Query 024251
Match_columns 270
No_of_seqs 129 out of 165
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:01:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qz6_A HPCH/HPAI aldolase; str 95.2 0.039 1.3E-06 49.2 6.9 93 108-204 14-111 (261)
2 3luf_A Two-component system re 93.9 0.31 1.1E-05 41.8 9.3 149 53-205 77-245 (259)
3 2v5j_A 2,4-dihydroxyhept-2-ENE 93.8 0.36 1.2E-05 43.6 10.1 93 107-203 36-133 (287)
4 3qja_A IGPS, indole-3-glycerol 93.6 0.4 1.4E-05 43.1 9.9 117 59-195 124-253 (272)
5 1dxe_A 2-dehydro-3-deoxy-galac 93.6 0.41 1.4E-05 42.1 9.8 89 110-204 20-114 (256)
6 2vws_A YFAU, 2-keto-3-deoxy su 93.0 0.37 1.3E-05 42.8 8.6 92 108-203 16-112 (267)
7 1dxe_A 2-dehydro-3-deoxy-galac 91.3 1.3 4.4E-05 38.9 9.9 37 158-194 144-181 (256)
8 1izc_A Macrophomate synthase i 90.6 0.59 2E-05 43.4 7.4 91 110-204 43-140 (339)
9 2v82_A 2-dehydro-3-deoxy-6-pho 90.6 0.58 2E-05 39.0 6.6 118 59-201 21-143 (212)
10 3q58_A N-acetylmannosamine-6-p 90.5 1.4 4.7E-05 38.4 9.3 107 60-190 91-211 (229)
11 3qz6_A HPCH/HPAI aldolase; str 90.3 0.19 6.5E-06 44.8 3.6 140 52-194 18-179 (261)
12 3q58_A N-acetylmannosamine-6-p 90.2 4 0.00014 35.5 11.9 112 60-188 39-155 (229)
13 3igs_A N-acetylmannosamine-6-p 88.5 5.7 0.00019 34.5 11.6 112 60-188 39-155 (232)
14 1sgj_A Citrate lyase, beta sub 88.3 1.6 5.6E-05 38.6 8.2 93 109-205 8-117 (284)
15 2v5j_A 2,4-dihydroxyhept-2-ENE 88.1 1.7 5.8E-05 39.2 8.2 36 159-194 166-202 (287)
16 1k68_A Phytochrome response re 87.5 4.4 0.00015 29.2 8.8 67 131-199 54-124 (140)
17 2vws_A YFAU, 2-keto-3-deoxy su 87.5 2.5 8.4E-05 37.5 8.8 127 52-194 21-181 (267)
18 3grc_A Sensor protein, kinase; 87.4 4.7 0.00016 29.5 9.1 82 116-199 35-120 (140)
19 3bo9_A Putative nitroalkan dio 87.4 3.3 0.00011 37.5 9.7 113 57-190 37-152 (326)
20 4e7p_A Response regulator; DNA 87.1 6.1 0.00021 29.6 9.7 81 116-199 51-133 (150)
21 3hdg_A Uncharacterized protein 86.9 2.5 8.5E-05 31.0 7.3 82 116-200 36-119 (137)
22 3paj_A Nicotinate-nucleotide p 86.8 0.96 3.3E-05 42.3 5.9 42 160-204 232-273 (320)
23 1e0t_A Pyruvate kinase, PK; ph 86.6 1.2 4.2E-05 43.4 6.8 37 157-194 212-248 (470)
24 3jte_A Response regulator rece 86.2 4.6 0.00016 29.7 8.5 82 116-199 32-116 (143)
25 3igs_A N-acetylmannosamine-6-p 85.5 3.5 0.00012 35.9 8.6 108 60-191 91-212 (232)
26 3o63_A Probable thiamine-phosp 85.5 8.3 0.00028 33.9 11.1 90 107-203 134-239 (243)
27 1wbh_A KHG/KDPG aldolase; lyas 85.5 3.1 0.0001 35.9 8.1 109 59-191 30-138 (214)
28 2qzj_A Two-component response 84.6 4.5 0.00015 30.0 7.7 81 116-199 33-114 (136)
29 3qtg_A Pyruvate kinase, PK; TI 84.6 0.83 2.8E-05 44.7 4.5 135 58-205 182-344 (461)
30 1wa3_A 2-keto-3-deoxy-6-phosph 84.5 2.2 7.7E-05 35.1 6.6 122 59-203 24-145 (205)
31 1vhc_A Putative KHG/KDPG aldol 84.3 2.6 8.8E-05 36.7 7.1 121 59-203 31-155 (224)
32 3tsm_A IGPS, indole-3-glycerol 84.1 7.4 0.00025 35.1 10.3 116 59-195 131-260 (272)
33 3lab_A Putative KDPG (2-keto-3 83.6 5.6 0.00019 35.1 9.1 119 58-203 26-157 (217)
34 2e28_A Pyruvate kinase, PK; al 83.3 1.1 3.8E-05 44.8 4.9 135 58-205 174-335 (587)
35 3mm4_A Histidine kinase homolo 83.0 3.9 0.00013 33.2 7.4 72 132-205 119-196 (206)
36 3f6c_A Positive transcription 82.8 4.4 0.00015 29.4 6.9 81 116-199 31-113 (134)
37 3vnd_A TSA, tryptophan synthas 82.7 1.5 5.1E-05 39.4 5.1 113 60-190 113-236 (267)
38 4drs_A Pyruvate kinase; glycol 82.6 1.9 6.4E-05 42.8 6.1 138 61-204 220-383 (526)
39 1sgj_A Citrate lyase, beta sub 82.5 2.1 7.1E-05 38.0 5.9 137 50-194 7-157 (284)
40 3t8y_A CHEB, chemotaxis respon 82.5 7 0.00024 30.1 8.3 74 117-192 57-132 (164)
41 3hqn_D Pyruvate kinase, PK; TI 82.5 0.77 2.6E-05 45.3 3.3 134 58-204 193-352 (499)
42 3kht_A Response regulator; PSI 82.2 8 0.00027 28.5 8.3 86 116-204 36-127 (144)
43 3tqv_A Nicotinate-nucleotide p 82.2 2.2 7.5E-05 39.3 6.1 42 159-203 198-239 (287)
44 3gr4_A Pyruvate kinase isozyme 82.1 1.3 4.4E-05 44.2 4.8 134 58-204 243-402 (550)
45 3q9s_A DNA-binding response re 82.0 5.1 0.00017 33.7 7.9 81 116-199 66-147 (249)
46 3usb_A Inosine-5'-monophosphat 82.0 4.5 0.00015 39.2 8.5 115 56-191 254-390 (511)
47 3c2e_A Nicotinate-nucleotide p 81.9 0.86 2.9E-05 41.5 3.3 69 160-234 200-276 (294)
48 4avf_A Inosine-5'-monophosphat 81.8 6.4 0.00022 37.8 9.5 114 57-191 228-363 (490)
49 4fxs_A Inosine-5'-monophosphat 81.8 3.7 0.00013 39.6 7.8 115 56-191 229-365 (496)
50 3l0g_A Nicotinate-nucleotide p 81.6 2.2 7.5E-05 39.6 5.9 43 159-204 207-249 (300)
51 1qop_A Tryptophan synthase alp 81.4 1.7 5.8E-05 38.2 4.9 113 60-190 112-235 (268)
52 2qvg_A Two component response 81.3 7.5 0.00026 28.4 7.8 67 131-199 58-128 (143)
53 3eqz_A Response regulator; str 81.2 13 0.00043 26.7 10.1 82 116-200 32-119 (135)
54 2qr3_A Two-component system re 80.9 9.9 0.00034 27.6 8.3 82 116-199 32-119 (140)
55 1p2f_A Response regulator; DRR 80.9 7.6 0.00026 31.1 8.3 79 116-199 30-110 (220)
56 1qkk_A DCTD, C4-dicarboxylate 80.7 12 0.00042 28.0 8.9 81 116-199 32-114 (155)
57 1xi3_A Thiamine phosphate pyro 80.7 6.6 0.00023 32.0 8.0 116 61-203 77-210 (215)
58 2gjl_A Hypothetical protein PA 80.6 4.6 0.00016 36.1 7.6 110 58-190 27-146 (328)
59 1ujp_A Tryptophan synthase alp 80.6 2.6 9E-05 37.7 5.9 114 60-191 109-231 (271)
60 1qap_A Quinolinic acid phospho 80.6 2.9 9.9E-05 38.2 6.3 41 161-204 210-250 (296)
61 3gt7_A Sensor protein; structu 80.5 8.6 0.00029 29.1 8.1 87 116-205 36-127 (154)
62 1o4u_A Type II quinolic acid p 80.5 3.1 0.00011 37.9 6.4 42 160-204 194-235 (285)
63 3o63_A Probable thiamine-phosp 80.3 3.4 0.00012 36.5 6.4 103 60-190 46-163 (243)
64 1a3w_A Pyruvate kinase; allost 80.0 2.1 7.3E-05 42.0 5.5 75 58-194 194-268 (500)
65 1kgs_A DRRD, DNA binding respo 80.0 8.1 0.00028 30.9 8.2 81 116-199 31-113 (225)
66 4e38_A Keto-hydroxyglutarate-a 79.7 5.8 0.0002 35.1 7.7 118 58-202 47-171 (232)
67 3lte_A Response regulator; str 79.7 12 0.0004 26.9 8.3 79 116-198 35-117 (132)
68 3kcn_A Adenylate cyclase homol 79.5 11 0.00037 28.2 8.3 82 116-199 32-116 (151)
69 3kto_A Response regulator rece 79.5 7.5 0.00026 28.6 7.3 82 116-199 35-119 (136)
70 3h1g_A Chemotaxis protein CHEY 79.5 9.1 0.00031 27.8 7.7 66 132-199 51-120 (129)
71 3cfy_A Putative LUXO repressor 79.3 14 0.00047 27.3 8.7 81 116-199 33-115 (137)
72 1dcf_A ETR1 protein; beta-alph 79.2 6.9 0.00024 28.6 7.0 38 161-199 85-122 (136)
73 1xi3_A Thiamine phosphate pyro 79.2 11 0.00036 30.8 8.7 103 59-190 28-136 (215)
74 3ilh_A Two component response 79.1 16 0.00055 26.5 9.0 67 131-199 59-132 (146)
75 1yad_A Regulatory protein TENI 79.0 15 0.0005 30.6 9.7 98 63-190 35-138 (221)
76 3hv2_A Response regulator/HD d 78.9 14 0.00047 27.7 8.7 81 116-199 43-126 (153)
77 2b7n_A Probable nicotinate-nuc 78.7 5.2 0.00018 35.8 7.2 42 160-204 183-224 (273)
78 3gnn_A Nicotinate-nucleotide p 78.6 2.2 7.7E-05 39.4 4.9 42 159-203 209-250 (298)
79 2ekc_A AQ_1548, tryptophan syn 78.5 1.8 6.3E-05 38.0 4.1 112 60-190 112-235 (262)
80 3hdv_A Response regulator; PSI 78.3 8.8 0.0003 27.9 7.3 65 133-199 53-120 (136)
81 3heb_A Response regulator rece 78.2 7.1 0.00024 29.2 6.9 67 131-199 58-128 (152)
82 2pl1_A Transcriptional regulat 78.1 12 0.00041 26.3 7.8 81 116-199 29-111 (121)
83 3ffs_A Inosine-5-monophosphate 77.7 8.3 0.00028 36.7 8.7 109 60-191 146-277 (400)
84 2gjl_A Hypothetical protein PA 77.6 11 0.00036 33.7 8.9 107 60-190 86-202 (328)
85 3nav_A Tryptophan synthase alp 77.6 2.9 9.9E-05 37.7 5.2 114 60-191 115-239 (271)
86 1vd6_A Glycerophosphoryl diest 77.5 13 0.00045 31.3 9.1 59 144-203 77-142 (224)
87 3khd_A Pyruvate kinase; malari 77.4 1.4 4.9E-05 43.7 3.4 134 58-204 217-377 (520)
88 1xhf_A DYE resistance, aerobic 77.3 10 0.00035 26.9 7.3 80 116-198 32-112 (123)
89 3hzh_A Chemotaxis response reg 77.3 6.8 0.00023 29.8 6.6 81 116-198 66-149 (157)
90 1zgz_A Torcad operon transcrip 77.2 14 0.00048 26.1 8.0 79 117-198 32-111 (122)
91 1yxy_A Putative N-acetylmannos 77.2 13 0.00043 31.2 8.8 112 60-186 39-157 (234)
92 1i3c_A Response regulator RCP1 76.8 14 0.00049 27.6 8.2 66 132-199 61-130 (149)
93 1k66_A Phytochrome response re 76.7 19 0.00065 26.1 9.0 67 131-199 61-131 (149)
94 2tps_A Protein (thiamin phosph 76.7 12 0.0004 31.0 8.4 40 160-203 173-220 (227)
95 2qxy_A Response regulator; reg 76.6 11 0.00037 27.6 7.4 80 116-199 33-114 (142)
96 2xz9_A Phosphoenolpyruvate-pro 76.6 7 0.00024 35.9 7.6 96 105-205 14-159 (324)
97 3gg8_A Pyruvate kinase; malari 76.5 1.2 4.2E-05 44.0 2.7 135 58-205 208-369 (511)
98 3f6p_A Transcriptional regulat 76.5 18 0.00063 25.9 9.4 79 117-198 32-111 (120)
99 3h5i_A Response regulator/sens 76.4 1.4 4.9E-05 32.7 2.5 82 117-199 35-117 (140)
100 2gkg_A Response regulator homo 76.3 7.7 0.00026 27.4 6.3 66 132-199 49-118 (127)
101 2zay_A Response regulator rece 76.0 16 0.00056 26.8 8.3 81 116-199 37-121 (147)
102 3qja_A IGPS, indole-3-glycerol 76.0 7.2 0.00024 34.9 7.3 112 60-192 75-192 (272)
103 3rqi_A Response regulator prot 75.9 6.6 0.00023 30.9 6.4 80 116-198 36-117 (184)
104 3fwz_A Inner membrane protein 75.9 11 0.00037 29.0 7.5 104 60-191 20-127 (140)
105 2rjn_A Response regulator rece 75.9 22 0.00075 26.5 9.9 81 116-199 36-119 (154)
106 4fo4_A Inosine 5'-monophosphat 75.7 10 0.00035 35.4 8.6 115 58-191 108-242 (366)
107 3eul_A Possible nitrate/nitrit 75.6 12 0.00041 27.9 7.5 66 132-199 61-128 (152)
108 3cnb_A DNA-binding response re 75.5 19 0.00064 26.0 8.4 80 117-199 40-123 (143)
109 3nhm_A Response regulator; pro 75.4 9.1 0.00031 27.6 6.6 84 116-203 32-120 (133)
110 1izc_A Macrophomate synthase i 75.0 6.4 0.00022 36.5 6.9 36 159-194 177-213 (339)
111 2jbm_A Nicotinate-nucleotide p 74.8 5.1 0.00018 36.4 6.2 42 160-204 198-239 (299)
112 3t05_A Pyruvate kinase, PK; te 74.7 1.6 5.4E-05 44.0 2.9 136 57-205 193-354 (606)
113 3cz5_A Two-component response 74.6 14 0.00047 27.6 7.6 81 116-199 36-118 (153)
114 4dad_A Putative pilus assembly 74.2 8 0.00027 28.6 6.1 67 131-199 66-134 (146)
115 3r0j_A Possible two component 74.2 13 0.00044 30.7 8.0 81 116-199 52-134 (250)
116 3llv_A Exopolyphosphatase-rela 74.0 12 0.00043 28.2 7.3 107 59-191 18-125 (141)
117 1w8s_A FBP aldolase, fructose- 73.9 8.6 0.00029 33.9 7.2 82 119-204 157-252 (263)
118 2yw3_A 4-hydroxy-2-oxoglutarat 73.3 18 0.00061 30.7 8.9 106 59-193 27-135 (207)
119 3i42_A Response regulator rece 73.1 11 0.00037 27.0 6.5 82 116-201 32-117 (127)
120 3bw2_A 2-nitropropane dioxygen 72.5 12 0.00041 34.1 8.0 107 60-190 112-238 (369)
121 1mxs_A KDPG aldolase; 2-keto-3 72.4 10 0.00035 32.9 7.2 108 59-190 40-147 (225)
122 1qo2_A Molecule: N-((5-phospho 72.0 20 0.00068 30.2 8.8 133 53-190 76-224 (241)
123 2z6i_A Trans-2-enoyl-ACP reduc 71.8 11 0.00037 34.0 7.5 107 60-190 78-192 (332)
124 2qsj_A DNA-binding response re 71.6 12 0.0004 27.9 6.6 82 116-199 34-117 (154)
125 2w6r_A Imidazole glycerol phos 71.6 9 0.00031 32.6 6.6 114 59-190 32-177 (266)
126 3cg0_A Response regulator rece 71.5 9.6 0.00033 27.6 5.9 67 132-199 54-121 (140)
127 2v82_A 2-dehydro-3-deoxy-6-pho 71.4 9.4 0.00032 31.5 6.5 105 59-190 69-177 (212)
128 3khj_A Inosine-5-monophosphate 71.2 11 0.00037 35.0 7.5 109 60-191 107-238 (361)
129 1dbw_A Transcriptional regulat 70.9 26 0.00088 25.0 8.2 80 117-199 33-114 (126)
130 3tsm_A IGPS, indole-3-glycerol 70.9 19 0.00063 32.5 8.8 113 59-192 81-199 (272)
131 1a04_A Nitrate/nitrite respons 70.8 28 0.00095 27.6 9.0 81 116-199 36-118 (215)
132 2fli_A Ribulose-phosphate 3-ep 70.8 12 0.00041 30.8 7.1 18 61-78 75-92 (220)
133 1rd5_A Tryptophan synthase alp 70.7 3.5 0.00012 35.6 3.9 109 64-190 112-231 (262)
134 1srr_A SPO0F, sporulation resp 70.1 23 0.00078 25.2 7.6 81 116-199 32-114 (124)
135 3eod_A Protein HNR; response r 69.8 13 0.00045 26.7 6.3 66 132-199 51-119 (130)
136 2w6r_A Imidazole glycerol phos 69.5 29 0.00098 29.4 9.3 69 132-203 169-246 (266)
137 1h1y_A D-ribulose-5-phosphate 69.0 7.5 0.00026 32.9 5.5 123 59-204 76-222 (228)
138 3snk_A Response regulator CHEY 68.9 9.5 0.00033 27.9 5.4 65 132-198 59-125 (135)
139 1qpo_A Quinolinate acid phosph 68.3 6.6 0.00023 35.7 5.3 41 161-204 196-236 (284)
140 2tps_A Protein (thiamin phosph 68.2 17 0.00058 29.9 7.4 49 132-188 94-142 (227)
141 1geq_A Tryptophan synthase alp 68.1 6 0.00021 33.4 4.7 113 60-191 98-222 (248)
142 2oqr_A Sensory transduction pr 67.7 18 0.00062 29.0 7.3 81 116-199 33-114 (230)
143 2jba_A Phosphate regulon trans 67.5 17 0.00058 25.8 6.5 80 116-198 31-114 (127)
144 2y88_A Phosphoribosyl isomeras 67.4 21 0.00071 29.8 7.9 28 52-79 76-105 (244)
145 1thf_D HISF protein; thermophI 67.3 50 0.0017 27.6 10.3 28 52-79 76-105 (253)
146 1p6q_A CHEY2; chemotaxis, sign 67.0 22 0.00074 25.4 7.0 66 132-199 51-120 (129)
147 3gl9_A Response regulator; bet 66.9 33 0.0011 24.7 8.2 66 131-198 45-114 (122)
148 3qvq_A Phosphodiesterase OLEI0 66.8 7.1 0.00024 33.6 5.0 32 48-79 208-240 (252)
149 3mz2_A Glycerophosphoryl diest 66.7 8.9 0.00031 34.3 5.8 50 149-200 218-275 (292)
150 1vzw_A Phosphoribosyl isomeras 66.3 23 0.00078 29.7 8.0 29 51-79 76-106 (244)
151 1tqj_A Ribulose-phosphate 3-ep 66.3 4.8 0.00016 34.7 3.8 124 60-203 75-221 (230)
152 1y0e_A Putative N-acetylmannos 66.2 28 0.00095 28.7 8.4 114 60-189 26-146 (223)
153 2gwr_A DNA-binding response re 66.2 9.5 0.00032 31.2 5.4 82 116-200 34-116 (238)
154 1vzw_A Phosphoribosyl isomeras 66.1 8.1 0.00028 32.5 5.1 115 57-192 32-169 (244)
155 3b2n_A Uncharacterized protein 66.0 31 0.001 25.1 7.7 66 132-199 49-116 (133)
156 3cwo_X Beta/alpha-barrel prote 65.1 9 0.00031 30.7 5.0 20 59-78 64-83 (237)
157 3no3_A Glycerophosphodiester p 64.7 8.2 0.00028 33.1 4.9 31 48-78 194-225 (238)
158 3tha_A Tryptophan synthase alp 64.4 7.6 0.00026 34.8 4.8 116 59-191 105-229 (252)
159 1x1o_A Nicotinate-nucleotide p 64.2 16 0.00053 33.2 6.9 53 147-203 185-237 (286)
160 3ks6_A Glycerophosphoryl diest 63.8 8.6 0.0003 33.1 4.9 32 48-79 202-234 (250)
161 1tmy_A CHEY protein, TMY; chem 63.8 24 0.0008 24.8 6.6 80 116-198 32-113 (120)
162 3lua_A Response regulator rece 63.2 16 0.00054 26.7 5.7 83 116-199 34-120 (140)
163 1eep_A Inosine 5'-monophosphat 62.9 45 0.0015 30.7 9.9 111 58-190 153-286 (404)
164 3crn_A Response regulator rece 62.7 27 0.00091 25.4 6.9 80 116-198 32-113 (132)
165 3m6m_D Sensory/regulatory prot 62.7 44 0.0015 24.7 8.9 80 117-199 44-129 (143)
166 2z6i_A Trans-2-enoyl-ACP reduc 62.7 20 0.0007 32.1 7.4 111 59-190 25-138 (332)
167 1vrd_A Inosine-5'-monophosphat 62.6 31 0.001 32.5 8.9 111 58-190 237-370 (494)
168 3cg4_A Response regulator rece 62.2 9.1 0.00031 27.9 4.2 81 116-199 36-120 (142)
169 3ffs_A Inosine-5-monophosphate 61.4 15 0.0005 34.9 6.4 74 111-189 137-212 (400)
170 3ks6_A Glycerophosphoryl diest 61.2 6.3 0.00022 34.0 3.6 60 133-201 182-242 (250)
171 1yio_A Response regulatory pro 61.1 16 0.00055 28.8 5.7 80 116-198 33-114 (208)
172 1zh2_A KDP operon transcriptio 60.3 8.7 0.0003 27.0 3.7 65 132-198 45-110 (121)
173 1u5h_A CITE; TIM barrel, struc 59.1 18 0.00061 32.0 6.2 83 112-199 10-102 (273)
174 3inp_A D-ribulose-phosphate 3- 59.1 11 0.00039 33.4 4.9 126 60-203 99-243 (246)
175 2a9o_A Response regulator; ess 59.0 10 0.00036 26.6 3.9 65 132-198 45-110 (120)
176 1xx1_A Smase I, sphingomyelina 58.8 18 0.00062 31.2 6.1 46 149-199 212-260 (285)
177 1xx1_A Smase I, sphingomyelina 58.6 11 0.00037 32.6 4.7 31 49-79 223-254 (285)
178 3bo9_A Putative nitroalkan dio 58.5 25 0.00087 31.6 7.2 108 59-190 91-206 (326)
179 3qll_A Citrate lyase; beta bar 58.2 32 0.0011 31.3 7.9 132 50-194 44-194 (316)
180 2aam_A Hypothetical protein TM 57.9 23 0.00079 32.4 6.9 112 53-193 22-146 (309)
181 3ovp_A Ribulose-phosphate 3-ep 57.9 24 0.00083 30.4 6.8 125 60-204 77-218 (228)
182 1vd6_A Glycerophosphoryl diest 57.7 14 0.00048 31.1 5.1 36 48-85 184-220 (224)
183 1ys7_A Transcriptional regulat 57.6 9.8 0.00034 30.5 3.9 81 116-199 36-118 (233)
184 1h1y_A D-ribulose-5-phosphate 57.4 49 0.0017 27.8 8.5 113 58-190 20-146 (228)
185 1zfj_A Inosine monophosphate d 57.1 22 0.00074 33.4 6.8 113 58-191 233-367 (491)
186 3f4w_A Putative hexulose 6 pho 56.8 40 0.0014 27.4 7.7 72 131-203 76-157 (211)
187 1vc4_A Indole-3-glycerol phosp 56.8 19 0.00065 31.6 6.0 115 59-194 117-246 (254)
188 3cu5_A Two component transcrip 56.7 17 0.00059 26.9 5.0 80 116-198 34-115 (141)
189 3qqw_A Putative citrate lyase; 56.7 25 0.00084 32.2 6.9 31 50-80 22-57 (332)
190 1vc4_A Indole-3-glycerol phosp 55.3 24 0.00082 31.0 6.4 112 59-192 67-184 (254)
191 1jbe_A Chemotaxis protein CHEY 55.1 53 0.0018 23.2 8.1 65 132-198 49-117 (128)
192 3n53_A Response regulator rece 55.1 17 0.0006 26.5 4.7 80 117-199 32-115 (140)
193 2qjg_A Putative aldolase MJ040 54.8 88 0.003 26.6 9.8 36 167-202 163-200 (273)
194 3l12_A Putative glycerophospho 54.6 12 0.00043 33.1 4.5 32 48-79 266-298 (313)
195 3qvq_A Phosphodiesterase OLEI0 54.2 10 0.00035 32.6 3.7 50 143-198 195-245 (252)
196 2otd_A Glycerophosphodiester p 53.8 15 0.0005 31.3 4.6 32 48-79 205-237 (247)
197 2qv0_A Protein MRKE; structura 53.6 61 0.0021 23.5 9.1 64 132-199 55-120 (143)
198 2nv1_A Pyridoxal biosynthesis 52.9 1.2E+02 0.0041 26.7 11.7 111 53-188 24-151 (305)
199 1dz3_A Stage 0 sporulation pro 52.6 26 0.0009 25.1 5.3 80 116-198 33-115 (130)
200 3cu2_A Ribulose-5-phosphate 3- 52.4 19 0.00066 31.5 5.3 127 58-201 80-234 (237)
201 1zcc_A Glycerophosphodiester p 52.3 14 0.00049 31.6 4.3 31 48-78 192-224 (248)
202 1y0e_A Putative N-acetylmannos 52.3 46 0.0016 27.3 7.3 110 59-191 77-206 (223)
203 3no3_A Glycerophosphodiester p 52.1 11 0.00037 32.3 3.5 45 149-198 186-231 (238)
204 1id1_A Putative potassium chan 52.0 32 0.0011 26.5 5.9 104 60-187 16-123 (153)
205 3l9w_A Glutathione-regulated p 51.4 22 0.00075 33.3 5.8 102 60-189 17-122 (413)
206 1jcn_A Inosine monophosphate d 51.4 45 0.0015 31.7 8.0 112 59-191 256-389 (514)
207 2g1u_A Hypothetical protein TM 51.3 42 0.0014 26.0 6.6 106 60-192 32-139 (155)
208 3r2g_A Inosine 5'-monophosphat 50.7 1E+02 0.0035 28.8 10.2 113 58-191 100-230 (361)
209 1s8n_A Putative antiterminator 50.1 65 0.0022 25.3 7.6 66 132-199 58-124 (205)
210 3qll_A Citrate lyase; beta bar 50.0 81 0.0028 28.6 9.2 90 113-205 49-153 (316)
211 2y88_A Phosphoribosyl isomeras 48.9 18 0.00061 30.2 4.3 105 92-202 5-119 (244)
212 3ceu_A Thiamine phosphate pyro 48.8 20 0.00067 30.0 4.5 97 60-190 16-115 (210)
213 2r25_B Osmosensing histidine p 48.5 19 0.00065 26.4 4.0 66 132-199 52-120 (133)
214 3rlg_A Sphingomyelin phosphodi 48.4 19 0.00065 33.5 4.7 30 50-79 241-271 (302)
215 3c85_A Putative glutathione-re 48.4 68 0.0023 25.2 7.5 109 59-191 51-161 (183)
216 2pz0_A Glycerophosphoryl diest 47.8 13 0.00044 31.9 3.3 31 48-78 209-240 (252)
217 3a10_A Response regulator; pho 47.8 67 0.0023 22.2 6.9 64 131-198 44-109 (116)
218 1rpx_A Protein (ribulose-phosp 47.4 35 0.0012 28.4 5.9 20 60-79 81-100 (230)
219 1ka9_F Imidazole glycerol phos 46.9 19 0.00066 30.2 4.2 126 59-202 33-194 (252)
220 1zcc_A Glycerophosphodiester p 46.9 18 0.00061 31.0 4.1 62 133-201 171-233 (248)
221 2pln_A HP1043, response regula 46.5 22 0.00075 25.8 4.0 40 159-199 86-126 (137)
222 1qo2_A Molecule: N-((5-phospho 45.2 33 0.0011 28.8 5.5 107 58-192 31-167 (241)
223 1thf_D HISF protein; thermophI 44.6 15 0.00051 30.9 3.2 115 59-191 32-173 (253)
224 1vhc_A Putative KHG/KDPG aldol 44.5 7.9 0.00027 33.6 1.4 33 166-201 76-108 (224)
225 3cwo_X Beta/alpha-barrel prote 43.9 60 0.002 25.7 6.6 70 132-203 25-99 (237)
226 2oog_A Glycerophosphoryl diest 43.9 16 0.00054 32.0 3.3 31 48-78 239-270 (287)
227 3ch0_A Glycerophosphodiester p 43.8 16 0.00055 31.4 3.3 31 48-78 234-265 (272)
228 2j48_A Two-component sensor ki 43.7 22 0.00077 24.3 3.5 76 117-198 31-110 (119)
229 3r4i_A Citrate lyase; TIM beta 43.3 81 0.0028 28.9 8.1 28 53-80 24-56 (339)
230 3ctl_A D-allulose-6-phosphate 43.2 34 0.0012 29.7 5.3 128 60-204 70-218 (231)
231 3t6k_A Response regulator rece 42.6 27 0.00091 25.7 4.0 71 131-203 47-122 (136)
232 3bw2_A 2-nitropropane dioxygen 42.0 37 0.0013 30.8 5.6 52 131-189 121-172 (369)
233 3l12_A Putative glycerophospho 41.9 17 0.00058 32.2 3.3 50 143-198 253-303 (313)
234 1mvo_A PHOP response regulator 41.8 25 0.00086 25.3 3.7 66 132-199 47-114 (136)
235 1mb3_A Cell division response 41.8 26 0.00089 24.7 3.7 66 132-199 45-114 (124)
236 2zbt_A Pyridoxal biosynthesis 41.0 1.8E+02 0.0061 25.2 13.9 112 53-189 24-152 (297)
237 3eoo_A Methylisocitrate lyase; 40.6 1.5E+02 0.0051 27.0 9.4 73 131-203 110-206 (298)
238 1qo0_D AMIR; binding protein, 40.4 26 0.00088 27.5 3.8 64 132-198 52-117 (196)
239 2h6r_A Triosephosphate isomera 40.2 69 0.0024 27.2 6.7 112 63-195 75-210 (219)
240 4a29_A Engineered retro-aldol 39.9 2.1E+02 0.0073 25.8 10.7 111 59-190 115-234 (258)
241 1to3_A Putative aldolase YIHT; 39.6 97 0.0033 27.9 7.9 15 61-75 112-126 (304)
242 4adx_I AIF6; ribosome, protein 39.5 29 0.001 30.6 4.4 92 144-248 95-207 (222)
243 3l4b_C TRKA K+ channel protien 39.2 44 0.0015 27.3 5.2 105 60-191 13-121 (218)
244 3r2g_A Inosine 5'-monophosphat 39.1 29 0.00099 32.5 4.5 109 58-189 54-169 (361)
245 4f3j_A Complement C1Q tumor ne 38.8 70 0.0024 25.4 6.2 39 216-254 88-143 (148)
246 4avf_A Inosine-5'-monophosphat 38.6 66 0.0023 30.8 7.0 65 121-188 229-297 (490)
247 1nsj_A PRAI, phosphoribosyl an 38.2 1.8E+02 0.0063 24.6 12.6 86 108-202 97-201 (205)
248 3klo_A Transcriptional regulat 38.2 46 0.0016 26.8 5.1 67 131-199 53-122 (225)
249 3khj_A Inosine-5-monophosphate 37.1 51 0.0017 30.5 5.8 55 131-188 116-172 (361)
250 2oog_A Glycerophosphoryl diest 36.9 26 0.00088 30.6 3.6 45 149-198 231-276 (287)
251 3usb_A Inosine-5'-monophosphat 36.9 49 0.0017 31.9 5.8 55 131-188 267-324 (511)
252 3nk6_A 23S rRNA methyltransfer 36.8 86 0.003 27.9 7.1 119 51-190 31-152 (277)
253 1wbh_A KHG/KDPG aldolase; lyas 36.8 12 0.00042 32.1 1.4 80 114-197 21-103 (214)
254 1a3w_A Pyruvate kinase; allost 36.6 35 0.0012 33.5 4.8 37 169-205 193-230 (500)
255 3e61_A Putative transcriptiona 35.9 66 0.0023 26.2 5.7 28 173-200 55-83 (277)
256 2wqd_A Phosphoenolpyruvate-pro 35.9 75 0.0026 31.5 7.1 96 106-206 266-411 (572)
257 3c3w_A Two component transcrip 35.5 19 0.00065 29.3 2.3 81 116-199 32-114 (225)
258 1gz0_A Hypothetical tRNA/RRNA 35.4 1.4E+02 0.0049 25.9 8.2 124 48-191 8-139 (253)
259 2e28_A Pyruvate kinase, PK; al 34.9 37 0.0013 33.9 4.7 37 169-205 173-210 (587)
260 2o55_A Putative glycerophospho 34.4 50 0.0017 28.1 4.9 31 48-78 210-245 (258)
261 3kyj_B CHEY6 protein, putative 34.1 44 0.0015 24.5 4.0 64 132-196 60-125 (145)
262 2yw3_A 4-hydroxy-2-oxoglutarat 33.6 24 0.00081 29.9 2.7 65 131-201 37-102 (207)
263 1rpx_A Protein (ribulose-phosp 33.4 1.9E+02 0.0066 23.8 8.3 109 58-189 24-147 (230)
264 3c97_A Signal transduction his 33.1 66 0.0023 23.3 4.8 77 117-199 40-123 (140)
265 2hqr_A Putative transcriptiona 32.8 32 0.0011 27.4 3.3 40 159-199 68-108 (223)
266 4dbe_A Orotidine 5'-phosphate 32.7 42 0.0014 29.0 4.2 32 172-203 125-156 (222)
267 2hwg_A Phosphoenolpyruvate-pro 32.7 63 0.0022 32.1 5.9 96 106-206 264-409 (575)
268 2c6q_A GMP reductase 2; TIM ba 32.5 1.7E+02 0.0058 26.7 8.5 70 116-191 168-254 (351)
269 2jvf_A De novo protein M7; tet 32.1 65 0.0022 24.8 4.7 56 106-179 14-69 (96)
270 2aef_A Calcium-gated potassium 31.9 62 0.0021 26.6 5.0 62 118-188 59-124 (234)
271 1e0t_A Pyruvate kinase, PK; ph 31.7 49 0.0017 32.2 4.9 37 169-205 172-209 (470)
272 3dzd_A Transcriptional regulat 31.6 82 0.0028 28.6 6.1 84 116-203 29-116 (368)
273 1ny5_A Transcriptional regulat 30.6 1.2E+02 0.0041 27.6 7.1 81 116-199 29-111 (387)
274 1wv2_A Thiazole moeity, thiazo 30.5 1.7E+02 0.0057 26.7 7.9 46 142-195 175-227 (265)
275 1hxv_A Trigger factor; FKBP fo 29.4 20 0.0007 27.7 1.5 52 210-263 12-65 (113)
276 1i4n_A Indole-3-glycerol phosp 29.2 93 0.0032 27.6 5.9 71 118-193 111-182 (251)
277 1a2o_A CHEB methylesterase; ba 29.1 2.2E+02 0.0075 25.6 8.5 61 132-193 49-111 (349)
278 1pii_A N-(5'phosphoribosyl)ant 29.1 1.3E+02 0.0045 28.9 7.4 116 53-192 62-187 (452)
279 3rlg_A Sphingomyelin phosphodi 28.9 46 0.0016 30.9 3.9 54 141-199 217-277 (302)
280 3nl6_A Thiamine biosynthetic b 28.8 98 0.0034 30.3 6.5 101 60-188 28-137 (540)
281 2o55_A Putative glycerophospho 28.8 69 0.0024 27.2 4.9 57 133-198 190-251 (258)
282 1lnq_A MTHK channels, potassiu 28.1 70 0.0024 28.0 4.9 64 117-189 164-231 (336)
283 3tn4_A Phosphotriesterase; lac 27.5 24 0.00082 32.8 1.8 100 133-260 206-319 (360)
284 2jk1_A HUPR, hydrogenase trans 27.3 1.5E+02 0.0051 21.3 5.9 66 132-199 44-112 (139)
285 4ej6_A Putative zinc-binding d 27.2 2.4E+02 0.0083 25.0 8.4 129 49-184 182-328 (370)
286 4fxs_A Inosine-5'-monophosphat 27.0 97 0.0033 29.7 6.0 56 131-189 242-300 (496)
287 1mxs_A KDPG aldolase; 2-keto-3 26.9 18 0.00061 31.4 0.8 29 165-196 84-112 (225)
288 3bdk_A D-mannonate dehydratase 26.8 1.1E+02 0.0037 28.7 6.2 30 48-77 19-51 (386)
289 2vyc_A Biodegradative arginine 26.6 47 0.0016 33.4 3.9 84 116-203 37-131 (755)
290 1o1z_A GDPD, glycerophosphodie 26.0 81 0.0028 26.7 4.8 36 49-87 197-233 (234)
291 1u5h_A CITE; TIM barrel, struc 25.8 2.1E+02 0.0071 25.1 7.6 120 52-194 8-140 (273)
292 4e38_A Keto-hydroxyglutarate-a 25.7 26 0.0009 30.9 1.7 33 166-201 93-125 (232)
293 8abp_A L-arabinose-binding pro 25.7 73 0.0025 26.3 4.4 31 167-197 41-72 (306)
294 3gk0_A PNP synthase, pyridoxin 25.6 87 0.003 28.9 5.1 38 167-204 51-94 (278)
295 3qtg_A Pyruvate kinase, PK; TI 25.3 41 0.0014 32.8 3.1 74 119-194 180-258 (461)
296 3ve9_A Orotidine-5'-phosphate 24.8 59 0.002 28.0 3.7 31 173-203 119-149 (215)
297 3lye_A Oxaloacetate acetyl hyd 24.4 3.8E+02 0.013 24.5 9.2 74 131-204 115-214 (307)
298 3tdn_A FLR symmetric alpha-bet 24.3 41 0.0014 28.4 2.6 36 165-203 87-125 (247)
299 3to5_A CHEY homolog; alpha(5)b 24.1 1.7E+02 0.006 22.7 6.1 25 174-198 101-125 (134)
300 1ydn_A Hydroxymethylglutaryl-C 24.0 3.5E+02 0.012 23.4 10.2 127 58-204 27-194 (295)
301 2hjp_A Phosphonopyruvate hydro 23.8 1.6E+02 0.0054 26.6 6.5 74 131-204 102-203 (290)
302 3l49_A ABC sugar (ribose) tran 23.6 1E+02 0.0035 25.2 4.8 28 171-198 50-77 (291)
303 1ypf_A GMP reductase; GUAC, pu 23.5 70 0.0024 28.8 4.1 67 119-188 104-176 (336)
304 4djd_C C/Fe-SP, corrinoid/iron 23.2 1.9E+02 0.0064 28.2 7.2 74 116-192 161-235 (446)
305 1geq_A Tryptophan synthase alp 23.2 2.8E+02 0.0095 23.0 7.6 72 133-204 32-130 (248)
306 1ypf_A GMP reductase; GUAC, pu 23.0 3E+02 0.01 24.6 8.2 70 116-191 156-241 (336)
307 3mz2_A Glycerophosphoryl diest 22.6 91 0.0031 27.6 4.6 32 48-79 226-268 (292)
308 1viz_A PCRB protein homolog; s 22.6 74 0.0025 28.0 4.0 60 134-199 157-224 (240)
309 3tb6_A Arabinose metabolism tr 22.5 1.9E+02 0.0063 23.5 6.2 21 172-192 61-81 (298)
310 2f7f_A Nicotinate phosphoribos 22.3 1E+02 0.0034 30.0 5.2 43 162-204 228-280 (494)
311 3glc_A Aldolase LSRF; TIM barr 22.3 4.3E+02 0.015 23.8 9.6 67 132-204 202-278 (295)
312 2czd_A Orotidine 5'-phosphate 22.2 65 0.0022 26.7 3.4 30 174-203 124-153 (208)
313 1tqj_A Ribulose-phosphate 3-ep 22.1 1.2E+02 0.004 25.9 5.0 113 58-191 18-143 (230)
314 3eq2_A Probable two-component 21.5 2.6E+02 0.0089 24.6 7.4 65 131-197 48-115 (394)
315 3bre_A Probable two-component 21.4 1.7E+02 0.0059 25.0 6.0 65 132-198 63-131 (358)
316 3m47_A Orotidine 5'-phosphate 21.1 87 0.003 26.9 4.0 31 173-203 141-171 (228)
317 3gg8_A Pyruvate kinase; malari 21.0 73 0.0025 31.5 3.9 61 132-194 221-283 (511)
318 3d02_A Putative LACI-type tran 21.0 1.3E+02 0.0045 24.7 5.0 29 168-196 46-75 (303)
319 3i10_A Putative glycerophospho 20.9 69 0.0024 28.4 3.5 54 147-207 206-275 (278)
320 3oyz_A Malate synthase; TIM ba 20.8 1.3E+02 0.0043 29.3 5.5 74 132-205 42-139 (433)
321 3kke_A LACI family transcripti 20.8 1.2E+02 0.0042 25.2 4.9 24 171-194 60-83 (303)
322 1jcn_A Inosine monophosphate d 20.6 1.1E+02 0.0037 29.0 4.9 54 131-188 266-323 (514)
323 2xz9_A Phosphoenolpyruvate-pro 20.4 1.4E+02 0.0047 27.3 5.4 129 62-198 127-286 (324)
324 4gx0_A TRKA domain protein; me 20.3 1.4E+02 0.0048 28.2 5.6 109 56-189 135-244 (565)
No 1
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=95.20 E-value=0.039 Score=49.25 Aligned_cols=93 Identities=13% Similarity=0.216 Sum_probs=70.3
Q ss_pred CCeEEEEEEe-cChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcc---cCCCceEEEEcCCHHHHHHHHHHHhccc
Q 024251 108 DRRVGSIIEV-STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASF---QGSGKTVFAISKTPSEAQIFLEALEQGL 183 (270)
Q Consensus 108 gk~v~~~v~V-~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~---q~~~~~i~a~v~~~~eA~~~l~~LE~G~ 183 (270)
...+|.++.+ .+++-++.+... ..|+|++|..| .+.|.+.+.+.+ +..+..++..++..+. .....+|+.|+
T Consensus 14 ~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEh-av~~~~k~~~~l~a~~~~~~~~~VRVn~~~~-~di~~~ld~G~ 89 (261)
T 3qz6_A 14 KSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEH-AAYTFREINHLVSVAKNAGVSVLVRIPQVDR-AHVQRLLDIGA 89 (261)
T ss_dssp CCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSS-SCCCHHHHHHHHHHHHHHTCEEEEECSSCCH-HHHHHHHHHTC
T ss_pred CCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccC-CCCCHHHHHHHHHHHhhcCCeEEEEeCCCCH-HHHHHHHhcCC
Confidence 3567888888 888887777653 58999998887 466666555444 3345689999988755 46677889999
Q ss_pred CeEEEe-cCCHHHHHHHHHhhc
Q 024251 184 GGIVLK-VEDVKAVLALKEYFD 204 (270)
Q Consensus 184 DGVvl~-~~d~~~v~~l~~~~~ 204 (270)
|||+++ .+++++++++.+.+.
T Consensus 90 ~gI~lP~v~saed~~~~~~~~~ 111 (261)
T 3qz6_A 90 EGFMIPGVQSAETMRETVRLAK 111 (261)
T ss_dssp CEEEETTCCSHHHHHHHHHHHS
T ss_pred CEEEECCcCCHHHHHHHHHHhc
Confidence 999997 578999999888763
No 2
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=93.86 E-value=0.31 Score=41.76 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=78.9
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcCcchhhhhhccce------eeeeeeeecCCc--------cccCCCCeEEEEEE
Q 024251 53 VWIWT--ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTI------ALLDPLFIKEGE--------VYDSGDRRVGSIIE 116 (270)
Q Consensus 53 vWiw~--~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i------~~i~~l~~~~g~--------~~~~~gk~v~~~v~ 116 (270)
+.+-+ .+.+....|++.|++.++..+...........+ ..++.++++|.. .+...|..+. .
T Consensus 77 vi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~~~~~~~~~~~~~~~~~~~ILivDD~~~~~~~l~~~L~~~~~~v~---~ 153 (259)
T 3luf_A 77 VVILTADISEDKREAWLEAGVLDYVMKDSRHSLQYAVGLVHRLYLNQQIEVLVVDDSRTSRHRTMAQLRKQLLQVH---E 153 (259)
T ss_dssp EEEEECC-CHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHTTTCEEE---E
T ss_pred EEEEEccCCHHHHHHHHHCCCcEEEeCCchhHHHHHHHhhhhHhhcCCCcEEEEeCCHHHHHHHHHHHHHcCcEEE---E
Confidence 44444 367888899999999999887432221111111 123446666662 2355565432 4
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechh---hhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAE---NIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlE---NlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
..+.++.-.........+.++++..-+..=-+| .|-.........|+....+. +......+++.|++|.+.+|-++
T Consensus 154 a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~-~~~~~~~a~~~Ga~~yl~KP~~~ 232 (259)
T 3luf_A 154 ASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSD-KRGLSARYLKQGANDFLNQPFEP 232 (259)
T ss_dssp ESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSS-SSSHHHHHHHTTCSEEEESSCCH
T ss_pred eCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccC-CHHHHHHHHhcChhheEcCCCCH
Confidence 456554322222211246677754432211122 22222122234565444332 33445678999999999999999
Q ss_pred HHHHH-HHHhhcc
Q 024251 194 KAVLA-LKEYFDG 205 (270)
Q Consensus 194 ~~v~~-l~~~~~~ 205 (270)
+++.+ ++..+++
T Consensus 233 ~~L~~~i~~~l~~ 245 (259)
T 3luf_A 233 EELQCRVSHNLEA 245 (259)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 88653 3444433
No 3
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=93.84 E-value=0.36 Score=43.65 Aligned_cols=93 Identities=9% Similarity=0.083 Sum_probs=67.2
Q ss_pred CCC-eEEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhh---hhcccCCCceEEEEcCCHHHHHHHHHHHhcc
Q 024251 107 GDR-RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENI---VASFQGSGKTVFAISKTPSEAQIFLEALEQG 182 (270)
Q Consensus 107 ~gk-~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENl---IA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G 182 (270)
+|+ .++.++.+.+++.++.+.. ...|+++++..|-- .=.|.+ +.+++..+..++..++..+.. .+..+|+.|
T Consensus 36 ~G~~~~gl~~~~~~p~~~e~a~~--~GaD~v~lDlEh~~-~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~-di~~~ld~g 111 (287)
T 2v5j_A 36 AGRPQIGLWLGLSSSYSAELLAG--AGFDWLLIDGEHAP-NNVQTVLTQLQAIAPYPSQPVVRPSWNDPV-QIKQLLDVG 111 (287)
T ss_dssp TTCCEEEEEECSCCHHHHHHHHT--SCCSEEEEESSSSS-CCHHHHHHHHHHHTTSSSEEEEECSSSCHH-HHHHHHHTT
T ss_pred CCCcEEEEEEECCCHHHHHHHHh--CCCCEEEEeCCCcc-chHHHHHHHHHHHHhcCCCEEEEECCCCHH-HHHHHHhCC
Confidence 455 7899999999999887765 35899999988762 223333 334444456788888866543 456778899
Q ss_pred cCeEEEec-CCHHHHHHHHHhh
Q 024251 183 LGGIVLKV-EDVKAVLALKEYF 203 (270)
Q Consensus 183 ~DGVvl~~-~d~~~v~~l~~~~ 203 (270)
++||+++= ++++|++++.+.+
T Consensus 112 a~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 112 TQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp CCEEEESCCCSHHHHHHHHHHT
T ss_pred CCEEEeCCCCCHHHHHHHHHHh
Confidence 99999953 4789988887765
No 4
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=93.63 E-value=0.4 Score=43.13 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=69.7
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~--~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
+...+..|++.|+|++++...+ .+..+++-... ..-|.. ..+++.+.++++.+... ..+++
T Consensus 124 d~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a-------------~~lGl~--~lvev~t~ee~~~A~~~--Gad~I 186 (272)
T 3qja_A 124 QPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRT-------------ESLGMT--ALVEVHTEQEADRALKA--GAKVI 186 (272)
T ss_dssp SHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHH-------------HHTTCE--EEEEESSHHHHHHHHHH--TCSEE
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHH-------------HHCCCc--EEEEcCCHHHHHHHHHC--CCCEE
Confidence 4556899999999999873210 11122211110 011332 45788999988776543 58999
Q ss_pred EEeCCCCee--echhhhhhcccCC--CceEEEE--cCCHHHHHHHHHHHhcccCeEEEec-----CCHHH
Q 024251 137 VIDLPDWQV--IPAENIVASFQGS--GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV-----EDVKA 195 (270)
Q Consensus 137 vv~~~DWti--IPlENlIA~~q~~--~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~~~ 195 (270)
-++.+|-+. +.++.+..-.+.. +..++++ ++++++++.+ ++.|+|||++-. +||.+
T Consensus 187 Gv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l---~~~GadgvlVGsal~~a~dp~~ 253 (272)
T 3qja_A 187 GVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAY---AGAGADAVLVGEGLVTSGDPRA 253 (272)
T ss_dssp EEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHH---HHTTCSEEEECHHHHTCSCHHH
T ss_pred EECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHH---HHcCCCEEEEcHHHhCCCCHHH
Confidence 998765332 3445443222222 3456665 5678887754 678999999854 67754
No 5
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=93.58 E-value=0.41 Score=42.06 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=66.2
Q ss_pred eEEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechh-----hhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccC
Q 024251 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAE-----NIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (270)
Q Consensus 110 ~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlE-----NlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~D 184 (270)
.++.+..+.+++.++.+.. ...|+++++..|- |.| ..+.+++..+..++..++..+..- ...+|+.|++
T Consensus 20 ~~~~~l~v~~p~~~e~a~~--~gaD~v~lDlEd~---p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~-i~~~l~~g~~ 93 (256)
T 1dxe_A 20 QIGCWSALSNPISTEVLGL--AGFDWLVLDGEHA---PNDISTFIPQLMALKGSASAPVVRVPTNEPVI-IKRLLDIGFY 93 (256)
T ss_dssp EEEEEECSCSHHHHHHHTT--SCCSEEEEESSSS---SCCHHHHHHHHHHTTTCSSEEEEECSSSCHHH-HHHHHHTTCC
T ss_pred eEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCC---CCCHHHHHHHHHHHHhCCCcEEEECCCCCHHH-HHHHHhcCCc
Confidence 4688888889988777665 3589999999886 653 445555555567888888665443 6778899999
Q ss_pred eEEEec-CCHHHHHHHHHhhc
Q 024251 185 GIVLKV-EDVKAVLALKEYFD 204 (270)
Q Consensus 185 GVvl~~-~d~~~v~~l~~~~~ 204 (270)
||+++= +++++++++.+.+.
T Consensus 94 gI~~P~V~s~~ev~~~~~~~~ 114 (256)
T 1dxe_A 94 NFLIPFVETKEEAELAVASTR 114 (256)
T ss_dssp EEEESCCCSHHHHHHHHHTTS
T ss_pred eeeecCcCCHHHHHHHHHHhc
Confidence 998853 47899988887764
No 6
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=93.01 E-value=0.37 Score=42.79 Aligned_cols=92 Identities=8% Similarity=0.076 Sum_probs=66.2
Q ss_pred CC-eEEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhh---cccCCCceEEEEcCCHHHHHHHHHHHhccc
Q 024251 108 DR-RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVA---SFQGSGKTVFAISKTPSEAQIFLEALEQGL 183 (270)
Q Consensus 108 gk-~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA---~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~ 183 (270)
|+ .++.+..+.+++..+.+... ..|+++++..|- ....|.+.+ .++..+..++..++..+. .....+|+.|+
T Consensus 16 g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~-~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~-~~i~~~l~~g~ 91 (267)
T 2vws_A 16 GEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHA-PNTIQDLYHQLQAVAPYASQPVIRPVEGSK-PLIKQVLDIGA 91 (267)
T ss_dssp TCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTS-CCCHHHHHHHHHHHTTSSSEEEEECSSCCH-HHHHHHHHTTC
T ss_pred CCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCC-CCCHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHhCC
Confidence 55 57899999999988877653 589999998885 344554433 333345678888875443 33466788999
Q ss_pred CeEEEec-CCHHHHHHHHHhh
Q 024251 184 GGIVLKV-EDVKAVLALKEYF 203 (270)
Q Consensus 184 DGVvl~~-~d~~~v~~l~~~~ 203 (270)
|||+++= +++++++++.+.+
T Consensus 92 ~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 92 QTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp CEEEECCCCSHHHHHHHHHHT
T ss_pred CEEEeCCCCCHHHHHHHHHHH
Confidence 9999953 5789998887765
No 7
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=91.31 E-value=1.3 Score=38.92 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhc-ccCeEEEecCCHH
Q 024251 158 SGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (270)
Q Consensus 158 ~~~~i~a~v~~~~eA~~~l~~LE~-G~DGVvl~~~d~~ 194 (270)
....|++.+.+++-...+-+++.. |+||+.+-|.|..
T Consensus 144 ~~~~v~~~IEt~~av~~~~eIa~~~~vd~l~iG~~DL~ 181 (256)
T 1dxe_A 144 KNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLA 181 (256)
T ss_dssp TSCEEEEEECSHHHHHTHHHHHTSTTCCEEEECHHHHH
T ss_pred cccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHH
Confidence 356899999999999999999875 9999999887653
No 8
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=90.58 E-value=0.59 Score=43.43 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=65.4
Q ss_pred eEEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhc---ccCCC---ceEEEEcCCHHHHHHHHHHHhccc
Q 024251 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVAS---FQGSG---KTVFAISKTPSEAQIFLEALEQGL 183 (270)
Q Consensus 110 ~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~---~q~~~---~~i~a~v~~~~eA~~~l~~LE~G~ 183 (270)
.++.+..+.+++.++.+... ..|+++++..|. ....|.+... ++..+ ..++..+++.+.. .+-.+|+.|+
T Consensus 43 ~ig~~l~i~~p~~~e~a~~~--GaD~vilDlEha-~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~-di~~~LdaGa 118 (339)
T 1izc_A 43 LMGVAHGIPSTFVTKVLAAT--KPDFVWIDVEHG-MFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEV-SLSTALDAGA 118 (339)
T ss_dssp EEEEEECSCCHHHHHHHHHT--CCSEEEEETTTS-CCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHH-HHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHhC--CCCEEEEECCCC-CCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHH-HHHHHHhCCC
Confidence 46788888899987777653 589999998874 3455554333 22112 5789999887654 4566788999
Q ss_pred CeEEEe-cCCHHHHHHHHHhhc
Q 024251 184 GGIVLK-VEDVKAVLALKEYFD 204 (270)
Q Consensus 184 DGVvl~-~~d~~~v~~l~~~~~ 204 (270)
+||+++ .+++++++++++.+.
T Consensus 119 ~gImlP~V~saee~~~~~~~~~ 140 (339)
T 1izc_A 119 AGIVIPHVETVEEVREFVKEMY 140 (339)
T ss_dssp SEEEETTCCCHHHHHHHHHHHS
T ss_pred CEEEeCCCCCHHHHHHHHHHhc
Confidence 999885 347899999888764
No 9
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=90.58 E-value=0.58 Score=38.96 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=66.3
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceee-ee-eeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIAL-LD-PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~-i~-~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
-.+.+..+++.|++.+-+...+.+..+.+.++.. .. ++. +|. ..+.++++++.+... .++.+
T Consensus 21 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~-------------vg~-g~~~~~~~i~~a~~~--Gad~V 84 (212)
T 2v82_A 21 ALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKAL-------------IGA-GTVLKPEQVDALARM--GCQLI 84 (212)
T ss_dssp HHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSE-------------EEE-ECCCSHHHHHHHHHT--TCCEE
T ss_pred HHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeE-------------EEe-ccccCHHHHHHHHHc--CCCEE
Confidence 3678888999999998876544333333332211 00 111 111 123567766665543 46777
Q ss_pred EEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC---CHHHHHHHHH
Q 024251 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKE 201 (270)
Q Consensus 137 vv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~~ 201 (270)
.+...+ ..++...+..+..++..+.|++|++. +.+.|+|.|.+.|. +++.++++++
T Consensus 85 ~~~~~~------~~~~~~~~~~g~~~~~g~~t~~e~~~---a~~~G~d~v~v~~t~~~g~~~~~~l~~ 143 (212)
T 2v82_A 85 VTPNIH------SEVIRRAVGYGMTVCPGCATATEAFT---ALEAGAQALKIFPSSAFGPQYIKALKA 143 (212)
T ss_dssp ECSSCC------HHHHHHHHHTTCEEECEECSHHHHHH---HHHTTCSEEEETTHHHHCHHHHHHHHT
T ss_pred EeCCCC------HHHHHHHHHcCCCEEeecCCHHHHHH---HHHCCCCEEEEecCCCCCHHHHHHHHH
Confidence 654433 22333333334566666899999854 46789999998653 3344444433
No 10
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=90.54 E-value=1.4 Score=38.45 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=62.6
Q ss_pred hhHHHHHHHhCCcEEEEcCc------c-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC
Q 024251 60 KQVMTAAVERGWNTFVFLSE------N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~------~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~ 132 (270)
.+-+..+++.|+|.+++... . .+..+...+. |.. +.+.+.+.++.+++.. ..
T Consensus 91 ~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~-----------------g~~--v~~~v~t~eea~~a~~--~G 149 (229)
T 3q58_A 91 LQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLH-----------------GLL--AMADCSTVNEGISCHQ--KG 149 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT-----------------TCE--EEEECSSHHHHHHHHH--TT
T ss_pred HHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHC-----------------CCE--EEEecCCHHHHHHHHh--CC
Confidence 44578899999998876431 1 2233322222 332 3456778777655543 35
Q ss_pred CceEEEeCCCCe-----eechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHHhcccCeEEEec
Q 024251 133 AENIVIDLPDWQ-----VIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 133 ~~~vvv~~~DWt-----iIPlENlIA~~q~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
++++.+...+-| --|--+++.++...+..+++. ++++++++.++ +.|+|||++-.
T Consensus 150 ad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~~ipvIA~GGI~t~~d~~~~~---~~GadgV~VGs 211 (229)
T 3q58_A 150 IEFIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAI---EHGAWAVTVGS 211 (229)
T ss_dssp CSEEECTTTTSSSSCCCSSCCHHHHHHHHTTTCCEEEESSCCSHHHHHHHH---HTTCSEEEECH
T ss_pred CCEEEecCccCCCCCcCCCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHH---HcCCCEEEEch
Confidence 777765322211 123224444443335567776 57888887765 56999999874
No 11
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=90.30 E-value=0.19 Score=44.76 Aligned_cols=140 Identities=10% Similarity=0.029 Sum_probs=83.9
Q ss_pred EEEEEe-CchhHHHHHHHhCCcEEEEcCcch----hhhhh------ccceeeeeeeeecCCc--cc---cCCCCeEEEEE
Q 024251 52 RVWIWT-ESKQVMTAAVERGWNTFVFLSENQ----QLAID------WSTIALLDPLFIKEGE--VY---DSGDRRVGSII 115 (270)
Q Consensus 52 ~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~~~----e~a~~------l~~i~~i~~l~~~~g~--~~---~~~gk~v~~~v 115 (270)
-.|+.. .+.+.+..|..+|+|.++++-||. +++.. .+.... .+-++..+ .+ -..|-.....=
T Consensus 18 g~~~~~~~~p~~~e~a~~~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~--~VRVn~~~~~di~~~ld~G~~gI~lP 95 (261)
T 3qz6_A 18 GTMLNLVYNPDIVRIYAEAGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSV--LVRIPQVDRAHVQRLLDIGAEGFMIP 95 (261)
T ss_dssp EEEESSCCCTTHHHHHHHTTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEE--EEECSSCCHHHHHHHHHHTCCEEEET
T ss_pred EEEEecCCCHHHHHHHhcCCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeE--EEEeCCCCHHHHHHHHhcCCCEEEEC
Confidence 478888 889999999999999999998871 22211 111110 01111110 00 01132222233
Q ss_pred EecChhhhhhhccccCC-----CceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHh-cccCeEEEe
Q 024251 116 EVSTPQELQQLQPADGQ-----AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLK 189 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~-----~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE-~G~DGVvl~ 189 (270)
.|.+++|.+.+...... ..+-......|...|+++-++... ....|++.+.+++-...+-+++. .|+||+.+-
T Consensus 96 ~v~saed~~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~~~y~~~~~-~~~~v~~mIEt~~av~~~~eIaa~~~vd~l~iG 174 (261)
T 3qz6_A 96 GVQSAETMRETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERN-DEIFIMAQIEHVKAVEDIDSILAVQGVDAVIFG 174 (261)
T ss_dssp TCCSHHHHHHHHHHHSCTTTCCCCCCCGGGGTTCCCCHHHHHHHHH-TTCEEEEEECCHHHHHTHHHHHTSTTCCEEEEC
T ss_pred CcCCHHHHHHHHHHhccCCCCCcCcccchhhhccccchhhHHhcCC-CCeEEEEEECCHHHHHHHHHHhCCCCCCEEEEC
Confidence 46777877776554311 011011223455556666666533 45789999999999999999997 499999998
Q ss_pred cCCHH
Q 024251 190 VEDVK 194 (270)
Q Consensus 190 ~~d~~ 194 (270)
|.|..
T Consensus 175 ~~DL~ 179 (261)
T 3qz6_A 175 PRDLS 179 (261)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 12
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=90.18 E-value=4 Score=35.47 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=68.9
Q ss_pred hhHHHHHHHhCCcEEEEcCc-chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec-ChhhhhhhccccCCCceEE
Q 024251 60 KQVMTAAVERGWNTFVFLSE-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~-~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~-~~ed~e~~~~~~~~~~~vv 137 (270)
.++..++.+.|+.++-+... +...+++.-++-++.. ..++. + |.. +.|+ +.++.+++.. ..++.|+
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~Pvig~-~k~~~---~--~~~----~~I~~~~~~i~~~~~--aGad~I~ 106 (229)
T 3q58_A 39 AAMAQAAASAGAVAVRIEGIENLRTVRPHLSVPIIGI-IKRDL---T--GSP----VRITPYLQDVDALAQ--AGADIIA 106 (229)
T ss_dssp HHHHHHHHHTTCSEEEEESHHHHHHHGGGCCSCEEEE-CBCCC---S--SCC----CCBSCSHHHHHHHHH--HTCSEEE
T ss_pred HHHHHHHHHCCCcEEEECCHHHHHHHHHhcCCCEEEE-EeecC---C--CCc----eEeCccHHHHHHHHH--cCCCEEE
Confidence 67788889999999988642 2233333333322211 01111 0 100 1122 3345454433 4678888
Q ss_pred EeCC---CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 138 IDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 138 v~~~---DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
++.. +. -.++.++..+...+..+++.+.+.+||+.+ ++.|+|.|..
T Consensus 107 l~~~~~~~p--~~l~~~i~~~~~~g~~v~~~v~t~eea~~a---~~~Gad~Ig~ 155 (229)
T 3q58_A 107 FDASFRSRP--VDIDSLLTRIRLHGLLAMADCSTVNEGISC---HQKGIEFIGT 155 (229)
T ss_dssp EECCSSCCS--SCHHHHHHHHHHTTCEEEEECSSHHHHHHH---HHTTCSEEEC
T ss_pred ECccccCCh--HHHHHHHHHHHHCCCEEEEecCCHHHHHHH---HhCCCCEEEe
Confidence 8765 23 367888988877778999999999999754 5789999963
No 13
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=88.53 E-value=5.7 Score=34.51 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=68.6
Q ss_pred hhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec-ChhhhhhhccccCCCceEE
Q 024251 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~-~~ed~e~~~~~~~~~~~vv 137 (270)
.++..++.+.|+.++.+.. ++...+++.-++-++... .++ .. |.. +.|+ +.++.+++.. ..++.|+
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~Pvig~~-k~d---~~--~~~----~~I~~~~~~i~~~~~--~Gad~V~ 106 (232)
T 3igs_A 39 AAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGII-KRD---LD--ESP----VRITPFLDDVDALAQ--AGAAIIA 106 (232)
T ss_dssp HHHHHHHHHTTCSEEEEESHHHHHHHHTTCCSCEEEEC-BCC---CS--SCC----CCBSCSHHHHHHHHH--HTCSEEE
T ss_pred HHHHHHHHHCCCeEEEECCHHHHHHHHHhcCCCEEEEE-eec---CC--Ccc----eEeCccHHHHHHHHH--cCCCEEE
Confidence 6778888999999998864 223333333333222110 010 00 100 1122 3345444433 3678888
Q ss_pred EeCC---CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 138 IDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 138 v~~~---DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
++.. +. -.++.++..+...+..+++.+.+.+||+.+ ++.|+|.|..
T Consensus 107 l~~~~~~~p--~~l~~~i~~~~~~g~~v~~~v~t~eea~~a---~~~Gad~Ig~ 155 (232)
T 3igs_A 107 VDGTARQRP--VAVEALLARIHHHHLLTMADCSSVDDGLAC---QRLGADIIGT 155 (232)
T ss_dssp EECCSSCCS--SCHHHHHHHHHHTTCEEEEECCSHHHHHHH---HHTTCSEEEC
T ss_pred ECccccCCH--HHHHHHHHHHHHCCCEEEEeCCCHHHHHHH---HhCCCCEEEE
Confidence 8765 23 357788888877778899999999999754 6789999863
No 14
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=88.26 E-value=1.6 Score=38.64 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=67.9
Q ss_pred CeEEEEEEecChhhhhhhccccCCCceEEEeCCCCeeec--------hhhhhhcccC-----CCceEEEEcCCHH---HH
Q 024251 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP--------AENIVASFQG-----SGKTVFAISKTPS---EA 172 (270)
Q Consensus 109 k~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIP--------lENlIA~~q~-----~~~~i~a~v~~~~---eA 172 (270)
.+...++...+++.++.+.. ...|.++++..| .+.| .+|+...++. .+..++..++..+ ..
T Consensus 8 ~rs~L~~p~~~~~~~~~a~~--~gaD~vilDlEd-av~~~~~~k~~Ar~~v~~~l~~~~~~~~~~~~~VRv~~~~~~~~~ 84 (284)
T 1sgj_A 8 LRSVLFAPGNRADLIAKLPR--SAPDAVVIDLED-AVPGTAEAKAAARPVAHDAARDLIAAAPHLAVFVRVNALHSPYFE 84 (284)
T ss_dssp CSEEEEEETTCHHHHHHTTT--TCCSEEEEESST-TSCSSHHHHHHHHHHHHHHHHHHHHHSTTSEEEEECCCTTSTTHH
T ss_pred CceEEEccCCCHHHHHHHHh--CCCCEEEEECCC-CCCCchhhHHHHHHHHHHHHHhcccccCCCeEEEEeCCCCCHhHH
Confidence 45667888889988777664 468999999998 4566 6788776653 3357888888643 34
Q ss_pred HHHHHHHhcccCeEEEec-CCHHHHHHHHHhhcc
Q 024251 173 QIFLEALEQGLGGIVLKV-EDVKAVLALKEYFDG 205 (270)
Q Consensus 173 ~~~l~~LE~G~DGVvl~~-~d~~~v~~l~~~~~~ 205 (270)
.-+..+|+ |+|||+|+= +++++++++.+.+..
T Consensus 85 ~dl~~~l~-g~~~i~lPkv~s~~~v~~~~~~l~~ 117 (284)
T 1sgj_A 85 DDLSVLTP-ELSGVVVPKLEMGAEARQVAQMLQE 117 (284)
T ss_dssp HHGGGCCT-TSSEEEECSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCEEEeCCCCCHHHHHHHHHHHHh
Confidence 45556677 999999954 468999988887753
No 15
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=88.06 E-value=1.7 Score=39.23 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=31.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHhc-ccCeEEEecCCHH
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~-G~DGVvl~~~d~~ 194 (270)
...|++.+.+++-...+-+++.. |+||+.+-|.|..
T Consensus 166 ~~~vi~mIEt~~av~n~deIaa~~~vD~l~iG~~DLs 202 (287)
T 2v5j_A 166 QMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLS 202 (287)
T ss_dssp HCEEEEEECSHHHHHTHHHHHTSTTEEEEEECHHHHH
T ss_pred CcEEEEEECcHHHHHHHHHHhCcCCCCEEEECHHHHH
Confidence 35799999999999999999975 9999999887653
No 16
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=87.50 E-value=4.4 Score=29.17 Aligned_cols=67 Identities=9% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++..-.. ..--.++..+.. ....++......+ ......+++.|++|++.+|-+++++.+.
T Consensus 54 ~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~pii~ls~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 124 (140)
T 1k68_A 54 SRPDLILLXLNLPK-KDGREVLAEIKSDPTLKRIPVVVLSTSIN-EDDIFHSYDLHVNCYITKSANLSQLFQI 124 (140)
T ss_dssp CCCSEEEECSSCSS-SCHHHHHHHHHHSTTGGGSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCCcEEEEecCCCc-ccHHHHHHHHHcCcccccccEEEEecCCc-HHHHHHHHHhchhheecCCCCHHHHHHH
Confidence 35788888554322 222234444332 3455666555443 3445678899999999999999876553
No 17
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=87.49 E-value=2.5 Score=37.46 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=72.2
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcCcch----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhc
Q 024251 52 RVWIWTESKQVMTAAVERGWNTFVFLSENQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ 127 (270)
Q Consensus 52 ~vWiw~~~Ke~vT~ALEsG~d~~vv~~~~~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~ 127 (270)
..|+...+.+.+..|..+|+|.++++-||. +.+...-+. +...|+.+.+++.-.++.++..+.
T Consensus 21 g~~~~~~~p~~~e~a~~~GaD~v~lDlE~~~~~~~~~~~~~~a-------------~~~~~~~~~VRv~~~~~~~i~~~l 87 (267)
T 2vws_A 21 GLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQA-------------VAPYASQPVIRPVEGSKPLIKQVL 87 (267)
T ss_dssp EEEECSCCHHHHHHHHTTCCSEEEEETTTSCCCHHHHHHHHHH-------------HTTSSSEEEEECSSCCHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHH-------------HHhCCCcEEEEeCCCCHHHHHHHH
Confidence 467777889999999999999999997762 222211110 011133333333323344443333
Q ss_pred cccCCCceEEEeCCCCeeechhhhhhccc-----------------------------CCCceEEEEcCCHHHHHHHHHH
Q 024251 128 PADGQAENIVIDLPDWQVIPAENIVASFQ-----------------------------GSGKTVFAISKTPSEAQIFLEA 178 (270)
Q Consensus 128 ~~~~~~~~vvv~~~DWtiIPlENlIA~~q-----------------------------~~~~~i~a~v~~~~eA~~~l~~ 178 (270)
. ...+.|++-.-. +.=-++.+++.+. +....|++.+.+++-..-+-++
T Consensus 88 ~--~g~~~I~~P~V~-s~ee~~~~~~~~~~~p~G~Rg~~~~~~~~~~~g~~~~y~~~~~~~~~v~~~IEt~~av~~~~eI 164 (267)
T 2vws_A 88 D--IGAQTLLIPMVD-TAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEI 164 (267)
T ss_dssp H--TTCCEEEECCCC-SHHHHHHHHHHTSCTTTSCCCSCGGGSGGGGGGTSTTHHHHHHHHCEEEEECCSHHHHHTHHHH
T ss_pred H--hCCCEEEeCCCC-CHHHHHHHHHHHcCCCCCccccccchhhhhhcCcchhhhhhcccccEEEEEECCHHHHHHHHHH
Confidence 2 223444441110 0000222222211 1135799999999999999999
Q ss_pred Hhc-ccCeEEEecCCHH
Q 024251 179 LEQ-GLGGIVLKVEDVK 194 (270)
Q Consensus 179 LE~-G~DGVvl~~~d~~ 194 (270)
+.. |+||+.+-|.|..
T Consensus 165 a~~~gvd~l~iG~~DL~ 181 (267)
T 2vws_A 165 LDVEGIDGVFIGPADLS 181 (267)
T ss_dssp HTSTTCCEEEECHHHHH
T ss_pred hCCCCCCEEEEChHHHH
Confidence 875 8999999887653
No 18
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=87.44 E-value=4.7 Score=29.54 Aligned_cols=82 Identities=9% Similarity=0.087 Sum_probs=52.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.++.-..... ...+.+|++..-.. ..--.++..+.. ....++......+.......+++.|+++++.+|-
T Consensus 35 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~ 112 (140)
T 3grc_A 35 MVHSAAQALEQVAR-RPYAAMTVDLNLPD-QDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPI 112 (140)
T ss_dssp EECSHHHHHHHHHH-SCCSEEEECSCCSS-SCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSC
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCC-CCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCC
Confidence 34555543333222 45788888554322 222234444432 4567888888777776666899999999999999
Q ss_pred CHHHHHHH
Q 024251 192 DVKAVLAL 199 (270)
Q Consensus 192 d~~~v~~l 199 (270)
++.++.+.
T Consensus 113 ~~~~l~~~ 120 (140)
T 3grc_A 113 DENLLILS 120 (140)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99876543
No 19
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=87.39 E-value=3.3 Score=37.51 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=69.7
Q ss_pred eCchhHHHHHHHhCCcEEEEcCc-chhhhh-hccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc-cCCC
Q 024251 57 TESKQVMTAAVERGWNTFVFLSE-NQQLAI-DWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA-DGQA 133 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~~-~~e~a~-~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~-~~~~ 133 (270)
..+.+++.++-+.|.-+++.... +.+... .+.++... .++++++-+-+.++...+.+... ..+.
T Consensus 37 vs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~-------------~~~p~gVnl~~~~~~~~~~~~~~~~~g~ 103 (326)
T 3bo9_A 37 AGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQK-------------TDKPFGVNIILVSPWADDLVKVCIEEKV 103 (326)
T ss_dssp TSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTT-------------CSSCEEEEEETTSTTHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-------------cCCCEEEEEeccCCCHHHHHHHHHHCCC
Confidence 35688999999999989886542 222211 11222110 12344444444333222222211 2467
Q ss_pred ceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 134 ~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
+.|.+.+.+ | ..++..+...+.+++..+.+.++|+.+ .+.|+|+|++..
T Consensus 104 d~V~l~~g~----p-~~~~~~l~~~g~~v~~~v~s~~~a~~a---~~~GaD~i~v~g 152 (326)
T 3bo9_A 104 PVVTFGAGN----P-TKYIRELKENGTKVIPVVASDSLARMV---ERAGADAVIAEG 152 (326)
T ss_dssp SEEEEESSC----C-HHHHHHHHHTTCEEEEEESSHHHHHHH---HHTTCSCEEEEC
T ss_pred CEEEECCCC----c-HHHHHHHHHcCCcEEEEcCCHHHHHHH---HHcCCCEEEEEC
Confidence 888887765 4 456777776788999999999999865 578999999965
No 20
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=87.14 E-value=6.1 Score=29.59 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=47.8
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.+|++..-... .--.++..+. .....|+...... +......+++.|++|++.+|-++
T Consensus 51 ~~~~~~~al~~l~~-~~~dlii~D~~l~~~-~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~Kp~~~ 127 (150)
T 4e7p_A 51 QAKNGQEAIQLLEK-ESVDIAILDVEMPVK-TGLEVLEWIRSEKLETKVVVVTTFK-RAGYFERAVKAGVDAYVLKERSI 127 (150)
T ss_dssp EESSHHHHHHHHTT-SCCSEEEECSSCSSS-CHHHHHHHHHHTTCSCEEEEEESCC-CHHHHHHHHHTTCSEEEETTSCH
T ss_pred EECCHHHHHHHhhc-cCCCEEEEeCCCCCC-cHHHHHHHHHHhCCCCeEEEEeCCC-CHHHHHHHHHCCCcEEEecCCCH
Confidence 44565543333222 347888886543322 2222333332 2345666665544 34556778999999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
+++.+.
T Consensus 128 ~~l~~~ 133 (150)
T 4e7p_A 128 ADLMQT 133 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 21
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=86.92 E-value=2.5 Score=30.97 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=47.7
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++....... ...+.+|++..-... .--.++..+.. ....|+..... .+......+++.|+++++.+|-++
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~-~g~~~~~~l~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~kP~~~ 112 (137)
T 3hdg_A 36 SAGDGEEGERLFGL-HAPDVIITDIRMPKL-GGLEMLDRIKAGGAKPYVIVISAF-SEMKYFIKAIELGVHLFLPKPIEP 112 (137)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSSCSSS-CHHHHHHHHHHTTCCCEEEECCCC-CCHHHHHHHHHHCCSEECCSSCCH
T ss_pred EECCHHHHHHHHhc-cCCCEEEEeCCCCCC-CHHHHHHHHHhcCCCCcEEEEecC-cChHHHHHHHhCCcceeEcCCCCH
Confidence 34565554333322 356888886543321 12223333322 23455555444 344566788999999999999999
Q ss_pred HHHHHHH
Q 024251 194 KAVLALK 200 (270)
Q Consensus 194 ~~v~~l~ 200 (270)
.++.+.-
T Consensus 113 ~~l~~~i 119 (137)
T 3hdg_A 113 GRLMETL 119 (137)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766543
No 22
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=86.80 E-value=0.96 Score=42.27 Aligned_cols=42 Identities=19% Similarity=0.099 Sum_probs=36.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
.+|..+|.|.+|++. +++.|+|+|+|+.-+++++++..+.+.
T Consensus 232 ~kIeVEVdtldea~e---Al~aGaD~I~LDn~~~~~l~~av~~l~ 273 (320)
T 3paj_A 232 KPVEVETETLAELEE---AISAGADIIMLDNFSLEMMREAVKINA 273 (320)
T ss_dssp SCEEEEESSHHHHHH---HHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred CeEEEEECCHHHHHH---HHHcCCCEEEECCCCHHHHHHHHHHhC
Confidence 579999999999875 556799999999999999988887763
No 23
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=86.57 E-value=1.2 Score=43.43 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 157 GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 157 ~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
+....|++.+.+++-.+-+-++++. +|||++.+.|.+
T Consensus 212 ~~~i~IiakIEt~eav~nldeI~~~-sDgImVargDLg 248 (470)
T 1e0t_A 212 GENIHIISKIENQEGLNNFDEILEA-SDGIMVARGDLG 248 (470)
T ss_dssp CTTCEEEEEECSHHHHHTHHHHHHH-SSEEEEEHHHHH
T ss_pred CCCceEEEEECCHHHHHhHHHHHHH-CCEEEECchHhh
Confidence 3457899999999988888888887 999999998864
No 24
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=86.19 E-value=4.6 Score=29.71 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=48.1
Q ss_pred EecChhhhhhhccc-cCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 116 EVSTPQELQQLQPA-DGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 116 ~V~~~ed~e~~~~~-~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
...+.++....... ....+.++++..-... .--.++..+. .....|+...... +......+++.|++|++.+|-+
T Consensus 32 ~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~-~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~kp~~ 109 (143)
T 3jte_A 32 TASSSTEGLRIFTENCNSIDVVITDMKMPKL-SGMDILREIKKITPHMAVIILTGHG-DLDNAILAMKEGAFEYLRKPVT 109 (143)
T ss_dssp EESSHHHHHHHHHHTTTTCCEEEEESCCSSS-CHHHHHHHHHHHCTTCEEEEEECTT-CHHHHHHHHHTTCSEEEESSCC
T ss_pred EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCC-cHHHHHHHHHHhCCCCeEEEEECCC-CHHHHHHHHHhCcceeEeCCCC
Confidence 34555543333322 3457888886653321 1122333322 2345666655443 4456678899999999999999
Q ss_pred HHHHHHH
Q 024251 193 VKAVLAL 199 (270)
Q Consensus 193 ~~~v~~l 199 (270)
+.++.+.
T Consensus 110 ~~~l~~~ 116 (143)
T 3jte_A 110 AQDLSIA 116 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876543
No 25
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=85.54 E-value=3.5 Score=35.85 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=60.5
Q ss_pred hhHHHHHHHhCCcEEEEcCc-------chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC
Q 024251 60 KQVMTAAVERGWNTFVFLSE-------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~-------~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~ 132 (270)
.+.+..+++.|+|.+++... -.+..+...+. |.. +.+.+.+.++.+.+.. ..
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~-----------------g~~--v~~~v~t~eea~~a~~--~G 149 (232)
T 3igs_A 91 LDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHH-----------------HLL--TMADCSSVDDGLACQR--LG 149 (232)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT-----------------TCE--EEEECCSHHHHHHHHH--TT
T ss_pred HHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHC-----------------CCE--EEEeCCCHHHHHHHHh--CC
Confidence 44578899999998876431 12233322222 332 3456778777655543 35
Q ss_pred CceEEEeCCCCe-----eechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 133 AENIVIDLPDWQ-----VIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 133 ~~~vvv~~~DWt-----iIPlENlIA~~q~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
++++.+...+-+ --|--+++.++...+..+++. +.++++++.++ +.|+|||++-..
T Consensus 150 ad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~~ipvIA~GGI~t~~d~~~~~---~~GadgV~VGsa 212 (232)
T 3igs_A 150 ADIIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAI---RYGAWAVTVGSA 212 (232)
T ss_dssp CSEEECTTTTSSSSSCCSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHH---HTTCSEEEECHH
T ss_pred CCEEEEcCccCCCCCCCCCCCHHHHHHHHhcCCcEEEECCCCCHHHHHHHH---HcCCCEEEEehH
Confidence 777764322111 112112333332224567766 45888887765 569999998643
No 26
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=85.52 E-value=8.3 Score=33.92 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=51.5
Q ss_pred CCCeEEEEEEecChhhhhhhccccCCCceEEEeCC-------CCeeechhhhhhcccC--CCceEEEEcC-CHHHHHHHH
Q 024251 107 GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP-------DWQVIPAENIVASFQG--SGKTVFAISK-TPSEAQIFL 176 (270)
Q Consensus 107 ~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~-------DWtiIPlENlIA~~q~--~~~~i~a~v~-~~~eA~~~l 176 (270)
.++.+|+ .+.+.++++++.. ..+||+.+..- +-..+.+|.+-.-.+. .+..+++.-. +++++ -
T Consensus 134 ~~~~iG~--S~ht~~Ea~~A~~--~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni---~ 206 (243)
T 3o63_A 134 PDTLIGR--STHDPDQVAAAAA--GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRL---P 206 (243)
T ss_dssp TTCEEEE--EECSHHHHHHHHH--SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTH---H
T ss_pred CCCEEEE--eCCCHHHHHHHhh--CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHH---H
Confidence 3566665 4578877665443 46899999431 1113456554432222 2455666532 55544 4
Q ss_pred HHHhcccCeEEE-----ecCCHH-HHHHHHHhh
Q 024251 177 EALEQGLGGIVL-----KVEDVK-AVLALKEYF 203 (270)
Q Consensus 177 ~~LE~G~DGVvl-----~~~d~~-~v~~l~~~~ 203 (270)
++++.|+|||.+ ..+||. .+++|++.+
T Consensus 207 ~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 207 AVLDAGARRIVVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp HHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 567899999997 456774 455666554
No 27
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=85.50 E-value=3.1 Score=35.86 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=62.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
-.+++.++++.|++.+=++..+..-.+.+..+..- ++ +..+++= .+.+.++.+.+... .+++++.
T Consensus 30 ~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~----------~~--~~~vgag-tvi~~d~~~~A~~a--GAd~v~~ 94 (214)
T 1wbh_A 30 AVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKE----------VP--EAIVGAG-TVLNPQQLAEVTEA--GAQFAIS 94 (214)
T ss_dssp HHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHH----------CT--TSEEEEE-SCCSHHHHHHHHHH--TCSCEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHH----------Cc--CCEEeeC-EEEEHHHHHHHHHc--CCCEEEc
Confidence 35689999999999888875332111111111110 00 1222332 25677776665543 5678877
Q ss_pred eCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
-..| .|+...-.. .+..++..+.|++|++. +++.|+|-|-+-|.
T Consensus 95 p~~d---~~v~~~~~~---~g~~~i~G~~t~~e~~~---A~~~Gad~v~~Fpa 138 (214)
T 1wbh_A 95 PGLT---EPLLKAATE---GTIPLIPGISTVSELML---GMDYGLKEFKFFPA 138 (214)
T ss_dssp SSCC---HHHHHHHHH---SSSCEEEEESSHHHHHH---HHHTTCCEEEETTT
T ss_pred CCCC---HHHHHHHHH---hCCCEEEecCCHHHHHH---HHHCCCCEEEEecC
Confidence 4433 233333332 33455656999999855 46899999988884
No 28
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=84.60 E-value=4.5 Score=30.02 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=46.5
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCC-CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~-~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
...+.++.-..... .+.+.++++..-... .--.++..+... ...++...... +......+++.|++|++.+|-+++
T Consensus 33 ~~~~~~~al~~~~~-~~~dlvllD~~l~~~-~g~~l~~~l~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~~~ 109 (136)
T 2qzj_A 33 LAYNCEEAIGKIFS-NKYDLIFLEIILSDG-DGWTLCKKIRNVTTCPIVYMTYIN-EDQSILNALNSGGDDYLIKPLNLE 109 (136)
T ss_dssp EESSHHHHHHHHHH-CCCSEEEEESEETTE-EHHHHHHHHHTTCCCCEEEEESCC-CHHHHHHHHHTTCCEEEESSCCHH
T ss_pred EECCHHHHHHHHHh-cCCCEEEEeCCCCCC-CHHHHHHHHccCCCCCEEEEEcCC-CHHHHHHHHHcCCcEEEECCCCHH
Confidence 44555543332222 356888885432221 112344444322 44566554443 334567889999999999999998
Q ss_pred HHHHH
Q 024251 195 AVLAL 199 (270)
Q Consensus 195 ~v~~l 199 (270)
++.+.
T Consensus 110 ~L~~~ 114 (136)
T 2qzj_A 110 ILYAK 114 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 29
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=84.58 E-value=0.83 Score=44.69 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=88.6
Q ss_pred CchhHHH--HHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCc
Q 024251 58 ESKQVMT--AAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 58 ~~Ke~vT--~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
+|++.+. .|+|.|+|.+.++. .+++.+.++.++ +.+.|..+..+.+|.+++-++.+..-+...|
T Consensus 182 kD~~dl~~~~~~~~~vD~Ia~SfVr~a~Dv~~~r~~-------------l~~~g~~~~iiaKIE~~eav~nldeIl~~sD 248 (461)
T 3qtg_A 182 EDVEALKAISPIRDNIDYVAISLAKSCKDVDSVRSL-------------LTELGFQSQVAVKIETKGAVNNLEELVQCSD 248 (461)
T ss_dssp HHHHHHHHHGGGGGGCCEEEECSCCSHHHHHHHHHH-------------HHHTTCCCEEEEEECSHHHHHTHHHHHHTCS
T ss_pred HHHHHHHHHHHhhcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCceEEEEECCHHHHHhHHHHHHhcc
Confidence 4788888 89999999988874 334555544443 3334556788999999999888766555678
Q ss_pred eEEEeCCCC-eeechhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecCC---
Q 024251 135 NIVIDLPDW-QVIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (270)
Q Consensus 135 ~vvv~~~DW-tiIPlENl-------IA~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~d--- 192 (270)
-++|--.|- -=||+|.+ |......+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 249 gImVaRGDLgvei~~e~v~~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAV~dGaDavMLSgETA~G 328 (461)
T 3qtg_A 249 YVVVARGDLGLHYGLDALPIVQRRIVHTSLKYGKPIAVATQLLDSMQSSPIPTRAEINDVFTTASMGVDSLWLTNETASG 328 (461)
T ss_dssp EEEEEHHHHTTTSCTTTHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEEEECHHHHTS
T ss_pred cEEEccccccccCCHHHHHHHHHHHHHHHHHhCCCEEEeccchHhhccCCCccHHHHHHHHHHHHhCCcEEEEcccccCC
Confidence 888843332 12455553 44333333344441 244578888899999999999998542
Q ss_pred --H-HHHHHHHHhhcc
Q 024251 193 --V-KAVLALKEYFDG 205 (270)
Q Consensus 193 --~-~~v~~l~~~~~~ 205 (270)
| +.|+-+.+++.+
T Consensus 329 ~yPveaV~~m~~I~~~ 344 (461)
T 3qtg_A 329 KYPLAAVSWLSRILMN 344 (461)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3 556666666644
No 30
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=84.54 E-value=2.2 Score=35.05 Aligned_cols=122 Identities=18% Similarity=0.135 Sum_probs=71.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
-.+++..+.+.|++.+-+.-+.....+.+..+... .+ +++.++.- .+.++++.+.+.. ..+|++ +
T Consensus 24 ~~~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~----------~~-~~~~ig~~-~v~~~~~~~~a~~--~Gad~i-v 88 (205)
T 1wa3_A 24 AKEKALAVFEGGVHLIEITFTVPDADTVIKELSFL----------KE-KGAIIGAG-TVTSVEQCRKAVE--SGAEFI-V 88 (205)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHH----------HH-TTCEEEEE-SCCSHHHHHHHHH--HTCSEE-E
T ss_pred HHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHH----------CC-CCcEEEec-ccCCHHHHHHHHH--cCCCEE-E
Confidence 35678888889999886643221111111111110 01 13333321 3467777655544 457888 4
Q ss_pred eCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
...+. .+++..++..+..++..+.+++|++. +++.|+|.|-+.|.++..+..++++.
T Consensus 89 -~~~~~----~~~~~~~~~~g~~vi~g~~t~~e~~~---a~~~Gad~vk~~~~~~~g~~~~~~l~ 145 (205)
T 1wa3_A 89 -SPHLD----EEISQFCKEKGVFYMPGVMTPTELVK---AMKLGHTILKLFPGEVVGPQFVKAMK 145 (205)
T ss_dssp -CSSCC----HHHHHHHHHHTCEEECEECSHHHHHH---HHHTTCCEEEETTHHHHHHHHHHHHH
T ss_pred -cCCCC----HHHHHHHHHcCCcEECCcCCHHHHHH---HHHcCCCEEEEcCccccCHHHHHHHH
Confidence 33333 46677666677789999999998765 57999999998875444444444443
No 31
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=84.28 E-value=2.6 Score=36.72 Aligned_cols=121 Identities=17% Similarity=0.108 Sum_probs=66.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
-.+++.++++.|++.+=++..+..-.+.+..+..- ++ +..+++= .+.++++.+.+... .+++++.
T Consensus 31 ~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~----------~~--~l~vgaG-tvl~~d~~~~A~~a--GAd~v~~ 95 (224)
T 1vhc_A 31 ILPLADTLAKNGLSVAEITFRSEAAADAIRLLRAN----------RP--DFLIAAG-TVLTAEQVVLAKSS--GADFVVT 95 (224)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHH----------CT--TCEEEEE-SCCSHHHHHHHHHH--TCSEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHh----------Cc--CcEEeeC-cEeeHHHHHHHHHC--CCCEEEE
Confidence 35789999999999888875332111111112110 00 1222222 24467766655543 5678876
Q ss_pred eCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC----HHHHHHHHHhh
Q 024251 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 203 (270)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d----~~~v~~l~~~~ 203 (270)
-..| .| ++......+..++..+.|++|++. +++.|+|-|-+-|.. ++-+++++..+
T Consensus 96 p~~d---~~---v~~~ar~~g~~~i~Gv~t~~e~~~---A~~~Gad~vk~Fpa~~~gG~~~lk~l~~~~ 155 (224)
T 1vhc_A 96 PGLN---PK---IVKLCQDLNFPITPGVNNPMAIEI---ALEMGISAVKFFPAEASGGVKMIKALLGPY 155 (224)
T ss_dssp SSCC---HH---HHHHHHHTTCCEECEECSHHHHHH---HHHTTCCEEEETTTTTTTHHHHHHHHHTTT
T ss_pred CCCC---HH---HHHHHHHhCCCEEeccCCHHHHHH---HHHCCCCEEEEeeCccccCHHHHHHHHhhC
Confidence 4433 22 222222234445556999999855 568999999888843 33444444433
No 32
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=84.14 E-value=7.4 Score=35.12 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=70.5
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~--~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
+...+..|.+.|+|+++..-.. .+..+++-..+ ..-|. -+++++.+.++++.+... ..+.+
T Consensus 131 d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a-------------~~lGl--~~lvevh~~eEl~~A~~~--ga~iI 193 (272)
T 3tsm_A 131 DPYQVYEARSWGADCILIIMASVDDDLAKELEDTA-------------FALGM--DALIEVHDEAEMERALKL--SSRLL 193 (272)
T ss_dssp STHHHHHHHHTTCSEEEEETTTSCHHHHHHHHHHH-------------HHTTC--EEEEEECSHHHHHHHTTS--CCSEE
T ss_pred CHHHHHHHHHcCCCEEEEcccccCHHHHHHHHHHH-------------HHcCC--eEEEEeCCHHHHHHHHhc--CCCEE
Confidence 4556888999999998876421 11112211111 11132 367789999998776643 46788
Q ss_pred EEeCCCCeee--ch---hhhhhcccCCCceEEEEc--CCHHHHHHHHHHHhcccCeEEE-----ecCCHHH
Q 024251 137 VIDLPDWQVI--PA---ENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVL-----KVEDVKA 195 (270)
Q Consensus 137 vv~~~DWtiI--Pl---ENlIA~~q~~~~~i~a~v--~~~~eA~~~l~~LE~G~DGVvl-----~~~d~~~ 195 (270)
=++.+|-+.. .+ +.|+..+. .+.-++++. .++++++.+ ++.|+|||++ +++||.+
T Consensus 194 Ginnr~l~t~~~dl~~~~~L~~~ip-~~~~vIaesGI~t~edv~~l---~~~Ga~gvLVG~almr~~d~~~ 260 (272)
T 3tsm_A 194 GVNNRNLRSFEVNLAVSERLAKMAP-SDRLLVGESGIFTHEDCLRL---EKSGIGTFLIGESLMRQHDVAA 260 (272)
T ss_dssp EEECBCTTTCCBCTHHHHHHHHHSC-TTSEEEEESSCCSHHHHHHH---HTTTCCEEEECHHHHTSSCHHH
T ss_pred EECCCCCccCCCChHHHHHHHHhCC-CCCcEEEECCCCCHHHHHHH---HHcCCCEEEEcHHHcCCcCHHH
Confidence 7776653322 23 34555443 234566653 688888765 6899999998 4667753
No 33
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=83.63 E-value=5.6 Score=35.13 Aligned_cols=119 Identities=17% Similarity=0.085 Sum_probs=76.7
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch---hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~~---e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
+-.++..+.++.|++.+=++-... +..+++.+- ++ +..+|. ..|.+.++.+.+... .++
T Consensus 26 ~a~~~a~al~~gGi~~iEvt~~t~~a~~~I~~l~~~-------------~p--~~~IGA-GTVlt~~~a~~ai~A--GA~ 87 (217)
T 3lab_A 26 HAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKA-------------VP--EAIVGA-GTVCTADDFQKAIDA--GAQ 87 (217)
T ss_dssp GHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHH-------------CT--TSEEEE-ECCCSHHHHHHHHHH--TCS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHH-------------CC--CCeEee-ccccCHHHHHHHHHc--CCC
Confidence 357889999999999988864322 222222210 00 123333 367789987777664 567
Q ss_pred eEEEeCCCCeeechhhhhhcccCCCc------eEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH----HHHHHHHHhh
Q 024251 135 NIVIDLPDWQVIPAENIVASFQGSGK------TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV----KAVLALKEYF 203 (270)
Q Consensus 135 ~vvv~~~DWtiIPlENlIA~~q~~~~------~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~----~~v~~l~~~~ 203 (270)
+++.-..+.+ ++...+..+. -++..+.+++|+..+ +|.|+|.|=+-|.+. +-+++|+..+
T Consensus 88 fivsP~~~~e------vi~~~~~~~v~~~~~~~~~PG~~TptE~~~A---~~~Gad~vK~FPa~~~gG~~~lkal~~p~ 157 (217)
T 3lab_A 88 FIVSPGLTPE------LIEKAKQVKLDGQWQGVFLPGVATASEVMIA---AQAGITQLKCFPASAIGGAKLLKAWSGPF 157 (217)
T ss_dssp EEEESSCCHH------HHHHHHHHHHHCSCCCEEEEEECSHHHHHHH---HHTTCCEEEETTTTTTTHHHHHHHHHTTC
T ss_pred EEEeCCCcHH------HHHHHHHcCCCccCCCeEeCCCCCHHHHHHH---HHcCCCEEEECccccccCHHHHHHHHhhh
Confidence 8877554444 4443333344 799999999998765 899999999999763 4455555444
No 34
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=83.30 E-value=1.1 Score=44.82 Aligned_cols=135 Identities=13% Similarity=0.192 Sum_probs=86.4
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCC-CeEEEEEEecChhhhhhhccccCCCce
Q 024251 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~g-k~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
.|++.+.-||+.|+|.+.++- .+++.++++.++ +...| ..+..+.+|.+++-++.+-.-....|-
T Consensus 174 kD~~di~~~l~~g~d~v~~sfV~~a~dv~~~~~~-------------l~~~~~~~~~iiakIE~~eav~nldeIl~~~Dg 240 (587)
T 2e28_A 174 KDRADILFGIRQGIDFIAASFVRRASDVLEIREL-------------LEAHDALHIQIIAKIENEEGVANIDEILEAADG 240 (587)
T ss_dssp HHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHH-------------HHHTTCTTSEEEEEECSHHHHHTHHHHHHHSSE
T ss_pred ccHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 478889999999999999885 345666655544 12234 257789999999988776555445688
Q ss_pred EEEeCCC------Ceeech--hhhhhcccCCCceEEEE-------cC----CHHHHHHHHHHHhcccCeEEEecCC----
Q 024251 136 IVIDLPD------WQVIPA--ENIVASFQGSGKTVFAI-------SK----TPSEAQIFLEALEQGLGGIVLKVED---- 192 (270)
Q Consensus 136 vvv~~~D------WtiIPl--ENlIA~~q~~~~~i~a~-------v~----~~~eA~~~l~~LE~G~DGVvl~~~d---- 192 (270)
++|--.| ..-+|. +.+|+.....+.-++.. ++ +-.|+--...+.--|+|+|+|..+.
T Consensus 241 ImVargDLgvei~~~~v~~~qk~ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAE~sDvanav~dG~DavMLSgETA~G~ 320 (587)
T 2e28_A 241 LMVARGDLGVEIPAEEVPLIQKLLIKKSNMLGKPVITATQMLDSMQRNPRPTRAEASDVANAIFDGTDAVMLSGETAAGQ 320 (587)
T ss_dssp EEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCS
T ss_pred EEEcCchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEechhhHhhccCCCccHHHHhccchhhhhCcceeeecccccCCC
Confidence 8873322 223333 45555554444444442 22 3368888888888999999996543
Q ss_pred -H-HHHHHHHHhhcc
Q 024251 193 -V-KAVLALKEYFDG 205 (270)
Q Consensus 193 -~-~~v~~l~~~~~~ 205 (270)
| +.|+-+.++..+
T Consensus 321 yPveaV~~m~~I~~~ 335 (587)
T 2e28_A 321 YPVEAVKTMHQIALR 335 (587)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 3 345555555533
No 35
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=82.96 E-value=3.9 Score=33.25 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=43.8
Q ss_pred CCceEEEeCCCCeeechhhhhhccc------CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhcc
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ------GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDG 205 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q------~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~~ 205 (270)
..+.||++..-...=-+ .++..+. +....||.......+......+++.|+++++.+|-+ .-...+++++.+
T Consensus 119 ~~dlillD~~lp~~~G~-el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~-~L~~~i~~~l~~ 196 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGY-EATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN-QLANVIREIESK 196 (206)
T ss_dssp SCSEEEEESCCSSSCHH-HHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT-THHHHHHHHC--
T ss_pred CCCEEEEcCCCCCCCHH-HHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH-HHHHHHHHHHhh
Confidence 57888886653332112 2333332 245677777766545556678899999999999988 444445555543
No 36
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=82.82 E-value=4.4 Score=29.40 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=45.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.++++..-... .--.++..+. .....++...... +......+++.|++|++.+|-++
T Consensus 31 ~~~~~~~a~~~~~~-~~~dlii~d~~l~~~-~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~kp~~~ 107 (134)
T 3f6c_A 31 ELTEGGSAVQRVET-LKPDIVIIDVDIPGV-NGIQVLETLRKRQYSGIIIIVSAKN-DHFYGKHCADAGANGFVSKKEGM 107 (134)
T ss_dssp EESSSTTHHHHHHH-HCCSEEEEETTCSSS-CHHHHHHHHHHTTCCSEEEEEECC----CTHHHHHHTTCSEEEEGGGCT
T ss_pred EcCCHHHHHHHHHh-cCCCEEEEecCCCCC-ChHHHHHHHHhcCCCCeEEEEeCCC-ChHHHHHHHHhCCCEEEeCCCCH
Confidence 34554443332222 346888886653332 1122333322 2345566555443 44566788999999999999998
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
+++.+.
T Consensus 108 ~~l~~~ 113 (134)
T 3f6c_A 108 NNIIAA 113 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 37
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=82.67 E-value=1.5 Score=39.41 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=59.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec-ChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~-~~ed~e~~~~~~~~~~~vvv 138 (270)
...+..+.|.|+|++++++-..+...++.+. .+..|.....++.-+ +.+.++.++.... +++-+
T Consensus 113 e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~-------------~~~~gl~~i~liaP~t~~eri~~i~~~~~--gfvY~ 177 (267)
T 3vnd_A 113 DEFYTKAQAAGVDSVLIADVPVEESAPFSKA-------------AKAHGIAPIFIAPPNADADTLKMVSEQGE--GYTYL 177 (267)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHHHH-------------HHHTTCEEECEECTTCCHHHHHHHHHHCC--SCEEE
T ss_pred HHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHhCC--CcEEE
Confidence 5678999999999999986433322222221 122233322222222 3455555554422 23333
Q ss_pred -eC---CCCe--ee-chhhhhhcccCCC-ceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 139 -DL---PDWQ--VI-PAENIVASFQGSG-KTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 139 -~~---~DWt--iI-PlENlIA~~q~~~-~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
.. ++=+ +. +++.+|+.+.... ..|+. .++++++|+ ..++.|+|||++-+
T Consensus 178 vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~---~~~~~gADgvVVGS 236 (267)
T 3vnd_A 178 LSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVR---AAIKAGAAGAISGS 236 (267)
T ss_dssp SCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHH---HHHHTTCSEEEECH
T ss_pred EecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHH---HHHHcCCCEEEECH
Confidence 11 1211 22 3667777765432 22332 356777775 35678999999976
No 38
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=82.55 E-value=1.9 Score=42.82 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=88.6
Q ss_pred hHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 61 QVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 61 e~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
+++.-|+|-|+|.|-+.- .+++.+.++.++ .-+.|....+.+.++.++.+|.+++.++.+..-....|-++|.
T Consensus 220 D~l~fa~~~~vD~ialSFVr~~~Dv~~~r~~------l~~~g~~~~~~~~~i~IiaKIE~~~av~NldeIi~~sDgIMVA 293 (526)
T 4drs_A 220 DIVDFALKYNLDFIALSFVQNGADVQLCRQI------ISENTQYSNGIPSSIKIISKIENLEGVINFDSICSESDGIMVA 293 (526)
T ss_dssp HHHHTTTTTTCSEEEETTCCSHHHHHHHHHH------HHTCCTTTTTCCCCCEEEEEECSHHHHHTHHHHHHHSSEEEEE
T ss_pred HHHHHHHHhccCeeeecccCchhhHHHHHHH------HHhhCcccccccccceeeeehhccHHHHHHHHHHhhccEEEEE
Confidence 467889999999766553 234555555444 1122222222345677888999999988877776778999996
Q ss_pred CCCCee-echhh-------hhhcccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecC-----CH-H
Q 024251 140 LPDWQV-IPAEN-------IVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVE-----DV-K 194 (270)
Q Consensus 140 ~~DWti-IPlEN-------lIA~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~-----d~-~ 194 (270)
-.|--+ ||+|+ ||......+.-+|.. ..+-.|+--...+..-|+|+|+|..+ -| +
T Consensus 294 RGDLgvEip~e~vp~~QK~II~~c~~~gKPVI~ATQmLeSMi~np~PTRAEvsDVAnAV~DGaDavMLSgETA~G~yPve 373 (526)
T 4drs_A 294 RGDLGMEIPPEKIFVAQKCMISKCNVAGKPVVTATQMLESMIKSNRPTRAEMTDVANAVLDGSDCVMLSGETANGAFPFD 373 (526)
T ss_dssp CTTHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESCTTGGGGSSSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCSCHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHHcCCeEEEhhhhhHHHhhCCCCCCchHHHHHHHHHhCCceEEEcchhhcccCHHH
Confidence 666332 55554 455444444445543 34457888899999999999999844 23 4
Q ss_pred HHHHHHHhhc
Q 024251 195 AVLALKEYFD 204 (270)
Q Consensus 195 ~v~~l~~~~~ 204 (270)
.|+-+.+++.
T Consensus 374 aV~~m~~I~~ 383 (526)
T 4drs_A 374 AVNVMSRVCA 383 (526)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555553
No 39
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=82.51 E-value=2.1 Score=37.97 Aligned_cols=137 Identities=11% Similarity=0.026 Sum_probs=76.1
Q ss_pred CcEEEEEe--CchhHHHHHHHhCCcEEEEcCcch--h----hhhhccceeeeeeeeecCCcccc--CCCCeEEEEEEecC
Q 024251 50 PKRVWIWT--ESKQVMTAAVERGWNTFVFLSENQ--Q----LAIDWSTIALLDPLFIKEGEVYD--SGDRRVGSIIEVST 119 (270)
Q Consensus 50 ~K~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~~~--e----~a~~l~~i~~i~~l~~~~g~~~~--~~gk~v~~~v~V~~ 119 (270)
....|+|. .+.+.+..|+.+|+|.++++-||. + +.....++. .. +.+ ++ ..+..+.+++.-.+
T Consensus 7 ~~rs~L~~p~~~~~~~~~a~~~gaD~vilDlEdav~~~~~~k~~Ar~~v~--~~--l~~---~~~~~~~~~~~VRv~~~~ 79 (284)
T 1sgj_A 7 LLRSVLFAPGNRADLIAKLPRSAPDAVVIDLEDAVPGTAEAKAAARPVAH--DA--ARD---LIAAAPHLAVFVRVNALH 79 (284)
T ss_dssp CCSEEEEEETTCHHHHHHTTTTCCSEEEEESSTTSCSSHHHHHHHHHHHH--HH--HHH---HHHHSTTSEEEEECCCTT
T ss_pred CCceEEEccCCCHHHHHHHHhCCCCEEEEECCCCCCCchhhHHHHHHHHH--HH--HHh---cccccCCCeEEEEeCCCC
Confidence 34567766 788999999999999999997652 1 111111110 00 000 01 12344444444222
Q ss_pred -hhhhhhhccccCCCceEEEeCCC--CeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhc-ccCeEEEecCCHH
Q 024251 120 -PQELQQLQPADGQAENIVIDLPD--WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (270)
Q Consensus 120 -~ed~e~~~~~~~~~~~vvv~~~D--WtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~-G~DGVvl~~~d~~ 194 (270)
+...+.+.......+.|++-.-. -++--+..++... +....|++.+.+++-...+-+++.. |+||+.+-+.|..
T Consensus 80 ~~~~~~dl~~~l~g~~~i~lPkv~s~~~v~~~~~~l~~~-g~~~~i~~~IEt~~av~~~~eIa~~~~vd~l~iG~~DL~ 157 (284)
T 1sgj_A 80 SPYFEDDLSVLTPELSGVVVPKLEMGAEARQVAQMLQER-SLPLPILAGLETGAGVWNAREIMEVPEVAWAYFGAEDYT 157 (284)
T ss_dssp STTHHHHGGGCCTTSSEEEECSCCSHHHHHHHHHHHHHT-TCCCCEEEEECSHHHHHTHHHHHTSTTEEEEEECHHHHH
T ss_pred CHhHHHHHHHHhccCCEEEeCCCCCHHHHHHHHHHHHhc-CCCeEEEEEecCHHHHHHHHHHHcCCCCcEEEECHHHHH
Confidence 44222333222245566662211 1111122222222 2356799999999999888888854 8999999988654
No 40
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=82.46 E-value=7 Score=30.10 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=41.6
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCH-HHHHHHHHHHhcccCeEEEecCC
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTP-SEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~-~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
..+.++.-..... ...+.+|++..-... .--.++..+.. ....++...... ++.+....+++.|+++.+.+|-+
T Consensus 57 ~~~~~~al~~l~~-~~~dlvilD~~l~~~-~g~~l~~~lr~~~~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~ 132 (164)
T 3t8y_A 57 AKDGLEAVEKAIE-LKPDVITMDIEMPNL-NGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHG 132 (164)
T ss_dssp ESSHHHHHHHHHH-HCCSEEEECSSCSSS-CHHHHHHHHHHHSCCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSS
T ss_pred cCCHHHHHHHhcc-CCCCEEEEeCCCCCC-CHHHHHHHHHhcCCceEEEEecCCccchHHHHHHHHcCcCEEEeCCCC
Confidence 4555543332222 347888886543221 11222322221 124566555533 34567788999999999999998
No 41
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=82.45 E-value=0.77 Score=45.30 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=85.6
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
+|++-+..|+|.|+|.+.++. .+++.++++.++ +.+.|+.+..+.+|.+++-++.+..-+...|-+
T Consensus 193 kD~~dl~~~~~~~vD~i~~sfVr~a~dv~~~r~~-------------l~~~~~~i~IiaKIE~~eav~nldeIl~~sDgI 259 (499)
T 3hqn_D 193 KDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKA-------------LGPKGRDIMIICKIENHQGVQNIDSIIEESDGI 259 (499)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCCeEEEEECCHHHHHhHHHHHHhCCcE
Confidence 578889999999999988874 234555544443 223345677888999999887765554456888
Q ss_pred EEeCCCCe-eechhhh-------hhcccCCCceEEE-----------EcCCHHHHHHHHHHHhcccCeEEEecCC-----
Q 024251 137 VIDLPDWQ-VIPAENI-------VASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (270)
Q Consensus 137 vv~~~DWt-iIPlENl-------IA~~q~~~~~i~a-----------~v~~~~eA~~~l~~LE~G~DGVvl~~~d----- 192 (270)
+|-..|-- =||+|.+ |.+....+.-++. ...+-.|+--...+.--|+|+|+|..+.
T Consensus 260 mVaRGDLgvEi~~e~vp~~Qk~iI~~c~~agkpVi~ATQmLeSMi~~p~PTRAEvsDVanaV~dG~DavMLSgETA~G~y 339 (499)
T 3hqn_D 260 MVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKY 339 (499)
T ss_dssp EEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSC
T ss_pred EEccccccCcCCHHHHHHHHHHHHHHHHHcCCCeEEeehhHHHhccCCCccHHHHHHHHHHHHcCCcEEEEeccccCCCC
Confidence 88433322 2466653 3333323333443 1235578888889999999999996542
Q ss_pred H-HHHHHHHHhhc
Q 024251 193 V-KAVLALKEYFD 204 (270)
Q Consensus 193 ~-~~v~~l~~~~~ 204 (270)
| +.|+-+.++..
T Consensus 340 PveaV~~m~~I~~ 352 (499)
T 3hqn_D 340 PNEVVQYMARICL 352 (499)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3 44555555553
No 42
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=82.17 E-value=8 Score=28.51 Aligned_cols=86 Identities=9% Similarity=0.094 Sum_probs=49.1
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.++.-..... ...+.+|++..-... .--.++..+.. ....|+...... +......+++.|+++++.+|-
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~D~~l~~~-~g~~~~~~lr~~~~~~~~pii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~ 112 (144)
T 3kht_A 36 FVDNGAKALYQVQQ-AKYDLIILDIGLPIA-NGFEVMSAVRKPGANQHTPIVILTDNV-SDDRAKQCMAAGASSVVDKSS 112 (144)
T ss_dssp EESSHHHHHHHHTT-CCCSEEEECTTCGGG-CHHHHHHHHHSSSTTTTCCEEEEETTC-CHHHHHHHHHTTCSEEEECCT
T ss_pred EECCHHHHHHHhhc-CCCCEEEEeCCCCCC-CHHHHHHHHHhcccccCCCEEEEeCCC-CHHHHHHHHHcCCCEEEECCC
Confidence 44555543332222 346788885443221 12234444433 345666655443 334567788999999999999
Q ss_pred -CHHHHHHH-HHhhc
Q 024251 192 -DVKAVLAL-KEYFD 204 (270)
Q Consensus 192 -d~~~v~~l-~~~~~ 204 (270)
++.++.+. +.+++
T Consensus 113 ~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 113 NNVTDFYGRIYAIFS 127 (144)
T ss_dssp TSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 99876543 33443
No 43
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=82.16 E-value=2.2 Score=39.26 Aligned_cols=42 Identities=10% Similarity=-0.101 Sum_probs=35.9
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
..+|..++.|.+||+.+ ++.|+|.|+|+.-+++++++..+.+
T Consensus 198 ~~~IeVEv~tl~ea~eA---l~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 198 NKVVEVEVTNLDELNQA---IAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp TSCEEEEESSHHHHHHH---HHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHH---HHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 46899999999988755 5679999999999999998877766
No 44
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=82.08 E-value=1.3 Score=44.24 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=85.9
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
.|++-+.-|+|.|+|.+.++. .+++.++++.++ +.+.|+.+..+.+|.+++-++.+..-+...|-+
T Consensus 243 kD~~dl~f~~~~~vD~ia~SfVr~a~Dv~~~r~~-------------L~~~g~~i~IIAKIE~~eav~nldeIl~~sDgI 309 (550)
T 3gr4_A 243 KDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKV-------------LGEKGKNIKIISKIENHEGVRRFDEILEASDGI 309 (550)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCceEEEEeCCHHHHHHHHHHHHhCCEE
Confidence 478889999999999888774 234445444433 334456678899999999887765554456778
Q ss_pred EEeCCCCe-eechhh-------hhhcccCCCceEEEE-------c----CCHHHHHHHHHHHhcccCeEEEecCC-----
Q 024251 137 VIDLPDWQ-VIPAEN-------IVASFQGSGKTVFAI-------S----KTPSEAQIFLEALEQGLGGIVLKVED----- 192 (270)
Q Consensus 137 vv~~~DWt-iIPlEN-------lIA~~q~~~~~i~a~-------v----~~~~eA~~~l~~LE~G~DGVvl~~~d----- 192 (270)
+|-..|-- =||+|. +|.+....+.-++.. + .+-.|+--...+.--|+|+|+|..+.
T Consensus 310 mVaRGDLgvei~~e~vp~~Qk~iI~~c~~agkpVi~ATQMLeSMi~~p~PTRAEvsDVanAvldG~DavMLSgETA~G~y 389 (550)
T 3gr4_A 310 MVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDY 389 (550)
T ss_dssp EEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSC
T ss_pred EEccchhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEehhhHHhhcCCCccHHHHHHHHHHHHcCCcEEEEecCccCCCC
Confidence 87433321 245555 333333333334432 2 34578888899999999999996543
Q ss_pred H-HHHHHHHHhhc
Q 024251 193 V-KAVLALKEYFD 204 (270)
Q Consensus 193 ~-~~v~~l~~~~~ 204 (270)
| +.|+-+.++..
T Consensus 390 PveaV~~M~~I~~ 402 (550)
T 3gr4_A 390 PLEAVRMQHLIAR 402 (550)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3 45655555553
No 45
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=82.02 E-value=5.1 Score=33.66 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=47.1
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc-CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ-GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q-~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
...+.++.-..... ...|.+|++..-...=-+| ++..+. .....|+..... .+......+++.|++|.+.+|-+++
T Consensus 66 ~~~~~~~al~~~~~-~~~DlvllD~~lp~~~G~~-l~~~lr~~~~~~iI~lt~~-~~~~~~~~a~~~Ga~~yl~Kp~~~~ 142 (249)
T 3q9s_A 66 HADSAMNGLIKARE-DHPDLILLDLGLPDFDGGD-VVQRLRKNSALPIIVLTAR-DTVEEKVRLLGLGADDYLIKPFHPD 142 (249)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEECCSCHHHHHH-HHHHHHTTCCCCEEEEESC-CSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHH-HHHHHHcCCCCCEEEEECC-CCHHHHHHHHHCCCcEEEECCCCHH
Confidence 34555543332222 3578888866533321222 233332 234456554443 3445677889999999999999998
Q ss_pred HHHHH
Q 024251 195 AVLAL 199 (270)
Q Consensus 195 ~v~~l 199 (270)
++.+.
T Consensus 143 ~L~~~ 147 (249)
T 3q9s_A 143 ELLAR 147 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 46
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=81.97 E-value=4.5 Score=39.18 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=69.9
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 56 WTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 56 w~~~Ke~vT~ALEsG~d~~vv~~~~~------e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
+.+..+.+.+.+|.|+|.+++...+. +.++++.+. .| +.++. ...|.+.++...+...
T Consensus 254 ~~d~~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~---~~------------~~~vi-~g~v~t~e~a~~~~~a 317 (511)
T 3usb_A 254 TADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAK---YP------------SLNII-AGNVATAEATKALIEA 317 (511)
T ss_dssp STTHHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHH---CT------------TSEEE-EEEECSHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhccceEEecccccchhhhhhHHHHHHHh---CC------------CceEE-eeeeccHHHHHHHHHh
Confidence 44568889999999999999875432 222222211 00 12221 2367788875555543
Q ss_pred cCCCceEEEeC-----------CCC---eeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 130 DGQAENIVIDL-----------PDW---QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 130 ~~~~~~vvv~~-----------~DW---tiIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.++.+++.. .+| ++-.+.++.+.++..+.-||+ .+.++.|+..+ |+.|+|||++-.-
T Consensus 318 --Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~ka---la~GA~~V~vGs~ 390 (511)
T 3usb_A 318 --GANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKA---LAAGAHVVMLGSM 390 (511)
T ss_dssp --TCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHH---HHTTCSEEEESTT
T ss_pred --CCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHH---HHhCchhheecHH
Confidence 577887721 123 233334444444444567887 78999998766 5679999998764
No 47
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=81.92 E-value=0.86 Score=41.50 Aligned_cols=69 Identities=14% Similarity=0.041 Sum_probs=34.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhccc-------c-ccccceeeeEEEEEEEEeccccce
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGR-------N-EVSNLLSLMKATVTRVDVAGMGDR 231 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~~~-------~-~~~~~l~L~~a~Vt~V~~vGmGdR 231 (270)
.+|..++.+++|++.++ +.|+|+|.|++-++++++++++.+... . ..++.+ ..-+|.++...|. |+
T Consensus 200 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~~~~~g~~~v~I~ASGGI--t~~ni~~~~~~Gv-D~ 273 (294)
T 3c2e_A 200 VKIEVECLSEDEATEAI---EAGADVIMLDNFKGDGLKMCAQSLKNKWNGKKHFLLECSGGL--NLDNLEEYLCDDI-DI 273 (294)
T ss_dssp SCEEEECSSSHHHHHHH---HHTCSEEECCC---------------------CCEEEEECCC--CC------CCCSC-SE
T ss_pred CeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhcccccCCCCeEEEEECCC--CHHHHHHHHHcCC-CE
Confidence 58999999999987665 579999999999999888877666421 1 234455 4456677777776 66
Q ss_pred eEE
Q 024251 232 VCV 234 (270)
Q Consensus 232 VCV 234 (270)
+.|
T Consensus 274 i~v 276 (294)
T 3c2e_A 274 YST 276 (294)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
No 48
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=81.83 E-value=6.4 Score=37.82 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=70.2
Q ss_pred eCchhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhcccc
Q 024251 57 TESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~~~~------e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~ 130 (270)
.+..+.+...+|.|+|.+.+...+. +.++++.+. .| +.++.. ..+.+.++...+..
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~---~p------------~~~Vi~-g~v~t~e~a~~l~~-- 289 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQT---FP------------DVQVIG-GNIATAEAAKALAE-- 289 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHH---CT------------TSEEEE-EEECSHHHHHHHHH--
T ss_pred cchHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHH---CC------------CceEEE-eeeCcHHHHHHHHH--
Confidence 3567899999999999998864321 222222221 00 222222 35788887655554
Q ss_pred CCCceEEEeCC-----------CC---eeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 131 GQAENIVIDLP-----------DW---QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 131 ~~~~~vvv~~~-----------DW---tiIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..++.+++-.. +| ++--+.++...+...+..||+ .+.+++|+..++ +.|+|||++-+-
T Consensus 290 aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal---~~GAd~V~vGs~ 363 (490)
T 4avf_A 290 AGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAM---VAGAYCVMMGSM 363 (490)
T ss_dssp TTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHH---HHTCSEEEECTT
T ss_pred cCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHH---HcCCCeeeecHH
Confidence 46888888322 22 222234445444444667898 789999988776 459999998764
No 49
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=81.78 E-value=3.7 Score=39.58 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=70.9
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 56 WTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 56 w~~~Ke~vT~ALEsG~d~~vv~~~~~------e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
+.+..+.+...+|.|+|.+.+...+. +.++++.+- .| +..+.. ..+.+.++...+..
T Consensus 229 ~~d~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~---~p------------~~~Vi~-g~v~t~e~a~~l~~- 291 (496)
T 4fxs_A 229 APGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAA---YP------------HLEIIG-GNVATAEGARALIE- 291 (496)
T ss_dssp SSCCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHH---CT------------TCCEEE-EEECSHHHHHHHHH-
T ss_pred ccchHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHH---CC------------CceEEE-cccCcHHHHHHHHH-
Confidence 45678999999999999999875431 222222211 00 222222 35778877665554
Q ss_pred cCCCceEEEeCC--------------CCeeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 130 DGQAENIVIDLP--------------DWQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 130 ~~~~~~vvv~~~--------------DWtiIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..++.+++... .++.-.+.++...+...+..||+ .+.+++|+..++ +.|+|||++-+-
T Consensus 292 -aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kal---a~GAd~V~iGs~ 365 (496)
T 4fxs_A 292 -AGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAI---AAGASCVMVGSM 365 (496)
T ss_dssp -HTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred -hCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHH---HcCCCeEEecHH
Confidence 35788887411 12223334455444444567888 689999988765 569999998764
No 50
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=81.58 E-value=2.2 Score=39.59 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=36.5
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
..+|..+|.|.+|++.++ +.|+|.|+|+.=+++++++..+.+.
T Consensus 207 ~~kIeVEv~tl~e~~eAl---~aGaDiImLDn~s~~~l~~av~~~~ 249 (300)
T 3l0g_A 207 NEYIAIECDNISQVEESL---SNNVDMILLDNMSISEIKKAVDIVN 249 (300)
T ss_dssp SCCEEEEESSHHHHHHHH---HTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred CCCEEEEECCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHhhc
Confidence 468999999999987655 5699999999999999988777663
No 51
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=81.43 E-value=1.7 Score=38.24 Aligned_cols=113 Identities=8% Similarity=0.074 Sum_probs=58.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEe-cChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V-~~~ed~e~~~~~~~~~~~vvv 138 (270)
.+.+..+.+.|+|++++++...+...++-+. +++.|.+....+.- ++.+.++.++.... +++.+
T Consensus 112 ~~~~~~~~~aGadgii~~d~~~e~~~~~~~~-------------~~~~g~~~i~l~~p~t~~~~i~~i~~~~~--g~v~~ 176 (268)
T 1qop_A 112 DAFYARCEQVGVDSVLVADVPVEESAPFRQA-------------ALRHNIAPIFICPPNADDDLLRQVASYGR--GYTYL 176 (268)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGCHHHHHH-------------HHHTTCEEECEECTTCCHHHHHHHHHHCC--SCEEE
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHH-------------HHHcCCcEEEEECCCCCHHHHHHHHhhCC--CcEEE
Confidence 5788899999999999987543222222111 12223332222222 33455555554432 23433
Q ss_pred e----CCCC---eeechhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 139 D----LPDW---QVIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 139 ~----~~DW---tiIPlENlIA~~q~~-~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
. +++- ..-++..+|+.+.+. +..|++ .+++++.++. +++.|+|||++-+
T Consensus 177 ~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~---~~~agAD~vVVGS 235 (268)
T 1qop_A 177 LSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSA---AVRAGAAGAISGS 235 (268)
T ss_dssp ESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHH---HHHTTCSEEEECH
T ss_pred EecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHH---HHHcCCCEEEECh
Confidence 2 1121 123345566655432 223433 3566776654 4678999999864
No 52
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=81.32 E-value=7.5 Score=28.45 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=43.3
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.+|++..-.. ..--.++..+.. ....++...... +......+++.|++|++.+|-++.++.+.
T Consensus 58 ~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~kP~~~~~L~~~ 128 (143)
T 2qvg_A 58 IHPKLILLDINIPK-MNGIEFLKELRDDSSFTDIEVFVLTAAY-TSKDKLAFESLNIRGHLIKPLDYGEAIKL 128 (143)
T ss_dssp CCCSEEEEETTCTT-SCHHHHHHHHTTSGGGTTCEEEEEESCC-CHHHHHHHTTTTCCEEEESSCCHHHHHHH
T ss_pred CCCCEEEEecCCCC-CCHHHHHHHHHcCccccCCcEEEEeCCC-CHHHHHHHHhcCCCeEEECCCCHHHHHHH
Confidence 34678888665332 222234444443 345666665544 35566788999999999999999977654
No 53
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=81.22 E-value=13 Score=26.68 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=50.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHH----HHHHHHHHhcccCeEEEe
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSE----AQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~e----A~~~l~~LE~G~DGVvl~ 189 (270)
...+.++....... . .+.+|++..-.. ..--.++..+. .....++......++ ++.....++.|+++.+.+
T Consensus 32 ~~~~~~~~~~~~~~-~-~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~K 108 (135)
T 3eqz_A 32 AFQHPRAFLTLSLN-K-QDIIILDLMMPD-MDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTK 108 (135)
T ss_dssp EESCHHHHTTSCCC-T-TEEEEEECCTTT-THHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred eecCHHHHHHhhcc-C-CCEEEEeCCCCC-CCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCC
Confidence 34666654443332 2 677888654322 11122333322 234567776666654 577888999999999999
Q ss_pred cCCHHHHHHHH
Q 024251 190 VEDVKAVLALK 200 (270)
Q Consensus 190 ~~d~~~v~~l~ 200 (270)
|-++.++.+.-
T Consensus 109 P~~~~~l~~~l 119 (135)
T 3eqz_A 109 PINTEVLTCFL 119 (135)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99998766543
No 54
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=80.93 E-value=9.9 Score=27.56 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=47.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCe----eechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQ----VIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWt----iIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
...+.++....... ...+.+|++..-.. -..-..++..+. .....|+...... +......+++.|++|++.+
T Consensus 32 ~~~~~~~a~~~l~~-~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~k 109 (140)
T 2qr3_A 32 TLSSPVSLSTVLRE-ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYA-DIDLAVRGIKEGASDFVVK 109 (140)
T ss_dssp EECCHHHHHHHHHH-SCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGG-GHHHHHHHHHTTCCEEEEE
T ss_pred EeCCHHHHHHHHHc-CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCC-CHHHHHHHHHcCchheeeC
Confidence 34565553333322 34678888654320 122223333332 2345666655443 4556778899999999999
Q ss_pred cCCHHHHHHH
Q 024251 190 VEDVKAVLAL 199 (270)
Q Consensus 190 ~~d~~~v~~l 199 (270)
|-++.++.+.
T Consensus 110 p~~~~~l~~~ 119 (140)
T 2qr3_A 110 PWDNQKLLET 119 (140)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999876543
No 55
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=80.89 E-value=7.6 Score=31.11 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=47.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-... ...+.++++..-...=-+ .++..+. .....++......+ ......+++.|++|++.+|-++
T Consensus 30 ~~~~~~~al~~~---~~~dlvllD~~lp~~~g~-~~~~~lr~~~~~~~ii~lt~~~~-~~~~~~~~~~ga~~~l~Kp~~~ 104 (220)
T 1p2f_A 30 TFLTGEDFLNDE---EAFHVVVLDVMLPDYSGY-EICRMIKETRPETWVILLTLLSD-DESVLKGFEAGADDYVTKPFNP 104 (220)
T ss_dssp EESSHHHHHHCC---SCCSEEEEESBCSSSBHH-HHHHHHHHHCTTSEEEEEESCCS-HHHHHHHHHHTCSEEEESSCCH
T ss_pred EECCHHHHHHhc---CCCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCcEEEEEcCCC-HHHHHHHHHcCCCEEEECCCCH
Confidence 345555433322 567888886553332122 2333332 23556666655443 3456788999999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 105 ~~L~~~ 110 (220)
T 1p2f_A 105 EILLAR 110 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876553
No 56
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=80.67 E-value=12 Score=27.96 Aligned_cols=81 Identities=9% Similarity=0.075 Sum_probs=47.6
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.+|++..-.. ..--.++..+. .....|+...... +......+++.|++|++.+|-++
T Consensus 32 ~~~~~~~a~~~l~~-~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~ls~~~-~~~~~~~~~~~g~~~~l~kP~~~ 108 (155)
T 1qkk_A 32 SFASATEALAGLSA-DFAGIVISDIRMPG-MDGLALFRKILALDPDLPMILVTGHG-DIPMAVQAIQDGAYDFIAKPFAA 108 (155)
T ss_dssp EESCHHHHHHTCCT-TCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEEEECGG-GHHHHHHHHHTTCCEEEESSCCH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEEEECCC-ChHHHHHHHhcCCCeEEeCCCCH
Confidence 34555543333222 34688888655332 22222333322 2345666665543 45566788999999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++...
T Consensus 109 ~~L~~~ 114 (155)
T 1qkk_A 109 DRLVQS 114 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 57
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=80.66 E-value=6.6 Score=31.99 Aligned_cols=116 Identities=21% Similarity=0.194 Sum_probs=60.6
Q ss_pred hHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 61 QVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 61 e~vT~ALEsG~d~~vv~~~~--~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
+-+..|++.|+|.+.++..+ .+.++++. .+..++ +.+.++++...+.. ...+++++
T Consensus 77 ~~~~~a~~~gad~v~l~~~~~~~~~~~~~~------------------~~~~~~--v~~~t~~e~~~~~~--~g~d~i~~ 134 (215)
T 1xi3_A 77 DRVDVALAVDADGVQLGPEDMPIEVAKEIA------------------PNLIIG--ASVYSLEEALEAEK--KGADYLGA 134 (215)
T ss_dssp SCHHHHHHHTCSEEEECTTSCCHHHHHHHC------------------TTSEEE--EEESSHHHHHHHHH--HTCSEEEE
T ss_pred ChHHHHHHcCCCEEEECCccCCHHHHHHhC------------------CCCEEE--EecCCHHHHHHHHh--cCCCEEEE
Confidence 34467888888888876422 22333221 122222 34577777554332 35889988
Q ss_pred eCCCC-------eeechhhhhhccc-CCCceEEEE--cCCHHHHHHHHHHHhcccCeEEEec-----CCH-HHHHHHHHh
Q 024251 139 DLPDW-------QVIPAENIVASFQ-GSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV-----EDV-KAVLALKEY 202 (270)
Q Consensus 139 ~~~DW-------tiIPlENlIA~~q-~~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~-~~v~~l~~~ 202 (270)
..--. ....++. +.++. ..+..+++. ++ ++.++. +++.|+|||++-+ +|+ ..++++++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~-l~~l~~~~~~pvia~GGI~-~~nv~~---~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~ 209 (215)
T 1xi3_A 135 GSVFPTKTKEDARVIGLEG-LRKIVESVKIPVVAIGGIN-KDNARE---VLKTGVDGIAVISAVMGAEDVRKATEELRKI 209 (215)
T ss_dssp ECSSCC----CCCCCHHHH-HHHHHHHCSSCEEEESSCC-TTTHHH---HHTTTCSEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred cCCccCCCCCCCCCcCHHH-HHHHHHhCCCCEEEECCcC-HHHHHH---HHHcCCCEEEEhHHHhCCCCHHHHHHHHHHH
Confidence 53111 1122222 22221 113345543 44 666554 4568999998764 466 366666655
Q ss_pred h
Q 024251 203 F 203 (270)
Q Consensus 203 ~ 203 (270)
+
T Consensus 210 ~ 210 (215)
T 1xi3_A 210 V 210 (215)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=80.63 E-value=4.6 Score=36.08 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=65.7
Q ss_pred CchhHHHHHHHhCCcEEEEcCc--ch-hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec----Ch---hhhhhhc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE--NQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS----TP---QELQQLQ 127 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~--~~-e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~----~~---ed~e~~~ 127 (270)
.+.+++.++-+.|.-+++.... +. +..+.+.++.... ++++++-+-+. .+ +.++.+.
T Consensus 27 s~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~-------------~~p~~v~l~v~~~~~~~~~~~~~~~~~ 93 (328)
T 2gjl_A 27 GRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELT-------------DRPFGVNLTLLPTQKPVPYAEYRAAII 93 (328)
T ss_dssp CSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHC-------------SSCCEEEEEECCCSSCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhc-------------CCCeEEEEeccccccCccHHHHHHHHH
Confidence 3578899999999888886521 12 1212222221100 11222333332 12 2222222
Q ss_pred cccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 128 PADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 128 ~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
. .+.+.|.+.+.+ | ..++..+...+.+++..+.+.++|+. ..+.|+|+|++..
T Consensus 94 ~--~g~d~V~~~~g~----p-~~~~~~l~~~gi~vi~~v~t~~~a~~---~~~~GaD~i~v~g 146 (328)
T 2gjl_A 94 E--AGIRVVETAGND----P-GEHIAEFRRHGVKVIHKCTAVRHALK---AERLGVDAVSIDG 146 (328)
T ss_dssp H--TTCCEEEEEESC----C-HHHHHHHHHTTCEEEEEESSHHHHHH---HHHTTCSEEEEEC
T ss_pred h--cCCCEEEEcCCC----c-HHHHHHHHHcCCCEEeeCCCHHHHHH---HHHcCCCEEEEEC
Confidence 2 357888887765 4 46677776667899999999999875 5678999999954
No 59
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=80.56 E-value=2.6 Score=37.68 Aligned_cols=114 Identities=9% Similarity=-0.021 Sum_probs=57.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEe-cChhhhhhhccccCCCceEE-
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV- 137 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V-~~~ed~e~~~~~~~~~~~vv- 137 (270)
...+..+.|.|+|++++++-..+...++.+.. +..|.....++.- ++.+.++.++.......|++
T Consensus 109 ~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~-------------~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs 175 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPDLPPDEDPGLVRLA-------------QEIGLETVFLLAPTSTDARIATVVRHATGFVYAVS 175 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH-------------HHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEEC
T ss_pred HHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH-------------HHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 56678899999999998853222222221110 0111111111111 34555556555533333333
Q ss_pred ---EeCCCCe-eechhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 138 ---IDLPDWQ-VIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 138 ---v~~~DWt-iIPlENlIA~~q~~-~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+.+.+-. --|++.+++.+... +..|++ .++++++|+.+ .|+|||++-+-
T Consensus 176 ~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~-----~~ADgVIVGSA 231 (271)
T 1ujp_A 176 VTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA-----AVADGVVVGSA 231 (271)
T ss_dssp C------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH-----TTSSEEEECHH
T ss_pred cCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh-----cCCCEEEEChH
Confidence 2122211 23566666666543 334544 46889999874 89999998654
No 60
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=80.55 E-value=2.9 Score=38.21 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=35.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 161 ~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
+|..++.+.+|++.+ ++.|+|+|.|++-++++++++++.+.
T Consensus 210 kI~vev~tlee~~eA---~~aGaD~I~ld~~~~e~l~~~v~~~~ 250 (296)
T 1qap_A 210 PVEVEVENLDELDDA---LKAGADIIMLDNFNTDQMREAVKRVN 250 (296)
T ss_dssp CEEEEESSHHHHHHH---HHTTCSEEEESSCCHHHHHHHHHTTC
T ss_pred cEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhC
Confidence 899999999997776 57799999999999999988887663
No 61
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=80.54 E-value=8.6 Score=29.06 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.++.-..... ...+.+|++..-... .--.++..+.. ....|+...... +......+++.|+++++.+|-
T Consensus 36 ~~~~~~~al~~l~~-~~~dlii~D~~l~~~-~g~~~~~~lr~~~~~~~~pii~~s~~~-~~~~~~~~~~~g~~~~l~KP~ 112 (154)
T 3gt7_A 36 HVRNGREAVRFLSL-TRPDLIISDVLMPEM-DGYALCRWLKGQPDLRTIPVILLTILS-DPRDVVRSLECGADDFITKPC 112 (154)
T ss_dssp EESSHHHHHHHHTT-CCCSEEEEESCCSSS-CHHHHHHHHHHSTTTTTSCEEEEECCC-SHHHHHHHHHHCCSEEEESSC
T ss_pred EeCCHHHHHHHHHh-CCCCEEEEeCCCCCC-CHHHHHHHHHhCCCcCCCCEEEEECCC-ChHHHHHHHHCCCCEEEeCCC
Confidence 34555543333222 357888887653321 11223333322 344566655433 334566788999999999999
Q ss_pred CHHHHHH-HHHhhcc
Q 024251 192 DVKAVLA-LKEYFDG 205 (270)
Q Consensus 192 d~~~v~~-l~~~~~~ 205 (270)
++.++.+ ++.++.+
T Consensus 113 ~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 113 KDVVLASHVKRLLSG 127 (154)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 9987654 3444433
No 62
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=80.51 E-value=3.1 Score=37.94 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=36.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
.+|..+|.|.+||+.+ ++.|+|.|+|++-+++++++..+.+.
T Consensus 194 ~~I~VEV~tleea~eA---~~aGaD~I~LDn~~~e~l~~av~~l~ 235 (285)
T 1o4u_A 194 TKIEVEVENLEDALRA---VEAGADIVMLDNLSPEEVKDISRRIK 235 (285)
T ss_dssp SCEEEEESSHHHHHHH---HHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 5799999999998876 56899999999999999988877763
No 63
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=80.29 E-value=3.4 Score=36.45 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=61.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcch---------------hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhh
Q 024251 60 KQVMTAAVERGWNTFVFLSENQ---------------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~---------------e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e 124 (270)
.+.+..||+.|++.|.+...+. ++++++..+.. ..| +.+-|.+.-++
T Consensus 46 ~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~-------------~~~----~~liInd~~~l- 107 (243)
T 3o63_A 46 AQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAH-------------RYG----ALFAVNDRADI- 107 (243)
T ss_dssp HHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHH-------------HTT----CEEEEESCHHH-
T ss_pred HHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHH-------------hhC----CEEEEeCHHHH-
Confidence 6789999999999999876431 12222322211 112 33445555543
Q ss_pred hhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 125 QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
+.. ..++-|-+...|- |.+.+-.. .+.+..|-..+.|++|++.+ .+.|+|-|.+.|
T Consensus 108 --A~~-~gAdGVHLg~~dl---~~~~~r~~-~~~~~~iG~S~ht~~Ea~~A---~~~GaDyI~vgp 163 (243)
T 3o63_A 108 --ARA-AGADVLHLGQRDL---PVNVARQI-LAPDTLIGRSTHDPDQVAAA---AAGDADYFCVGP 163 (243)
T ss_dssp --HHH-HTCSEEEECTTSS---CHHHHHHH-SCTTCEEEEEECSHHHHHHH---HHSSCSEEEECC
T ss_pred --HHH-hCCCEEEecCCcC---CHHHHHHh-hCCCCEEEEeCCCHHHHHHH---hhCCCCEEEEcC
Confidence 222 2356677755554 44443332 23455677889999997654 568999999955
No 64
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=80.03 E-value=2.1 Score=42.04 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=54.4
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEE
Q 024251 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
.+++.+..+++.|+|+++++. |.+++|++++..
T Consensus 194 ~D~~DI~~~l~~g~d~I~lpf--------------------------------------V~saeDv~~~~~--------- 226 (500)
T 1a3w_A 194 KDKEDLRFGVKNGVHMVFASF--------------------------------------IRTANDVLTIRE--------- 226 (500)
T ss_dssp HHHHHHHHHHHHTCSEEEECS--------------------------------------CCSHHHHHHHHH---------
T ss_pred hHHHHHHHHHHcCCCEEEECC--------------------------------------CCCHHHHHHHHH---------
Confidence 467778888899999888765 245566555542
Q ss_pred EeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 138 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 138 v~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
++++.. .+..|++.+.+++-.+-+-++++. +|||++.+.|.+
T Consensus 227 -------------~l~~~~-~~i~IiakIEt~eav~nldeI~~~-~DgImvgrgDLg 268 (500)
T 1a3w_A 227 -------------VLGEQG-KDVKIIVKIENQQGVNNFDEILKV-TDGVMVARGDLG 268 (500)
T ss_dssp -------------HHHHHH-TTSEEEEEECSSHHHHSHHHHHHH-SSEEEECHHHHH
T ss_pred -------------HHHhcC-CCcEEEEEECChHHHHhHHHHHHh-CCEEEECchHhh
Confidence 233332 357889999998888888888887 899999988753
No 65
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=80.01 E-value=8.1 Score=30.85 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=49.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.++++..-...=-+ .++..+. .....|+...... +......+++.|++|++.+|-++
T Consensus 31 ~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~-~~~~~lr~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~Kp~~~ 107 (225)
T 1kgs_A 31 VCYDGEEGMYMALN-EPFDVVILDIMLPVHDGW-EILKSMRESGVNTPVLMLTALS-DVEYRVKGLNMGADDYLPKPFDL 107 (225)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESCCSSSCHH-HHHHHHHHTTCCCCEEEEESSC-HHHHHHHTCCCCCSEEEESSCCH
T ss_pred EECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCEEEEeCCC-CHHHHHHHHhCCccEEEeCCCCH
Confidence 34555543332222 357888887654432222 2333332 2345666655443 45667789999999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 108 ~~l~~~ 113 (225)
T 1kgs_A 108 RELIAR 113 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 66
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=79.68 E-value=5.8 Score=35.14 Aligned_cols=118 Identities=16% Similarity=0.103 Sum_probs=73.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch---hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~~---e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
+-.++..++++.|+..+=++-.+. +..+++.+- + | +..+|. ..|.+.++.+.+... .++
T Consensus 47 ~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~--~-~------------~~~iGa-GTVlt~~~a~~Ai~A--GA~ 108 (232)
T 4e38_A 47 DIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQA--Q-P------------EMLIGA-GTILNGEQALAAKEA--GAT 108 (232)
T ss_dssp GHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHH--C-T------------TCEEEE-ECCCSHHHHHHHHHH--TCS
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHh--C-C------------CCEEeE-CCcCCHHHHHHHHHc--CCC
Confidence 357788888999999887764322 222222211 0 0 122222 246788887776654 567
Q ss_pred eEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH----HHHHHHHHh
Q 024251 135 NIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV----KAVLALKEY 202 (270)
Q Consensus 135 ~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~----~~v~~l~~~ 202 (270)
+++.-..| +.++...+..+..++..+.|++|+..+ ++.|+|-|=+-|-.+ +-+++++..
T Consensus 109 fIvsP~~~------~~vi~~~~~~gi~~ipGv~TptEi~~A---~~~Gad~vK~FPa~~~gG~~~lkal~~p 171 (232)
T 4e38_A 109 FVVSPGFN------PNTVRACQEIGIDIVPGVNNPSTVEAA---LEMGLTTLKFFPAEASGGISMVKSLVGP 171 (232)
T ss_dssp EEECSSCC------HHHHHHHHHHTCEEECEECSHHHHHHH---HHTTCCEEEECSTTTTTHHHHHHHHHTT
T ss_pred EEEeCCCC------HHHHHHHHHcCCCEEcCCCCHHHHHHH---HHcCCCEEEECcCccccCHHHHHHHHHH
Confidence 77764433 334444445567888999999998766 789999999988643 344444443
No 67
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=79.67 E-value=12 Score=26.94 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=44.9
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCC----CceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS----GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~----~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.++.-..... ...+.+|++..-... .--.++..+... ...|+.......+ ....+++.|+++++.+|-
T Consensus 35 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~~~~~~~--~~~~~~~~g~~~~l~kP~ 110 (132)
T 3lte_A 35 IAHNGFDAGIKLST-FEPAIMTLDLSMPKL-DGLDVIRSLRQNKVANQPKILVVSGLDKA--KLQQAVTEGADDYLEKPF 110 (132)
T ss_dssp EESSHHHHHHHHHH-TCCSEEEEESCBTTB-CHHHHHHHHHTTTCSSCCEEEEECCSCSH--HHHHHHHHTCCEEECSSC
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEecCCCCC-CHHHHHHHHHhcCccCCCeEEEEeCCChH--HHHHHHHhChHHHhhCCC
Confidence 34555543332222 356888886553321 122334443322 2344444443333 567889999999999999
Q ss_pred CHHHHHH
Q 024251 192 DVKAVLA 198 (270)
Q Consensus 192 d~~~v~~ 198 (270)
++.++.+
T Consensus 111 ~~~~l~~ 117 (132)
T 3lte_A 111 DNDALLD 117 (132)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9987654
No 68
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=79.54 E-value=11 Score=28.21 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=46.9
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcc-cCeEEEecCC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVED 192 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G-~DGVvl~~~d 192 (270)
...+.++.-.........+.++++..-...=.+| ++..+. .....|+.... ..+......+++.| ++|++.+|-+
T Consensus 32 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~-~~~~l~~~~~~~~ii~~s~-~~~~~~~~~~~~~g~~~~~l~KP~~ 109 (151)
T 3kcn_A 32 TCESGPEALACIKKSDPFSVIMVDMRMPGMEGTE-VIQKARLISPNSVYLMLTG-NQDLTTAMEAVNEGQVFRFLNKPCQ 109 (151)
T ss_dssp EESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHH-HHHHHHHHCSSCEEEEEEC-GGGHHHHHHHHHHTCCSEEEESSCC
T ss_pred EeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHH-HHHHHHhcCCCcEEEEEEC-CCCHHHHHHHHHcCCeeEEEcCCCC
Confidence 3455554333332222248888866533322222 222222 23445555444 44556778899999 9999999999
Q ss_pred HHHHHHH
Q 024251 193 VKAVLAL 199 (270)
Q Consensus 193 ~~~v~~l 199 (270)
+.++.+.
T Consensus 110 ~~~L~~~ 116 (151)
T 3kcn_A 110 MSDIKAA 116 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876543
No 69
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=79.48 E-value=7.5 Score=28.55 Aligned_cols=82 Identities=6% Similarity=0.027 Sum_probs=44.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCee-echhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQV-IPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWti-IPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
...+.++.-..... ...+.++++..-..- ..--.++..+.. ....|+...... +......+++.|+++++.+|-+
T Consensus 35 ~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~ 112 (136)
T 3kto_A 35 CFASAESFMRQQIS-DDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSS-DIPTAVRAMRASAADFIEKPFI 112 (136)
T ss_dssp EESSHHHHTTSCCC-TTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSC-CHHHHHHHHHTTCSEEEESSBC
T ss_pred EeCCHHHHHHHHhc-cCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCC-CHHHHHHHHHcChHHheeCCCC
Confidence 34555543222221 235677775442220 111123333322 244565554433 3445677889999999999999
Q ss_pred HHHHHHH
Q 024251 193 VKAVLAL 199 (270)
Q Consensus 193 ~~~v~~l 199 (270)
+.++.+.
T Consensus 113 ~~~l~~~ 119 (136)
T 3kto_A 113 EHVLVHD 119 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876543
No 70
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=79.46 E-value=9.1 Score=27.83 Aligned_cols=66 Identities=11% Similarity=0.145 Sum_probs=39.9
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-+..=-+ .++..+.. ....|+......+ ......+++.|++|.+.+|-+++++.+.
T Consensus 51 ~~dlvi~D~~~p~~~g~-~~~~~lr~~~~~~~~pii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~~L~~~ 120 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNGL-DLVKKVRSDSRFKEIPIIMITAEGG-KAEVITALKAGVNNYIVKPFTPQVLKEK 120 (129)
T ss_dssp TCCEEEECSCCSSSCHH-HHHHHHHTSTTCTTCCEEEEESCCS-HHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCCeEEEEeCCCC-hHHHHHHHHcCccEEEeCCCCHHHHHHH
Confidence 46777775443222112 23343332 2445666555443 3456678999999999999999876543
No 71
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=79.33 E-value=14 Score=27.33 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=45.7
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... .+.+.++++..-... .--.++..+. .....|+...... +......+++.|++|.+.+|-++
T Consensus 33 ~~~~~~~a~~~l~~-~~~dlvllD~~l~~~-~g~~l~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~~ 109 (137)
T 3cfy_A 33 HVETGRDAIQFIER-SKPQLIILDLKLPDM-SGEDVLDWINQNDIPTSVIIATAHG-SVDLAVNLIQKGAEDFLEKPINA 109 (137)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSBCSSS-BHHHHHHHHHHTTCCCEEEEEESSC-CHHHHHHHHHTTCSEEEESSCCH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEecCCCCC-CHHHHHHHHHhcCCCCCEEEEEecC-cHHHHHHHHHCCccEEEeCCCCH
Confidence 34555543332222 356888885442221 1122333332 2344565554433 34566788999999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++...
T Consensus 110 ~~L~~~ 115 (137)
T 3cfy_A 110 DRLKTS 115 (137)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 72
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=79.23 E-value=6.9 Score=28.57 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=26.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 161 ~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
.|+...... +......+++.|++|.+.+|-++.++.+.
T Consensus 85 ~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 122 (136)
T 1dcf_A 85 LLVALSGNT-DKSTKEKCMSFGLDGVLLKPVSLDNIRDV 122 (136)
T ss_dssp EEEEEESCC-SHHHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred eEEEEeCCC-CHHHHHHHHHcCCCeEEECCCCHHHHHHH
Confidence 454444333 33455678899999999999999877543
No 73
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=79.16 E-value=11 Score=30.76 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=57.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~ 132 (270)
-.+.+..+++.|++.+-+...+ .+.++++.++. +.-| +..++. ++.+.+.. ..
T Consensus 28 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~-------------~~~~--v~v~v~----~~~~~a~~--~g 86 (215)
T 1xi3_A 28 EVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLT-------------REYD--ALFFVD----DRVDVALA--VD 86 (215)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHH-------------HHTT--CEEEEE----SCHHHHHH--HT
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH-------------HHcC--CeEEEc----ChHHHHHH--cC
Confidence 3688999999999998775321 12222222221 0111 222221 33333322 25
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
.+.+.+...|. |.+.+ ..+. .+..+...+.+++|++. +.+.|+|.|++.+
T Consensus 87 ad~v~l~~~~~---~~~~~-~~~~-~~~~~~v~~~t~~e~~~---~~~~g~d~i~~~~ 136 (215)
T 1xi3_A 87 ADGVQLGPEDM---PIEVA-KEIA-PNLIIGASVYSLEEALE---AEKKGADYLGAGS 136 (215)
T ss_dssp CSEEEECTTSC---CHHHH-HHHC-TTSEEEEEESSHHHHHH---HHHHTCSEEEEEC
T ss_pred CCEEEECCccC---CHHHH-HHhC-CCCEEEEecCCHHHHHH---HHhcCCCEEEEcC
Confidence 67888865553 34433 3332 33456666889998764 5678999999854
No 74
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=79.07 E-value=16 Score=26.52 Aligned_cols=67 Identities=16% Similarity=0.080 Sum_probs=41.4
Q ss_pred CCCceEEEeCCCCeeechhhhhhccc------CCCceEEEEcCCHHHHHHHHHHHhcc-cCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQ------GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q------~~~~~i~a~v~~~~eA~~~l~~LE~G-~DGVvl~~~d~~~v~~l 199 (270)
...+.+|++..-... .--.++..+. .....++...... +......+++.| +++++.+|-+++++.+.
T Consensus 59 ~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~~~~~ii~~t~~~-~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~ 132 (146)
T 3ilh_A 59 RWPSIICIDINMPGI-NGWELIDLFKQHFQPMKNKSIVCLLSSSL-DPRDQAKAEASDWVDYYVSKPLTANALNNL 132 (146)
T ss_dssp CCCSEEEEESSCSSS-CHHHHHHHHHHHCGGGTTTCEEEEECSSC-CHHHHHHHHHCSSCCEEECSSCCHHHHHHH
T ss_pred CCCCEEEEcCCCCCC-CHHHHHHHHHHhhhhccCCCeEEEEeCCC-ChHHHHHHHhcCCcceeeeCCCCHHHHHHH
Confidence 457888886653322 2222333332 2345566555443 344566889999 99999999999876543
No 75
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=79.02 E-value=15 Score=30.58 Aligned_cols=98 Identities=7% Similarity=-0.017 Sum_probs=56.4
Q ss_pred HHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 63 MTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 63 vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
+..+++.|++.+.++..+ .+.++++.+... + -+ ..+ |. ++.+.+.. ...+.|
T Consensus 35 ~~~~~~~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~--~-----------~~---~l~--v~--~~~~~a~~--~gad~v 92 (221)
T 1yad_A 35 IIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGI--D-----------KR---KLV--MN--GRVDIALF--STIHRV 92 (221)
T ss_dssp HHHHHGGGCSEEEECCTTSCHHHHHHHHHHHHHTTC--C-----------GG---GEE--EE--SCHHHHHT--TTCCEE
T ss_pred HHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHhcC--c-----------CC---eEE--Ee--ChHHHHHH--cCCCEE
Confidence 788999999988776422 233333332210 0 00 122 22 22233222 356777
Q ss_pred EEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 137 vv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
-+...+ .|.+.+-... . +..+...+.|++|++. +.+.|+|.|++.+
T Consensus 93 ~l~~~~---~~~~~~~~~~-~-~~~ig~sv~t~~~~~~---a~~~gaD~i~~~~ 138 (221)
T 1yad_A 93 QLPSGS---FSPKQIRARF-P-HLHIGRSVHSLEEAVQ---AEKEDADYVLFGH 138 (221)
T ss_dssp EECTTS---CCHHHHHHHC-T-TCEEEEEECSHHHHHH---HHHTTCSEEEEEC
T ss_pred EeCCCc---cCHHHHHHHC-C-CCEEEEEcCCHHHHHH---HHhCCCCEEEECC
Confidence 776554 3555554433 2 5567778899998765 4578999999966
No 76
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=78.86 E-value=14 Score=27.69 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=48.1
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcc-cCeEEEecCC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVED 192 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G-~DGVvl~~~d 192 (270)
...+.++.-..... ...+.+|++..-...=.+ .++..+. .....|+...... +......+++.| +++++.+|-+
T Consensus 43 ~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~-~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~~l~KP~~ 119 (153)
T 3hv2_A 43 FARDATQALQLLAS-REVDLVISAAHLPQMDGP-TLLARIHQQYPSTTRILLTGDP-DLKLIAKAINEGEIYRYLSKPWD 119 (153)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESCCSSSCHH-HHHHHHHHHCTTSEEEEECCCC-CHHHHHHHHHTTCCSEEECSSCC
T ss_pred EECCHHHHHHHHHc-CCCCEEEEeCCCCcCcHH-HHHHHHHhHCCCCeEEEEECCC-CHHHHHHHHhCCCcceEEeCCCC
Confidence 34565543333222 357888886653332222 2232222 2355676655543 445667889999 9999999999
Q ss_pred HHHHHHH
Q 024251 193 VKAVLAL 199 (270)
Q Consensus 193 ~~~v~~l 199 (270)
+.++.+.
T Consensus 120 ~~~l~~~ 126 (153)
T 3hv2_A 120 DQELLLA 126 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876554
No 77
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=78.68 E-value=5.2 Score=35.79 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=35.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
.+|..++.+++|++.++ +.|+|+|.+.+-++++++++++.+.
T Consensus 183 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~ 224 (273)
T 2b7n_A 183 AKIEIECESFEEAKNAM---NAGADIVMCDNLSVLETKEIAAYRD 224 (273)
T ss_dssp CCEEEEESSHHHHHHHH---HHTCSEEEEETCCHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhh
Confidence 47999999999987665 5799999999999999988777664
No 78
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=78.56 E-value=2.2 Score=39.37 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=34.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
..+|..++.|.+|++.+ ++.|+|+|+|+.-+++++++..+.+
T Consensus 209 ~~~ieVEvdtlde~~eA---l~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 209 EVPVQIEVETLDQLRTA---LAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp -CCCEEEESSHHHHHHH---HHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35799999999987654 5579999999999999988877655
No 79
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=78.49 E-value=1.8 Score=38.03 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=57.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEe-cChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V-~~~ed~e~~~~~~~~~~~vvv 138 (270)
.+.+..|.+.|+|++++++-..+...++.+.. ++.|..+..++.- ++.+.++.++..... ++.+
T Consensus 112 ~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~-------------~~~gl~~i~l~~p~t~~~rl~~ia~~a~g--fiy~ 176 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDLPPEEAEELKAVM-------------KKYVLSFVPLGAPTSTRKRIKLICEAADE--MTYF 176 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH-------------HHTTCEECCEECTTCCHHHHHHHHHHCSS--CEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCcEEEEeCCCCCHHHHHHHHHhCCC--CEEE
Confidence 56778899999999999864333333332221 1122221112222 334555565554332 3322
Q ss_pred eC-C---CC-eee---chhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 139 DL-P---DW-QVI---PAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 139 ~~-~---DW-tiI---PlENlIA~~q~~-~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
.. . +- +-. ++.++++.+.+. +..|+. .+++++.++. +..|+|||++-+
T Consensus 177 vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~----~~~gADgvIVGS 235 (262)
T 2ekc_A 177 VSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE----IGSFADGVVVGS 235 (262)
T ss_dssp ESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH----HHTTSSEEEECH
T ss_pred EecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH----HHcCCCEEEECH
Confidence 11 1 11 122 355677666432 223433 4567777765 567899999853
No 80
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=78.33 E-value=8.8 Score=27.89 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=39.7
Q ss_pred CceEEEeCCCCeeechhhhhhcccC---CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQG---SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~---~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
.+.+|++..-... .--.++..+.. ....|+...... +......+++.|+++++.+|-++.++.+.
T Consensus 53 ~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (136)
T 3hdv_A 53 IGLMITDLRMQPE-SGLDLIRTIRASERAALSIIVVSGDT-DVEEAVDVMHLGVVDFLLKPVDLGKLLEL 120 (136)
T ss_dssp EEEEEECSCCSSS-CHHHHHHHHHTSTTTTCEEEEEESSC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CcEEEEeccCCCC-CHHHHHHHHHhcCCCCCCEEEEeCCC-ChHHHHHHHhCCcceEEeCCCCHHHHHHH
Confidence 5677775442222 12233333332 345666655544 34556788899999999999999876543
No 81
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=78.19 E-value=7.1 Score=29.17 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++..-.. ..--.++..+.. ....|+......+ ......+++.|+++++.+|-++.++.+.
T Consensus 58 ~~~dliilD~~l~~-~~g~~~~~~lr~~~~~~~~pii~~t~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 128 (152)
T 3heb_A 58 GRAQLVLLDLNLPD-MTGIDILKLVKENPHTRRSPVVILTTTDD-QREIQRCYDLGANVYITKPVNYENFANA 128 (152)
T ss_dssp TCBEEEEECSBCSS-SBHHHHHHHHHHSTTTTTSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCCCEEEEeCCCCC-CcHHHHHHHHHhcccccCCCEEEEecCCC-HHHHHHHHHCCCcEEEeCCCCHHHHHHH
Confidence 34677777544222 122223333322 3445665555443 3445678899999999999999876544
No 82
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=78.12 E-value=12 Score=26.35 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=46.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.++++..-.. ..--.++..+. .....++......+ ......+++.|++|.+.+|-++
T Consensus 29 ~~~~~~~a~~~~~~-~~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~kp~~~ 105 (121)
T 2pl1_A 29 DAEDAKEADYYLNE-HIPDIAIVDLGLPD-EDGLSLIRRWRSNDVSLPILVLTARES-WQDKVEVLSAGADDYVTKPFHI 105 (121)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSCCSS-SCHHHHHHHHHHTTCCSCEEEEESCCC-HHHHHHHHHTTCSEEEESSCCH
T ss_pred EeCCHHHHHHHHhc-cCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEEEecCCC-HHHHHHHHHcCccceEECCCCH
Confidence 44565543332222 34678888554322 12223344333 22455666554433 3455788999999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
+++...
T Consensus 106 ~~l~~~ 111 (121)
T 2pl1_A 106 EEVMAR 111 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 83
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=77.75 E-value=8.3 Score=36.67 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=65.1
Q ss_pred hhHHHHHHHhCCcEEEEcCc--c----hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCC
Q 024251 60 KQVMTAAVERGWNTFVFLSE--N----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~--~----~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~ 133 (270)
.+.+.+++|.|+|.|+++.. + .+.++++.+- -+.++.+ ..|.+.++.+.+.. ..+
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~----------------~~i~Vi~-g~V~t~e~A~~a~~--aGA 206 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK----------------MNIDVIV-GNVVTEEATKELIE--NGA 206 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTT----------------CCCEEEE-EEECSHHHHHHHHH--TTC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhc----------------CCCeEEE-eecCCHHHHHHHHH--cCC
Confidence 78999999999999887432 1 1222222211 0222211 26778877655544 367
Q ss_pred ceEEEeC--------C---CCeeec----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 134 ENIVIDL--------P---DWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 134 ~~vvv~~--------~---DWtiIP----lENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
|.|++-. + +|. .| +.++...++..+..||+ .+.+.+++..+ |+.|+|||.+-+.
T Consensus 207 D~I~vG~g~Gs~~~tr~~~g~g-~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~ka---lalGAd~V~vGt~ 277 (400)
T 3ffs_A 207 DGIKVGIGPGSICTTRIVAGVG-VPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKA---LAVGASSVMIGSI 277 (400)
T ss_dssp SEEEECC---------CCSCBC-CCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHH---HTTTCSEEEECGG
T ss_pred CEEEEeCCCCcCcccccccccc-hhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHH---HHcCCCEEEEChH
Confidence 8888821 1 121 34 33444434444667888 68888887665 4679999998765
No 84
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=77.64 E-value=11 Score=33.75 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=62.5
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
.+.+..++|.|++.+.+.-++ .+..+.+.+ .|.++. ..+.+.++...+.. ...|.+++
T Consensus 86 ~~~~~~~~~~g~d~V~~~~g~p~~~~~~l~~-----------------~gi~vi--~~v~t~~~a~~~~~--~GaD~i~v 144 (328)
T 2gjl_A 86 AEYRAAIIEAGIRVVETAGNDPGEHIAEFRR-----------------HGVKVI--HKCTAVRHALKAER--LGVDAVSI 144 (328)
T ss_dssp HHHHHHHHHTTCCEEEEEESCCHHHHHHHHH-----------------TTCEEE--EEESSHHHHHHHHH--TTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCcHHHHHHHHH-----------------cCCCEE--eeCCCHHHHHHHHH--cCCCEEEE
Confidence 578999999999998876432 223322221 133332 45677776444332 45788888
Q ss_pred eCCCC------eeechhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 139 DLPDW------QVIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 139 ~~~DW------tiIPlENlIA~~q~~-~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
..... ..+|.-.++.++... +..|++ .+.+.+++..++ +.|+|||.+-+
T Consensus 145 ~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al---~~GAdgV~vGs 202 (328)
T 2gjl_A 145 DGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAAL---ALGADAINMGT 202 (328)
T ss_dssp ECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH---HHTCSEEEESH
T ss_pred ECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH---HcCCCEEEECH
Confidence 65321 123444555554332 334554 366777776655 46999999864
No 85
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=77.58 E-value=2.9 Score=37.69 Aligned_cols=114 Identities=9% Similarity=0.107 Sum_probs=59.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec-ChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~-~~ed~e~~~~~~~~~~~vvv 138 (270)
...+..|.|.|+|++++++-..|...++... .+..|.....++.-+ +.+.++.++... .+++-.
T Consensus 115 ~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~-------------~~~~gl~~I~lvap~t~~eri~~i~~~~--~gfiY~ 179 (271)
T 3nav_A 115 DDFYQRCQKAGVDSVLIADVPTNESQPFVAA-------------AEKFGIQPIFIAPPTASDETLRAVAQLG--KGYTYL 179 (271)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHHHH-------------HHHTTCEEEEEECTTCCHHHHHHHHHHC--CSCEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHHC--CCeEEE
Confidence 5689999999999999875322222222222 122233322232223 345555555542 233332
Q ss_pred ------eCCCCee-echhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 139 ------DLPDWQV-IPAENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 139 ------~~~DWti-IPlENlIA~~q~~-~~~i~--a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.+..-.+ -+++.++..+... +.-++ ..++++++|+. .++.|+|||++-+-
T Consensus 180 vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~---~~~~gADgvIVGSA 239 (271)
T 3nav_A 180 LSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQ---AIEAGAAGAISGSA 239 (271)
T ss_dssp CCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHH---HHHTTCSEEEESHH
T ss_pred EeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHH---HHHcCCCEEEECHH
Confidence 1121111 2356677765432 22333 34678888763 56789999998653
No 86
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=77.51 E-value=13 Score=31.26 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=47.0
Q ss_pred eeec-hhhhhhccc-CCCceEEEEcCCHH-----HHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 144 QVIP-AENIVASFQ-GSGKTVFAISKTPS-----EAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 144 tiIP-lENlIA~~q-~~~~~i~a~v~~~~-----eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
+-|| ||.++..+. +.+..+.-+.++.. -++.++..+++ .+-|++..-|+..++.+++..
T Consensus 77 ~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~-~~~v~i~Sf~~~~l~~~~~~~ 142 (224)
T 1vd6_A 77 PDLPRLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRG-REGVWVSSFDPLALLALRKAA 142 (224)
T ss_dssp TTCCBHHHHHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTTT-CSSEEEEESCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHhhhccCCceEEEEECCCCCccHHHHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHC
Confidence 4455 999999987 55678999998754 25678888888 888999999999888888754
No 87
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=77.41 E-value=1.4 Score=43.66 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=84.0
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 58 ~~Ke~v-T~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
+|++-+ .-|+|.|+|.+.++. .+++.+.++.++ +.+.|+.+..+.+|.+++-++.+..-+...|-
T Consensus 217 kD~~dl~~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~-------------l~~~g~~i~IIAKIE~~eav~nldeIl~~sDG 283 (520)
T 3khd_A 217 KDKNDILNFAIPMGCNFIAASFIQSADDVRLIRNL-------------LGPRGRHIKIIPKIENIEGIIHFDKILAESDG 283 (520)
T ss_dssp HHHHHHHHTHHHHTCCEEEETTCCSHHHHHHHHHH-------------HTTTTTTSEEEEEECSHHHHHTHHHHHHHSSC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCcEEEEECCHHHHHhHHHHHHhCCc
Confidence 466666 999999999887764 234444444443 33445667888999999988776555444677
Q ss_pred EEEeCCCC-eeechhhh-------hhcccCCCceEEEE-------c----CCHHHHHHHHHHHhcccCeEEEecCC----
Q 024251 136 IVIDLPDW-QVIPAENI-------VASFQGSGKTVFAI-------S----KTPSEAQIFLEALEQGLGGIVLKVED---- 192 (270)
Q Consensus 136 vvv~~~DW-tiIPlENl-------IA~~q~~~~~i~a~-------v----~~~~eA~~~l~~LE~G~DGVvl~~~d---- 192 (270)
++|-..|- -=||+|.+ |.+....+.-++.. + .+-.|+--...+.--|+|+|+|..+.
T Consensus 284 IMVARGDLgvEi~~e~vp~~Qk~iI~~c~~aGKPVi~ATQMLeSMi~~p~PTRAEvsDVanAVldGaDavMLSgETA~G~ 363 (520)
T 3khd_A 284 IMIARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANAVLDGTDCVMLSGETAGGK 363 (520)
T ss_dssp EEECHHHHTTTSCGGGHHHHHHHHHHHHHHHTCCEEECCCCCGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCS
T ss_pred EEEccccccccCCHHHHHHHHHHHHHHHHHcCCCeEEeehhhHHHhcCCCccHHHHHHHHHHHHhCCCEEEecccccCCc
Confidence 77732221 12466664 33332223334431 2 34578888899999999999996442
Q ss_pred -H-HHHHHHHHhhc
Q 024251 193 -V-KAVLALKEYFD 204 (270)
Q Consensus 193 -~-~~v~~l~~~~~ 204 (270)
| +.|+-+.+++.
T Consensus 364 yPveaV~~M~~I~~ 377 (520)
T 3khd_A 364 FPVEAVTIMSKICL 377 (520)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 3 45666666553
No 88
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=77.30 E-value=10 Score=26.91 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=45.1
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
...+.++.-..... ...+.++++..-... .--.++..+.. ....++......+ ......+++.|++|.+.+|-++.
T Consensus 32 ~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~ 108 (123)
T 1xhf_A 32 EATDGAEMHQILSE-YDINLVIMDINLPGK-NGLLLARELREQANVALMFLTGRDN-EVDKILGLEIGADDYITKPFNPR 108 (123)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSSCSSS-CHHHHHHHHHHHCCCEEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEcCCCCCC-CHHHHHHHHHhCCCCcEEEEECCCC-hHHHHHHHhcCcceEEeCCCCHH
Confidence 34555543332222 356888885543221 11123333321 3455665554433 34557788999999999999998
Q ss_pred HHHH
Q 024251 195 AVLA 198 (270)
Q Consensus 195 ~v~~ 198 (270)
++..
T Consensus 109 ~l~~ 112 (123)
T 1xhf_A 109 ELTI 112 (123)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 89
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=77.26 E-value=6.8 Score=29.76 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=46.3
Q ss_pred EecChhhhhhhccccC-CCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 116 EVSTPQELQQLQPADG-QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~-~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
...+.++.-....... ..+.+|++..-... .--.++..+. .....|+......+ ......+++.|++|++.+|-+
T Consensus 66 ~~~~~~~al~~l~~~~~~~dliilD~~l~~~-~g~~~~~~lr~~~~~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~KP~~ 143 (157)
T 3hzh_A 66 TAADGEEAVIKYKNHYPNIDIVTLXITMPKM-DGITCLSNIMEFDKNARVIMISALGK-EQLVKDCLIKGAKTFIVKPLD 143 (157)
T ss_dssp EESSHHHHHHHHHHHGGGCCEEEECSSCSSS-CHHHHHHHHHHHCTTCCEEEEESCCC-HHHHHHHHHTTCSEEEESSCC
T ss_pred EECCHHHHHHHHHhcCCCCCEEEEeccCCCc-cHHHHHHHHHhhCCCCcEEEEeccCc-HHHHHHHHHcCCCEEEeCCCC
Confidence 4566655443333221 46788886542221 1112222222 23456666655433 345667899999999999999
Q ss_pred HHHHHH
Q 024251 193 VKAVLA 198 (270)
Q Consensus 193 ~~~v~~ 198 (270)
+.++.+
T Consensus 144 ~~~l~~ 149 (157)
T 3hzh_A 144 RAKVLQ 149 (157)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 90
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=77.22 E-value=14 Score=26.15 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=45.7
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHH
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKA 195 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~ 195 (270)
..+.++....... ...+.++++..-... .--.++..+.. ....++......+ ......+++.|++|.+.+|-++.+
T Consensus 32 ~~~~~~~~~~~~~-~~~dlvi~d~~l~~~-~g~~~~~~l~~~~~~~ii~~s~~~~-~~~~~~~~~~ga~~~l~Kp~~~~~ 108 (122)
T 1zgz_A 32 TASGAGLREIMQN-QSVDLILLDINLPDE-NGLMLTRALRERSTVGIILVTGRSD-RIDRIVGLEMGADDYVTKPLELRE 108 (122)
T ss_dssp ESSHHHHHHHHHH-SCCSEEEEESCCSSS-CHHHHHHHHHTTCCCEEEEEESSCC-HHHHHHHHHHTCSEEEESSCCHHH
T ss_pred ecCHHHHHHHHhc-CCCCEEEEeCCCCCC-ChHHHHHHHHhcCCCCEEEEECCCC-hhhHHHHHHhCHHHHccCCCCHHH
Confidence 3454443332222 346888886553322 22234444432 3455665554433 345567889999999999999887
Q ss_pred HHH
Q 024251 196 VLA 198 (270)
Q Consensus 196 v~~ 198 (270)
+.+
T Consensus 109 l~~ 111 (122)
T 1zgz_A 109 LVV 111 (122)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 91
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=77.17 E-value=13 Score=31.19 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=61.5
Q ss_pred hhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC-hhhhhhhccccCCCceEE
Q 024251 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~-~ed~e~~~~~~~~~~~vv 137 (270)
.+++.++.+.|++++-+.. +..+.+++..++.++.. ..++ .+..+ +.+.. .++.+.+.. ..++.|.
T Consensus 39 ~~~a~~~~~~G~~~i~~~~~~~i~~i~~~~~~p~i~~--~~~~--~~~~~------~~i~~~~~~i~~~~~--~Gad~V~ 106 (234)
T 1yxy_A 39 PLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGI--IKKD--YPPQE------PFITATMTEVDQLAA--LNIAVIA 106 (234)
T ss_dssp HHHHHHHHHHTCSEEEEESHHHHHHHHTTCCSCEEEE--CBCC--CTTSC------CCBSCSHHHHHHHHT--TTCSEEE
T ss_pred HHHHHHHHHCCCcEeecCCHHHHHHHHHhCCCCEEee--EcCC--CCccc------cccCChHHHHHHHHH--cCCCEEE
Confidence 6889999999999988763 22333333333322211 0111 11001 11232 234333332 3577887
Q ss_pred EeCCC---CeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeE
Q 024251 138 IDLPD---WQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGI 186 (270)
Q Consensus 138 v~~~D---WtiIPlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGV 186 (270)
+.... +.--.+..++..+... +..++..+.+++||+ .+++.|+|.|
T Consensus 107 l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~~ea~---~a~~~Gad~i 157 (234)
T 1yxy_A 107 MDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGL---VAHQAGIDFV 157 (234)
T ss_dssp EECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHH---HHHHTTCSEE
T ss_pred EcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCCHHHHH---HHHHcCCCEE
Confidence 75542 2112345666665543 557888999999965 4567899988
No 92
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=76.81 E-value=14 Score=27.56 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=39.9
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-.. +.--.++..+.. ....|+......+ ......+++.|++|.+.+|-++.++.+.
T Consensus 61 ~~dlillD~~lp~-~~g~~l~~~l~~~~~~~~~piiils~~~~-~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 130 (149)
T 1i3c_A 61 RPNLILLDLNLPK-KDGREVLAEIKQNPDLKRIPVVVLTTSHN-EDDVIASYELHVNCYLTKSRNLKDLFKM 130 (149)
T ss_dssp CCSEEEECSCCSS-SCHHHHHHHHHHCTTTTTSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEeCCCCC-CcHHHHHHHHHhCcCcCCCeEEEEECCCC-hHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 4678888554322 122233433332 2345665554433 3446688899999999999999876554
No 93
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=76.74 E-value=19 Score=26.12 Aligned_cols=67 Identities=7% Similarity=0.112 Sum_probs=42.1
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++..-.. ..--.++..+.. ....++......+ ......+++.|++|++.+|-++.++.+.
T Consensus 61 ~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~t~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 131 (149)
T 1k66_A 61 PRPAVILLDLNLPG-TDGREVLQEIKQDEVLKKIPVVIMTTSSN-PKDIEICYSYSISSYIVKPLEIDRLTET 131 (149)
T ss_dssp CCCSEEEECSCCSS-SCHHHHHHHHTTSTTGGGSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCCcEEEEECCCCC-CCHHHHHHHHHhCcccCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEeCCCCHHHHHHH
Confidence 34678888554332 222234444443 2345666555433 4556678899999999999999876553
No 94
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=76.69 E-value=12 Score=30.95 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=25.2
Q ss_pred ceEEEE--cCCHHHHHHHHHHHhcccCeEEEec-----CCH-HHHHHHHHhh
Q 024251 160 KTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV-----EDV-KAVLALKEYF 203 (270)
Q Consensus 160 ~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~-~~v~~l~~~~ 203 (270)
..+++. ++ ++.++. +++.|+|||.+-. .|+ ..++++++.+
T Consensus 173 ~pvia~GGI~-~~nv~~---~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~ 220 (227)
T 2tps_A 173 IPIVGIGGIT-IDNAAP---VIQAGADGVSMISAISQAEDPESAARKFREEI 220 (227)
T ss_dssp CCEEEESSCC-TTTSHH---HHHTTCSEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCC-HHHHHH---HHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHH
Confidence 345443 34 565554 4567999998765 577 6666666655
No 95
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=76.57 E-value=11 Score=27.62 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=46.6
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.+|++. .... .--.++..+. .....++......+ ......+++.|++|++.+|-++
T Consensus 33 ~~~~~~~a~~~l~~-~~~dlvi~d~-~~~~-~g~~~~~~l~~~~~~~pii~ls~~~~-~~~~~~~~~~g~~~~l~kP~~~ 108 (142)
T 2qxy_A 33 WAKNEQEAFTFLRR-EKIDLVFVDV-FEGE-ESLNLIRRIREEFPDTKVAVLSAYVD-KDLIINSVKAGAVDYILKPFRL 108 (142)
T ss_dssp EESSHHHHHHHHTT-SCCSEEEEEC-TTTH-HHHHHHHHHHHHCTTCEEEEEESCCC-HHHHHHHHHHTCSCEEESSCCH
T ss_pred EECCHHHHHHHHhc-cCCCEEEEeC-CCCC-cHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHCCcceeEeCCCCH
Confidence 34555543332222 3578888854 2221 1112333332 23456766655443 4566788999999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 109 ~~l~~~ 114 (142)
T 2qxy_A 109 DYLLER 114 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876544
No 96
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=76.55 E-value=7 Score=35.95 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=66.2
Q ss_pred cCCCCeEEEEEEecChhhhhhhccccCCCce--------EEEeCCCCeeechhh-----hhhcccC-CCceEEEEcCCH-
Q 024251 105 DSGDRRVGSIIEVSTPQELQQLQPADGQAEN--------IVIDLPDWQVIPAEN-----IVASFQG-SGKTVFAISKTP- 169 (270)
Q Consensus 105 ~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~--------vvv~~~DWtiIPlEN-----lIA~~q~-~~~~i~a~v~~~- 169 (270)
..+|.+++.++.+.++++.+.+... .+|. ++++..+ .|-|. +...++. .+..++..+.|.
T Consensus 14 t~dg~~~~l~~n~~~p~~~~~a~~~--GadgVGL~RtE~l~ld~e~---~p~~~~q~~~~~~~~~~~~~~~v~VR~~d~g 88 (324)
T 2xz9_A 14 TPDGKKVMLAANIGTPKDVASALAN--GAEGVGLFRTEFLYMDRNS---LPSEEEQFEAYKEVVEKMGGRPVTIRTLDIG 88 (324)
T ss_dssp CTTSCEEEEEEEESSGGGHHHHHHT--TCSSEEEECCGGGTSSSSS---CCCHHHHHHHHHHHHHHTTTSCEEEECCCCB
T ss_pred ccCCCEEEEEEECCCHHHHHHHHhC--CCCeEeehhhhhhhccCCC---CCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 4568899999999999998887764 2444 4665544 56553 2222221 234578777663
Q ss_pred ----------------------------------HHHHHHHHHHhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 024251 170 ----------------------------------SEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (270)
Q Consensus 170 ----------------------------------~eA~~~l~~LE~G~DGVvl~-~~d~~~v~~l~~~~~~ 205 (270)
.+.+..+.++..|.+||+++ .++++|+++++++++.
T Consensus 89 ~dk~~~~~~~~~E~nP~LG~RgiR~~l~~p~~~~~ql~Ai~ra~~~G~~~ImvPmV~s~~E~~~a~~~v~~ 159 (324)
T 2xz9_A 89 GDKELPYLDMPKEMNPFLGYRAIRLCLDRPDIFKTQLRAILRASAYGNVQIMYPMISSVEEVRKANSILEE 159 (324)
T ss_dssp GGGCCTTTCCCCCSCGGGSSBTHHHHHHCHHHHHHHHHHHHHHGGGSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred cchhhhhhccccccCcccccceeeeeccchhhHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 24567889999999999985 3489998888887754
No 97
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=76.50 E-value=1.2 Score=43.99 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=84.5
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 58 ~~Ke~v-T~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
+|++-+ .-|+|.|+|.+.++. .+++.+.++.++ +.+.|..+..+.+|.+++-++.+..-+...|-
T Consensus 208 kD~~Dl~~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~-------------l~~~~~~~~iiaKIE~~eav~nldeIl~~sDg 274 (511)
T 3gg8_A 208 KDKHDILNFGIPMGCNFIAASFVQSADDVRYIRGL-------------LGPRGRHIRIIPKIENVEGLVNFDEILAEADG 274 (511)
T ss_dssp HHHHHHHHTTTTTTCCEEEETTCCSHHHHHHHHHH-------------HTGGGTTCEEEEEECSHHHHHTHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHhcCCCCeEEEEECCHHHHHhHHHHHHhCCe
Confidence 466666 999999999887764 234455444443 23334566788899999988776655555677
Q ss_pred EEEeCCCCe-eechhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecCC----
Q 024251 136 IVIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (270)
Q Consensus 136 vvv~~~DWt-iIPlENl-------IA~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~d---- 192 (270)
++|--.|-- =||+|.+ |......+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 275 imVaRGDLgvei~~e~v~~~qk~ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAEvsDVAnAV~dGaDavMLSgETA~G~ 354 (511)
T 3gg8_A 275 IMIARGDLGMEIPPEKVFLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADVANAVLDGTDCVMLSGETANGE 354 (511)
T ss_dssp EEEEHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCS
T ss_pred EEEecchhcCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHhCCCEEEecccccCCC
Confidence 887433321 1466653 33333333344441 234477888889999999999996442
Q ss_pred -H-HHHHHHHHhhcc
Q 024251 193 -V-KAVLALKEYFDG 205 (270)
Q Consensus 193 -~-~~v~~l~~~~~~ 205 (270)
| +.|+-+.+++.+
T Consensus 355 yPveaV~~M~~I~~~ 369 (511)
T 3gg8_A 355 FPVITVETMARICYE 369 (511)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 3 446555665543
No 98
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=76.45 E-value=18 Score=25.86 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=43.6
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHH
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKA 195 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~ 195 (270)
..+.++.-.... ..+.+.++++..-+..=-+ .++..+.. .+..++......+ ......+++.|+++.+.+|-++.+
T Consensus 32 ~~~~~~al~~~~-~~~~dlii~D~~~p~~~g~-~~~~~lr~~~~~~ii~~t~~~~-~~~~~~~~~~ga~~~l~KP~~~~~ 108 (120)
T 3f6p_A 32 AHDGNEAVEMVE-ELQPDLILLDIMLPNKDGV-EVCREVRKKYDMPIIMLTAKDS-EIDKVIGLEIGADDYVTKPFSTRE 108 (120)
T ss_dssp ESSHHHHHHHHH-TTCCSEEEEETTSTTTHHH-HHHHHHHTTCCSCEEEEEESSC-HHHHHHHHHTTCCEEEEESCCHHH
T ss_pred eCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCEEEEECCCC-hHHHHHHHhCCcceeEcCCCCHHH
Confidence 455554333222 2356888886653322111 23333322 2345555443332 234557889999999999999987
Q ss_pred HHH
Q 024251 196 VLA 198 (270)
Q Consensus 196 v~~ 198 (270)
+.+
T Consensus 109 l~~ 111 (120)
T 3f6p_A 109 LLA 111 (120)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 99
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=76.43 E-value=1.4 Score=32.74 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=45.7
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHH
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKA 195 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~ 195 (270)
..+.++.-.........+.+|++..-..-..--.++..+.. ....++......+. .....+++.|++|++.+|-++.+
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~-~~~~~~~~~g~~~~l~KP~~~~~ 113 (140)
T 3h5i_A 35 ALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEP-AVVEKIRSVTAYGYVMKSATEQV 113 (140)
T ss_dssp ESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSC-CCCGGGGGSCEEEEEETTCCHHH
T ss_pred ecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCH-HHHHHHHhCCCcEEEeCCCCHHH
Confidence 45544433322222346888886653221111223332221 34556665554433 34567889999999999999987
Q ss_pred HHHH
Q 024251 196 VLAL 199 (270)
Q Consensus 196 v~~l 199 (270)
+.+.
T Consensus 114 l~~~ 117 (140)
T 3h5i_A 114 LITI 117 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 100
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=76.34 E-value=7.7 Score=27.35 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=40.8
Q ss_pred CCceEEEeCCCCeeechhhhhhccc----CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q----~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-..-..-..++..+. .....++.. .. .+......+++.|+++++.+|-++.++.+.
T Consensus 49 ~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 118 (127)
T 2gkg_A 49 RPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GN-PDGFAQHRKLKAHADEYVAKPVDADQLVER 118 (127)
T ss_dssp CCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-EC-GGGHHHHHHSTTCCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ec-CCchhHHHHHHhCcchheeCCCCHHHHHHH
Confidence 4678888544320112223444433 235667766 43 334556688999999999999999876543
No 101
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=76.03 E-value=16 Score=26.80 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=48.7
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.++.-..... ...+.+|++..-.. ..--.++..+.. ....|+......+ ......+++.|+++++.+|-
T Consensus 37 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~ls~~~~-~~~~~~~~~~g~~~~l~kp~ 113 (147)
T 2zay_A 37 QCGNAIEAVPVAVK-THPHLIITEANMPK-ISGMDLFNSLKKNPQTASIPVIALSGRAT-AKEEAQLLDMGFIDFIAKPV 113 (147)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSS-SCHHHHHHHHHTSTTTTTSCEEEEESSCC-HHHHHHHHHHTCSEEEESSC
T ss_pred EeCCHHHHHHHHHc-CCCCEEEEcCCCCC-CCHHHHHHHHHcCcccCCCCEEEEeCCCC-HHHHHHHHhCCCCEEEeCCC
Confidence 34555543333222 35788888655332 222234444433 3556766655443 45566888999999999999
Q ss_pred CHHHHHHH
Q 024251 192 DVKAVLAL 199 (270)
Q Consensus 192 d~~~v~~l 199 (270)
++.++.+.
T Consensus 114 ~~~~L~~~ 121 (147)
T 2zay_A 114 NAIRLSAR 121 (147)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99876543
No 102
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=76.00 E-value=7.2 Score=34.91 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=66.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCC
Q 024251 60 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~ 133 (270)
-++.....+.|++++=+-.++ .+..+++.+- +=-|+..+| -+-++.+++++.. ..+
T Consensus 75 ~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~-v~lPvl~kd---------------fiid~~qv~~A~~--~GA 136 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRAS-VSIPVLRKD---------------FVVQPYQIHEARA--HGA 136 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHH-CSSCEEEES---------------CCCSHHHHHHHHH--TTC
T ss_pred HHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHh-CCCCEEECc---------------cccCHHHHHHHHH--cCC
Confidence 556666677899997665332 1222222111 001333222 1355656655543 457
Q ss_pred ceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 134 ~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
|.|++-..+-..--++.++..+..-+-.++..+.|.+|++.++ +.|+|-|-+.+.|
T Consensus 137 D~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~---~~Gad~IGv~~r~ 192 (272)
T 3qja_A 137 DMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRAL---KAGAKVIGVNARD 192 (272)
T ss_dssp SEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---HHTCSEEEEESBC
T ss_pred CEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH---HCCCCEEEECCCc
Confidence 7887743332222356667766656678999999999988765 5699999998765
No 103
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=75.95 E-value=6.6 Score=30.91 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=44.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-.... ....+.++++..-+..=-+| ++..+. .....|+...... +......+++.|++|.+.+|-++
T Consensus 36 ~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~-~~~~l~~~~~~~~ii~lt~~~-~~~~~~~a~~~Ga~~~l~KP~~~ 112 (184)
T 3rqi_A 36 QAHNKDEALKLAG-AEKFEFITVXLHLGNDSGLS-LIAPLCDLQPDARILVLTGYA-SIATAVQAVKDGADNYLAKPANV 112 (184)
T ss_dssp EECSHHHHHHHHT-TSCCSEEEECSEETTEESHH-HHHHHHHHCTTCEEEEEESSC-CHHHHHHHHHHTCSEEEESSCCH
T ss_pred EeCCHHHHHHHHh-hCCCCEEEEeccCCCccHHH-HHHHHHhcCCCCCEEEEeCCC-CHHHHHHHHHhCHHHheeCCCCH
Confidence 3455554332222 23467888844322111122 222221 2345666555443 34556788999999999999999
Q ss_pred HHHHH
Q 024251 194 KAVLA 198 (270)
Q Consensus 194 ~~v~~ 198 (270)
.++.+
T Consensus 113 ~~L~~ 117 (184)
T 3rqi_A 113 ESILA 117 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 104
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=75.89 E-value=11 Score=29.02 Aligned_cols=104 Identities=12% Similarity=0.097 Sum_probs=61.6
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
..+.....+.|.+-++++.+ .+.++++.+.+. . .++...++++.++++. ..+++.+|+-
T Consensus 20 ~~la~~L~~~g~~v~vid~~-~~~~~~~~~~g~-----------------~-~i~gd~~~~~~l~~a~--i~~ad~vi~~ 78 (140)
T 3fwz_A 20 SLLGEKLLASDIPLVVIETS-RTRVDELRERGV-----------------R-AVLGNAANEEIMQLAH--LECAKWLILT 78 (140)
T ss_dssp HHHHHHHHHTTCCEEEEESC-HHHHHHHHHTTC-----------------E-EEESCTTSHHHHHHTT--GGGCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEECC-HHHHHHHHHcCC-----------------C-EEECCCCCHHHHHhcC--cccCCEEEEE
Confidence 56666667889998887764 455554433211 1 1121224444444432 2457888875
Q ss_pred CCCCeeechhhh----hhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 140 LPDWQVIPAENI----VASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 140 ~~DWtiIPlENl----IA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..+- .+|+ .+.......+|++.+++.+.++.+. +.|+|-|+.+..
T Consensus 79 ~~~~----~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~---~~G~d~vi~p~~ 127 (140)
T 3fwz_A 79 IPNG----YEAGEIVASARAKNPDIEIIARAHYDDEVAYIT---ERGANQVVMGER 127 (140)
T ss_dssp CSCH----HHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHH---HTTCSEEEEHHH
T ss_pred CCCh----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH---HCCCCEEECchH
Confidence 5553 3443 1222234569999999999988765 489998885544
No 105
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=75.89 E-value=22 Score=26.46 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=48.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcc-cCeEEEecCC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVED 192 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G-~DGVvl~~~d 192 (270)
...+.++.-..... ...+.+|++..-.. ..-..++..+. .....|+...... +......+++.| ++|++.+|-+
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~~l~kP~~ 112 (154)
T 2rjn_A 36 TFTSPLDALEALKG-TSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIERVVISGYA-DAQATIDAVNRGKISRFLLKPWE 112 (154)
T ss_dssp EESCHHHHHHHHTT-SCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEEEEEECGG-GHHHHHHHHHTTCCSEEEESSCC
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcEEEEecCC-CHHHHHHHHhccchheeeeCCCC
Confidence 44565553333222 34788888655332 12223333332 2355676665544 456677888998 9999999999
Q ss_pred HHHHHHH
Q 024251 193 VKAVLAL 199 (270)
Q Consensus 193 ~~~v~~l 199 (270)
+.++.+.
T Consensus 113 ~~~L~~~ 119 (154)
T 2rjn_A 113 DEDVFKV 119 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876543
No 106
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=75.73 E-value=10 Score=35.45 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=65.7
Q ss_pred CchhHHHHHHHhCCcEEEEcCc--c-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE--N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~--~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
+..+.+..++|.|+|.++++.. + .+..+.+..+....| +..+ ....+.++++...+.. ..+|
T Consensus 108 ~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p------------~v~V-i~G~v~t~e~A~~a~~--aGAD 172 (366)
T 4fo4_A 108 GNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYP------------HLEI-IGGNVATAEGARALIE--AGVS 172 (366)
T ss_dssp TCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCT------------TCEE-EEEEECSHHHHHHHHH--HTCS
T ss_pred hHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcC------------CCce-EeeeeCCHHHHHHHHH--cCCC
Confidence 4578899999999999887432 1 111111122211000 2222 1135788887666554 3688
Q ss_pred eEEEeC---C--------CCeeec----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 135 NIVIDL---P--------DWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 135 ~vvv~~---~--------DWtiIP----lENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.+++-. . +|- +| +.++.+.+...+..|++ .+.++.++.. +|..|+|||++-+.
T Consensus 173 ~I~vG~gpGs~~~tr~~~g~g-~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~k---ala~GAd~V~vGs~ 242 (366)
T 4fo4_A 173 AVKVGIGPGSICTTRIVTGVG-VPQITAIADAAGVANEYGIPVIADGGIRFSGDISK---AIAAGASCVMVGSM 242 (366)
T ss_dssp EEEECSSCSTTBCHHHHHCCC-CCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHH---HHHTTCSEEEESTT
T ss_pred EEEEecCCCCCCCcccccCcc-cchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHH---HHHcCCCEEEEChH
Confidence 888820 0 122 23 22333322333567888 7888888654 55679999998765
No 107
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=75.59 E-value=12 Score=27.91 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.+|++..-... .--.++..+. .....|+...... +......+++.|++|++.+|-++.++.+.
T Consensus 61 ~~dlii~d~~l~~~-~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~ 128 (152)
T 3eul_A 61 LPDVALLDYRMPGM-DGAQVAAAVRSYELPTRVLLISAHD-EPAIVYQALQQGAAGFLLKDSTRTEIVKA 128 (152)
T ss_dssp CCSEEEEETTCSSS-CHHHHHHHHHHTTCSCEEEEEESCC-CHHHHHHHHHTTCSEEEETTCCHHHHHHH
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHhcCCCCeEEEEEccC-CHHHHHHHHHcCCCEEEecCCCHHHHHHH
Confidence 46778886543221 1122333332 2345566555443 34566788999999999999999876543
No 108
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=75.48 E-value=19 Score=26.05 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=47.9
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
..+.++.-..... ...+.++++..-.. ..--.++..+.. ....|+......+ ......+++.|+++++.+|-+
T Consensus 40 ~~~~~~a~~~l~~-~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~kP~~ 116 (143)
T 3cnb_A 40 AYNPFDAGDLLHT-VKPDVVMLDLMMVG-MDGFSICHRIKSTPATANIIVIAMTGALT-DDNVSRIVALGAETCFGKPLN 116 (143)
T ss_dssp ECSHHHHHHHHHH-TCCSEEEEETTCTT-SCHHHHHHHHHTSTTTTTSEEEEEESSCC-HHHHHHHHHTTCSEEEESSCC
T ss_pred ECCHHHHHHHHHh-cCCCEEEEecccCC-CcHHHHHHHHHhCccccCCcEEEEeCCCC-HHHHHHHHhcCCcEEEeCCCC
Confidence 3555543332222 34688888765332 222234444433 4556776655543 345678899999999999999
Q ss_pred HHHHHHH
Q 024251 193 VKAVLAL 199 (270)
Q Consensus 193 ~~~v~~l 199 (270)
+.++.+.
T Consensus 117 ~~~l~~~ 123 (143)
T 3cnb_A 117 FTLLEKT 123 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876553
No 109
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=75.38 E-value=9.1 Score=27.59 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=46.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.++.-..... ...+.++++..-... .--.++..+.. ....|+......++.. ..+++.|+++++.+|-
T Consensus 32 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~-~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~--~~~~~~g~~~~l~KP~ 107 (133)
T 3nhm_A 32 TAADGASGLQQALA-HPPDVLISDVNMDGM-DGYALCGHFRSEPTLKHIPVIFVSGYAPRTE--GPADQPVPDAYLVKPV 107 (133)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSSCSSS-CHHHHHHHHHHSTTTTTCCEEEEESCCC-------TTSCCCSEEEESSC
T ss_pred EECCHHHHHHHHhc-CCCCEEEEeCCCCCC-CHHHHHHHHHhCCccCCCCEEEEeCCCcHhH--HHHhhcCCceEEeccC
Confidence 34555543332222 357888885543221 12234443332 2456777766655444 7899999999999999
Q ss_pred CHHHHHHH-HHhh
Q 024251 192 DVKAVLAL-KEYF 203 (270)
Q Consensus 192 d~~~v~~l-~~~~ 203 (270)
++.++.+. ++++
T Consensus 108 ~~~~l~~~i~~~l 120 (133)
T 3nhm_A 108 KPPVLIAQLHALL 120 (133)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 99876543 3344
No 110
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=75.00 E-value=6.4 Score=36.50 Aligned_cols=36 Identities=6% Similarity=0.016 Sum_probs=31.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHhc-ccCeEEEecCCHH
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~-G~DGVvl~~~d~~ 194 (270)
...|++.+.+++-...+-+++.. |+||+.+-|.|..
T Consensus 177 ~i~vi~mIEt~~av~nldeIaa~~~vD~l~iG~~DLs 213 (339)
T 1izc_A 177 HVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYM 213 (339)
T ss_dssp HCEEEEEECSHHHHHTHHHHHTCTTCCCEEECHHHHH
T ss_pred CceEEEEEChHHHHHHHHHHhcCCCCCEEEECHHHHH
Confidence 35799999999999999999975 9999999998764
No 111
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=74.84 E-value=5.1 Score=36.43 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=36.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 160 ~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
.++..++.+++|++.++ +.|+|+|.|.+-++++++++++.+.
T Consensus 198 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~ 239 (299)
T 2jbm_A 198 LKVEVECSSLQEAVQAA---EAGADLVLLDNFKPEELHPTATVLK 239 (299)
T ss_dssp SCEEEEESSHHHHHHHH---HTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred CeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhh
Confidence 58999999999877655 6899999999999999988877664
No 112
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=74.69 E-value=1.6 Score=44.01 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=86.1
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
++|++-+.-|+|.|+|.+.++. .+++.++++.++ +...|..+..+.+|.+++-++.+-.-....|-
T Consensus 193 ekD~~dl~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~-------------l~~~~~~i~IiaKIE~~eav~nldeIl~~sDG 259 (606)
T 3t05_A 193 EKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREI-------------LEEQKANISVFPKIENQEGIDNIEEILEVSDG 259 (606)
T ss_dssp HHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HHHTTCCCEEEECCCSHHHHHTHHHHHHHCSC
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCeEEEEeCCHHHHHhHHHHHHhCCE
Confidence 3578889999999999777663 234455544443 33345567788999999988776555555777
Q ss_pred EEEeCCCCe-eechhh-------hhhcccCCCceEEEE-----------cCCHHHHHHHHHHHhcccCeEEEecCC----
Q 024251 136 IVIDLPDWQ-VIPAEN-------IVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (270)
Q Consensus 136 vvv~~~DWt-iIPlEN-------lIA~~q~~~~~i~a~-----------v~~~~eA~~~l~~LE~G~DGVvl~~~d---- 192 (270)
++|--.|-- =||+|+ +|......+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 260 ImVARGDLgvei~~e~vp~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAv~dGaDavMLSgETA~G~ 339 (606)
T 3t05_A 260 LMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGL 339 (606)
T ss_dssp EEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSSSGGGTTCSSCCHHHHHHHHHHHHHTCSEEEECHHHHSCS
T ss_pred EEEccccccCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHcCCCEEEecccccCCC
Confidence 887333321 245555 343333333344441 234477888889999999999998432
Q ss_pred --HHHHHHHHHhhcc
Q 024251 193 --VKAVLALKEYFDG 205 (270)
Q Consensus 193 --~~~v~~l~~~~~~ 205 (270)
.+.|+-+.+++.+
T Consensus 340 yPveaV~~m~~I~~~ 354 (606)
T 3t05_A 340 YPEEAVKTMRNIAVS 354 (606)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 3556666665543
No 113
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=74.59 E-value=14 Score=27.59 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=47.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.+|++..-.. ..--.++..+. .....|+......+ ......+++.|++|++.+|-++
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kp~~~ 112 (153)
T 3cz5_A 36 EAADAGEAYRLYRE-TTPDIVVMDLTLPG-PGGIEATRHIRQWDGAARILIFTMHQG-SAFALKAFEAGASGYVTKSSDP 112 (153)
T ss_dssp EESSHHHHHHHHHT-TCCSEEEECSCCSS-SCHHHHHHHHHHHCTTCCEEEEESCCS-HHHHHHHHHTTCSEEEETTSCT
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCeEEEEECCCC-HHHHHHHHHCCCcEEEecCCCH
Confidence 45666554333322 34688888554322 12223333332 23456666655443 4556788999999999999998
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 113 ~~L~~~ 118 (153)
T 3cz5_A 113 AELVQA 118 (153)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 876543
No 114
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=74.21 E-value=8 Score=28.59 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=40.5
Q ss_pred CCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.+|++..-...=-+ .++..+. .....|+...... +......+++.|++|++.+|-++.++.+.
T Consensus 66 ~~~dlvi~D~~l~~~~g~-~~~~~l~~~~~~~~ii~lt~~~-~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~ 134 (146)
T 4dad_A 66 DAFDILMIDGAALDTAEL-AAIEKLSRLHPGLTCLLVTTDA-SSQTLLDAMRAGVRDVLRWPLEPRALDDA 134 (146)
T ss_dssp TTCSEEEEECTTCCHHHH-HHHHHHHHHCTTCEEEEEESCC-CHHHHHHHHTTTEEEEEESSCCHHHHHHH
T ss_pred CCCCEEEEeCCCCCccHH-HHHHHHHHhCCCCcEEEEeCCC-CHHHHHHHHHhCCceeEcCCCCHHHHHHH
Confidence 456788886543221111 2222221 2345666554443 34566788999999999999999876654
No 115
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=74.17 E-value=13 Score=30.71 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=47.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...|.++++..-... .--.++..+.. ....|+...... +......+++.|+||.+.+|-++
T Consensus 52 ~~~~~~~al~~~~~-~~~dlvllD~~lp~~-~g~~~~~~lr~~~~~~~ii~lt~~~-~~~~~~~~~~~Ga~~yl~Kp~~~ 128 (250)
T 3r0j_A 52 TATNGAQALDRARE-TRPDAVILDVXMPGM-DGFGVLRRLRADGIDAPALFLTARD-SLQDKIAGLTLGGDDYVTKPFSL 128 (250)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSSS-CHHHHHHHHHHTTCCCCEEEEECST-THHHHHHHHTSTTCEEEESSCCH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCC-CHHHHHHHHHhcCCCCCEEEEECCC-CHHHHHHHHHcCCcEEEeCCCCH
Confidence 34555543332222 357888886553321 12233443332 245565554433 34556788999999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 129 ~~L~~~ 134 (250)
T 3r0j_A 129 EEVVAR 134 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 116
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=74.04 E-value=12 Score=28.23 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=61.4
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
-..+.....+.|++-++++.+ .+..+++..- |.. ..+...++++.++.+ ...+.+.+|+
T Consensus 18 G~~la~~L~~~g~~V~~id~~-~~~~~~~~~~-----------------~~~-~~~gd~~~~~~l~~~--~~~~~d~vi~ 76 (141)
T 3llv_A 18 GVGLVRELTAAGKKVLAVDKS-KEKIELLEDE-----------------GFD-AVIADPTDESFYRSL--DLEGVSAVLI 76 (141)
T ss_dssp HHHHHHHHHHTTCCEEEEESC-HHHHHHHHHT-----------------TCE-EEECCTTCHHHHHHS--CCTTCSEEEE
T ss_pred HHHHHHHHHHCCCeEEEEECC-HHHHHHHHHC-----------------CCc-EEECCCCCHHHHHhC--CcccCCEEEE
Confidence 356777777889987777664 4444433321 111 122234556655544 2346788887
Q ss_pred eCCCCee-echhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 139 DLPDWQV-IPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 139 ~~~DWti-IPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+... +-+-. .|.-.+ ..+|++.+++.+..+.+ .+.|+|-|+.+..
T Consensus 77 ~~~~~~~n~~~~~-~a~~~~-~~~iia~~~~~~~~~~l---~~~G~~~vi~p~~ 125 (141)
T 3llv_A 77 TGSDDEFNLKILK-ALRSVS-DVYAIVRVSSPKKKEEF---EEAGANLVVLVAD 125 (141)
T ss_dssp CCSCHHHHHHHHH-HHHHHC-CCCEEEEESCGGGHHHH---HHTTCSEEEEHHH
T ss_pred ecCCHHHHHHHHH-HHHHhC-CceEEEEEcChhHHHHH---HHcCCCEEECHHH
Confidence 5553321 11111 122223 67899999999988766 4679997775544
No 117
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=73.89 E-value=8.6 Score=33.91 Aligned_cols=82 Identities=18% Similarity=0.077 Sum_probs=50.2
Q ss_pred Chhhhhhhcccc--CCCceEEEeCCCCeeechhh---hhhcccCCCceEEEEcC--CHHHHHHHH-HHHhcccCeEEE--
Q 024251 119 TPQELQQLQPAD--GQAENIVIDLPDWQVIPAEN---IVASFQGSGKTVFAISK--TPSEAQIFL-EALEQGLGGIVL-- 188 (270)
Q Consensus 119 ~~ed~e~~~~~~--~~~~~vvv~~~DWtiIPlEN---lIA~~q~~~~~i~a~v~--~~~eA~~~l-~~LE~G~DGVvl-- 188 (270)
+++...+++... ..+|++-+.+. ..+|. +.+.....+...+..++ +.+++...+ .+++.|++|+..
T Consensus 157 s~~~i~~a~~~a~~~GAD~vkt~~~----~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvgr 232 (263)
T 1w8s_A 157 APEIVAYAARIALELGADAMKIKYT----GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGR 232 (263)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECC----SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCC----CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEeh
Confidence 556555543222 35899988753 13344 33333222556666677 889888555 688999999975
Q ss_pred ---ecCCHH-HHHHHHHhhc
Q 024251 189 ---KVEDVK-AVLALKEYFD 204 (270)
Q Consensus 189 ---~~~d~~-~v~~l~~~~~ 204 (270)
..+||. .+++|++++.
T Consensus 233 aI~~~~dp~~~~~~l~~~v~ 252 (263)
T 1w8s_A 233 NVWQRRDALKFARALAELVY 252 (263)
T ss_dssp HHHTSTTHHHHHHHHHHHHC
T ss_pred hhcCCcCHHHHHHHHHHHHh
Confidence 456764 4566666654
No 118
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=73.33 E-value=18 Score=30.65 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=63.0
Q ss_pred chhHHHHHHHhCCcEEEEcCcch---hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCce
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~---e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~ 135 (270)
-.+++.++++.|++.+=++..+. +..+++.+ .+..+++=. +.+.++.+.+... .+++
T Consensus 27 ~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~-----------------~~~~~gag~-vl~~d~~~~A~~~--GAd~ 86 (207)
T 2yw3_A 27 LLGLARVLEEEGVGALEITLRTEKGLEALKALRK-----------------SGLLLGAGT-VRSPKEAEAALEA--GAAF 86 (207)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTT-----------------SSCEEEEES-CCSHHHHHHHHHH--TCSE
T ss_pred HHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhC-----------------CCCEEEeCe-EeeHHHHHHHHHc--CCCE
Confidence 36789999999999887764332 22222222 122223322 4566666655543 5678
Q ss_pred EEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 136 vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
++....| .|+-.....+ +..++-.+.|++|++.+ ++.|+|.|-+-|..+
T Consensus 87 v~~~~~d---~~v~~~~~~~---g~~~i~G~~t~~e~~~A---~~~Gad~v~~fpa~~ 135 (207)
T 2yw3_A 87 LVSPGLL---EEVAALAQAR---GVPYLPGVLTPTEVERA---LALGLSALKFFPAEP 135 (207)
T ss_dssp EEESSCC---HHHHHHHHHH---TCCEEEEECSHHHHHHH---HHTTCCEEEETTTTT
T ss_pred EEcCCCC---HHHHHHHHHh---CCCEEecCCCHHHHHHH---HHCCCCEEEEecCcc
Confidence 8764333 3443333332 33456568999998655 577999999988543
No 119
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=73.10 E-value=11 Score=27.02 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=48.5
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc----CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q----~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.++.-..... ...+.++++..-... .--.++..+. .....++......++.. ...++.|+++++.+|-
T Consensus 32 ~~~~~~~a~~~l~~-~~~dlii~D~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~--~~~~~~g~~~~l~KP~ 107 (127)
T 3i42_A 32 YVMSGTDALHAMST-RGYDAVFIDLNLPDT-SGLALVKQLRALPMEKTSKFVAVSGFAKNDL--GKEACELFDFYLEKPI 107 (127)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESBCSSS-BHHHHHHHHHHSCCSSCCEEEEEECC-CTTC--CHHHHHHCSEEEESSC
T ss_pred EECCHHHHHHHHHh-cCCCEEEEeCCCCCC-CHHHHHHHHHhhhccCCCCEEEEECCcchhH--HHHHHHhhHHheeCCC
Confidence 34555543333222 457888886543322 1122333322 34567777766665554 7788999999999999
Q ss_pred CHHHHHHHHH
Q 024251 192 DVKAVLALKE 201 (270)
Q Consensus 192 d~~~v~~l~~ 201 (270)
++.++.+..+
T Consensus 108 ~~~~L~~~i~ 117 (127)
T 3i42_A 108 DIASLEPILQ 117 (127)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9997765433
No 120
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=72.47 E-value=12 Score=34.12 Aligned_cols=107 Identities=11% Similarity=0.132 Sum_probs=61.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEE
Q 024251 60 KQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~--~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
.+.+..++|.|++.+.+.-+. .+.++.+.. .|..+ ...+.+.++...+.. ...|+++
T Consensus 112 ~~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~-----------------~g~~v--~~~v~t~~~a~~a~~--~GaD~i~ 170 (369)
T 3bw2_A 112 DAKLAVLLDDPVPVVSFHFGVPDREVIARLRR-----------------AGTLT--LVTATTPEEARAVEA--AGADAVI 170 (369)
T ss_dssp HHHHHHHHHSCCSEEEEESSCCCHHHHHHHHH-----------------TTCEE--EEEESSHHHHHHHHH--TTCSEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHH-----------------CCCeE--EEECCCHHHHHHHHH--cCCCEEE
Confidence 677889999999988776432 344443322 13333 335678776544433 4589999
Q ss_pred EeCCC-----Cee----------echhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHHhcccCeEEEec
Q 024251 138 IDLPD-----WQV----------IPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 138 v~~~D-----Wti----------IPlENlIA~~q~-~~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
++... .+. ++.-.++.++.. .+..|++. +.|++++..+ |+.|+|||.+-+
T Consensus 171 v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~---l~~GAd~V~vGs 238 (369)
T 3bw2_A 171 AQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAV---LAAGADAAQLGT 238 (369)
T ss_dssp EECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH---HHTTCSEEEESH
T ss_pred EeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHHH---HHcCCCEEEECh
Confidence 96531 111 342344444321 13345543 5677776655 558999999854
No 121
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=72.36 E-value=10 Score=32.91 Aligned_cols=108 Identities=16% Similarity=0.026 Sum_probs=61.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
-.+++.++++.|++.+=++..+..-.+.+..+..- ++ +..+++= .+.+.++.+.+... .+++++.
T Consensus 40 ~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~----------~~--~~~igag-tvl~~d~~~~A~~a--GAd~v~~ 104 (225)
T 1mxs_A 40 ILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQ----------RP--ELCVGAG-TVLDRSMFAAVEAA--GAQFVVT 104 (225)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHH----------CT--TSEEEEE-CCCSHHHHHHHHHH--TCSSEEC
T ss_pred HHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHh----------Cc--ccEEeeC-eEeeHHHHHHHHHC--CCCEEEe
Confidence 35789999999999888775432111111111110 01 2223332 24566765555543 5678876
Q ss_pred eCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
-..| .|+-..-. ..+..++..+.|++|+.. +++.|+|-|-+-|
T Consensus 105 p~~d---~~v~~~~~---~~g~~~i~G~~t~~e~~~---A~~~Gad~vk~FP 147 (225)
T 1mxs_A 105 PGIT---EDILEAGV---DSEIPLLPGISTPSEIMM---GYALGYRRFKLFP 147 (225)
T ss_dssp SSCC---HHHHHHHH---HCSSCEECEECSHHHHHH---HHTTTCCEEEETT
T ss_pred CCCC---HHHHHHHH---HhCCCEEEeeCCHHHHHH---HHHCCCCEEEEcc
Confidence 4333 23322222 233455556999999754 5689999998877
No 122
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=72.01 E-value=20 Score=30.21 Aligned_cols=133 Identities=15% Similarity=0.030 Sum_probs=63.9
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcCc---chhhhhhcccee--eeeeeeecCCccccCCCCeEEEEEEecChhhhhh
Q 024251 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA--LLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQ 125 (270)
Q Consensus 53 vWiw~--~~Ke~vT~ALEsG~d~~vv~~~---~~e~a~~l~~i~--~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~ 125 (270)
+++-. .+.+.+..+++.|+|++++... +.+..+++..++ ++-.+-.++|...- .|-.-. .-.+..++..
T Consensus 76 vi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~g~~i~~~~d~~~~~v~~-~g~~~~---~~~~~~e~~~ 151 (241)
T 1qo2_A 76 IQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAF-KGWLAE---EEIDPVSLLK 151 (241)
T ss_dssp EEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECC-TTCSSC---SCCCHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECchHhhChHHHHHHHHcCCcEEEEEEecCCEEEE-CCceec---CCCCHHHHHH
Confidence 66643 4567788899999999998753 223333332221 11111122221111 110000 0013333222
Q ss_pred hccccCCCceEEEeCCCC----eeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHH--hcc-cCeEEEec
Q 024251 126 LQPADGQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEAL--EQG-LGGIVLKV 190 (270)
Q Consensus 126 ~~~~~~~~~~vvv~~~DW----tiIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~L--E~G-~DGVvl~~ 190 (270)
.+.. ...+.+++...+- +-+.+|.+-.-.+..+..+++ .++++++++.+++.- -.| +|||++-.
T Consensus 152 ~~~~-~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgs 224 (241)
T 1qo2_A 152 RLKE-YGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGR 224 (241)
T ss_dssp HHHT-TTCCEEEEEETTHHHHTCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECH
T ss_pred HHHh-CCCCEEEEEeecccccCCcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeH
Confidence 2222 3467777755321 112344332222222446666 478889988876540 129 99999864
No 123
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=71.79 E-value=11 Score=33.96 Aligned_cols=107 Identities=10% Similarity=0.054 Sum_probs=61.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
.+.+..++|.|+|.+.+..++ .+..+.+. +.|.+ +.+.+.+.++...+.. ...|++++
T Consensus 78 ~~~~~~a~~~g~d~V~~~~g~p~~~i~~l~-----------------~~g~~--v~~~v~~~~~a~~~~~--~GaD~i~v 136 (332)
T 2z6i_A 78 EDIVDLVIEEGVKVVTTGAGNPSKYMERFH-----------------EAGII--VIPVVPSVALAKRMEK--IGADAVIA 136 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSSCGGGTHHHHH-----------------HTTCE--EEEEESSHHHHHHHHH--TTCSCEEE
T ss_pred HHHHHHHHHCCCCEEEECCCChHHHHHHHH-----------------HcCCe--EEEEeCCHHHHHHHHH--cCCCEEEE
Confidence 678999999999999987543 22222221 11333 3346778777555443 34789999
Q ss_pred eCC--CCe--eechhhhhhcccC-CCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 139 DLP--DWQ--VIPAENIVASFQG-SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 139 ~~~--DWt--iIPlENlIA~~q~-~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
++. +.. -.|.-.++.++.. .+..|++ .+.|++++..++ +.|+|||.+-+
T Consensus 137 ~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al---~~GAdgV~vGs 192 (332)
T 2z6i_A 137 EGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGF---MLGAEAVQVGT 192 (332)
T ss_dssp ECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH---HTTCSEEEECH
T ss_pred ECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH---HcCCCEEEecH
Confidence 653 111 1222234443321 1234544 356777766554 47999999864
No 124
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=71.61 E-value=12 Score=27.94 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=43.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-.........+.+|++..-.. ..--.++..+. .....|+..... .+......+++.|++|++.+|-++
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~ 111 (154)
T 2qsj_A 34 GAETVSDALAFLEADNTVDLILLDVNLPD-AEAIDGLVRLKRFDPSNAVALISGE-TDHELIRAALEAGADGFIPKSADP 111 (154)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEEEEC------CHHHHHHHHTTCCBBCCTTSCH
T ss_pred EecCHHHHHHHHhccCCCCEEEEeCCCCC-CchHHHHHHHHHhCCCCeEEEEeCC-CCHHHHHHHHHccCCEEEeCCCCH
Confidence 34565553333322134678888543211 11112333332 234566655444 445677889999999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 112 ~~L~~~ 117 (154)
T 2qsj_A 112 QVLIHA 117 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 125
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=71.61 E-value=9 Score=32.60 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=60.2
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~---------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
-.+++..+.+.|++.+.+...+ .+..+++.+- -+.++-+-.-+.+.++++.+...
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~----------------~~iPvi~~ggi~~~~~i~~~~~~ 95 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPL----------------TTLPIIASGGAGKMEHFLEAFLA 95 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGG----------------CCSCEEEESCCCSTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHh----------------cCCCEEEECCCCCHHHHHHHHHc
Confidence 4678899999999998875422 1222222211 12222222234677777766542
Q ss_pred cCCCceEEEeCCCC-eeechhhhhhcccCCC---ceEEEEcCC-------------------HHHHHHHHHHHhcccCeE
Q 024251 130 DGQAENIVIDLPDW-QVIPAENIVASFQGSG---KTVFAISKT-------------------PSEAQIFLEALEQGLGGI 186 (270)
Q Consensus 130 ~~~~~~vvv~~~DW-tiIPlENlIA~~q~~~---~~i~a~v~~-------------------~~eA~~~l~~LE~G~DGV 186 (270)
.++.+++-...- ..|+++.+...++..+ .+++..+.- ....+.+..+.+.|++.|
T Consensus 96 --Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i 173 (266)
T 2w6r_A 96 --GADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEI 173 (266)
T ss_dssp --TCSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEE
T ss_pred --CCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEE
Confidence 478888866665 4556566555443322 244333221 122344456678999999
Q ss_pred EEec
Q 024251 187 VLKV 190 (270)
Q Consensus 187 vl~~ 190 (270)
++..
T Consensus 174 ~~t~ 177 (266)
T 2w6r_A 174 LLTS 177 (266)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9854
No 126
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=71.53 E-value=9.6 Score=27.63 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=40.6
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-..-..-..++..+.. ....|+......+ ......+++.|+++++.+|-++.++.+.
T Consensus 54 ~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 121 (140)
T 3cg0_A 54 RPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQD-VETFQRAKRVNPFGYLAKPVAADTLHRS 121 (140)
T ss_dssp CCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCC-HHHHHHHHTTCCSEEEEESCCHHHHHHH
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCC-HHHHHHHHhcCCCEEEeCCCCHHHHHHH
Confidence 46788886543211122223333322 3456666555443 4456678899999999999999876543
No 127
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=71.43 E-value=9.4 Score=31.50 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=57.2
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
+.+.+..|++.|+|.+.++..+.+..+...+. |.++ .+.+.++++...+.. ...+++.+
T Consensus 69 ~~~~i~~a~~~Gad~V~~~~~~~~~~~~~~~~-----------------g~~~--~~g~~t~~e~~~a~~--~G~d~v~v 127 (212)
T 2v82_A 69 KPEQVDALARMGCQLIVTPNIHSEVIRRAVGY-----------------GMTV--CPGCATATEAFTALE--AGAQALKI 127 (212)
T ss_dssp SHHHHHHHHHTTCCEEECSSCCHHHHHHHHHT-----------------TCEE--ECEECSHHHHHHHHH--TTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHc-----------------CCCE--EeecCCHHHHHHHHH--CCCCEEEE
Confidence 45789999999999998776544444332222 1111 112567777554432 45788887
Q ss_pred eCCCCeeechhhhhhcccCC--CceEEEE--cCCHHHHHHHHHHHhcccCeEEEec
Q 024251 139 DLPDWQVIPAENIVASFQGS--GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~--~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
...+ ...+|.+-.-.+.. +..|++. ++ +++++.+ ++.|+|||++-+
T Consensus 128 ~~t~--~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~---~~~Ga~gv~vGs 177 (212)
T 2v82_A 128 FPSS--AFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQW---IDAGCAGAGLGS 177 (212)
T ss_dssp TTHH--HHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHH---HHHTCSEEEECT
T ss_pred ecCC--CCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHH---HHcCCCEEEECh
Confidence 2211 12233222111111 2456553 33 5555544 557999999764
No 128
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=71.23 E-value=11 Score=35.02 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=62.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcc--h----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCC
Q 024251 60 KQVMTAAVERGWNTFVFLSEN--Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~--~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~ 133 (270)
.+.+..++|.|+|.+++...+ . +.++++.+. -+.++.. ..+.++++.+.+.. ..+
T Consensus 107 ~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~----------------~~~~Viv-g~v~t~e~A~~l~~--aGa 167 (361)
T 3khj_A 107 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK----------------MNIDVIV-GNVVTEEATKELIE--NGA 167 (361)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHH----------------CCCEEEE-EEECSHHHHHHHHH--TTC
T ss_pred HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHh----------------cCCcEEE-ccCCCHHHHHHHHH--cCc
Confidence 688999999999988874321 1 122211111 0112111 25678887665554 467
Q ss_pred ceEEEeC-----------CCCeeec----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 134 ENIVIDL-----------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 134 ~~vvv~~-----------~DWtiIP----lENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
|.|++-. .+|. .| +.++...++..+..|++ .+.+++++..++ +.|+|||++-+.
T Consensus 168 D~I~VG~~~Gs~~~tr~~~g~g-~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kal---a~GAd~V~vGs~ 238 (361)
T 3khj_A 168 DGIKVGIGPGSICTTRIVAGVG-VPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKAL---AVGASSVMIGSI 238 (361)
T ss_dssp SEEEECSSCCTTCCHHHHTCBC-CCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHH---HHTCSEEEESTT
T ss_pred CEEEEecCCCcCCCcccccCCC-CCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHH---HcCCCEEEEChh
Confidence 8888821 1221 23 22332222222456888 578898877664 569999998765
No 129
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=70.89 E-value=26 Score=25.03 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=45.9
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
..+.++.-..... ...+.++++..-... .--.++..+. .....++...... +......+++.|++|.+.+|-++.
T Consensus 33 ~~~~~~~~~~~~~-~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~~~~ 109 (126)
T 1dbw_A 33 HQSAEAFLAFAPD-VRNGVLVTDLRMPDM-SGVELLRNLGDLKINIPSIVITGHG-DVPMAVEAMKAGAVDFIEKPFEDT 109 (126)
T ss_dssp ESCHHHHHHHGGG-CCSEEEEEECCSTTS-CHHHHHHHHHHTTCCCCEEEEECTT-CHHHHHHHHHTTCSEEEESSCCHH
T ss_pred eCCHHHHHHHHhc-CCCCEEEEECCCCCC-CHHHHHHHHHhcCCCCCEEEEECCC-CHHHHHHHHHhCHHHheeCCCCHH
Confidence 4555543332222 346777876543221 2222333332 2345566555443 345667889999999999999998
Q ss_pred HHHHH
Q 024251 195 AVLAL 199 (270)
Q Consensus 195 ~v~~l 199 (270)
++.+.
T Consensus 110 ~l~~~ 114 (126)
T 1dbw_A 110 VIIEA 114 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 130
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=70.88 E-value=19 Score=32.51 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=70.3
Q ss_pred chhHHHHHHHhCCcEEEEcCc------chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC
Q 024251 59 SKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~------~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~ 132 (270)
--++.....+.|++++=+-.+ +.+..++..+.-- -|+..+|. |.++.++.++.. ..
T Consensus 81 p~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~-lPVl~Kdf---------------i~d~~qi~ea~~--~G 142 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACS-LPALRKDF---------------LFDPYQVYEARS--WG 142 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSS-SCEEEESC---------------CCSTHHHHHHHH--TT
T ss_pred HHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcC-CCEEECCc---------------cCCHHHHHHHHH--cC
Confidence 356777777889998755322 1222222211100 13332321 356666666543 46
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
++.|++....-+-=-|+.++..+..-+-.++++++|.+|++.+ ++.|+|=|-+..+|
T Consensus 143 AD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A---~~~ga~iIGinnr~ 199 (272)
T 3tsm_A 143 ADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERA---LKLSSRLLGVNNRN 199 (272)
T ss_dssp CSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHH---TTSCCSEEEEECBC
T ss_pred CCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH---HhcCCCEEEECCCC
Confidence 7888887776544447788877777778999999999998655 57899977666554
No 131
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=70.83 E-value=28 Score=27.64 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=46.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.++++..-+..=-+ .++..+. .....|+...... +......+++.|++|.+.+|-++
T Consensus 36 ~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~-~~~~~lr~~~~~~~ii~ls~~~-~~~~~~~~~~~Ga~~~l~Kp~~~ 112 (215)
T 1a04_A 36 EASNGEQGIELAES-LDPDLILLDLNMPGMNGL-ETLDKLREKSLSGRIVVFSVSN-HEEDVVTALKRGADGYLLKDMEP 112 (215)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEETTSTTSCHH-HHHHHHHHSCCCSEEEEEECCC-CHHHHHHHHHTTCSEEEETTCCH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeCCCCCCcHH-HHHHHHHHhCCCCcEEEEECCC-CHHHHHHHHHcCCcEEEeCCCCH
Confidence 44565543332222 346888886653322112 2233222 2345565554443 23456788899999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 113 ~~L~~~ 118 (215)
T 1a04_A 113 EDLLKA 118 (215)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 132
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=70.83 E-value=12 Score=30.77 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=15.1
Q ss_pred hHHHHHHHhCCcEEEEcC
Q 024251 61 QVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 61 e~vT~ALEsG~d~~vv~~ 78 (270)
+.+..+++.|+|.+.+..
T Consensus 75 ~~i~~~~~~gad~v~vh~ 92 (220)
T 2fli_A 75 RYVEAFAQAGADIMTIHT 92 (220)
T ss_dssp GGHHHHHHHTCSEEEEEG
T ss_pred HHHHHHHHcCCCEEEEcc
Confidence 356999999999998854
No 133
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=70.71 E-value=3.5 Score=35.62 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=54.8
Q ss_pred HHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC-hhhhhhhccccCCCceEEEeC--
Q 024251 64 TAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIVIDL-- 140 (270)
Q Consensus 64 T~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~-~ed~e~~~~~~~~~~~vvv~~-- 140 (270)
..|.+.|+|+++++....+...++-.. .+..|.+....+...+ .+.++.+.... .+++.+..
T Consensus 112 ~~a~~aGadgv~v~d~~~~~~~~~~~~-------------~~~~g~~~i~~~a~~t~~e~~~~~~~~~--~g~v~~~s~~ 176 (262)
T 1rd5_A 112 AKMKEAGVHGLIVPDLPYVAAHSLWSE-------------AKNNNLELVLLTTPAIPEDRMKEITKAS--EGFVYLVSVN 176 (262)
T ss_dssp HHHHHTTCCEEECTTCBTTTHHHHHHH-------------HHHTTCEECEEECTTSCHHHHHHHHHHC--CSCEEEECSS
T ss_pred HHHHHcCCCEEEEcCCChhhHHHHHHH-------------HHHcCCceEEEECCCCCHHHHHHHHhcC--CCeEEEecCC
Confidence 349999999999876433222222111 1222333333333333 33434444332 24555432
Q ss_pred --CCC--eeec-hhhhhhcccCC-CceE--EEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 141 --PDW--QVIP-AENIVASFQGS-GKTV--FAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 141 --~DW--tiIP-lENlIA~~q~~-~~~i--~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
.+- ...| ...+++.+... +..| ...+++++.++. +++.|+|||++-+
T Consensus 177 G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~---~~~~GAdgvvVGS 231 (262)
T 1rd5_A 177 GVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQ---IAQWGADGVIIGS 231 (262)
T ss_dssp CCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHH---HHHTTCSEEEECH
T ss_pred CCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHH---HHHcCCCEEEECh
Confidence 111 2222 34566655421 2234 345677777766 4568999999865
No 134
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=70.12 E-value=23 Score=25.15 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=46.5
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... .+.+.++++..-.. ..--.++..+. .....++...... +......+++.|++|.+.+|-++
T Consensus 32 ~~~~~~~a~~~~~~-~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~ 108 (124)
T 1srr_A 32 QAANGLQALDIVTK-ERPDLVLLDMKIPG-MDGIEILKRMKVIDENIRVIIMTAYG-ELDMIQESKELGALTHFAKPFDI 108 (124)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCTT-CCHHHHHHHHHHHCTTCEEEEEESSC-CHHHHHHHHHHTCCCEEESSCCH
T ss_pred EeCCHHHHHHHHhc-cCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCCEEEEEccC-chHHHHHHHhcChHhhccCCCCH
Confidence 34555543332222 35688888654322 12222333332 2345666555443 34456788899999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 109 ~~l~~~ 114 (124)
T 1srr_A 109 DEIRDA 114 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 135
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=69.75 E-value=13 Score=26.67 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=36.1
Q ss_pred CCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC-CHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~-d~~~v~~l 199 (270)
+.+.++++..-...=.+ .++..+. .....++...... +.....++++.|++|++.+|- +++++.+.
T Consensus 51 ~~dlvi~d~~l~~~~g~-~~~~~l~~~~~~~~ii~~t~~~-~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~ 119 (130)
T 3eod_A 51 TPDLMICDIAMPRMNGL-KLLEHIRNRGDQTPVLVISATE-NMADIAKALRLGVEDVLLKPVKDLNRLREM 119 (130)
T ss_dssp CCSEEEECCC-----CH-HHHHHHHHTTCCCCEEEEECCC-CHHHHHHHHHHCCSEEEESCC---CHHHHH
T ss_pred CCCEEEEecCCCCCCHH-HHHHHHHhcCCCCCEEEEEcCC-CHHHHHHHHHcCCCEEEeCCCCcHHHHHHH
Confidence 46778885442221111 2222222 2345666555544 334556788999999999998 78766554
No 136
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=69.47 E-value=29 Score=29.43 Aligned_cols=69 Identities=16% Similarity=0.011 Sum_probs=33.1
Q ss_pred CCceEEEeCCC----CeeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC---CHHHHHHHHHh
Q 024251 132 QAENIVIDLPD----WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEY 202 (270)
Q Consensus 132 ~~~~vvv~~~D----WtiIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~~~ 202 (270)
..+.+++...+ -+-+.+|.+-.-.+..+..+++ .++++++++.++ +.|+|||++-.- .+..+.+++++
T Consensus 169 G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~---~~Gadgv~vgsal~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 169 GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF---LAGADAALAASVFHFREIDMRELKEY 245 (266)
T ss_dssp TCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH---HHTCSEEEESTTTC------------
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH---HcCCHHHHccHHHHcCCCCHHHHHHH
Confidence 46777774321 1123344332222222445665 478889988876 469999999764 33345555555
Q ss_pred h
Q 024251 203 F 203 (270)
Q Consensus 203 ~ 203 (270)
+
T Consensus 246 l 246 (266)
T 2w6r_A 246 L 246 (266)
T ss_dssp -
T ss_pred H
Confidence 5
No 137
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=68.99 E-value=7.5 Score=32.94 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=62.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcch-hh-hhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccC---CC
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQ-QL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG---QA 133 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~-e~-a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~---~~ 133 (270)
..+.+..+++.|+|++.+..+.- +. .+.+.. +.+.|++++..+.-.++ ++.+..... ..
T Consensus 76 ~~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~--------------i~~~g~~igv~~~p~t~--~e~~~~~~~~~~~~ 139 (228)
T 1h1y_A 76 PSDYVEPLAKAGASGFTFHIEVSRDNWQELIQS--------------IKAKGMRPGVSLRPGTP--VEEVFPLVEAENPV 139 (228)
T ss_dssp GGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHH--------------HHHTTCEEEEEECTTSC--GGGGHHHHHSSSCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccHHHHHHHH--------------HHHcCCCEEEEEeCCCC--HHHHHHHHhcCCCC
Confidence 34569999999999998876421 11 111111 12336666644332333 233333333 67
Q ss_pred ceEEEeCC---------CCeeechhhhhhcccC--CCceEE--EEcCCHHHHHHHHHHHhcccCeEEEe-----cCCH-H
Q 024251 134 ENIVIDLP---------DWQVIPAENIVASFQG--SGKTVF--AISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-K 194 (270)
Q Consensus 134 ~~vvv~~~---------DWtiIPlENlIA~~q~--~~~~i~--a~v~~~~eA~~~l~~LE~G~DGVvl~-----~~d~-~ 194 (270)
|++.+... +|+. ++.+ +++.. .+..|+ ..++. +.++ ++++.|+||+++- .+|+ .
T Consensus 140 d~vl~~sv~pg~~g~~~~~~~--l~~i-~~~~~~~~~~pi~v~GGI~~-~ni~---~~~~aGaD~vvvGsai~~~~d~~~ 212 (228)
T 1h1y_A 140 ELVLVMTVEPGFGGQKFMPEM--MEKV-RALRKKYPSLDIEVDGGLGP-STID---VAASAGANCIVAGSSIFGAAEPGE 212 (228)
T ss_dssp SEEEEESSCTTCSSCCCCGGG--HHHH-HHHHHHCTTSEEEEESSCST-TTHH---HHHHHTCCEEEESHHHHTSSCHHH
T ss_pred CEEEEEeecCCCCcccCCHHH--HHHH-HHHHHhcCCCCEEEECCcCH-HHHH---HHHHcCCCEEEECHHHHCCCCHHH
Confidence 89988432 2332 3322 21110 022333 33443 4443 3455599999975 3476 4
Q ss_pred HHHHHHHhhc
Q 024251 195 AVLALKEYFD 204 (270)
Q Consensus 195 ~v~~l~~~~~ 204 (270)
.+++|++.++
T Consensus 213 ~~~~l~~~~~ 222 (228)
T 1h1y_A 213 VISALRKSVE 222 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4666666553
No 138
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=68.87 E-value=9.5 Score=27.86 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=38.7
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
..+.++++..-...=.+ .++..+.. ....++...... +......+++.|+++++.+|-++.++..
T Consensus 59 ~~dlvi~D~~l~~~~g~-~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~L~~ 125 (135)
T 3snk_A 59 RPGIVILDLGGGDLLGK-PGIVEARALWATVPLIAVSDEL-TSEQTRVLVRMNASDWLHKPLDGKELLN 125 (135)
T ss_dssp CCSEEEEEEETTGGGGS-TTHHHHHGGGTTCCEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEeCCCCCchHH-HHHHHHHhhCCCCcEEEEeCCC-CHHHHHHHHHcCcHhhccCCCCHHHHHH
Confidence 46778886543221111 12222221 245566555443 3345677899999999999999987654
No 139
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=68.25 E-value=6.6 Score=35.67 Aligned_cols=41 Identities=12% Similarity=-0.071 Sum_probs=35.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhhc
Q 024251 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 161 ~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (270)
+|..++.+.+||+.+ ++.|+|.|+|+.-+++++++..+.+.
T Consensus 196 ~I~Vev~t~eea~ea---l~aGaD~I~LDn~~~~~~~~~v~~l~ 236 (284)
T 1qpo_A 196 PCEVEVDSLEQLDAV---LPEKPELILLDNFAVWQTQTAVQRRD 236 (284)
T ss_dssp CEEEEESSHHHHHHH---GGGCCSEEEEETCCHHHHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 899999999888765 55799999999999999888777664
No 140
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=68.21 E-value=17 Score=29.93 Aligned_cols=49 Identities=27% Similarity=0.209 Sum_probs=29.9
Q ss_pred CCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
..+.+.+...+. +++.+...+. . ..+-..+.+++|++. +.+.|+|.|++
T Consensus 94 gad~v~l~~~~~---~~~~~~~~~g-~-~~~~~s~~t~~e~~~---a~~~g~d~v~~ 142 (227)
T 2tps_A 94 KADGIHIGQEDA---NAKEVRAAIG-D-MILGVSAHTMSEVKQ---AEEDGADYVGL 142 (227)
T ss_dssp TCSEEEECTTSS---CHHHHHHHHT-T-SEEEEEECSHHHHHH---HHHHTCSEEEE
T ss_pred CCCEEEECCCcc---CHHHHHHhcC-C-cEEEEecCCHHHHHH---HHhCCCCEEEE
Confidence 467787754443 3444444332 2 234444688988654 55789999996
No 141
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=68.10 E-value=6 Score=33.43 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=55.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhh-hhhhccccCCCc-eEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE-LQQLQPADGQAE-NIV 137 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed-~e~~~~~~~~~~-~vv 137 (270)
.+.+..+++.|+|.++++....+..+++-+. .+..|.++...+...++.+ ++.+... .+ ++.
T Consensus 98 ~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~ 161 (248)
T 1geq_A 98 RNFLAEAKASGVDGILVVDLPVFHAKEFTEI-------------AREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVY 161 (248)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGHHHHHHH-------------HHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEE
T ss_pred HHHHHHHHHCCCCEEEECCCChhhHHHHHHH-------------HHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEE
Confidence 5899999999999999986432222222111 0111333333332333332 2222221 33 543
Q ss_pred E-eCC---CCe--eech-hhhhhcccCC-CceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 138 I-DLP---DWQ--VIPA-ENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 138 v-~~~---DWt--iIPl-ENlIA~~q~~-~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+ ... +-+ ..|. .+.+.++.+. +..|++ .+++.++++.++ +.|+|||++-+.
T Consensus 162 ~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~---~~Gad~vivGsa 222 (248)
T 1geq_A 162 LVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLL---KEGANGVVVGSA 222 (248)
T ss_dssp EECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH---HTTCSEEEECHH
T ss_pred EEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHH---HcCCCEEEEcHH
Confidence 3 221 111 2231 2344444321 234544 578888887754 579999998753
No 142
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=67.65 E-value=18 Score=28.97 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=48.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
...+.++.-..... ...+.++++..-...=-+ .++..+.. ....++...... +......+++.|++|.+.+|-++.
T Consensus 33 ~~~~~~~al~~~~~-~~~dlvllD~~l~~~~g~-~~~~~l~~~~~~~ii~lt~~~-~~~~~~~~~~~ga~~~l~Kp~~~~ 109 (230)
T 2oqr_A 33 VVTDGPAALAEFDR-AGADIVLLDLMLPGMSGT-DVCKQLRARSSVPVIMVTARD-SEIDKVVGLELGADDYVTKPYSAR 109 (230)
T ss_dssp EECSHHHHHHHHHH-HCCSEEEEESSCSSSCHH-HHHHHHHHHCSCSEEEEECCH-HHHHHHHHHHHCCSCCCCSSCCHH
T ss_pred EECCHHHHHHHHhc-cCCCEEEEECCCCCCCHH-HHHHHHHcCCCCCEEEEeCCC-cHHHHHHHHHcCCCEEEeCCCCHH
Confidence 34565543332222 346888887653332122 22332221 345677666554 455677899999999999999998
Q ss_pred HHHHH
Q 024251 195 AVLAL 199 (270)
Q Consensus 195 ~v~~l 199 (270)
++.+.
T Consensus 110 ~l~~~ 114 (230)
T 2oqr_A 110 ELIAR 114 (230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 143
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=67.48 E-value=17 Score=25.78 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=46.2
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.++.-.... ....+.++++..-... .--.++..+.. ....++...... +......+++.|++|.+.+|-
T Consensus 31 ~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~ 107 (127)
T 2jba_A 31 EAEDYDSAVNQLN-EPWPDLILLAWMLPGG-SGIQFIKHLRRESMTRDIPVVMLTARG-EEEDRVRGLETGADDCITKPF 107 (127)
T ss_dssp EECSHHHHHTTCS-SSCCSEEEEESEETTE-EHHHHHHHHHTSTTTTTSCEEEEEETT-HHHHHHTTCCCSCSEEEEESC
T ss_pred EeCCHHHHHHHHh-ccCCCEEEEecCCCCC-CHHHHHHHHHhCcccCCCCEEEEeCCC-CHHHHHHHHhcCCCeEEeCCC
Confidence 3455544332222 1346778875432221 22234554433 345666555443 345667899999999999999
Q ss_pred CHHHHHH
Q 024251 192 DVKAVLA 198 (270)
Q Consensus 192 d~~~v~~ 198 (270)
+++++.+
T Consensus 108 ~~~~l~~ 114 (127)
T 2jba_A 108 SPKELVA 114 (127)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9987654
No 144
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=67.35 E-value=21 Score=29.81 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=21.4
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc
Q 024251 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 52 ~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+++-- .+.+.+..+++.|+|.+++..+
T Consensus 76 pv~v~ggi~~~~~~~~~l~~Gad~V~lg~~ 105 (244)
T 2y88_A 76 QVELSGGIRDDESLAAALATGCARVNVGTA 105 (244)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEECch
Confidence 466632 3567799999999999998764
No 145
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=67.26 E-value=50 Score=27.62 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=21.5
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc
Q 024251 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 52 ~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+++-. .+.+.+..+++.|+|.+++...
T Consensus 76 pvi~~ggI~~~~~~~~~~~~Gad~V~lg~~ 105 (253)
T 1thf_D 76 PFTVGGGIHDFETASELILRGADKVSINTA 105 (253)
T ss_dssp CEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred CEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 366643 3567799999999999999764
No 146
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=67.04 E-value=22 Score=25.38 Aligned_cols=66 Identities=8% Similarity=0.140 Sum_probs=40.8
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-.. ..-..++..+.. ....++..... .+......+++.|++|.+.+|-+++++.+.
T Consensus 51 ~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (129)
T 1p6q_A 51 PHHLVISDFNMPK-MDGLGLLQAVRANPATKKAAFIILTAQ-GDRALVQKAAALGANNVLAKPFTIEKMKAA 120 (129)
T ss_dssp CCSEEEECSSSCS-SCHHHHHHHHTTCTTSTTCEEEECCSC-CCHHHHHHHHHHTCSCEECCCSSHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhcCccccCCCEEEEeCC-CCHHHHHHHHHcCCCEEEECCCCHHHHHHH
Confidence 4677877544222 122234555543 24456655444 334456788899999999999999876543
No 147
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=66.89 E-value=33 Score=24.66 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=40.3
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
.+.+.++++..-+.. .--.++..+.. .+..|+...... +......+++.|+++.+.+|-+++++.+
T Consensus 45 ~~~dlvllD~~~p~~-~g~~~~~~l~~~~~~~~~pii~~s~~~-~~~~~~~~~~~Ga~~~l~KP~~~~~L~~ 114 (122)
T 3gl9_A 45 FTPDLIVLXIMMPVM-DGFTVLKKLQEKEEWKRIPVIVLTAKG-GEEDESLALSLGARKVMRKPFSPSQFIE 114 (122)
T ss_dssp BCCSEEEECSCCSSS-CHHHHHHHHHTSTTTTTSCEEEEESCC-SHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred cCCCEEEEeccCCCC-cHHHHHHHHHhcccccCCCEEEEecCC-chHHHHHHHhcChhhhccCCCCHHHHHH
Confidence 346788885543322 12234444432 245566555433 3344567899999999999999987654
No 148
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=66.77 E-value=7.1 Score=33.62 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=27.7
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+-+.+++|| .+++.+...++.|+|+|+.+..
T Consensus 208 ~~G~~v~~WTvn~~~~~~~l~~~GVdgIiTD~P 240 (252)
T 3qvq_A 208 AAGYKVLAFTINDESLALKLYNQGLDAVFSDYP 240 (252)
T ss_dssp HTTCEEEEECCCCHHHHHHHHHTTCCEEEESSH
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCH
Confidence 4667899999 6799999999999999998653
No 149
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=66.66 E-value=8.9 Score=34.26 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=38.1
Q ss_pred hhhhhcccCCCceEEEE-cCCHH-------HHHHHHHHHhcccCeEEEecCCHHHHHHHH
Q 024251 149 ENIVASFQGSGKTVFAI-SKTPS-------EAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (270)
Q Consensus 149 ENlIA~~q~~~~~i~a~-v~~~~-------eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~ 200 (270)
..+|++++..+-+|++- +++.+ +.+.+-..++.|+|||. ||+|..+.++.
T Consensus 218 ~~~V~~ah~~G~~V~vWTv~t~d~~~~~~~~~~~~~~L~~~GVDgIi--TD~P~~l~~~L 275 (292)
T 3mz2_A 218 REVIDMLHERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIE--SDRPIEVAEAI 275 (292)
T ss_dssp HHHHHHHHHTTBCEEEECTTTGGGSSSHHHHHHHHHHHHHTTCCEEE--ESCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCcchhhhccccHHHHHHHHHcCCCEEE--eCCHHHHHHHH
Confidence 56888888888888875 56654 25677788899999987 88998665543
No 150
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=66.31 E-value=23 Score=29.74 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=21.8
Q ss_pred cEEEEEe--CchhHHHHHHHhCCcEEEEcCc
Q 024251 51 KRVWIWT--ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 51 K~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
..+++-- .+.+.+..+++.|+|.+++..+
T Consensus 76 ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~ 106 (244)
T 1vzw_A 76 IKVELSGGIRDDDTLAAALATGCTRVNLGTA 106 (244)
T ss_dssp SEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred CcEEEECCcCCHHHHHHHHHcCCCEEEECch
Confidence 3466643 3567799999999999998764
No 151
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=66.25 E-value=4.8 Score=34.65 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=65.4
Q ss_pred hhHHHHHHHhCCcEEEEcCc--chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEE
Q 024251 60 KQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~--~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
.+.+..|++.|+|++.+..+ .-+...+.- ..+.+.|+.+|..+.-.++.+ .+.......|+|.
T Consensus 75 ~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~-------------~~i~~~g~~~gv~~~p~t~~e--~~~~~~~~~D~v~ 139 (230)
T 1tqj_A 75 EKYVEDFAKAGADIISVHVEHNASPHLHRTL-------------CQIRELGKKAGAVLNPSTPLD--FLEYVLPVCDLIL 139 (230)
T ss_dssp GGTHHHHHHHTCSEEEEECSTTTCTTHHHHH-------------HHHHHTTCEEEEEECTTCCGG--GGTTTGGGCSEEE
T ss_pred HHHHHHHHHcCCCEEEECcccccchhHHHHH-------------HHHHHcCCcEEEEEeCCCcHH--HHHHHHhcCCEEE
Confidence 44679999999999998876 211111111 112344777777664455533 3333344678887
Q ss_pred EeCCCC-----eeec--hhhhhhcccCC------CceE--EEEcCCHHHHHHHHHHHhcccCeEEEe-----cCCHH-HH
Q 024251 138 IDLPDW-----QVIP--AENIVASFQGS------GKTV--FAISKTPSEAQIFLEALEQGLGGIVLK-----VEDVK-AV 196 (270)
Q Consensus 138 v~~~DW-----tiIP--lENlIA~~q~~------~~~i--~a~v~~~~eA~~~l~~LE~G~DGVvl~-----~~d~~-~v 196 (270)
+-.-.. +.+| +|.| +++... +..| ...++. +. +-.+.+.|+||+++- .+|+. .+
T Consensus 140 ~msv~pg~ggq~~~~~~~~~i-~~lr~~~~~~~~~~~I~v~GGI~~-~~---~~~~~~aGad~vvvGSai~~a~d~~~~~ 214 (230)
T 1tqj_A 140 IMSVNPGFGGQSFIPEVLPKI-RALRQMCDERGLDPWIEVDGGLKP-NN---TWQVLEAGANAIVAGSAVFNAPNYAEAI 214 (230)
T ss_dssp EESSCC----CCCCGGGHHHH-HHHHHHHHHHTCCCEEEEESSCCT-TT---THHHHHHTCCEEEESHHHHTSSCHHHHH
T ss_pred EEEeccccCCccCcHHHHHHH-HHHHHHHHhcCCCCcEEEECCcCH-HH---HHHHHHcCCCEEEECHHHHCCCCHHHHH
Confidence 643322 2343 4433 222111 2233 233443 33 344567899999975 34664 45
Q ss_pred HHHHHhh
Q 024251 197 LALKEYF 203 (270)
Q Consensus 197 ~~l~~~~ 203 (270)
++|++.+
T Consensus 215 ~~l~~~~ 221 (230)
T 1tqj_A 215 AGVRNSK 221 (230)
T ss_dssp HHHHTCC
T ss_pred HHHHHHH
Confidence 5555433
No 152
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=66.21 E-value=28 Score=28.71 Aligned_cols=114 Identities=24% Similarity=0.220 Sum_probs=64.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeee-e-cCCccccCCCCeEEEEEEec-ChhhhhhhccccCCCceE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLF-I-KEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENI 136 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~-~-~~g~~~~~~gk~v~~~v~V~-~~ed~e~~~~~~~~~~~v 136 (270)
.+++..+.+.|++.+.+.. .+..+++.+..-+ |+. . ..+ .++.+. .|. +.++++.+.. ..++.+
T Consensus 26 ~~~a~~~~~~Ga~~i~~~~--~~~i~~i~~~~~~-pv~~~~~~~--~~~~~~------~i~~~~~~i~~~~~--~Gad~v 92 (223)
T 1y0e_A 26 SKMALAAYEGGAVGIRANT--KEDILAIKETVDL-PVIGIVKRD--YDHSDV------FITATSKEVDELIE--SQCEVI 92 (223)
T ss_dssp HHHHHHHHHHTCSEEEEES--HHHHHHHHHHCCS-CEEEECBCC--CTTCCC------CBSCSHHHHHHHHH--HTCSEE
T ss_pred HHHHHHHHHCCCeeeccCC--HHHHHHHHHhcCC-CEEeeeccC--CCcccc------ccCCcHHHHHHHHh--CCCCEE
Confidence 6788888999999987753 3444444332111 211 0 000 000011 112 3344444433 356888
Q ss_pred EEeCCCCee--echhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 137 VIDLPDWQV--IPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 137 vv~~~DWti--IPlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
.+....=.- .+++.++..+... +..++..+.+++|++. +.+.|+|.|.+.
T Consensus 93 ~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t~~e~~~---~~~~G~d~i~~~ 146 (223)
T 1y0e_A 93 ALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKN---AARLGFDYIGTT 146 (223)
T ss_dssp EEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHH---HHHTTCSEEECT
T ss_pred EEeeecccCcccCHHHHHHHHHHhCCCceEEecCCCHHHHHH---HHHcCCCEEEeC
Confidence 886654211 3456666665544 5678889999999765 678999999864
No 153
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=66.17 E-value=9.5 Score=31.21 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=45.8
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
...+.++.-..... ...+.++++..-...=-+ .++..+.. ....|+......+ ......+++.|++|.+.+|-++.
T Consensus 34 ~~~~~~~al~~l~~-~~~dlvilD~~l~~~~g~-~~~~~lr~~~~~~ii~lt~~~~-~~~~~~~~~~Ga~~~l~Kp~~~~ 110 (238)
T 2gwr_A 34 VIGDGTQALTAVRE-LRPDLVLLDLMLPGMNGI-DVCRVLRADSGVPIVMLTAKTD-TVDVVLGLESGADDYIMKPFKPK 110 (238)
T ss_dssp EECCGGGHHHHHHH-HCCSEEEEESSCSSSCHH-HHHHHHHTTCCCCEEEEEETTC-CSCHHHHHHTTCCEEEEESCCHH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHH-HHHHHHHhCCCCcEEEEeCCCC-HHHHHHHHHCCCCEEEeCCCCHH
Confidence 34555443332222 346888887653322122 23333332 2445555444332 33456778999999999999998
Q ss_pred HHHHHH
Q 024251 195 AVLALK 200 (270)
Q Consensus 195 ~v~~l~ 200 (270)
++.+.-
T Consensus 111 ~L~~~i 116 (238)
T 2gwr_A 111 ELVARV 116 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 154
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=66.06 E-value=8.1 Score=32.53 Aligned_cols=115 Identities=10% Similarity=0.043 Sum_probs=61.2
Q ss_pred eCchhHHHHHHHhCCcEEEEcCcchhhh-----hhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccC
Q 024251 57 TESKQVMTAAVERGWNTFVFLSENQQLA-----IDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (270)
Q Consensus 57 ~~~Ke~vT~ALEsG~d~~vv~~~~~e~a-----~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~ 131 (270)
.+-.++...+.+.|++.+-+...+.... ..+.++.. .-+.++-+-.-|.++++.+.+...
T Consensus 32 ~d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~~~i~~i~~-------------~~~ipv~v~ggI~~~~~~~~~l~~-- 96 (244)
T 1vzw_A 32 GSPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQ-------------AMDIKVELSGGIRDDDTLAAALAT-- 96 (244)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCHHHHHHHHH-------------HCSSEEEEESSCCSHHHHHHHHHT--
T ss_pred CCHHHHHHHHHHcCCCEEEEecCchhhcCCChHHHHHHHHH-------------hcCCcEEEECCcCCHHHHHHHHHc--
Confidence 3456788889999999987654222111 11111111 011222222235678887776653
Q ss_pred CCceEEEeCCCCeeec--hhhhhhcccCCCceEEEEcC----------------CHHHHHHHHHHHhcccCeEEEecCC
Q 024251 132 QAENIVIDLPDWQVIP--AENIVASFQGSGKTVFAISK----------------TPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIP--lENlIA~~q~~~~~i~a~v~----------------~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
.++.|++....-+- | ++.++..+. .+++..++ ++.| .+..+++.|+|.|++.+.+
T Consensus 97 Gad~V~lg~~~l~~-p~~~~~~~~~~g---~~~~~~l~~~~g~v~~~g~~~~~~~~~e--~~~~~~~~G~~~i~~~~~~ 169 (244)
T 1vzw_A 97 GCTRVNLGTAALET-PEWVAKVIAEHG---DKIAVGLDVRGTTLRGRGWTRDGGDLYE--TLDRLNKEGCARYVVTDIA 169 (244)
T ss_dssp TCSEEEECHHHHHC-HHHHHHHHHHHG---GGEEEEEEEETTEECCSSSCCCCCBHHH--HHHHHHHTTCCCEEEEEC-
T ss_pred CCCEEEECchHhhC-HHHHHHHHHHcC---CcEEEEEEccCCEEEEcCcccCCCCHHH--HHHHHHhCCCCEEEEeccC
Confidence 47888884432111 2 566666553 23332222 3333 3455667899999987643
No 155
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=65.95 E-value=31 Score=25.05 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=41.1
Q ss_pred CCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
+.+.++++..-.. +.--.++..+. .....|+......+ ......+++.|++|.+.+|-++.++.+.
T Consensus 49 ~~dlvilD~~lp~-~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~~~~~ga~~~l~Kp~~~~~L~~~ 116 (133)
T 3b2n_A 49 NPNVVILDIEMPG-MTGLEVLAEIRKKHLNIKVIIVTTFKR-PGYFEKAVVNDVDAYVLKERSIEELVET 116 (133)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHHHTTCSCEEEEEESCCC-HHHHHHHHHTTCSEEEETTSCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHHHCCCCcEEEEecCCC-HHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 4678888554322 22223333332 23456666655443 3456788899999999999999877553
No 156
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=65.14 E-value=9 Score=30.67 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=17.5
Q ss_pred chhHHHHHHHhCCcEEEEcC
Q 024251 59 SKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~ 78 (270)
..+.+..|++.|++.++..+
T Consensus 64 ~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 64 QQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp THHHHHHHHHTTCCEEEESH
T ss_pred CHHHHHHHHHCCHHheEeCC
Confidence 47888999999999999875
No 157
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=64.67 E-value=8.2 Score=33.07 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
...+.+++|| .+++.+...++.|+|+|+.+.
T Consensus 194 ~~G~~v~~WTVn~~~~~~~l~~~GVdgIiTD~ 225 (238)
T 3no3_A 194 VLGMTSNVWTVDDPKLMEEMIDMGVDFITTDL 225 (238)
T ss_dssp HTTCEEEEECCCSHHHHHHHHHHTCSEEEESC
T ss_pred HCCCEEEEECCCCHHHHHHHHHcCCCEEECCC
Confidence 4667899999 578999999999999999865
No 158
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=64.41 E-value=7.6 Score=34.84 Aligned_cols=116 Identities=7% Similarity=0.039 Sum_probs=61.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEec-ChhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~-~~ed~e~~~~~~~~~~~vv 137 (270)
-...+..|-|.|+|++|+++=-.|...++.+. .+..|.....++.-+ +.+.++.++......=|.+
T Consensus 105 ~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~-------------~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~V 171 (252)
T 3tha_A 105 LEKFVKKAKSLGICALIVPELSFEESDDLIKE-------------CERYNIALITLVSVTTPKERVKKLVKHAKGFIYLL 171 (252)
T ss_dssp HHHHHHHHHHTTEEEEECTTCCGGGCHHHHHH-------------HHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH-------------HHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEE
Confidence 46789999999999999985212222222222 112233322333333 3555555555432222332
Q ss_pred Ee--CCCCe-ee--chhhhhhcccCC-CceE--EEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 138 ID--LPDWQ-VI--PAENIVASFQGS-GKTV--FAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 138 v~--~~DWt-iI--PlENlIA~~q~~-~~~i--~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
-. .++-+ -+ +++++++.+... +..+ -..++++++|+.+ . .++|||++-+.
T Consensus 172 s~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~---~-~~ADGVIVGSA 229 (252)
T 3tha_A 172 ASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRM---R-KVADGVIVGTS 229 (252)
T ss_dssp CCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHH---T-TTSSEEEECHH
T ss_pred ecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHH---H-hcCCEEEECHH
Confidence 21 11221 22 256777765443 2233 3357789998854 3 36999998763
No 159
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=64.22 E-value=16 Score=33.23 Aligned_cols=53 Identities=17% Similarity=0.006 Sum_probs=39.4
Q ss_pred chhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 147 PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 147 PlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
|++..-+.+ +...+|..++.|.+||+.+ ++.|+|.|+|.+=++.++++..+.+
T Consensus 185 av~~ar~~~-~~~~~IgVev~t~eea~eA---~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 185 AVRRAKARA-PHYLKVEVEVRSLEELEEA---LEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp HHHHHHHHS-CTTSCEEEEESSHHHHHHH---HHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCEEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 444444433 2334788999999998765 5679999999999999888776655
No 160
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=63.80 E-value=8.6 Score=33.10 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=27.4
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
..-+.|++|| .+++.+...++.|+|+|+.+..
T Consensus 202 ~~G~~V~~WTvn~~~~~~~l~~~GVDgIiTD~P 234 (250)
T 3ks6_A 202 AAGLDFGCWAAHTPSQITKALDLGVKVFTTDRP 234 (250)
T ss_dssp HTTCEEEEECCCSHHHHHHHHHHTCSEEEESCH
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCH
Confidence 4567899999 5789999999999999998653
No 161
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=63.77 E-value=24 Score=24.84 Aligned_cols=80 Identities=11% Similarity=0.175 Sum_probs=45.1
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... .+.+.++++..-.. ..--.++..+. .....++......+ ......+++.|++|.+.+|-++
T Consensus 32 ~~~~~~~a~~~~~~-~~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~ 108 (120)
T 1tmy_A 32 EATNGREAVEKYKE-LKPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKIIVCSAMGQ-QAMVIEAIKAGAKDFIVKPFQP 108 (120)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEECSCGG-GCHHHHHHHHHHHCTTCCEEEEECTTC-HHHHHHHHHTTCCEEEESSCCH
T ss_pred EECCHHHHHHHHHh-cCCCEEEEeCCCCC-CcHHHHHHHHHhhCCCCeEEEEeCCCC-HHHHHHHHHhCcceeEeCCCCH
Confidence 34555443322222 34688888654322 12222333332 23455665554433 3456678899999999999999
Q ss_pred HHHHH
Q 024251 194 KAVLA 198 (270)
Q Consensus 194 ~~v~~ 198 (270)
.++.+
T Consensus 109 ~~l~~ 113 (120)
T 1tmy_A 109 SRVVE 113 (120)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 162
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=63.21 E-value=16 Score=26.70 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=45.5
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc----CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q----~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.++.-.........+.+|++..-..-..--.++..+. .....|+......+ ......+++.|++|++.+|-
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~KP~ 112 (140)
T 3lua_A 34 EVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDN-PGYRHAALKFKVSDYILKPY 112 (140)
T ss_dssp EECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCC-HHHHHHHHHSCCSEEEESSC
T ss_pred EECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCC-HHHHHHHHHcCCCEEEECCC
Confidence 34555543332222134677888543320111122333322 23456666555433 34566788999999999999
Q ss_pred CHHHHHHH
Q 024251 192 DVKAVLAL 199 (270)
Q Consensus 192 d~~~v~~l 199 (270)
++.++.+.
T Consensus 113 ~~~~l~~~ 120 (140)
T 3lua_A 113 PTKRLENS 120 (140)
T ss_dssp CTTHHHHH
T ss_pred CHHHHHHH
Confidence 98876554
No 163
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=62.90 E-value=45 Score=30.70 Aligned_cols=111 Identities=11% Similarity=0.136 Sum_probs=62.9
Q ss_pred CchhHHHHHHHhCCcEEEEcC--cch----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccC
Q 024251 58 ESKQVMTAAVERGWNTFVFLS--ENQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~--~~~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~ 131 (270)
+..+.+..++|.|+|.+.+.. .+. +.++.+.+. .+ +.++.+ ..+.+.++.+.+.. .
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~-------------~~--~~pviv-~~v~~~~~a~~a~~--~ 214 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTK-------------YP--NLDLIA-GNIVTKEAALDLIS--V 214 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH-------------CT--TCEEEE-EEECSHHHHHHHHT--T
T ss_pred hHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHH-------------CC--CCeEEE-cCCCcHHHHHHHHh--c
Confidence 346778889999999988732 221 122111111 00 223322 25677777555543 3
Q ss_pred CCceEEEeC-----------CCCeeec----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 132 QAENIVIDL-----------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 132 ~~~~vvv~~-----------~DWtiIP----lENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
.++.+++.. .+|. .| +..+...+...+..|++ .+.+.+++..++. .|+|+|.+-.
T Consensus 215 Gad~I~vg~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala---~GAd~V~iG~ 286 (404)
T 1eep_A 215 GADCLKVGIGPGSICTTRIVAGVG-VPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIA---AGADSVMIGN 286 (404)
T ss_dssp TCSEEEECSSCSTTSHHHHHHCCC-CCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHH---HTCSEEEECH
T ss_pred CCCEEEECCCCCcCcCccccCCCC-cchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHH---cCCCHHhhCH
Confidence 588898821 2331 22 22333322234567887 6888888877654 6999999854
No 164
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=62.70 E-value=27 Score=25.35 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=45.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.++++..-.. +.--.++..+. .....++...... +......+++.|++|.+.+|-++
T Consensus 32 ~~~~~~~al~~~~~-~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~ 108 (132)
T 3crn_A 32 IAATAGEGLAKIEN-EFFNLALFXIKLPD-MEGTELLEKAHKLRPGMKKIMVTGYA-SLENSVFSLNAGADAYIMKPVNP 108 (132)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSBCSS-SBHHHHHHHHHHHCTTSEEEEEESCC-CHHHHHHHHHTTCSEEEESSCCH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCC-CchHHHHHHHHhhCCCCcEEEEeccc-cHHHHHHHHhccchhhccCCCCH
Confidence 34554443322222 34678888543222 11122333332 2345666655443 33456788899999999999999
Q ss_pred HHHHH
Q 024251 194 KAVLA 198 (270)
Q Consensus 194 ~~v~~ 198 (270)
.++.+
T Consensus 109 ~~L~~ 113 (132)
T 3crn_A 109 RDLLE 113 (132)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 165
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=62.70 E-value=44 Score=24.73 Aligned_cols=80 Identities=10% Similarity=0.123 Sum_probs=44.6
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc------CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ------GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q------~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
..+.++.-.... ....+.++++..-...=-+ .++..+. .....++....+.+ ......+++.|++|.+.+|
T Consensus 44 ~~~~~~al~~~~-~~~~dlvl~D~~mp~~~g~-~~~~~lr~~~~~~~~~~pii~~s~~~~-~~~~~~~~~~Ga~~~l~KP 120 (143)
T 3m6m_D 44 VNGAEQVLDAMA-EEDYDAVIVDLHMPGMNGL-DMLKQLRVMQASGMRYTPVVVLSADVT-PEAIRACEQAGARAFLAKP 120 (143)
T ss_dssp ESSHHHHHHHHH-HSCCSEEEEESCCSSSCHH-HHHHHHHHHHHTTCCCCCEEEEESCCC-HHHHHHHHHTTCSEEEESS
T ss_pred eCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHH-HHHHHHHhchhccCCCCeEEEEeCCCC-HHHHHHHHHcChhheeeCC
Confidence 455554333222 2457888886543322111 2333332 12234555444332 3345678899999999999
Q ss_pred CCHHHHHHH
Q 024251 191 EDVKAVLAL 199 (270)
Q Consensus 191 ~d~~~v~~l 199 (270)
-+++++.+.
T Consensus 121 ~~~~~L~~~ 129 (143)
T 3m6m_D 121 VVAAKLLDT 129 (143)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999876543
No 166
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=62.69 E-value=20 Score=32.12 Aligned_cols=111 Identities=13% Similarity=0.165 Sum_probs=63.5
Q ss_pred chhHHHHHHHhCCcEEEEcCc-chhhh-hhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhcc-ccCCCce
Q 024251 59 SKQVMTAAVERGWNTFVFLSE-NQQLA-IDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQP-ADGQAEN 135 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~-~~e~a-~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~-~~~~~~~ 135 (270)
+.+++.++.+.|.-+++.... +.+.. +.+.++... .++++++-+-+.++...+.+.. ...+.+.
T Consensus 25 ~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~-------------~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~ 91 (332)
T 2z6i_A 25 DGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSL-------------TDKPFGVNIMLLSPFVEDIVDLVIEEGVKV 91 (332)
T ss_dssp CHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHH-------------CCSCEEEEECTTSTTHHHHHHHHHHTTCSE
T ss_pred cHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-------------cCCCEEEEecCCCCCHHHHHHHHHHCCCCE
Confidence 478888899999877885432 22221 112222110 0123333333323321122111 1246788
Q ss_pred EEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 136 vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
|.+.+.. |. .++..+...+..|+..+.+.++|+.+ .+.|+|+|++..
T Consensus 92 V~~~~g~----p~-~~i~~l~~~g~~v~~~v~~~~~a~~~---~~~GaD~i~v~g 138 (332)
T 2z6i_A 92 VTTGAGN----PS-KYMERFHEAGIIVIPVVPSVALAKRM---EKIGADAVIAEG 138 (332)
T ss_dssp EEECSSC----GG-GTHHHHHHTTCEEEEEESSHHHHHHH---HHTTCSCEEEEC
T ss_pred EEECCCC----hH-HHHHHHHHcCCeEEEEeCCHHHHHHH---HHcCCCEEEEEC
Confidence 8887653 43 35666665677899999999998764 468999999964
No 167
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=62.55 E-value=31 Score=32.54 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=65.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccC
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~ 131 (270)
+..+.+..+++.|+|.+.+...+ .+..+++.+. . + +.++.. ..+.+.++...+.. .
T Consensus 237 ~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~---~----------p--~~pvi~-g~~~t~e~a~~l~~--~ 298 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKAD---Y----------P--DLPVVA-GNVATPEGTEALIK--A 298 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH---C----------T--TSCEEE-EEECSHHHHHHHHH--T
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHH---C----------C--CceEEe-CCcCCHHHHHHHHH--c
Confidence 34778889999999999875421 1222222111 0 0 222221 35678887655553 3
Q ss_pred CCceEEEeC-----------CCCeeech----hhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 132 QAENIVIDL-----------PDWQVIPA----ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 132 ~~~~vvv~~-----------~DWtiIPl----ENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
.++.+++.. .+|. +|. ..+...+.+.+..|++ .+.+++++..++ +.|+|+|.+-.
T Consensus 299 G~d~I~v~~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kal---a~GAd~V~iGr 370 (494)
T 1vrd_A 299 GADAVKVGVGPGSICTTRVVAGVG-VPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKAL---AAGAESVMVGS 370 (494)
T ss_dssp TCSEEEECSSCSTTCHHHHHHCCC-CCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH---HTTCSEEEESH
T ss_pred CCCEEEEcCCCCccccccccCCCC-ccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHH---HcCCCEEEECH
Confidence 578888833 1231 332 3333333334567888 788998887665 56999999764
No 168
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=62.22 E-value=9.1 Score=27.92 Aligned_cols=81 Identities=9% Similarity=0.102 Sum_probs=47.8
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc----CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q----~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+.++....... ...+.+|++..-.. ..--.++..+. .....|+......+ ......+++.|++|++.+|-
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~~s~~~~-~~~~~~~~~~g~~~~l~kp~ 112 (142)
T 3cg4_A 36 SADSGGQCIDLLKK-GFSGVVLLDIMMPG-MDGWDTIRAILDNSLEQGIAIVMLTAKNA-PDAKMIGLQEYVVDYITKPF 112 (142)
T ss_dssp EESSHHHHHHHHHT-CCCEEEEEESCCSS-SCHHHHHHHHHHTTCCTTEEEEEEECTTC-CCCSSTTGGGGEEEEEESSC
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeCCCCC-CCHHHHHHHHHhhcccCCCCEEEEECCCC-HHHHHHHHhcCccEEEeCCC
Confidence 44565553333322 34678888655332 22223344432 24456666655432 34556788999999999999
Q ss_pred CHHHHHHH
Q 024251 192 DVKAVLAL 199 (270)
Q Consensus 192 d~~~v~~l 199 (270)
++.++.+.
T Consensus 113 ~~~~l~~~ 120 (142)
T 3cg4_A 113 DNEDLIEK 120 (142)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99876543
No 169
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=61.44 E-value=15 Score=34.94 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=43.3
Q ss_pred EEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCC-CceEEE-EcCCHHHHHHHHHHHhcccCeEEE
Q 024251 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS-GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 111 v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~-~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
++.-+-+.+.+..+.+.. .+.+.++++...-.--.+.++|..+... +..|++ .+.++++|+.+. +.|+|+|++
T Consensus 137 v~~~v~~~~~e~~~~lve--aGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~---~aGAD~I~v 211 (400)
T 3ffs_A 137 VGAAIGVNEIERAKLLVE--AGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELI---ENGADGIKV 211 (400)
T ss_dssp CEEEECCC-CHHHHHHHH--HTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHH---HTTCSEEEE
T ss_pred EEeecCCCHHHHHHHHHH--cCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHH---HcCCCEEEE
Confidence 444444444333333333 3578888854421111224555555443 567875 899999998765 679999999
Q ss_pred e
Q 024251 189 K 189 (270)
Q Consensus 189 ~ 189 (270)
-
T Consensus 212 G 212 (400)
T 3ffs_A 212 G 212 (400)
T ss_dssp C
T ss_pred e
Confidence 3
No 170
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=61.16 E-value=6.3 Score=33.96 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=40.1
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
.+.+-.+ +..+. +.+++.++..+-++++ .++++++++.+ ++.|+|||+ ||+|..+.++++
T Consensus 182 ~~~~~~~---~~~~~-~~~v~~~~~~G~~V~~WTvn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~~~ 242 (250)
T 3ks6_A 182 IHEIGVH---IDTAD-AGLMAQVQAAGLDFGCWAAHTPSQITKA---LDLGVKVFT--TDRPTLAIALRT 242 (250)
T ss_dssp CCEEEEE---GGGCC-HHHHHHHHHTTCEEEEECCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHHHH
T ss_pred CCEEecc---hhhCC-HHHHHHHHHCCCEEEEEeCCCHHHHHHH---HHcCCCEEE--cCCHHHHHHHHH
Confidence 4444443 33343 4577777767667655 57777777665 578999998 889997766554
No 171
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=61.12 E-value=16 Score=28.81 Aligned_cols=80 Identities=13% Similarity=0.146 Sum_probs=45.6
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.++++..-+..=.+ .++..+. .....|+......+ ......+++.|++|.+.+|-++
T Consensus 33 ~~~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~-~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~a~~~Ga~~~l~Kp~~~ 109 (208)
T 1yio_A 33 TFDCASTFLEHRRP-EQHGCLVLDMRMPGMSGI-ELQEQLTAISDGIPIVFITAHGD-IPMTVRAMKAGAIEFLPKPFEE 109 (208)
T ss_dssp EESSHHHHHHHCCT-TSCEEEEEESCCSSSCHH-HHHHHHHHTTCCCCEEEEESCTT-SCCCHHHHHTTEEEEEESSCCH
T ss_pred EcCCHHHHHHhhhc-cCCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCEEEEeCCCC-HHHHHHHHHCCCcEEEeCCCCH
Confidence 34555543333222 346778886554332222 2333332 23456665554433 3456678899999999999999
Q ss_pred HHHHH
Q 024251 194 KAVLA 198 (270)
Q Consensus 194 ~~v~~ 198 (270)
.++.+
T Consensus 110 ~~L~~ 114 (208)
T 1yio_A 110 QALLD 114 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 172
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=60.31 E-value=8.7 Score=27.02 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=38.6
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
..+.++++..-... .--.++..+.. ....++......+ ......+++.|+++.+.+|-++.++.+
T Consensus 45 ~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~Kp~~~~~l~~ 110 (121)
T 1zh2_A 45 KPDLIILDLGLPDG-DGIEFIRDLRQWSAVPVIVLSARSE-ESDKIAALDAGADDYLSKPFGIGELQA 110 (121)
T ss_dssp CCSEEEEESEETTE-EHHHHHHHHHTTCCCCEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEeCCCCCC-cHHHHHHHHHhCCCCcEEEEECCCC-HHHHHHHHhcCCCeEEeCCcCHHHHHH
Confidence 45777775432221 11223333332 2345655554433 344567889999999999999987654
No 173
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A
Probab=59.09 E-value=18 Score=32.03 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=55.2
Q ss_pred EEEEEecChhhhhhhccccCCCceEEEeCCCCeeech------hhhhhcccCCCceEEEEcCCHHH---HHHHHHHHhcc
Q 024251 112 GSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPA------ENIVASFQGSGKTVFAISKTPSE---AQIFLEALEQG 182 (270)
Q Consensus 112 ~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPl------ENlIA~~q~~~~~i~a~v~~~~e---A~~~l~~LE~G 182 (270)
-.|+.-.+++-++.+.. ..|.++++..|= +.|- +||.+. ...+..++..+++.+. ...+-.+++.|
T Consensus 10 ~L~vP~~~~~~~~ka~~---gaD~vilDlEDa-v~~~~k~~Ar~~l~~~-~~~~~~~~VRVn~~~~~~~~~dl~~~~~~g 84 (273)
T 1u5h_A 10 WLFCPADAPEAFAAAAA---AADVVILDLEDG-VAEAQKPAARNALRDT-PLDPERTVVRINAGGTADQARDLEALAGTA 84 (273)
T ss_dssp EEEEETTCGGGHHHHHH---HCSEEEEESSTT-SCGGGHHHHHHHHHHS-CCCTTSEEEECCCTTCHHHHHHHHHHHTSC
T ss_pred EEEeeCCCHHHHHHHHh---CCCEEEEECCCC-CCcCCHHHHHHHHHhc-CcCCCeEEEEECCCCchHHHHHHHHHHhcC
Confidence 34555556666666544 689999999874 2333 445443 4445689999998763 24455577889
Q ss_pred cCeEEEe-cCCHHHHHHH
Q 024251 183 LGGIVLK-VEDVKAVLAL 199 (270)
Q Consensus 183 ~DGVvl~-~~d~~~v~~l 199 (270)
+|||+|+ .+++++++.+
T Consensus 85 ~~gi~lPKv~s~~~v~~~ 102 (273)
T 1u5h_A 85 YTTVMLPKAESAAQVIEL 102 (273)
T ss_dssp CCEEEETTCCCHHHHHTT
T ss_pred CCEEEeCCCCCHHHHHHH
Confidence 9999996 4567877653
No 174
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=59.09 E-value=11 Score=33.40 Aligned_cols=126 Identities=13% Similarity=0.166 Sum_probs=66.6
Q ss_pred hhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~-e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
.+.+..+.+.|+|.+-|..+.- +..+-+ +.+++.|.+.|+-+.-.++. +.+.......|+|++
T Consensus 99 ~~~i~~~~~aGAd~itvH~Ea~~~~~~~i--------------~~ir~~G~k~Gvalnp~Tp~--e~l~~~l~~vD~Vlv 162 (246)
T 3inp_A 99 DALIESFAKAGATSIVFHPEASEHIDRSL--------------QLIKSFGIQAGLALNPATGI--DCLKYVESNIDRVLI 162 (246)
T ss_dssp HHHHHHHHHHTCSEEEECGGGCSCHHHHH--------------HHHHTTTSEEEEEECTTCCS--GGGTTTGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHHH--------------HHHHHcCCeEEEEecCCCCH--HHHHHHHhcCCEEEE
Confidence 4578899999999999876521 111111 11234577777654433332 344344445788876
Q ss_pred eC-----CCCeeec--hhhh---hhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe-----cCCHH-HHHHHH
Q 024251 139 DL-----PDWQVIP--AENI---VASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDVK-AVLALK 200 (270)
Q Consensus 139 ~~-----~DWtiIP--lENl---IA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~-----~~d~~-~v~~l~ 200 (270)
-. .+-+.|| +|.| -+... +.+.. +.+-.-.. .+.+-++.+.|+|.++.- .+|+. .+++|+
T Consensus 163 MsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~-I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~ 240 (246)
T 3inp_A 163 MSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDIL-LEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMR 240 (246)
T ss_dssp ECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCE-EEEESSCC-TTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred eeecCCCCCcccchHHHHHHHHHHHHHHhcCCCee-EEEECCcC-HHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHH
Confidence 32 2444566 3332 22111 11222 22222221 234567789999999873 45774 467777
Q ss_pred Hhh
Q 024251 201 EYF 203 (270)
Q Consensus 201 ~~~ 203 (270)
+.+
T Consensus 241 ~~i 243 (246)
T 3inp_A 241 DEL 243 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 175
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=58.96 E-value=10 Score=26.56 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=38.1
Q ss_pred CCceEEEeCCCCeeechhhhhhccc-CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ-GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q-~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
..+.++++..-... .--.++..+. .....++......+ ......+++.|++|.+.+|-+++++.+
T Consensus 45 ~~dlvl~D~~l~~~-~g~~~~~~l~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~Kp~~~~~l~~ 110 (120)
T 2a9o_A 45 QPDIIILDLMLPEI-DGLEVAKTIRKTSSVPILMLSAKDS-EFDKVIGLELGADDYVTKPFSNRELQA 110 (120)
T ss_dssp CCSEEEECSSCSSS-CHHHHHHHHHHHCCCCEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEeccCCCC-CHHHHHHHHHhCCCCCEEEEecCCc-hHHHHHHHhCCHhheEeCCCCHHHHHH
Confidence 46778875442221 1122333332 12445555554433 334567889999999999999987654
No 176
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=58.85 E-value=18 Score=31.23 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=32.2
Q ss_pred hhhhhcccCCCc--eEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 149 ENIVASFQGSGK--TVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 149 ENlIA~~q~~~~--~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
+.++..++..+- +|++ .+++.++++.+ ++.|+|||+ |++|+.+.++
T Consensus 212 ~~~v~~~~~~Glg~~V~~WTvn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~ 260 (285)
T 1xx1_A 212 EAIKSRDSANGFINKIYYWSVDKVSTTKAA---LDVGVDGIM--TNYPNVLIGV 260 (285)
T ss_dssp HHHHHHTSTTCCCCEEEEECCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEeeCCCHHHHHHH---HhcCCCEEE--eCCHHHHHHH
Confidence 456666665544 6555 47888887766 578999998 7888866543
No 177
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=58.65 E-value=11 Score=32.65 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 49 ~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
..|.|.+|| .+++.|...++.|+|+|+.+..
T Consensus 223 lg~~V~~WTvn~~~~~~~l~~~GVDgIiTD~P 254 (285)
T 1xx1_A 223 FINKIYYWSVDKVSTTKAALDVGVDGIMTNYP 254 (285)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHTCSEEEESCH
T ss_pred CCCeEEEeeCCCHHHHHHHHhcCCCEEEeCCH
Confidence 344899999 6789999999999999998653
No 178
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=58.51 E-value=25 Score=31.60 Aligned_cols=108 Identities=9% Similarity=0.091 Sum_probs=62.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
..+.+..++|.|++.+.+..++ .+..+.+.+ .|.+ +...+.+.++...+.. ...|.++
T Consensus 91 ~~~~~~~~~~~g~d~V~l~~g~p~~~~~~l~~-----------------~g~~--v~~~v~s~~~a~~a~~--~GaD~i~ 149 (326)
T 3bo9_A 91 ADDLVKVCIEEKVPVVTFGAGNPTKYIRELKE-----------------NGTK--VIPVVASDSLARMVER--AGADAVI 149 (326)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCCHHHHHHHHH-----------------TTCE--EEEEESSHHHHHHHHH--TTCSCEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCcHHHHHHHHH-----------------cCCc--EEEEcCCHHHHHHHHH--cCCCEEE
Confidence 3788999999999998886543 223322221 2333 3346788877655443 3578999
Q ss_pred EeCCC--Ce--eechhhhhhcccC-CCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 138 IDLPD--WQ--VIPAENIVASFQG-SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 138 v~~~D--Wt--iIPlENlIA~~q~-~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
++... -. -+|--+++.++.. .+..|++ .+.|.+++..++. .|+|||.+-+
T Consensus 150 v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~---~GA~gV~vGs 206 (326)
T 3bo9_A 150 AEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFA---LGAEAVQMGT 206 (326)
T ss_dssp EECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH---HTCSEEEESH
T ss_pred EECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH---hCCCEEEech
Confidence 96521 11 1222233333221 1334554 4677888766554 6999999864
No 179
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=58.19 E-value=32 Score=31.34 Aligned_cols=132 Identities=11% Similarity=0.163 Sum_probs=66.1
Q ss_pred CcEEEEEe--CchhHHHHHHHhCCcEEEEcCcch----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecCh---
Q 024251 50 PKRVWIWT--ESKQVMTAAVERGWNTFVFLSENQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTP--- 120 (270)
Q Consensus 50 ~K~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~~~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~--- 120 (270)
....|++. .+.+.+..|..+|+|.++++-||. ++......+.. . +... +..+.. .+|.|.+.
T Consensus 44 ~~Rs~L~vP~~~p~~~eka~~~gaD~vilDLEDaV~~~~k~~Ar~~l~~--~--l~~~---~~~~~~--~~VRVn~~~t~ 114 (316)
T 3qll_A 44 QTRSWLFTPATRSDRFAKAAENGADVAIIDLEDSVSQADKEQARQKAIS--Y--LSSR---PATSLP--LALRINGLDTR 114 (316)
T ss_dssp GCCEEEEEESCC----------CCSEEEEECSTTSCGGGHHHHHHHHHC----------------CC--EEEECCCTTSH
T ss_pred cccEEEECCCCCHHHHHHHhhCCCCEEEEeCCCCCCCcCHHHHHHHHHH--H--Hhcc---cccCCe--EEEEECCCCCc
Confidence 34578876 468899999999999999998763 22211111110 0 0000 011233 45556543
Q ss_pred ---hhhhhhccccCCCceEEEeCCCCeeechhh---hhhcccC--CCceEEEEcCCHHHHHHHHHHHh--cccCeEEEec
Q 024251 121 ---QELQQLQPADGQAENIVIDLPDWQVIPAEN---IVASFQG--SGKTVFAISKTPSEAQIFLEALE--QGLGGIVLKV 190 (270)
Q Consensus 121 ---ed~e~~~~~~~~~~~vvv~~~DWtiIPlEN---lIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE--~G~DGVvl~~ 190 (270)
+|+..+.......+.+++ +++=-.|. +.+.+.. .+..|++.+.+++-..-+-+++. -|+||+.+-+
T Consensus 115 ~~~~Dl~~~l~~g~~~~gIvl----PKvesa~~v~~~~~~l~~~~~~~~l~~~IET~~gv~~~~eIa~a~~~v~~l~~G~ 190 (316)
T 3qll_A 115 AGIEDIHALLECGSLPDYLVL----PKTESAAHLQILDRLMMFAGSDTRLIGIIESVRGLNAVESIAAATPKLAGLIFGA 190 (316)
T ss_dssp HHHHHHHHHHHSCCCCSEEEE----TTCCSHHHHHHHHHHTSCC--CCEEEEEECSHHHHHTHHHHHTSCTTEEEEEECH
T ss_pred hhHHHHHHHHhCCCCCCEEEe----CCCCCHHHHHHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHHHhcCCCceEEEECH
Confidence 344544332111355655 33322333 2333321 25689999999999998888887 3999999988
Q ss_pred CCHH
Q 024251 191 EDVK 194 (270)
Q Consensus 191 ~d~~ 194 (270)
.|..
T Consensus 191 ~DL~ 194 (316)
T 3qll_A 191 ADMA 194 (316)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 180
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15
Probab=57.94 E-value=23 Score=32.42 Aligned_cols=112 Identities=12% Similarity=0.110 Sum_probs=61.8
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEEcCcc---------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhh
Q 024251 53 VWIWTESKQVMTAAVERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQEL 123 (270)
Q Consensus 53 vWiw~~~Ke~vT~ALEsG~d~~vv~~~~---------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~ 123 (270)
-|.|--.....++-..+..|-+|+++++ ++.++ .++..|+++-.|+.+..-|+-
T Consensus 22 ~w~~~l~~~~~~~l~~~~yd~vViD~~~~g~~~~~~t~~~i~-----------------~L~~~G~~viaYlSvGe~E~~ 84 (309)
T 2aam_A 22 NWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIK-----------------IMVDAGVVPVAYVNIGQAEDY 84 (309)
T ss_dssp CCEEECSSCCHHHHHTSCCSEEEECSBSSSSGGGBCCHHHHH-----------------HHHHTTCEEEEEEESSEEETT
T ss_pred cEEEEeCCCChhhhhhcCCCEEEEcCCcccccccCCCHHHHH-----------------HHHhCCCEEEEEEeccccccc
Confidence 3665543333343344799999998752 11111 133457888888888776652
Q ss_pred hhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHH----HHHHHhcccCeEEEecCCH
Q 024251 124 QQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI----FLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 124 e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~----~l~~LE~G~DGVvl~~~d~ 193 (270)
..-. ...|+.+|-.-|.....+=++.-+.-+.+++==.+ +-.++++|.|||-|++=|.
T Consensus 85 R~y~------------~~~w~~~~~~~lg~~n~~W~ge~~vDi~~~~w~~i~~~rl~~~~~kG~DGvflDnvD~ 146 (309)
T 2aam_A 85 RFYW------------KESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDS 146 (309)
T ss_dssp STTC------------CTHHHHSCCTTEEEEETTEEEEEEECTTSHHHHHHHHHHHHHHHHTTCSEEEEECTTH
T ss_pred chhh------------hhccccCCHHHhCccCCCCCCceEEecCCHHHHHHHHHHHHHHHHcCCCeEeecccch
Confidence 1100 01222255555554433333445555566542122 2267889999999998763
No 181
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=57.87 E-value=24 Score=30.44 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=65.6
Q ss_pred hhHHHHHHHhCCcEEEEcCcchh-hhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQ-LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e-~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
.+.+..+.+.|+|.+.|..+.-+ ..+.+. .+++.|.++|+-+.-.++. +.+.......|+|++
T Consensus 77 ~~~i~~~~~aGad~itvH~Ea~~~~~~~i~--------------~i~~~G~k~gval~p~t~~--e~l~~~l~~~D~Vl~ 140 (228)
T 3ovp_A 77 EQWVKPMAVAGANQYTFHLEATENPGALIK--------------DIRENGMKVGLAIKPGTSV--EYLAPWANQIDMALV 140 (228)
T ss_dssp GGGHHHHHHHTCSEEEEEGGGCSCHHHHHH--------------HHHHTTCEEEEEECTTSCG--GGTGGGGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEccCCchhHHHHHH--------------HHHHcCCCEEEEEcCCCCH--HHHHHHhccCCeEEE
Confidence 45788999999999998764211 111111 1223466666654433332 333333345788877
Q ss_pred eCC-----CCeeec-----hhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe-----cCCHHH-HHHHHHh
Q 024251 139 DLP-----DWQVIP-----AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDVKA-VLALKEY 202 (270)
Q Consensus 139 ~~~-----DWtiIP-----lENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~-----~~d~~~-v~~l~~~ 202 (270)
-.- +-+.|| +..+-+... +. .+.+-.-.. .+.+-.+.+.|+|+++.- .+|+.+ ++++++.
T Consensus 141 msv~pGf~Gq~f~~~~l~ki~~lr~~~~--~~-~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~ 216 (228)
T 3ovp_A 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFP--SL-DIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNV 216 (228)
T ss_dssp ESSCTTTCSCCCCGGGHHHHHHHHHHCT--TC-EEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHH
T ss_pred eeecCCCCCcccCHHHHHHHHHHHHhcC--CC-CEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHH
Confidence 432 334566 222322211 11 222222221 245556789999999874 457644 6666665
Q ss_pred hc
Q 024251 203 FD 204 (270)
Q Consensus 203 ~~ 204 (270)
+.
T Consensus 217 ~~ 218 (228)
T 3ovp_A 217 CS 218 (228)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 182
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=57.72 E-value=14 Score=31.10 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=29.1
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCcchhhhh
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAI 85 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~~~e~a~ 85 (270)
.+.+.+|+|+ .+++.+...++.|+|+|+.+. .+.+.
T Consensus 184 ~~G~~v~~wtvn~~~~~~~l~~~GvdgI~TD~--p~~~~ 220 (224)
T 1vd6_A 184 KRGLFVVAWTVNEEGEARRLLALGLDGLIGDR--PEVLL 220 (224)
T ss_dssp HTTCEEEEECCCCHHHHHHHHHTTCSEEEESC--HHHHT
T ss_pred HCCCEEEEEeCCCHHHHHHHHhcCCCEEEcCC--HHHHH
Confidence 4567899999 688999999999999999765 34443
No 183
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=57.57 E-value=9.8 Score=30.54 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=47.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.++++..-...=.+ .++..+. .....|+......+ ......+++.|++|++.+|-++
T Consensus 36 ~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~-~~~~~l~~~~~~~~ii~lt~~~~-~~~~~~~~~~ga~~~l~Kp~~~ 112 (233)
T 1ys7_A 36 TAVDGAEALRSATE-NRPDAIVLDINMPVLDGV-SVVTALRAMDNDVPVCVLSARSS-VDDRVAGLEAGADDYLVKPFVL 112 (233)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESSCSSSCHH-HHHHHHHHTTCCCCEEEEECCCT-TTCCCTTTTTTCSEEEESSCCH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCEEEEEcCCC-HHHHHHHHHcCCCEEEeCCCCH
Confidence 44565553332222 357888887654332222 2333332 23456665554332 3455678899999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 113 ~~L~~~ 118 (233)
T 1ys7_A 113 AELVAR 118 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 184
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=57.45 E-value=49 Score=27.84 Aligned_cols=113 Identities=10% Similarity=0.071 Sum_probs=62.2
Q ss_pred CchhHHHHHHHhCCcEEEEc--Ccc--------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhc
Q 024251 58 ESKQVMTAAVERGWNTFVFL--SEN--------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ 127 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~--~~~--------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~ 127 (270)
.-.+.+..+++.|+|.+=+. +.+ .+.++++.+.. .+...+-+-|.++++.-..+
T Consensus 20 ~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~----------------~~~~~v~lmv~d~~~~i~~~ 83 (228)
T 1h1y_A 20 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHT----------------KAYLDCHLMVTNPSDYVEPL 83 (228)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTC----------------CSEEEEEEESSCGGGGHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhc----------------CCcEEEEEEecCHHHHHHHH
Confidence 34678899999999975333 111 23444443331 12334445566664432222
Q ss_pred cccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEc--CCHHHHHHHHHHHhc--ccCeEEEec
Q 024251 128 PADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQ--GLGGIVLKV 190 (270)
Q Consensus 128 ~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v--~~~~eA~~~l~~LE~--G~DGVvl~~ 190 (270)
.. ..++.+.+....-. -|++..+.++.+.+.++...+ .++.|+ +...++. |+|-|++.+
T Consensus 84 ~~-agad~v~vH~~~~~-~~~~~~~~~i~~~g~~igv~~~p~t~~e~--~~~~~~~~~~~d~vl~~s 146 (228)
T 1h1y_A 84 AK-AGASGFTFHIEVSR-DNWQELIQSIKAKGMRPGVSLRPGTPVEE--VFPLVEAENPVELVLVMT 146 (228)
T ss_dssp HH-HTCSEEEEEGGGCT-TTHHHHHHHHHHTTCEEEEEECTTSCGGG--GHHHHHSSSCCSEEEEES
T ss_pred HH-cCCCEEEECCCCcc-cHHHHHHHHHHHcCCCEEEEEeCCCCHHH--HHHHHhcCCCCCEEEEEe
Confidence 22 45788887665322 243556666655566777777 344333 2333444 999999844
No 185
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=57.08 E-value=22 Score=33.40 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=63.9
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc--h----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccC
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN--Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~--~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~ 131 (270)
..++.+..+++.|+|.+++.... . +..+++.+. ++ +..+. -..+.+.++...+.. .
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~~-------------~p--~~pvi-~G~v~t~~~a~~~~~--~ 294 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAH-------------FP--NRTLI-AGNIATAEGARALYD--A 294 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHH-------------CS--SSCEE-EEEECSHHHHHHHHH--T
T ss_pred hHHHHHHHHHHcCCCeEEEeeecCcchhHHHHHHHHHHH-------------CC--CCcEe-CCCccCHHHHHHHHH--c
Confidence 34788999999999999987521 1 111111111 00 11121 335567766554443 3
Q ss_pred CCceEEEeC-----------CCCeeech---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 132 QAENIVIDL-----------PDWQVIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 132 ~~~~vvv~~-----------~DWtiIPl---ENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.++.+.+.. .+|..-.+ ..+....+..+..|++ .+.+.+|+..++ +.|+|+|++-.-
T Consensus 295 Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal---~~GA~~v~vG~~ 367 (491)
T 1zfj_A 295 GVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKAL---AAGGNAVMLGSM 367 (491)
T ss_dssp TCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred CCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHH---HcCCcceeeCHH
Confidence 467776631 14432223 3333322234567887 678999987766 469999998543
No 186
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=56.85 E-value=40 Score=27.43 Aligned_cols=72 Identities=8% Similarity=0.050 Sum_probs=43.2
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHH-HHHHHHHHhcccCeEEEecC---------CHHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSE-AQIFLEALEQGLGGIVLKVE---------DVKAVLALK 200 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~e-A~~~l~~LE~G~DGVvl~~~---------d~~~v~~l~ 200 (270)
..++.+++...... =-++.++..++..+.+++..+.++++ .+.+..+++.|+|.|.+.|. +.+.+++++
T Consensus 76 ~Gad~v~v~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 76 AGADYVTVLGVTDV-LTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TTCSEEEEETTSCH-HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred cCCCEEEEeCCCCh-hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 35788888655310 01355666665556677765433322 24456678899999988653 456666666
Q ss_pred Hhh
Q 024251 201 EYF 203 (270)
Q Consensus 201 ~~~ 203 (270)
+.+
T Consensus 155 ~~~ 157 (211)
T 3f4w_A 155 KVR 157 (211)
T ss_dssp HHC
T ss_pred HHc
Confidence 543
No 187
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=56.82 E-value=19 Score=31.64 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=65.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~~-e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
+...+..|++.|+|++++..... +..+++-..+. .-|. -+.+++.+.++++.+... ..+++=
T Consensus 117 d~~qi~~a~~~GAD~VlL~~~~l~~~l~~l~~~a~-------------~lGl--~~lvev~~~~E~~~a~~~--gad~IG 179 (254)
T 1vc4_A 117 DPFMLEEARAFGASAALLIVALLGELTGAYLEEAR-------------RLGL--EALVEVHTERELEIALEA--GAEVLG 179 (254)
T ss_dssp SHHHHHHHHHTTCSEEEEEHHHHGGGHHHHHHHHH-------------HHTC--EEEEEECSHHHHHHHHHH--TCSEEE
T ss_pred CHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHH-------------HCCC--eEEEEECCHHHHHHHHHc--CCCEEE
Confidence 45467889999999998854211 12221111100 0122 245788999887755443 347887
Q ss_pred EeCCCCeeec--hhh---hhhcccCC--CceEEEE--cCCHHHHHHHHHHHhcccCeEEEec-----CCHH
Q 024251 138 IDLPDWQVIP--AEN---IVASFQGS--GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV-----EDVK 194 (270)
Q Consensus 138 v~~~DWtiIP--lEN---lIA~~q~~--~~~i~a~--v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~~ 194 (270)
++..+-+-++ ++. |....... +..++++ ++++++++.+ ++ |+|||++-. +||.
T Consensus 180 vn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l---~~-Ga~gvlVGsAl~~~~d~~ 246 (254)
T 1vc4_A 180 INNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKAL---EG-LFDAVLIGTSLMRAPDLE 246 (254)
T ss_dssp EESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTT---TT-TCSEEEECHHHHTSSCHH
T ss_pred EccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHH---Hc-CCCEEEEeHHHcCCCCHH
Confidence 8776655443 232 34333210 2345553 5678887765 56 999999753 5664
No 188
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=56.73 E-value=17 Score=26.89 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=40.9
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-.... ....+.++++..-.. +.--.++..+. .....|+...... +......+++.|++|.+.+|-++
T Consensus 34 ~~~~~~~al~~~~-~~~~dlvllD~~lp~-~~g~~l~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~~ 110 (141)
T 3cu5_A 34 QADDGINAIQIAL-KHPPNVLLTDVRMPR-MDGIELVDNILKLYPDCSVIFMSGYS-DKEYLKAAIKFRAIRYVEKPIDP 110 (141)
T ss_dssp EESSHHHHHHHHT-TSCCSEEEEESCCSS-SCHHHHHHHHHHHCTTCEEEEECCST-TTCCC------CCCEEECSSCCH
T ss_pred ecccHHHHHHHHh-cCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEeCCC-cHHHHHHHHhCCccEEEeCCCCH
Confidence 3455554333222 134688888654322 12223343332 2345666655443 33456678899999999999999
Q ss_pred HHHHH
Q 024251 194 KAVLA 198 (270)
Q Consensus 194 ~~v~~ 198 (270)
.++.+
T Consensus 111 ~~L~~ 115 (141)
T 3cu5_A 111 SEIMD 115 (141)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 189
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha}
Probab=56.66 E-value=25 Score=32.23 Aligned_cols=31 Identities=10% Similarity=0.028 Sum_probs=26.0
Q ss_pred CcEEEEEeCchhHHHHHHHhCCcE-----EEEcCcc
Q 024251 50 PKRVWIWTESKQVMTAAVERGWNT-----FVFLSEN 80 (270)
Q Consensus 50 ~K~vWiw~~~Ke~vT~ALEsG~d~-----~vv~~~~ 80 (270)
-...|....+.+.+..|..+|+|. ++++-||
T Consensus 22 l~rs~l~~~~~~~~eka~~~~aD~~~~~~vilDLED 57 (332)
T 3qqw_A 22 LAACEHFAGSEKLIGKAMDLQVEYGPVFDVTCDCED 57 (332)
T ss_dssp CCSEEEEECSHHHHHHHHHHHHHHCSSEEEEEEHHH
T ss_pred ccHHHHhcCCHHHHHHHHhCCCCcCCCCcEEEECCC
Confidence 445788888899999999999999 9988665
No 190
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=55.29 E-value=24 Score=30.99 Aligned_cols=112 Identities=17% Similarity=0.073 Sum_probs=66.6
Q ss_pred chhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~ 132 (270)
--++...+.+.|++++=+-.++ .+..+.+.+- +=-|+..+| -|.++.+++++.. ..
T Consensus 67 p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~-v~lPvl~kd---------------fI~d~~qi~~a~~--~G 128 (254)
T 1vc4_A 67 PVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREA-VDLPLLRKD---------------FVVDPFMLEEARA--FG 128 (254)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHH-CCSCEEEES---------------CCCSHHHHHHHHH--TT
T ss_pred HHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHh-cCCCEEECC---------------cCCCHHHHHHHHH--cC
Confidence 3678889999999987764321 2222222211 001222222 1356666655333 46
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
++.|++...+-+ =-++.++.....-+-..+.++++.+|++ .+++.|+|=|-+.+.+
T Consensus 129 AD~VlL~~~~l~-~~l~~l~~~a~~lGl~~lvev~~~~E~~---~a~~~gad~IGvn~~~ 184 (254)
T 1vc4_A 129 ASAALLIVALLG-ELTGAYLEEARRLGLEALVEVHTERELE---IALEAGAEVLGINNRD 184 (254)
T ss_dssp CSEEEEEHHHHG-GGHHHHHHHHHHHTCEEEEEECSHHHHH---HHHHHTCSEEEEESBC
T ss_pred CCEEEECccchH-HHHHHHHHHHHHCCCeEEEEECCHHHHH---HHHHcCCCEEEEcccc
Confidence 788888665444 3466666633233557889999999987 5677899988776643
No 191
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=55.08 E-value=53 Score=23.22 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=40.7
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
..+.++++..-... .--.++..+.. ....++......+ ......+++.|++|.+.+|-++.++.+
T Consensus 49 ~~dlvi~D~~l~~~-~g~~l~~~l~~~~~~~~~~ii~~s~~~~-~~~~~~~~~~ga~~~l~KP~~~~~l~~ 117 (128)
T 1jbe_A 49 GYGFVISDWNMPNM-DGLELLKTIRAXXAMSALPVLMVTAEAK-KENIIAAAQAGASGYVVKPFTAATLEE 117 (128)
T ss_dssp CCCEEEEESCCSSS-CHHHHHHHHHC--CCTTCCEEEEESSCC-HHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHhhcccCCCcEEEEecCcc-HHHHHHHHHhCcCceeecCCCHHHHHH
Confidence 46788886553322 22234554443 2345665544433 345678899999999999999987654
No 192
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=55.07 E-value=17 Score=26.48 Aligned_cols=80 Identities=9% Similarity=0.130 Sum_probs=42.7
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
..+.++.-..... ...+.++++..-...=.+ .++..+.. ....++...... +......+++.|++|++.+|-+
T Consensus 32 ~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~-~~~~~l~~~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~ 108 (140)
T 3n53_A 32 SKNEKEALEQIDH-HHPDLVILDMDIIGENSP-NLCLKLKRSKGLKNVPLILLFSSE-HKEAIVNGLHSGADDYLTKPFN 108 (140)
T ss_dssp ESSHHHHHHHHHH-HCCSEEEEETTC-------CHHHHHHTSTTCTTCCEEEEECC-----CTTTTTTCCCSEEEESSCC
T ss_pred eCCHHHHHHHHhc-CCCCEEEEeCCCCCCcHH-HHHHHHHcCcccCCCCEEEEecCC-CHHHHHHHHhcCCCeeeeCCCC
Confidence 3454443332222 346788886542221111 22222222 345666655543 3455678899999999999999
Q ss_pred HHHHHHH
Q 024251 193 VKAVLAL 199 (270)
Q Consensus 193 ~~~v~~l 199 (270)
+.++.+.
T Consensus 109 ~~~l~~~ 115 (140)
T 3n53_A 109 RNDLLSR 115 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876543
No 193
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=54.84 E-value=88 Score=26.59 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=24.8
Q ss_pred CCHHHHHHH-HHHHhcccCeEEEec-CCHHHHHHHHHh
Q 024251 167 KTPSEAQIF-LEALEQGLGGIVLKV-EDVKAVLALKEY 202 (270)
Q Consensus 167 ~~~~eA~~~-l~~LE~G~DGVvl~~-~d~~~v~~l~~~ 202 (270)
.+.++...+ ..+.+.|+|-|.+.+ -|++.++++++.
T Consensus 163 ~~~~~~~~~a~~a~~~Gad~i~~~~~~~~~~l~~i~~~ 200 (273)
T 2qjg_A 163 RDPELVAHAARLGAELGADIVKTSYTGDIDSFRDVVKG 200 (273)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCCSSHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHh
Confidence 455555444 678899999998885 467766666553
No 194
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=54.63 E-value=12 Score=33.12 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=27.7
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+-+.|++|| .+++.|...++.|+|+|+.+..
T Consensus 266 ~~Gl~V~~WTVn~~~~~~~l~~~GVDgIiTD~P 298 (313)
T 3l12_A 266 DLGLIVLTWTVNEPEDIRRMATTGVDGIVTDYP 298 (313)
T ss_dssp HTTCEEEEBCCCSHHHHHHHHHHTCSEEEESCH
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCH
Confidence 4567899999 6799999999999999998653
No 195
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=54.17 E-value=10 Score=32.60 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=33.6
Q ss_pred CeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 143 WQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 143 WtiIPlENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
+..+. +.+++.++..+-++++ .++++++++. .++.|+|||+ ||+|+.+.+
T Consensus 195 ~~~~~-~~~v~~~~~~G~~v~~WTvn~~~~~~~---l~~~GVdgIi--TD~P~~~~~ 245 (252)
T 3qvq_A 195 QSFFD-VQQVSDIKAAGYKVLAFTINDESLALK---LYNQGLDAVF--SDYPQKIQS 245 (252)
T ss_dssp GGGCC-HHHHHHHHHTTCEEEEECCCCHHHHHH---HHHTTCCEEE--ESSHHHHHH
T ss_pred hhhCC-HHHHHHHHHCCCEEEEEcCCCHHHHHH---HHHcCCCEEE--eCCHHHHHH
Confidence 34443 4567777666666655 4677776655 4578999998 888886544
No 196
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=53.84 E-value=15 Score=31.29 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=27.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
++.+.+|+|+ .+++.+...++.|+|+|+.+..
T Consensus 205 ~~G~~v~~wTvn~~~~~~~l~~~GvdgI~TD~p 237 (247)
T 2otd_A 205 DAGLRILVYTVNKPQHAAELLRWGVDCICTDAI 237 (247)
T ss_dssp HTTCEEEEECCCCHHHHHHHHHHTCSEEEESCT
T ss_pred HCCCEEEEEccCCHHHHHHHHHcCCCEEEeCCH
Confidence 4568899999 6789999999999999998653
No 197
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=53.61 E-value=61 Score=23.47 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=39.6
Q ss_pred CCceEEEeCCCCeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.+|++..-.. ..--.++..+... ...|+......+ ....+++.|++|++.+|-++.++.+.
T Consensus 55 ~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~---~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (143)
T 2qv0_A 55 KVDAIFLDINIPS-LDGVLLAQNISQFAHKPFIVFITAWKE---HAVEAFELEAFDYILKPYQESRIINM 120 (143)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHTTSTTCCEEEEEESCCT---THHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHccCCCceEEEEeCCHH---HHHHHHhCCcceEEeCCCCHHHHHHH
Confidence 4678888554332 2222344444332 334665555533 45678899999999999999876543
No 198
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=52.94 E-value=1.2e+02 Score=26.69 Aligned_cols=111 Identities=11% Similarity=-0.033 Sum_probs=59.0
Q ss_pred EEEEeCchhHHHHHHHhCCcEE-EEcC---c-----------chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEe
Q 024251 53 VWIWTESKQVMTAAVERGWNTF-VFLS---E-----------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV 117 (270)
Q Consensus 53 vWiw~~~Ke~vT~ALEsG~d~~-vv~~---~-----------~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V 117 (270)
+..+....+++..+.+.|++.+ ++.+ . +.+..+++.+. -+.++ .+.+
T Consensus 24 ~i~~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~----------------~~iPv--~~k~ 85 (305)
T 2nv1_A 24 VIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNA----------------VSIPV--MAKA 85 (305)
T ss_dssp EEEEESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHH----------------CSSCE--EEEE
T ss_pred eeecCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHh----------------CCCCE--Eecc
Confidence 4446677899999999999999 5531 0 12222222111 11121 1222
Q ss_pred cC--hhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 118 ST--PQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 118 ~~--~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
.. .++.+.+.. ..++.|+. ..+-+.-.+..++. .+.-+..++..+.+++|+..+ ++.|+|-|.+
T Consensus 86 r~g~~~~~~~~~a--~GAd~V~~-~~~l~~~~~~~~i~-~~~~g~~v~~~~~~~~e~~~a---~~~Gad~V~~ 151 (305)
T 2nv1_A 86 RIGHIVEARVLEA--MGVDYIDE-SEVLTPADEEFHLN-KNEYTVPFVCGCRDLGEATRR---IAEGASMLRT 151 (305)
T ss_dssp CTTCHHHHHHHHH--HTCSEEEE-CTTSCCSCSSCCCC-GGGCSSCEEEEESSHHHHHHH---HHTTCSEEEE
T ss_pred cccchHHHHHHHH--CCCCEEEE-eccCCHHHHHHHHH-HhccCCcEEEEeCCHHHHHHH---HHCCCCEEEe
Confidence 22 333333332 35677752 22211111223332 112356799999999998766 4889999888
No 199
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=52.60 E-value=26 Score=25.13 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=44.3
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc---CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q---~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
...+.++.-..... .+.+.++++..-... .--.++..++ .....++...... +......+++.|++|.+.+|-+
T Consensus 33 ~~~~~~~a~~~~~~-~~~dlvllD~~l~~~-~g~~~~~~l~~~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~ 109 (130)
T 1dz3_A 33 TAYNGQDCLQMLEE-KRPDILLLDIIMPHL-DGLAVLERIRAGFEHQPNVIMLTAFG-QEDVTKKAVELGASYFILKPFD 109 (130)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSSS-CHHHHHHHHHHHCSSCCEEEEEEETT-CHHHHHHHHHTTCEEEEECSSC
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCCC-CHHHHHHHHHhcCCCCCcEEEEecCC-CHHHHHHHHHcCCCEEEeCCCC
Confidence 34555443332222 346888886553321 1122333332 2234455444332 3445677899999999999999
Q ss_pred HHHHHH
Q 024251 193 VKAVLA 198 (270)
Q Consensus 193 ~~~v~~ 198 (270)
+.++.+
T Consensus 110 ~~~l~~ 115 (130)
T 1dz3_A 110 MENLAH 115 (130)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 887654
No 200
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=52.41 E-value=19 Score=31.53 Aligned_cols=127 Identities=14% Similarity=0.112 Sum_probs=66.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhh-hhhccceeeeeeeeecCCccccCC---------CCeEEEEEEecChhhhhhhc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSENQQL-AIDWSTIALLDPLFIKEGEVYDSG---------DRRVGSIIEVSTPQELQQLQ 127 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~~e~-a~~l~~i~~i~~l~~~~g~~~~~~---------gk~v~~~v~V~~~ed~e~~~ 127 (270)
.....+..+.+.|+|.+.|..+.-+. .+-+. .+++. |+++|+-+.-.++. +.+.
T Consensus 80 ~p~~~i~~~~~aGAd~itvH~ea~~~~~~~i~--------------~i~~~~~~~~~~~~g~~~gv~l~p~Tp~--~~l~ 143 (237)
T 3cu2_A 80 NQLEVAKAVVANGANLVTLQLEQYHDFALTIE--------------WLAKQKTTYANQVYPVLIGACLCPETPI--SELE 143 (237)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTCTTSHHHHHH--------------HHTTCEEEETTEEEECEEEEEECTTSCG--GGGT
T ss_pred CHHHHHHHHHHcCCCEEEEecCCcccHHHHHH--------------HHHhcccccccccCCceEEEEEeCCChH--HHHH
Confidence 45678999999999998887642111 11111 12334 56667665444543 3444
Q ss_pred cccCCCceEEE-----eCCCCeeec--hhhh---hhcccCCC-ceEEEEcCCHHHHHHHHHHHh--cccCeEEEecC---
Q 024251 128 PADGQAENIVI-----DLPDWQVIP--AENI---VASFQGSG-KTVFAISKTPSEAQIFLEALE--QGLGGIVLKVE--- 191 (270)
Q Consensus 128 ~~~~~~~~vvv-----~~~DWtiIP--lENl---IA~~q~~~-~~i~a~v~~~~eA~~~l~~LE--~G~DGVvl~~~--- 191 (270)
......|++.+ -|..-+.+| +|.| -+..+..+ .-.+..-.-.. .+.+-...+ .|+|+++.-..
T Consensus 144 ~~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf~ 222 (237)
T 3cu2_A 144 PYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALFS 222 (237)
T ss_dssp TTTTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGGS
T ss_pred HHhhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHhC
Confidence 44456888877 222334454 4433 12211111 12233333222 234445678 89999998643
Q ss_pred -CHH-HHHHHHH
Q 024251 192 -DVK-AVLALKE 201 (270)
Q Consensus 192 -d~~-~v~~l~~ 201 (270)
|+. .+++|++
T Consensus 223 ~d~~~~~~~l~~ 234 (237)
T 3cu2_A 223 GELKTNLKVWKS 234 (237)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 653 3445544
No 201
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=52.33 E-value=14 Score=31.61 Aligned_cols=31 Identities=0% Similarity=-0.027 Sum_probs=26.4
Q ss_pred CCCcEEEEEe-CchhHHHH-HHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-ESKQVMTA-AVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~-ALEsG~d~~vv~~ 78 (270)
++.+.+|+|+ .+++.+.. .++.|+|+|+.+.
T Consensus 192 ~~G~~v~~wTvn~~~~~~~~l~~~GvdgIiTD~ 224 (248)
T 1zcc_A 192 KAGLEIMVYYGGDDMAVHREIATSDVDYINLDR 224 (248)
T ss_dssp HHTCEEEEECCCCCHHHHHHHHHSSCSEEEESC
T ss_pred HCCCEEEEECCCCHHHHHHHHHHcCCCEEEECC
Confidence 4567899999 57888899 9999999999865
No 202
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=52.33 E-value=46 Score=27.34 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=59.5
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhcccc
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN--------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~--------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~ 130 (270)
..+.+..+++.|+|.+.+.... .+..+.+.+. . .|+.++ +.+.++++...+..
T Consensus 77 ~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~-------------~--~~~~v~--~~~~t~~e~~~~~~-- 137 (223)
T 1y0e_A 77 TSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTH-------------A--PNVEIM--ADIATVEEAKNAAR-- 137 (223)
T ss_dssp SHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHH-------------C--TTSEEE--EECSSHHHHHHHHH--
T ss_pred cHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHh-------------C--CCceEE--ecCCCHHHHHHHHH--
Confidence 4567888999999998876432 1222222221 0 033332 36677776554332
Q ss_pred CCCceEEEeCCCCe--------eec-hhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 131 GQAENIVIDLPDWQ--------VIP-AENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 131 ~~~~~vvv~~~DWt--------iIP-lENlIA~~q-~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
...+++.+.....+ .-| ++ ++.++. ..+..|++ .+.++++++.++ +.|+|||++-..
T Consensus 138 ~G~d~i~~~~~g~t~~~~~~~~~~~~~~-~~~~~~~~~~ipvia~GGI~~~~~~~~~~---~~Gad~v~vG~a 206 (223)
T 1y0e_A 138 LGFDYIGTTLHGYTSYTQGQLLYQNDFQ-FLKDVLQSVDAKVIAEGNVITPDMYKRVM---DLGVHCSVVGGA 206 (223)
T ss_dssp TTCSEEECTTTTSSTTSTTCCTTHHHHH-HHHHHHHHCCSEEEEESSCCSHHHHHHHH---HTTCSEEEECHH
T ss_pred cCCCEEEeCCCcCcCCCCCCCCCcccHH-HHHHHHhhCCCCEEEecCCCCHHHHHHHH---HcCCCEEEEChH
Confidence 34677765321111 111 22 233221 12345665 467888887765 469999998754
No 203
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=52.11 E-value=11 Score=32.33 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=31.1
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 149 ENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
+.+|++++..+-++++ .++++++++.+ ++.|+|||+ ||+|..+.+
T Consensus 186 ~~~v~~~~~~G~~v~~WTVn~~~~~~~l---~~~GVdgIi--TD~P~~~~~ 231 (238)
T 3no3_A 186 PDWVKDCKVLGMTSNVWTVDDPKLMEEM---IDMGVDFIT--TDLPEETQK 231 (238)
T ss_dssp TTHHHHHHHTTCEEEEECCCSHHHHHHH---HHHTCSEEE--ESCHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHH---HHcCCCEEE--CCCHHHHHH
Confidence 3567777666666544 46777666654 578999998 788986554
No 204
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=52.00 E-value=32 Score=26.53 Aligned_cols=104 Identities=10% Similarity=-0.052 Sum_probs=56.4
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
+.++....+.|.+-++++++..+..+.+.... ..|.. ......++++.++.+ ...+++.+|+-
T Consensus 16 ~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~--------------~~~~~-~i~gd~~~~~~l~~a--~i~~ad~vi~~ 78 (153)
T 1id1_A 16 INTILQLNQRGQNVTVISNLPEDDIKQLEQRL--------------GDNAD-VIPGDSNDSSVLKKA--GIDRCRAILAL 78 (153)
T ss_dssp HHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH--------------CTTCE-EEESCTTSHHHHHHH--TTTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEECCChHHHHHHHHhh--------------cCCCe-EEEcCCCCHHHHHHc--ChhhCCEEEEe
Confidence 55666667789887777664333332222110 01111 112223444444433 23567888885
Q ss_pred CCCCeeechhhhhhc----ccCCCceEEEEcCCHHHHHHHHHHHhcccCeEE
Q 024251 140 LPDWQVIPAENIVAS----FQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (270)
Q Consensus 140 ~~DWtiIPlENlIA~----~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVv 187 (270)
..+- -.|+... -.....+|++.+++++..+.+ .+.|+|-|+
T Consensus 79 ~~~d----~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l---~~~G~~~vi 123 (153)
T 1id1_A 79 SDND----ADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKI---KMVHPDIIL 123 (153)
T ss_dssp SSCH----HHHHHHHHHHHHHTSSSCEEEECSSGGGHHHH---HTTCCSEEE
T ss_pred cCCh----HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH---HHcCCCEEE
Confidence 5542 2343321 112346899999999988765 457999766
No 205
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=51.39 E-value=22 Score=33.28 Aligned_cols=102 Identities=10% Similarity=0.057 Sum_probs=62.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
..+.....+.|.+-++++.+ .+.++++.+.+. . .++...++++-++.+- ..+++.+|+-
T Consensus 17 ~~va~~L~~~g~~vvvId~d-~~~v~~~~~~g~-----------------~-vi~GDat~~~~L~~ag--i~~A~~viv~ 75 (413)
T 3l9w_A 17 QITGRLLLSSGVKMVVLDHD-PDHIETLRKFGM-----------------K-VFYGDATRMDLLESAG--AAKAEVLINA 75 (413)
T ss_dssp HHHHHHHHHTTCCEEEEECC-HHHHHHHHHTTC-----------------C-CEESCTTCHHHHHHTT--TTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEECC-HHHHHHHHhCCC-----------------e-EEEcCCCCHHHHHhcC--CCccCEEEEC
Confidence 45666666789998887764 555555443311 1 1232334555544432 3467888886
Q ss_pred CCCCeeechhhhhhc----ccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 140 LPDWQVIPAENIVAS----FQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 140 ~~DWtiIPlENlIA~----~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
..| +-.|+... -.+.+.+|++.+++.+.+..+ .+.|+|-|+-.
T Consensus 76 ~~~----~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L---~~~Gad~Vi~~ 122 (413)
T 3l9w_A 76 IDD----PQTNLQLTEMVKEHFPHLQIIARARDVDHYIRL---RQAGVEKPERE 122 (413)
T ss_dssp CSS----HHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHH---HHTTCSSCEET
T ss_pred CCC----hHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH---HHCCCCEEECc
Confidence 665 34454322 223456899999999998876 46899988743
No 206
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=51.37 E-value=45 Score=31.68 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=64.9
Q ss_pred chhHHHHHHHhCCcEEEEcCc--ch----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCC
Q 024251 59 SKQVMTAAVERGWNTFVFLSE--NQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~--~~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~ 132 (270)
..+.+..++|.|+|.+.+... +. +.++++.+.- | +.++.. ..+.+.++.+.+... .
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~---~------------~~pvi~-~~v~t~~~a~~l~~a--G 317 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKY---P------------HLQVIG-GNVVTAAQAKNLIDA--G 317 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHC---T------------TCEEEE-EEECSHHHHHHHHHH--T
T ss_pred hHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhC---C------------CCceEe-cccchHHHHHHHHHc--C
Confidence 467888899999999998432 11 2222222210 0 222221 256788876555543 5
Q ss_pred CceEEEeCC-C----------Ce---eechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 133 AENIVIDLP-D----------WQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 133 ~~~vvv~~~-D----------Wt---iIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
++.+++... + |- ...++.+-+..+..+..|++ .+.+++++..++ +.|+|+|.+-..
T Consensus 318 ad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kal---a~GAd~V~iG~~ 389 (514)
T 1jcn_A 318 VDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKAL---ALGASTVMMGSL 389 (514)
T ss_dssp CSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred CCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH---HcCCCeeeECHH
Confidence 788888220 1 21 22233333333333567888 788998887665 469999998763
No 207
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=51.33 E-value=42 Score=25.97 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=55.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhcc-ceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWS-TIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~-~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
..+.....+.|.+-++++.+ .+..+.+. .. |.. .+.....+++.++.+ ....++.+|+
T Consensus 32 ~~la~~L~~~g~~V~vid~~-~~~~~~~~~~~-----------------g~~-~~~~d~~~~~~l~~~--~~~~ad~Vi~ 90 (155)
T 2g1u_A 32 SLIANLASSSGHSVVVVDKN-EYAFHRLNSEF-----------------SGF-TVVGDAAEFETLKEC--GMEKADMVFA 90 (155)
T ss_dssp HHHHHHHHHTTCEEEEEESC-GGGGGGSCTTC-----------------CSE-EEESCTTSHHHHHTT--TGGGCSEEEE
T ss_pred HHHHHHHHhCCCeEEEEECC-HHHHHHHHhcC-----------------CCc-EEEecCCCHHHHHHc--CcccCCEEEE
Confidence 55667777889876666543 34444333 22 111 011111233333322 1345788887
Q ss_pred eCCCCeee-chhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 139 DLPDWQVI-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 139 ~~~DWtiI-PlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
-..+.... .+-.+...+ ....++++.+++++..+.+. +.|+| ++.|..
T Consensus 91 ~~~~~~~~~~~~~~~~~~-~~~~~iv~~~~~~~~~~~l~---~~G~~--vi~p~~ 139 (155)
T 2g1u_A 91 FTNDDSTNFFISMNARYM-FNVENVIARVYDPEKIKIFE---ENGIK--TICPAV 139 (155)
T ss_dssp CSSCHHHHHHHHHHHHHT-SCCSEEEEECSSGGGHHHHH---TTTCE--EECHHH
T ss_pred EeCCcHHHHHHHHHHHHH-CCCCeEEEEECCHHHHHHHH---HCCCc--EEcHHH
Confidence 65553322 122222221 33568999999999877543 48999 566653
No 208
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=50.70 E-value=1e+02 Score=28.75 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=62.0
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc--h----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccC
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN--Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~--~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~ 131 (270)
...+.+..++|.|+|.+.++..+ . +.++.+.+. .+ +.++.. ..|.++++...+.. .
T Consensus 100 ~~~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~-------------~~--~~~Vi~-G~V~T~e~A~~a~~--a 161 (361)
T 3r2g_A 100 NELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQL-------------LG--SRCIMA-GNVATYAGADYLAS--C 161 (361)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHH-------------HT--TCEEEE-EEECSHHHHHHHHH--T
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHh-------------cC--CCeEEE-cCcCCHHHHHHHHH--c
Confidence 35789999999999987775321 1 112111111 00 222211 15788887555543 4
Q ss_pred CCceEEEeCC---CCe-------eechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 132 QAENIVIDLP---DWQ-------VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 132 ~~~~vvv~~~---DWt-------iIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.+|.|++... -++ -+|.=..|.+.-.....|++ .+.+..++..+ |+.|+|+|++-..
T Consensus 162 GaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~PVIAdGGI~~~~di~kA---La~GAd~V~iGr~ 230 (361)
T 3r2g_A 162 GADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADRSIVADGGIKTSGDIVKA---LAFGADFVMIGGM 230 (361)
T ss_dssp TCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSSEEEEESCCCSHHHHHHH---HHTTCSEEEESGG
T ss_pred CCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCCCEEEECCCCCHHHHHHH---HHcCCCEEEEChH
Confidence 6888888322 111 14432233332222126776 57777777655 5579999998654
No 209
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=50.06 E-value=65 Score=25.31 Aligned_cols=66 Identities=8% Similarity=0.109 Sum_probs=39.0
Q ss_pred CCceEEEeCCCCeeechhhhhhccc-CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ-GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q-~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-...=-+ .++..+. .....++..... .+......+++.|++|.+.+|-++.++...
T Consensus 58 ~~dlvi~D~~~p~~~g~-~~~~~l~~~~~~pii~lt~~-~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 124 (205)
T 1s8n_A 58 KPDLVIMDVKMPRRDGI-DAASEIASKRIAPIVVLTAF-SQRDLVERARDAGAMAYLVKPFSISDLIPA 124 (205)
T ss_dssp CCSEEEEESSCSSSCHH-HHHHHHHHTTCSCEEEEEEG-GGHHHHHTTGGGSCEEEEEESCCHHHHHHH
T ss_pred CCCEEEEeCCCCCCChH-HHHHHHHhcCCCCEEEEecC-CCHHHHHHHHhcCCcEEEeCCCCHHHHHHH
Confidence 46778886543322122 2222222 122355544433 345666789999999999999999876543
No 210
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=50.01 E-value=81 Score=28.62 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=49.8
Q ss_pred EEEEecChhhhhhhccccCCCceEEEeCCCCeeec------hhhhhhcccC---CCceEEEEcCCHHH---HHHHHHHHh
Q 024251 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP------AENIVASFQG---SGKTVFAISKTPSE---AQIFLEALE 180 (270)
Q Consensus 113 ~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIP------lENlIA~~q~---~~~~i~a~v~~~~e---A~~~l~~LE 180 (270)
.|+.=.+++-++.+.. ...|.||++..|= +.| .+|+.+.++. .+..++..+++.+- ..-+..+|.
T Consensus 49 L~vP~~~p~~~eka~~--~gaD~vilDLEDa-V~~~~k~~Ar~~l~~~l~~~~~~~~~~~VRVn~~~t~~~~~Dl~~~l~ 125 (316)
T 3qll_A 49 LFTPATRSDRFAKAAE--NGADVAIIDLEDS-VSQADKEQARQKAISYLSSRPATSLPLALRINGLDTRAGIEDIHALLE 125 (316)
T ss_dssp EEEESCC------------CCSEEEEECSTT-SCGGGHHHHHHHHHC---------CCEEEECCCTTSHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHhh--CCCCEEEEeCCCC-CCCcCHHHHHHHHHHHHhcccccCCeEEEEECCCCCchhHHHHHHHHh
Confidence 3333344544444332 4689999988874 223 2455554433 23679999998651 233445677
Q ss_pred ccc--CeEEEe-cCCHHHHHHHHHhhcc
Q 024251 181 QGL--GGIVLK-VEDVKAVLALKEYFDG 205 (270)
Q Consensus 181 ~G~--DGVvl~-~~d~~~v~~l~~~~~~ 205 (270)
.|. |||+|+ .+++++++.+.+.+..
T Consensus 126 ~g~~~~gIvlPKvesa~~v~~~~~~l~~ 153 (316)
T 3qll_A 126 CGSLPDYLVLPKTESAAHLQILDRLMMF 153 (316)
T ss_dssp SCCCCSEEEETTCCSHHHHHHHHHHTSC
T ss_pred CCCCCCEEEeCCCCCHHHHHHHHHHHHh
Confidence 775 999997 4678999888887743
No 211
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=48.93 E-value=18 Score=30.23 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=57.4
Q ss_pred eeeeeeecCCccccC-CCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCC---eeechhhhhhcccC-CCceEEE--
Q 024251 92 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW---QVIPAENIVASFQG-SGKTVFA-- 164 (270)
Q Consensus 92 ~i~~l~~~~g~~~~~-~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DW---tiIPlENlIA~~q~-~~~~i~a-- 164 (270)
+|..|.+.+|..+.. +|+.--.. ...++.++-+.... +.++++-+...|. ...+. .+|.++-. .+..++.
T Consensus 5 iip~id~~~g~~V~~~~g~~~~~~-~~~d~~~~a~~~~~-~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~g 81 (244)
T 2y88_A 5 LLPAVNVVEGRAVRLVQGKAGSQT-EYGSAVDAALGWQR-DGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSG 81 (244)
T ss_dssp EEEEEEEETTEEEEEETTEEEEEE-EEEEHHHHHHHHHH-TTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEES
T ss_pred EEEEEEeECCEEEEeeccccccce-ecCCHHHHHHHHHH-cCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEEC
Confidence 455577788877763 34332222 23355444333322 3578887764332 22334 55554422 2334544
Q ss_pred EcCCHHHHHHHHHHHhcccCeEEEecC---CHHHHHHHHHh
Q 024251 165 ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEY 202 (270)
Q Consensus 165 ~v~~~~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~~~ 202 (270)
-+.++++++.+ ++.|+|+|++... +|..+.++.+.
T Consensus 82 gi~~~~~~~~~---l~~Gad~V~lg~~~l~~p~~~~~~~~~ 119 (244)
T 2y88_A 82 GIRDDESLAAA---LATGCARVNVGTAALENPQWCARVIGE 119 (244)
T ss_dssp SCCSHHHHHHH---HHTTCSEEEECHHHHHCHHHHHHHHHH
T ss_pred CCCCHHHHHHH---HHcCCCEEEECchHhhChHHHHHHHHH
Confidence 35788876555 5579999999985 55555554443
No 212
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=48.76 E-value=20 Score=30.02 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=52.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~---~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
-+.+..|++.|++.+-+...+ .+..+.+..+ .. .-| +..+ |. ++.+ ++.. ...+.|
T Consensus 16 ~~~~~~a~~~Gv~~v~lr~k~~~~~~~~~~i~~l---~~----------~~~--~~li--vn--d~~~-~A~~-~gadgv 74 (210)
T 3ceu_A 16 DKIITALFEEGLDILHLRKPETPAMYSERLLTLI---PE----------KYH--RRIV--TH--EHFY-LKEE-FNLMGI 74 (210)
T ss_dssp HHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHS---CG----------GGG--GGEE--ES--SCTT-HHHH-TTCSEE
T ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHH---HH----------HhC--CeEE--Ee--CCHH-HHHH-cCCCEE
Confidence 378999999999999988543 1222222111 10 011 1122 22 2212 2222 245666
Q ss_pred EEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 137 vv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
-+...|.. ..+ + .+.-+...+.|++|++.+ . .|+|-|.+.|
T Consensus 75 hl~~~~~~---~~~--~----~~~~ig~s~~t~~e~~~A---~-~GaDyv~~g~ 115 (210)
T 3ceu_A 75 HLNARNPS---EPH--D----YAGHVSCSCHSVEEVKNR---K-HFYDYVFMSP 115 (210)
T ss_dssp ECCSSSCS---CCT--T----CCSEEEEEECSHHHHHTT---G-GGSSEEEECC
T ss_pred EECccccc---ccc--c----cCCEEEEecCCHHHHHHH---h-hCCCEEEECC
Confidence 66444442 211 1 244688889999998766 3 6999998644
No 213
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=48.51 E-value=19 Score=26.40 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=38.0
Q ss_pred CCceEEEeCCCCeeechhhhhhccc---CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q---~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-+..=-+ .++..+. .....|+......+ ......+++.|++|.+.+|-++.++.+.
T Consensus 52 ~~dlvllD~~mp~~~G~-~~~~~lr~~~~~~~~ii~lt~~~~-~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 120 (133)
T 2r25_B 52 NYNMIFMDVQMPKVDGL-LSTKMIRRDLGYTSPIVALTAFAD-DSNIKECLESGMNGFLSKPIKRPKLKTI 120 (133)
T ss_dssp CCSEEEECSCCSSSCHH-HHHHHHHHHSCCCSCEEEEESCCS-HHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCCCChH-HHHHHHHhhcCCCCCEEEEECCCC-HHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 45777775432221111 2222221 22345555444332 3456688899999999999999876554
No 214
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*
Probab=48.39 E-value=19 Score=33.47 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=26.5
Q ss_pred CcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 024251 50 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 50 ~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~ 79 (270)
-++|++|| .+.+.|...++.|+|+|+.+.+
T Consensus 241 i~~V~vWTVNd~~~m~~l~~~GVDGIITD~P 271 (302)
T 3rlg_A 241 INKVYYWTVDKRSTTRDALDAGVDGIMTNYP 271 (302)
T ss_dssp CSEEEEECCCSHHHHHHHHHTTCSEEEESCH
T ss_pred eEEEEEEeCCCHHHHHHHHHcCCCEEECCCH
Confidence 47899999 6789999999999999998653
No 215
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=48.36 E-value=68 Score=25.24 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=58.0
Q ss_pred chhHHHHHHHh-CCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEE
Q 024251 59 SKQVMTAAVER-GWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (270)
Q Consensus 59 ~Ke~vT~ALEs-G~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vv 137 (270)
-..+.....+. |.+-++++.+ .+..+++... |.. .++....+++.++.+ ....+++.+|
T Consensus 51 G~~~a~~L~~~~g~~V~vid~~-~~~~~~~~~~-----------------g~~-~~~gd~~~~~~l~~~-~~~~~ad~vi 110 (183)
T 3c85_A 51 GTGAYDELRARYGKISLGIEIR-EEAAQQHRSE-----------------GRN-VISGDATDPDFWERI-LDTGHVKLVL 110 (183)
T ss_dssp HHHHHHHHHHHHCSCEEEEESC-HHHHHHHHHT-----------------TCC-EEECCTTCHHHHHTB-CSCCCCCEEE
T ss_pred HHHHHHHHHhccCCeEEEEECC-HHHHHHHHHC-----------------CCC-EEEcCCCCHHHHHhc-cCCCCCCEEE
Confidence 35566666777 9987777654 4444443322 111 011122334433322 0134678888
Q ss_pred EeCCCC-eeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 138 IDLPDW-QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 138 v~~~DW-tiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
+-..+. ..+.+-.++.. .+...+|++.+.+.+.++.+ .+.|+|-|+....
T Consensus 111 ~~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~l---~~~G~~~vi~p~~ 161 (183)
T 3c85_A 111 LAMPHHQGNQTALEQLQR-RNYKGQIAAIAEYPDQLEGL---LESGVDAAFNIYS 161 (183)
T ss_dssp ECCSSHHHHHHHHHHHHH-TTCCSEEEEEESSHHHHHHH---HHHTCSEEEEHHH
T ss_pred EeCCChHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHH---HHcCCCEEEchHH
Confidence 755442 22222222222 23457899999999887744 3569997765444
No 216
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=47.83 E-value=13 Score=31.93 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=26.9
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
++.+.+|+|+ .+++.+...++.|+|+|+.+.
T Consensus 209 ~~G~~v~~wTvn~~~~~~~l~~~GvdgIiTD~ 240 (252)
T 2pz0_A 209 KNGVKLFPWTVDRKEDMERMIKAGVDGIITDD 240 (252)
T ss_dssp HTTCEECCBCCCSHHHHHHHHHHTCSEEEESC
T ss_pred HCCCEEEEECCCCHHHHHHHHHcCCCEEEcCC
Confidence 4567899999 678899999999999999865
No 217
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=47.76 E-value=67 Score=22.23 Aligned_cols=64 Identities=8% Similarity=0.112 Sum_probs=39.2
Q ss_pred CCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
.+.+.++++..-.. ..--.++..+. .....++......+.. ..+++.|++|.+.+|-++.++.+
T Consensus 44 ~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~~~---~~~~~~g~~~~l~Kp~~~~~l~~ 109 (116)
T 3a10_A 44 GNYDLVILDIEMPG-ISGLEVAGEIRKKKKDAKIILLTAYSHYR---SDMSSWAADEYVVKSFNFDELKE 109 (116)
T ss_dssp SCCSEEEECSCCSS-SCHHHHHHHHHHHCTTCCEEEEESCGGGG---GCGGGGGSSEEEECCSSTHHHHH
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHccCCCCeEEEEECCcchH---HHHHhccccceEECCCCHHHHHH
Confidence 34678888554322 12122333332 2345676666655443 67889999999999999887644
No 218
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=47.43 E-value=35 Score=28.44 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.5
Q ss_pred hhHHHHHHHhCCcEEEEcCc
Q 024251 60 KQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+.+..|.+.|+|.+.+..+
T Consensus 81 ~~~v~~~~~~Gad~v~vh~~ 100 (230)
T 1rpx_A 81 DQRVPDFIKAGADIVSVHCE 100 (230)
T ss_dssp HHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHcCCCEEEEEec
Confidence 35788899999999987764
No 219
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=46.92 E-value=19 Score=30.18 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=63.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~---------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
..+++..+.+.|++.+.+...+ .+.++++.+ .-+.++-.-.-|.++++.+.+...
T Consensus 33 ~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~----------------~~~iPvi~~Ggi~~~~~~~~~~~~ 96 (252)
T 1ka9_F 33 PVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAE----------------RVFIPLTVGGGVRSLEDARKLLLS 96 (252)
T ss_dssp HHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHT----------------TCCSCEEEESSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHH----------------hCCCCEEEECCcCCHHHHHHHHHc
Confidence 4678888999999988775321 111222221 112233333345778887776654
Q ss_pred cCCCceEEEeCCCCee-echhhhhhcccCCCceEEEEcC-----------C------HHHHHHHHHHHhcccCeEEEecC
Q 024251 130 DGQAENIVIDLPDWQV-IPAENIVASFQGSGKTVFAISK-----------T------PSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 130 ~~~~~~vvv~~~DWti-IPlENlIA~~q~~~~~i~a~v~-----------~------~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.++.|++-....+- -.++.+...+......+-..++ . .+-.+.+..+.+.|++++++.+.
T Consensus 97 --Gad~V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~ 174 (252)
T 1ka9_F 97 --GADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSM 174 (252)
T ss_dssp --TCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEET
T ss_pred --CCCEEEEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEecc
Confidence 37888884432110 0145555544211111222221 1 01123344455689999998743
Q ss_pred ---------CHHHHHHHHHh
Q 024251 192 ---------DVKAVLALKEY 202 (270)
Q Consensus 192 ---------d~~~v~~l~~~ 202 (270)
|.+.++++++.
T Consensus 175 ~~~g~~~g~~~~~i~~l~~~ 194 (252)
T 1ka9_F 175 DRDGTKEGYDLRLTRMVAEA 194 (252)
T ss_dssp TTTTTCSCCCHHHHHHHHHH
T ss_pred cCCCCcCCCCHHHHHHHHHH
Confidence 24555555553
No 220
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=46.91 E-value=18 Score=31.00 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=41.1
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
.+.+-+ ++..++-+.+++.++..+-++++ .++++++++.. .++.|+|||+ +|+|..+.++.+
T Consensus 171 ~~~i~~---~~~~~~~~~~v~~~~~~G~~v~~wTvn~~~~~~~~--l~~~GvdgIi--TD~p~~~~~~~~ 233 (248)
T 1zcc_A 171 ASIIEI---TPAQMRRPGIIEASRKAGLEIMVYYGGDDMAVHRE--IATSDVDYIN--LDRPDLFAAVRS 233 (248)
T ss_dssp CSEEEE---CHHHHHSHHHHHHHHHHTCEEEEECCCCCHHHHHH--HHHSSCSEEE--ESCHHHHHHHHH
T ss_pred CCEEEe---cHHHhCCHHHHHHHHHCCCEEEEECCCCHHHHHHH--HHHcCCCEEE--ECCHHHHHHHHH
Confidence 444444 45555345677777766666655 46777777651 3679999977 788987766554
No 221
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=46.46 E-value=22 Score=25.81 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=28.9
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecC-CHHHHHHH
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLAL 199 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~-d~~~v~~l 199 (270)
...|+......+ ......+++.|++|++.+|- ++.++.+.
T Consensus 86 ~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kP~~~~~~l~~~ 126 (137)
T 2pln_A 86 SIVVLVSSDNPT-SEEEVHAFEQGADDYIAKPYRSIKALVAR 126 (137)
T ss_dssp TSEEEEEESSCC-HHHHHHHHHTTCSEEEESSCSCHHHHHHH
T ss_pred CccEEEEeCCCC-HHHHHHHHHcCCceeeeCCCCCHHHHHHH
Confidence 455665554433 45667889999999999999 99876543
No 222
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=45.16 E-value=33 Score=28.78 Aligned_cols=107 Identities=11% Similarity=0.184 Sum_probs=58.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch---------hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhcc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSENQ---------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQP 128 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~~---------e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~ 128 (270)
+..+++..+.+.|++.+.+...+. +.++++. ..--|+.+.+ -|.++++.+.+..
T Consensus 31 ~~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~--~~~ipvi~~G---------------gi~~~~~~~~~~~ 93 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS--EFAEHIQIGG---------------GIRSLDYAEKLRK 93 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG--GGGGGEEEES---------------SCCSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH--hcCCcEEEEC---------------CCCCHHHHHHHHH
Confidence 346788999999999988864222 1222221 1101233332 3577888777554
Q ss_pred ccCCCceEEEeCCCCeeec----hhhhhhcccCCCceEE--EEcC---------------CHHHHHHHHHHHhcccCeEE
Q 024251 129 ADGQAENIVIDLPDWQVIP----AENIVASFQGSGKTVF--AISK---------------TPSEAQIFLEALEQGLGGIV 187 (270)
Q Consensus 129 ~~~~~~~vvv~~~DWtiIP----lENlIA~~q~~~~~i~--a~v~---------------~~~eA~~~l~~LE~G~DGVv 187 (270)
. .++.|++-.. .++ ++.+ ..+. .+++ ..++ ++.| .+..+.+.|++.|+
T Consensus 94 ~--Gad~V~lg~~---~l~~p~~~~~~-~~~g---~~i~~~~d~~~~~v~~~g~~~~~~~~~~e--~~~~~~~~G~~~i~ 162 (241)
T 1qo2_A 94 L--GYRRQIVSSK---VLEDPSFLKSL-REID---VEPVFSLDTRGGRVAFKGWLAEEEIDPVS--LLKRLKEYGLEEIV 162 (241)
T ss_dssp T--TCCEEEECHH---HHHCTTHHHHH-HTTT---CEEEEEEEEETTEECCTTCSSCSCCCHHH--HHHHHHTTTCCEEE
T ss_pred C--CCCEEEECch---HhhChHHHHHH-HHcC---CcEEEEEEecCCEEEECCceecCCCCHHH--HHHHHHhCCCCEEE
Confidence 3 4788888332 222 3344 3332 2333 2231 3333 34456789999999
Q ss_pred EecCC
Q 024251 188 LKVED 192 (270)
Q Consensus 188 l~~~d 192 (270)
+.+.+
T Consensus 163 ~t~~~ 167 (241)
T 1qo2_A 163 HTEIE 167 (241)
T ss_dssp EEETT
T ss_pred EEeec
Confidence 97743
No 223
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=44.60 E-value=15 Score=30.92 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=58.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccc
Q 024251 59 SKQVMTAAVERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~~---------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~ 129 (270)
-.+++..+.+.|++.+.+...+ .+.++++.+- -+.++-+-.-|.++++.+.+...
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~----------------~~ipvi~~ggI~~~~~~~~~~~~ 95 (253)
T 1thf_D 32 PVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQ----------------IDIPFTVGGGIHDFETASELILR 95 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTT----------------CCSCEEEESSCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHh----------------CCCCEEEeCCCCCHHHHHHHHHc
Confidence 3678888889999987765322 1111222211 11222222235678887776653
Q ss_pred cCCCceEEEeCCCCee-echhhhhhcccCCCceEEEEcC-----------C------HHHHHHHHHHHhcccCeEEEecC
Q 024251 130 DGQAENIVIDLPDWQV-IPAENIVASFQGSGKTVFAISK-----------T------PSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 130 ~~~~~~vvv~~~DWti-IPlENlIA~~q~~~~~i~a~v~-----------~------~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.++.|++....-+- --++.++..+......+-..+. . ..-.+.+..+++.|+++|++.+.
T Consensus 96 --Gad~V~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~ 173 (253)
T 1thf_D 96 --GADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSI 173 (253)
T ss_dssp --TCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEET
T ss_pred --CCCEEEEChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEec
Confidence 47888884432111 0155666654321111222221 1 01233445566789999999753
No 224
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=44.47 E-value=7.9 Score=33.61 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 166 SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 166 v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
+-+.++++.++ +.|+|||++...|+.-++..++
T Consensus 76 vl~~d~~~~A~---~aGAd~v~~p~~d~~v~~~ar~ 108 (224)
T 1vhc_A 76 VLTAEQVVLAK---SSGADFVVTPGLNPKIVKLCQD 108 (224)
T ss_dssp CCSHHHHHHHH---HHTCSEEECSSCCHHHHHHHHH
T ss_pred EeeHHHHHHHH---HCCCCEEEECCCCHHHHHHHHH
Confidence 44667777765 5699999988777765555444
No 225
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=43.90 E-value=60 Score=25.73 Aligned_cols=70 Identities=10% Similarity=0.265 Sum_probs=39.3
Q ss_pred CCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec---CCHHHHHHHHHhh
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 203 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~---~d~~~v~~l~~~~ 203 (270)
..+.++++..-.. ..--.++..+. .....+...+.+.. ......+++.|+++++.+| +....+..+.+.+
T Consensus 25 ~~dlvl~D~~~p~-~~g~~~~~~l~~~~~~~~i~vi~~~~~-~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 25 KPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKIIVCSAMGQ-QAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTF 99 (237)
T ss_dssp CCSCEEEECCSTT-SSHHHHHHHHHHHSSSCCEEEECCSST-HHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHhCCCCCEEEEECCCC-HHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHh
Confidence 4677888654322 11223344321 11223444333332 5566788999999999998 5556566666555
No 226
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=43.86 E-value=16 Score=31.98 Aligned_cols=31 Identities=16% Similarity=-0.055 Sum_probs=27.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
.+.+.|++|+ .+++.+...++.|+|+|+.+.
T Consensus 239 ~~G~~v~~wTvn~~~~~~~l~~~GVdgIiTD~ 270 (287)
T 2oog_A 239 DLGFIVHPYTVNEKADMLRLNKYGVDGVFTNF 270 (287)
T ss_dssp HTTCEECCBCCCSHHHHHHHHHHTCSEEEESC
T ss_pred HCCCeEEEEeCCCHHHHHHHHHcCCCEEEeCC
Confidence 4567899999 679999999999999999865
No 227
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=43.78 E-value=16 Score=31.36 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~ 78 (270)
++-+.+|+|+ .+++.+...++.|+|+|+.+.
T Consensus 234 ~~Gl~v~~wTvn~~~~~~~l~~~GvdgIiTD~ 265 (272)
T 3ch0_A 234 KLGMRVIPWTVNTKEEIETLISLGVDGIITDY 265 (272)
T ss_dssp HTTCEECCBCCCSHHHHHHHHHHTCSEEEESC
T ss_pred HcCCEEEEeccCCHHHHHHHHHcCCCEEEeCC
Confidence 4567899999 678889999999999999865
No 228
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=43.72 E-value=22 Score=24.26 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=43.8
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
..+.++....... ...+.++++..-.. ..-..++..+.. ....++......+.. ..++.|+++++.+|-+
T Consensus 31 ~~~~~~~~~~l~~-~~~dlii~d~~~~~-~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~----~~~~~g~~~~l~kp~~ 104 (119)
T 2j48_A 31 LVDGSTALDQLDL-LQPIVILMAWPPPD-QSCLLLLQHLREHQADPHPPLVLFLGEPPVD----PLLTAQASAILSKPLD 104 (119)
T ss_dssp ESCHHHHHHHHHH-HCCSEEEEECSTTC-CTHHHHHHHHHHTCCCSSCCCEEEESSCCSS----HHHHHHCSEECSSCST
T ss_pred ecCHHHHHHHHHh-cCCCEEEEecCCCC-CCHHHHHHHHHhccccCCCCEEEEeCCCCch----hhhhcCHHHhccCCCC
Confidence 4555543332222 24678888654322 222234444332 345566655544433 8889999999999998
Q ss_pred HHHHHH
Q 024251 193 VKAVLA 198 (270)
Q Consensus 193 ~~~v~~ 198 (270)
+.++.+
T Consensus 105 ~~~l~~ 110 (119)
T 2j48_A 105 PQLLLT 110 (119)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 887544
No 229
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=43.30 E-value=81 Score=28.92 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=23.7
Q ss_pred EEEEeCchhHHHHHHHhCCcE-----EEEcCcc
Q 024251 53 VWIWTESKQVMTAAVERGWNT-----FVFLSEN 80 (270)
Q Consensus 53 vWiw~~~Ke~vT~ALEsG~d~-----~vv~~~~ 80 (270)
.|....+.+.+..|..+|+|. ++++-||
T Consensus 24 ~~~~~~~~~~~eka~~~gaD~~pv~~vilDLED 56 (339)
T 3r4i_A 24 CDHYAGSEKLMLKSLALQQQLGPVFDITLDCED 56 (339)
T ss_dssp EEEEECSHHHHHHHHHHHHHHCTTEEEEEESST
T ss_pred HHhhCCCHHHHHHHHhCCCCcCCCCcEEEECCC
Confidence 566667899999999999998 9988765
No 230
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=43.21 E-value=34 Score=29.72 Aligned_cols=128 Identities=13% Similarity=0.202 Sum_probs=66.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
.+.+..+.+.|+|.+.|..+. -.... ++ + +.+++.|+++|+-+.-.++. +.+.......|+|++
T Consensus 70 ~~~i~~~~~aGAd~itvh~Ea~~~~~~---~~--i--------~~i~~~G~k~gv~lnp~tp~--~~~~~~l~~~D~Vlv 134 (231)
T 3ctl_A 70 QDYIAQLARAGADFITLHPETINGQAF---RL--I--------DEIRRHDMKVGLILNPETPV--EAMKYYIHKADKITV 134 (231)
T ss_dssp GGTHHHHHHHTCSEEEECGGGCTTTHH---HH--H--------HHHHHTTCEEEEEECTTCCG--GGGTTTGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEECcccCCccHH---HH--H--------HHHHHcCCeEEEEEECCCcH--HHHHHHHhcCCEEEE
Confidence 346899999999999987652 11111 11 0 12234577777766554543 334433446788875
Q ss_pred eCC-----CCeeec--hhhh---hhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe-c-----CC-H-HHHHH
Q 024251 139 DLP-----DWQVIP--AENI---VASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK-V-----ED-V-KAVLA 198 (270)
Q Consensus 139 ~~~-----DWtiIP--lENl---IA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~-~-----~d-~-~~v~~ 198 (270)
-.- +-+.|| ++.| -+..+ +.+..| ..-.-.. .+.+-.+.+.|+|+++.- + +| + ..+++
T Consensus 135 msV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I-~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~~~d~~~~~~~~ 212 (231)
T 3ctl_A 135 MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEI-EVDGSCN-QATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRI 212 (231)
T ss_dssp ESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEE-EEESCCS-TTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHHH
T ss_pred eeeccCcCCccccHHHHHHHHHHHHHHhccCCCceE-EEECCcC-HHHHHHHHHcCCCEEEEccHHHhCCCCcHHHHHHH
Confidence 322 334454 3322 11111 112233 2222211 223344578899999998 3 36 5 45777
Q ss_pred HHHhhc
Q 024251 199 LKEYFD 204 (270)
Q Consensus 199 l~~~~~ 204 (270)
|++.+.
T Consensus 213 l~~~~~ 218 (231)
T 3ctl_A 213 MTAQIL 218 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 231
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=42.61 E-value=27 Score=25.68 Aligned_cols=71 Identities=7% Similarity=0.118 Sum_probs=41.4
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH-HHhh
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL-KEYF 203 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l-~~~~ 203 (270)
...+.++++..-... .--.++..+.. ....|+...... +......+++.|+++.+.+|-++.++.+. ++++
T Consensus 47 ~~~dlvl~D~~lp~~-~g~~~~~~lr~~~~~~~~pii~~t~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l 122 (136)
T 3t6k_A 47 NLPDALICDVLLPGI-DGYTLCKRVRQHPLTKTLPILMLTAQG-DISAKIAGFEAGANDYLAKPFEPQELVYRVKNIL 122 (136)
T ss_dssp SCCSEEEEESCCSSS-CHHHHHHHHHHSGGGTTCCEEEEECTT-CHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCC-CHHHHHHHHHcCCCcCCccEEEEecCC-CHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 346778886543321 11223333322 234455544443 33456788999999999999999876543 3444
No 232
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=42.01 E-value=37 Score=30.84 Aligned_cols=52 Identities=15% Similarity=0.345 Sum_probs=38.6
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
.+.+.|.+.+.. |...++..+.+.+..++..+.++++|+. +.+.|+|+|++.
T Consensus 121 ~g~~~V~~~~g~----~~~~~i~~~~~~g~~v~~~v~t~~~a~~---a~~~GaD~i~v~ 172 (369)
T 3bw2_A 121 DPVPVVSFHFGV----PDREVIARLRRAGTLTLVTATTPEEARA---VEAAGADAVIAQ 172 (369)
T ss_dssp SCCSEEEEESSC----CCHHHHHHHHHTTCEEEEEESSHHHHHH---HHHTTCSEEEEE
T ss_pred cCCCEEEEeCCC----CcHHHHHHHHHCCCeEEEECCCHHHHHH---HHHcCCCEEEEe
Confidence 357788887654 3345666666567789999999998874 457899999993
No 233
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=41.90 E-value=17 Score=32.22 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=34.3
Q ss_pred CeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 143 WQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 143 WtiIPlENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
|..+. +.+|+.++..+-+|++ .|+++++++.+ ++.|+|||+ +|+|+.+++
T Consensus 253 ~~~~~-~~~v~~~~~~Gl~V~~WTVn~~~~~~~l---~~~GVDgIi--TD~P~~~~~ 303 (313)
T 3l12_A 253 FLDVT-PELVAEAHDLGLIVLTWTVNEPEDIRRM---ATTGVDGIV--TDYPGRTQR 303 (313)
T ss_dssp GGGCC-HHHHHHHHHTTCEEEEBCCCSHHHHHHH---HHHTCSEEE--ESCHHHHHH
T ss_pred hhcCC-HHHHHHHHHCCCEEEEEcCCCHHHHHHH---HHcCCCEEE--eCCHHHHHH
Confidence 33443 4667777766666655 46777777665 578999998 788986554
No 234
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=41.78 E-value=25 Score=25.27 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=38.4
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-... .--.++..+.. ....++......+ ......+++.|++|.+.+|-++.++...
T Consensus 47 ~~dlvl~D~~l~~~-~g~~~~~~l~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (136)
T 1mvo_A 47 KPDLIVLDVMLPKL-DGIEVCKQLRQQKLMFPILMLTAKDE-EFDKVLGLELGADDYMTKPFSPREVNAR 114 (136)
T ss_dssp CCSEEEEESSCSSS-CHHHHHHHHHHTTCCCCEEEEECTTC-CCCHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCCC-CHHHHHHHHHcCCCCCCEEEEECCCC-HHHHHHHHhCCCCEEEECCCCHHHHHHH
Confidence 45777776543321 21223333322 2345555544332 2344567899999999999999876543
No 235
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=41.77 E-value=26 Score=24.67 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=37.3
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-... .--.++..+.. ....++..... .+......+++.|++|.+.+|-++.++.+.
T Consensus 45 ~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (124)
T 1mb3_A 45 KPDLILMDIQLPEI-SGLEVTKWLKEDDDLAHIPVVAVTAF-AMKGDEERIREGGCEAYISKPISVVHFLET 114 (124)
T ss_dssp CCSEEEEESBCSSS-BHHHHHHHHHHSTTTTTSCEEEEC-------CHHHHHHHTCSEEECSSCCHHHHHHH
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHcCccccCCcEEEEECC-CCHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 46778885543221 12233443332 23456655443 344556678899999999999999876543
No 236
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=40.98 E-value=1.8e+02 Score=25.22 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=63.1
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEEc----Cc-----------chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEe
Q 024251 53 VWIWTESKQVMTAAVERGWNTFVFL----SE-----------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV 117 (270)
Q Consensus 53 vWiw~~~Ke~vT~ALEsG~d~~vv~----~~-----------~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V 117 (270)
+..+-...+++..+.+.|++.+.+. .+ +.+..+++.+ .-+.++-....+
T Consensus 24 ~i~~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~----------------~~~~Pvi~~~~~ 87 (297)
T 2zbt_A 24 VIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMA----------------AVSIPVMAKVRI 87 (297)
T ss_dssp EEEEESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHT----------------TCSSCEEEEEET
T ss_pred eeeeechHHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHH----------------hcCCCeEEEecc
Confidence 4456667899999999999998652 11 1111222111 112333222334
Q ss_pred cChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 118 STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
.+.++.+.+.. ..++.+...+ + .+++.++..+... ..-+.+.+.+++|++. +.+.|+|-|.++
T Consensus 88 ~~~~~~~~~~~--aGad~v~~~~-~---~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~---a~~~Gad~I~v~ 152 (297)
T 2zbt_A 88 GHFVEAMILEA--IGVDFIDESE-V---LTPADEEHHIDKWKFKVPFVCGARNLGEALR---RIAEGAAMIRTK 152 (297)
T ss_dssp TCHHHHHHHHH--TTCSEEEEET-T---SCCSCSSCCCCGGGCSSCEEEEESSHHHHHH---HHHTTCSEEEEC
T ss_pred CCHHHHHHHHH--CCCCEEeeeC-C---CChHHHHHHHHHhCCCceEEeecCCHHHHHH---HHHcCCCEEEEc
Confidence 44555454443 4567773322 1 2334555554332 4456777899999765 478999998765
No 237
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=40.60 E-value=1.5e+02 Score=27.03 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=50.4
Q ss_pred CCCceEEEeCCCC----------eeechhhhhhcc-------cCCCceEEEEcCCH-----HHH-HHHHHHHhcccCeEE
Q 024251 131 GQAENIVIDLPDW----------QVIPAENIVASF-------QGSGKTVFAISKTP-----SEA-QIFLEALEQGLGGIV 187 (270)
Q Consensus 131 ~~~~~vvv~~~DW----------tiIPlENlIA~~-------q~~~~~i~a~v~~~-----~eA-~~~l~~LE~G~DGVv 187 (270)
..+.-|-|+...| +++|.|..++.+ .+.+.-|+|..... +|| +-+.--.|.|+|+|.
T Consensus 110 aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if 189 (298)
T 3eoo_A 110 AGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIF 189 (298)
T ss_dssp TTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred hCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEE
Confidence 3466788888776 489999666544 23456788887765 222 334445678999999
Q ss_pred Ee-cCCHHHHHHHHHhh
Q 024251 188 LK-VEDVKAVLALKEYF 203 (270)
Q Consensus 188 l~-~~d~~~v~~l~~~~ 203 (270)
+. +.|+++++++.+.+
T Consensus 190 ~~~~~~~ee~~~~~~~~ 206 (298)
T 3eoo_A 190 PEAMKTLDDYRRFKEAV 206 (298)
T ss_dssp ECCCCSHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 97 44899998887766
No 238
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=40.43 E-value=26 Score=27.47 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=39.1
Q ss_pred CCceEEEeCCCCe--eechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 132 QAENIVIDLPDWQ--VIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 132 ~~~~vvv~~~DWt--iIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
..+.++++..-+. -+ +...+.... ....++......+ ......+++.|++|.+.+|-++.++..
T Consensus 52 ~~dlvl~D~~mp~~~g~-l~~~~~~~~-~~~~ii~lt~~~~-~~~~~~a~~~ga~~~l~KP~~~~~L~~ 117 (196)
T 1qo0_D 52 PVDVVFTSIFQNRHHDE-IAALLAAGT-PRTTLVALVEYES-PAVLSQIIELECHGVITQPLDAHRVLP 117 (196)
T ss_dssp CCSEEEEECCSSTHHHH-HHHHHHHSC-TTCEEEEEECCCS-HHHHHHHHHHTCSEEEESSCCGGGHHH
T ss_pred CCCEEEEeCCCCccchH-HHHHHhccC-CCCCEEEEEcCCC-hHHHHHHHHcCCCeeEecCcCHHHHHH
Confidence 4677888554322 12 333343321 3456665554433 346778899999999999999876543
No 239
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=40.17 E-value=69 Score=27.15 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=56.4
Q ss_pred HHHHHHhCCcEEEEcCcc----hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 63 MTAAVERGWNTFVFLSEN----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 63 vT~ALEsG~d~~vv~~~~----~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
+..+.+.|+|++++.... .+..+++-+. ....|.. ..+.|.+.++++++... ..+++-+
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~-------------a~~~Gl~--~iv~v~~~~e~~~~~~~--~~~~i~~ 137 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINK-------------CKNLGLE--TIVCTNNINTSKAVAAL--SPDCIAV 137 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHH-------------HHHHTCE--EEEEESSSHHHHHHTTT--CCSEEEE
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHH-------------HHHCCCe--EEEEeCCchHHHHHHhC--CCCEEEE
Confidence 688999999999995410 1111111111 0111332 44456665554544332 2344545
Q ss_pred eCCCC--------ee-ec--hhhhhhcccC--CCceEEE--EcCCHHHHHHHHHHHhcccCeEEEe-----cCCHHH
Q 024251 139 DLPDW--------QV-IP--AENIVASFQG--SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLK-----VEDVKA 195 (270)
Q Consensus 139 ~~~DW--------ti-IP--lENlIA~~q~--~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~-----~~d~~~ 195 (270)
+. -| +. .| ++..++.+.. .+..|++ .++++++++.+ .+.|+||+++- ++|+.+
T Consensus 138 ~~-~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~---~~~gaDgvlVGsAi~~~~d~~~ 210 (219)
T 2h6r_A 138 EP-PELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAA---LDLGAEGVLLASGVVKAKNVEE 210 (219)
T ss_dssp CC-CC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHH---HTTTCCCEEESHHHHTCSSHHH
T ss_pred Ee-ccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHH---hhCCCCEEEEcHHHhCcccHHH
Confidence 43 34 11 12 3444433322 1334544 35677777764 67899999974 566653
No 240
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=39.91 E-value=2.1e+02 Score=25.82 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=65.9
Q ss_pred chhHHHHHHHhCCcEEEEcCc--chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceE
Q 024251 59 SKQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (270)
Q Consensus 59 ~Ke~vT~ALEsG~d~~vv~~~--~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v 136 (270)
+.-.|-.|-..|+|+|+.--. +.+..+++-.++. .-|.. +.++|-+.++++.+... ..+.+
T Consensus 115 d~yQI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~-------------~lGl~--~LvEVh~~~El~rAl~~--~a~iI 177 (258)
T 4a29_A 115 KESQIDDAYNLGADTVLLIVKILTERELESLLEYAR-------------SYGME--PLILINDENDLDIALRI--GARFI 177 (258)
T ss_dssp SHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHH-------------HTTCC--CEEEESSHHHHHHHHHT--TCSEE
T ss_pred cHHHHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHH-------------HHhHH--HHHhcchHHHHHHHhcC--CCcEE
Confidence 455677888899999865321 1112222222211 12332 57799999999887654 45677
Q ss_pred EEeCCCCee--ech---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 137 VIDLPDWQV--IPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 137 vv~~~DWti--IPl---ENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
=|+-+|-+. +-+ ++|...+. .+.-+++ .+++++|++.+ .+.|+||+|+-.
T Consensus 178 GINNRnL~tf~vdl~~t~~L~~~ip-~~~~~VsESGI~t~~dv~~l---~~~G~~a~LVGe 234 (258)
T 4a29_A 178 GIMSRDFETGEINKENQRKLISMIP-SNVVKVAKLGISERNEIEEL---RKLGVNAFLISS 234 (258)
T ss_dssp EECSBCTTTCCBCHHHHHHHHTTSC-TTSEEEEEESSCCHHHHHHH---HHTTCCEEEECH
T ss_pred EEeCCCccccccCHHHHHHHHhhCC-CCCEEEEcCCCCCHHHHHHH---HHCCCCEEEECH
Confidence 777776542 222 33444432 2334455 46788888765 478999999853
No 241
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=39.58 E-value=97 Score=27.88 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=12.1
Q ss_pred hHHHHHHHhCCcEEE
Q 024251 61 QVMTAAVERGWNTFV 75 (270)
Q Consensus 61 e~vT~ALEsG~d~~v 75 (270)
..+..|++.|+|++=
T Consensus 112 ~~ve~a~~~GAdaV~ 126 (304)
T 1to3_A 112 INAQAVKRDGAKALK 126 (304)
T ss_dssp CCHHHHHHTTCCEEE
T ss_pred hhHHHHHHcCCCEEE
Confidence 347889999999864
No 242
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=39.51 E-value=29 Score=30.62 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=66.2
Q ss_pred eeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhccc-------------------CeEEEecC-CHHHHHHHHHhh
Q 024251 144 QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGL-------------------GGIVLKVE-DVKAVLALKEYF 203 (270)
Q Consensus 144 tiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~-------------------DGVvl~~~-d~~~v~~l~~~~ 203 (270)
+.--+=|+++. +..+-|+..--+-+|.+..-.+|...+ .|.+++|+ +.++++++.+++
T Consensus 95 ~~~alGnli~~--Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L 172 (222)
T 4adx_I 95 RFTAVGNLVLA--NDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTL 172 (222)
T ss_pred CcceeEEEEEE--cCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHHHHHHHh
Confidence 44445677775 666666666666777777777654433 36788888 567888899988
Q ss_pred ccccccccceeeeEEEEE-EEEeccccceeEEeccceeEEeecccc
Q 024251 204 DGRNEVSNLLSLMKATVT-RVDVAGMGDRVCVDLCRLFLVHSECLE 248 (270)
Q Consensus 204 ~~~~~~~~~l~L~~a~Vt-~V~~vGmGdRVCVDtcSmFLVhsEt~e 248 (270)
++++...||- .+.-||+|--|- -.-.|||.+|.+
T Consensus 173 --------~V~v~~GTvn~G~~~VGsg~VaN---~~G~lvg~~TT~ 207 (222)
T 4adx_I 173 --------GVEADVGTVNHGVTLIGACSVAN---SNGVLVGEETTG 207 (222)
T ss_pred --------CCCEEEeeecCCCCceeEEEEEe---CCEEEECCCCCH
Confidence 5889999996 999999985442 227789999864
No 243
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=39.23 E-value=44 Score=27.28 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=60.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEEe
Q 024251 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~ 139 (270)
..+.....+.|.+-++++.+ .+.++++.+-. |.. .++...++++.++++. ..+++.+|+-
T Consensus 13 ~~la~~L~~~g~~v~vid~~-~~~~~~l~~~~----------------~~~-~i~gd~~~~~~l~~a~--i~~ad~vi~~ 72 (218)
T 3l4b_C 13 YYLARSMLSRKYGVVIINKD-RELCEEFAKKL----------------KAT-IIHGDGSHKEILRDAE--VSKNDVVVIL 72 (218)
T ss_dssp HHHHHHHHHTTCCEEEEESC-HHHHHHHHHHS----------------SSE-EEESCTTSHHHHHHHT--CCTTCEEEEC
T ss_pred HHHHHHHHhCCCeEEEEECC-HHHHHHHHHHc----------------CCe-EEEcCCCCHHHHHhcC--cccCCEEEEe
Confidence 44556666789987777654 45555443210 000 1111224445444432 3467888886
Q ss_pred CCCCeeechhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC
Q 024251 140 LPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 140 ~~DWtiIPlENlIA~~----q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
..+- .+|+++.. .....++++.+++.+.++.+ .+.|+|-|+....
T Consensus 73 ~~~d----~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l---~~~G~d~vi~p~~ 121 (218)
T 3l4b_C 73 TPRD----EVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIF---KKMGITTVLNLTT 121 (218)
T ss_dssp CSCH----HHHHHHHHHHHHTSCCCEEEECCCSGGGHHHH---HHHTCEECCCHHH
T ss_pred cCCc----HHHHHHHHHHHHHcCCCeEEEEEeCcchHHHH---HHCCCCEEECHHH
Confidence 5553 34443322 13456899999999998876 4569987765443
No 244
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=39.06 E-value=29 Score=32.53 Aligned_cols=109 Identities=13% Similarity=0.054 Sum_probs=58.9
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecC-hhhhhhhcccc-CCCc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPAD-GQAE 134 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~-~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~-~ed~e~~~~~~-~~~~ 134 (270)
-+.++..++-+.|.-++|-.... .+.+++..+..+ .+++. +.. ....+.+.... ...+
T Consensus 54 te~~lA~A~a~~Gg~gvi~~~~s~ee~~~~i~~~~~-----------------~~~~~--~g~~~~~~e~~~~a~~aGvd 114 (361)
T 3r2g_A 54 TESNMANFMHSKGAMGALHRFMTIEENIQEFKKCKG-----------------PVFVS--VGCTENELQRAEALRDAGAD 114 (361)
T ss_dssp CSHHHHHHHHHTTCEEBCCSCSCHHHHHHHHHTCCS-----------------CCBEE--ECSSHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhcce-----------------EEEEE--cCCCHHHHHHHHHHHHcCCC
Confidence 45788888888887666643211 233333333321 11221 222 23333332222 3578
Q ss_pred eEEEeCC-CCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 135 NIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 135 ~vvv~~~-DWtiIPlENlIA~~q~~--~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
.+.++.. +.. -.+.++|+.+... +..|++ .+.++++|+.+ .+.|+|+|.+.
T Consensus 115 vI~id~a~G~~-~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a---~~aGaD~I~Vg 169 (361)
T 3r2g_A 115 FFCVDVAHAHA-KYVGKTLKSLRQLLGSRCIMAGNVATYAGADYL---ASCGADIIKAG 169 (361)
T ss_dssp EEEEECSCCSS-HHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHH---HHTTCSEEEEC
T ss_pred EEEEeCCCCCc-HhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHH---HHcCCCEEEEc
Confidence 8888654 221 1122345444432 457888 69999998765 47799999983
No 245
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=38.81 E-value=70 Score=25.37 Aligned_cols=39 Identities=23% Similarity=0.090 Sum_probs=30.1
Q ss_pred eEEEEEEEEeccccceeEEeccc-----------------eeEEeeccccCCCCCC
Q 024251 216 MKATVTRVDVAGMGDRVCVDLCR-----------------LFLVHSECLESNYIAS 254 (270)
Q Consensus 216 ~~a~Vt~V~~vGmGdRVCVDtcS-----------------mFLVhsEt~e~pYva~ 254 (270)
..+....|-.+--||+|+|-.-. =||++++..++||.+-
T Consensus 88 ~~~s~s~il~L~~GD~V~v~~~~~~~~~~~~~~~~~s~FsGfLl~~D~~~~~~~~~ 143 (148)
T 4f3j_A 88 ASLSGGAMVRLEPEDQVWVQVGVGDYIGIYASIKTDSTFSGFLVYSDWHSSPVFAH 143 (148)
T ss_dssp EEEEEEEEEEECTTCEEEEECCSTTCEEEECBTTBCCEEEEEEEEESCCSSTTTCC
T ss_pred ceEeeEEEEEcCCCCEEEEEEEcCCCceEEcCCCCCeEEEEEEEeecCCCCceEEe
Confidence 34556677888899999996422 5899999999998764
No 246
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=38.59 E-value=66 Score=30.77 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=40.8
Q ss_pred hhhhhhcccc-CCCceEEEeCCCCeeechhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHHhcccCeEEE
Q 024251 121 QELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 121 ed~e~~~~~~-~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a~-v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
++++.+.... ...+.++++...-.--.+.++|..+... +..|++. +.+.++|+.+ .+.|+|+|.+
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l---~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKAL---AEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHH---HHTTCSEEEE
T ss_pred chHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHH---HHcCCCEEEE
Confidence 4444433332 3588999987754434444555555432 3355554 8899888664 5689999998
No 247
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=38.23 E-value=1.8e+02 Score=24.61 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=50.6
Q ss_pred CCeEEEEEEecChhhhhhhccccCCCceEEEeCC-----------CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHH
Q 024251 108 DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP-----------DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFL 176 (270)
Q Consensus 108 gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~-----------DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l 176 (270)
+.++---+.+.+.++++.+.... +++++++.. ||++++ ++. +...-=++|.==+++-.+.++
T Consensus 97 ~~~vika~~v~~~~~l~~~~~~~--~d~~LlD~~~~~~GGtG~~fdw~~l~--~~~---~~~~p~~LAGGL~peNV~~ai 169 (205)
T 1nsj_A 97 RILVIKAVGVSNERDMERALNYR--EFPILLDTKTPEYGGSGKTFDWSLIL--PYR---DRFRYLVLSGGLNPENVRSAI 169 (205)
T ss_dssp TSEEEEEEEESSHHHHHHHGGGT--TSCEEEEESCSSSSSCCSCCCGGGTG--GGG---GGSSCEEEESSCCTTTHHHHH
T ss_pred CCCEEEEEEcCCHHHHHHHHHcC--CCEEEECCCCCCCCCCCCccCHHHHH--hhh---cCCCcEEEECCCCHHHHHHHH
Confidence 34555556788888876654432 899999863 898765 221 112224666555666555554
Q ss_pred HHHhcccCeEEEec--------CCHHHHHHHHHh
Q 024251 177 EALEQGLGGIVLKV--------EDVKAVLALKEY 202 (270)
Q Consensus 177 ~~LE~G~DGVvl~~--------~d~~~v~~l~~~ 202 (270)
..+ +++||=+.+ .|++.|+++.+.
T Consensus 170 ~~~--~p~gVDvsSGvE~~pG~KD~~ki~~fi~~ 201 (205)
T 1nsj_A 170 DVV--RPFAVDVSSGVEAFPGKKDHDSIKMFIKN 201 (205)
T ss_dssp HHH--CCSEEEESGGGEEETTEECHHHHHHHHHH
T ss_pred Hhc--CCCEEEECCceecCCCCcCHHHHHHHHHH
Confidence 433 788887653 266655554443
No 248
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=38.23 E-value=46 Score=26.79 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=39.7
Q ss_pred CCCceEEEeCCCCeeechhhhhhcc---cCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASF---QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~---q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
...+.++++..-+..=-+| ++..+ ......|+......+ ......+++.|++|.+.+|-++.++.+.
T Consensus 53 ~~~dlvllD~~mp~~~G~~-~~~~lr~~~~~~~~ii~lt~~~~-~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~ 122 (225)
T 3klo_A 53 RSIQMLVIDYSRISDDVLT-DYSSFKHISCPDAKEVIINCPQD-IEHKLLFKWNNLAGVFYIDDDMDTLIKG 122 (225)
T ss_dssp GGCCEEEEEGGGCCHHHHH-HHHHHHHHHCTTCEEEEEEECTT-CCHHHHTTSTTEEEEEETTCCHHHHHHH
T ss_pred cCCCEEEEeCCCCCCCHHH-HHHHHHHhhCCCCcEEEEECCcc-hhHHHHHHHhCCCEEEecCCCHHHHHHH
Confidence 3468888865433221122 22222 134556555444332 2255678899999999999999876543
No 249
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=37.08 E-value=51 Score=30.49 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=33.2
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccC-CCceEEE-EcCCHHHHHHHHHHHhcccCeEEE
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~-~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
..++.++|+...=.--.+.+.|.++.. .+..|++ .+.++++|+.+ .+.|+|+|.+
T Consensus 116 aGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l---~~aGaD~I~V 172 (361)
T 3khj_A 116 AGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKEL---IENGADGIKV 172 (361)
T ss_dssp TTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHH---HHTTCSEEEE
T ss_pred cCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHH---HHcCcCEEEE
Confidence 357888886542111112223332221 1456775 89999998765 4789999998
No 250
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=36.89 E-value=26 Score=30.58 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=31.0
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 149 ENlIA~~q~~~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
+.+|+.++..+-+|++ .+++.++++.+ ++.|+|||+ |++|+.+.+
T Consensus 231 ~~~v~~~~~~G~~v~~wTvn~~~~~~~l---~~~GVdgIi--TD~P~~~~~ 276 (287)
T 2oog_A 231 EQNTHHLKDLGFIVHPYTVNEKADMLRL---NKYGVDGVF--TNFADKYKE 276 (287)
T ss_dssp HHHHHHHHHTTCEECCBCCCSHHHHHHH---HHHTCSEEE--ESCHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHH---HHcCCCEEE--eCCHHHHHH
Confidence 4566777766656554 36777776654 678999997 788885543
No 251
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=36.85 E-value=49 Score=31.92 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=38.8
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccCC--CceEE-EEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVF-AISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~-a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
...+.++++..+..-..+.++|.++... +..|+ ..+.+.++|+.+. +.|+|+|++
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~---~aGad~i~v 324 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALI---EAGANVVKV 324 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHH---HHTCSEEEE
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHH---HhCCCEEEE
Confidence 4689999988766555566666665433 23444 4889999887765 569999997
No 252
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=36.77 E-value=86 Score=27.90 Aligned_cols=119 Identities=13% Similarity=0.028 Sum_probs=64.1
Q ss_pred cEEEEEeCchhHHHHHHHhCCc--EEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhcc
Q 024251 51 KRVWIWTESKQVMTAAVERGWN--TFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQP 128 (270)
Q Consensus 51 K~vWiw~~~Ke~vT~ALEsG~d--~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~ 128 (270)
|+-.++-+-+..+..||++|.. .+++.++..+. .++-. .+...|.+ +..-+++.++.+..
T Consensus 31 ~~g~flveG~~~V~eaL~~~~~i~~l~~~~~~~~~-~~l~~-------------~~~~~~~~----v~~v~~~~l~~ls~ 92 (277)
T 3nk6_A 31 SIKTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLD-PALLD-------------LCRQREIP----VRLIDVSIVNQLFK 92 (277)
T ss_dssp --CEEEEESHHHHHHHHHTTCCEEEEEEETTSCCC-HHHHH-------------HHHHTTCC----EEEECHHHHTTCC-
T ss_pred hcCCEEEEeHHHHHHHHhCCCCeEEEEEeCCccCc-HHHHH-------------HHHhcCCc----EEEECHHHHHHhhC
Confidence 3333444459999999999953 55555431111 00000 00111221 23457777777765
Q ss_pred ccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHH-hcccCeEEEec
Q 024251 129 ADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVLKV 190 (270)
Q Consensus 129 ~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~L-E~G~DGVvl~~ 190 (270)
.. .+.-++....-....+++.+++. ++ ..=++-.+.|+.-.-..+.+. --|+|||++.+
T Consensus 93 ~~-~~qGv~a~~~~~~~~~l~~~~~~-~~-~~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~ 152 (277)
T 3nk6_A 93 AE-RKAKVFGIARVPRPARLADIAER-GG-DVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVD 152 (277)
T ss_dssp -----CCEEEEEECCCCCCHHHHHHH-CS-CEEEEESCCCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CC-CCCeEEEEEecCCCCCHHHHhcc-CC-CEEEEEcCCCcchHHHHHHHHHHcCCCEEEEcC
Confidence 42 33444443443333478888764 22 245666788887776666544 47999999988
No 253
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=36.76 E-value=12 Score=32.05 Aligned_cols=80 Identities=11% Similarity=0.012 Sum_probs=41.3
Q ss_pred EEEecChhhhhhhcccc--CCCceEEEeCCCCeeec-hhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEec
Q 024251 114 IIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIP-AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 114 ~v~V~~~ed~e~~~~~~--~~~~~vvv~~~DWtiIP-lENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
.+...+.++....+... +..+.+-+..++..-.- ++.+-.++. .-..-...+-+.++++.++ +.|+|||++..
T Consensus 21 v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~-~~~vgagtvi~~d~~~~A~---~aGAd~v~~p~ 96 (214)
T 1wbh_A 21 VIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVP-EAIVGAGTVLNPQQLAEVT---EAGAQFAISPG 96 (214)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCT-TSEEEEESCCSHHHHHHHH---HHTCSCEEESS
T ss_pred EEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCc-CCEEeeCEEEEHHHHHHHH---HcCCCEEEcCC
Confidence 33445565544433322 44666666655432211 122223332 1122223456667777765 56999999887
Q ss_pred CCHHHHH
Q 024251 191 EDVKAVL 197 (270)
Q Consensus 191 ~d~~~v~ 197 (270)
.|+.-++
T Consensus 97 ~d~~v~~ 103 (214)
T 1wbh_A 97 LTEPLLK 103 (214)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 7776443
No 254
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=36.59 E-value=35 Score=33.48 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 024251 169 PSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (270)
Q Consensus 169 ~~eA~~~l~~LE~G~DGVvl~-~~d~~~v~~l~~~~~~ 205 (270)
..|..-...+|+.|+|||+++ .++++++++++++++.
T Consensus 193 ~~D~~DI~~~l~~g~d~I~lpfV~saeDv~~~~~~l~~ 230 (500)
T 1a3w_A 193 EKDKEDLRFGVKNGVHMVFASFIRTANDVLTIREVLGE 230 (500)
T ss_dssp HHHHHHHHHHHHHTCSEEEECSCCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 366777788999999999998 5789999999998854
No 255
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=35.91 E-value=66 Score=26.24 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=19.4
Q ss_pred HHHHHHHhcccCeEEEecCCHHHHH-HHH
Q 024251 173 QIFLEALEQGLGGIVLKVEDVKAVL-ALK 200 (270)
Q Consensus 173 ~~~l~~LE~G~DGVvl~~~d~~~v~-~l~ 200 (270)
+..-..+++++|||++.+.+...+. .++
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~~~~~~~~l~ 83 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFNENIIENTLT 83 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCChHHHHHHHH
Confidence 3444456899999999997666555 444
No 256
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=35.89 E-value=75 Score=31.54 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=64.3
Q ss_pred CCCCeEEEEEEecChhhhhhhccccCCCceE--------EEeCCCCeeechhh-----hhhcccC-CCceEEEEcCCH--
Q 024251 106 SGDRRVGSIIEVSTPQELQQLQPADGQAENI--------VIDLPDWQVIPAEN-----IVASFQG-SGKTVFAISKTP-- 169 (270)
Q Consensus 106 ~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v--------vv~~~DWtiIPlEN-----lIA~~q~-~~~~i~a~v~~~-- 169 (270)
.+|.+++.+..+.++++.+.+... .+|.| +++. .-+|-|. ....++. .+..++..+.|+
T Consensus 266 ~DG~~i~l~an~~~p~~~~~a~~~--GadgVGL~RtE~l~ld~---e~~P~~~~q~~~~~~~~~~~~g~pv~VR~lD~g~ 340 (572)
T 2wqd_A 266 VDGVHAELAANIGTPNDLPGVIEN--GAQGIGLYRTEFLYMGR---DQMPTEEEQFEAYKEVLEAMGGKRVVVRTLDIGG 340 (572)
T ss_dssp TTSCBCEEEEEESSGGGHHHHHHT--TCSCEEEEECHHHHSSS---SSCCCHHHHHHHHHHHHHHTTTCCEEEECCCCCT
T ss_pred cCCCeeeeeeccCCHHHHHHHHhC--CCCeEEEeeccccccCc---ccCCCHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 468899999999999998877654 34544 4433 3366653 2211111 233577777653
Q ss_pred ---------------------------------HHHHHHHHHHhcccCeEEEe-cCCHHHHHHHHHhhccc
Q 024251 170 ---------------------------------SEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDGR 206 (270)
Q Consensus 170 ---------------------------------~eA~~~l~~LE~G~DGVvl~-~~d~~~v~~l~~~~~~~ 206 (270)
.+.+.++.++..|..+|+++ .++++|+++++++++..
T Consensus 341 Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~QlrAi~rA~~~G~~~Im~PmV~s~~E~~~a~~~v~~~ 411 (572)
T 2wqd_A 341 DKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLRALLRASVYGKLNIMFPMVATINEFREAKAILLEE 411 (572)
T ss_dssp TSCCTTSCCCCCSCGGGSSCHHHHHTTCHHHHHHHHHHHHHHTTTSCEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred ccchhhccCcccCCchhhhhhhhhcccChHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 23477889999999999984 24789988888877543
No 257
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=35.53 E-value=19 Score=29.28 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=45.8
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.++++..-... .--.++..+. .....|+...... +......+++.|++|.+.+|-++
T Consensus 32 ~~~~~~~al~~l~~-~~~dlvllD~~lp~~-~g~~~~~~lr~~~~~~~ii~lt~~~-~~~~~~~~~~~Ga~~~l~Kp~~~ 108 (225)
T 3c3w_A 32 EAGSVAEAMARVPA-ARPDVAVLDVRLPDG-NGIELCRDLLSRMPDLRCLILTSYT-SDEAMLDAILAGASGYVVKDIKG 108 (225)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSEETTE-EHHHHHHHHHHHCTTCEEEEGGGSS-SHHHHHHHHHHTCCCHHHHHHHH
T ss_pred EECCHHHHHHHHhh-cCCCEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEECCC-CHHHHHHHHHCCCCEEEECCCCH
Confidence 34565543332222 346888884432211 1112333322 2345666655443 44567788999999999999888
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
.++.+.
T Consensus 109 ~~L~~~ 114 (225)
T 3c3w_A 109 MELARA 114 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 258
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=35.44 E-value=1.4e+02 Score=25.91 Aligned_cols=124 Identities=12% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCCcEEEEEeCchhHHHHHHHhCC---cEEEEcCcchhh-hhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhh
Q 024251 48 SKPKRVWIWTESKQVMTAAVERGW---NTFVFLSENQQL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQEL 123 (270)
Q Consensus 48 ~~~K~vWiw~~~Ke~vT~ALEsG~---d~~vv~~~~~e~-a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~ 123 (270)
++...+||+- +..+..||++|. ..+++.++..+. .+++-+. .+..|. .+..-+++.+
T Consensus 8 ~~~~~~~veG--~~~V~eal~~~~~~i~~l~~~~~~~~~~~~~l~~~-------------~~~~~i----~v~~v~~~~l 68 (253)
T 1gz0_A 8 GSHMSEMIYG--IHAVQALLERAPERFQEVFILKGREDKRLLPLIHA-------------LESQGV----VIQLANRQYL 68 (253)
T ss_dssp ----CEEEES--HHHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHH-------------HHHHTC----EEEEECSHHH
T ss_pred CCCCcEEEEE--HHHHHHHHhcCCCCeEEEEEECCccchhHHHHHHH-------------HHHCCC----cEEEeCHHHH
Confidence 3444566665 999999999984 456666531110 1111100 001121 2234566777
Q ss_pred hhhccccCCCceEEEeCCCCeee---chhhhhhcccCCCceEEEEcCCHHHHHHHHHH-HhcccCeEEEecC
Q 024251 124 QQLQPADGQAENIVIDLPDWQVI---PAENIVASFQGSGKTVFAISKTPSEAQIFLEA-LEQGLGGIVLKVE 191 (270)
Q Consensus 124 e~~~~~~~~~~~vvv~~~DWtiI---PlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~-LE~G~DGVvl~~~ 191 (270)
+.+.... .+.-++....-.+.. +++.++...+..-.=++-.+.|+.-.-..+.+ ---|++||++..+
T Consensus 69 ~~ls~~~-~~qGv~a~~~~~~~~~~~~l~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~ 139 (253)
T 1gz0_A 69 DEKSDGA-VHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKD 139 (253)
T ss_dssp HHTTTSC-CCTTEEEEECCCCCCCGGGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred HHHhCCC-CCcEEEEEEeccccCcHHHHHHHHhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCC
Confidence 7776543 234444444433322 34444432111112234455666555444443 3469999999765
No 259
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=34.91 E-value=37 Score=33.88 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 024251 169 PSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (270)
Q Consensus 169 ~~eA~~~l~~LE~G~DGVvl~-~~d~~~v~~l~~~~~~ 205 (270)
..|......+|+.|+|+|.++ .++++++++++++++.
T Consensus 173 ekD~~di~~~l~~g~d~v~~sfV~~a~dv~~~~~~l~~ 210 (587)
T 2e28_A 173 EKDRADILFGIRQGIDFIAASFVRRASDVLEIRELLEA 210 (587)
T ss_dssp HHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 467777889999999999998 6889999999999854
No 260
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=34.36 E-value=50 Score=28.10 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=26.8
Q ss_pred CCCcEEEEEeC-----chhHHHHHHHhCCcEEEEcC
Q 024251 48 SKPKRVWIWTE-----SKQVMTAAVERGWNTFVFLS 78 (270)
Q Consensus 48 ~~~K~vWiw~~-----~Ke~vT~ALEsG~d~~vv~~ 78 (270)
.+.+.+|+|+- +++.+...++.|+|+|+.+.
T Consensus 210 ~~G~~v~~wTv~~~~n~~~~~~~l~~~GvdgI~TD~ 245 (258)
T 2o55_A 210 EKGLSVTVWMPWIFDDSEEDWKKCLELQVDLICSNY 245 (258)
T ss_dssp HTTCEEEEECCTTCCCCHHHHHHHHHHTCSEEEESC
T ss_pred HCCCEEEEeeCCCCCCCHHHHHHHHHcCCCEEEeCC
Confidence 56678999996 68899999999999999865
No 261
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=34.06 E-value=44 Score=24.49 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=34.6
Q ss_pred CCceEEEeCCCCeeechhhhhhccc-CCCceEEEEcC-CHHHHHHHHHHHhcccCeEEEecCCHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ-GSGKTVFAISK-TPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q-~~~~~i~a~v~-~~~eA~~~l~~LE~G~DGVvl~~~d~~~v 196 (270)
..+.++++..-.. ..--.++..+. .....++.... ...+.....++++.|++|.+.+|-++.++
T Consensus 60 ~~dlvilD~~l~~-~~g~~~~~~lr~~~~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 60 NVDLILLDIEMPV-MDGMEFLRHAKLKTRAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp TCCEEEECTTSCC-CTTCHHHHHHHHHCCCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 4677777544222 11112222222 11245555544 23344556788999999999999986643
No 262
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=33.63 E-value=24 Score=29.89 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=35.1
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccCCC-ceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~~~-~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
+..+.+-+..++.. ....+..+...+ +.-+..+-+.++++.+ ++.|+|||++.-.|..-++..++
T Consensus 37 gGv~~iel~~k~~~---~~~~i~~~~~~~~~~gag~vl~~d~~~~A---~~~GAd~v~~~~~d~~v~~~~~~ 102 (207)
T 2yw3_A 37 EGVGALEITLRTEK---GLEALKALRKSGLLLGAGTVRSPKEAEAA---LEAGAAFLVSPGLLEEVAALAQA 102 (207)
T ss_dssp TTCCEEEEECSSTH---HHHHHHHHTTSSCEEEEESCCSHHHHHHH---HHHTCSEEEESSCCHHHHHHHHH
T ss_pred cCCCEEEEeCCChH---HHHHHHHHhCCCCEEEeCeEeeHHHHHHH---HHcCCCEEEcCCCCHHHHHHHHH
Confidence 34666666555443 234444444311 1122233455777766 45699999988777654444333
No 263
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=33.40 E-value=1.9e+02 Score=23.80 Aligned_cols=109 Identities=10% Similarity=0.115 Sum_probs=60.1
Q ss_pred CchhHHHHHHHhCCcEEEEcC-------c---chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhh-hhhh
Q 024251 58 ESKQVMTAAVERGWNTFVFLS-------E---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE-LQQL 126 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~-------~---~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed-~e~~ 126 (270)
.-.+.+..+.+.|++.+=+.- . ..+.++++.+.. +.++.+.+.+.++++ .+.+
T Consensus 24 ~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~----------------~~~~~v~l~vnd~~~~v~~~ 87 (230)
T 1rpx_A 24 KLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPIT----------------DLPLDVHLMIVEPDQRVPDF 87 (230)
T ss_dssp GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGC----------------CSCEEEEEESSSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhcc----------------CCcEEEEEEecCHHHHHHHH
Confidence 457889999999999654431 1 023444443321 233345556777653 3333
Q ss_pred ccccCCCceEEEeCC--CCeeechhhhhhcccCCCceEEEEc--CCHHHHHHHHHHHhcccCeEEEe
Q 024251 127 QPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 127 ~~~~~~~~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~v--~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
.. ..++.+.+... .-.- ++.++..+.+.+.++...+ .++.|+ +..+..|+|-|++.
T Consensus 88 -~~-~Gad~v~vh~~~~~~~~--~~~~~~~~~~~g~~ig~~~~p~t~~e~---~~~~~~~~d~vl~~ 147 (230)
T 1rpx_A 88 -IK-AGADIVSVHCEQSSTIH--LHRTINQIKSLGAKAGVVLNPGTPLTA---IEYVLDAVDLVLIM 147 (230)
T ss_dssp -HH-TTCSEEEEECSTTTCSC--HHHHHHHHHHTTSEEEEEECTTCCGGG---GTTTTTTCSEEEEE
T ss_pred -HH-cCCCEEEEEecCccchh--HHHHHHHHHHcCCcEEEEeCCCCCHHH---HHHHHhhCCEEEEE
Confidence 22 46788888776 4322 2456666654555666666 344443 23344677777544
No 264
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=33.12 E-value=66 Score=23.33 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=40.8
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccC-------CCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-------SGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~-------~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
..+.++.-..... ...+.++++..-... .--.++..+.. ....++.......+... .+.|++|.+.+
T Consensus 40 ~~~~~~al~~l~~-~~~dlvllD~~lp~~-~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~----~~~g~~~~l~K 113 (140)
T 3c97_A 40 VTNGLQALQAYQN-RQFDVIIMDIQMPVM-DGLEAVSEIRNYERTHNTKRASIIAITADTIDDDR----PGAELDEYVSK 113 (140)
T ss_dssp ESSHHHHHHHHHH-SCCSEEEECTTCCSS-CHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCC----CCSSCSEEEES
T ss_pred ECCHHHHHHHHhc-CCCCEEEEeCCCCCC-cHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHH----HhCChhheEeC
Confidence 3555543332222 356888885543221 11223444331 23455555443322211 17899999999
Q ss_pred cCCHHHHHHH
Q 024251 190 VEDVKAVLAL 199 (270)
Q Consensus 190 ~~d~~~v~~l 199 (270)
|-++.++.+.
T Consensus 114 P~~~~~L~~~ 123 (140)
T 3c97_A 114 PLNPNQLRDV 123 (140)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999877653
No 265
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=32.76 E-value=32 Score=27.41 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=29.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHhcccCeEEEecC-CHHHHHHH
Q 024251 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLAL 199 (270)
Q Consensus 159 ~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~-d~~~v~~l 199 (270)
...|+...... +......+++.|++|.+.+|- ++.++.+.
T Consensus 68 ~~~ii~lt~~~-~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~ 108 (223)
T 2hqr_A 68 SIVVLVSSDNP-TSEEEVHAFEQGADDYIAKPYRSIKALVAR 108 (223)
T ss_dssp TSEEEEEESSC-CHHHHHHHHHHTCSEEEETTCSCTHHHHHH
T ss_pred CCcEEEEECCC-CHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence 45666555443 345667888999999999999 99876543
No 266
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=32.70 E-value=42 Score=29.00 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=26.6
Q ss_pred HHHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 172 AQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 172 A~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
-+.+-.+.+.|+||++..+..|.+++.+++.+
T Consensus 125 ~~~a~~a~~~g~~GvV~sat~p~e~~~ir~~~ 156 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGGTKLDHITQYRRDF 156 (222)
T ss_dssp HHHHHHHHHHCCSEEEECTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCEEEECCCCHHHHHHHHHhC
Confidence 45666677899999999998899998888765
No 267
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=32.65 E-value=63 Score=32.08 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=64.5
Q ss_pred CCCCeEEEEEEecChhhhhhhccccCCCceE--------EEeCCCCeeechhh-----hhhcccC-CCceEEEEcCCH--
Q 024251 106 SGDRRVGSIIEVSTPQELQQLQPADGQAENI--------VIDLPDWQVIPAEN-----IVASFQG-SGKTVFAISKTP-- 169 (270)
Q Consensus 106 ~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~v--------vv~~~DWtiIPlEN-----lIA~~q~-~~~~i~a~v~~~-- 169 (270)
.+|.++..+..+.++++.+.+... .++.| +++.. -+|-|. ....++. .+..++....|+
T Consensus 264 ~DG~~~~l~an~~~p~d~~~a~~~--GadGVGL~RTE~l~ld~e---~~P~~~~q~~~~~~~~~~~~g~pv~VRtlD~g~ 338 (575)
T 2hwg_A 264 LDGHQVEVCANIGTVRDVEGAERN--GAEGVGLYRTEFLFMDRD---ALPTEEEQFAAYKAVAEACGSQAVIVRTMDIGG 338 (575)
T ss_dssp TTSCBCEEEEEESSTHHHHHHHHT--TCSSEEEEEHHHHHTTSS---SCCCHHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCCCEEEEEEeCCCHHHHHHHHhc--CCCeeeeeeehheecccc---cCCCHHHHHHHHHHHHHHcCCCceEEEeCCCCC
Confidence 568899999999999998887764 34444 55433 367663 2211111 133477777652
Q ss_pred ---------------------------------HHHHHHHHHHhcccCeEEEe-cCCHHHHHHHHHhhccc
Q 024251 170 ---------------------------------SEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDGR 206 (270)
Q Consensus 170 ---------------------------------~eA~~~l~~LE~G~DGVvl~-~~d~~~v~~l~~~~~~~ 206 (270)
.+.+..+.++..|..+|+++ ..+++|+++++++++..
T Consensus 339 Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~QlrAi~rA~~~G~~~Im~PmV~t~~E~~~a~~~v~~~ 409 (575)
T 2hwg_A 339 DKELPYMNFPKEENPFLGWRAIRIAMDRREILRDQLRAILRASAFGKLRIMFPMIISVEEVRALRKEIEIY 409 (575)
T ss_dssp SCCCGGGCCCCCSCGGGSSCTHHHHTTCHHHHHHHHHHHHHHTTSSCEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred ccchhhccCCCCCCccccchheeecccChHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 24477889999999999994 24799988888877543
No 268
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=32.52 E-value=1.7e+02 Score=26.75 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=44.6
Q ss_pred EecChhhhhhhccccCCCceEEEeCC-----------CCeeec----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLP-----------DWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEA 178 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~-----------DWtiIP----lENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~ 178 (270)
.+.++++...+.. ..+|.|++... +| -+| |..+....+..+..||+ .+.+..|+. .+
T Consensus 168 ~v~t~e~A~~a~~--aGaD~I~v~~g~G~~~~~r~~~g~-~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~---kA 241 (351)
T 2c6q_A 168 NVVTGEMVEELIL--SGADIIKVGIGPGSVCTTRKKTGV-GYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVA---KA 241 (351)
T ss_dssp EECSHHHHHHHHH--TTCSEEEECSSCSTTBCHHHHHCB-CCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHH---HH
T ss_pred eCCCHHHHHHHHH--hCCCEEEECCCCCcCcCccccCCC-CccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHH---HH
Confidence 5678887555544 35788877421 12 133 23443333333567888 888888865 56
Q ss_pred HhcccCeEEEecC
Q 024251 179 LEQGLGGIVLKVE 191 (270)
Q Consensus 179 LE~G~DGVvl~~~ 191 (270)
|..|+|+|.+-+.
T Consensus 242 lalGA~~V~vG~~ 254 (351)
T 2c6q_A 242 FGAGADFVMLGGM 254 (351)
T ss_dssp HHTTCSEEEESTT
T ss_pred HHcCCCceeccHH
Confidence 7889999998775
No 269
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=32.12 E-value=65 Score=24.76 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=42.2
Q ss_pred CCCCeEEEEEEecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHH
Q 024251 106 SGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL 179 (270)
Q Consensus 106 ~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~L 179 (270)
.+|..+-.-+.+.+..+++++.++ ||.-+|.+......|--.+.+-+.|+.+++..
T Consensus 14 rdgqeieidirvstgkeleralqe------------------lekalaragarnvqitisaendeqakelleli 69 (96)
T 2jvf_A 14 RDGQEIEIDIRVSTGKELERALQE------------------LEKALARAGARNVQITISAENDEQAKELLELI 69 (96)
T ss_dssp ETTEEEEEEEECCSSSHHHHHHHH------------------HHHHHHHHTCSEEEEEEECSSHHHHHHHHHHH
T ss_pred eCCeEEEEEEEEcccHHHHHHHHH------------------HHHHHHhccccceEEEEEecChHHHHHHHHHH
Confidence 345566677788888888886654 67788888777778888888889888877653
No 270
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=31.88 E-value=62 Score=26.59 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=38.0
Q ss_pred cChhhhhhhccccCCCceEEEeCCCCeeechhhhhh----cccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEE
Q 024251 118 STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA----~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
++++.++.+. ..+++.+|+-..+- -.|+.+ .-.+.+.+|++.+.+++.++.+. +.|+|-|+.
T Consensus 59 ~~~~~l~~a~--i~~ad~vi~~~~~d----~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~---~~G~~~vi~ 124 (234)
T 2aef_A 59 TRVSDLEKAN--VRGARAVIVDLESD----SETIHCILGIRKIDESVRIIAEAERYENIEQLR---MAGADQVIS 124 (234)
T ss_dssp TCHHHHHHTT--CTTCSEEEECCSCH----HHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHH---HHTCSEEEC
T ss_pred CCHHHHHhcC--cchhcEEEEcCCCc----HHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHH---HCCCCEEEC
Confidence 4445444332 35678888855542 334332 22234459999999999887654 579997654
No 271
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=31.74 E-value=49 Score=32.24 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 024251 169 PSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (270)
Q Consensus 169 ~~eA~~~l~~LE~G~DGVvl~-~~d~~~v~~l~~~~~~ 205 (270)
..|.+-...+++.|+|+|+++ .++++++++++++++.
T Consensus 172 ekD~~Di~~~l~~gvD~I~lsfV~saeDv~~~~~~l~~ 209 (470)
T 1e0t_A 172 EKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKA 209 (470)
T ss_dssp HHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 466777788899999999997 5689999999999854
No 272
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=31.63 E-value=82 Score=28.56 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=45.5
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeec---hhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIP---AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIP---lENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
...+.++.-..... ...|.++++..-+..=- ++.|-+. .....|+..... .+...+..+++.|+++.+.+|-+
T Consensus 29 ~a~~~~eal~~l~~-~~~DlvllDi~mP~~dG~ell~~lr~~--~~~~pvI~lT~~-~~~~~~~~a~~~Ga~~yl~KP~~ 104 (368)
T 3dzd_A 29 TAKTLREAEKKIKE-LFFPVIVLDVWMPDGDGVNFIDFIKEN--SPDSVVIVITGH-GSVDTAVKAIKKGAYEFLEKPFS 104 (368)
T ss_dssp EESSHHHHHHHHHH-BCCSEEEEESEETTEETTTHHHHHHHH--CTTCEEEEEECS-SCCHHHHHHHHHTCCEEEESSCC
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCeEEEEeCC-CCHHHHHHHHhcCcceEEeCCCC
Confidence 34555543322222 35678888543221111 1223222 234455554433 23345678899999999999999
Q ss_pred HHHHHH-HHHhh
Q 024251 193 VKAVLA-LKEYF 203 (270)
Q Consensus 193 ~~~v~~-l~~~~ 203 (270)
++++.. +++++
T Consensus 105 ~~~L~~~i~~~l 116 (368)
T 3dzd_A 105 VERFLLTIKHAF 116 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 987654 33444
No 273
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=30.64 E-value=1.2e+02 Score=27.56 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=45.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
...+.++.-..... ...+.++++..-+..=-+ .++..+. .....|+..... .+...+.++++.|+++.+.+|-++
T Consensus 29 ~a~~~~eal~~l~~-~~~DlvllD~~mp~~dG~-ell~~lr~~~~~~pvIvlT~~-~~~~~~~~a~~~Ga~dyl~KP~~~ 105 (387)
T 1ny5_A 29 SAERGKEAYKLLSE-KHFNVVLLDLLLPDVNGL-EILKWIKERSPETEVIVITGH-GTIKTAVEAMKMGAYDFLTKPCML 105 (387)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESBCSSSBHH-HHHHHHHHHCTTSEEEEEEET-TCHHHHHHHHTTTCCEEEEESCCH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEEEEeCC-CCHHHHHHHHhcCceEEecCCCCH
Confidence 34555543322222 356888886543221111 2222222 234455554433 234567788999999999999999
Q ss_pred HHHHHH
Q 024251 194 KAVLAL 199 (270)
Q Consensus 194 ~~v~~l 199 (270)
+++...
T Consensus 106 ~~L~~~ 111 (387)
T 1ny5_A 106 EEIELT 111 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 274
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=30.48 E-value=1.7e+02 Score=26.72 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=29.7
Q ss_pred CCeeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHHhcccCeEEEec-----CCHHH
Q 024251 142 DWQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKA 195 (270)
Q Consensus 142 DWtiIPlENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~LE~G~DGVvl~~-----~d~~~ 195 (270)
||..| +.++.. .+..||+ .+.++++|+.+ +|.|+|||++.+ +||..
T Consensus 175 ~~~lI--~~I~e~---~~vPVI~eGGI~TPsDAa~A---meLGAdgVlVgSAI~~a~dP~~ 227 (265)
T 1wv2_A 175 NPYNL--RIILEE---AKVPVLVDAGVGTASDAAIA---MELGCEAVLMNTAIAHAKDPVM 227 (265)
T ss_dssp CHHHH--HHHHHH---CSSCBEEESCCCSHHHHHHH---HHHTCSEEEESHHHHTSSSHHH
T ss_pred CHHHH--HHHHhc---CCCCEEEeCCCCCHHHHHHH---HHcCCCEEEEChHHhCCCCHHH
Confidence 55554 445442 2344555 46889988765 556999999876 46654
No 275
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=29.42 E-value=20 Score=27.67 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=23.8
Q ss_pred ccceeeeEEEEEEE--EeccccceeEEeccceeEEeeccccCCCCCCCCceeccCc
Q 024251 210 SNLLSLMKATVTRV--DVAGMGDRVCVDLCRLFLVHSECLESNYIASRPFRVNAVS 263 (270)
Q Consensus 210 ~~~l~L~~a~Vt~V--~~vGmGdRVCVDtcSmFLVhsEt~e~pYva~RPFRVNAGa 263 (270)
++.|.-..|+.+.+ +++-.||+|.||-... + -.+..++.+-.+-+|.+..|.
T Consensus 12 ~~~l~~~~a~~~~v~~~~~~~gD~V~v~Y~g~-~-dG~~fdss~~~p~~f~lG~g~ 65 (113)
T 1hxv_A 12 SEKLAKTKSTMVDVSDKKLANGDIAIIDFTGI-V-DNKKLASASAQNYELTIGSNS 65 (113)
T ss_dssp -----------------CCCSSEEEEEEEEEE-E-TTEECSTTCCSEEEEEETSSC
T ss_pred HHHHHHhCCeEEecCCCCCCCCCEEEEEEEEE-E-CCEEcccCCccCEEEEECCCC
Confidence 34555556666656 4788999999997654 3 555566665444445555443
No 276
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=29.22 E-value=93 Score=27.57 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=50.5
Q ss_pred cChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhc-ccCeEEEecCCH
Q 024251 118 STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDV 193 (270)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~-G~DGVvl~~~d~ 193 (270)
.++-++.++. ..++|.+++...-=+---|+.++..+..-+-.+++++.|.+|++. +++. |+|=|-+..+|.
T Consensus 111 ~~~~qi~ea~--~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~~~eE~~~---A~~l~g~~iIGinnr~l 182 (251)
T 1i4n_A 111 IDTVQVKLAS--SVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEK---VFSVIRPKIIGINTRDL 182 (251)
T ss_dssp CSTHHHHHHH--HTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHH---HHTTCCCSEEEEECBCT
T ss_pred CCHHHHHHHH--HcCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH---HHhcCCCCEEEEeCccc
Confidence 4444545533 246788888666322234788888888888899999999999664 5678 999888877653
No 277
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=29.14 E-value=2.2e+02 Score=25.58 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=37.9
Q ss_pred CCceEEEeCCCCeeechhhhhhccc-CCCceEEEEcCCHH-HHHHHHHHHhcccCeEEEecCCH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ-GSGKTVFAISKTPS-EAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q-~~~~~i~a~v~~~~-eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
+-|.++++..-...=-+ .++..+. .....++......+ +++...++++.|+++++.+|-++
T Consensus 49 ~pDlVllDi~mp~~dGl-ell~~l~~~~p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~ 111 (349)
T 1a2o_A 49 NPDVLTLDVEMPRMDGL-DFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLG 111 (349)
T ss_dssp CCSEEEEECCCSSSCHH-HHHHHHHHSSCCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCc
Confidence 46888886543321111 2222221 12356666665554 46788999999999999999873
No 278
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=29.11 E-value=1.3e+02 Score=28.93 Aligned_cols=116 Identities=12% Similarity=0.040 Sum_probs=71.8
Q ss_pred EEEEe-CchhHHHHHHHhCCcEEEEc---------CcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhh
Q 024251 53 VWIWT-ESKQVMTAAVERGWNTFVFL---------SENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (270)
Q Consensus 53 vWiw~-~~Ke~vT~ALEsG~d~~vv~---------~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed 122 (270)
.+|-. .+-..|-.+.|.|+.++=+- .++...+++--++ |+.-+| -|.++-+
T Consensus 62 G~i~~~~~~~~iA~~y~~~A~~IsvLTd~~~F~gs~~dL~~vr~~v~l----PvLrKD---------------FI~d~~Q 122 (452)
T 1pii_A 62 GVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQ----PILCKD---------------FIIDPYQ 122 (452)
T ss_dssp EESCSSCCHHHHHHHHTTTCSEEEEECCSTTTCCCTTHHHHHHHHCCS----CEEEES---------------CCCSHHH
T ss_pred CccCCCCCHHHHHHHHHhhCcEEEEEecccccCCCHHHHHHHHHhcCC----CeEEEe---------------ccCCHHH
Confidence 34433 35666666777788887662 2223333332222 332222 2355555
Q ss_pred hhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCC
Q 024251 123 LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d 192 (270)
+.++. ..++|-|++...-=+---|+.|+..++.-+-.++++++|.+|++.++ +.|+|=|-+..+|
T Consensus 123 i~ea~--~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~---~lga~iIGinnr~ 187 (452)
T 1pii_A 123 IYLAR--YYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAI---ALGAKVVGINNRD 187 (452)
T ss_dssp HHHHH--HTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHH---HTTCSEEEEESEE
T ss_pred HHHHH--HcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH---HCCCCEEEEeCCC
Confidence 55533 34678888877743333478888888777889999999999998754 5699977666554
No 279
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*
Probab=28.88 E-value=46 Score=30.91 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCCeeechhhhhhcccC--CCc----eEEE-EcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHH
Q 024251 141 PDWQVIPAENIVASFQG--SGK----TVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 141 ~DWtiIPlENlIA~~q~--~~~----~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l 199 (270)
..|...|.+.+-.+.+. +++ +|.+ .|+++++++.+ ++.|+|||+ |+.|+.+.++
T Consensus 217 tnC~~r~~~rl~~ai~~RDs~~~~i~~V~vWTVNd~~~m~~l---~~~GVDGII--TD~Pd~l~~~ 277 (302)
T 3rlg_A 217 TNCLPRGLSRVNAAVANRDSANGFINKVYYWTVDKRSTTRDA---LDAGVDGIM--TNYPDVITDV 277 (302)
T ss_dssp CTTSCCCSHHHHHHHHHHTSTTCCCSEEEEECCCSHHHHHHH---HHTTCSEEE--ESCHHHHHHH
T ss_pred ccceeccHHHHHHHHHhccCCCCceEEEEEEeCCCHHHHHHH---HHcCCCEEE--CCCHHHHHHH
Confidence 35777888555332222 222 3332 46887777765 579999999 8888866554
No 280
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=28.80 E-value=98 Score=30.28 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=58.5
Q ss_pred hhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCC
Q 024251 60 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (270)
Q Consensus 60 Ke~vT~ALEsG~d~~vv~~~~------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~ 133 (270)
.+.+..|++.|++.|-++..+ .++++++..+.. .-| +.+-|.+.-| ++.. -.+
T Consensus 28 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~-------------~~~----v~liIND~~d---lA~~-~gA 86 (540)
T 3nl6_A 28 YGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCH-------------AHN----VPLIINDRID---VAMA-IGA 86 (540)
T ss_dssp HHHHHHHHHTTCSEEEECCSSSCTTHHHHHHHHHHHHHH-------------HTT----CCEEECSCSH---HHHH-TTC
T ss_pred HHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHHHHHH-------------hcC----CEEEEeCcHH---HHHH-cCC
Confidence 488999999999999987543 233444433322 001 1122333222 1211 234
Q ss_pred ceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcc---cCeEEE
Q 024251 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQG---LGGIVL 188 (270)
Q Consensus 134 ~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G---~DGVvl 188 (270)
+-|=+...|- |+..+-..+ +.+..|-..+++++||+.+ .+.| +|-|.+
T Consensus 87 dGVHLgq~dl---~~~~ar~~l-g~~~iiG~S~ht~eea~~A---~~~G~~~aDYv~~ 137 (540)
T 3nl6_A 87 DGIHVGQDDM---PIPMIRKLV-GPDMVIGWSVGFPEEVDEL---SKMGPDMVDYIGV 137 (540)
T ss_dssp SEEEECTTSS---CHHHHHHHH-CTTSEEEEEECSHHHHHHH---HHTCC--CCEEEE
T ss_pred CEEEEChhhc---CHHHHHHHh-CCCCEEEEECCCHHHHHHH---HHcCCCCCCEEEE
Confidence 5666655554 444332222 3455788899999998754 5678 999998
No 281
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=28.78 E-value=69 Score=27.23 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=37.0
Q ss_pred CceEEEeCCCCeeechhhhhhcccCCCceEEEE-c----CCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAI-S----KTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 133 ~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~-v----~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
.+.+-+ ++..++ +.++..++..+-++++- + +++++++.+ ++.|+|||+ ||+|..+.+
T Consensus 190 ~~~v~~---~~~~~~-~~~v~~~~~~G~~v~~wTv~~~~n~~~~~~~l---~~~GvdgI~--TD~p~~~~~ 251 (258)
T 2o55_A 190 ANGVSM---LFHYLT-KEQVCTAHEKGLSVTVWMPWIFDDSEEDWKKC---LELQVDLIC--SNYPFGLMN 251 (258)
T ss_dssp CSEEEE---EGGGCC-HHHHHHHHHTTCEEEEECCTTCCCCHHHHHHH---HHHTCSEEE--ESCHHHHHH
T ss_pred CeEEec---ChhhcC-HHHHHHHHHCCCEEEEeeCCCCCCCHHHHHHH---HHcCCCEEE--eCCHHHHHH
Confidence 344444 344444 55777777777666554 5 677777665 579999977 788886544
No 282
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=28.10 E-value=70 Score=27.99 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=39.7
Q ss_pred ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhh----cccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA----~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
.++++.++++- ..+++.+++-..| +-.|+.+ +-.+.+.++++.+.+.+.++.+. +.|+|-|+..
T Consensus 164 ~~~~~~L~~a~--i~~a~~vi~~~~~----d~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l~---~~G~d~vi~~ 231 (336)
T 1lnq_A 164 PTRVSDLEKAN--VRGARAVIVDLES----DSETIHCILGIRKIDESVRIIAEAERYENIEQLR---MAGADQVISP 231 (336)
T ss_dssp TTSHHHHHHTC--STTEEEEEECCSS----HHHHHHHHHHHHTTCTTSEEEEECSSGGGHHHHH---HTTCSEEECH
T ss_pred CCCHHHHHhcC--hhhccEEEEcCCc----cHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH---HcCCCEEECh
Confidence 34555554432 3457777775544 2455543 22234458999999999887654 5799977643
No 283
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=27.46 E-value=24 Score=32.80 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=51.1
Q ss_pred CceEEEeCCCCeeec--hhhhhhcccCCCce-EEEEcCCHHHHHHHHHHHhccc----CeEEE-----ecCCHHHHHHHH
Q 024251 133 AENIVIDLPDWQVIP--AENIVASFQGSGKT-VFAISKTPSEAQIFLEALEQGL----GGIVL-----KVEDVKAVLALK 200 (270)
Q Consensus 133 ~~~vvv~~~DWtiIP--lENlIA~~q~~~~~-i~a~v~~~~eA~~~l~~LE~G~----DGVvl-----~~~d~~~v~~l~ 200 (270)
.-+|++..++++.-| ++.|. +.+....+ ++.-+....+...+.+.|++|+ ||+.+ .|.|-.-++.++
T Consensus 206 G~Pv~iHt~~~~~~~e~l~iL~-eeG~~~~~vvi~H~~~~~d~~~~~~~l~~G~yl~fD~iG~~~~~~~p~d~~r~~~l~ 284 (360)
T 3tn4_A 206 GAVIITHTQEGTMGPEQAAYLL-EHGADPKKIVIGHMCDNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLL 284 (360)
T ss_dssp CCEEEEECSTTCCHHHHHHHHH-HTTCCGGGEEECCGGGCCCHHHHHHHHTTTCEEEECCTTCCCSTTCCCHHHHHHHHH
T ss_pred CCcEEEEcCcccCCHHHHHHHH-HcCCCCCceEEEcCCCCCCHHHHHHHHHcCCEEEEcccccccccCCCChHHHHHHHH
Confidence 457777777776533 23332 32222223 3334322234455566677765 33322 233344445555
Q ss_pred HhhccccccccceeeeEEEEEEEEeccccceeEE--eccceeEEeeccccCCCCCCCCceec
Q 024251 201 EYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCV--DLCRLFLVHSECLESNYIASRPFRVN 260 (270)
Q Consensus 201 ~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCV--DtcSmFLVhsEt~e~pYva~RPFRVN 260 (270)
+++++ |-.||+-+ |.+.. ..-.||..|.|||=.
T Consensus 285 ~lv~~---------------------g~~drILLstDa~~~------~~~~py~~p~p~r~~ 319 (360)
T 3tn4_A 285 ALLRD---------------------GYEKQIMLSHDTVNV------WLGRPFTLPEPFAEM 319 (360)
T ss_dssp HHHHT---------------------TCGGGEEECCCCEEE------ESSSCCCCCHHHHHH
T ss_pred HHHHh---------------------cCcceEEEecCCCcc------cccCCCCCccccccc
Confidence 55432 56777776 43221 124599999999943
No 284
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=27.27 E-value=1.5e+02 Score=21.33 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=37.8
Q ss_pred CCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhc-ccCeEEEecCCHHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVKAVLAL 199 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~-G~DGVvl~~~d~~~v~~l 199 (270)
..+.++++..-.. +.--.++..+. .....++......+ ......+++. |++|.+.+|-++.++...
T Consensus 44 ~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ii~~s~~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 112 (139)
T 2jk1_A 44 WVQVIICDQRMPG-RTGVDFLTEVRERWPETVRIIITGYTD-SASMMAAINDAGIHQFLTKPWHPEQLLSS 112 (139)
T ss_dssp CEEEEEEESCCSS-SCHHHHHHHHHHHCTTSEEEEEESCTT-CHHHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCcEEEEeCCCC-hHHHHHHHHhhchhhhccCCCCHHHHHHH
Confidence 4577777654322 11112333332 23456665554443 3445666766 599999999999876543
No 285
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=27.22 E-value=2.4e+02 Score=25.02 Aligned_cols=129 Identities=18% Similarity=0.111 Sum_probs=65.8
Q ss_pred CCcEEEEEeC---chhHHHHHHHhCCcEEEEc-Cc--chhhhhhccceeeeeeeeecCCcc---ccC----CCCeEEEEE
Q 024251 49 KPKRVWIWTE---SKQVMTAAVERGWNTFVFL-SE--NQQLAIDWSTIALLDPLFIKEGEV---YDS----GDRRVGSII 115 (270)
Q Consensus 49 ~~K~vWiw~~---~Ke~vT~ALEsG~d~~vv~-~~--~~e~a~~l~~i~~i~~l~~~~g~~---~~~----~gk~v~~~v 115 (270)
..+.|-|+-- ---.+..|...|+..+++- .. ..++++++|--..++. .+.+. +.+ .+..+=+.+
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~---~~~~~~~~i~~~~~~~~gg~Dvvi 258 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDP---SAGDVVEAIAGPVGLVPGGVDVVI 258 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECT---TSSCHHHHHHSTTSSSTTCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECC---CCcCHHHHHHhhhhccCCCCCEEE
Confidence 4456767642 2334566667788544433 21 2455666664333321 12211 111 111333445
Q ss_pred EecC-hhhhhhhccccCCCceEEEeCCC----CeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccC
Q 024251 116 EVST-PQELQQLQPADGQAENIVIDLPD----WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (270)
Q Consensus 116 ~V~~-~ed~e~~~~~~~~~~~vvv~~~D----WtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~D 184 (270)
+..+ ++.++.+...++....+++-+.. .--+|+-.++.. +-+|........+-+.+++.++.|--
T Consensus 259 d~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~----~~~i~g~~~~~~~~~~~~~l~~~g~i 328 (370)
T 4ej6_A 259 ECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFR----ELRVLGSFINPFVHRRAADLVATGAI 328 (370)
T ss_dssp ECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHT----TCEEEECCSCTTCHHHHHHHHHTTCS
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhC----CcEEEEeccChHHHHHHHHHHHcCCC
Confidence 5555 56666666555555555553321 123555555543 44666666666677778888888753
No 286
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=27.00 E-value=97 Score=29.72 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=35.5
Q ss_pred CCCceEEEeCCCCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
+..+.+.|+.....---+.++|.++... +..|++ .+.+.++|+.+. +.|+|+|.+.
T Consensus 242 aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~---~aGaD~I~Vg 300 (496)
T 4fxs_A 242 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALI---EAGVSAVKVG 300 (496)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHH---HHTCSEEEEC
T ss_pred ccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHH---HhCCCEEEEC
Confidence 3588999987754322233444444322 234544 588999887765 6799999984
No 287
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=26.93 E-value=18 Score=31.38 Aligned_cols=29 Identities=10% Similarity=-0.149 Sum_probs=20.5
Q ss_pred EcCCHHHHHHHHHHHhcccCeEEEecCCHHHH
Q 024251 165 ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (270)
Q Consensus 165 ~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v 196 (270)
.+-+.++++.++ +.|+|||++...|+.-+
T Consensus 84 tvl~~d~~~~A~---~aGAd~v~~p~~d~~v~ 112 (225)
T 1mxs_A 84 TVLDRSMFAAVE---AAGAQFVVTPGITEDIL 112 (225)
T ss_dssp CCCSHHHHHHHH---HHTCSSEECSSCCHHHH
T ss_pred eEeeHHHHHHHH---HCCCCEEEeCCCCHHHH
Confidence 445667777654 56999999887776544
No 288
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=26.76 E-value=1.1e+02 Score=28.65 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=26.0
Q ss_pred CCCcEEEEEe--CchhHHHHHHHh-CCcEEEEc
Q 024251 48 SKPKRVWIWT--ESKQVMTAAVER-GWNTFVFL 77 (270)
Q Consensus 48 ~~~K~vWiw~--~~Ke~vT~ALEs-G~d~~vv~ 77 (270)
..||..|.|. ++++.+..+-+. |+++|.+.
T Consensus 19 ~~m~~~~rW~g~~d~~~L~~i~q~~G~~gIe~~ 51 (386)
T 3bdk_A 19 SHMKMSFRWYGKKDPVTLEEIKAIPGMQGIVTA 51 (386)
T ss_dssp CCBCCCCBCCCTTCSSCHHHHHTSTTCCEEEEC
T ss_pred chhhcEEEecCCCCHHHHHHHHhcCCCCEEEeC
Confidence 4689999998 577899999999 99999865
No 289
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=26.60 E-value=47 Score=33.38 Aligned_cols=84 Identities=8% Similarity=0.133 Sum_probs=49.9
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeech----hh---hhhcccC--CCceEEEEcCCHHHHHHHHHHHhcccCeE
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPA----EN---IVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPl----EN---lIA~~q~--~~~~i~a~v~~~~eA~~~l~~LE~G~DGV 186 (270)
...+.++.-.......+.+-+|+ ||.. |- .+ ++..+.. ...-||......+.-.-...-|+.|+|+.
T Consensus 37 ~a~~g~~al~~~~~~~~~d~vil---Di~l-p~~~~~~~G~~ll~~iR~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddy 112 (755)
T 2vyc_A 37 KSTSFDDGFAILSSNEAIDCLMF---SYQM-EHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLELVDEF 112 (755)
T ss_dssp EESSHHHHHHHHTTTCCCSEEEE---ECCC-CSHHHHHHHHHHHHHHHHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEE
T ss_pred EECCHHHHHHHHhcCCCCcEEEE---eCCC-CcccccccHHHHHHHHHHhCCCCCEEEEecCCcchhhccHhHhhcCCce
Confidence 34566664444444334788999 4554 53 22 4444332 23567766554330223334588999999
Q ss_pred EEecCCHHH--HHHHHHhh
Q 024251 187 VLKVEDVKA--VLALKEYF 203 (270)
Q Consensus 187 vl~~~d~~~--v~~l~~~~ 203 (270)
+-.|.|..+ +++++..+
T Consensus 113 i~kpf~~~efl~~ri~a~~ 131 (755)
T 2vyc_A 113 AWILEDTADFIAGRAVAAM 131 (755)
T ss_dssp EETTTSCHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 999999988 45555544
No 290
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=26.02 E-value=81 Score=26.68 Aligned_cols=36 Identities=11% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEEcCcchhhhhhc
Q 024251 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (270)
Q Consensus 49 ~~K~vWiw~-~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l 87 (270)
+.+.+|+|+ .+++.+...++. +|+|+.+. .+...++
T Consensus 197 ~G~~v~~wTvn~~~~~~~l~~~-vdgIiTD~--P~~~~~~ 233 (234)
T 1o1z_A 197 KGIVIFVWTLNDPEIYRKIRRE-IDGVITDE--VELFVKL 233 (234)
T ss_dssp TTCEEEEESCCCHHHHHHHGGG-CSEEEESC--HHHHHHT
T ss_pred cCCEEEEeCCCCHHHHHHHHHh-CCEEEcCC--HHHHhhc
No 291
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A
Probab=25.80 E-value=2.1e+02 Score=25.08 Aligned_cols=120 Identities=14% Similarity=0.236 Sum_probs=69.4
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCcch----hhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecCh-----
Q 024251 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSENQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTP----- 120 (270)
Q Consensus 52 ~vWiw~--~~Ke~vT~ALEsG~d~~vv~~~~~----e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~----- 120 (270)
..|++. .+.+.+..|+. |+|.++++-||. ++......+.-. +..+.. .++.|.+.
T Consensus 8 rs~L~vP~~~~~~~~ka~~-gaD~vilDlEDav~~~~k~~Ar~~l~~~-----------~~~~~~--~~VRVn~~~~~~~ 73 (273)
T 1u5h_A 8 PGWLFCPADAPEAFAAAAA-AADVVILDLEDGVAEAQKPAARNALRDT-----------PLDPER--TVVRINAGGTADQ 73 (273)
T ss_dssp SEEEEEETTCGGGHHHHHH-HCSEEEEESSTTSCGGGHHHHHHHHHHS-----------CCCTTS--EEEECCCTTCHHH
T ss_pred CeEEEeeCCCHHHHHHHHh-CCCEEEEECCCCCCcCCHHHHHHHHHhc-----------CcCCCe--EEEEECCCCchHH
Confidence 356665 46788888999 999999998763 111111111100 112333 34455543
Q ss_pred -hhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHh-cccCeEEEecCCHH
Q 024251 121 -QELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLKVEDVK 194 (270)
Q Consensus 121 -ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE-~G~DGVvl~~~d~~ 194 (270)
+|+..+.. ...+.+++ +++=-.|.+-+ +. ...+++.+.|++-..-+-+++. -|++|+.+-+.|..
T Consensus 74 ~~dl~~~~~--~g~~gi~l----PKv~s~~~v~~-~~--~~~i~~~IET~~~v~~~~eIaa~~~v~~l~~G~~Dl~ 140 (273)
T 1u5h_A 74 ARDLEALAG--TAYTTVML----PKAESAAQVIE-LA--PRDVIALVETARGAVCAAEIAAADPTVGMMWGAEDLI 140 (273)
T ss_dssp HHHHHHHHT--SCCCEEEE----TTCCCHHHHHT-TT--TSEEEEEECSHHHHHTHHHHHHSTTEEEEEECHHHHH
T ss_pred HHHHHHHHh--cCCCEEEe----CCCCCHHHHHH-Hh--hCCEEEEEeCHHHHHhHHHHhcCCCCcEEEecHHHHH
Confidence 34444332 24556666 23323333322 21 5689999999988777777764 47999998877543
No 292
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=25.71 E-value=26 Score=30.89 Aligned_cols=33 Identities=24% Similarity=0.056 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHhcccCeEEEecCCHHHHHHHHH
Q 024251 166 SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (270)
Q Consensus 166 v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (270)
+-+.++++. +++.|+|.|+..--|++-++..++
T Consensus 93 Vlt~~~a~~---Ai~AGA~fIvsP~~~~~vi~~~~~ 125 (232)
T 4e38_A 93 ILNGEQALA---AKEAGATFVVSPGFNPNTVRACQE 125 (232)
T ss_dssp CCSHHHHHH---HHHHTCSEEECSSCCHHHHHHHHH
T ss_pred cCCHHHHHH---HHHcCCCEEEeCCCCHHHHHHHHH
Confidence 456666665 456799999987778776655444
No 293
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=25.70 E-value=73 Score=26.31 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=21.7
Q ss_pred CCHH-HHHHHHHHHhcccCeEEEecCCHHHHH
Q 024251 167 KTPS-EAQIFLEALEQGLGGIVLKVEDVKAVL 197 (270)
Q Consensus 167 ~~~~-eA~~~l~~LE~G~DGVvl~~~d~~~v~ 197 (270)
.+.+ +.+.+-..+++|+|||++.|.|.....
T Consensus 41 ~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 72 (306)
T 8abp_A 41 PDGEKTLNAIDSLAASGAKGFVICTPDPKLGS 72 (306)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhH
Confidence 4444 344555667899999999998876443
No 294
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=25.64 E-value=87 Score=28.88 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhcccCeEEEecCC------HHHHHHHHHhhc
Q 024251 167 KTPSEAQIFLEALEQGLGGIVLKVED------VKAVLALKEYFD 204 (270)
Q Consensus 167 ~~~~eA~~~l~~LE~G~DGVvl~~~d------~~~v~~l~~~~~ 204 (270)
..|+=.+.++-+.+-|+|||.+.++. -.++..|++.+.
T Consensus 51 ~~PDpv~aA~~ae~aGAdGITvHlReDrRHI~d~Dv~~L~~~i~ 94 (278)
T 3gk0_A 51 AYPDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPRVK 94 (278)
T ss_dssp SCSCHHHHHHHHHHTTCSEEEEECCTTCSSSCHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHcCCCEEEeccCCCcccCCHHHHHHHHHHcC
Confidence 44556667788889999999998873 577888888774
No 295
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=25.29 E-value=41 Score=32.85 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=53.1
Q ss_pred Chhhhhhhc---cccCCCceEEEeCC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCH
Q 024251 119 TPQELQQLQ---PADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (270)
Q Consensus 119 ~~ed~e~~~---~~~~~~~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~ 193 (270)
+.+|.+-+. ......|++.+.|- -=.+.-+-+++.+.. .+..|++...+.+--+-+-++++. +|||++.+.|.
T Consensus 180 TekD~~dl~~~~~~~~~vD~Ia~SfVr~a~Dv~~~r~~l~~~g-~~~~iiaKIE~~eav~nldeIl~~-sDgImVaRGDL 257 (461)
T 3qtg_A 180 AEEDVEALKAISPIRDNIDYVAISLAKSCKDVDSVRSLLTELG-FQSQVAVKIETKGAVNNLEELVQC-SDYVVVARGDL 257 (461)
T ss_dssp CHHHHHHHHHHGGGGGGCCEEEECSCCSHHHHHHHHHHHHHTT-CCCEEEEEECSHHHHHTHHHHHHT-CSEEEEEHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCEEEecCCCCHHHHHHHHHHHHhcC-CCceEEEEECCHHHHHhHHHHHHh-cccEEEccccc
Confidence 444444443 22235899999774 223555566777653 458999999999999999999998 89999998775
Q ss_pred H
Q 024251 194 K 194 (270)
Q Consensus 194 ~ 194 (270)
+
T Consensus 258 g 258 (461)
T 3qtg_A 258 G 258 (461)
T ss_dssp T
T ss_pred c
Confidence 3
No 296
>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A
Probab=24.78 E-value=59 Score=28.02 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=25.2
Q ss_pred HHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 173 QIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 173 ~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
+++-.+.+.|+||++..+..+.+++.+|+.+
T Consensus 119 ~~a~~a~~~G~~GvV~sat~~~e~~~ir~~~ 149 (215)
T 3ve9_A 119 YLREVARRVNPKGFVAPATRPSMISRVKGDF 149 (215)
T ss_dssp HHHHHHHHHCCSEEECCTTSHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCceeeCCCCHHHHHHHHHhC
Confidence 4555667889999999988888888888765
No 297
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=24.41 E-value=3.8e+02 Score=24.46 Aligned_cols=74 Identities=11% Similarity=0.049 Sum_probs=50.6
Q ss_pred CCCceEEEeCCCC----------eeechhhhhhcc---------cCCCceEEEEcCCH-----HHHHH-HHHHHhcccCe
Q 024251 131 GQAENIVIDLPDW----------QVIPAENIVASF---------QGSGKTVFAISKTP-----SEAQI-FLEALEQGLGG 185 (270)
Q Consensus 131 ~~~~~vvv~~~DW----------tiIPlENlIA~~---------q~~~~~i~a~v~~~-----~eA~~-~l~~LE~G~DG 185 (270)
..+.-|-|+...| +++|.|..++.+ .+.+.-|+|..... +||-. +.--.|.|+|+
T Consensus 115 aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ 194 (307)
T 3lye_A 115 SGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADV 194 (307)
T ss_dssp TTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSE
T ss_pred cCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCE
Confidence 3466677877766 489998765544 14456788887764 34433 33347899999
Q ss_pred EEEec-CCHHHHHHHHHhhc
Q 024251 186 IVLKV-EDVKAVLALKEYFD 204 (270)
Q Consensus 186 Vvl~~-~d~~~v~~l~~~~~ 204 (270)
|.+.- .|+++++++.+.+.
T Consensus 195 ifi~~~~~~~~~~~i~~~~~ 214 (307)
T 3lye_A 195 GLLEGFRSKEQAAAAVAALA 214 (307)
T ss_dssp EEECCCSCHHHHHHHHHHHT
T ss_pred EEecCCCCHHHHHHHHHHcc
Confidence 99864 57888888877663
No 298
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=24.31 E-value=41 Score=28.38 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=26.0
Q ss_pred EcCCHHHHHHHHHHHhcccCeEEEecC---CHHHHHHHHHhh
Q 024251 165 ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (270)
Q Consensus 165 ~v~~~~eA~~~l~~LE~G~DGVvl~~~---d~~~v~~l~~~~ 203 (270)
.++++++++.++ +.|+|+|++-+. ||..+.++.+.+
T Consensus 87 gi~~~~~~~~~l---~~Gad~V~ig~~~l~dp~~~~~~~~~~ 125 (247)
T 3tdn_A 87 GAGKMEHFLEAF---LRGADKVSINTAAVENPSLITQIAQTF 125 (247)
T ss_dssp CCCSHHHHHHHH---HTTCSEECCSHHHHHCTHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---HcCCCeeehhhHHhhChHHHHHHHHHh
Confidence 367888877765 679999999884 666566655444
No 299
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=24.07 E-value=1.7e+02 Score=22.66 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=20.9
Q ss_pred HHHHHHhcccCeEEEecCCHHHHHH
Q 024251 174 IFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 174 ~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
...++++.|+++.+.+|=++.++.+
T Consensus 101 ~~~~~~~~Ga~~yl~KP~~~~~L~~ 125 (134)
T 3to5_A 101 QIIEAAQAGVNGYIVKPFTAATLKE 125 (134)
T ss_dssp HHHHHHHTTCCEEEESSCCHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHH
Confidence 4567889999999999999987644
No 300
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=24.04 E-value=3.5e+02 Score=23.42 Aligned_cols=127 Identities=12% Similarity=0.119 Sum_probs=72.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCc-----------chhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhh
Q 024251 58 ESKQVMTAAVERGWNTFVFLSE-----------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQL 126 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~-----------~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~ 126 (270)
+.++++..+.+.|++.|.+... ..+..+.+.+ ..+.++.+.. .+.++++.+
T Consensus 27 ~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~----------------~~~~~v~~l~--~n~~~i~~a 88 (295)
T 1ydn_A 27 DKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRR----------------ADGVRYSVLV--PNMKGYEAA 88 (295)
T ss_dssp HHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCC----------------CSSSEEEEEC--SSHHHHHHH
T ss_pred HHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHh----------------CCCCEEEEEe--CCHHHHHHH
Confidence 3577888888899999887531 1122222211 1244554443 566776665
Q ss_pred ccccCCCceEEEeCCCC-------eeechh-hh------hhcccCCCceEEE-----------EcCCHHHHHHHHH-HHh
Q 024251 127 QPADGQAENIVIDLPDW-------QVIPAE-NI------VASFQGSGKTVFA-----------ISKTPSEAQIFLE-ALE 180 (270)
Q Consensus 127 ~~~~~~~~~vvv~~~DW-------tiIPlE-Nl------IA~~q~~~~~i~a-----------~v~~~~eA~~~l~-~LE 180 (270)
... ..+.|-+...-+ ...+.| |+ +..+...+.++-+ .-.+++++.-+++ +.|
T Consensus 89 ~~~--G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~ 166 (295)
T 1ydn_A 89 AAA--HADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFS 166 (295)
T ss_dssp HHT--TCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHH
T ss_pred HHC--CCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHh
Confidence 543 455666653333 012333 22 4444444445531 2357888777666 558
Q ss_pred cccCeEEEec----CCHHHHHHHHHhhc
Q 024251 181 QGLGGIVLKV----EDVKAVLALKEYFD 204 (270)
Q Consensus 181 ~G~DGVvl~~----~d~~~v~~l~~~~~ 204 (270)
.|+|-|-|.. -.|.++.++-+.+.
T Consensus 167 ~G~d~i~l~Dt~G~~~P~~~~~lv~~l~ 194 (295)
T 1ydn_A 167 LGCHEVSLGDTIGRGTPDTVAAMLDAVL 194 (295)
T ss_dssp HTCSEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred cCCCEEEecCCCCCcCHHHHHHHHHHHH
Confidence 9999998883 36788877766553
No 301
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=23.80 E-value=1.6e+02 Score=26.61 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCCceEEEeCCCC------------eeechhhhhh-------cccCCCceEEEEcCCH------HHHHHH-HHHHhcccC
Q 024251 131 GQAENIVIDLPDW------------QVIPAENIVA-------SFQGSGKTVFAISKTP------SEAQIF-LEALEQGLG 184 (270)
Q Consensus 131 ~~~~~vvv~~~DW------------tiIPlENlIA-------~~q~~~~~i~a~v~~~------~eA~~~-l~~LE~G~D 184 (270)
..+.-|-|+...| +++|.|..+. +....+..|++..... +||--= ....|.|+|
T Consensus 102 aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd 181 (290)
T 2hjp_A 102 AGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGAD 181 (290)
T ss_dssp HTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHHTTCS
T ss_pred hCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHHcCCc
Confidence 3466777777755 3788887652 2222456788876654 666433 344456999
Q ss_pred eEEEec--CCHHHHHHHHHhhc
Q 024251 185 GIVLKV--EDVKAVLALKEYFD 204 (270)
Q Consensus 185 GVvl~~--~d~~~v~~l~~~~~ 204 (270)
+|++.. .|+++++++.+.+.
T Consensus 182 ~i~~e~~~~~~~~~~~i~~~~~ 203 (290)
T 2hjp_A 182 AILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_dssp EEEECCCCSSSHHHHHHHHHCC
T ss_pred EEEeCCCCCCHHHHHHHHHHcC
Confidence 999976 46788888777663
No 302
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=23.59 E-value=1e+02 Score=25.21 Aligned_cols=28 Identities=7% Similarity=0.138 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 171 EAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 171 eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
+.+..-..+++|+|||++.|.+......
T Consensus 50 ~~~~~~~l~~~~vdgiIi~~~~~~~~~~ 77 (291)
T 3l49_A 50 QVSQIQTLIAQKPDAIIEQLGNLDVLNP 77 (291)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhhHH
Confidence 3455556678999999999988654433
No 303
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=23.52 E-value=70 Score=28.80 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=37.1
Q ss_pred Chhhhhhhcccc-CC--CceEEEeCCCCeeechhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHHhcccCeEEE
Q 024251 119 TPQELQQLQPAD-GQ--AENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 119 ~~ed~e~~~~~~-~~--~~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~a~-v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
.+++++.+.... .. .+.+.++...=.--+..++|..+... ..-|+.. +.++++|+.+ .+.|+|+|++
T Consensus 104 ~~~~~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a---~~aGad~Ivv 176 (336)
T 1ypf_A 104 KEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVREL---ENAGADATKV 176 (336)
T ss_dssp SHHHHHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHH---HHHTCSEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHH---HHcCCCEEEE
Confidence 355555533322 22 66777754210112333445544322 2456666 8888888765 4789999999
No 304
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=23.20 E-value=1.9e+02 Score=28.15 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=52.4
Q ss_pred EecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHH-HHhcccCeEEEecCC
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLE-ALEQGLGGIVLKVED 192 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~-~LE~G~DGVvl~~~d 192 (270)
.-.+++-+++.....+...++|-... .. +.|.+.+.+...+..|++..++.+.++...+ +.+.|.+-|+|+|.-
T Consensus 161 DS~dpevleaALea~a~~~plI~sat-~d--n~e~m~~lAa~y~~pVi~~~~dl~~lkelv~~a~~~GI~~IvLDPG~ 235 (446)
T 4djd_C 161 MADDPDVLKEALAGVADRKPLLYAAT-GA--NYEAMTALAKENNCPLAVYGNGLEELAELVDKIVALGHKQLVLDPGA 235 (446)
T ss_dssp ECSCHHHHHHHHGGGGGGCCEEEEEC-TT--THHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred ecCCHHHHHHHHHhhcCcCCeeEecc-hh--hHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHHHCCCCcEEECCCc
Confidence 34567777776665444445554433 22 5666766666778889999999999887776 667899999999975
No 305
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=23.16 E-value=2.8e+02 Score=22.99 Aligned_cols=72 Identities=22% Similarity=0.248 Sum_probs=41.2
Q ss_pred CceEEEe------CCCCeeec---------------hhhhhhcccCC-CceEEEEcC-CHHH----HHHHHHHHhcccCe
Q 024251 133 AENIVID------LPDWQVIP---------------AENIVASFQGS-GKTVFAISK-TPSE----AQIFLEALEQGLGG 185 (270)
Q Consensus 133 ~~~vvv~------~~DWtiIP---------------lENlIA~~q~~-~~~i~a~v~-~~~e----A~~~l~~LE~G~DG 185 (270)
++++-+. ..|-..|| .-.+|.++... +..|..... ++-. .+.+-.+++.|+||
T Consensus 32 ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~ 111 (248)
T 1geq_A 32 AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDG 111 (248)
T ss_dssp BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCE
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCE
Confidence 8888887 44555555 23344444332 233544442 3300 23444556789999
Q ss_pred EEEecCCHHHHHHHHHhhc
Q 024251 186 IVLKVEDVKAVLALKEYFD 204 (270)
Q Consensus 186 Vvl~~~d~~~v~~l~~~~~ 204 (270)
|++......+..++.+.+.
T Consensus 112 v~~~~~~~~~~~~~~~~~~ 130 (248)
T 1geq_A 112 ILVVDLPVFHAKEFTEIAR 130 (248)
T ss_dssp EEETTCCGGGHHHHHHHHH
T ss_pred EEECCCChhhHHHHHHHHH
Confidence 9998776666666655553
No 306
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=22.96 E-value=3e+02 Score=24.59 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=44.0
Q ss_pred EecChhhhhhhccccCCCceEEEeCC-----------CCeeec---hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHH
Q 024251 116 EVSTPQELQQLQPADGQAENIVIDLP-----------DWQVIP---AENIVASFQGSGKTVFA--ISKTPSEAQIFLEAL 179 (270)
Q Consensus 116 ~V~~~ed~e~~~~~~~~~~~vvv~~~-----------DWtiIP---lENlIA~~q~~~~~i~a--~v~~~~eA~~~l~~L 179 (270)
.|.+.++.+.+.. ..++.|++... +|- +| ++-|..-.+..+..||+ .+.+.+|+..++.
T Consensus 156 ~v~s~e~A~~a~~--aGad~Ivvs~hgG~~~~~~~~~~~g-~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kala-- 230 (336)
T 1ypf_A 156 NVGTPEAVRELEN--AGADATKVGIGPGKVCITKIKTGFG-TGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIR-- 230 (336)
T ss_dssp EECSHHHHHHHHH--HTCSEEEECSSCSTTCHHHHHHSCS-STTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHH--
T ss_pred CcCCHHHHHHHHH--cCCCEEEEecCCCceeecccccCcC-CchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH--
Confidence 4778887555554 35788888321 221 12 33333222233567898 8999999877664
Q ss_pred hcccCeEEEecC
Q 024251 180 EQGLGGIVLKVE 191 (270)
Q Consensus 180 E~G~DGVvl~~~ 191 (270)
.|+|+|.+-..
T Consensus 231 -lGAdaV~iGr~ 241 (336)
T 1ypf_A 231 -FGATMVMIGSL 241 (336)
T ss_dssp -TTCSEEEESGG
T ss_pred -cCCCEEEeChh
Confidence 59999998765
No 307
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=22.63 E-value=91 Score=27.63 Aligned_cols=32 Identities=9% Similarity=0.026 Sum_probs=25.3
Q ss_pred CCCcEEEEEeC---c--------hhHHHHHHHhCCcEEEEcCc
Q 024251 48 SKPKRVWIWTE---S--------KQVMTAAVERGWNTFVFLSE 79 (270)
Q Consensus 48 ~~~K~vWiw~~---~--------Ke~vT~ALEsG~d~~vv~~~ 79 (270)
.+-+.||+|+- + .+.+...++.|+|+|+.+..
T Consensus 226 ~~G~~V~vWTv~t~d~~~~~~~~~~~~~~L~~~GVDgIiTD~P 268 (292)
T 3mz2_A 226 ERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIESDRP 268 (292)
T ss_dssp HTTBCEEEECTTTGGGSSSHHHHHHHHHHHHHTTCCEEEESCH
T ss_pred HCCCEEEEEeCCCcchhhhccccHHHHHHHHHcCCCEEEeCCH
Confidence 46678999982 2 35888999999999998764
No 308
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=22.58 E-value=74 Score=28.02 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=37.9
Q ss_pred ceEEEeCCCCeeechhhhhhcccCC--CceEE--EEcCCHHHHHHHHHHHhcccCeEEEec---CCHH-HHHHH
Q 024251 134 ENIVIDLPDWQVIPAENIVASFQGS--GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV---EDVK-AVLAL 199 (270)
Q Consensus 134 ~~vvv~~~DWtiIPlENlIA~~q~~--~~~i~--a~v~~~~eA~~~l~~LE~G~DGVvl~~---~d~~-~v~~l 199 (270)
.++-++..+ +-+...+|+++... +..++ ..++++++|+. +++ |+|||++-+ ++++ -++++
T Consensus 157 ~~VYl~s~G--~~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~---~~~-gAd~VIVGSa~v~~~~~~~~~v 224 (240)
T 1viz_A 157 PIFYLEYSG--VLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQ---YAE-HADVIVVGNAVYEDFDRALKTV 224 (240)
T ss_dssp SEEEEECTT--SCCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHH---HHT-TCSEEEECTHHHHCHHHHHTHH
T ss_pred CEEEEeCCC--ccChHHHHHHHHHhcCCCCEEEEeccCCHHHHHH---HHh-CCCEEEEChHHHhCHHHHHHHH
Confidence 466565533 34556666665432 22343 45899999987 466 999999988 4666 45553
No 309
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=22.49 E-value=1.9e+02 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=15.5
Q ss_pred HHHHHHHHhcccCeEEEecCC
Q 024251 172 AQIFLEALEQGLGGIVLKVED 192 (270)
Q Consensus 172 A~~~l~~LE~G~DGVvl~~~d 192 (270)
.+..-..+++|+|||++.|.+
T Consensus 61 ~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 61 RRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp HHHHHHHHHTCCSEEEECCSS
T ss_pred HHHHHHHHHCCCCEEEEeccc
Confidence 344445568999999998864
No 310
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=22.32 E-value=1e+02 Score=30.03 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=31.2
Q ss_pred EEEEcCCHH-------HHHHHHHHHh--cccCeEEEecCCHHHH-HHHHHhhc
Q 024251 162 VFAISKTPS-------EAQIFLEALE--QGLGGIVLKVEDVKAV-LALKEYFD 204 (270)
Q Consensus 162 i~a~v~~~~-------eA~~~l~~LE--~G~DGVvl~~~d~~~v-~~l~~~~~ 204 (270)
+++.+.+.+ +|-.++..|. .|.|||.++..|+.++ +++++.++
T Consensus 228 ~~vlvDT~d~l~~gv~~al~~~~~l~~~~~~~gIRlDSgd~~~l~~~~r~~ld 280 (494)
T 2f7f_A 228 CVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVREQLD 280 (494)
T ss_dssp EEEECCSSCTTTTHHHHHHHHHHHHGGGSEEEEEEECSSCHHHHHHHHHHHHH
T ss_pred EEEEEccchHhhhhHHHHHHHHHHhhhhcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 889988885 3333333343 6999999999999887 66666653
No 311
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=22.27 E-value=4.3e+02 Score=23.77 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=40.3
Q ss_pred CCceEEEeCCCCeeechhhhhhcccCCCceEEEEc--C-CHHHHHHHH-HHHhcccCeEEEe-----cCCHHH-HHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAIS--K-TPSEAQIFL-EALEQGLGGIVLK-----VEDVKA-VLALKE 201 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v--~-~~~eA~~~l-~~LE~G~DGVvl~-----~~d~~~-v~~l~~ 201 (270)
.+|+|-..+.. =-++.+++.. +..|++.= + +.+|+-... ++++.|++|+++- .+||.+ +++|++
T Consensus 202 GAD~VKt~~t~---e~~~~vv~~~---~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~~~al~~ 275 (295)
T 3glc_A 202 GAQIIKTYYVE---KGFERIVAGC---PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQA 275 (295)
T ss_dssp TCSEEEEECCT---TTHHHHHHTC---SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred CCCEEEeCCCH---HHHHHHHHhC---CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHHHHHHHH
Confidence 57888886542 1256666542 34455543 2 445554444 7889999999874 457754 555665
Q ss_pred hhc
Q 024251 202 YFD 204 (270)
Q Consensus 202 ~~~ 204 (270)
++.
T Consensus 276 ivh 278 (295)
T 3glc_A 276 VVH 278 (295)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 312
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=22.22 E-value=65 Score=26.68 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=25.1
Q ss_pred HHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 174 IFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 174 ~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
++..+.|-|.||+++.+..+++++++++..
T Consensus 124 ~~~~a~~~G~~G~~~~~~~~~~i~~lr~~~ 153 (208)
T 2czd_A 124 FIEVANEIEPFGVIAPGTRPERIGYIRDRL 153 (208)
T ss_dssp HHHHHHHHCCSEEECCCSSTHHHHHHHHHS
T ss_pred HHHHHHHhCCcEEEECCCChHHHHHHHHhC
Confidence 455677899999999999999888888765
No 313
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=22.13 E-value=1.2e+02 Score=25.88 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=63.1
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc----------hhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhc
Q 024251 58 ESKQVMTAAVERGWNTFVFLSEN----------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ 127 (270)
Q Consensus 58 ~~Ke~vT~ALEsG~d~~vv~~~~----------~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~ 127 (270)
.-.+.+..+++.|+|.+=++--| .+.++++.++. ++++.+.+-+.++++.-..+
T Consensus 18 ~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~----------------~~~~~vhlmv~dp~~~i~~~ 81 (230)
T 1tqj_A 18 RLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT----------------KKTLDVHLMIVEPEKYVEDF 81 (230)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC----------------CSEEEEEEESSSGGGTHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhc----------------CCcEEEEEEccCHHHHHHHH
Confidence 34678899999999976444211 13333333321 23455566777775544444
Q ss_pred cccCCCceEEEeCCC-CeeechhhhhhcccCCCceEEEEc--CCHHHHHHHHHHHhcccCeEEEecC
Q 024251 128 PADGQAENIVIDLPD-WQVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVLKVE 191 (270)
Q Consensus 128 ~~~~~~~~vvv~~~D-WtiIPlENlIA~~q~~~~~i~a~v--~~~~eA~~~l~~LE~G~DGVvl~~~ 191 (270)
.. ..++.+.+...- ..- -++..+..+.+.+.++...+ +++.|+ ++.+..|+|-|++-+-
T Consensus 82 ~~-aGadgv~vh~e~~~~~-~~~~~~~~i~~~g~~~gv~~~p~t~~e~---~~~~~~~~D~v~~msv 143 (230)
T 1tqj_A 82 AK-AGADIISVHVEHNASP-HLHRTLCQIRELGKKAGAVLNPSTPLDF---LEYVLPVCDLILIMSV 143 (230)
T ss_dssp HH-HTCSEEEEECSTTTCT-THHHHHHHHHHTTCEEEEEECTTCCGGG---GTTTGGGCSEEEEESS
T ss_pred HH-cCCCEEEECcccccch-hHHHHHHHHHHcCCcEEEEEeCCCcHHH---HHHHHhcCCEEEEEEe
Confidence 33 346777775440 111 23456666666666777777 566554 3444568997755443
No 314
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=21.47 E-value=2.6e+02 Score=24.61 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCceEEEeCCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecC-CHHHHH
Q 024251 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVL 197 (270)
Q Consensus 131 ~~~~~vvv~~~DWtiIPlENlIA~~q--~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~-d~~~v~ 197 (270)
.+.+.++++..-+..=-+ .++..+. .....||... ...+.....++++.|+++.+.+|- +++++.
T Consensus 48 ~~~dlvllD~~mp~~~G~-~~~~~lr~~~~~~pii~lt-~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~ 115 (394)
T 3eq2_A 48 EQPDLVICDLRMPQIDGL-ELIRRIRQTASETPIIVLS-GAGVMSDAVEALRLGAADYLIKPLEDLAVLE 115 (394)
T ss_dssp SCCSEEEECCCSSSSCTH-HHHHHHHHTTCCCCEEEC----CHHHHHHHHHHHTCSEECCSSCSCTHHHH
T ss_pred CCCCEEEEcCCCCCCCHH-HHHHHHHhhCCCCcEEEEE-cCCCHHHHHHHHhcChhhEEECCCChHHHHH
Confidence 346888885442221111 2233222 2234555443 344566778999999999999996 566543
No 315
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=21.44 E-value=1.7e+02 Score=24.99 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=39.3
Q ss_pred CCceEEEeCCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHHHH
Q 024251 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (270)
Q Consensus 132 ~~~~vvv~~~DWtiIPlENlIA~~q~----~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v~~ 198 (270)
..+.+|++..-+..=-+ .++..+.. ....|+..... .+...+..+++.|+++.+.+|-++.++..
T Consensus 63 ~~dlvl~D~~mp~~~G~-~~~~~l~~~~~~~~~~ii~~s~~-~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~ 131 (358)
T 3bre_A 63 KPTVILQDLVMPGVDGL-TLLAAYRGNPATRDIPIIVLSTK-EEPTVKSAAFAAGANDYLVKLPDAIELVA 131 (358)
T ss_dssp CCSEEEEESBCSSSBHH-HHHHHHTTSTTTTTSCEEEEESS-CCHHHHHHHHHTTCSEEEESCCCHHHHHH
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHhcCcccCCCcEEEEeCC-CCHHHHHHHHhcChheEeeccCCHHHHHH
Confidence 46788885543322112 23444432 23455554433 23456677889999999999999887544
No 316
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=21.10 E-value=87 Score=26.87 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=25.0
Q ss_pred HHHHHHHhcccCeEEEecCCHHHHHHHHHhh
Q 024251 173 QIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (270)
Q Consensus 173 ~~~l~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (270)
+++--+.|.|.||++.....+.+++++++..
T Consensus 141 ~~a~~a~~~G~~GvV~~at~~~e~~~ir~~~ 171 (228)
T 3m47_A 141 EIARMGVDLGVKNYVGPSTRPERLSRLREII 171 (228)
T ss_dssp HHHHHHHHTTCCEEECCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEECCCChHHHHHHHHhc
Confidence 4455667899999999988888888888765
No 317
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=21.05 E-value=73 Score=31.49 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=48.9
Q ss_pred CCceEEEeCC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHH
Q 024251 132 QAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 132 ~~~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
..|+|.+.|- -=.+.-+.+++.+.+ .+..|++.+.+++--+-+-++++. +|||++.+.|.+
T Consensus 221 ~vD~Ia~SFVr~a~Dv~~~r~~l~~~~-~~~~iiaKIE~~eav~nldeIl~~-sDgimVaRGDLg 283 (511)
T 3gg8_A 221 GCNFIAASFVQSADDVRYIRGLLGPRG-RHIRIIPKIENVEGLVNFDEILAE-ADGIMIARGDLG 283 (511)
T ss_dssp TCCEEEETTCCSHHHHHHHHHHHTGGG-TTCEEEEEECSHHHHHTHHHHHHH-CSCEEEEHHHHH
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHhHHHHHHh-CCeEEEecchhc
Confidence 4789998774 234666777887765 367999999999999999999998 699999988753
No 318
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=20.95 E-value=1.3e+02 Score=24.70 Aligned_cols=29 Identities=10% Similarity=0.286 Sum_probs=19.9
Q ss_pred CHHHH-HHHHHHHhcccCeEEEecCCHHHH
Q 024251 168 TPSEA-QIFLEALEQGLGGIVLKVEDVKAV 196 (270)
Q Consensus 168 ~~~eA-~~~l~~LE~G~DGVvl~~~d~~~v 196 (270)
++++. +.+-..+++|+|||++.+.+....
T Consensus 46 ~~~~~~~~~~~l~~~~vdgiii~~~~~~~~ 75 (303)
T 3d02_A 46 DAPQQVKIIEDLIARKVDAITIVPNDANVL 75 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 44443 344455689999999998877654
No 319
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.93 E-value=69 Score=28.43 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred chhhhhhcccCCCceEEE---------------EcCCHHHHHHHHHHHhc-ccCeEEEecCCHHHHHHHHHhhcccc
Q 024251 147 PAENIVASFQGSGKTVFA---------------ISKTPSEAQIFLEALEQ-GLGGIVLKVEDVKAVLALKEYFDGRN 207 (270)
Q Consensus 147 PlENlIA~~q~~~~~i~a---------------~v~~~~eA~~~l~~LE~-G~DGVvl~~~d~~~v~~l~~~~~~~~ 207 (270)
|+.++++.++..+-++.. .++|+++. +-..++. |+|||. ||.|. .|.+++...+
T Consensus 206 ~~~~~v~~~~~~g~~v~~nTlw~~~~~g~~d~~a~~d~~~~--~~~l~~~~Gvd~I~--TD~P~---~l~~yL~~~~ 275 (278)
T 3i10_A 206 PLPPKIKQLLFKKSLIWYNTLWGSLAGNHDDNLALTDPEKS--YGYLIEQLGARILQ--TDQPA---YLLDYLRKKG 275 (278)
T ss_dssp SSHHHHHHHHTTTSEEEEECSSGGGBTTCCHHHHHHCHHHH--HHHHHHTTCEEEEE--ESCHH---HHHHHHHHHT
T ss_pred chHHHHHHHHHCCCEEEEEecccccccCccchhhccChHHH--HHHHHhcCCCCEEE--eCCHH---HHHHHHhhcc
No 320
>3oyz_A Malate synthase; TIM barrel, transferase; HET: ACO; 1.95A {Haloferax volcanii} PDB: 3oyx_A* 3pug_A
Probab=20.84 E-value=1.3e+02 Score=29.27 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=48.4
Q ss_pred CCceEEEeCCCCe-----eechhhhhhcccCC----CceEEEEc----CCHH----HHHHHHHHHh------cccCeEEE
Q 024251 132 QAENIVIDLPDWQ-----VIPAENIVASFQGS----GKTVFAIS----KTPS----EAQIFLEALE------QGLGGIVL 188 (270)
Q Consensus 132 ~~~~vvv~~~DWt-----iIPlENlIA~~q~~----~~~i~a~v----~~~~----eA~~~l~~LE------~G~DGVvl 188 (270)
.+|.||++..|-- ----+|+++.++.. +.+++..+ +.+. -.+-+..++. .|+|||+|
T Consensus 42 gADaVIlDLEDAVap~~K~~AR~~v~~~L~~~~~~~~~~v~VRI~~~RN~~~T~~~~~~DL~al~~~~~~a~~~~dgIvL 121 (433)
T 3oyz_A 42 APDVWVPDNEDATAPSMRDEGAENIVEVISEQGAEFPGEIHPRMVWHRDSPETRYQGFQHMLDITDPERGAVEHIHGFVI 121 (433)
T ss_dssp SCSEEEEESSTTSCGGGHHHHHHHHHHHHHHHGGGCSSEECCBCCCCTTCHHHHHHHHHHHHHHTCGGGSCGGGCCEEEE
T ss_pred CCCEEEEeCCCCCCcccHHHHHHHHHHHHHhhccccCCcEEEEECCCCCCCCChhccHHHHHHHhccccccccCCCEEEe
Confidence 6899999888742 11135666655321 34588888 6543 2334555555 78999999
Q ss_pred e-cCCHHHHHHHHHhhcc
Q 024251 189 K-VEDVKAVLALKEYFDG 205 (270)
Q Consensus 189 ~-~~d~~~v~~l~~~~~~ 205 (270)
+ .+++.++..+..++..
T Consensus 122 PKvesa~dV~~l~~~L~~ 139 (433)
T 3oyz_A 122 PEVGGIDDWKKADEFFTI 139 (433)
T ss_dssp CSCCSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 7 5678999888777643
No 321
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=20.84 E-value=1.2e+02 Score=25.23 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcccCeEEEecCCHH
Q 024251 171 EAQIFLEALEQGLGGIVLKVEDVK 194 (270)
Q Consensus 171 eA~~~l~~LE~G~DGVvl~~~d~~ 194 (270)
+.+..-..+++++|||++.+.+..
T Consensus 60 ~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 60 TQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp HHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHHHHHHHHhCCCcEEEEecCCCC
Confidence 344444556899999999886543
No 322
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=20.60 E-value=1.1e+02 Score=29.02 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=33.0
Q ss_pred CCCceEEEeCC-CCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHHhcccCeEEE
Q 024251 131 GQAENIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (270)
Q Consensus 131 ~~~~~vvv~~~-DWtiIPlENlIA~~q~~--~~~i~a-~v~~~~eA~~~l~~LE~G~DGVvl 188 (270)
...+.+.++.. +..-.++ ++|.++... +..|++ .+.+.++|+.+ .+.|+|+|.+
T Consensus 266 aG~d~v~i~~~~G~~~~~~-~~i~~i~~~~~~~pvi~~~v~t~~~a~~l---~~aGad~I~v 323 (514)
T 1jcn_A 266 AGVDVIVLDSSQGNSVYQI-AMVHYIKQKYPHLQVIGGNVVTAAQAKNL---IDAGVDGLRV 323 (514)
T ss_dssp TTCSEEEECCSCCCSHHHH-HHHHHHHHHCTTCEEEEEEECSHHHHHHH---HHHTCSEEEE
T ss_pred cCCCEEEeeccCCcchhHH-HHHHHHHHhCCCCceEecccchHHHHHHH---HHcCCCEEEE
Confidence 45788888554 2221222 233333322 456665 68899888765 4679999988
No 323
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=20.37 E-value=1.4e+02 Score=27.30 Aligned_cols=129 Identities=17% Similarity=0.216 Sum_probs=67.9
Q ss_pred HHHHHHHhCCcEEEEcC-cchhhhhhccceee-ee-eeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCceEEE
Q 024251 62 VMTAAVERGWNTFVFLS-ENQQLAIDWSTIAL-LD-PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (270)
Q Consensus 62 ~vT~ALEsG~d~~vv~~-~~~e~a~~l~~i~~-i~-~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~~vvv 138 (270)
.+..|+..|..+|++|. ++.+..++...+-. +. .+. ..|... +..+.+.+.|.+|+-+..+.......|.+.|
T Consensus 127 Ai~ra~~~G~~~ImvPmV~s~~E~~~a~~~v~~~~~~~r-~~G~~~---~~~~~vg~mIEtp~av~~~d~Ia~~vD~~si 202 (324)
T 2xz9_A 127 AILRASAYGNVQIMYPMISSVEEVRKANSILEEVKAELD-REGVKY---DKEIKVGIMVEIPSAAVTADILAKEVDFFSI 202 (324)
T ss_dssp HHHHHGGGSCEEEEECSCCCHHHHHHHHHHHHHHHHHHH-HHTCCC---CTTCEEEEEECSHHHHHTHHHHTTTCSEEEE
T ss_pred HHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHHHHH-hcCCCC---CCCcEEEEEECcHHHHHHHHHHHHhCcEEEE
Confidence 67778888999999985 23333221221100 00 000 001101 2234455667887776665554445787777
Q ss_pred eCCCCee-----------e--------c-----hhhhhhcccCCCceEEEE---c-CCHHHHHHHHHHHhcccCeEEEec
Q 024251 139 DLPDWQV-----------I--------P-----AENIVASFQGSGKTVFAI---S-KTPSEAQIFLEALEQGLGGIVLKV 190 (270)
Q Consensus 139 ~~~DWti-----------I--------P-----lENlIA~~q~~~~~i~a~---v-~~~~eA~~~l~~LE~G~DGVvl~~ 190 (270)
-..|=+. + | ++.++.+....+ +-+.. . .|+++++. .++.|.|++.+.|
T Consensus 203 GtnDLtq~~lg~dR~~~~~~~~~~~~~p~v~~ai~~vv~aar~aG-~~vgvcge~~~dp~~~~~---l~~lG~~~~si~p 278 (324)
T 2xz9_A 203 GTNDLTQYTLAVDRMNEHVKEYYQPFHPAILRLVKMVIDAAHKEG-KFAAMCGEMAGDPLAAVI---LLGLGLDEFSMSA 278 (324)
T ss_dssp CHHHHHHHHTTCCTTCGGGGGGCCTTCHHHHHHHHHHHHHHHHTT-CEEEECSGGGGCHHHHHH---HHHHTCCEEEECG
T ss_pred CHHHHHHHHhCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHC-CceeecCccCCCHHHHHH---HHHCCCCEEEECh
Confidence 4433331 1 2 233444443333 33444 2 36655544 4678999999999
Q ss_pred CCHHHHHH
Q 024251 191 EDVKAVLA 198 (270)
Q Consensus 191 ~d~~~v~~ 198 (270)
+....++.
T Consensus 279 ~~i~~~~~ 286 (324)
T 2xz9_A 279 TSIPEIKN 286 (324)
T ss_dssp GGHHHHHH
T ss_pred hHHHHHHH
Confidence 96654443
No 324
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=20.35 E-value=1.4e+02 Score=28.16 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=63.9
Q ss_pred EeC-chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeEEEEEEecChhhhhhhccccCCCc
Q 024251 56 WTE-SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (270)
Q Consensus 56 w~~-~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~v~V~~~ed~e~~~~~~~~~~ 134 (270)
|.+ -+.+...-.+.|.+-++++.+ .+.++++..- -|. ..++...++++.++++-. .+++
T Consensus 135 ~g~~g~~la~~L~~~~~~vvvid~~-~~~~~~~~~~----------------~~~-~~i~Gd~~~~~~L~~a~i--~~a~ 194 (565)
T 4gx0_A 135 IDPITRTLIRKLESRNHLFVVVTDN-YDQALHLEEQ----------------EGF-KVVYGSPTDAHVLAGLRV--AAAR 194 (565)
T ss_dssp CCHHHHHHHHHTTTTTCCEEEEESC-HHHHHHHHHS----------------CSS-EEEESCTTCHHHHHHTTG--GGCS
T ss_pred CChHHHHHHHHHHHCCCCEEEEECC-HHHHHHHHHh----------------cCC-eEEEeCCCCHHHHHhcCc--ccCC
Confidence 543 456666656789998887764 4454433321 011 123334466666666543 3577
Q ss_pred eEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEe
Q 024251 135 NIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (270)
Q Consensus 135 ~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~ 189 (270)
.+++...|-..+=.-. .|.-.+ ..++++.+.+.+.++.+. +.|+|-|+..
T Consensus 195 ~vi~t~~D~~n~~~~~-~ar~~~-~~~iiar~~~~~~~~~l~---~~Gad~vi~p 244 (565)
T 4gx0_A 195 SIIANLSDPDNANLCL-TVRSLC-QTPIIAVVKEPVHGELLR---LAGANQVVPL 244 (565)
T ss_dssp EEEECSCHHHHHHHHH-HHHTTC-CCCEEEECSSGGGHHHHH---HHTCSEEECH
T ss_pred EEEEeCCcHHHHHHHH-HHHHhc-CceEEEEECCHHHHHHHH---HcCCCEEECh
Confidence 8888555643321111 122223 678999999999988763 6799977654
Done!