 (270)
Q Consensus 190 -----~~d~~~-v~~l~~ 201 (270)
.+||.+ ++++++
T Consensus 215 ~~i~~~~dp~~~~~~~~~ 232 (235)
T cd00958 215 RNIFQRPDPVAMLRAISA 232 (235)
T ss_pred hhhhcCCCHHHHHHHHHH
Confidence 445543 344443
No 220
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=40.90 E-value=9.1 Score=37.38 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=66.4
Q ss_pred hHHHHHHHhCCcEEEEcCcchhhhhhccceeeeee---eeecCC----------ccccCCCCeEEEEEEecChhhhhhhc
Q 024251 61 QVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFIKEG----------EVYDSGDRRVGSIIEVSTPQELQQLQ 127 (270)
Q Consensus 61 e~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~---l~~~~g----------~~~~~~gk~v~~~v~V~~~ed~e~~~ 127 (270)
|-.-++||.|-+++++++.-......+-.+ +++ ++..+. ..++.-|..+ .++...+.++++.+.
T Consensus 61 e~~la~Le~g~~a~~~~SGmaAi~~~l~~l--l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v-~~~d~~d~~~l~~~l 137 (386)
T PF01053_consen 61 EQRLAALEGGEDALLFSSGMAAISAALLAL--LKPGDHIVASDDLYGGTYRLLEELLPRFGVEV-TFVDPTDLEALEAAL 137 (386)
T ss_dssp HHHHHHHHT-SEEEEESSHHHHHHHHHHHH--S-TTBEEEEESSSSHHHHHHHHHCHHHTTSEE-EEESTTSHHHHHHHH
T ss_pred HHHHHHhhcccceeeccchHHHHHHHHHhh--cccCCceEecCCccCcchhhhhhhhcccCcEE-EEeCchhHHHHHhhc
Confidence 444589999999999998643332222222 111 222222 2334456553 333444455554433
Q ss_pred cccCCCceEEEeCC---CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccC
Q 024251 128 PADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (270)
Q Consensus 128 ~~~~~~~~vvv~~~---DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~D 184 (270)
.. +.+.|.++.. ..+++.++.|.+.++..+ .+...|.|.=-.-..+..|+.|+|
T Consensus 138 ~~--~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g-~~~~vVDnT~atp~~~~pL~~GaD 194 (386)
T PF01053_consen 138 RP--NTKLVFLESPSNPTLEVPDLEAIAKLAKEHG-DILVVVDNTFATPYNQNPLELGAD 194 (386)
T ss_dssp CT--TEEEEEEESSBTTTTB---HHHHHHHHHHTT-T-EEEEECTTTHTTTC-GGGGT-S
T ss_pred cc--cceEEEEEcCCCcccccccHHHHHHHHHHhC-CceEEeeccccceeeeccCcCCce
Confidence 32 5677888775 578999999988776554 477777777666688889999998
No 221
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=40.75 E-value=17 Score=35.89 Aligned_cols=30 Identities=37% Similarity=0.572 Sum_probs=25.4
Q ss_pred HHHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 172 AQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 172 A~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
-+++-.+||.|+|||++.++|.+.+++|.+
T Consensus 15 k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~ 44 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDDEDVEKVRELGR 44 (354)
T ss_pred HHHHHHHHHcCCCEEEECHhHhhhhhccce
Confidence 567778999999999999998888877655
No 222
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=40.44 E-value=97 Score=28.37 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=43.1
Q ss_pred CCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcC--CHHHHHHHH-HHHhcccCeEEEe-----cCCHH-HHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISK--TPSEAQIFL-EALEQGLGGIVLK-----VEDVK-AVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~--~~~eA~~~l-~~LE~G~DGVvl~-----~~d~~-~v~~l 199 (270)
..+|++=.. |. -+++.+=...+ .-+...+...+ |.+++..++ .+++.|++|+..- .+||. .+++|
T Consensus 172 ~GAD~vKt~---~~-~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l 247 (267)
T PRK07226 172 LGADIVKTN---YT-GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAI 247 (267)
T ss_pred HCCCEEeeC---CC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHH
Confidence 357888554 32 13343322222 23455666677 888887775 7889999999754 44654 46666
Q ss_pred HHhhcc
Q 024251 200 KEYFDG 205 (270)
Q Consensus 200 ~~~~~~ 205 (270)
+.++..
T Consensus 248 ~~~v~~ 253 (267)
T PRK07226 248 SAVVHE 253 (267)
T ss_pred HHHHhC
Confidence 766644
No 223
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=40.38 E-value=1.4e+02 Score=27.35 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=59.6
Q ss_pred hhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCC
Q 024251 60 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~ 133 (270)
-+.+..||+.|++.+.+...+ .++++++..+.. +.++.+-|.+.-++-. + ..+
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~-----------------~~~v~liINd~~dlA~---~-~~A 82 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQ-----------------KYGVPLIINDRVDLAL---A-VGA 82 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHH-----------------HhCCeEEecCcHHHHH---h-CCC
Confidence 478999999999999988643 234444444422 1123334444333222 1 235
Q ss_pred ceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 134 ~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
+-|=+-..| .|++...+-+ +.+-.|-..++|.+||+. +.+.|+|=|.+-|
T Consensus 83 dGVHlGq~D---~~~~~ar~~~-~~~~iIG~S~h~~eea~~---A~~~g~DYv~~Gp 132 (211)
T COG0352 83 DGVHLGQDD---MPLAEARELL-GPGLIIGLSTHDLEEALE---AEELGADYVGLGP 132 (211)
T ss_pred CEEEcCCcc---cchHHHHHhc-CCCCEEEeecCCHHHHHH---HHhcCCCEEEECC
Confidence 556663333 4555555443 233456677888888764 5667899887743
No 224
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=40.27 E-value=35 Score=30.87 Aligned_cols=30 Identities=7% Similarity=-0.031 Sum_probs=24.9
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~ 77 (270)
...+.+++|| .+++.|...++.|+|+++.+
T Consensus 221 ~~g~~v~~WTVn~~~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 221 KANISVNLYVVNEPWLYSLLWCSGVQSVTTN 251 (252)
T ss_pred HCCCEEEEEccCCHHHHHHHHHcCCCEEecC
Confidence 3567799999 56899999999999998853
No 225
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.21 E-value=77 Score=27.76 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=46.1
Q ss_pred EEEEecChhhhhhhcccc--CCCceEEEeCCCCeeechhhhhhcccCC--CceE-EEEcCCHHHHHHHHHHHhcccCeEE
Q 024251 113 SIIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGS--GKTV-FAISKTPSEAQIFLEALEQGLGGIV 187 (270)
Q Consensus 113 ~~v~V~~~ed~e~~~~~~--~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i-~a~v~~~~eA~~~l~~LE~G~DGVv 187 (270)
..+...++++........ +....+-+..++.+- +.+++.+... .+++ ...+-+.++++.+ ++.|+|||+
T Consensus 16 ~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A---~~~gAdgv~ 89 (187)
T PRK07455 16 AVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKLPECIIGTGTILTLEDLEEA---IAAGAQFCF 89 (187)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhCCCcEEeEEEEEcHHHHHHH---HHcCCCEEE
Confidence 344566777666544433 446677776666643 3344333222 2222 2355556888876 567999999
Q ss_pred EecCCHHHH
Q 024251 188 LKVEDVKAV 196 (270)
Q Consensus 188 l~~~d~~~v 196 (270)
..-.|++.+
T Consensus 90 ~p~~~~~~~ 98 (187)
T PRK07455 90 TPHVDPELI 98 (187)
T ss_pred CCCCCHHHH
Confidence 888887644
No 226
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=39.99 E-value=42 Score=28.50 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHHHHhcccCeEEEecC-CHHHHHHHHHhhcc
Q 024251 173 QIFLEALEQGLGGIVLKVE-DVKAVLALKEYFDG 205 (270)
Q Consensus 173 ~~~l~~LE~G~DGVvl~~~-d~~~v~~l~~~~~~ 205 (270)
+.++-.||||+-=|.-+|+ +++++++|+++++.
T Consensus 41 e~~VH~LEHGaV~i~Y~p~~~~~~v~~L~~l~~~ 74 (130)
T PF11303_consen 41 ERAVHNLEHGAVWITYDPCLPPDQVAKLKALAKS 74 (130)
T ss_pred HHHHHhhhcCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 4456679999999999999 88999999998865
No 227
>PRK07695 transcriptional regulator TenI; Provisional
Probab=39.93 E-value=2.5e+02 Score=24.27 Aligned_cols=100 Identities=10% Similarity=0.041 Sum_probs=56.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCC
Q 024251 60 KQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~------e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~ 133 (270)
.+... ++++|++.+.++..+. ++++++.+. |.. +..+-|.+.-++.... ..
T Consensus 18 ~~~~~-~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~~-----------------~~~-~~~liin~~~~la~~~----~~ 74 (201)
T PRK07695 18 VAVAM-QIHSEVDYIHIREREKSAKELYEGVESLLKK-----------------GVP-ASKLIINDRVDIALLL----NI 74 (201)
T ss_pred HHHHH-HHhCCCCEEEEcCCCCCHHHHHHHHHHHHHh-----------------CCC-CCeEEEECHHHHHHHc----CC
Confidence 34554 8999999999986431 122222221 111 1234455544322211 23
Q ss_pred ceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 134 ~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
+-+-+...| .|++.+...+. +..|-+.+.+.++++ ++.+.|+|-|++.+
T Consensus 75 ~gvHl~~~~---~~~~~~r~~~~--~~~ig~s~~s~e~a~---~a~~~Gadyi~~g~ 123 (201)
T PRK07695 75 HRVQLGYRS---FSVRSVREKFP--YLHVGYSVHSLEEAI---QAEKNGADYVVYGH 123 (201)
T ss_pred CEEEeCccc---CCHHHHHHhCC--CCEEEEeCCCHHHHH---HHHHcCCCEEEECC
Confidence 445554433 35565555442 446888888988865 46688999998754
No 228
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.92 E-value=2.3e+02 Score=27.01 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=59.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC-hhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~-~ed~e~~~~~~~~~~~vvv 138 (270)
-..+..|-|+|+|++++++=-.|...++..... ..|-....++.-++ .+-++.++... +.-...+
T Consensus 112 e~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~-------------~~gi~~I~lvaPtt~~~rl~~i~~~a-~GFiY~v 177 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE-------------KHGIDPIFLVAPTTPDERLKKIAEAA-SGFIYYV 177 (265)
T ss_pred HHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH-------------HcCCcEEEEeCCCCCHHHHHHHHHhC-CCcEEEE
Confidence 346889999999999998522333333332211 11222222222233 34444444432 2222222
Q ss_pred eC---CCCeee---chhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 139 DL---PDWQVI---PAENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 139 ~~---~DWtiI---PlENlIA~~q~~-~~~i~--a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.. ++-+.- ++..+|..+..- +..|+ -.++++++|+.+.++ +|||++-+.
T Consensus 178 s~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~----ADGVIVGSA 235 (265)
T COG0159 178 SRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA----ADGVIVGSA 235 (265)
T ss_pred ecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh----CCeEEEcHH
Confidence 12 122222 366777766542 22333 357888888876655 999999775
No 229
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=39.82 E-value=86 Score=26.97 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=20.1
Q ss_pred cEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 51 KRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 51 K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
..+.+-. +..+.+..+.+.|+|++.+..+
T Consensus 64 ~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 64 LDVHLMVENPDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred EEEEeeeCCHHHHHHHHHHcCCCEEEEeec
Confidence 3354544 3455678888999999888764
No 230
>PRK15447 putative protease; Provisional
Probab=39.09 E-value=91 Score=29.29 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=55.7
Q ss_pred cChhhhhhhccccCCCceEEEeCCC------CeeechhhhhhcccCCCceEEEEcCC----HHHHHHHHHHHhcccCeEE
Q 024251 118 STPQELQQLQPADGQAENIVIDLPD------WQVIPAENIVASFQGSGKTVFAISKT----PSEAQIFLEALEQGLGGIV 187 (270)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~D------WtiIPlENlIA~~q~~~~~i~a~v~~----~~eA~~~l~~LE~G~DGVv 187 (270)
.+.+++-.+.... .+|-|.+.... |+.=-+...+..++..+.+|+..... .+|-+.+...++.|+|||+
T Consensus 15 ~~~~~~~~~~~~~-gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~ 93 (301)
T PRK15447 15 ETVRDFYQRAADS-PVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVE 93 (301)
T ss_pred CCHHHHHHHHHcC-CCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEE
Confidence 3445544433332 37777774333 77777788888888888888876644 4577888889999999877
Q ss_pred EecCCHHHHHHHHH
Q 024251 188 LKVEDVKAVLALKE 201 (270)
Q Consensus 188 l~~~d~~~v~~l~~ 201 (270)
+ .|++.+.-+++
T Consensus 94 v--~d~g~l~~~~e 105 (301)
T PRK15447 94 A--NDLGAVRLLAE 105 (301)
T ss_pred E--eCHHHHHHHHh
Confidence 4 67887766665
No 231
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=39.09 E-value=2.2e+02 Score=26.75 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=76.7
Q ss_pred chhHHHHHHHhCCcEEEEcCc------chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC
Q 024251 59 SKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~------~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~ 132 (270)
-.++...--+.|+.++=|-.| +.+..+...+... -|+.-+|. |-++.++.++.. .+
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~-~PvL~KDF---------------Iid~~QI~ea~~--~G 124 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELK-IPVLRKDF---------------ILDEIQIREARA--FG 124 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcC-CCEEeccc---------------cCCHHHHHHHHH--cC
Confidence 456777777888998654432 1233333332211 14343433 457777666665 35
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHH
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKA 195 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~ 195 (270)
++-|++...--+--=|++++..++.-+-..+.+|.|.+|++.++ +.|++-|-+..+|...
T Consensus 125 ADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~---~~ga~iiGINnRdL~t 184 (247)
T PRK13957 125 ASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLAL---DCGAEIIGINTRDLDT 184 (247)
T ss_pred CCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHH---hCCCCEEEEeCCCCcc
Confidence 66666656544433589999998888899999999999999865 4699999999987653
No 232
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=39.00 E-value=59 Score=29.58 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=32.0
Q ss_pred hhhhhcccCCCceEEEE-c--CCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 149 ENIVASFQGSGKTVFAI-S--KTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 149 ENlIA~~q~~~~~i~a~-v--~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
+.++..++..+-.|++- + +++++++.++ +.|+|||+ +|.|+.+.+
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~n~~~~~~~l~---~~GVdgIi--TD~p~~~~~ 282 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLNNDPENAKTQV---KAGVDAVI--VDSVLAIRR 282 (286)
T ss_pred hHHHHHHHHCCcEEEEECCccCCHHHHHHHH---HcCCCEEE--ECCHHHHHH
Confidence 45677777667677664 4 7788877554 57999987 888886654
No 233
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=38.77 E-value=2.2e+02 Score=23.91 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=39.9
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++......-.+ .++..+.. ....++..... .+......+++.|+|+++.+|-+..++.+.
T Consensus 48 ~~~dlvild~~l~~~~g~-~~~~~lr~~~~~~pii~ls~~-~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~ 116 (239)
T PRK09468 48 ESFHLMVLDLMLPGEDGL-SICRRLRSQNNPTPIIMLTAK-GEEVDRIVGLEIGADDYLPKPFNPRELLAR 116 (239)
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCEEEEECC-CcHHHHHHHHhcCCCeEEECCCCHHHHHHH
Confidence 346778886544333222 22222222 23456655443 334455778999999999999998876543
No 234
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=38.68 E-value=2.2e+02 Score=25.49 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=64.4
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc---chhh----hhhccceeeeeeeeecCC-ccccCCCCeEEEEEEecChh
Q 024251 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQL----AIDWSTIALLDPLFIKEG-EVYDSGDRRVGSIIEVSTPQ 121 (270)
Q Consensus 52 ~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~---~~e~----a~~l~~i~~i~~l~~~~g-~~~~~~gk~v~~~v~V~~~e 121 (270)
.+|+-- ++.+-+...|+.|++.+++... +.+. ++..++=.++--|-..+| +.+...++... . .+++
T Consensus 75 ~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~---~-~~~~ 150 (229)
T PF00977_consen 75 PIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESS---G-IDLE 150 (229)
T ss_dssp EEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEE---E-EEHH
T ss_pred cEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccC---C-cCHH
Confidence 355533 5899999999999999998763 2233 334443233333444555 44433333210 1 1233
Q ss_pred hhhhhccccCCCceEEEeCCCC----eeechhh---hhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 122 ELQQLQPADGQAENIVIDLPDW----QVIPAEN---IVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 122 d~e~~~~~~~~~~~vvv~~~DW----tiIPlEN---lIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
++-......+ ...+|+..-|. +=+.+|. +.+.. +..+++ .+++.+|-+.+. +.|+||+++.
T Consensus 151 ~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~---~~G~~gvivg 220 (229)
T PF00977_consen 151 EFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELK---KAGIDGVIVG 220 (229)
T ss_dssp HHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHH---HTTECEEEES
T ss_pred HHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHH---HCCCcEEEEe
Confidence 3222223333 34444433211 1133433 33332 445665 488999988877 9999999975
No 235
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=38.67 E-value=1.7e+02 Score=28.72 Aligned_cols=102 Identities=16% Similarity=0.216 Sum_probs=57.7
Q ss_pred hhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCC
Q 024251 60 KQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~------e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~ 133 (270)
-+.+..+|+.|++.|.....+. +.++++..+.. . .+..+-|.+.-|+-... .+
T Consensus 160 l~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~-------------~----~~~~lIIND~vdlAl~~----~a 218 (347)
T PRK02615 160 LEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCH-------------R----YGALFIVNDRVDIALAV----DA 218 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHH-------------H----hCCeEEEeChHHHHHHc----CC
Confidence 4579999999999998875432 33444444311 0 11233445544322221 23
Q ss_pred ceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 134 ~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
+-|=+...| .|.+..-..+ +.+.-|-+.+.|++|++.+ .+.|+|-|.+.
T Consensus 219 DGVHLgq~d---l~~~~aR~ll-g~~~iIG~S~Hs~~e~~~A---~~~GaDYI~lG 267 (347)
T PRK02615 219 DGVHLGQED---LPLAVARQLL-GPEKIIGRSTTNPEEMAKA---IAEGADYIGVG 267 (347)
T ss_pred CEEEeChhh---cCHHHHHHhc-CCCCEEEEecCCHHHHHHH---HHcCCCEEEEC
Confidence 445553334 3554443322 3344567888898887554 57899999873
No 236
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=38.40 E-value=46 Score=32.27 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=34.1
Q ss_pred eechhhhhhcccCCCceEEE-EcCC---------HHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 145 VIPAENIVASFQGSGKTVFA-ISKT---------PSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 145 iIPlENlIA~~q~~~~~i~a-~v~~---------~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
.++..+++++++..+-.|++ .+++ +++++.++- .+.|+|||+ ++.|+.+.+
T Consensus 289 ~~~~~~~v~~ah~~Gl~V~~WTVn~~~~~~~~~d~~~~~~~~~-~~~GVDGIi--TD~P~~~~~ 349 (355)
T PRK11143 289 NIKLTGMVKEAHQAKLVVHPYTVRADQLPEYATDVNQLYDILY-NQAGVDGVF--TDFPDKAVK 349 (355)
T ss_pred ccChHHHHHHHHHcCCEEEEEEeccccchhhhcChHHHHHHHH-HccCCCEEE--cCChHHHHH
Confidence 34556899999888877655 4443 455543321 188999999 888886543
No 237
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.20 E-value=3e+02 Score=24.72 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=22.5
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDW 87 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~---~~e~a~~l 87 (270)
.+.+-+..+++.|++.+++... +.+..+++
T Consensus 84 ~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei 116 (253)
T PRK02083 84 RSVEDARRLLRAGADKVSINSAAVANPELISEA 116 (253)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHH
Confidence 5788999999999999999863 33444444
No 238
>PRK09581 pleD response regulator PleD; Reviewed
Probab=38.08 E-value=1.9e+02 Score=26.70 Aligned_cols=64 Identities=11% Similarity=0.213 Sum_probs=37.9
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~ 197 (270)
+.+.++++..-+..=.+ .++..++. ..+.++.. ...++-..+.++++.|+++.+++|-++.++.
T Consensus 198 ~~d~vi~d~~~p~~~g~-~l~~~i~~~~~~~~~~ii~l-s~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~ 265 (457)
T PRK09581 198 NYDLVIVSANFENYDPL-RLCSQLRSKERTRYVPILLL-VDEDDDPRLVKALELGVNDYLMRPIDKNELL 265 (457)
T ss_pred CCCEEEecCCCCCchHh-HHHHHHHhccccCCCcEEEE-eCCCChHHHHHHHHccchhhhhCCCcHHHHH
Confidence 35666664432222122 34555542 22333333 3445666677889999999999998888754
No 239
>PRK14725 pyruvate kinase; Provisional
Probab=37.92 E-value=1.1e+02 Score=32.35 Aligned_cols=133 Identities=11% Similarity=0.057 Sum_probs=74.2
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeEEEEEEecChhhhhhhccccCC---
Q 024251 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQ--- 132 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~v~V~~~ed~e~~~~~~~~--- 132 (270)
+|++.+.-+++- +|.|-..- .+++.++++.++ +++. +..++++.+|.+++.++.+..-+..
T Consensus 433 kD~~dl~f~~~~-vD~ValSFVrs~~DV~~lr~~-------------L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~ 498 (608)
T PRK14725 433 KDLEDLAFVAKH-ADIVALSFVRSPEDVRLLLDA-------------LEKLGADDLGVVLKIETRRAFENLPRILLEAMR 498 (608)
T ss_pred HHHHHHHHHHHh-CCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCcEEEEECCHHHHHHHHHHHHhhcc
Confidence 467777778888 88544331 123444444333 1111 2356788899999888876654433
Q ss_pred --CceEEEeCCCCe-eechhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 133 --AENIVIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 133 --~~~vvv~~~DWt-iIPlENl-------IA~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.|-|+|--.|=- =||+|+| |......+.-+|.. ..+-.|+--+..+. |+|+|+|...
T Consensus 499 ~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS~G 576 (608)
T PRK14725 499 HPRFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLNKG 576 (608)
T ss_pred CCCcEEEEECCccccccCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeecCC
Confidence 477777444433 3676665 22333333334331 11223333333333 9999999955
Q ss_pred C--HHHHHHHHHhhccc
Q 024251 192 D--VKAVLALKEYFDGR 206 (270)
Q Consensus 192 d--~~~v~~l~~~~~~~ 206 (270)
. .+.|+-|.+++.+.
T Consensus 577 ~yPveAV~~l~~I~~r~ 593 (608)
T PRK14725 577 PHIVEAVRVLDDILRRM 593 (608)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 3 35677777777553
No 240
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=37.90 E-value=45 Score=27.39 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~ 77 (270)
+..+.+++|+ .+++.+..++..|+|+++.+
T Consensus 158 ~~g~~v~~wtvn~~~~~~~~~~~GVdgI~TD 188 (189)
T cd08556 158 AAGLKVYVWTVNDPEDARRLLALGVDGIITD 188 (189)
T ss_pred HcCCEEEEEcCCCHHHHHHHHHCCCCEEecC
Confidence 5677899999 57999999999999998853
No 241
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=37.66 E-value=1.4e+02 Score=20.95 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 170 SEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 170 ~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
.........++.|+++++..|-+..++.+
T Consensus 90 ~~~~~~~~~~~~g~~~~i~~p~~~~~l~~ 118 (129)
T PRK10610 90 AKKENIIAAAQAGASGYVVKPFTAATLEE 118 (129)
T ss_pred CCHHHHHHHHHhCCCeEEECCCCHHHHHH
Confidence 34445678889999999999998876543
No 242
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=37.66 E-value=2.9e+02 Score=24.45 Aligned_cols=128 Identities=13% Similarity=0.038 Sum_probs=59.5
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhh----hccceeeeeeeeecCCccccCCCCeEEEEE-EecChhhhhhhccc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAI----DWSTIALLDPLFIKEGEVYDSGDRRVGSII-EVSTPQELQQLQPA 129 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~---~~e~a~----~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v-~V~~~ed~e~~~~~ 129 (270)
.+-+-+...++.|++.+++... +.+... ++++=+++-.+-++.+... +..+.+.. .-.+..+....+..
T Consensus 81 ~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~---~~~v~~~~~~~~~~~~~~~~~~~ 157 (243)
T cd04731 81 RSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDG---GYEVYTHGGRKPTGLDAVEWAKE 157 (243)
T ss_pred CCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCC---ceEEEEcCCceecCCCHHHHHHH
Confidence 4678888999999999998753 233333 3321112222222211100 00111000 00111121222221
Q ss_pred --cCCCceEEEeCCCC----eeechhhhhhccc-CCCceEEEE--cCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 130 --DGQAENIVIDLPDW----QVIPAENIVASFQ-GSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 130 --~~~~~~vvv~~~DW----tiIPlENlIA~~q-~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
....+.+++...+- +-+.+|- +.++. ..+..+++. +.++++++-+++. .|+|||++..-
T Consensus 158 l~~~G~d~i~v~~i~~~g~~~g~~~~~-i~~i~~~~~~pvia~GGi~~~~di~~~l~~--~g~dgv~vg~a 225 (243)
T cd04731 158 VEELGAGEILLTSMDRDGTKKGYDLEL-IRAVSSAVNIPVIASGGAGKPEHFVEAFEE--GGADAALAASI 225 (243)
T ss_pred HHHCCCCEEEEeccCCCCCCCCCCHHH-HHHHHhhCCCCEEEeCCCCCHHHHHHHHHh--CCCCEEEEeHH
Confidence 13467777754331 1223332 33222 224455554 6788887765442 49999998543
No 243
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=37.65 E-value=37 Score=32.18 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=28.8
Q ss_pred chhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec-----CCHHHH
Q 024251 147 PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (270)
Q Consensus 147 PlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~~~v 196 (270)
.|+.|+.++ +-..-|=+.+.++++|. .++|.|+|||++.+ .||..+
T Consensus 166 ~l~~i~~~~-~vPvIvDAGiG~pSdaa---~AMElG~daVLvNTAiA~A~dPv~M 216 (247)
T PF05690_consen 166 NLRIIIERA-DVPVIVDAGIGTPSDAA---QAMELGADAVLVNTAIAKAKDPVAM 216 (247)
T ss_dssp HHHHHHHHG-SSSBEEES---SHHHHH---HHHHTT-SEEEESHHHHTSSSHHHH
T ss_pred HHHHHHHhc-CCcEEEeCCCCCHHHHH---HHHHcCCceeehhhHHhccCCHHHH
Confidence 356667665 34444556778888875 56899999999976 476543
No 244
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=37.64 E-value=1.8e+02 Score=26.22 Aligned_cols=102 Identities=10% Similarity=0.068 Sum_probs=58.1
Q ss_pred hhHHHHHHHhC-CcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC
Q 024251 60 KQVMTAAVERG-WNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (270)
Q Consensus 60 Ke~vT~ALEsG-~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~ 132 (270)
-+.+..||++| ++.|.....+ .++++++..+.. ..| +.+-|.+.-++-. . -.
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~-------------~~g----v~liINd~~dlA~---~-~~ 87 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQ-------------EAG----AAALIAGDSRIAG---R-VK 87 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHH-------------HhC----CEEEEeCHHHHHH---H-hC
Confidence 46899999999 7999987543 223333333311 111 2334555433221 1 12
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHHhcccCeEEEec
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
++-|=+...| .|++.+-..+. ...++.. .++.++|+. +.+.|+|=|.|.|
T Consensus 88 adGVHLg~~d---~~~~~~r~~~~--~~~iiG~s~~~s~~~a~~---A~~~gaDYv~~Gp 139 (221)
T PRK06512 88 ADGLHIEGNL---AALAEAIEKHA--PKMIVGFGNLRDRHGAME---IGELRPDYLFFGK 139 (221)
T ss_pred CCEEEECccc---cCHHHHHHhcC--CCCEEEecCCCCHHHHHH---hhhcCCCEEEECC
Confidence 3445453223 46776666553 3457765 567887755 5679999999954
No 245
>PRK06801 hypothetical protein; Provisional
Probab=37.42 E-value=1.5e+02 Score=28.19 Aligned_cols=144 Identities=12% Similarity=0.111 Sum_probs=73.2
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccCCCC----eEEEEEEecChhhhhh
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDR----RVGSIIEVSTPQELQQ 125 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~--~l~~~~g~~~~~~gk----~v~~~v~V~~~ed~e~ 125 (270)
.+.+.+..||+.|++.|+++.-+ .++.+++..++.-. .+-.+=|.+-..++. ..+ ...-++|++..+
T Consensus 85 ~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~-~~~~T~pe~a~~ 163 (286)
T PRK06801 85 LHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEAD-SAKFTDPQLARD 163 (286)
T ss_pred CCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcc-cccCCCHHHHHH
Confidence 47899999999999999997422 23333332222110 011111111000000 001 011367788777
Q ss_pred hccccCCCceEEE-------eCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC-HHHHH
Q 024251 126 LQPADGQAENIVI-------DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED-VKAVL 197 (270)
Q Consensus 126 ~~~~~~~~~~vvv-------~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d-~~~v~ 197 (270)
+... ...|++-+ .+..-..+.+|.|-.--...+.-++..=.|----..+..+.+.|+++|=+.++= ..-..
T Consensus 164 f~~~-tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~a~~~ 242 (286)
T PRK06801 164 FVDR-TGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAALA 242 (286)
T ss_pred HHHH-HCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHHHHHH
Confidence 7654 35677777 222212355665433322223345544442111233577789999999999883 33345
Q ss_pred HHHHhh
Q 024251 198 ALKEYF 203 (270)
Q Consensus 198 ~l~~~~ 203 (270)
.+++++
T Consensus 243 ~~~~~~ 248 (286)
T PRK06801 243 AVEQRM 248 (286)
T ss_pred HHHHHH
Confidence 555555
No 246
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.38 E-value=3.3e+02 Score=25.02 Aligned_cols=104 Identities=14% Similarity=0.032 Sum_probs=61.4
Q ss_pred eeeeeecCCcccc-CCCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCCe--eec-----hhhhhhcccCCCceEEE
Q 024251 93 LDPLFIKEGEVYD-SGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ--VIP-----AENIVASFQGSGKTVFA 164 (270)
Q Consensus 93 i~~l~~~~g~~~~-~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWt--iIP-----lENlIA~~q~~~~~i~a 164 (270)
|..|.+.||+... -+|++--......+|.++-+.-.. ..++.+.|-..|-. --| ++.|.... ....+=.
T Consensus 4 IPaIDl~~Gk~Vrl~~G~~~~~~~~~~dP~~~A~~~~~-~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~--~~v~vGG 80 (241)
T PRK14114 4 VPAIDLFRGKVARMVKGKKENTIFYEKDPAELVEKLIE-EGFTLIHVVDLSKAIENSVENLPVLEKLSEFA--EHIQIGG 80 (241)
T ss_pred EEEEEEECCEEEEeeccccCcceEECCCHHHHHHHHHH-CCCCEEEEEECCCcccCCcchHHHHHHHHhhc--CcEEEec
Confidence 4446667775542 123332233445677775554444 33555544333321 111 23444432 2456777
Q ss_pred EcCCHHHHHHHHHHHhcccCeEEEec---CCHHHHHHHHHh
Q 024251 165 ISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEY 202 (270)
Q Consensus 165 ~v~~~~eA~~~l~~LE~G~DGVvl~~---~d~~~v~~l~~~ 202 (270)
.+++.++++.++. .|+|=|++.+ +||+-++++.++
T Consensus 81 GIrs~e~~~~~l~---~Ga~rvvigT~a~~~p~~l~~~~~~ 118 (241)
T PRK14114 81 GIRSLDYAEKLRK---LGYRRQIVSSKVLEDPSFLKFLKEI 118 (241)
T ss_pred CCCCHHHHHHHHH---CCCCEEEECchhhCCHHHHHHHHHh
Confidence 8999999998775 7999999999 688888887553
No 247
>PRK04046 translation initiation factor IF-6; Provisional
Probab=37.18 E-value=51 Score=30.15 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=75.9
Q ss_pred cChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhc----cc----------
Q 024251 118 STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ----GL---------- 183 (270)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~----G~---------- 183 (270)
.+.++++.+...+ ..+...+ .. +.-=+=|+++. +.++-|+..--+.+|.+..-++|.. |.
T Consensus 74 ~~~~e~~~l~e~L-~v~V~~~--~~-~~~~vGn~i~~--N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti~~~~~VGs~ 147 (222)
T PRK04046 74 VLDEELELLKEAL-DLNVEVL--PS-KLTALGNLILA--NDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSA 147 (222)
T ss_pred CCHHHHHHHHHhc-CceEEEE--ec-cccceEeEEEE--cCcEEEECCCCCHHHHHHHHHhhCceEEEEecCCccceeeE
Confidence 3455556665544 3333333 22 33344466665 6677777777777888877665532 22
Q ss_pred -----CeEEEecC-CHHHHHHHHHhhccccccccceeeeEEEE-EEEEeccccceeEEeccceeEEeecccc
Q 024251 184 -----GGIVLKVE-DVKAVLALKEYFDGRNEVSNLLSLMKATV-TRVDVAGMGDRVCVDLCRLFLVHSECLE 248 (270)
Q Consensus 184 -----DGVvl~~~-d~~~v~~l~~~~~~~~~~~~~l~L~~a~V-t~V~~vGmGdRVCVDtcSmFLVhsEt~e 248 (270)
-|.++.|+ +..+++.+.+++ +++....|| -.+.-||+|--+. -.-.|||++|.+
T Consensus 148 ivaNd~G~lv~p~~t~~ei~~i~~~l--------~v~~~~gTvn~G~~~VGs~~van---~~G~lvg~~tt~ 208 (222)
T PRK04046 148 GVVTNKGGLVHPDATDEELKFLEDLF--------KVEVDIGTVNFGSPLVGSGLVAN---SKGAVVGSDTTG 208 (222)
T ss_pred EEEeCCEEEECCCCCHHHHHHHHHHh--------CCceEEeEEcCCCCceeEEEEEe---CCEEEECCCCCH
Confidence 36788887 567898888888 588999999 8999999985442 227899999864
No 248
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=36.81 E-value=1.3e+02 Score=24.26 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=39.4
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-... .--.++..++. ....++..... .+.......++.|++|.+.+|.+..++.+.
T Consensus 49 ~~dlvild~~l~~~-~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 116 (210)
T PRK09935 49 PVDLIIMDIDLPGT-DGFTFLKRIKQIQSTVKVLFLSSK-SECFYAGRAIQAGANGFVSKCNDQNDIFHA 116 (210)
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 45677775432221 11233344332 23445544443 555666789999999999999998876654
No 249
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=36.75 E-value=98 Score=28.67 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+..|+| ..|+ ++-.++..--.+..++....+..+......+|..|+.+++..|.+..++.++
T Consensus 18 ~~~~~v~~-~~~~----~~~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~ 81 (322)
T TIGR03815 18 ARAPLVLV-DADM----AEACAAAGLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVEL 81 (322)
T ss_pred ccCCeEEE-Cchh----hhHHHhccCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHH
Confidence 34566777 4554 4454544333344577777777788899999999999999999998875443
No 250
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=36.75 E-value=46 Score=28.26 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=23.8
Q ss_pred CCcEEEEEe-Cc-hhHHHHHHHhCCcEEEE
Q 024251 49 KPKRVWIWT-ES-KQVMTAAVERGWNTFVF 76 (270)
Q Consensus 49 ~~K~vWiw~-~~-Ke~vT~ALEsG~d~~vv 76 (270)
....+++|+ .+ .+.+...++.|+|+++.
T Consensus 148 ~g~~v~~wtvn~~~~~~~~l~~~Gvd~i~T 177 (179)
T cd08555 148 LGLLSRIWTVNDNNEIINKFLNLGVDGLIT 177 (179)
T ss_pred CCCEEEEEeeCChHHHHHHHHHcCCCEEeC
Confidence 456799999 45 89999999999999884
No 251
>PRK10403 transcriptional regulator NarP; Provisional
Probab=36.40 E-value=1.5e+02 Score=23.74 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=36.6
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-...--++ ++..++. ....++..... .+.......++.|++|++..|-+..++.+.
T Consensus 52 ~~dlvi~d~~~~~~~~~~-~~~~l~~~~~~~~ii~l~~~-~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~ 119 (215)
T PRK10403 52 DPDVILLDLNMKGMSGLD-TLNALRRDGVTAQIIILTVS-DASSDVFALIDAGADGYLLKDSDPEVLLEA 119 (215)
T ss_pred CCCEEEEecCCCCCcHHH-HHHHHHHhCCCCeEEEEeCC-CChHHHHHHHHcCCCeEEecCCCHHHHHHH
Confidence 467777754322211122 2222221 12344444332 344456677899999999999988766543
No 252
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=35.95 E-value=2.9e+02 Score=28.72 Aligned_cols=109 Identities=9% Similarity=-0.024 Sum_probs=62.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
+.+...-.+.|.+.++++.+ .+.++++.+- |.+ .++...++++-++++- ..+++.+|+.
T Consensus 413 ~~va~~L~~~g~~vvvID~d-~~~v~~~~~~-----------------g~~-v~~GDat~~~~L~~ag--i~~A~~vvv~ 471 (621)
T PRK03562 413 QIVGRLLLSSGVKMTVLDHD-PDHIETLRKF-----------------GMK-VFYGDATRMDLLESAG--AAKAEVLINA 471 (621)
T ss_pred HHHHHHHHhCCCCEEEEECC-HHHHHHHHhc-----------------CCe-EEEEeCCCHHHHHhcC--CCcCCEEEEE
Confidence 34444445568888887664 5566555432 222 3555566666555433 2457778876
Q ss_pred CCCCe-eechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 140 LPDWQ-VIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 140 ~~DWt-iIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
..|.+ .+=+= ..|+-...+.+|++.++|.+++..+ .+.|+|-|+..+-+.
T Consensus 472 ~~d~~~n~~i~-~~ar~~~p~~~iiaRa~d~~~~~~L---~~~Gad~v~~e~~e~ 522 (621)
T PRK03562 472 IDDPQTSLQLV-ELVKEHFPHLQIIARARDVDHYIRL---RQAGVEKPERETFEG 522 (621)
T ss_pred eCCHHHHHHHH-HHHHHhCCCCeEEEEECCHHHHHHH---HHCCCCEEehhhHhH
Confidence 66643 22111 1222223456899999999887654 457999886554433
No 253
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=35.94 E-value=54 Score=30.40 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=27.3
Q ss_pred CC-CcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 48 SK-PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 48 ~~-~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+ ..+|++|| .+++.|..-++-|+|+||.+..
T Consensus 227 ~~~gl~V~~WTVN~~~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 227 RNSKVKIVLFGINTADDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred hcCCcEEEEEEeCCHHHHHHHHHcCCCEEEeCCc
Confidence 44 77899999 6889999999999999998654
No 254
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=35.79 E-value=75 Score=28.23 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=34.3
Q ss_pred CCeeechhhhhhcccCCCceEE-EEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHH
Q 024251 142 DWQVIPAENIVASFQGSGKTVF-AISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (270)
Q Consensus 142 DWtiIPlENlIA~~q~~~~~i~-a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~ 197 (270)
+|+.+. +.++..++..+-+++ -.+++.++++.+ ++.|+|||+ ++.|+.+.
T Consensus 196 ~~~~~~-~~~v~~~~~~G~~v~vWTVN~~~~~~~l---~~~gVdgIi--TD~p~~~~ 246 (249)
T cd08561 196 GVPLVT-PRFVRAAHAAGLEVHVWTVNDPAEMRRL---LDLGVDGII--TDRPDLLL 246 (249)
T ss_pred CeecCC-HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--cCCHHHHH
Confidence 344443 577777777776665 457888887765 477999976 67777443
No 255
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=35.76 E-value=1.3e+02 Score=23.69 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=37.7
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++......-.+ +++..+.. ....++... ...+.......++.|+++++..|.+..++.+.
T Consensus 49 ~~dlvl~d~~~~~~~~~-~~~~~l~~~~~~~~ii~ls-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 116 (211)
T PRK15369 49 EPDIVILDLGLPGMNGL-DVIPQLHQRWPAMNILVLT-ARQEEHMASRTLAAGALGYVLKKSPQQILLAA 116 (211)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHCCCCcEEEEe-CCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHH
Confidence 35677775432222112 23333322 233444443 34455566788999999999999988765543
No 256
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=35.68 E-value=3.7e+02 Score=25.08 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=68.7
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC--h----hhhhh
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST--P----QELQQ 125 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~--~----ed~e~ 125 (270)
.+.+.+..|..+|+|.++++-|| ++.+++. + +..+ .. ....|..+ ++.|.+ . +|+..
T Consensus 12 ~~~~~~~ka~~~gaD~vilDLEDav~~~~k~~AR~~--v--~~~l--~~---~~~~~~~~--~VRIn~~~~~~~~~di~~ 80 (288)
T TIGR01588 12 NNPAMISDAFIYGADSVMFDLEDAVSLAEKDSARLL--V--YEAL--QT---PDYGDTET--VVRINGLDTPFGLADIKA 80 (288)
T ss_pred CCHHHHHhhhhcCCCEEEEecccCCCcchHHHHHHH--H--HHHH--hc---cCCCCCEE--EEEECCCCChhHHHHHHH
Confidence 46788899999999999999776 2222211 1 0000 00 11224444 445553 2 44444
Q ss_pred hccccCCCceEEEeCC-CC-eeechhhhhhcc------cCCCceEEEEcCCHHHHHHHHHHHh--cccCeEEEecCCHH
Q 024251 126 LQPADGQAENIVIDLP-DW-QVIPAENIVASF------QGSGKTVFAISKTPSEAQIFLEALE--QGLGGIVLKVEDVK 194 (270)
Q Consensus 126 ~~~~~~~~~~vvv~~~-DW-tiIPlENlIA~~------q~~~~~i~a~v~~~~eA~~~l~~LE--~G~DGVvl~~~d~~ 194 (270)
+... ..+.+++--- .. ++-=+..++..+ ....+.|+..+.|++-..-+-+++. -|++|+.+-+.|..
T Consensus 81 ~l~~--g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~G~~Dls 157 (288)
T TIGR01588 81 VVKA--GVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIALGAEDYV 157 (288)
T ss_pred HHhc--CCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEeCHHHHH
Confidence 4332 3455555111 10 011111122211 1224679999999999888888883 48999999988654
No 257
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=35.50 E-value=2.6e+02 Score=23.20 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=40.5
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++......=.++ ++..++. ....++... +..+......+++.|++|.+.+|-+..++.+.
T Consensus 45 ~~~dlvild~~l~~~~g~~-~~~~l~~~~~~~~~pvi~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~ 115 (229)
T PRK10161 45 PWPDLILLDWMLPGGSGIQ-FIKHLKRESMTRDIPVVMLT-ARGEEEDRVRGLETGADDYITKPFSPKELVAR 115 (229)
T ss_pred cCCCEEEEeCCCCCCCHHH-HHHHHHhccccCCCCEEEEE-CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHH
Confidence 3467888865433322222 2222222 234455544 33455677889999999999999998876543
No 258
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=35.28 E-value=51 Score=29.10 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=25.0
Q ss_pred CCCcEEEEEeC-chhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWTE-SKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~~-~Ke~vT~ALEsG~d~~vv~~ 78 (270)
++.+.+++|+- +.+.+..+++.|+|+|+.+.
T Consensus 229 ~~G~~v~vwtvn~~~~~~~~~~~Gvdgi~TD~ 260 (263)
T cd08567 229 ALGLKVVPWTVNDPEDMARLIDLGVDGIITDY 260 (263)
T ss_pred HCCCEEEEecCCCHHHHHHHHHcCCCEEEcCC
Confidence 45677999994 57888899999999988764
No 259
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=35.22 E-value=60 Score=31.64 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=29.2
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCcchhhhhh
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAID 86 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~ 86 (270)
.....+++|| .+++.+...++.|+|+++.+.. ++..+
T Consensus 221 ~~Gl~V~vWTVN~~~~~~~l~~~GVdgIiTD~P--~~l~~ 258 (351)
T cd08608 221 ASNLSVNLYTVNEPWLYSLLWCSGVPSVTSDAS--HVLRK 258 (351)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEEECCH--HHHHH
Confidence 3567799999 5689999999999999998653 44443
No 260
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=35.04 E-value=1.7e+02 Score=27.85 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=56.1
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhcccc-CCCce
Q 024251 58 ESKQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD-GQAEN 135 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~~-e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~-~~~~~ 135 (270)
.+.+++.+.-+.|.=+++...... ++.+.+.++. + ...++..+.. ++++.+++.... ...+.
T Consensus 46 t~~~ma~ava~~GglGvi~~~~~~~~~~~~i~~vk---------~------~l~v~~~~~~-~~~~~~~~~~l~eagv~~ 109 (325)
T cd00381 46 TESEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVK---------G------RLLVGAAVGT-REDDKERAEALVEAGVDV 109 (325)
T ss_pred CcHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhc---------c------CceEEEecCC-ChhHHHHHHHHHhcCCCE
Confidence 446666666677776777654222 2233333321 0 0112222222 244444444333 35788
Q ss_pred EEEeCCC-CeeechhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHHhcccCeEEE
Q 024251 136 IVIDLPD-WQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 136 vvv~~~D-WtiIPlENlIA~~q~~~--~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
+++++.. .. -.+.++|..+.... ..|++ .+.++++|+.+ ++.|+|+|++
T Consensus 110 I~vd~~~G~~-~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l---~~aGaD~I~v 162 (325)
T cd00381 110 IVIDSAHGHS-VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDL---IDAGADGVKV 162 (325)
T ss_pred EEEECCCCCc-HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHH---HhcCCCEEEE
Confidence 8887642 22 22344555544332 45554 66677776555 5789999997
No 261
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=34.99 E-value=1.8e+02 Score=26.27 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=45.0
Q ss_pred EEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEE---cCCHHHHHHHH-HHHhcccCeEEEec
Q 024251 115 IEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAI---SKTPSEAQIFL-EALEQGLGGIVLKV 190 (270)
Q Consensus 115 v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~---v~~~~eA~~~l-~~LE~G~DGVvl~~ 190 (270)
+..-+++.++.+.... .+.-++...+..+..++|.+.......+..++.. +.|+.-.-..+ .+.--|++||++..
T Consensus 45 ~~~v~~~~l~~l~~~~-~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~afG~~~vil~~ 123 (237)
T TIGR00186 45 IQLVDRQKLDQLTKGG-NHQGIAAKVKPILYKDLNDLYKTAKSKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPK 123 (237)
T ss_pred EEEeCHHHHHHHhCCC-CCCeEEEEEecCCCCCHHHHHHhhhccCCCEEEEEcCCCCCccHHHHHHHHHHcCCCEEEECC
Confidence 3445788888877643 3445555565555557777775433333334444 44444443333 34457999999987
Q ss_pred CC
Q 024251 191 ED 192 (270)
Q Consensus 191 ~d 192 (270)
..
T Consensus 124 ~~ 125 (237)
T TIGR00186 124 RR 125 (237)
T ss_pred CC
Confidence 64
No 262
>PRK05967 cystathionine beta-lyase; Provisional
Probab=34.82 E-value=24 Score=34.61 Aligned_cols=115 Identities=11% Similarity=0.181 Sum_probs=64.0
Q ss_pred HHHHHHhCCcEEEEcCcchhhhhhccceeeeee---eee-cCC---------ccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 63 MTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFI-KEG---------EVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 63 vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~---l~~-~~g---------~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
.-++||.|.+++++.+.......-+..+ ++| +++ +.+ +.++.-|.++- ++...+.+.++++..
T Consensus 72 ~la~le~~~~~v~~sSG~aAi~~~l~al--l~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~-~vd~~~~e~l~~al~- 147 (395)
T PRK05967 72 AIDALEGSAGTILVPSGLAAVTVPFLGF--LSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVE-YYDPEIGAGIAKLMR- 147 (395)
T ss_pred HHHHHhCCCCEEEECcHHHHHHHHHHHh--cCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEE-EeCCCCHHHHHHhcC-
Confidence 3457898999999888533222222111 222 222 222 11233343321 222222233333322
Q ss_pred cCCCceEEEeCCC---CeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccC
Q 024251 130 DGQAENIVIDLPD---WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (270)
Q Consensus 130 ~~~~~~vvv~~~D---WtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~D 184 (270)
.+.+.|+++... .++.|++.|.+.+... .++..+.+.-..-+.+.-|+.|+|
T Consensus 148 -~~TklV~lesPsNP~l~v~dl~~I~~la~~~--g~~vvVD~t~a~p~~~~pl~~GaD 202 (395)
T PRK05967 148 -PNTKVVHTEAPGSNTFEMQDIPAIAEAAHRH--GAIVMMDNTWATPLYFRPLDFGVD 202 (395)
T ss_pred -cCceEEEEECCCCCCCcHHHHHHHHHHHHHh--CCEEEEECCccCceecChhHcCCC
Confidence 345678887653 5888999998876544 366666776666777899999997
No 263
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.67 E-value=3.5e+02 Score=24.49 Aligned_cols=135 Identities=11% Similarity=0.148 Sum_probs=70.3
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcc--hhhhhhccceee--------------eeeeee-cCC---------ccccC-CC
Q 024251 56 WTESKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIAL--------------LDPLFI-KEG---------EVYDS-GD 108 (270)
Q Consensus 56 w~~~Ke~vT~ALEsG~d~~vv~~~~--~e~a~~l~~i~~--------------i~~l~~-~~g---------~~~~~-~g 108 (270)
|+.+.+.+..+-+.|+.++++..=. ....+.-.++.. ++-..+ +.| ...+. .+
T Consensus 19 ~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~ 98 (289)
T cd02810 19 LLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPG 98 (289)
T ss_pred CCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHHHHHHhccCC
Confidence 3456788888889999988876421 111111122222 221111 111 11122 35
Q ss_pred CeEEEEEEecChhhhhhhccccCC--CceEEEeCCCCeee----------chhhhhhcccCC-CceEEEEcC---CHHHH
Q 024251 109 RRVGSIIEVSTPQELQQLQPADGQ--AENIVIDLPDWQVI----------PAENIVASFQGS-GKTVFAISK---TPSEA 172 (270)
Q Consensus 109 k~v~~~v~V~~~ed~e~~~~~~~~--~~~vvv~~~DWtiI----------PlENlIA~~q~~-~~~i~a~v~---~~~eA 172 (270)
+++.+-+.-.++++..+.+..... .+.+-|+..-+..- .+..++.++... +.-|+..+. +.+|.
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~ 178 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDI 178 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHH
Confidence 565555444567777666655433 67788876544322 234456655432 223444433 33455
Q ss_pred HHHHH-HHhcccCeEEEec
Q 024251 173 QIFLE-ALEQGLGGIVLKV 190 (270)
Q Consensus 173 ~~~l~-~LE~G~DGVvl~~ 190 (270)
...+. +.+.|+|+|.+..
T Consensus 179 ~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 179 VELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHcCCCEEEEEc
Confidence 44444 4567999999864
No 264
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=34.09 E-value=69 Score=29.33 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=42.1
Q ss_pred CeEEEecC-CHHHHHHHHHhhccccccccceeeeEEEE-EEEEeccccceeEEeccceeEEeecccc
Q 024251 184 GGIVLKVE-DVKAVLALKEYFDGRNEVSNLLSLMKATV-TRVDVAGMGDRVCVDLCRLFLVHSECLE 248 (270)
Q Consensus 184 DGVvl~~~-d~~~v~~l~~~~~~~~~~~~~l~L~~a~V-t~V~~vGmGdRVCVDtcSmFLVhsEt~e 248 (270)
.|.+++|+ +.++++.+.+++ +++....|| -.+.-||+|- |=+-.-.|||.+|.+
T Consensus 148 ~G~lvhP~~s~ee~~~i~d~L--------gV~v~~gTin~G~~~VGs~~---Vann~G~lv~~~tt~ 203 (215)
T TIGR00323 148 RGGLVHPQTSVQEQEELSSLL--------GVELVAGTVNRGTTVVGAGM---VANSKGAVVGLDTTG 203 (215)
T ss_pred cEEEECCCCCHHHHHHHHHHh--------CCcEEEEEecCCCCceeEEE---EEECCEEEECCCCCH
Confidence 36788888 667889999988 588899999 5999999973 334447789999864
No 265
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=34.06 E-value=97 Score=30.54 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=32.6
Q ss_pred CCCceEEEeCCCCe------eechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 131 GQAENIVIDLPDWQ------VIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 131 ~~~~~vvv~~~DWt------iIPlENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
...+.+++..+-.. --+.++|....+..+..|++ .+.+.++|+.++ +.|+|||+.-
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~---~aGaDgV~~G 216 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLM---RTGAAGVIVG 216 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHH---HcCCCEEEEC
Confidence 45788888632100 01223444434444567776 677777766555 5899999844
No 266
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=33.85 E-value=2.7e+02 Score=24.82 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=38.7
Q ss_pred CCceEEEeCCCCeeechhhhhhc--ccCCCceEEEEcCCHHHHHHHHHHHhc--ccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVAS--FQGSGKTVFAISKTPSEAQIFLEALEQ--GLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~--~q~~~~~i~a~v~~~~eA~~~l~~LE~--G~DGVvl~~~d~~~v~~l 199 (270)
..|.+++|..-...=.++-+... .+..+.+|+......+ .....++. |++|++.++.+++++.+.
T Consensus 52 ~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~~~~---~~~~~~~~~~Ga~G~l~K~~~~~~L~~a 120 (216)
T PRK10100 52 SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPED---YPYREIENWPHINGVFYAMEDQERVVNG 120 (216)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEEEEECCch---hHHHHHHHhcCCeEEEECCCCHHHHHHH
Confidence 36888987763221123322111 1233567776665544 33455554 999999999999887653
No 267
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.51 E-value=3.4e+02 Score=27.25 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=67.3
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEEcCcch---hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 53 VWIWTESKQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 53 vWiw~~~Ke~vT~ALEsG~d~~vv~~~~~---e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
+++-.+..+.+.+.+|.|+|-++++.-|- ...+-+..|..--| +.. .+...|.+.++...+...
T Consensus 148 vg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p------------~~~-vi~g~V~T~e~a~~l~~a 214 (404)
T PRK06843 148 VSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYP------------NLD-LIAGNIVTKEAALDLISV 214 (404)
T ss_pred EeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCC------------CCc-EEEEecCCHHHHHHHHHc
Confidence 34434567899999999999988765331 11122222211111 111 123367788876666553
Q ss_pred cCCCceEEEeC-----------CCCeeec-hh---hhhhcccCCCceEEEE--cCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 130 DGQAENIVIDL-----------PDWQVIP-AE---NIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 130 ~~~~~~vvv~~-----------~DWtiIP-lE---NlIA~~q~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.+|.|.+-. .+|- .| +. .+-..++..+..||+. +.++.|+. .+|..|+|+|++-.-
T Consensus 215 --GaD~I~vG~g~Gs~c~tr~~~g~g-~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~---KALalGA~aVmvGs~ 287 (404)
T PRK06843 215 --GADCLKVGIGPGSICTTRIVAGVG-VPQITAICDVYEVCKNTNICIIADGGIRFSGDVV---KAIAAGADSVMIGNL 287 (404)
T ss_pred --CCCEEEECCCCCcCCcceeecCCC-CChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH---HHHHcCCCEEEEcce
Confidence 467776632 1221 23 22 2222234445678875 67777765 456799999998654
No 268
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=33.41 E-value=1.8e+02 Score=26.98 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=49.8
Q ss_pred EEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHH-hcccCeEEE
Q 024251 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVL 188 (270)
Q Consensus 111 v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~L-E~G~DGVvl 188 (270)
+..+..+.+.++++.+... ..+.+=|-..|=+.+||=+-+|+. +...-|=+...+.+|.+.+++++ +.|...++|
T Consensus 70 i~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~n~~lL~~~A~t-gkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~l 145 (241)
T PF03102_consen 70 IDFFSTPFDEESVDFLEEL--GVPAYKIASGDLTNLPLLEYIAKT-GKPVILSTGMSTLEEIERAVEVLREAGNEDLVL 145 (241)
T ss_dssp -EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-HHHHHHHHTT--S-EEEE-TT--HHHHHHHHHHHHHHCT--EEE
T ss_pred CEEEECCCCHHHHHHHHHc--CCCEEEeccccccCHHHHHHHHHh-CCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 4467778888888887544 467788888899999999999973 33333445678899999999999 888888876
No 269
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=33.19 E-value=71 Score=29.30 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=58.9
Q ss_pred chhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhccc-------------------CeEEEecC-CHHHHHHHHHhhccc
Q 024251 147 PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGL-------------------GGIVLKVE-DVKAVLALKEYFDGR 206 (270)
Q Consensus 147 PlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~-------------------DGVvl~~~-d~~~v~~l~~~~~~~ 206 (270)
=+=|+++. +..+-|+..--+-+|.+..-..|..-+ .|.+++|+ +.++++.+++++
T Consensus 100 ~iGnli~~--Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L--- 174 (220)
T cd00527 100 ALGNVILC--NDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELF--- 174 (220)
T ss_pred eeeeEEEE--cCceEEeCCCCCHHHHHHHHHhcCCcEEEEEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHh---
Confidence 34555554 455555555555566665555542111 25677787 567788888888
Q ss_pred cccccceeeeEEEE-EEEEeccccceeEEeccceeEEeecccc
Q 024251 207 NEVSNLLSLMKATV-TRVDVAGMGDRVCVDLCRLFLVHSECLE 248 (270)
Q Consensus 207 ~~~~~~l~L~~a~V-t~V~~vGmGdRVCVDtcSmFLVhsEt~e 248 (270)
+++....|| -.+.-||+| ||=+-.-.|||.+|.+
T Consensus 175 -----~V~v~~gTvN~G~~~VGs~---~VannkG~lvg~~tt~ 209 (220)
T cd00527 175 -----KVPVVAGTVNFGSQYVGAG---LVANSKGAVVGSDTTG 209 (220)
T ss_pred -----CCcEEEEEEcCCCCceeEE---EEEECCEEEECCCCCH
Confidence 588899999 889999987 4444447799999854
No 270
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=33.17 E-value=3.4e+02 Score=23.86 Aligned_cols=134 Identities=15% Similarity=0.065 Sum_probs=63.4
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc---chhhhhhccce----eeeeeeeecCCccccCCCCeEEEEE--Ee--c
Q 024251 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSII--EV--S 118 (270)
Q Consensus 52 ~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~---~~e~a~~l~~i----~~i~~l~~~~g~~~~~~gk~v~~~v--~V--~ 118 (270)
.+|+-- ++.+-+..+++.|++.+++... +.++.+++.+. ..+-.+-+.++.+ .++ -++.... +. .
T Consensus 76 pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~-~~~-~~v~~~~~~~~~~~ 153 (232)
T TIGR03572 76 PLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELD-GSD-YKVYSDNGRRATGR 153 (232)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCC-CCc-EEEEECCCcccCCC
Confidence 466633 4677777789999999998863 34444544432 1121222232210 000 0111100 00 1
Q ss_pred ChhhhhhhccccCCCceEEEeCCCC----eeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHHhcccCeEEEec
Q 024251 119 TPQELQQLQPADGQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 119 ~~ed~e~~~~~~~~~~~vvv~~~DW----tiIPlENlIA~~q~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
++.++-..... ...+.+++...+- +-..+|.+-+-.+..+..|++. ++++++++.++ .+.|+|||++.+
T Consensus 154 ~~~~~~~~~~~-~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l--~~~gadgV~vg~ 228 (232)
T TIGR03572 154 DPVEWAREAEQ-LGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVA--LEAGASAVAAAS 228 (232)
T ss_pred CHHHHHHHHHH-cCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH--HHcCCCEEEEeh
Confidence 12221111111 2467777765211 1122333322222234455554 68888887644 345999999865
No 271
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.74 E-value=88 Score=27.93 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=31.4
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 149 ENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
..++..++..+-++++ .+++.++++.+ ++.|+|||+ ++.|+.+.+
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~~~~~~~l---~~~Gvd~Ii--TD~p~~~~~ 253 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNEKADMIRL---INWGVDGMF--TNYPDRLKE 253 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--eCCHHHHHH
Confidence 5778888877767655 56777777655 467999987 666765443
No 272
>PRK13435 response regulator; Provisional
Probab=32.06 E-value=2.4e+02 Score=21.86 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=37.4
Q ss_pred CCceEEEeCC---CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~---DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.+|++.. +..-+.+-..+.. .....++....+.+. ...++.|++|.+..|-+..++.+.
T Consensus 50 ~~dliivd~~~~~~~~~~~~~~~l~~--~~~~pii~ls~~~~~----~~~~~~ga~~~l~kp~~~~~l~~~ 114 (145)
T PRK13435 50 QPDVALVDVHLADGPTGVEVARRLSA--DGGVEVVFMTGNPER----VPHDFAGALGVIAKPYSPRGVARA 114 (145)
T ss_pred CCCEEEEeeecCCCCcHHHHHHHHHh--CCCCCEEEEeCCHHH----HHHHhcCcceeEeCCCCHHHHHHH
Confidence 4677777542 2333333333332 224556666555442 356778999999999998876554
No 273
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=32.00 E-value=2e+02 Score=24.60 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=55.5
Q ss_pred chhHHHHH-HHhCCcEEEEcCcchhhhhhccceeeeeeeeecCC------ccccCCCCeEEEEEEecChhhhhhhccccC
Q 024251 59 SKQVMTAA-VERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEG------EVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (270)
Q Consensus 59 ~Ke~vT~A-LEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g------~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~ 131 (270)
..+.+... .+.|+|-||-...++++.++.-++.++.. -+-+- ...+..++++|+...-.--.+++.+...+
T Consensus 22 ~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I-~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll- 99 (176)
T PF06506_consen 22 AVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEI-PISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL- 99 (176)
T ss_dssp HHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE----HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH-
T ss_pred HHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEE-CCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh-
Confidence 45566666 67899988877777777776666655542 00000 11234455555544433333333333333
Q ss_pred CCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..+.....+.++.= +|+.|-++...+..++..-... .--+-+.|..++++.+.
T Consensus 100 ~~~i~~~~~~~~~e--~~~~i~~~~~~G~~viVGg~~~-----~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 100 GVDIKIYPYDSEEE--IEAAIKQAKAEGVDVIVGGGVV-----CRLARKLGLPGVLIESG 152 (176)
T ss_dssp T-EEEEEEESSHHH--HHHHHHHHHHTT--EEEESHHH-----HHHHHHTTSEEEESS--
T ss_pred CCceEEEEECCHHH--HHHHHHHHHHcCCcEEECCHHH-----HHHHHHcCCcEEEEEec
Confidence 22333333444432 3444444444444444332221 11124566667776664
No 274
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.98 E-value=2e+02 Score=25.99 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=43.2
Q ss_pred cChhhhhhhccccCCCceEEEeCCCCe------eec-hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEE
Q 024251 118 STPQELQQLQPADGQAENIVIDLPDWQ------VIP-AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DWt------iIP-lENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
.+|.++-+.-... .+.+++-..|=+ ..+ ++.+... ....|.+ .+++.++++.++. .|+|+|++
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~---~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYE---IGVENVII 101 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHH---CCCCEEEE
Confidence 3666654433332 555555444422 122 2333332 2334444 6999999998865 59999999
Q ss_pred ecC--CHHHHHHHHH
Q 024251 189 KVE--DVKAVLALKE 201 (270)
Q Consensus 189 ~~~--d~~~v~~l~~ 201 (270)
-+. ||+-++++.+
T Consensus 102 Gtaa~~~~~l~~~~~ 116 (228)
T PRK04128 102 GTKAFDLEFLEKVTS 116 (228)
T ss_pred CchhcCHHHHHHHHH
Confidence 766 5555555543
No 275
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=31.59 E-value=2.3e+02 Score=23.19 Aligned_cols=58 Identities=26% Similarity=0.262 Sum_probs=46.6
Q ss_pred eechhhhhhcccCCCceEEEEcCCH----HHHHHHHHHHhc-c-cCeEEEecCCHHHHHHHHHhh
Q 024251 145 VIPAENIVASFQGSGKTVFAISKTP----SEAQIFLEALEQ-G-LGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 145 iIPlENlIA~~q~~~~~i~a~v~~~----~eA~~~l~~LE~-G-~DGVvl~~~d~~~v~~l~~~~ 203 (270)
+..|+.++..+.+ +..+.-.+++. +-++.++..+++ | .+-|++..-++..++.+++..
T Consensus 48 i~tL~e~l~~~~~-~~~i~leiK~~~~~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~ 111 (189)
T cd08556 48 IPTLEEVLELVKG-GVGLNIELKEPTRYPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELD 111 (189)
T ss_pred CCCHHHHHHhccc-CcEEEEEECCCCCchhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhC
Confidence 8889999999887 67899999997 345556666655 3 799999999999888887754
No 276
>PRK09206 pyruvate kinase; Provisional
Probab=31.52 E-value=69 Score=32.65 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=65.3
Q ss_pred eecCCccccCCCCeE-EEE--EEecChhhhhhhccc-cCCCceEEEeCC-C-CeeechhhhhhcccCCCceEEEEcCCHH
Q 024251 97 FIKEGEVYDSGDRRV-GSI--IEVSTPQELQQLQPA-DGQAENIVIDLP-D-WQVIPAENIVASFQGSGKTVFAISKTPS 170 (270)
Q Consensus 97 ~~~~g~~~~~~gk~v-~~~--v~V~~~ed~e~~~~~-~~~~~~vvv~~~-D-WtiIPlENlIA~~q~~~~~i~a~v~~~~ 170 (270)
...+|.+...+|..+ +.. ..--+.+|.+.+.-. ....|++-+.|- . =.++.+-+++++..+.+..|++...+.+
T Consensus 146 v~~~G~l~s~Kgvn~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~e 225 (470)
T PRK09206 146 VLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQE 225 (470)
T ss_pred EEECCEecCCCceeccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHH
Confidence 345665555444221 111 122244444443222 235899998774 2 2377888899875545789999999999
Q ss_pred HHHHHHHHHhcccCeEEEecCCHH
Q 024251 171 EAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 171 eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
..+-+=++++. +|||++.+.|.+
T Consensus 226 av~nldeIl~~-~DgImVaRGDLg 248 (470)
T PRK09206 226 GLNNFDEILEA-SDGIMVARGDLG 248 (470)
T ss_pred HHHhHHHHHHh-CCEEEECcchhh
Confidence 99999999999 999999999864
No 277
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=31.45 E-value=85 Score=24.39 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=30.0
Q ss_pred CCcEEEEE-eCchhHHHHHHHhCCcEEEEcCcc------hhhhhhcc
Q 024251 49 KPKRVWIW-TESKQVMTAAVERGWNTFVFLSEN------QQLAIDWS 88 (270)
Q Consensus 49 ~~K~vWiw-~~~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~ 88 (270)
++..+||= -++.+++..|+++|+.++|+..+. .+++++.+
T Consensus 39 ~~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~ 85 (105)
T PF07085_consen 39 KPGDLVITPGDREDIQLAAIEAGIACIILTGGLEPSEEVLELAKELG 85 (105)
T ss_dssp HTTEEEEEETT-HHHHHHHCCTTECEEEEETT----HHHHHHHHHHT
T ss_pred CCCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCC
Confidence 34789998 578999999999999999988542 35555555
No 278
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=31.40 E-value=2.8e+02 Score=27.51 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=30.9
Q ss_pred Ceeechhhhhhccc----CC-CceEEEEc---CCHHHHHHHHHHHh-cccCeEEEec
Q 024251 143 WQVIPAENIVASFQ----GS-GKTVFAIS---KTPSEAQIFLEALE-QGLGGIVLKV 190 (270)
Q Consensus 143 WtiIPlENlIA~~q----~~-~~~i~a~v---~~~~eA~~~l~~LE-~G~DGVvl~~ 190 (270)
|+--|+|..++.+. .. ..-||+.+ .+.+|=..++..+| .|+|++-|.-
T Consensus 92 ~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNi 148 (385)
T PLN02495 92 ISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINF 148 (385)
T ss_pred ccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEEC
Confidence 34447777665442 11 23678877 47788776766664 5899999854
No 279
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=31.14 E-value=1.2e+02 Score=30.71 Aligned_cols=73 Identities=15% Similarity=0.351 Sum_probs=41.3
Q ss_pred EEEEEEecChhhhhhhcccc-CCCceEEEeCC-CCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHHhcccCe
Q 024251 111 VGSIIEVSTPQELQQLQPAD-GQAENIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGG 185 (270)
Q Consensus 111 v~~~v~V~~~ed~e~~~~~~-~~~~~vvv~~~-DWtiIPlENlIA~~q~~--~~~i~a-~v~~~~eA~~~l~~LE~G~DG 185 (270)
||+.+-+ ++++++++.... +..+.+.|+.. +-+.-.+| .|..+... +..|++ .+.++++|+.+ .+.|+|+
T Consensus 232 Vgaavg~-~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~-~i~~ik~~~~~~~v~aG~V~t~~~a~~~---~~aGad~ 306 (495)
T PTZ00314 232 VGAAIST-RPEDIERAAALIEAGVDVLVVDSSQGNSIYQID-MIKKLKSNYPHVDIIAGNVVTADQAKNL---IDAGADG 306 (495)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHH-HHHHHHhhCCCceEEECCcCCHHHHHHH---HHcCCCE
Confidence 3444333 455666655544 45888888763 22222222 34443332 345655 57777777755 4789999
Q ss_pred EEE
Q 024251 186 IVL 188 (270)
Q Consensus 186 Vvl 188 (270)
|.+
T Consensus 307 I~v 309 (495)
T PTZ00314 307 LRI 309 (495)
T ss_pred EEE
Confidence 975
No 280
>PRK11173 two-component response regulator; Provisional
Probab=30.98 E-value=2.4e+02 Score=23.76 Aligned_cols=70 Identities=7% Similarity=0.066 Sum_probs=39.8
Q ss_pred CCceEEEeCCCCee--echhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHH-HHHHhhc
Q 024251 132 QAENIVIDLPDWQV--IPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL-ALKEYFD 204 (270)
Q Consensus 132 ~~~~vvv~~~DWti--IPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~-~l~~~~~ 204 (270)
..+.++++..-... +.+-..+.. .....++......+ .......++.|+|+.+.+|-++.++. .++.++.
T Consensus 47 ~~dlvild~~l~~~~g~~~~~~lr~--~~~~pii~lt~~~~-~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 47 DINLVIMDINLPGKNGLLLARELRE--QANVALMFLTGRDN-EVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHhc--CCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 46778875432221 222222222 12334555544433 34456789999999999999998774 3344443
No 281
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=30.84 E-value=4.2e+02 Score=24.20 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCeEEEEEEecChhhhhhhccccCCCceEEEeC-------CCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHh
Q 024251 108 DRRVGSIIEVSTPQELQQLQPADGQAENIVIDL-------PDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE 180 (270)
Q Consensus 108 gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~-------~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE 180 (270)
++.+|..+. +.|+.+++... ..||+.+-. .|-..+=+|-+-...+...--+|+.-.- ..+-+-++++
T Consensus 104 ~~iIG~S~h--~~eea~~A~~~--g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi--~~~nv~~v~~ 177 (211)
T COG0352 104 GLIIGLSTH--DLEEALEAEEL--GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI--NLENVPEVLE 177 (211)
T ss_pred CCEEEeecC--CHHHHHHHHhc--CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC--CHHHHHHHHH
Confidence 445665533 66655555443 388998832 1333333333322212222235554332 2344567889
Q ss_pred cccCeEEEe-----cCCH-HHHHHHHHhh
Q 024251 181 QGLGGIVLK-----VEDV-KAVLALKEYF 203 (270)
Q Consensus 181 ~G~DGVvl~-----~~d~-~~v~~l~~~~ 203 (270)
.|+|||.+- ..|+ ..++++++.+
T Consensus 178 ~Ga~gVAvvsai~~a~d~~~a~~~~~~~~ 206 (211)
T COG0352 178 AGADGVAVVSAITSAADPAAAAKALRNAL 206 (211)
T ss_pred hCCCeEEehhHhhcCCCHHHHHHHHHHHH
Confidence 999999763 3343 5566666655
No 282
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=30.46 E-value=80 Score=32.19 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=51.5
Q ss_pred CCceEEEeCC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 132 QAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 132 ~~~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
..|++-+.|- -=.|+-+-++++.. +....|++...+.+--+-+=++++. +|||++.+.|.+
T Consensus 187 ~vD~ia~SFV~~~~di~~~r~~l~~~-~~~~~iiakIEt~~av~nldeI~~~-~DgImIargDLg 249 (480)
T cd00288 187 GVDMIFASFVRKASDVLEIREVLGEK-GKDIKIIAKIENQEGVNNFDEILEA-SDGIMVARGDLG 249 (480)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhc-CCCceEEEEECCHHHHHhHHHHHHh-cCEEEECcchhh
Confidence 5899999874 34477888888874 5678899999999999999999999 999999999864
No 283
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.75 E-value=1.2e+02 Score=26.07 Aligned_cols=29 Identities=3% Similarity=0.130 Sum_probs=20.0
Q ss_pred CHHHHHHHHH-HHhcccCeEEEecCCHHHH
Q 024251 168 TPSEAQIFLE-ALEQGLGGIVLKVEDVKAV 196 (270)
Q Consensus 168 ~~~eA~~~l~-~LE~G~DGVvl~~~d~~~v 196 (270)
+.++....++ ...+|+|||++.|.|+..+
T Consensus 45 ~~~~~~~~~~~l~~~~vDgiii~~~~~~~~ 74 (274)
T cd06311 45 DTEQQNAQQDLLINRKIDALVILPFESAPL 74 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCchhh
Confidence 4454555565 5668999999998776543
No 284
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=29.50 E-value=3.2e+02 Score=22.46 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=37.7
Q ss_pred CCceEEEeCCCCeeechhhhhhcccCC-CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~~-~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-...=.+ .++..++.. ...++..... .+-.....+++.|++|.+.+|-+..++.+.
T Consensus 44 ~~d~vl~d~~~~~~~g~-~~~~~l~~~~~~~ii~lt~~-~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~ 110 (232)
T PRK10955 44 SIDLLLLDVMMPKKNGI-DTLKELRQTHQTPVIMLTAR-GSELDRVLGLELGADDYLPKPFNDRELVAR 110 (232)
T ss_pred CCCEEEEeCCCCCCcHH-HHHHHHHhcCCCcEEEEECC-CCHHHHHHHHHcCCCEEEcCCCCHHHHHHH
Confidence 46788885443222111 122222221 2455554433 344556678899999999999998776443
No 285
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=29.24 E-value=93 Score=30.35 Aligned_cols=54 Identities=7% Similarity=0.111 Sum_probs=37.0
Q ss_pred CCeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 142 DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 142 DWtiIPlENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
+++.+. +.++.+++..+-+|.+ .|+++++++.++ +.|+|||+ ||.|+.+.++..
T Consensus 207 ~~~~lt-~~~v~~~~~~Gl~V~vWTVN~~~~~~~l~---~~GVdgIi--TD~P~~l~~l~~ 261 (351)
T cd08608 207 RYTQAS-AQEIRDYSASNLSVNLYTVNEPWLYSLLW---CSGVPSVT--SDASHVLRKVPF 261 (351)
T ss_pred chhhcC-HHHHHHHHHCCCEEEEEecCCHHHHHHHH---HCCCCEEE--ECCHHHHHHhhh
Confidence 334443 4677777766666544 677788777655 67999987 888987766544
No 286
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=29.11 E-value=1.9e+02 Score=26.40 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=30.0
Q ss_pred CceEEEE-----c--CCHHHH-HHHHHHHhcccCeEEEecC-CHHHHHHHHHh
Q 024251 159 GKTVFAI-----S--KTPSEA-QIFLEALEQGLGGIVLKVE-DVKAVLALKEY 202 (270)
Q Consensus 159 ~~~i~a~-----v--~~~~eA-~~~l~~LE~G~DGVvl~~~-d~~~v~~l~~~ 202 (270)
+.-|+|. + ...+|| +.+-...|.|+|+|.+.+- |+++++++.+.
T Consensus 142 ~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~ 194 (243)
T cd00377 142 DFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEA 194 (243)
T ss_pred CeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhc
Confidence 3455555 4 356665 4556678999999999765 77777766553
No 287
>PRK09581 pleD response regulator PleD; Reviewed
Probab=28.83 E-value=4.5e+02 Score=24.16 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=43.2
Q ss_pred CCceEEEeCCCCeeechhhhhhcccCC----CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQGS----GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~~----~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++...+. .....++..++.. ...++...... +......+++.|+++.+.+|-+++++.+.
T Consensus 46 ~~dlvi~d~~~~~-~~g~~l~~~i~~~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~kp~~~~~l~~~ 115 (457)
T PRK09581 46 QPDIILLDVMMPG-MDGFEVCRRLKSDPATTHIPVVMVTALD-DPEDRVRGLEAGADDFLTKPINDVALFAR 115 (457)
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHcCcccCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECCCCHHHHHHH
Confidence 4677888765332 3444555555432 34566555443 45557899999999999999998876543
No 288
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=28.80 E-value=2.9e+02 Score=25.01 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=56.0
Q ss_pred eeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCCe---eechhhhhhcc-cCCCceEE--EEc
Q 024251 93 LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ---VIPAENIVASF-QGSGKTVF--AIS 166 (270)
Q Consensus 93 i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWt---iIPlENlIA~~-q~~~~~i~--a~v 166 (270)
|-.|.+.||..+....... .....+|.++-+.... ..++.+.+...+-. -=+--.++.++ +.....|. ..+
T Consensus 7 ip~iD~~~G~~V~~~~~~~--~~~~~dp~~~a~~~~~-~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi 83 (254)
T TIGR00735 7 IPCLDVRDGRVVKGVQFLN--LRDAGDPVELAQRYDE-EGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGI 83 (254)
T ss_pred EEEEEeECCEEEEeEeecC--ceECCCHHHHHHHHHH-cCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCC
Confidence 3346667776655322110 2223467665554444 33555555443321 00111122222 11223344 489
Q ss_pred CCHHHHHHHHHHHhcccCeEEEecC---CHHHHHHHHHhh
Q 024251 167 KTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (270)
Q Consensus 167 ~~~~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~~~~ 203 (270)
++.++++.++. .|+++|++.+. ||+.++++.+.+
T Consensus 84 ~s~~d~~~~~~---~Ga~~vivgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 84 KSIEDVDKLLR---AGADKVSINTAAVKNPELIYELADRF 120 (254)
T ss_pred CCHHHHHHHHH---cCCCEEEEChhHhhChHHHHHHHHHc
Confidence 99999998876 49999999885 666666655544
No 289
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=28.49 E-value=73 Score=30.54 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=29.7
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec-----CCHHHHH
Q 024251 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVL 197 (270)
Q Consensus 148 lENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~~~v~ 197 (270)
|+.|+... +-..-+-|.+.+++||.. ++|.|+|||++.+ +||.+..
T Consensus 181 l~~i~e~~-~vpVivdAGIgt~sDa~~---AmElGaDgVL~nSaIakA~dP~~mA 231 (267)
T CHL00162 181 LQIIIENA-KIPVIIDAGIGTPSEASQ---AMELGASGVLLNTAVAQAKNPEQMA 231 (267)
T ss_pred HHHHHHcC-CCcEEEeCCcCCHHHHHH---HHHcCCCEEeecceeecCCCHHHHH
Confidence 44555532 122234466788888765 6789999999866 6886543
No 290
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.40 E-value=4.3e+02 Score=23.52 Aligned_cols=130 Identities=16% Similarity=0.084 Sum_probs=68.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
-.-+..|++.|+|+|=++=. ..+-|.+ ++.-|..+-.-.|.. + .+.=.+-+++..+....+ .+.--.
T Consensus 16 l~Af~~A~~~gad~iE~DV~----lTkDg~~-----Vv~HD~~l~r~t~~~-~-~v~~~t~~el~~l~~~~~--~~~~~~ 82 (229)
T cd08581 16 LVGFRAAVDAGARFVEFDVQ----LSADGVP-----VVFHDDTLLRLTGVE-G-LLHELEDAELDSLRVAEP--ARFGSR 82 (229)
T ss_pred HHHHHHHHHcCCCEEEEeee----ECCCCcE-----EEECCCccccccCCC-c-eeccCCHHHHhhcccccC--cccccc
Confidence 56788999999998765420 1111222 222233222111111 1 111223444444321111 111011
Q ss_pred CCCCeeechhhhhhcccC-CCceEEEEcCCHHH-----HHHHHHHHh---cccCeEEEecCCHHHHHHHHHh
Q 024251 140 LPDWQVIPAENIVASFQG-SGKTVFAISKTPSE-----AQIFLEALE---QGLGGIVLKVEDVKAVLALKEY 202 (270)
Q Consensus 140 ~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~e-----A~~~l~~LE---~G~DGVvl~~~d~~~v~~l~~~ 202 (270)
+.+=+|--||.+++.+.+ .+..+.-+.++... .+.+..+++ .-.+.+++..=|+..++++++.
T Consensus 83 ~~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~SF~~~~l~~~r~~ 154 (229)
T cd08581 83 FAGEPLPSLAAVVQWLAQHPQVTLFVEIKTESLDRFGLERVVDKVLRALPAVAAQRVLISFDYDLLALAKQQ 154 (229)
T ss_pred cCCccCCCHHHHHHHHhhCCCceEEEEecCCcccccchhHHHHHHHHHHHhccCCeEEEeCCHHHHHHHHhc
Confidence 233345559999998876 46789999986531 223333333 2447899999999988888775
No 291
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=28.27 E-value=1.7e+02 Score=25.08 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=13.8
Q ss_pred HHHHHHHHHh-cccCeEEEecCC
Q 024251 171 EAQIFLEALE-QGLGGIVLKVED 192 (270)
Q Consensus 171 eA~~~l~~LE-~G~DGVvl~~~d 192 (270)
+.+.+.+.|. .++|||++.+.+
T Consensus 52 ~~~~~~~~l~~~~~dgiii~~~~ 74 (275)
T cd06295 52 DRDWLARYLASGRADGVILIGQH 74 (275)
T ss_pred hHHHHHHHHHhCCCCEEEEeCCC
Confidence 3345555554 688988886643
No 292
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.19 E-value=79 Score=32.08 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=40.4
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHHhcccCeEE
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIV 187 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a-~v~~~~eA~~~l~~LE~G~DGVv 187 (270)
...+.++++...=.-.-+.++|..+... +..|++ -+.+.++|+-+.+ .|+|+|-
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~---aGad~v~ 294 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE---AGADIVK 294 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH---cCCCEEE
Confidence 3488899988765566677777766554 356777 8888888887765 7999986
No 293
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=28.10 E-value=75 Score=29.49 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=27.8
Q ss_pred hhhhhcccCC-CceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 149 ENIVASFQGS-GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 149 ENlIA~~q~~-~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
+.+|++++.. +-+|.+ .|+++++++ ..++.|||||+ ||.|+
T Consensus 219 ~~~V~~~h~~~gl~V~~WTVN~~~~~~---~l~~~GVDgIi--TD~P~ 261 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGINTADDYR---LAKCLGADAVM--VDSPA 261 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEeCCHHHHH---HHHHcCCCEEE--eCCcc
Confidence 4567777766 655544 567777766 56778999998 45443
No 294
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=28.09 E-value=96 Score=29.29 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=42.8
Q ss_pred CeEEEecC-CHHHHHHHHHhhccccccccceeeeEEEE-EEEEeccccceeEEeccceeEEeecccc
Q 024251 184 GGIVLKVE-DVKAVLALKEYFDGRNEVSNLLSLMKATV-TRVDVAGMGDRVCVDLCRLFLVHSECLE 248 (270)
Q Consensus 184 DGVvl~~~-d~~~v~~l~~~~~~~~~~~~~l~L~~a~V-t~V~~vGmGdRVCVDtcSmFLVhsEt~e 248 (270)
.|.+++|+ +.+++++|.+++ ++++...|| -...-||+|-- =+-.-.|||.+|.+
T Consensus 157 ~G~LVhP~~s~ee~~~i~d~L--------~V~v~~gTVn~G~~~VGsg~V---aNn~G~lvg~~TT~ 212 (247)
T PTZ00136 157 QGGLVHPKTSVQEMDELSSLL--------QVPLVAGTVNRGSDVIGAGLV---VNDWAAFCGMDTTA 212 (247)
T ss_pred cEEEECCCCCHHHHHHHHHHh--------CCcEEEeeecCCCCceeEEEE---EECCEEEECCCCCH
Confidence 48899998 677899999988 588999999 49999999843 33347788998754
No 295
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.97 E-value=4.6e+02 Score=23.76 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
.+++.+.+|.|+..+=++-.+.+-.+.+.++..--| +..+|+= .|.++++.+.+... .++++|--
T Consensus 19 ~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~------------~~~vGAG-TVl~~e~a~~ai~a--GA~FivSP 83 (201)
T PRK06015 19 VPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVE------------EAIVGAG-TILNAKQFEDAAKA--GSRFIVSP 83 (201)
T ss_pred HHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCC------------CCEEeeE-eCcCHHHHHHHHHc--CCCEEECC
Q ss_pred CCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC----CHHHHHHHHHhh
Q 024251 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE----DVKAVLALKEYF 203 (270)
Q Consensus 140 ~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~----d~~~v~~l~~~~ 203 (270)
..+ +.++...+..+.-.+-.+-++.|+ ..+++.|+|-|=+-|- .++-++.|+..+
T Consensus 84 ~~~------~~vi~~a~~~~i~~iPG~~TptEi---~~A~~~Ga~~vK~FPa~~~GG~~yikal~~pl 142 (201)
T PRK06015 84 GTT------QELLAAANDSDVPLLPGAATPSEV---MALREEGYTVLKFFPAEQAGGAAFLKALSSPL 142 (201)
T ss_pred CCC------HHHHHHHHHcCCCEeCCCCCHHHH---HHHHHCCCCEEEECCchhhCCHHHHHHHHhhC
No 296
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=27.91 E-value=4.3e+02 Score=23.73 Aligned_cols=106 Identities=13% Similarity=0.063 Sum_probs=60.3
Q ss_pred eeeeeecCCccccCC-CCeEEE------EEEecChhhhhhhccccCCCceEEEeCCCCe-eec-hhhhhhccc-CCCceE
Q 024251 93 LDPLFIKEGEVYDSG-DRRVGS------IIEVSTPQELQQLQPADGQAENIVIDLPDWQ-VIP-AENIVASFQ-GSGKTV 162 (270)
Q Consensus 93 i~~l~~~~g~~~~~~-gk~v~~------~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWt-iIP-lENlIA~~q-~~~~~i 162 (270)
|..|.+.+|..++.. |.+--+ +....+|.++-+.-... .++.+.+-..|=. --| -..+|.++- ..+..+
T Consensus 4 IP~iDl~~g~~Vr~~~G~~~~~~~~~~~~~~~~dP~~~a~~~~~~-g~~~l~ivDLd~~~~~~~n~~~i~~i~~~~~v~v 82 (221)
T TIGR00734 4 IPVIDLKDGIAVAGKSGERESYPPLESVSRLSSSPDDAAKVIEEI-GARFIYIADLDRIVGLGDNFSLLSKLSKRVELIA 82 (221)
T ss_pred EEEEEeeCCEEEEccccCcccccccccceecCCCHHHHHHHHHHc-CCCEEEEEEcccccCCcchHHHHHHHHhhCcEEE
Confidence 445667788777643 322111 23456777655533332 3454444333321 111 112233321 124568
Q ss_pred EEEcCCHHHHHHHHHHHhcccCeEEEecC---CHHHHHHHH
Q 024251 163 FAISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALK 200 (270)
Q Consensus 163 ~a~v~~~~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~ 200 (270)
=..+++.++++.++..|+. +|=|++.+. ||+.++++.
T Consensus 83 gGGirs~e~~~~~~~~l~~-a~rvvigT~a~~~p~~l~~~~ 122 (221)
T TIGR00734 83 DCGVRSPEDLETLPFTLEF-ASRVVVATETLDITELLRECY 122 (221)
T ss_pred cCccCCHHHHHHHHhhhcc-ceEEeecChhhCCHHHHHHhh
Confidence 8899999999999888877 999999985 666666554
No 297
>PRK10864 putative methyltransferase; Provisional
Probab=27.62 E-value=3.5e+02 Score=26.56 Aligned_cols=124 Identities=8% Similarity=0.106 Sum_probs=67.3
Q ss_pred CCCcEEEEEeCchhHHHHHHHhC---CcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhh
Q 024251 48 SKPKRVWIWTESKQVMTAAVERG---WNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (270)
Q Consensus 48 ~~~K~vWiw~~~Ke~vT~ALEsG---~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e 124 (270)
.++++.|||= +..|..||+++ +..+++..+... +...+-. .+...++ -+.+-+.+.++
T Consensus 104 ~~~~~~~I~G--~~aV~ealk~~~~~i~~l~~~~~~~~---~~~~il~----------~~~~~~~----~v~~V~~~~l~ 164 (346)
T PRK10864 104 QRAEETRVYG--ENACQALFQSRPEAIVRAWFIQSVTP---RFKEALR----------WMAANRK----AYHVVDEAELT 164 (346)
T ss_pred ccCCCcEEEE--HHHHHHHHhCCCCceeEEEEecCccH---HHHHHHH----------HHHHcCC----cEEEeCHHHHH
Confidence 5678889976 99999999875 345555543111 1111100 0011122 12345777778
Q ss_pred hhccccCCCceEEEeCCCCeeechhhhhhcccCCC-ceEEEEcCCHHHHHHHHH-HHhcccCeEEEecC
Q 024251 125 QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSG-KTVFAISKTPSEAQIFLE-ALEQGLGGIVLKVE 191 (270)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~-~~i~a~v~~~~eA~~~l~-~LE~G~DGVvl~~~ 191 (270)
.+.... .+.-|+.........++|+++....... .=++-.+.|+.-.-..+. +.--|++||++...
T Consensus 165 kls~~~-~hqGV~A~v~~~~~~~l~~~l~~~~~~~~vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~~~ 232 (346)
T PRK10864 165 KASGTE-HHGGVCFLIKKRNGTDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDA 232 (346)
T ss_pred HHhCCC-CCCeEEEEEeCCCCCCHHHHhhccccCCeEEEEeCCCCCCcHHHHHHHHHHhCCCEEEECCC
Confidence 777653 3344444444444557888776532211 123345566655444444 44579999999754
No 298
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=27.60 E-value=98 Score=28.15 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=25.9
Q ss_pred CCCcEEEEEe---CchhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT---ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~---~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
.+.+.+++|| .+.+.+...++-|+|+++.+.
T Consensus 243 ~~Gl~v~~WTv~~n~~~~~~~l~~~GVdgIiTD~ 276 (286)
T cd08606 243 RSGLVCVSYGVLNNDPENAKTQVKAGVDAVIVDS 276 (286)
T ss_pred HCCcEEEEECCccCCHHHHHHHHHcCCCEEEECC
Confidence 3567899997 358899999999999999865
No 299
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=27.55 E-value=57 Score=32.27 Aligned_cols=66 Identities=15% Similarity=0.054 Sum_probs=38.4
Q ss_pred ChhhhhhhccccC---CCceEEEeCCCCeeechhhhhhcccCCC--ce-EEEEcCCHHHHHHHHHHHhcccCeEE
Q 024251 119 TPQELQQLQPADG---QAENIVIDLPDWQVIPAENIVASFQGSG--KT-VFAISKTPSEAQIFLEALEQGLGGIV 187 (270)
Q Consensus 119 ~~ed~e~~~~~~~---~~~~vvv~~~DWtiIPlENlIA~~q~~~--~~-i~a~v~~~~eA~~~l~~LE~G~DGVv 187 (270)
.++|++.+..... ..|+++|+...=--.=.-+.|..+...- .. |...|.+++-|+ ..++.|+|+|-
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~---~Li~aGAD~vK 177 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVE---ELILSGADIVK 177 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHH---HHHHcCCCEEE
Confidence 4577777766654 5899999887433333334444333222 22 333455555554 45668999984
No 300
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=27.35 E-value=1.2e+02 Score=30.75 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=48.5
Q ss_pred CCCceEEEeCC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 131 GQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 131 ~~~~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
...+++.+.+- -=.+.-+..+++.+...+..|++.+.+++-.+-+-++++. +||+++.+.|..
T Consensus 183 ~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~-~dgi~iG~gDL~ 247 (473)
T TIGR01064 183 QGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEA-SDGIMVARGDLG 247 (473)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhh-CCcEEEchHHHH
Confidence 34788888654 1235566677766542467899999999999999999977 899999999864
No 301
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=27.29 E-value=1.3e+02 Score=29.15 Aligned_cols=33 Identities=30% Similarity=0.253 Sum_probs=23.6
Q ss_pred ceEEEEcCCH----HHHHHHHHHHhcccCeEEEecCC
Q 024251 160 KTVFAISKTP----SEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 160 ~~i~a~v~~~----~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
.+++.++.+. +||..++..+-.|+|||.|+.-+
T Consensus 201 ~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~ 237 (343)
T PRK08662 201 VPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPS 237 (343)
T ss_pred CCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCC
Confidence 3688888887 55555555444599999999933
No 302
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=26.77 E-value=77 Score=28.80 Aligned_cols=37 Identities=16% Similarity=0.376 Sum_probs=25.9
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEE
Q 024251 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 149 ENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
+.+++.++..+-++.+ .|+++++++. .++.|+|||+-
T Consensus 221 ~~~v~~~~~~G~~v~vWTVNd~~~~~~---l~~~GVdgIiT 258 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVLNDEEDFEE---AFDLGADGVMT 258 (264)
T ss_pred HHHHHHHHhcCCcEEEEEECCHHHHHH---HHhcCCCEEEe
Confidence 4677777766655544 5777777774 56789999873
No 303
>PRK10651 transcriptional regulator NarL; Provisional
Probab=26.00 E-value=3.5e+02 Score=21.68 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=37.4
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++......-.+ .++..++. ....++.... ..+.......++.|++|++..|-+..++.+.
T Consensus 52 ~~dlvl~d~~l~~~~~~-~~~~~l~~~~~~~~vi~l~~-~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~ 119 (216)
T PRK10651 52 DPDLILLDLNMPGMNGL-ETLDKLREKSLSGRIVVFSV-SNHEEDVVTALKRGADGYLLKDMEPEDLLKA 119 (216)
T ss_pred CCCEEEEeCCCCCCcHH-HHHHHHHHhCCCCcEEEEeC-CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 45777775433222111 22322222 2334544443 3334455688899999999999988776543
No 304
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=25.81 E-value=62 Score=26.83 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=17.2
Q ss_pred chhHHHHHHHhCCcEEEEc
Q 024251 59 SKQVMTAAVERGWNTFVFL 77 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~ 77 (270)
+.+.+..|++.|+|+|++-
T Consensus 41 ~~~~il~Af~~GADGV~V~ 59 (124)
T PF02662_consen 41 DPEFILRAFEKGADGVLVA 59 (124)
T ss_pred CHHHHHHHHHcCCCEEEEe
Confidence 5889999999999999994
No 305
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=25.41 E-value=2.7e+02 Score=23.49 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCceEEEeCCCCeeechh----hhhhcccCC---CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHH
Q 024251 132 QAENIVIDLPDWQVIPAE----NIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKA 195 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlE----NlIA~~q~~---~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~ 195 (270)
..+++-++..|-..+|.. .+++++... ...+-..++|+.+ .+-.+.+.|+|||.++-...++
T Consensus 25 G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~--~~~~~~~~g~dgv~vh~~~~~~ 93 (211)
T cd00429 25 GADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPER--YIEAFAKAGADIITFHAEATDH 93 (211)
T ss_pred CCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHH--HHHHHHHcCCCEEEECccchhh
Confidence 467888877776665544 456555432 1123355566643 3555669999999887654333
No 306
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=25.36 E-value=83 Score=31.89 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=49.7
Q ss_pred EEEEEEecChhhhhhhcccc-CCCceEEEeCCCCeeechhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHHhcccCeE
Q 024251 111 VGSIIEVSTPQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGI 186 (270)
Q Consensus 111 v~~~v~V~~~ed~e~~~~~~-~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a~-v~~~~eA~~~l~~LE~G~DGV 186 (270)
++..+.+. ++..+.+.... ...+.++++..+-.-....++|..+... +.-|++. +.+.++|+.+. +.|+|+|
T Consensus 216 Vgaav~~~-~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~---~~G~d~i 291 (475)
T TIGR01303 216 IGAAVGIN-GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLL---EAGANII 291 (475)
T ss_pred ehheeeeC-ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHH---HhCCCEE
Confidence 44444442 34435544444 3589999999987778899999988765 4556665 66666666554 6899999
Q ss_pred E
Q 024251 187 V 187 (270)
Q Consensus 187 v 187 (270)
-
T Consensus 292 ~ 292 (475)
T TIGR01303 292 K 292 (475)
T ss_pred E
Confidence 7
No 307
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=24.79 E-value=1.9e+02 Score=18.88 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 170 SEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 170 ~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
.........++.|+++++..|-+..++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~ 107 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLA 107 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHH
Confidence 34566667888999999999998876544
No 308
>PRK15452 putative protease; Provisional
Probab=24.67 E-value=4.2e+02 Score=26.73 Aligned_cols=86 Identities=9% Similarity=0.172 Sum_probs=54.7
Q ss_pred EEEEecChhhhhhhccccCCCceEEEeCC---------CCeeechhhhhhcccCCCceEEEEcCCH---HHHHHH----H
Q 024251 113 SIIEVSTPQELQQLQPADGQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAISKTP---SEAQIF----L 176 (270)
Q Consensus 113 ~~v~V~~~ed~e~~~~~~~~~~~vvv~~~---------DWtiIPlENlIA~~q~~~~~i~a~v~~~---~eA~~~----l 176 (270)
..+.+.+.+.+..+.. ..+|.|.+-+. +|+.=-++..+..++..+.+++..++.. +|-..+ -
T Consensus 6 Llapag~~e~l~aAi~--~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~ 83 (443)
T PRK15452 6 LLSPAGTLKNMRYAFA--YGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLE 83 (443)
T ss_pred EEEECCCHHHHHHHHH--CCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHH
Confidence 4556778887766554 35788888443 3443345666666667777898886554 333222 3
Q ss_pred HHHhcccCeEEEecCCHHHHHHHHHh
Q 024251 177 EALEQGLGGIVLKVEDVKAVLALKEY 202 (270)
Q Consensus 177 ~~LE~G~DGVvl~~~d~~~v~~l~~~ 202 (270)
...+.|+|||++. |++.+.-+++.
T Consensus 84 ~l~~~gvDgvIV~--d~G~l~~~ke~ 107 (443)
T PRK15452 84 PVIAMKPDALIMS--DPGLIMMVREH 107 (443)
T ss_pred HHHhCCCCEEEEc--CHHHHHHHHHh
Confidence 3456799999975 57777666663
No 309
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=24.51 E-value=5.2e+02 Score=23.25 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=59.9
Q ss_pred eeeeeeecCCccccC-CCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCC-----eeec-hhhhhhcccCCCceEEE
Q 024251 92 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW-----QVIP-AENIVASFQGSGKTVFA 164 (270)
Q Consensus 92 ~i~~l~~~~g~~~~~-~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DW-----tiIP-lENlIA~~q~~~~~i~a 164 (270)
+|..|.+.+|..+.. +|++ .-+-...+|.++-..-.. ..++.+.+-..|= ..++ +++|.... +-+..+=.
T Consensus 6 iIP~idl~~G~~V~~~~g~~-~~~~~~~dp~~~a~~~~~-~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~-~~pv~vgG 82 (241)
T PRK14024 6 LLPAVDVVDGQAVRLVQGEA-GSETSYGSPLDAALAWQR-DGAEWIHLVDLDAAFGRGSNRELLAEVVGKL-DVKVELSG 82 (241)
T ss_pred EEEEEEeECCEEEEeecccc-cCceECCCHHHHHHHHHH-CCCCEEEEEeccccCCCCccHHHHHHHHHHc-CCCEEEcC
Confidence 455577788876643 3431 122233477765554444 3345444433331 1111 22333332 23345667
Q ss_pred EcCCHHHHHHHHHHHhcccCeEEEecC---CHHHHHHHHHhh
Q 024251 165 ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (270)
Q Consensus 165 ~v~~~~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~~~~ 203 (270)
.++|.|+++.++. .|++-+++-+. ||+-++++.+.+
T Consensus 83 Girs~edv~~~l~---~Ga~kvviGs~~l~~p~l~~~i~~~~ 121 (241)
T PRK14024 83 GIRDDESLEAALA---TGCARVNIGTAALENPEWCARVIAEH 121 (241)
T ss_pred CCCCHHHHHHHHH---CCCCEEEECchHhCCHHHHHHHHHHh
Confidence 8999999998865 69999999885 777666655433
No 310
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=24.34 E-value=1.3e+02 Score=23.86 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=20.8
Q ss_pred EEEEcCCHHHH--HHHHHHHhcccCeEE
Q 024251 162 VFAISKTPSEA--QIFLEALEQGLGGIV 187 (270)
Q Consensus 162 i~a~v~~~~eA--~~~l~~LE~G~DGVv 187 (270)
|.....|++|| +..-++.+.|+|+|+
T Consensus 20 v~~~~~d~d~Al~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 20 VSTESDNVDEIVENLREKVKAKGGMGLI 47 (74)
T ss_pred EEEecCCHHHHHHHHHHHHHHcCCCEEE
Confidence 55677799988 556678899999998
No 311
>PLN02334 ribulose-phosphate 3-epimerase
Probab=23.91 E-value=5.1e+02 Score=22.95 Aligned_cols=109 Identities=12% Similarity=0.132 Sum_probs=61.5
Q ss_pred hhHHHHHHHhCCcEEEEcCcch----------hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 60 KQVMTAAVERGWNTFVFLSENQ----------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~----------e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
.+.++.+++.|++.+=++-.|. +.++++.++ ..+.+.+-+-|.+|++....+..
T Consensus 23 ~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~----------------~~~~~~vhlmv~~p~d~~~~~~~ 86 (229)
T PLN02334 23 AEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH----------------TDAPLDCHLMVTNPEDYVPDFAK 86 (229)
T ss_pred HHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhc----------------CCCcEEEEeccCCHHHHHHHHHH
Confidence 5688999999999887765332 222232222 12334567778888876555543
Q ss_pred cCCCceEEEeCC-CCeeechhhhhhcccCCCceEEEEcC--CHHHHHHHHHHHhcc-cCeEEE
Q 024251 130 DGQAENIVIDLP-DWQVIPAENIVASFQGSGKTVFAISK--TPSEAQIFLEALEQG-LGGIVL 188 (270)
Q Consensus 130 ~~~~~~vvv~~~-DWtiIPlENlIA~~q~~~~~i~a~v~--~~~eA~~~l~~LE~G-~DGVvl 188 (270)
.+++.+.+... +-.--|.+.+ ..+.+.+.++-..++ ++.|. +...++.| +|-|++
T Consensus 87 -~gad~v~vH~~q~~~d~~~~~~-~~i~~~g~~iGls~~~~t~~~~--~~~~~~~~~~Dyi~~ 145 (229)
T PLN02334 87 -AGASIFTFHIEQASTIHLHRLI-QQIKSAGMKAGVVLNPGTPVEA--VEPVVEKGLVDMVLV 145 (229)
T ss_pred -cCCCEEEEeeccccchhHHHHH-HHHHHCCCeEEEEECCCCCHHH--HHHHHhccCCCEEEE
Confidence 45788866555 2233444443 333344445555554 33433 33455664 998855
No 312
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=23.74 E-value=4.9e+02 Score=22.68 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=73.2
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
..+-+..|+..|++.|=++= .+ .+-|.+ +..-|..+-.-.|.. + .+.=.+-+++..+.......+
T Consensus 17 T~~Af~~A~~~g~~~vE~DV---~~-TkDg~~-----Vv~HD~~l~r~t~~~-~-~i~~~t~~el~~l~~~~~~~~---- 81 (230)
T cd08563 17 TLLAFKKAIEAGADGIELDV---HL-TKDGQL-----VVIHDETVDRTTNGK-G-YVKDLTLEELKKLDAGSWFDE---- 81 (230)
T ss_pred hHHHHHHHHHcCCCEEEEEe---eE-cCCCCE-----EEECCCCcccccCCC-C-chhhCCHHHHHhcCCCCccCc----
Confidence 36778899999999875542 01 111211 222333322111111 1 112224444444332211111
Q ss_pred eCCCCeeechhhhhhcccCCCceEEEEcCCHHH-----HHHHHHHHhcc--cCeEEEecCCHHHHHHHHHhh
Q 024251 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSE-----AQIFLEALEQG--LGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~e-----A~~~l~~LE~G--~DGVvl~~~d~~~v~~l~~~~ 203 (270)
.+..-++.-|+.+++.+.+.+..++.+.++... .+.++..+++- .+.+++..-|+..++.+++..
T Consensus 82 ~~~~~~iptL~evl~~~~~~~~~l~leiK~~~~~~~~~~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~ 153 (230)
T cd08563 82 KFTGEKIPTLEEVLDLLKDKDLLLNIEIKTDVIHYPGIEKKVLELVKEYNLEDRVIFSSFNHESLKRLKKLD 153 (230)
T ss_pred cCCCCcCCCHHHHHHHHHhcCcEEEEEECCCCCcChhHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHC
Confidence 123446677999999987667789999997532 34455555543 688999999999888887754
No 313
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=23.66 E-value=1e+02 Score=28.11 Aligned_cols=30 Identities=3% Similarity=0.076 Sum_probs=24.3
Q ss_pred CCCcEEEEEe---CchhHHHHHHHhCCcEEEEc
Q 024251 48 SKPKRVWIWT---ESKQVMTAAVERGWNTFVFL 77 (270)
Q Consensus 48 ~~~K~vWiw~---~~Ke~vT~ALEsG~d~~vv~ 77 (270)
.....+.+|| .+++.|...++.|+|+++.+
T Consensus 248 ~~Gl~v~vWTv~~n~~~~~~~l~~~GVdgIiTD 280 (282)
T cd08605 248 ASGLELGTYGKLNNDAEAVERQADLGVDGVIVD 280 (282)
T ss_pred HcCcEEEEeCCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3566789998 46888999999999998864
No 314
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=23.59 E-value=4e+02 Score=27.78 Aligned_cols=130 Identities=12% Similarity=0.169 Sum_probs=72.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccce--eeeeeeee-c-CCccccCCCCeEEEEEEecChhhhhhhccccCCCc
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTI--ALLDPLFI-K-EGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i--~~i~~l~~-~-~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
+.+++..|+.||+++|+++-||. .+..|.+. ++++..-. . +-+.-.++||..- +.+ +..
T Consensus 76 ~~km~~nAlnsgAd~~m~D~EDa-~aPtwkn~i~gq~nl~~al~~~i~~~~~~gk~y~----l~~------------~~~ 138 (511)
T cd00727 76 DRKMVINALNSGAKVFMADFEDA-NAPTWENQVEGQINLRDAVRGTISFTSPEGKEYK----LND------------TPA 138 (511)
T ss_pred CHHHHHHHhcCCCCEEEeCcccC-CCCChHHHHHHHHHHHHHhcCCCCccCCCCceee----eCC------------CCc
Confidence 48899999999999999987763 23333333 22221111 1 1111123455321 110 112
Q ss_pred eEEEeCCCCeee---------------------chhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHh---------cc
Q 024251 135 NIVIDLPDWQVI---------------------PAENIVASFQGS--GKTVFAISKTPSEAQIFLEALE---------QG 182 (270)
Q Consensus 135 ~vvv~~~DWtiI---------------------PlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE---------~G 182 (270)
.++|.-++|..- =..|+.+-+... ..=++-.+.+++|++..-.++. .|
T Consensus 139 ~l~VRprG~hl~e~hv~~dg~~~~~~l~Dfgl~~fhd~~~l~~~g~gpyi~LPKves~~Ev~~~~~vf~~~E~~lGlp~G 218 (511)
T cd00727 139 TLIVRPRGWHLPEKHVLVDGEPVSGSLFDFGLYFFHNAKALLARGSGPYFYLPKMESHLEARLWNDVFVFAQDYLGLPRG 218 (511)
T ss_pred EEEEecCCCCCCcchhhcCCccCcchhhhHHHHHHhhHHHHHhcCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344444444322 225554433221 2345667889999987766653 36
Q ss_pred cCeEEEecCCHHHHHHHHHhhcc
Q 024251 183 LGGIVLKVEDVKAVLALKEYFDG 205 (270)
Q Consensus 183 ~DGVvl~~~d~~~v~~l~~~~~~ 205 (270)
.=++..--+.+..+..+.+++..
T Consensus 219 tIki~vLIET~~A~~nm~EIa~a 241 (511)
T cd00727 219 TIKATVLIETLPAAFEMDEILYE 241 (511)
T ss_pred ceEEEEEecCHHHHHHHHHHHHh
Confidence 66677777888888888888743
No 315
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=23.48 E-value=3.7e+02 Score=26.76 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=41.3
Q ss_pred hhhhhhhcccc-CCCceEEEeCCCCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 120 PQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 120 ~ed~e~~~~~~-~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
+++++++.... +..+.+.|+...-.-.=+.+.|+.+... +..|++ .+.++++|+.+. +.|+|+|-+.
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~---~aGad~i~vg 293 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALI---DAGADGLRVG 293 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHH---HhCCCEEEEC
Confidence 44555544433 4588999987543223344555554433 345555 788888888766 4799999654
No 316
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.47 E-value=1.4e+02 Score=28.20 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=43.4
Q ss_pred CCeEEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEE-EEcCCHHHHHHHHHHHhcccCeE
Q 024251 108 DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVF-AISKTPSEAQIFLEALEQGLGGI 186 (270)
Q Consensus 108 gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~-a~v~~~~eA~~~l~~LE~G~DGV 186 (270)
++.++ +++.+.|+..++.. ..+||+.++ .+++|.|-...+..+.++. ...... ..+-+-+.++.|+|||
T Consensus 188 ~~~Ig--vsv~tleea~~A~~--~gaDyI~lD-----~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~I 257 (277)
T PRK08072 188 MVKIE--VETETEEQVREAVA--AGADIIMFD-----NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTGVDYI 257 (277)
T ss_pred CCEEE--EEeCCHHHHHHHHH--cCCCEEEEC-----CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEE
Confidence 34444 45677777666553 568999994 3777777655543332232 222222 2344556778999999
Q ss_pred EEec
Q 024251 187 VLKV 190 (270)
Q Consensus 187 vl~~ 190 (270)
.+..
T Consensus 258 Avg~ 261 (277)
T PRK08072 258 SLGF 261 (277)
T ss_pred EECh
Confidence 8753
No 317
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=23.18 E-value=1.7e+02 Score=28.08 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred eeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCC-----CceEEEEcCCH
Q 024251 95 PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS-----GKTVFAISKTP 169 (270)
Q Consensus 95 ~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~-----~~~i~a~v~~~ 169 (270)
|+|.-+.-.++.+|+++.-++ -++||++......++...=+-...+=+++|||+||..++.. -.+.|..+.+-
T Consensus 181 PlF~~~~Lti~~~n~~~iP~F--F~Kedlq~~L~~~kkq~p~l~~~~~I~V~~Le~vi~~m~~~~~~~~~~~~I~l~Ps~ 258 (270)
T TIGR00995 181 PVFQSGLLVVQKKNERYCPVY--FSKEDIEQELSKFKRESPGMADSQVIMVGSMEDVLSKMETSEKDSGWEDQIFIPPGQ 258 (270)
T ss_pred cEEeecceEEEeCCeEEEeeE--eeHHHHHHHHHHHhHhCcCcCCCccEEEEeHHHHHHHHhccCCCCcccceEEECCCH
Q ss_pred HHHHHHHHHHhc
Q 024251 170 SEAQIFLEALEQ 181 (270)
Q Consensus 170 ~eA~~~l~~LE~ 181 (270)
|-.+..-+.-+.
T Consensus 259 e~~~~iq~~~~~ 270 (270)
T TIGR00995 259 EAIQHMQSLIAQ 270 (270)
T ss_pred HHHHHHHHHhcC
No 318
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=23.18 E-value=4.9e+02 Score=22.46 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=65.1
Q ss_pred cEEEEEe--CchhHHHHHHHhCCcEEEEcCc-chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhc
Q 024251 51 KRVWIWT--ESKQVMTAAVERGWNTFVFLSE-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ 127 (270)
Q Consensus 51 K~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~-~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~ 127 (270)
+.+-+-. +-.++...|.+.|+|.+=+..+ +.+.++++.+.- |.++-..+.+.+..+++...
T Consensus 52 ~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~----------------~~~~i~~i~~~~~~~~~~~~ 115 (203)
T cd00405 52 KRVGVFVNEDLEEILEIAEELGLDVVQLHGDESPEYCAQLRARL----------------GLPVIKAIRVKDEEDLEKAA 115 (203)
T ss_pred cEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc----------------CCcEEEEEecCChhhHHHhh
Confidence 4444433 3477788899999999866644 345555554320 11111224556665544433
Q ss_pred cccCCCceEEEeCCC-------CeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcc-cCeEEEecC
Q 024251 128 PADGQAENIVIDLPD-------WQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQG-LGGIVLKVE 191 (270)
Q Consensus 128 ~~~~~~~~vvv~~~D-------WtiIPlENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G-~DGVvl~~~ 191 (270)
.....+||+++++.. .+.+++|-| ..+. ....+++ .==|++-...+ ++.| ++||-+.+.
T Consensus 116 ~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l-~~~~-~~~PvilaGGI~~~Nv~~~---i~~~~~~gvdv~S~ 183 (203)
T cd00405 116 AYAGEVDAILLDSKSGGGGGGTGKTFDWSLL-RGLA-SRKPVILAGGLTPDNVAEA---IRLVRPYGVDVSSG 183 (203)
T ss_pred hccccCCEEEEcCCCCCCCCCCcceEChHHh-hccc-cCCCEEEECCCChHHHHHH---HHhcCCCEEEcCCc
Confidence 333567899998752 356666544 3333 2223332 22255555444 4566 888877553
No 319
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.14 E-value=1.6e+02 Score=24.11 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=21.8
Q ss_pred CceEEEEcCCH-------HHHHHHHHHHhcccCeEEEecC
Q 024251 159 GKTVFAISKTP-------SEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 159 ~~~i~a~v~~~-------~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+..+++.+... +-.+.+-.+.+.|+|+|++.+.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~ 87 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVIN 87 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEecc
Confidence 34556555442 3445566778889999998754
No 320
>COG4022 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.07 E-value=1.9e+02 Score=27.82 Aligned_cols=100 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred hHHHHHHHhC-CcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 61 QVMTAAVERG-WNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 61 e~vT~ALEsG-~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
|+|.++|+.| .|+.|.-.+-+..+ +..+..++.+-|-+.--+ -.-+-+++.........-++++
T Consensus 84 Eimmt~L~~g~lDaaV~vcDgAGTV------------Is~nP~lvQGigGriSGl---veT~Pi~eVI~rie~~gg~VL~ 148 (286)
T COG4022 84 EIMMTGLKRGLLDAAVTVCDGAGTV------------ISSNPALVQGIGGRISGL---VETEPIDEVIDRIEKSGGIVLD 148 (286)
T ss_pred HHHHHHHhhcccceEEEEecCcccE------------ecCCHHHHhhcccceecc---ccCCchHHHHHhhhhcCceeeC
Q ss_pred CCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHH
Q 024251 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIF 175 (270)
Q Consensus 140 ~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~ 175 (270)
..--+|=|.|-+=-++.-...+|...+.|+++|+..
T Consensus 149 ~~ta~Idq~~GVkkA~ElgykkvAVTvada~~Ak~l 184 (286)
T COG4022 149 PKTATIDQVEGVKKAAELGYKKVAVTVADAETAKRL 184 (286)
T ss_pred ccccccchhhhHHHHHHcCcceEEEEecCHHHHHHH
No 321
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=23.06 E-value=1.9e+02 Score=24.82 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcccCeEEEecCCHH
Q 024251 170 SEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 170 ~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
.+.+.+-..+.+++|||++.+.+.+
T Consensus 43 ~~~~~i~~l~~~~vdgiIi~~~~~~ 67 (273)
T cd06309 43 NQISAIRSFIAQGVDVIILAPVVET 67 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCccc
Confidence 3445555677889999999987654
No 322
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=22.81 E-value=91 Score=26.35 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCCcEEEEEe-Cch--hHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-ESK--QVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-~~K--e~vT~ALEsG~d~~vv~~ 78 (270)
++.+.+.+|+ .+. +.+..+++.|+|+|+.+.
T Consensus 220 ~~g~~v~~wtvn~~~~~~~~~l~~~gvdgIiTD~ 253 (256)
T PF03009_consen 220 KAGLKVYVWTVNDPDVEDMKRLLDLGVDGIITDF 253 (256)
T ss_dssp HTT-EEEEBSB-SHSHHHHHHHHHHT-SEEEES-
T ss_pred HCCCEEEEEecCCcHHHHHHHHHhCCCCEEEEcC
Confidence 5668899999 456 799999999999999764
No 323
>PRK14725 pyruvate kinase; Provisional
Probab=22.77 E-value=1.3e+02 Score=31.86 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=56.3
Q ss_pred ChhhhhhhccccCCCceEEEeCC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcc----cCeEEEecCC
Q 024251 119 TPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQG----LGGIVLKVED 192 (270)
Q Consensus 119 ~~ed~e~~~~~~~~~~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G----~DGVvl~~~d 192 (270)
+.+|.+.+.-.....|+|-+.|- -=.|.-+.+++.+..+.+..||+...+.+.-+-+-++++.+ +|||++.-.|
T Consensus 431 TekD~~dl~f~~~~vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGD 510 (608)
T PRK14725 431 TDKDLEDLAFVAKHADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGD 510 (608)
T ss_pred CHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCc
Confidence 34444443322233799888774 34477888888876555678999999999999888888877 8999999888
Q ss_pred HH
Q 024251 193 VK 194 (270)
Q Consensus 193 ~~ 194 (270)
.+
T Consensus 511 Lg 512 (608)
T PRK14725 511 LA 512 (608)
T ss_pred cc
Confidence 53
No 324
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=22.57 E-value=1.5e+02 Score=29.74 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=37.5
Q ss_pred hhhhhhhcccc-CCCceEEEeCCCCeeechhhhhhcccCC--Cce-EEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 120 PQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKT-VFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 120 ~ed~e~~~~~~-~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~-i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
+++++.+..+. ...+.++++..+=...-.-..+..+... +.. ++..+.++++|+.+. +.|+|+|-+
T Consensus 227 ~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~---~aGad~i~v 296 (486)
T PRK05567 227 ADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALI---EAGADAVKV 296 (486)
T ss_pred cchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHH---HcCCCEEEE
Confidence 34555554443 3578888876533223233334444333 233 456677777776655 579999975
No 325
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=22.48 E-value=1.4e+02 Score=28.38 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=25.1
Q ss_pred cEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 51 KRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 51 K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
++|.+|| .+.+.+...++.|+|+++....
T Consensus 210 ~kV~vWTVn~~~~~~~ll~~GVDGIITD~P 239 (265)
T cd08576 210 GKVYGWTSDKGSSVRKLLRLGVDGIITNYP 239 (265)
T ss_pred CeEEEEeCCCHHHHHHHHhcCCCEEEECCH
Confidence 4899999 5689999999999999998653
No 326
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.22 E-value=78 Score=30.08 Aligned_cols=107 Identities=20% Similarity=0.288 Sum_probs=62.6
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc------------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC--hhhh
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN------------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST--PQEL 123 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~------------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~--~ed~ 123 (270)
++++++..|.+.|++.+|..+.+ ++.++++-.+.....+ |=++++ |.. +.|++ -+++
T Consensus 21 esl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~ai---dl~v~p--GQE----IrIt~~vl~~l 91 (254)
T COG4464 21 ESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAI---DLKVLP--GQE----IRITGDVLDDL 91 (254)
T ss_pred HHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcC---Cceecc--Cce----EEEchHHHHHH
Confidence 57899999999999999998754 3445555544332110 112223 222 23332 1222
Q ss_pred hh-hccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHH
Q 024251 124 QQ-LQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKA 195 (270)
Q Consensus 124 e~-~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~ 195 (270)
+. ....+...+|++|+|.-=+ |.++ -.+++++.+-+|--=|+-.|+.-.+
T Consensus 92 ~~g~I~tindskYlLIEF~~~~--v~~y--------------------a~~lf~elq~kGi~PIIAHPERn~~ 142 (254)
T COG4464 92 DKGIILTINDSKYLLIEFPMNH--VPRY--------------------ADQLFFELQSKGIIPIIAHPERNRA 142 (254)
T ss_pred hcCccccccccceEEEEccCCc--chhh--------------------HHHHHHHHHHCCceeeeechhhHHH
Confidence 22 2333445689999886321 1221 2467888899999999999885443
No 327
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=22.10 E-value=2.9e+02 Score=23.38 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcccCeEEEecCCH
Q 024251 170 SEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 170 ~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
.+.+..-..+++|+|||++.+.+.
T Consensus 43 ~~~~~~~~l~~~~vdgiIi~~~~~ 66 (265)
T cd06299 43 TENRYLDNLLSQRVDGIIVVPHEQ 66 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCC
Confidence 344555567788999999987653
No 328
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=22.05 E-value=1.4e+02 Score=27.09 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 170 SEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 170 ~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
.+.+.+-..+.+|+|||++.|.|+..+....+
T Consensus 79 ~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~ 110 (322)
T COG1879 79 KQIAQIEDLIAQGVDAIIINPVDPDALTPAVK 110 (322)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCChhhhHHHHH
Confidence 45555666679999999999999986655433
No 329
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=21.91 E-value=7.3e+02 Score=24.32 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=44.1
Q ss_pred CCeEEEEEEecChhhhhhhccccCCCceEEEeCCCC-------eeechhhhhhcccCCCceEEEEcC-CHHHHHHHHHHH
Q 024251 108 DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW-------QVIPAENIVASFQGSGKTVFAISK-TPSEAQIFLEAL 179 (270)
Q Consensus 108 gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DW-------tiIPlENlIA~~q~~~~~i~a~v~-~~~eA~~~l~~L 179 (270)
++-+|+. +.+.+++..+.. ..+||+.+..--. +...+|.+=...+..+..+||.=. +++.+ -+++
T Consensus 240 ~~iIG~S--~Hs~~e~~~A~~--~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~~~ni---~~l~ 312 (347)
T PRK02615 240 EKIIGRS--TTNPEEMAKAIA--EGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGIDKSNI---PEVL 312 (347)
T ss_pred CCEEEEe--cCCHHHHHHHHH--cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHH---HHHH
Confidence 4445544 457776655543 3689998732211 233345544444445567787753 45544 4677
Q ss_pred hcccCeEEEec
Q 024251 180 EQGLGGIVLKV 190 (270)
Q Consensus 180 E~G~DGVvl~~ 190 (270)
+.|+|||.+-.
T Consensus 313 ~~Ga~gVAvis 323 (347)
T PRK02615 313 QAGAKRVAVVR 323 (347)
T ss_pred HcCCcEEEEeH
Confidence 88999998643
No 330
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=21.81 E-value=91 Score=28.89 Aligned_cols=30 Identities=23% Similarity=0.097 Sum_probs=24.6
Q ss_pred CCCcEEEEEe-Cc---------hhHHHHHHHh-CCcEEEEc
Q 024251 48 SKPKRVWIWT-ES---------KQVMTAAVER-GWNTFVFL 77 (270)
Q Consensus 48 ~~~K~vWiw~-~~---------Ke~vT~ALEs-G~d~~vv~ 77 (270)
...+++++|| .+ .+.+...++. |+|+++.+
T Consensus 254 ~~Gl~v~~WTvn~~~~~~~~~~~~~~~~l~~~~GVdgIiTD 294 (296)
T cd08559 254 KAGLLVHPYTFRNENLFLAPDFKQDMDALYNAAGVDGVFTD 294 (296)
T ss_pred HcCCEEEEEEecCcccccccccccCHHHHHHHhCCCEEEcC
Confidence 3567899999 45 7889999998 99999864
No 331
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.67 E-value=98 Score=26.41 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 170 SEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 170 ~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
.+.+.+=..+.+|+|||++.|-|+.....
T Consensus 43 ~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~ 71 (257)
T PF13407_consen 43 EQIEQIEQAISQGVDGIIVSPVDPDSLAP 71 (257)
T ss_dssp HHHHHHHHHHHTTESEEEEESSSTTTTHH
T ss_pred HHHHHHHHHHHhcCCEEEecCCCHHHHHH
Confidence 55566666779999999999998864443
No 332
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.58 E-value=5.6e+02 Score=22.49 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=21.4
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhh
Q 024251 58 ESKQVMTAAVERGWNTFVFLSENQQL 83 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~~e~ 83 (270)
+-++++..+.|.|++++.+.+....+
T Consensus 22 d~~~~~~~~~~~g~~av~v~~~~~~~ 47 (235)
T cd00958 22 DPEETVKLAAEGGADAVALTKGIARA 47 (235)
T ss_pred CHHHHHHHHHhcCCCEEEeChHHHHh
Confidence 34789999999999999999765444
No 333
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=21.46 E-value=3.5e+02 Score=27.69 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=58.9
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEEcCcc---hhh---hhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhh
Q 024251 53 VWIWTESKQVMTAAVERGWNTFVFLSEN---QQL---AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQL 126 (270)
Q Consensus 53 vWiw~~~Ke~vT~ALEsG~d~~vv~~~~---~e~---a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~ 126 (270)
+..=+++.+.+..+++.|++.|-.+..+ .++ ++++..+.. +.++.+-|.+.-++-..
T Consensus 213 LY~Vtd~~~~ve~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~-----------------~~gv~LiIND~~dlAl~ 275 (437)
T PRK12290 213 LYPVVDDVEWIERLLPLGINTVQLRIKDPQQADLEQQIIRAIALGR-----------------EYNAQVFINDYWQLAIK 275 (437)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHH-----------------HhCCEEEEECHHHHHHH
Confidence 3333344568999999999999987644 222 223322211 11233445554332211
Q ss_pred ccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 127 QPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 127 ~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
-.++-|=+...|- |..++-+. .+.+-.|-..+.+.+|++. +.+.|+|=|.+-
T Consensus 276 ----~gAdGVHLGQeDL---~~~~aR~i-lg~~~iIGvStHs~eEl~~---A~~~gaDYI~lG 327 (437)
T PRK12290 276 ----HQAYGVHLGQEDL---EEANLAQL-TDAGIRLGLSTHGYYELLR---IVQIQPSYIALG 327 (437)
T ss_pred ----cCCCEEEcChHHc---chhhhhhh-cCCCCEEEEecCCHHHHHH---HhhcCCCEEEEC
Confidence 1233344433332 33333222 2334467788889998754 457899999884
No 334
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=21.32 E-value=2.3e+02 Score=26.76 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHhcccCeEEEecCC------HHHHHHHHHhhcc
Q 024251 168 TPSEAQIFLEALEQGLGGIVLKVED------VKAVLALKEYFDG 205 (270)
Q Consensus 168 ~~~eA~~~l~~LE~G~DGVvl~~~d------~~~v~~l~~~~~~ 205 (270)
.|+=.+.+.-+++.|+|||.++++. -.++..|++.+..
T Consensus 21 ~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~ 64 (239)
T PF03740_consen 21 YPDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKT 64 (239)
T ss_dssp -S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SS
T ss_pred CCCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHccc
Confidence 5566677888899999999999982 4678888887743
No 335
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=21.18 E-value=3.1e+02 Score=22.70 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=26.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
..++...... +......+++.|+++++.+|-+..++.+
T Consensus 82 ~pii~l~~~~-~~~~~~~~~~~ga~~~l~kp~~~~~L~~ 119 (240)
T PRK10710 82 IPIVMVTAKI-EEIDRLLGLEIGADDYICKPYSPREVVA 119 (240)
T ss_pred CCEEEEEcCC-CHHHHHHHHhcCCCeEEECCCCHHHHHH
Confidence 4455544433 3344568899999999999998877654
No 336
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=21.17 E-value=3.2e+02 Score=26.32 Aligned_cols=130 Identities=18% Similarity=0.262 Sum_probs=82.8
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeee-eeeeecCCc---------cccCCCCeEEEEEEecChhhhh
Q 024251 56 WTESKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALL-DPLFIKEGE---------VYDSGDRRVGSIIEVSTPQELQ 124 (270)
Q Consensus 56 w~~~Ke~vT~ALEsG~d~~vv~~~~-~e~a~~l~~i~~i-~~l~~~~g~---------~~~~~gk~v~~~v~V~~~ed~e 124 (270)
|...+.+++.+.+.|+.-|++.+.. +|...-+.+|++= .|++.++|. -.+..++.++-+..+.=..-++
T Consensus 25 ~~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~iaEnG~aI~~p~~~~~~~~~~r~~~g~~~~elg~~l~ 104 (274)
T COG3769 25 WQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAIYLPKGWFPFDGKPREISGISHIELGKVLE 104 (274)
T ss_pred CCccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCceeecCCceEEecccccccCCCCceecceEeeehhhhHH
Confidence 6678999999999999988877754 4666667777775 455556662 2245556555554444333333
Q ss_pred hhcccc----CCCceEEEeCC------CCeeechhhh-hhcccCCCceEEEEcCCHHHHHHHHHHHhcccCe
Q 024251 125 QLQPAD----GQAENIVIDLP------DWQVIPAENI-VASFQGSGKTVFAISKTPSEAQIFLEALEQGLGG 185 (270)
Q Consensus 125 ~~~~~~----~~~~~vvv~~~------DWtiIPlENl-IA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DG 185 (270)
.+.... ...+.+-.+.. .||=.|-|.. +|+.......|+-..++.-.|+.-..--|+|.-=
T Consensus 105 ~ire~l~kLee~~g~~~~~~~d~~ei~e~TGlpre~aaLa~~rEyseti~~rs~d~~~~~~~~~L~e~glt~ 176 (274)
T COG3769 105 KIREKLDKLEEHFGFTTFDDVDDEEIAEWTGLPREQAALAMLREYSETIIWRSSDERMAQFTARLNERGLTF 176 (274)
T ss_pred HHHHHHHHHHHHhCeeEeccCCHHHHHHHhCCChHHhHHHHHHHhhhheeecccchHHHHHHHHHHhcCceE
Confidence 333322 11233333222 4888888764 5666666678898888888888877777877653
No 337
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=21.11 E-value=41 Score=32.12 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=14.6
Q ss_pred hhHHHHHHHhCCcEEEEcC
Q 024251 60 KQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~ 78 (270)
.+.+..|.+-|+|++-+..
T Consensus 17 ~~~~~~a~~iG~na~~if~ 35 (280)
T COG0648 17 VNAVERAREIGLNAFEIFL 35 (280)
T ss_pred HHHHHHHHHcCCCEEEEEe
Confidence 5678888999999876643
No 338
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=20.43 E-value=1.3e+02 Score=27.29 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=24.3
Q ss_pred CCCcEEEEEeC---chhHHHHHHHhCCcEEEEc
Q 024251 48 SKPKRVWIWTE---SKQVMTAAVERGWNTFVFL 77 (270)
Q Consensus 48 ~~~K~vWiw~~---~Ke~vT~ALEsG~d~~vv~ 77 (270)
.+...+++|+- +.+.|...++.|+|+++.+
T Consensus 256 ~~Gl~v~~wTv~~n~~~~~~~l~~~GVdgIiTD 288 (290)
T cd08607 256 SLGLVVFCWGDDLNDPENRKKLKELGVDGLIYD 288 (290)
T ss_pred HcCCEEEEECCCCCCHHHHHHHHHcCCCEEEec
Confidence 35667999985 5888888999999998864
No 339
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=20.36 E-value=1.3e+02 Score=28.27 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=65.5
Q ss_pred EeCchhHHHHHH----HhCCcEEEEcCcch----hhhhhccceeeeeeeeecCCccccCCC-CeEEEEEEecChhhhhhh
Q 024251 56 WTESKQVMTAAV----ERGWNTFVFLSENQ----QLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQL 126 (270)
Q Consensus 56 w~~~Ke~vT~AL----EsG~d~~vv~~~~~----e~a~~l~~i~~i~~l~~~~g~~~~~~g-k~v~~~v~V~~~ed~e~~ 126 (270)
|++.++.+..|. ..|++.++++-++. +.+++-.++-.+..+-. -++-++..| |++|.+..-.+-++ .-.
T Consensus 57 w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIida-Ta~~ik~~g~kkvgLLgT~~Tm~~-~fY 134 (230)
T COG1794 57 WDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDA-TAKAIKAAGAKKVGLLGTRFTMEQ-GFY 134 (230)
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHH-HHHHHHhcCCceeEEeeccchHHh-HHH
Confidence 777677666554 46899999998763 44455555544443111 123344444 77777766555444 222
Q ss_pred ccccCCCc-eEEEeCCCCeeechhhhhhc-ccCCCceEEEEcCCHHH---HHHHHHHHhcccCeEEEecC
Q 024251 127 QPADGQAE-NIVIDLPDWQVIPAENIVAS-FQGSGKTVFAISKTPSE---AQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 127 ~~~~~~~~-~vvv~~~DWtiIPlENlIA~-~q~~~~~i~a~v~~~~e---A~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.+.. -+|+-..||+-.= -++|.+ +- .+ .+.+... .+++-..-++|+|||++-=.
T Consensus 135 ~~~l~~~gievvvPdd~~q~~v-~~iIy~El~--~G----~~~~~sr~~~~~ii~~l~~~Gae~vIlGCT 197 (230)
T COG1794 135 RKRLEEKGIEVVVPDDDEQAEV-NRIIYEELC--QG----IVKDASRELYLAVIERLAERGAEGVILGCT 197 (230)
T ss_pred HHHHHHCCceEecCCHHHHHHH-HHHHHHHHh--cc----cchHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 22222222 4444445555432 233332 21 11 1222222 22334556789999998655
No 340
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=20.10 E-value=2.8e+02 Score=25.28 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=68.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
...+..=.+.|+|.+.|..|. ....+-+. .+++.|.+.|.-+.-.++- +.+...+...|.|++
T Consensus 75 ~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~--------------~Ir~~g~k~GlalnP~T~~--~~i~~~l~~vD~Vlv 138 (223)
T PRK08745 75 DRIVPDFADAGATTISFHPEASRHVHRTIQ--------------LIKSHGCQAGLVLNPATPV--DILDWVLPELDLVLV 138 (223)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHH--------------HHHHCCCceeEEeCCCCCH--HHHHHHHhhcCEEEE
Confidence 445566677899999988762 11111111 2234466777665554432 333344456788777
Q ss_pred -----eCCCCeeec--hhhhh---hcccCCC-ceEEEEcCCHHHHHHHHHHHhcccCeEEE-----ecCCHH-HHHHHHH
Q 024251 139 -----DLPDWQVIP--AENIV---ASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVL-----KVEDVK-AVLALKE 201 (270)
Q Consensus 139 -----~~~DWtiIP--lENlI---A~~q~~~-~~i~a~v~~~~eA~~~l~~LE~G~DGVvl-----~~~d~~-~v~~l~~ 201 (270)
.|.+.+.|| +|.+- +.....+ ...+.+-.... .+.+-...+.|+|.+|. ..+|+. .++++++
T Consensus 139 MtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~ 217 (223)
T PRK08745 139 MSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRA 217 (223)
T ss_pred EEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 466888887 33332 2222212 12344333333 45666888999997764 445553 3455544
Q ss_pred h
Q 024251 202 Y 202 (270)
Q Consensus 202 ~ 202 (270)
.
T Consensus 218 ~ 218 (223)
T PRK08745 218 A 218 (223)
T ss_pred H
Confidence 3
No 341
>PRK10425 DNase TatD; Provisional
Probab=20.02 E-value=51 Score=30.35 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.5
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN 80 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~ 80 (270)
+..+++..|-+.|+..++...-+
T Consensus 16 d~~~vl~~a~~~gv~~~i~~~~~ 38 (258)
T PRK10425 16 DRDDVVARAFAAGVNGMLITGTN 38 (258)
T ss_pred cHHHHHHHHHHCCCCEEEEeCCC
Confidence 45788999999999998877544
Done!