BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024252
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/269 (74%), Positives = 227/269 (84%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAF
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G ELVLTDPA+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGK
Sbjct: 113 GVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGK 172
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID VS KYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 173 IDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
VL+V+L+DE VQ+SS+E+I+ A+ LALKEGLLVGISSG +RPENAGKL V
Sbjct: 233 SVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFV 292
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
+FPSFGERYLS+VLF++ +KEAE+M FE
Sbjct: 293 AIFPSFGERYLSTVLFDATRKEAEAMTFE 321
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/269 (74%), Positives = 227/269 (84%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAF
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G ELVLTDPA+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGK
Sbjct: 113 GVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGK 172
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID VS KYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 173 IDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
VL+V+L+DE VQ+SS+E+I+ A+ LALKEGLLVGISSG +RPENAGKL V
Sbjct: 233 SVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFV 292
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
+FPSFGERYLS+VLF++ +KEAE+M FE
Sbjct: 293 AIFPSFGERYLSTVLFDATRKEAEAMTFE 321
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 412 bits (1059), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/269 (74%), Positives = 227/269 (84%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAF
Sbjct: 51 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 110
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G ELVLTDPA+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGK
Sbjct: 111 GVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGK 170
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID VS KYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 171 IDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 230
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
VL+V+L+DE VQ+SS+E+I+ A+ LALKEGLLVGISSG +RPENAGKL V
Sbjct: 231 SVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFV 290
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
+FPSFGERYLS+VLF++ +KEAE+M FE
Sbjct: 291 AIFPSFGERYLSTVLFDATRKEAEAMTFE 319
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/266 (68%), Positives = 215/266 (80%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ DAE+KG I PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AF
Sbjct: 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAF 220
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPA+GM GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK
Sbjct: 221 GAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGK 280
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V+ +++KE NP+ ++ GVEP ES +LSGGKPGPHKIQGIGAGFIP
Sbjct: 281 VDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIP 340
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
LD ++DE + ISSEEAIETAK LALKEGL+VGISSG KRPENAGKLI
Sbjct: 341 KNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIA 400
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
VVFPSFGERYLS+ LF+S+++E E M
Sbjct: 401 VVFPSFGERYLSTPLFQSIREEVEKM 426
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 330 bits (847), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 153/266 (57%), Positives = 202/266 (75%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEK LI PG++ LIEPTSGN GI +AFMAA KGY++++TMP+ SLERR+ + AF
Sbjct: 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAF 132
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LTDPA+GM G V+KA E+ + TPN+++LQQF NPAN ++H+ETTGPEIW+ T G+
Sbjct: 133 GAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQ 192
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V +YLK NP +K+YGVEP ES VL+GGKPGPH I G G GF P
Sbjct: 193 VDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKP 252
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
+LD++++++ +++SSE+A+ A++LALKEGL+VGISSG + PEN GKLIV
Sbjct: 253 DILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIV 312
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
V PSFGERYLSSVLF+ +++EAE+M
Sbjct: 313 TVHPSFGERYLSSVLFQELRQEAENM 338
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 330 bits (846), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 153/266 (57%), Positives = 202/266 (75%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEK LI PG++ LIEPTSGN GI +AFMAA KGY++++TMP+ SLERR+ + AF
Sbjct: 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAF 132
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LTDPA+GM G V+KA E+ + TPN+++LQQF NPAN ++H+ETTGPEIW+ T G+
Sbjct: 133 GAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQ 192
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V +YLK NP +K+YGVEP ES VL+GGKPGPH I G G GF P
Sbjct: 193 VDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKP 252
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
+LD++++++ +++SSE+A+ A++LALKEGL+VGISSG + PEN GKLIV
Sbjct: 253 DILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIV 312
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
V PSFGERYLSSVLF+ +++EAE+M
Sbjct: 313 TVHPSFGERYLSSVLFQELRQEAENM 338
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 283 bits (725), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 139/259 (53%), Positives = 179/259 (69%), Gaps = 1/259 (0%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ AE+ GLI+P +++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+
Sbjct: 54 MLQAAEQAGLIKP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAY 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LT A GM GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK
Sbjct: 113 GAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGK 172
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D +V+ + +KE P + VEP S VLSGG+ GPH IQGIGAGF+P
Sbjct: 173 VDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
VLD +L+DE + + +E+A+ A+ LA +EGLLVGISSG +RPENAGKLIV
Sbjct: 233 PVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIV 292
Query: 241 VVFPSFGERYLSSVLFESV 259
VV P FGERYLS+ LF V
Sbjct: 293 VVLPDFGERYLSTPLFADV 311
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 283 bits (725), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 139/259 (53%), Positives = 179/259 (69%), Gaps = 1/259 (0%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ AE+ GLI+P +++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+
Sbjct: 54 MLQAAEQAGLIKP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAY 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LT A GM GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK
Sbjct: 113 GAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGK 172
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D +V+ + +KE P + VEP S VLSGG+ GPH IQGIGAGF+P
Sbjct: 173 VDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
VLD +L+DE + + +E+A+ A+ LA +EGLLVGISSG +RPENAGKLIV
Sbjct: 233 PVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIV 292
Query: 241 VVFPSFGERYLSSVLFESV 259
VV P FGERYLS+ LF V
Sbjct: 293 VVLPDFGERYLSTPLFADV 311
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/261 (52%), Positives = 181/261 (69%), Gaps = 1/261 (0%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE+ GLI+P +++++EPTSGNTGI LA ++AA+GY+ ++TMP +MS+ERRM+L A+
Sbjct: 55 MIDAAEKAGLIKP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAY 113
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT A GM GA+ KAEE+ ++ QQFENPANP +H TT E+W+ T GK
Sbjct: 114 GAELVLTPGAEGMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGK 173
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D VS + +K+ P + VEP S VLSGG+ GPH IQGIGAGF+P
Sbjct: 174 VDIFVSGVGTGGTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVP 233
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
VLD+ L+DE + + +++A+E A+ +A +EGLLVGISSG RPENAGKLIV
Sbjct: 234 PVLDLALVDEVITVGNDDALELARRMATEEGLLVGISSGAAVWAARELAHRPENAGKLIV 293
Query: 241 VVFPSFGERYLSSVLFESVKK 261
VV P FGERYLS+VLF + +
Sbjct: 294 VVLPDFGERYLSTVLFADLSE 314
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 135/261 (51%), Positives = 180/261 (68%), Gaps = 1/261 (0%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE+ GLI+P +++++EPTSGNTGI LA ++AA+GY+ ++TMP +MS+ERRM+L A+
Sbjct: 55 MIDAAEKAGLIKP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAY 113
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT A GM GA+ KAEE+ ++ QQFENPANP +H TT E+W+ T GK
Sbjct: 114 GAELVLTPGAEGMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGK 173
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D VS + +K+ P + VEP S VLSGG+ GPH IQGIGAGF+P
Sbjct: 174 VDIFVSGVGTGGTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVP 233
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
VLD+ L+DE + + +++A+E A+ +A +EGLL GISSG RPENAGKLIV
Sbjct: 234 PVLDLALVDEVITVGNDDALELARRMATEEGLLFGISSGAAVWAARELAHRPENAGKLIV 293
Query: 241 VVFPSFGERYLSSVLFESVKK 261
VV P FGERYLS+VLF + +
Sbjct: 294 VVLPDFGERYLSTVLFADLSE 314
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/273 (50%), Positives = 182/273 (66%), Gaps = 10/273 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++G+++PG L+EPT+GNTGI LA++AAA+GY+L +TMP +MS+ERR +L A
Sbjct: 48 MIWDAEKRGVLKPGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKAL 106
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGG 119
GA LVLT+ A+GMKGA+QKAEEI P Y +LQQF NPANP+IH +TTGPEIW+ T G
Sbjct: 107 GANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDG 166
Query: 120 KIDALVSXXXXXXXXXXXXKYLKEHNPEIKL--YGVEPVESAVLSGG------KPGPHKI 171
++D +S +Y+K + L VEP +S V++ KPGPHKI
Sbjct: 167 QVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKI 226
Query: 172 QGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKR 231
QGIGAGFIPG LD+ L+D+ V I++EEAI TA+ L +EG+L GISSG +
Sbjct: 227 QGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQED 286
Query: 232 PENAGKLIVVVFPSFGERYLSSVLFESVKKEAE 264
K IVV+ PS GERYLS+ LF + E E
Sbjct: 287 ESFTNKNIVVILPSSGERYLSTALFADLFTEKE 319
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/273 (50%), Positives = 182/273 (66%), Gaps = 10/273 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++G+++PG L+EPT+GNTGI LA++AAA+GY+L +TMP +MS+ERR +L A
Sbjct: 48 MIWDAEKRGVLKPGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKAL 106
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGG 119
GA LVLT+ A+GMKGA+QKAEEI P Y +LQQF NPANP+IH +TTGPEIW+ T G
Sbjct: 107 GANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDG 166
Query: 120 KIDALVSXXXXXXXXXXXXKYLKEHNPEIKL--YGVEPVESAVLSGG------KPGPHKI 171
++D +S +Y+K + L VEP +S V++ KPGPHKI
Sbjct: 167 QVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKI 226
Query: 172 QGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKR 231
QGIGAGFIPG LD+ L+D+ V I++EEAI TA+ L +EG+L GISSG +
Sbjct: 227 QGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQED 286
Query: 232 PENAGKLIVVVFPSFGERYLSSVLFESVKKEAE 264
K IVV+ PS GERYLS+ LF + E E
Sbjct: 287 ESFTNKNIVVILPSSGERYLSTALFADLFTEKE 319
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 169/262 (64%)
Query: 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64
AE++G + PG+S+++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L FGAE+
Sbjct: 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEV 121
Query: 65 VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDAL 124
+LT A GMKGAV A++I PN+ + QF N IH ETTGPEIW+ T +D
Sbjct: 122 ILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCF 181
Query: 125 VSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLD 184
++ + LK+ ++ VEP ES VLSGGKPGPHKIQGIG GF+P VLD
Sbjct: 182 IAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLD 241
Query: 185 VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFP 244
+L+DE + ++ ++AIETA L +G+ G S G +RPE GK IV V P
Sbjct: 242 RSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTVIP 301
Query: 245 SFGERYLSSVLFESVKKEAESM 266
SFGERYLS+ L+ SV+ E S+
Sbjct: 302 SFGERYLSTTLYRSVRDEVSSL 323
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 249 bits (636), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/262 (47%), Positives = 168/262 (64%)
Query: 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64
AE++G + PG+SV++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L FGAE+
Sbjct: 83 AEKEGKLIPGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEV 142
Query: 65 VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDAL 124
+LT A GMKGAV A++I PN+ + QF N IH ETTGPEIW+ T +D
Sbjct: 143 ILTPAALGMKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCF 202
Query: 125 VSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLD 184
++ + LK+ ++ VEP+ES VLSGGKPG HKIQGIG GF+P VLD
Sbjct: 203 IAGVGTGGTLTGVARALKKMGSHARIVAVEPMESPVLSGGKPGAHKIQGIGPGFVPDVLD 262
Query: 185 VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFP 244
+L+DE ++ ++AIETA L +G+ G S G +RPE GK IV + P
Sbjct: 263 RSLIDEVFCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTIIP 322
Query: 245 SFGERYLSSVLFESVKKEAESM 266
SFGERYLS+ L+ SV+ E S+
Sbjct: 323 SFGERYLSTALYRSVRDEVSSL 344
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 133/268 (49%), Positives = 177/268 (66%), Gaps = 9/268 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ AE+ G + G+ + ++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L
Sbjct: 49 MVWQAEKDGTLTKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGL 107
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGG 119
G LVLT+ A+GMKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T G
Sbjct: 108 GVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDG 167
Query: 120 KIDALVSXXXXXXXXXXXXKYLK-EHNPEIKLYGVEPVESAVLSGG------KPGPHKIQ 172
K+D +V+ + +K + +I VEPVES V+S KPGPHKIQ
Sbjct: 168 KVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQ 227
Query: 173 GIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRP 232
GIGAGFIP LD++++D + S+ A+ TA+ L +EG+L GISSG K P
Sbjct: 228 GIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLP 287
Query: 233 ENAGKLIVVVFPSFGERYLSSVLFESVK 260
E A KLIVV+ PS ERYLS+ LFE ++
Sbjct: 288 EFADKLIVVILPSASERYLSTALFEGIE 315
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 233 bits (595), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 126/257 (49%), Positives = 169/257 (65%), Gaps = 3/257 (1%)
Query: 1 MIADAEEKGLIRPGE-SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA 59
MI DAEE+G++RPG V++EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL A
Sbjct: 47 MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKA 106
Query: 60 FGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 119
FGAELVLTDP R M A ++A ++++ +++ QF+NPAN + HYETTGPE+++ G
Sbjct: 107 FGAELVLTDPERRMLAAREEALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEG 165
Query: 120 KIDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
+IDA V +YLKE P +K+ VEP S VLSGGK G H QG+G GFI
Sbjct: 166 RIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFI 225
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLI 239
P LD++LLD +Q+ E+A A+ LA +EGL +G+SSG R GK +
Sbjct: 226 PENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGPGKRV 284
Query: 240 VVVFPSFGERYLSSVLF 256
+ P G +YLS+ L+
Sbjct: 285 ACISPDGGWKYLSTPLY 301
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/257 (49%), Positives = 175/257 (68%), Gaps = 3/257 (1%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE+ G ++PG+++ +EPTSGNTGIGLA +AAAKGY+ ++ MP +MSLERR +L A+
Sbjct: 52 MIEAAEKAGKLKPGDTI-VEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAY 110
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT A+GM+GA+ KAEE+ + ++ QQF+N ANP+IH TTG EI + G +
Sbjct: 111 GAELVLTPGAQGMRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQ 169
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DA V+ K L+E P IK+Y VEP +S VLSGGKPGPHKIQGIGAGF+P
Sbjct: 170 LDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVP 229
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
+LD ++ D + +++EEA A+ A +EG+L GISSG K GK ++
Sbjct: 230 DILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKGKKVL 288
Query: 241 VVFPSFGERYLSSVLFE 257
+ PS GERYLS+ L++
Sbjct: 289 AIIPSNGERYLSTPLYQ 305
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 160/253 (63%), Gaps = 6/253 (2%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++GL++ G ++EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL
Sbjct: 54 MILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML 110
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT GMKGAV+KA EI +T +++L QFENP N H TTGPEI K +
Sbjct: 111 GAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQ 169
Query: 121 IDALVSXXXXXXXXXXXXKYLKEH-NPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
IDA V+ + LK +K+ VEP +S VLSGG+PG H IQGIGAGF+
Sbjct: 170 IDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFV 229
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLI 239
P +LD +++DE + + EEA E A+ LA KEGLLVGISSG ++ + +
Sbjct: 230 PKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-V 288
Query: 240 VVVFPSFGERYLS 252
V V P ERYLS
Sbjct: 289 VTVAPDHAERYLS 301
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 160/253 (63%), Gaps = 6/253 (2%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++GL++ G ++EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL
Sbjct: 42 MILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML 98
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT GMKGAV+KA EI +T +++L QFENP N H TTGPEI K +
Sbjct: 99 GAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQ 157
Query: 121 IDALVSXXXXXXXXXXXXKYLKEH-NPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
IDA V+ + LK +K+ VEP +S VLSGG+PG H IQGIGAGF+
Sbjct: 158 IDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFV 217
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLI 239
P +LD +++DE + + EEA E A+ LA KEGLLVGISSG ++ + +
Sbjct: 218 PKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-V 276
Query: 240 VVVFPSFGERYLS 252
V V P ERYLS
Sbjct: 277 VTVAPDHAERYLS 289
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 158/258 (61%), Gaps = 3/258 (1%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
++ A + G ++PG + IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AF
Sbjct: 64 IVYQAIKDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAF 122
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGG 119
GAEL+LT+ +GM GA+++ ++ + P Y V QF NP N H+ T EIW+ T G
Sbjct: 123 GAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDG 181
Query: 120 KIDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
++D +VS + LKE IK+ VEP ESAVL G GPH IQGIGAGFI
Sbjct: 182 EVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFI 241
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLI 239
P + +DE + I +++A + A+ + +G++ G+SSG ++PEN GK I
Sbjct: 242 PDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTI 301
Query: 240 VVVFPSFGERYLSSVLFE 257
V++ PS GERYLS+ L++
Sbjct: 302 VIIVPSCGERYLSTDLYK 319
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 158/258 (61%), Gaps = 3/258 (1%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
++ A + G ++PG + IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AF
Sbjct: 65 IVYQAIKDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAF 123
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGG 119
GAEL+LT+ +GM GA+++ ++ + P Y V QF NP N H+ T EIW+ T G
Sbjct: 124 GAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDG 182
Query: 120 KIDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
++D +VS + LKE IK+ VEP ESAVL G GPH IQGIGAGFI
Sbjct: 183 EVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFI 242
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLI 239
P + +DE + I +++A + A+ + +G++ G+SSG ++PEN GK I
Sbjct: 243 PDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTI 302
Query: 240 VVVFPSFGERYLSSVLFE 257
V++ PS GERYLS+ L++
Sbjct: 303 VIIVPSCGERYLSTDLYK 320
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 152/256 (59%), Gaps = 11/256 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+
Sbjct: 48 MIVEAEKRGRIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAY 106
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+L +GM+GA A E+ ++ +L QF NP NPK HY TTGPEIW+ TGG+
Sbjct: 107 GAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPKAHYTTTGPEIWQQTGGR 165
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I VS ++++E + + + G++P E + + G + P + ++P
Sbjct: 166 ITHFVSSMGTTGTITGVSEFMREQSKPVTIVGLQPEEGSSIPGIRRWPTE-------YLP 218
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
G+ + +L+DE + I +A T + LA++EG+ G+SSG K N ++V
Sbjct: 219 GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVV 276
Query: 241 VVFPSFGERYLSSVLF 256
+ G+RYLS+ +F
Sbjct: 277 AIICDRGDRYLSTGVF 292
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 151/256 (58%), Gaps = 11/256 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+
Sbjct: 48 MIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAY 106
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+L +GM+GA A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+
Sbjct: 107 GAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGR 165
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I VS ++++E + + + G++P E + + G + P + ++P
Sbjct: 166 ITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTE-------YLP 218
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
G+ + +L+DE + I +A T + LA++EG+ G+SSG K N ++V
Sbjct: 219 GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVV 276
Query: 241 VVFPSFGERYLSSVLF 256
+ G+RYLS+ +F
Sbjct: 277 AIICDRGDRYLSTGVF 292
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 181 bits (458), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 150/256 (58%), Gaps = 11/256 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+
Sbjct: 48 MIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAY 106
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+L +GM+GA A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+
Sbjct: 107 GAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGR 165
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I VS ++++E + + + G++P E + + G + P + ++P
Sbjct: 166 ITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTE-------YLP 218
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
G+ + +L+DE + I +A T + LA++EG+ G+SSG N ++V
Sbjct: 219 GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVV 276
Query: 241 VVFPSFGERYLSSVLF 256
+ G+RYLS+ +F
Sbjct: 277 AIICDRGDRYLSTGVF 292
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 148/256 (57%), Gaps = 11/256 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+
Sbjct: 48 MIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAY 106
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+L +GM+GA A + ++ +L QF NP NP HY TTGPEIW+ T G+
Sbjct: 107 GAELILVTKEQGMEGARDLALAMSERGEGK-LLDQFNNPDNPYAHYTTTGPEIWRQTSGR 165
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I VS ++L+E + + G++P E + + G + P A ++P
Sbjct: 166 ITHFVSSMGTTGTITGVSRFLREQEKPVTIVGLQPEEGSSIPGIRRWP-------AEYMP 218
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
G+ + +L+DE + I +A T + LA++EG+ G+SSG + G ++V
Sbjct: 219 GIFNASLVDEVLDIHQNDAENTMRELAVREGIFCGVSSGGAVAGALRVAR--ATPGAIVV 276
Query: 241 VVFPSFGERYLSSVLF 256
+ G+RYLS+ +F
Sbjct: 277 AIICDRGDRYLSTGVF 292
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 146/264 (55%), Gaps = 12/264 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE G ++PG+++ IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A
Sbjct: 83 MIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRAL 141
Query: 61 GAELVLTDPARGM----KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 116
GAE+V T P + V A ++++ PNS++L Q+ N +NP HY+TT EI +
Sbjct: 142 GAEIVRT-PTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQ 200
Query: 117 TGGKIDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEP-----VESAVLSGGKPGPHKI 171
GK+D LV+ + LKE P ++ GV+P E L+ + +++
Sbjct: 201 CDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEV 260
Query: 172 QGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKR 231
+GIG FIP VLD ++D+ + + EEA A++L +EGLL G S+G +
Sbjct: 261 EGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQE 320
Query: 232 PENAGKLIVVVFPSFGERYLSSVL 255
+ G+ VV+ P Y++ L
Sbjct: 321 LQE-GQRCVVILPDSVRNYMTKFL 343
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 147/266 (55%), Gaps = 12/266 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE G ++PG+++ IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A
Sbjct: 148 MIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRAL 206
Query: 61 GAELVLTDPARGM----KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 116
GAE+V T P + V A ++++ PNS++L Q+ N +NP HY+TT EI +
Sbjct: 207 GAEIVRT-PTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQ 265
Query: 117 TGGKIDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEP-----VESAVLSGGKPGPHKI 171
GK+D LV+ + LKE P ++ GV+P E L+ + +++
Sbjct: 266 CDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEV 325
Query: 172 QGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKR 231
+GIG FIP VLD ++D+ + + EEA A++L +EGLL G S+G +
Sbjct: 326 EGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQE 385
Query: 232 PENAGKLIVVVFPSFGERYLSSVLFE 257
+ G+ VV+ P Y++ L +
Sbjct: 386 LQE-GQRCVVILPDSVRNYMTKFLSD 410
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 133/269 (49%), Gaps = 11/269 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE GL+RPG ++L EPTSGNTGI LA A KGYRLI MP + S+ERR +L +
Sbjct: 61 MIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELY 119
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GA+++ + G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +
Sbjct: 120 GAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PE 178
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I V+ ++L+EH +K+ EP G + ++ + GF+P
Sbjct: 179 ITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVP 231
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKL-- 238
+ D +L + + +A+ + L EG+ GIS+G AG+
Sbjct: 232 ELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERAD 291
Query: 239 IVVVFPSFGERYLSSVLFESVKKEAESMV 267
I +V G +YLS+ + +AE+ +
Sbjct: 292 IALVVADAGWKYLSTGAYAGSLDDAETAL 320
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 133/269 (49%), Gaps = 11/269 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE GL+RPG ++L EPTSGNTGI LA A KGYRLI MP + S+ERR +L +
Sbjct: 60 MIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELY 118
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GA+++ + G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +
Sbjct: 119 GAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PE 177
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I V+ ++L+EH +K+ EP G + ++ + GF+P
Sbjct: 178 ITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVP 230
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKL-- 238
+ D +L + + +A+ + L EG+ GIS+G AG+
Sbjct: 231 ELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERAD 290
Query: 239 IVVVFPSFGERYLSSVLFESVKKEAESMV 267
I +V G +YLS+ + +AE+ +
Sbjct: 291 IALVVADAGWKYLSTGAYAGSLDDAETAL 319
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 139/267 (52%), Gaps = 12/267 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ DAEE+GL++PG ++ IEPTSGNTGIGLA A KGY+ II MP MS E+ L
Sbjct: 100 MVQDAEEQGLLKPGYTI-IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTL 158
Query: 61 GAELVLTDPARGM----KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 116
GA+++ T P +G + A++++ +TPNS VL Q+ N NP HY+ T EI
Sbjct: 159 GAKIIRT-PTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQ 217
Query: 117 TGGKIDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVES-----AVLSGGKPGPHKI 171
K+D +V + +KE P ++ GV+P S A L+ +++
Sbjct: 218 LDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEV 277
Query: 172 QGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKR 231
+GIG F P V D ++D +I + ++ L +EGLL G SSG ++
Sbjct: 278 EGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARK 337
Query: 232 PENAGKLIVVVFPSFGERYLSSVLFES 258
+ G+ VV+ P Y++ + ++
Sbjct: 338 LKK-GQRCVVILPDGIRNYMTKFVSDN 363
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 131/267 (49%), Gaps = 11/267 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE GL+RPG ++L EPTSGNTGI LA A KGYRLI MP + S+ERR +L +
Sbjct: 58 MIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELY 116
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GA+++ + G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +
Sbjct: 117 GAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PE 175
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I V+ ++L+EH + + EP G + ++ + GF+P
Sbjct: 176 ITHFVAGLGTTGTLMGTGRFLREHVANVAIVAAEPRYG-------EGVYALRNMDEGFVP 228
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKL-- 238
+ D +L + + +A+ + L EG+ GIS+G AG+
Sbjct: 229 ELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERAD 288
Query: 239 IVVVFPSFGERYLSSVLFESVKKEAES 265
I +V G +YLS+ + +AE+
Sbjct: 289 IALVVADAGWKYLSTGAYAGSLDDAET 315
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 20/246 (8%)
Query: 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG 75
S++ + TS N G+ L+ +A GYR + +P + +++ GA++++ A
Sbjct: 146 SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVH 205
Query: 76 AVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIW---KGTGGKIDALVSXXXXX 131
+ + ++D +V + QF N AN + H T EI+ + G + +
Sbjct: 206 LLPRV--MKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 132 XXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 191
YL+ +P I+ V+P + + PG +++ G+L +N+LD +
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSI----PGIRRVE-------TGMLWINMLDIS 312
Query: 192 ---VQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGE 248
+++ EEA+E +A +GL++G S G + VVV P G
Sbjct: 313 YTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGF 372
Query: 249 RYLSSV 254
+YLS V
Sbjct: 373 KYLSLV 378
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 20/246 (8%)
Query: 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG 75
S++ + TS N G+ L+ +A GYR + +P + +++ GA++++ A
Sbjct: 146 SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVH 205
Query: 76 AVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIW---KGTGGKIDALVSXXXXX 131
+ + ++D +V + QF N AN + H T EI+ + G + +
Sbjct: 206 LLPRV--MKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 132 XXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 191
YL+ +P I+ V+P + + PG +++ G+L +N+LD +
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSI----PGIRRVE-------TGMLWINMLDIS 312
Query: 192 ---VQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGE 248
+++ EEA+E +A +GL++G S G + VVV P G
Sbjct: 313 YTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGF 372
Query: 249 RYLSSV 254
+YLS V
Sbjct: 373 KYLSLV 378
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68
T GN G G+A+ A G +I P + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81
++GN G+ + M+A G+++ + M A ++ L + G +V + G+ AV++
Sbjct: 165 STGNLGLSIGIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGR 222
Query: 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEI 113
+ PN + + EN + Y G +
Sbjct: 223 KAAQSDPNCFFIDD-ENSRTLFLGYAVAGQRL 253
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 6/181 (3%)
Query: 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 77
+I ++GN G+AF +A G + +I MP + + + + FG E++L A
Sbjct: 82 VITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLH--GANFDEAK 139
Query: 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXX 137
KA E+ + ++V F++P I + T +D +
Sbjct: 140 AKAIELSQQQGFTWV-PPFDHPM--VIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGV 196
Query: 138 XKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAG-FIPGVLDVNLLDETVQISS 196
+K+ P+IK+ VE +SA L H + G F GV + DET ++
Sbjct: 197 AVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQ 256
Query: 197 E 197
E
Sbjct: 257 E 257
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 77
++ +SGN G L + A +G I +P + +++ + A+GA +V +P+ + V
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENV 138
Query: 78 QK 79
K
Sbjct: 139 AK 140
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA 59
+G ++PGESVLI SG G +A ++G R+ T+ S E+R L A
Sbjct: 1662 RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVG---SAEKRAYLQA 1710
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 77
L+ +SGN G+A+ A G + ++ MP S ++ A+GAE+V D K
Sbjct: 68 LLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV--DRGVTAKNRE 125
Query: 78 QKAEEIRDKTPNSYVLQQFENP 99
+ A ++++T ++ F++P
Sbjct: 126 EVARALQEET-GYALIHPFDDP 146
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70
++ +SGN G L + A +G I +P + +++ + A+GA +V ++P+
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYSEPS 131
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81
++GN G+ + M+A G+++ + M A ++ L + G +V + G+ AV++
Sbjct: 167 STGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV--AVEEGR 224
Query: 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEI 113
+ PN + + EN + Y G +
Sbjct: 225 KAAQSDPNCFFIDD-ENSRTLFLGYSVAGQRL 255
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 77
++ +SGN G L + A +G I +P + +++ + A+GA +V +P+ + V
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENV 138
Query: 78 QK 79
K
Sbjct: 139 AK 140
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL 57
EKG +R G+ V+++ T G GL +A A G +I+T + L+R L
Sbjct: 183 EKGHLRAGDRVVVQGTGGVALFGLQ-IAKATGAEVIVTSSSREKLDRAFAL 232
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 139 KYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVN-LLDETVQISSE 197
K L H VE V SG H I+ +G LD LLD+ + ++
Sbjct: 157 KLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQP 216
Query: 198 EAIETAKLLALKEGL 212
+ IE AK+L G+
Sbjct: 217 KRIENAKILIANTGM 231
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 10 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL 57
++ GESVL+ SG G+GLA A+ Y L I A +++VL
Sbjct: 167 CVKAGESVLVHGASG--GVGLAACQIARAYGLKILGTAGTEEGQKIVL 212
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb
pdb|2DH6|A Chain A, Crystal Structure Of E. Coli Apo-trpb
Length = 397
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 190 ETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGER 249
+ V I+ +EA+E K L L EG++ + S + + +L+VV G++
Sbjct: 323 DYVSITDDEALEAFKTLCLHEGIIPALESSHALAHALKMMRENPDKEQLLVVNLSGRGDK 382
Query: 250 YLSSV 254
+ +V
Sbjct: 383 DIFTV 387
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66
E G + PGE VLI +G G+ +A G R+ T + S +R +L G E V
Sbjct: 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTT---AGSDAKREMLSRLGVEYV- 87
Query: 67 TDPARGMKGAVQKAEEIRDKT 87
G +V A+EI + T
Sbjct: 88 -----GDSRSVDFADEILELT 103
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81
++GN G+ + +A G+++ + A ++ L + G +V + G+ AV++
Sbjct: 165 STGNLGLSIGIXSACIGFKVTVHXSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGR 222
Query: 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEI 113
+ PN + + EN + Y G +
Sbjct: 223 KAAQSDPNCFFIDD-ENSRTLFLGYAVAGQRL 253
>pdb|2Z1T|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
pdb|2Z1U|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
In Complex With Atp
Length = 343
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 12 RPGESVLIEPTSGNTGIGLAFMAAAKGYRL---IITMPASMSLERRMVLLAFGAELVLTD 68
RPG+++LI + G+ GL ++ +G + + AS++ ++L G VL D
Sbjct: 163 RPGDAILISGSMGDH--GLTILSQRQGLNFAADVCSDSASLNRVVEKLVLEVGDIHVLRD 220
Query: 69 PARG 72
P RG
Sbjct: 221 PTRG 224
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITM---PASMSLERRM 55
M+ D E+ ++PG+SV+ + N+G+G A +AAA G R I + P L R
Sbjct: 158 MLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDR- 211
Query: 56 VLLAFGAELVLTD 68
L + GAE V+T+
Sbjct: 212 -LKSLGAEHVITE 223
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITM---PASMSLERRM 55
M+ D E+ ++PG+SV+ + N+G+G A +AAA G R I + P L R
Sbjct: 145 MLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDR- 198
Query: 56 VLLAFGAELVLTD 68
L + GAE V+T+
Sbjct: 199 -LKSLGAEHVITE 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,457,543
Number of Sequences: 62578
Number of extensions: 277250
Number of successful extensions: 550
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 61
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)