Query 024252
Match_columns 270
No_of_seqs 196 out of 1240
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02565 cysteine synthase 100.0 1.9E-58 4.2E-63 405.0 31.1 270 1-270 53-322 (322)
2 COG0031 CysK Cysteine synthase 100.0 1.8E-58 3.8E-63 392.1 29.2 249 1-252 49-299 (300)
3 PLN02556 cysteine synthase/L-3 100.0 2E-56 4.4E-61 397.7 30.9 269 1-269 97-365 (368)
4 PLN00011 cysteine synthase 100.0 4.6E-55 9.9E-60 384.8 31.9 267 1-267 55-321 (323)
5 PLN03013 cysteine synthase 100.0 5.7E-55 1.2E-59 390.4 27.4 254 1-254 161-415 (429)
6 TIGR01136 cysKM cysteine synth 100.0 1E-53 2.2E-58 373.2 29.9 255 1-256 45-299 (299)
7 TIGR01139 cysK cysteine syntha 100.0 2.4E-53 5.1E-58 370.9 30.2 254 1-256 44-298 (298)
8 KOG1252 Cystathionine beta-syn 100.0 8E-55 1.7E-59 367.8 19.1 266 1-266 90-360 (362)
9 PRK11761 cysM cysteine synthas 100.0 3.1E-52 6.7E-57 362.4 28.5 246 1-257 50-295 (296)
10 PRK10717 cysteine synthase A; 100.0 4.2E-52 9.2E-57 367.6 29.5 260 1-262 51-323 (330)
11 TIGR01138 cysM cysteine syntha 100.0 1.9E-51 4.1E-56 356.7 29.4 245 1-256 46-290 (290)
12 PLN02356 phosphateglycerate ki 100.0 1.6E-51 3.4E-56 368.2 28.8 260 1-262 91-408 (423)
13 cd01561 CBS_like CBS_like: Thi 100.0 3.9E-51 8.4E-56 355.9 29.6 249 2-252 41-291 (291)
14 TIGR01137 cysta_beta cystathio 100.0 8.6E-51 1.9E-55 374.3 29.6 260 1-262 49-317 (454)
15 COG1171 IlvA Threonine dehydra 100.0 1.5E-50 3.3E-55 349.4 23.5 230 17-252 76-318 (347)
16 cd06448 L-Ser-dehyd Serine deh 100.0 1.1E-47 2.3E-52 336.9 25.4 248 1-252 39-307 (316)
17 PLN02550 threonine dehydratase 100.0 1.1E-47 2.4E-52 355.1 26.0 231 17-252 159-401 (591)
18 PRK12483 threonine dehydratase 100.0 1.6E-47 3.5E-52 352.0 27.0 231 17-252 87-329 (521)
19 PRK08329 threonine synthase; V 100.0 5E-47 1.1E-51 336.7 26.1 240 1-251 95-347 (347)
20 TIGR01127 ilvA_1Cterm threonin 100.0 4.4E-47 9.4E-52 341.8 24.3 245 2-260 39-295 (380)
21 TIGR01124 ilvA_2Cterm threonin 100.0 1E-46 2.2E-51 347.0 26.1 232 16-252 66-309 (499)
22 PRK06352 threonine synthase; V 100.0 6.8E-47 1.5E-51 336.1 23.6 244 1-254 66-324 (351)
23 PRK08526 threonine dehydratase 100.0 1.5E-46 3.2E-51 338.5 24.8 236 16-260 69-316 (403)
24 PRK02991 D-serine dehydratase; 100.0 1.9E-46 4.1E-51 339.4 25.5 245 5-252 131-428 (441)
25 PRK06608 threonine dehydratase 100.0 1.4E-46 3E-51 332.1 23.5 239 1-251 61-312 (338)
26 PRK08813 threonine dehydratase 100.0 2.1E-46 4.5E-51 329.8 24.3 238 2-261 72-320 (349)
27 PRK09224 threonine dehydratase 100.0 2.9E-46 6.3E-51 345.3 26.3 233 15-252 68-312 (504)
28 PRK07591 threonine synthase; V 100.0 2.4E-46 5.2E-51 339.6 25.3 245 2-254 129-397 (421)
29 PRK08197 threonine synthase; V 100.0 3.5E-46 7.7E-51 336.7 26.3 244 1-253 118-386 (394)
30 PLN02970 serine racemase 100.0 1.9E-46 4E-51 330.8 23.9 242 2-253 66-321 (328)
31 PRK06382 threonine dehydratase 100.0 3E-46 6.4E-51 338.2 24.2 228 17-252 75-314 (406)
32 PRK07048 serine/threonine dehy 100.0 3.3E-46 7.2E-51 328.9 23.6 230 15-252 72-313 (321)
33 PRK06721 threonine synthase; R 100.0 1.3E-45 2.8E-50 328.2 26.9 246 1-257 66-327 (352)
34 PRK08639 threonine dehydratase 100.0 4.8E-46 1E-50 338.0 24.5 232 16-252 74-320 (420)
35 PRK08198 threonine dehydratase 100.0 5.4E-46 1.2E-50 337.1 24.6 230 15-252 70-311 (404)
36 PRK06110 hypothetical protein; 100.0 2.9E-46 6.3E-51 329.1 22.2 245 2-260 60-316 (322)
37 PRK07476 eutB threonine dehydr 100.0 5.5E-46 1.2E-50 327.3 23.4 248 1-262 57-318 (322)
38 PRK06815 hypothetical protein; 100.0 6.2E-46 1.3E-50 326.4 23.6 227 16-249 69-308 (317)
39 PRK08638 threonine dehydratase 100.0 1.6E-45 3.4E-50 324.8 25.5 236 16-260 76-324 (333)
40 PRK07334 threonine dehydratase 100.0 2.4E-46 5.1E-51 338.8 20.6 229 16-252 72-310 (403)
41 TIGR02079 THD1 threonine dehyd 100.0 1.2E-45 2.6E-50 333.9 25.2 230 16-252 65-309 (409)
42 PRK07409 threonine synthase; V 100.0 3.5E-45 7.7E-50 326.0 25.7 243 1-254 69-328 (353)
43 TIGR02035 D_Ser_am_lyase D-ser 100.0 7.6E-45 1.7E-49 327.8 26.9 242 4-248 125-421 (431)
44 KOG1250 Threonine/serine dehyd 100.0 3E-45 6.4E-50 314.6 22.0 231 16-252 115-357 (457)
45 cd01563 Thr-synth_1 Threonine 100.0 1E-44 2.3E-49 320.1 25.9 240 1-250 61-324 (324)
46 cd01562 Thr-dehyd Threonine de 100.0 3.5E-45 7.5E-50 320.6 22.6 235 2-247 56-302 (304)
47 TIGR02991 ectoine_eutB ectoine 100.0 5.6E-45 1.2E-49 319.8 23.5 224 16-248 68-305 (317)
48 cd06447 D-Ser-dehyd D-Serine d 100.0 1.1E-44 2.4E-49 324.3 25.7 226 4-232 107-375 (404)
49 PLN02569 threonine synthase 100.0 2.1E-44 4.6E-49 329.6 26.3 245 2-253 174-444 (484)
50 PRK08246 threonine dehydratase 100.0 9.7E-45 2.1E-49 317.6 22.8 228 15-252 68-307 (310)
51 KOG1251 Serine racemase [Signa 100.0 5.1E-45 1.1E-49 295.1 18.7 231 15-253 73-315 (323)
52 PRK06260 threonine synthase; V 100.0 2.2E-44 4.8E-49 325.3 24.8 242 2-254 107-374 (397)
53 PRK06381 threonine synthase; V 100.0 3.1E-44 6.7E-49 316.3 25.0 237 1-246 54-317 (319)
54 PRK08206 diaminopropionate amm 100.0 2.5E-44 5.4E-49 324.1 24.6 233 17-253 118-388 (399)
55 PRK06450 threonine synthase; V 100.0 2.8E-44 6.2E-49 316.9 24.4 229 1-251 88-338 (338)
56 PRK05638 threonine synthase; V 100.0 2.8E-43 6.1E-48 322.0 25.5 238 1-251 103-359 (442)
57 cd00640 Trp-synth-beta_II Tryp 100.0 1.3E-42 2.7E-47 295.3 26.1 206 1-246 38-244 (244)
58 TIGR01747 diampropi_NH3ly diam 100.0 5.6E-43 1.2E-47 312.3 23.8 242 6-252 83-368 (376)
59 TIGR00260 thrC threonine synth 100.0 3.6E-42 7.8E-47 304.4 24.9 241 2-252 63-328 (328)
60 cd06446 Trp-synth_B Tryptophan 100.0 8.7E-42 1.9E-46 305.1 25.8 245 2-253 74-364 (365)
61 TIGR03844 cysteate_syn cysteat 100.0 3.2E-42 7E-47 309.3 22.1 242 2-252 109-384 (398)
62 cd06449 ACCD Aminocyclopropane 100.0 2.5E-42 5.4E-47 302.6 20.6 240 1-246 43-307 (307)
63 KOG1481 Cysteine synthase [Ami 100.0 2.1E-41 4.5E-46 278.9 20.6 260 1-262 87-374 (391)
64 PRK13028 tryptophan synthase s 100.0 1.1E-40 2.3E-45 298.4 26.7 246 3-254 103-393 (402)
65 TIGR03528 2_3_DAP_am_ly diamin 100.0 4.9E-41 1.1E-45 301.8 23.8 233 16-252 114-387 (396)
66 PRK12390 1-aminocyclopropane-1 100.0 2.4E-41 5.2E-46 299.7 21.1 241 1-246 58-324 (337)
67 TIGR00263 trpB tryptophan synt 100.0 1.9E-40 4.2E-45 297.8 25.3 236 17-254 101-381 (385)
68 TIGR01275 ACC_deam_rel pyridox 100.0 3.7E-41 8E-46 295.8 18.7 239 1-246 47-300 (311)
69 PRK12391 tryptophan synthase s 100.0 1.3E-39 2.9E-44 294.1 28.0 250 3-260 119-425 (427)
70 PRK04346 tryptophan synthase s 100.0 6.5E-40 1.4E-44 292.9 25.2 246 3-254 99-389 (397)
71 TIGR01274 ACC_deam 1-aminocycl 100.0 2.1E-40 4.6E-45 293.6 21.5 241 1-248 57-324 (337)
72 TIGR01415 trpB_rel pyridoxal-p 100.0 1.6E-39 3.5E-44 293.2 26.8 248 2-260 109-416 (419)
73 PLN02618 tryptophan synthase, 100.0 1.7E-39 3.6E-44 290.8 24.9 236 17-254 122-402 (410)
74 PRK13802 bifunctional indole-3 100.0 3.3E-39 7.1E-44 303.6 27.4 247 2-254 371-669 (695)
75 PRK03910 D-cysteine desulfhydr 100.0 3.5E-40 7.6E-45 291.6 19.4 241 2-249 56-320 (331)
76 PF00291 PALP: Pyridoxal-phosp 100.0 8.8E-39 1.9E-43 280.2 17.2 234 2-245 48-306 (306)
77 PRK14045 1-aminocyclopropane-1 100.0 4.9E-38 1.1E-42 277.5 19.3 237 1-246 61-314 (329)
78 PRK13803 bifunctional phosphor 100.0 3.1E-37 6.8E-42 290.6 24.9 236 17-254 321-601 (610)
79 COG0498 ThrC Threonine synthas 100.0 2E-35 4.3E-40 263.0 21.9 233 16-253 127-378 (411)
80 COG2515 Acd 1-aminocyclopropan 100.0 3.9E-29 8.5E-34 209.5 17.6 236 11-247 60-313 (323)
81 PRK09225 threonine synthase; V 100.0 1.5E-27 3.2E-32 217.2 23.1 230 15-254 131-418 (462)
82 cd01560 Thr-synth_2 Threonine 100.0 7.9E-27 1.7E-31 212.5 22.1 234 14-254 131-422 (460)
83 COG0133 TrpB Tryptophan syntha 100.0 1.1E-26 2.4E-31 195.2 20.3 239 15-255 104-387 (396)
84 COG1350 Predicted alternative 99.9 4.4E-23 9.6E-28 174.0 19.2 245 14-262 126-428 (432)
85 KOG1395 Tryptophan synthase be 99.9 1E-21 2.2E-26 167.2 18.0 247 4-253 162-453 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 3.6E-21 7.9E-26 161.2 13.3 229 17-248 162-429 (443)
87 KOG2616 Pyridoxalphosphate-dep 94.2 0.1 2.2E-06 42.9 5.0 61 191-252 148-208 (266)
88 PF03808 Glyco_tran_WecB: Glyc 90.4 1.9 4.2E-05 34.4 8.0 119 27-153 13-133 (172)
89 COG1064 AdhP Zn-dependent alco 90.0 2.2 4.7E-05 38.0 8.6 62 4-69 157-218 (339)
90 cd08294 leukotriene_B4_DH_like 89.8 3.4 7.5E-05 35.9 9.9 57 7-66 137-193 (329)
91 TIGR03201 dearomat_had 6-hydro 89.7 3.7 8E-05 36.4 10.1 59 5-67 158-216 (349)
92 TIGR02819 fdhA_non_GSH formald 89.4 4.3 9.4E-05 36.9 10.5 57 5-64 177-233 (393)
93 cd08230 glucose_DH Glucose deh 87.7 3.5 7.6E-05 36.6 8.6 53 11-64 170-222 (355)
94 COG0604 Qor NADPH:quinone redu 86.7 5 0.00011 35.5 8.9 57 8-67 137-193 (326)
95 cd08233 butanediol_DH_like (2R 86.6 7.7 0.00017 34.3 10.1 58 6-66 165-222 (351)
96 TIGR03366 HpnZ_proposed putati 86.5 4.6 9.9E-05 34.6 8.4 58 5-65 112-169 (280)
97 cd06533 Glyco_transf_WecG_TagA 86.5 7 0.00015 31.1 8.8 119 27-153 11-131 (171)
98 TIGR03451 mycoS_dep_FDH mycoth 86.5 8.7 0.00019 34.2 10.4 57 6-65 169-225 (358)
99 cd08274 MDR9 Medium chain dehy 86.3 5.5 0.00012 35.0 9.0 57 5-65 169-225 (350)
100 TIGR00670 asp_carb_tr aspartat 86.2 5 0.00011 35.2 8.4 60 7-68 144-208 (301)
101 cd08256 Zn_ADH2 Alcohol dehydr 85.5 9.7 0.00021 33.6 10.2 57 6-65 167-223 (350)
102 TIGR02822 adh_fam_2 zinc-bindi 85.4 4.4 9.5E-05 35.7 7.8 57 5-65 157-213 (329)
103 TIGR02825 B4_12hDH leukotriene 85.3 8.2 0.00018 33.7 9.6 57 7-66 132-188 (325)
104 cd08281 liver_ADH_like1 Zinc-d 85.1 8.6 0.00019 34.4 9.8 56 7-65 185-240 (371)
105 PRK09880 L-idonate 5-dehydroge 84.7 7.3 0.00016 34.4 9.0 59 5-66 161-219 (343)
106 cd08295 double_bond_reductase_ 84.3 11 0.00024 33.1 10.0 56 7-65 145-201 (338)
107 PF05368 NmrA: NmrA-like famil 83.9 6.2 0.00013 32.7 7.8 51 18-69 2-52 (233)
108 cd08239 THR_DH_like L-threonin 83.1 11 0.00025 33.0 9.6 59 5-66 155-213 (339)
109 COG1063 Tdh Threonine dehydrog 83.0 34 0.00074 30.5 14.5 61 5-69 161-222 (350)
110 PLN03154 putative allyl alcoho 82.6 13 0.00028 33.1 9.7 57 7-66 152-209 (348)
111 PRK10309 galactitol-1-phosphat 82.5 8.9 0.00019 33.8 8.6 57 6-65 153-209 (347)
112 KOG0023 Alcohol dehydrogenase, 82.4 10 0.00022 33.5 8.4 62 5-69 173-234 (360)
113 KOG0024 Sorbitol dehydrogenase 82.3 15 0.00033 32.5 9.5 63 4-69 160-222 (354)
114 cd08292 ETR_like_2 2-enoyl thi 82.3 13 0.00029 32.1 9.6 55 6-63 132-186 (324)
115 cd08242 MDR_like Medium chain 82.2 7.9 0.00017 33.6 8.1 56 5-64 147-202 (319)
116 cd08296 CAD_like Cinnamyl alco 82.0 14 0.0003 32.4 9.6 54 7-64 157-210 (333)
117 cd08285 NADP_ADH NADP(H)-depen 81.7 17 0.00036 32.1 10.1 56 6-64 159-214 (351)
118 cd08293 PTGR2 Prostaglandin re 81.5 16 0.00035 32.0 9.9 57 7-66 146-206 (345)
119 PF07279 DUF1442: Protein of u 81.4 7.8 0.00017 32.1 7.1 56 4-62 34-94 (218)
120 COG0399 WecE Predicted pyridox 81.4 14 0.0003 33.5 9.3 56 15-70 49-104 (374)
121 cd08297 CAD3 Cinnamyl alcohol 81.1 17 0.00036 31.9 9.8 54 8-64 160-213 (341)
122 cd08287 FDH_like_ADH3 formalde 80.8 18 0.00039 31.7 10.0 54 7-63 162-215 (345)
123 PF01041 DegT_DnrJ_EryC1: DegT 80.8 3.3 7.3E-05 37.1 5.3 56 15-70 40-95 (363)
124 PF00107 ADH_zinc_N: Zinc-bind 80.6 8.9 0.00019 28.3 6.9 32 120-154 58-89 (130)
125 COG2130 Putative NADP-dependen 79.8 17 0.00037 31.9 8.9 59 5-66 142-201 (340)
126 cd08300 alcohol_DH_class_III c 79.7 12 0.00026 33.4 8.6 57 7-66 180-236 (368)
127 PLN02740 Alcohol dehydrogenase 79.4 22 0.00048 32.0 10.2 58 6-66 191-248 (381)
128 cd08277 liver_alcohol_DH_like 78.8 11 0.00023 33.7 8.0 56 7-65 178-233 (365)
129 PF00185 OTCace: Aspartate/orn 78.7 10 0.00022 29.7 6.9 46 23-68 12-65 (158)
130 PTZ00354 alcohol dehydrogenase 78.5 21 0.00046 30.8 9.6 56 8-66 135-190 (334)
131 cd08301 alcohol_DH_plants Plan 78.2 15 0.00032 32.8 8.7 58 6-66 180-237 (369)
132 cd08269 Zn_ADH9 Alcohol dehydr 77.7 29 0.00062 29.7 10.1 54 6-63 122-176 (312)
133 PF02826 2-Hacid_dh_C: D-isome 77.7 31 0.00068 27.4 9.6 115 16-156 37-154 (178)
134 TIGR02818 adh_III_F_hyde S-(hy 77.0 17 0.00037 32.5 8.7 57 7-66 179-235 (368)
135 cd08258 Zn_ADH4 Alcohol dehydr 76.9 21 0.00046 30.9 9.1 55 7-63 158-212 (306)
136 TIGR00696 wecB_tagA_cpsF bacte 76.9 23 0.00051 28.4 8.5 118 27-153 13-132 (177)
137 TIGR00692 tdh L-threonine 3-de 76.7 24 0.00052 30.9 9.5 51 10-63 158-208 (340)
138 cd08284 FDH_like_2 Glutathione 76.6 16 0.00034 32.1 8.3 55 7-64 161-215 (344)
139 PRK09424 pntA NAD(P) transhydr 76.4 13 0.00027 35.2 7.8 52 13-68 164-215 (509)
140 PF01210 NAD_Gly3P_dh_N: NAD-d 76.4 5.6 0.00012 31.1 4.7 41 18-61 2-42 (157)
141 PRK05396 tdh L-threonine 3-deh 76.1 21 0.00046 31.3 8.9 51 12-65 162-212 (341)
142 PRK13656 trans-2-enoyl-CoA red 76.1 32 0.0007 31.4 9.9 43 2-45 28-73 (398)
143 PRK08993 2-deoxy-D-gluconate 3 75.5 38 0.00082 28.3 10.0 54 14-68 10-63 (253)
144 TIGR01751 crot-CoA-red crotony 75.4 17 0.00037 32.9 8.3 56 9-67 185-240 (398)
145 PRK08703 short chain dehydroge 75.3 38 0.00082 27.8 9.9 33 14-46 6-38 (239)
146 cd08246 crotonyl_coA_red croto 75.2 14 0.0003 33.3 7.7 55 9-66 189-243 (393)
147 cd08278 benzyl_alcohol_DH Benz 75.1 33 0.0007 30.6 10.0 56 7-65 180-235 (365)
148 cd08231 MDR_TM0436_like Hypoth 74.9 39 0.00085 29.9 10.4 52 9-64 173-225 (361)
149 PF00107 ADH_zinc_N: Zinc-bind 74.8 13 0.00029 27.4 6.3 43 27-72 3-45 (130)
150 PRK12823 benD 1,6-dihydroxycyc 74.7 24 0.00052 29.5 8.6 73 14-86 8-81 (260)
151 PRK10754 quinone oxidoreductas 74.7 34 0.00073 29.7 9.8 53 8-63 135-187 (327)
152 TIGR01064 pyruv_kin pyruvate k 74.6 76 0.0017 29.8 12.5 124 29-158 261-407 (473)
153 PF00106 adh_short: short chai 74.5 28 0.00061 26.7 8.4 54 16-69 2-59 (167)
154 PLN02702 L-idonate 5-dehydroge 74.4 22 0.00047 31.6 8.7 58 6-66 174-231 (364)
155 PF04127 DFP: DNA / pantothena 74.4 24 0.00053 28.5 8.1 63 15-86 20-82 (185)
156 PRK08628 short chain dehydroge 74.4 32 0.00069 28.6 9.3 56 14-69 7-62 (258)
157 PRK10083 putative oxidoreducta 74.2 27 0.00057 30.5 9.1 59 5-66 152-211 (339)
158 cd08244 MDR_enoyl_red Possible 73.9 36 0.00077 29.3 9.8 54 6-62 135-188 (324)
159 PLN02827 Alcohol dehydrogenase 73.8 24 0.00052 31.7 8.8 56 7-65 187-242 (378)
160 cd00401 AdoHcyase S-adenosyl-L 73.5 16 0.00034 33.6 7.5 53 9-65 197-249 (413)
161 cd08298 CAD2 Cinnamyl alcohol 73.4 18 0.0004 31.4 7.8 54 6-63 160-213 (329)
162 TIGR00730 conserved hypothetic 73.4 33 0.00072 27.5 8.6 49 106-157 17-66 (178)
163 PRK12481 2-deoxy-D-gluconate 3 73.1 34 0.00074 28.5 9.2 54 14-68 8-61 (251)
164 PRK06935 2-deoxy-D-gluconate 3 72.7 36 0.00078 28.4 9.2 73 14-86 15-88 (258)
165 cd08291 ETR_like_1 2-enoyl thi 72.6 37 0.0008 29.5 9.5 49 16-67 145-194 (324)
166 cd05278 FDH_like Formaldehyde 72.2 33 0.00072 30.0 9.2 54 7-63 161-214 (347)
167 cd08251 polyketide_synthase po 72.0 48 0.001 27.9 10.0 55 6-63 113-167 (303)
168 PRK12771 putative glutamate sy 71.7 10 0.00023 36.2 6.2 56 11-67 134-207 (564)
169 COG0078 ArgF Ornithine carbamo 71.7 24 0.00053 30.8 7.7 62 7-69 147-214 (310)
170 PRK12743 oxidoreductase; Provi 71.6 40 0.00087 28.1 9.3 72 15-86 3-77 (256)
171 cd01075 NAD_bind_Leu_Phe_Val_D 71.6 41 0.00089 27.4 9.0 46 16-64 29-75 (200)
172 cd08245 CAD Cinnamyl alcohol d 71.6 24 0.00052 30.7 8.1 57 6-66 155-211 (330)
173 PRK09422 ethanol-active dehydr 71.5 38 0.00083 29.5 9.4 57 5-65 154-211 (338)
174 PF00070 Pyr_redox: Pyridine n 71.0 29 0.00062 23.3 7.0 49 18-66 2-59 (80)
175 cd05285 sorbitol_DH Sorbitol d 70.8 30 0.00064 30.4 8.6 56 6-64 155-210 (343)
176 PRK13394 3-hydroxybutyrate deh 70.7 43 0.00092 27.8 9.3 56 14-69 7-63 (262)
177 PRK08589 short chain dehydroge 70.5 32 0.00069 29.1 8.5 55 14-68 6-60 (272)
178 cd08286 FDH_like_ADH2 formalde 70.5 39 0.00083 29.6 9.3 53 7-63 160-213 (345)
179 cd08250 Mgc45594_like Mgc45594 70.3 54 0.0012 28.3 10.1 53 8-63 134-186 (329)
180 PRK07109 short chain dehydroge 70.3 31 0.00067 30.5 8.6 56 14-69 8-64 (334)
181 cd08261 Zn_ADH7 Alcohol dehydr 70.3 47 0.001 29.0 9.7 52 7-62 153-204 (337)
182 cd08299 alcohol_DH_class_I_II_ 70.2 32 0.00069 30.8 8.8 55 6-63 183-237 (373)
183 cd05282 ETR_like 2-enoyl thioe 70.2 34 0.00074 29.4 8.8 52 8-62 133-184 (323)
184 cd08235 iditol_2_DH_like L-idi 69.9 58 0.0012 28.4 10.2 54 6-62 158-211 (343)
185 cd05283 CAD1 Cinnamyl alcohol 69.9 27 0.00058 30.6 8.1 54 9-66 165-218 (337)
186 cd08243 quinone_oxidoreductase 69.9 49 0.0011 28.2 9.7 55 8-65 137-191 (320)
187 TIGR02824 quinone_pig3 putativ 69.8 48 0.001 28.2 9.6 54 7-63 133-186 (325)
188 cd08262 Zn_ADH8 Alcohol dehydr 69.8 32 0.0007 30.0 8.6 55 6-63 154-208 (341)
189 TIGR00561 pntA NAD(P) transhyd 69.5 28 0.00062 32.9 8.3 50 17-69 166-215 (511)
190 PRK08226 short chain dehydroge 69.3 39 0.00086 28.2 8.8 55 14-68 6-60 (263)
191 TIGR02823 oxido_YhdH putative 69.3 29 0.00062 30.0 8.1 54 7-63 138-192 (323)
192 cd05288 PGDH Prostaglandin deh 69.2 46 0.00099 28.8 9.4 53 8-63 140-193 (329)
193 cd08260 Zn_ADH6 Alcohol dehydr 69.2 51 0.0011 28.9 9.7 52 7-62 159-210 (345)
194 cd05279 Zn_ADH1 Liver alcohol 69.1 49 0.0011 29.4 9.7 54 7-63 177-230 (365)
195 TIGR01832 kduD 2-deoxy-D-gluco 68.9 53 0.0012 27.0 9.4 54 14-68 5-58 (248)
196 PRK05993 short chain dehydroge 68.8 71 0.0015 27.0 10.9 53 14-69 4-56 (277)
197 PLN02527 aspartate carbamoyltr 68.7 37 0.00081 29.8 8.6 60 7-68 145-210 (306)
198 cd05188 MDR Medium chain reduc 68.7 53 0.0012 27.1 9.4 52 8-63 129-180 (271)
199 PRK11706 TDP-4-oxo-6-deoxy-D-g 68.6 20 0.00044 32.2 7.1 55 15-69 46-100 (375)
200 PRK06114 short chain dehydroge 68.5 64 0.0014 26.8 9.8 55 14-68 8-64 (254)
201 PRK06182 short chain dehydroge 68.4 71 0.0015 26.9 10.5 69 14-86 3-71 (273)
202 cd08279 Zn_ADH_class_III Class 68.4 62 0.0013 28.7 10.2 54 7-63 176-229 (363)
203 cd08255 2-desacetyl-2-hydroxye 68.1 30 0.00064 29.2 7.8 52 6-61 90-142 (277)
204 cd08289 MDR_yhfp_like Yhfp put 68.0 34 0.00074 29.5 8.3 49 12-63 145-193 (326)
205 cd08259 Zn_ADH5 Alcohol dehydr 67.8 36 0.00079 29.3 8.5 54 7-63 156-209 (332)
206 cd08264 Zn_ADH_like2 Alcohol d 67.5 27 0.00059 30.2 7.6 39 6-44 155-193 (325)
207 PRK06139 short chain dehydroge 67.5 34 0.00073 30.3 8.2 55 14-68 7-62 (330)
208 cd08282 PFDH_like Pseudomonas 67.4 32 0.0007 30.7 8.2 56 6-64 169-224 (375)
209 cd05286 QOR2 Quinone oxidoredu 67.4 56 0.0012 27.6 9.5 53 8-63 131-183 (320)
210 PRK07792 fabG 3-ketoacyl-(acyl 67.3 69 0.0015 27.7 10.1 56 14-69 12-69 (306)
211 PRK05786 fabG 3-ketoacyl-(acyl 67.1 44 0.00094 27.3 8.4 34 14-47 5-38 (238)
212 cd08267 MDR1 Medium chain dehy 66.9 32 0.0007 29.4 7.9 52 8-63 138-189 (319)
213 KOG0025 Zn2+-binding dehydroge 66.8 24 0.00052 30.9 6.6 58 11-69 158-217 (354)
214 PF08659 KR: KR domain; Inter 66.6 38 0.00082 26.9 7.7 53 17-69 3-60 (181)
215 PRK12937 short chain dehydroge 66.5 63 0.0014 26.5 9.3 56 14-69 5-62 (245)
216 COG1587 HemD Uroporphyrinogen- 66.4 79 0.0017 26.6 10.0 119 27-154 86-211 (248)
217 PF01262 AlaDh_PNT_C: Alanine 66.2 24 0.00051 27.8 6.3 50 17-69 22-71 (168)
218 cd05281 TDH Threonine dehydrog 66.2 46 0.001 29.1 8.8 50 11-63 161-210 (341)
219 PRK11891 aspartate carbamoyltr 66.1 39 0.00086 31.2 8.4 54 14-68 241-300 (429)
220 cd08234 threonine_DH_like L-th 65.9 70 0.0015 27.7 9.9 54 7-63 153-206 (334)
221 cd08253 zeta_crystallin Zeta-c 65.8 70 0.0015 27.1 9.8 52 9-63 140-191 (325)
222 PF09837 DUF2064: Uncharacteri 65.7 54 0.0012 24.5 9.0 97 30-132 2-99 (122)
223 cd08288 MDR_yhdh Yhdh putative 65.5 41 0.00089 29.0 8.3 51 13-66 146-196 (324)
224 PRK02610 histidinol-phosphate 65.4 42 0.00091 30.0 8.5 53 17-69 93-145 (374)
225 PRK07523 gluconate 5-dehydroge 65.4 51 0.0011 27.4 8.6 55 14-68 10-65 (255)
226 PRK07097 gluconate 5-dehydroge 65.2 51 0.0011 27.6 8.6 55 14-68 10-65 (265)
227 PRK05557 fabG 3-ketoacyl-(acyl 65.0 69 0.0015 26.1 9.3 55 15-69 6-62 (248)
228 KOG1201 Hydroxysteroid 17-beta 64.9 96 0.0021 27.2 10.0 74 14-88 38-113 (300)
229 PRK08063 enoyl-(acyl carrier p 64.6 75 0.0016 26.1 9.5 56 14-69 4-61 (250)
230 cd08249 enoyl_reductase_like e 64.5 42 0.00091 29.4 8.2 50 11-64 152-201 (339)
231 COG0800 Eda 2-keto-3-deoxy-6-p 64.4 75 0.0016 26.3 8.9 25 18-42 18-42 (211)
232 cd08254 hydroxyacyl_CoA_DH 6-h 64.3 76 0.0016 27.4 9.8 55 7-65 159-213 (338)
233 PRK12828 short chain dehydroge 64.2 70 0.0015 25.9 9.2 56 14-69 7-63 (239)
234 PRK08277 D-mannonate oxidoredu 64.2 58 0.0013 27.5 8.9 55 14-68 10-65 (278)
235 PRK06172 short chain dehydroge 63.2 63 0.0014 26.7 8.8 55 14-68 7-62 (253)
236 cd08241 QOR1 Quinone oxidoredu 63.1 85 0.0018 26.6 9.8 52 8-62 134-185 (323)
237 PRK12938 acetyacetyl-CoA reduc 63.0 82 0.0018 25.9 9.4 54 15-68 4-59 (246)
238 cd05284 arabinose_DH_like D-ar 63.0 59 0.0013 28.3 8.9 51 9-63 163-214 (340)
239 cd08248 RTN4I1 Human Reticulon 62.9 50 0.0011 28.8 8.5 47 13-63 162-208 (350)
240 PRK08192 aspartate carbamoyltr 62.7 53 0.0012 29.3 8.4 57 10-68 156-218 (338)
241 PRK08261 fabG 3-ketoacyl-(acyl 62.3 95 0.0021 28.5 10.5 57 13-69 209-265 (450)
242 PRK08862 short chain dehydroge 62.2 66 0.0014 26.5 8.6 54 14-67 5-59 (227)
243 cd08276 MDR7 Medium chain dehy 62.1 1E+02 0.0022 26.5 10.2 52 9-64 156-207 (336)
244 cd08240 6_hydroxyhexanoate_dh_ 62.0 78 0.0017 27.7 9.5 51 10-63 172-222 (350)
245 PLN02586 probable cinnamyl alc 61.7 35 0.00076 30.4 7.3 54 9-65 179-232 (360)
246 PRK00779 ornithine carbamoyltr 61.6 51 0.0011 28.9 8.0 61 7-68 146-209 (304)
247 cd08283 FDH_like_1 Glutathione 61.6 80 0.0017 28.4 9.7 56 6-64 177-233 (386)
248 PLN02342 ornithine carbamoyltr 61.6 52 0.0011 29.5 8.1 61 7-68 188-251 (348)
249 PRK07478 short chain dehydroge 61.4 69 0.0015 26.5 8.7 73 14-86 6-80 (254)
250 PRK08643 acetoin reductase; Va 61.2 82 0.0018 26.1 9.1 54 15-68 3-57 (256)
251 PRK12939 short chain dehydroge 61.1 70 0.0015 26.2 8.7 55 14-68 7-62 (250)
252 TIGR01316 gltA glutamate synth 61.1 42 0.00091 31.1 7.8 55 13-68 271-330 (449)
253 TIGR03590 PseG pseudaminic aci 61.1 82 0.0018 27.1 9.2 33 36-69 29-61 (279)
254 cd06324 PBP1_ABC_sugar_binding 60.8 1.1E+02 0.0023 26.3 16.1 42 110-154 193-238 (305)
255 PRK04870 histidinol-phosphate 60.7 87 0.0019 27.7 9.6 83 17-100 83-166 (356)
256 PRK02102 ornithine carbamoyltr 60.6 77 0.0017 28.2 9.0 59 8-68 150-216 (331)
257 TIGR00936 ahcY adenosylhomocys 60.6 44 0.00096 30.7 7.6 97 9-133 190-286 (406)
258 COG2894 MinD Septum formation 60.6 71 0.0015 26.9 8.0 120 22-160 19-150 (272)
259 PRK04523 N-acetylornithine car 60.3 59 0.0013 29.0 8.3 45 24-68 185-236 (335)
260 PF13561 adh_short_C2: Enoyl-( 60.2 44 0.00096 27.6 7.3 64 22-86 4-69 (241)
261 cd08290 ETR 2-enoyl thioester 60.2 63 0.0014 28.1 8.6 58 9-66 142-200 (341)
262 PRK06128 oxidoreductase; Provi 60.1 1E+02 0.0022 26.5 9.8 55 14-68 55-112 (300)
263 PRK08936 glucose-1-dehydrogena 60.1 1E+02 0.0022 25.7 9.5 55 14-68 7-63 (261)
264 PLN02178 cinnamyl-alcohol dehy 60.0 41 0.00089 30.3 7.4 51 12-65 177-227 (375)
265 COG0623 FabI Enoyl-[acyl-carri 60.0 58 0.0012 27.5 7.5 69 54-129 25-93 (259)
266 PRK12779 putative bifunctional 60.0 80 0.0017 32.5 10.1 32 15-46 306-337 (944)
267 PRK08303 short chain dehydroge 59.9 87 0.0019 27.2 9.3 73 14-86 8-92 (305)
268 KOG1197 Predicted quinone oxid 59.8 68 0.0015 27.6 8.0 55 6-63 139-193 (336)
269 cd08272 MDR6 Medium chain dehy 59.8 90 0.0019 26.6 9.4 54 7-64 138-191 (326)
270 TIGR03877 thermo_KaiC_1 KaiC d 59.8 33 0.00072 28.7 6.4 56 8-63 15-74 (237)
271 PRK06348 aspartate aminotransf 59.6 66 0.0014 28.9 8.7 51 17-68 91-141 (384)
272 KOG1176 Acyl-CoA synthetase [L 59.5 1.2E+02 0.0026 29.0 10.6 68 3-70 59-128 (537)
273 PRK07550 hypothetical protein; 59.5 47 0.001 29.8 7.8 52 17-69 92-143 (386)
274 TIGR02817 adh_fam_1 zinc-bindi 59.5 47 0.001 28.8 7.6 48 14-64 149-197 (336)
275 PRK04284 ornithine carbamoyltr 59.4 65 0.0014 28.7 8.4 58 9-68 151-216 (332)
276 PRK09134 short chain dehydroge 59.3 1E+02 0.0022 25.6 9.7 55 14-68 9-65 (258)
277 cd08270 MDR4 Medium chain dehy 59.3 64 0.0014 27.4 8.3 48 13-63 132-179 (305)
278 PRK10669 putative cation:proto 59.3 50 0.0011 31.6 8.2 51 16-69 418-468 (558)
279 TIGR02379 ECA_wecE TDP-4-keto- 59.3 35 0.00075 30.8 6.8 56 15-70 46-101 (376)
280 PRK03562 glutathione-regulated 59.1 51 0.0011 32.1 8.3 52 15-69 400-451 (621)
281 PRK12809 putative oxidoreducta 58.9 50 0.0011 32.2 8.3 53 16-68 311-381 (639)
282 PRK07806 short chain dehydroge 58.8 1E+02 0.0022 25.3 9.4 55 14-68 6-62 (248)
283 PF02737 3HCDH_N: 3-hydroxyacy 58.7 34 0.00073 27.4 6.0 30 18-47 2-31 (180)
284 PF11814 DUF3335: Peptidase_C3 58.7 26 0.00057 28.8 5.3 35 15-49 42-78 (207)
285 PRK08278 short chain dehydroge 58.7 1.1E+02 0.0024 25.8 9.6 55 14-68 6-68 (273)
286 PF00670 AdoHcyase_NAD: S-aden 58.7 57 0.0012 25.8 7.0 94 10-131 19-112 (162)
287 PRK08306 dipicolinate synthase 58.5 88 0.0019 27.3 9.0 46 17-65 154-199 (296)
288 cd05276 p53_inducible_oxidored 58.4 1.1E+02 0.0024 25.8 9.7 51 9-62 135-185 (323)
289 PRK12935 acetoacetyl-CoA reduc 58.3 87 0.0019 25.7 8.8 56 14-69 6-63 (247)
290 PRK05653 fabG 3-ketoacyl-(acyl 58.3 1E+02 0.0022 25.1 9.2 54 15-68 6-60 (246)
291 PRK07454 short chain dehydroge 58.0 89 0.0019 25.6 8.8 55 14-68 6-61 (241)
292 PRK14030 glutamate dehydrogena 57.9 60 0.0013 30.2 8.1 41 5-45 218-258 (445)
293 cd08238 sorbose_phosphate_red 57.9 44 0.00096 30.4 7.4 52 7-60 169-222 (410)
294 PRK07666 fabG 3-ketoacyl-(acyl 57.8 96 0.0021 25.3 8.9 55 15-69 8-63 (239)
295 PRK05876 short chain dehydroge 57.8 87 0.0019 26.6 8.8 55 14-68 6-61 (275)
296 PRK02255 putrescine carbamoylt 57.5 75 0.0016 28.4 8.4 55 14-68 154-214 (338)
297 PRK06702 O-acetylhomoserine am 57.2 1.1E+02 0.0023 28.4 9.7 79 17-100 78-160 (432)
298 PRK13376 pyrB bifunctional asp 57.1 63 0.0014 30.7 8.2 54 14-68 174-233 (525)
299 PRK06701 short chain dehydroge 56.7 1.3E+02 0.0028 25.8 9.9 55 14-68 46-102 (290)
300 PRK06194 hypothetical protein; 56.7 1.2E+02 0.0025 25.7 9.5 56 14-69 6-62 (287)
301 PRK06124 gluconate 5-dehydroge 56.5 91 0.002 25.8 8.6 55 14-68 11-66 (256)
302 PRK12826 3-ketoacyl-(acyl-carr 56.4 94 0.002 25.4 8.6 56 14-69 6-62 (251)
303 PRK12429 3-hydroxybutyrate deh 56.3 1.1E+02 0.0023 25.2 9.0 54 15-68 5-59 (258)
304 PRK05867 short chain dehydroge 56.3 96 0.0021 25.7 8.7 55 14-68 9-64 (253)
305 PRK08217 fabG 3-ketoacyl-(acyl 56.2 91 0.002 25.6 8.6 55 14-68 5-60 (253)
306 cd05280 MDR_yhdh_yhfp Yhdh and 55.9 70 0.0015 27.4 8.1 47 15-64 148-194 (325)
307 PRK07791 short chain dehydroge 55.9 1.1E+02 0.0023 26.2 9.1 74 13-86 5-89 (286)
308 TIGR00658 orni_carb_tr ornithi 55.9 79 0.0017 27.7 8.3 61 7-68 142-208 (304)
309 PRK06505 enoyl-(acyl carrier p 55.8 1.2E+02 0.0026 25.7 9.3 33 14-46 7-41 (271)
310 cd05289 MDR_like_2 alcohol deh 55.5 97 0.0021 26.1 8.8 50 9-62 140-189 (309)
311 PRK07035 short chain dehydroge 55.5 1E+02 0.0022 25.4 8.8 54 15-68 9-63 (252)
312 PRK07324 transaminase; Validat 55.4 66 0.0014 28.8 8.0 52 17-69 82-133 (373)
313 TIGR03206 benzo_BadH 2-hydroxy 55.4 98 0.0021 25.4 8.6 56 14-69 3-59 (250)
314 PRK03659 glutathione-regulated 55.3 67 0.0015 31.1 8.4 96 16-153 401-497 (601)
315 PRK06949 short chain dehydroge 55.2 83 0.0018 26.0 8.2 34 14-47 9-42 (258)
316 PRK07231 fabG 3-ketoacyl-(acyl 55.0 1.2E+02 0.0025 24.9 9.2 34 14-47 5-38 (251)
317 PRK08085 gluconate 5-dehydroge 55.0 1.1E+02 0.0024 25.3 8.9 55 14-68 9-64 (254)
318 PLN02514 cinnamyl-alcohol dehy 54.9 66 0.0014 28.5 7.9 54 9-65 176-229 (357)
319 PRK08213 gluconate 5-dehydroge 54.7 1E+02 0.0022 25.6 8.7 56 14-69 12-68 (259)
320 PRK11658 UDP-4-amino-4-deoxy-L 54.6 42 0.00091 30.2 6.6 54 16-69 49-102 (379)
321 PRK05854 short chain dehydroge 54.4 1.3E+02 0.0029 26.0 9.6 34 14-47 14-47 (313)
322 PRK12744 short chain dehydroge 54.3 1.1E+02 0.0023 25.5 8.7 55 14-68 8-67 (257)
323 PRK06836 aspartate aminotransf 54.2 52 0.0011 29.7 7.1 52 17-69 98-149 (394)
324 TIGR02853 spore_dpaA dipicolin 54.0 1E+02 0.0022 26.7 8.6 45 16-63 152-196 (287)
325 PRK12831 putative oxidoreducta 54.0 71 0.0015 29.8 8.1 56 12-68 279-339 (464)
326 PRK14804 ornithine carbamoyltr 53.9 71 0.0015 28.2 7.6 38 13-50 152-189 (311)
327 PRK07677 short chain dehydroge 53.9 1.1E+02 0.0024 25.3 8.7 54 15-68 2-56 (252)
328 PRK08912 hypothetical protein; 53.8 1.1E+02 0.0024 27.3 9.3 52 17-69 89-140 (387)
329 cd08236 sugar_DH NAD(P)-depend 53.6 1.5E+02 0.0033 25.7 9.9 51 8-62 154-205 (343)
330 PRK06138 short chain dehydroge 53.5 1.2E+02 0.0026 24.9 8.9 54 14-68 5-59 (252)
331 PRK05370 argininosuccinate syn 53.2 1.9E+02 0.0042 26.9 12.2 136 9-153 6-156 (447)
332 PRK14807 histidinol-phosphate 53.2 84 0.0018 27.8 8.2 53 17-70 78-130 (351)
333 cd08265 Zn_ADH3 Alcohol dehydr 53.1 52 0.0011 29.5 6.9 53 9-64 199-251 (384)
334 PRK05866 short chain dehydroge 53.0 1.1E+02 0.0023 26.4 8.7 55 14-68 40-95 (293)
335 PRK07890 short chain dehydroge 52.9 1E+02 0.0023 25.4 8.4 56 13-68 4-60 (258)
336 TIGR03325 BphB_TodD cis-2,3-di 52.8 1.4E+02 0.0029 24.9 9.2 52 14-68 5-57 (262)
337 PRK06079 enoyl-(acyl carrier p 52.7 1E+02 0.0022 25.7 8.3 37 9-46 3-41 (252)
338 PF06745 KaiC: KaiC; InterPro 52.6 28 0.00061 28.7 4.8 56 8-63 13-73 (226)
339 cd08263 Zn_ADH10 Alcohol dehyd 52.5 1.3E+02 0.0028 26.7 9.3 51 9-62 183-233 (367)
340 COG1062 AdhC Zn-dependent alco 52.5 1.6E+02 0.0036 26.4 9.4 63 3-68 175-237 (366)
341 COG0300 DltE Short-chain dehyd 52.4 1.5E+02 0.0033 25.5 9.7 70 14-86 6-81 (265)
342 COG2185 Sbm Methylmalonyl-CoA 52.3 47 0.001 25.7 5.4 63 54-125 33-96 (143)
343 PRK06500 short chain dehydroge 51.7 1.3E+02 0.0029 24.5 9.3 52 14-68 6-58 (249)
344 PRK05476 S-adenosyl-L-homocyst 51.5 71 0.0015 29.5 7.5 48 13-64 211-258 (425)
345 PRK06181 short chain dehydroge 51.4 1.1E+02 0.0024 25.4 8.4 53 16-68 3-56 (263)
346 PRK15408 autoinducer 2-binding 51.4 1.7E+02 0.0038 25.8 16.3 43 109-154 199-242 (336)
347 PRK08264 short chain dehydroge 51.3 83 0.0018 25.7 7.5 33 15-47 7-40 (238)
348 PRK05973 replicative DNA helic 51.2 67 0.0015 27.1 6.8 56 8-63 58-117 (237)
349 TIGR01963 PHB_DH 3-hydroxybuty 51.1 1.1E+02 0.0025 25.0 8.3 53 16-68 3-56 (255)
350 PRK12749 quinate/shikimate deh 51.0 1E+02 0.0022 26.8 8.1 32 17-48 126-157 (288)
351 PRK09147 succinyldiaminopimela 50.9 1.3E+02 0.0029 27.0 9.3 53 17-69 92-146 (396)
352 PF00764 Arginosuc_synth: Argi 50.9 2E+02 0.0043 26.3 10.6 127 18-152 1-138 (388)
353 KOG0399 Glutamate synthase [Am 50.7 48 0.001 34.8 6.5 48 1-48 1765-1818(2142)
354 PRK05166 histidinol-phosphate 50.7 91 0.002 27.8 8.1 52 17-69 90-141 (371)
355 PF02310 B12-binding: B12 bind 50.6 72 0.0016 23.1 6.3 94 27-130 17-114 (121)
356 KOG1205 Predicted dehydrogenas 50.5 51 0.0011 28.6 6.0 74 14-87 12-89 (282)
357 PRK07814 short chain dehydroge 50.5 1.2E+02 0.0026 25.3 8.5 54 14-67 10-64 (263)
358 PLN00175 aminotransferase fami 50.3 76 0.0016 28.9 7.6 51 18-69 118-168 (413)
359 PF11760 CbiG_N: Cobalamin syn 50.3 48 0.001 23.1 4.8 48 113-160 4-51 (84)
360 cd00616 AHBA_syn 3-amino-5-hyd 50.1 1.1E+02 0.0024 26.7 8.5 53 17-69 35-87 (352)
361 COG2242 CobL Precorrin-6B meth 50.1 1.2E+02 0.0025 24.7 7.6 133 9-161 30-167 (187)
362 TIGR03538 DapC_gpp succinyldia 50.0 1.4E+02 0.003 26.8 9.3 53 17-69 92-145 (393)
363 PRK08265 short chain dehydroge 49.3 1.6E+02 0.0034 24.6 9.5 52 14-68 6-58 (261)
364 cd08268 MDR2 Medium chain dehy 49.3 1.6E+02 0.0035 24.9 9.6 36 9-44 140-175 (328)
365 TIGR02415 23BDH acetoin reduct 49.3 1.5E+02 0.0032 24.4 8.9 54 16-69 2-56 (254)
366 PRK07774 short chain dehydroge 49.2 1.5E+02 0.0032 24.3 9.1 34 14-47 6-39 (250)
367 PRK14805 ornithine carbamoyltr 49.1 62 0.0014 28.4 6.5 60 7-68 141-207 (302)
368 PTZ00079 NADP-specific glutama 49.1 1E+02 0.0022 28.7 8.1 30 16-45 238-267 (454)
369 PRK03515 ornithine carbamoyltr 48.9 72 0.0016 28.5 6.9 52 17-68 158-217 (336)
370 PRK03692 putative UDP-N-acetyl 48.9 1.3E+02 0.0028 25.5 8.2 94 27-132 69-169 (243)
371 PRK09072 short chain dehydroge 48.8 1.3E+02 0.0028 25.1 8.3 34 14-47 5-38 (263)
372 PRK12745 3-ketoacyl-(acyl-carr 48.7 1.5E+02 0.0033 24.3 9.2 53 16-68 4-58 (256)
373 PRK13243 glyoxylate reductase; 48.6 1.1E+02 0.0025 27.0 8.2 104 16-143 151-256 (333)
374 PRK06841 short chain dehydroge 48.5 1.5E+02 0.0033 24.3 8.8 34 14-47 15-48 (255)
375 PRK06077 fabG 3-ketoacyl-(acyl 48.5 1.3E+02 0.0028 24.7 8.2 54 15-68 7-62 (252)
376 TIGR03540 DapC_direct LL-diami 48.4 2E+02 0.0043 25.6 10.1 52 17-69 93-144 (383)
377 PRK12562 ornithine carbamoyltr 48.3 1.1E+02 0.0023 27.4 7.9 51 18-68 159-217 (334)
378 PRK06483 dihydromonapterin red 48.3 1.5E+02 0.0032 24.1 9.6 53 15-69 3-55 (236)
379 KOG2862 Alanine-glyoxylate ami 48.3 2E+02 0.0043 25.6 9.4 85 16-100 69-155 (385)
380 PRK06113 7-alpha-hydroxysteroi 48.3 1.6E+02 0.0034 24.4 8.8 55 14-68 11-66 (255)
381 PRK15438 erythronate-4-phospha 48.2 1.2E+02 0.0026 27.5 8.3 103 17-143 118-223 (378)
382 PRK12769 putative oxidoreducta 48.1 55 0.0012 32.0 6.6 51 16-66 328-396 (654)
383 PRK07200 aspartate/ornithine c 48.0 78 0.0017 29.0 7.1 45 24-68 204-254 (395)
384 PRK06198 short chain dehydroge 47.9 1.6E+02 0.0034 24.3 9.4 55 14-68 6-62 (260)
385 PRK07985 oxidoreductase; Provi 47.7 1.6E+02 0.0034 25.3 8.8 55 14-68 49-106 (294)
386 PRK07775 short chain dehydroge 47.6 1.7E+02 0.0037 24.6 9.0 55 15-69 11-66 (274)
387 cd08185 Fe-ADH1 Iron-containin 47.6 1.4E+02 0.003 27.0 8.8 90 39-134 3-96 (380)
388 TIGR03588 PseC UDP-4-keto-6-de 47.5 64 0.0014 28.9 6.6 51 17-69 46-98 (380)
389 PRK08416 7-alpha-hydroxysteroi 47.4 1.7E+02 0.0036 24.4 9.1 73 14-86 8-84 (260)
390 PRK12549 shikimate 5-dehydroge 47.2 64 0.0014 27.9 6.3 32 16-47 128-159 (284)
391 PRK08594 enoyl-(acyl carrier p 46.8 1.7E+02 0.0037 24.4 9.3 54 14-67 7-64 (257)
392 PRK09545 znuA high-affinity zi 46.8 96 0.0021 27.2 7.4 85 29-117 212-306 (311)
393 PRK14057 epimerase; Provisiona 46.5 1.8E+02 0.004 24.8 8.7 34 35-68 188-221 (254)
394 PRK07576 short chain dehydroge 46.5 1.7E+02 0.0037 24.5 8.8 55 14-68 9-64 (264)
395 PRK08017 oxidoreductase; Provi 46.4 1.7E+02 0.0036 24.1 9.4 51 16-69 4-54 (256)
396 cd08232 idonate-5-DH L-idonate 46.1 1.1E+02 0.0024 26.6 7.8 47 13-62 165-211 (339)
397 PRK15454 ethanol dehydrogenase 46.1 1E+02 0.0022 28.1 7.7 90 37-134 24-119 (395)
398 PRK06720 hypothetical protein; 45.9 1.5E+02 0.0032 23.4 9.0 32 14-45 16-47 (169)
399 PRK05717 oxidoreductase; Valid 45.9 1.7E+02 0.0037 24.2 9.3 53 14-68 10-62 (255)
400 PLN02253 xanthoxin dehydrogena 45.8 1.4E+02 0.0029 25.2 8.1 33 14-46 18-50 (280)
401 PF00391 PEP-utilizers: PEP-ut 45.8 29 0.00062 23.7 3.2 32 15-47 31-62 (80)
402 PRK08642 fabG 3-ketoacyl-(acyl 45.7 1.7E+02 0.0036 24.0 9.4 33 15-47 6-38 (253)
403 CHL00194 ycf39 Ycf39; Provisio 45.7 90 0.002 27.1 7.1 31 17-47 3-33 (317)
404 smart00829 PKS_ER Enoylreducta 45.7 1.7E+02 0.0037 24.1 9.2 53 7-62 98-150 (288)
405 PRK13982 bifunctional SbtC-lik 45.5 32 0.0007 32.2 4.3 42 22-69 280-321 (475)
406 PRK11749 dihydropyrimidine deh 45.4 1.2E+02 0.0025 28.1 8.1 55 12-67 271-331 (457)
407 cd05195 enoyl_red enoyl reduct 45.3 1.7E+02 0.0038 24.0 9.4 51 8-61 103-153 (293)
408 PTZ00075 Adenosylhomocysteinas 45.1 1E+02 0.0022 29.0 7.5 90 16-132 255-344 (476)
409 cd02000 TPP_E1_PDC_ADC_BCADC T 45.1 1.1E+02 0.0024 26.6 7.4 58 13-70 125-198 (293)
410 PTZ00345 glycerol-3-phosphate 45.1 79 0.0017 28.6 6.6 38 11-48 7-51 (365)
411 PRK12414 putative aminotransfe 44.9 1.4E+02 0.003 26.8 8.4 52 17-69 92-143 (384)
412 PRK15407 lipopolysaccharide bi 44.8 1.7E+02 0.0037 27.1 9.0 54 16-69 79-140 (438)
413 PRK01713 ornithine carbamoyltr 44.8 89 0.0019 27.8 6.9 57 10-68 153-217 (334)
414 PRK05957 aspartate aminotransf 44.7 86 0.0019 28.2 7.0 53 17-70 91-143 (389)
415 PRK07904 short chain dehydroge 44.6 1.8E+02 0.004 24.2 9.2 53 15-67 9-65 (253)
416 cd08273 MDR8 Medium chain dehy 44.6 1.5E+02 0.0033 25.4 8.4 52 9-64 135-186 (331)
417 PF13460 NAD_binding_10: NADH( 44.5 53 0.0011 25.6 5.0 47 18-69 2-48 (183)
418 PRK06463 fabG 3-ketoacyl-(acyl 44.2 1.8E+02 0.004 24.0 10.6 70 14-86 7-76 (255)
419 PRK09291 short chain dehydroge 44.1 96 0.0021 25.6 6.8 33 15-47 3-35 (257)
420 PRK08945 putative oxoacyl-(acy 44.0 1.8E+02 0.0039 23.9 9.0 35 13-47 11-45 (247)
421 PF00091 Tubulin: Tubulin/FtsZ 43.9 60 0.0013 26.7 5.4 96 99-203 92-203 (216)
422 TIGR03845 sulfopyru_alph sulfo 43.8 1.5E+02 0.0034 23.0 8.2 28 18-45 62-91 (157)
423 COG2518 Pcm Protein-L-isoaspar 43.7 1.9E+02 0.0041 24.0 8.2 107 2-130 61-171 (209)
424 cd08271 MDR5 Medium chain dehy 43.5 2E+02 0.0044 24.3 9.7 53 7-63 135-187 (325)
425 cd05313 NAD_bind_2_Glu_DH NAD( 43.4 1.7E+02 0.0037 25.0 8.1 43 4-46 27-69 (254)
426 PRK08339 short chain dehydroge 43.3 1.6E+02 0.0035 24.6 8.1 33 14-46 8-40 (263)
427 PRK02731 histidinol-phosphate 43.2 1.2E+02 0.0027 26.8 7.7 52 17-69 86-137 (367)
428 PRK05579 bifunctional phosphop 43.1 59 0.0013 29.8 5.6 35 13-47 187-237 (399)
429 PRK07062 short chain dehydroge 43.1 1.9E+02 0.0042 24.0 9.1 34 14-47 8-41 (265)
430 PLN02494 adenosylhomocysteinas 43.1 1.3E+02 0.0028 28.3 7.8 93 12-132 252-344 (477)
431 COG2085 Predicted dinucleotide 43.1 1.9E+02 0.0042 23.9 10.6 32 17-48 3-34 (211)
432 TIGR03316 ygeW probable carbam 43.0 1E+02 0.0022 27.8 7.0 44 25-68 188-237 (357)
433 PF02254 TrkA_N: TrkA-N domain 43.0 1.2E+02 0.0026 21.6 7.8 47 19-68 2-48 (116)
434 COG1010 CobJ Precorrin-3B meth 43.0 2.1E+02 0.0045 24.3 8.3 72 53-127 38-110 (249)
435 PLN02583 cinnamoyl-CoA reducta 42.8 1.9E+02 0.0042 24.8 8.7 35 13-47 5-39 (297)
436 PRK07060 short chain dehydroge 42.7 1.4E+02 0.003 24.4 7.5 53 14-69 9-62 (245)
437 PRK12747 short chain dehydroge 42.7 1.6E+02 0.0034 24.3 7.9 55 14-68 4-60 (252)
438 PRK12859 3-ketoacyl-(acyl-carr 42.7 2E+02 0.0043 23.9 9.4 55 14-68 6-74 (256)
439 PRK08251 short chain dehydroge 42.6 1.9E+02 0.0041 23.7 8.7 33 15-47 3-35 (248)
440 COG1433 Uncharacterized conser 42.6 1.4E+02 0.0031 22.3 7.4 51 27-80 54-104 (121)
441 cd08252 AL_MDR Arginate lyase 42.5 1.4E+02 0.003 25.8 7.8 47 14-63 150-197 (336)
442 PRK09242 tropinone reductase; 42.1 2E+02 0.0043 23.8 8.9 55 14-68 9-66 (257)
443 COG0836 {ManC} Mannose-1-phosp 41.9 83 0.0018 27.9 6.0 55 17-87 80-138 (333)
444 TIGR01470 cysG_Nterm siroheme 41.9 1.9E+02 0.0042 23.6 8.3 33 17-49 11-43 (205)
445 PF13380 CoA_binding_2: CoA bi 41.9 1.3E+02 0.0029 22.0 6.5 51 15-65 56-106 (116)
446 PRK12775 putative trifunctiona 41.9 3.1E+02 0.0068 28.5 11.1 112 1-131 412-528 (1006)
447 PRK07856 short chain dehydroge 41.8 1.8E+02 0.0038 24.0 8.1 34 14-47 6-39 (252)
448 PRK04148 hypothetical protein; 41.8 1.6E+02 0.0034 22.5 6.9 49 16-68 18-66 (134)
449 cd08266 Zn_ADH_like1 Alcohol d 41.6 2.2E+02 0.0048 24.2 9.6 33 9-41 162-194 (342)
450 PRK06202 hypothetical protein; 41.6 37 0.0008 28.1 3.8 38 121-158 62-99 (232)
451 PRK06947 glucose-1-dehydrogena 41.6 1.6E+02 0.0034 24.2 7.7 53 16-68 4-58 (248)
452 cd08275 MDR3 Medium chain dehy 41.5 2.2E+02 0.0049 24.3 9.2 54 7-63 132-185 (337)
453 PLN02263 serine decarboxylase 41.5 2.4E+02 0.0052 26.5 9.3 55 16-71 154-209 (470)
454 PRK12810 gltD glutamate syntha 41.5 1.6E+02 0.0034 27.5 8.3 51 16-66 144-212 (471)
455 TIGR01831 fabG_rel 3-oxoacyl-( 41.4 1.9E+02 0.0042 23.5 9.1 52 18-69 2-55 (239)
456 PRK15481 transcriptional regul 41.3 2.8E+02 0.006 25.3 10.5 81 17-101 143-226 (431)
457 PRK06200 2,3-dihydroxy-2,3-dih 41.3 2.1E+02 0.0045 23.8 8.9 51 14-67 6-57 (263)
458 cd01137 PsaA Metal binding pro 41.3 1.6E+02 0.0034 25.5 7.8 62 17-87 179-248 (287)
459 PHA02542 41 41 helicase; Provi 41.2 3.1E+02 0.0067 25.8 11.0 39 9-47 185-227 (473)
460 PLN03026 histidinol-phosphate 40.9 1.7E+02 0.0036 26.3 8.2 83 17-100 105-188 (380)
461 PRK04328 hypothetical protein; 40.8 1.2E+02 0.0026 25.6 6.8 56 8-63 17-76 (249)
462 TIGR01318 gltD_gamma_fam gluta 40.7 1.5E+02 0.0033 27.5 8.2 51 16-66 142-210 (467)
463 PF03446 NAD_binding_2: NAD bi 40.7 1.2E+02 0.0026 23.5 6.5 45 17-64 3-47 (163)
464 cd06450 DOPA_deC_like DOPA dec 40.6 1.5E+02 0.0032 25.8 7.8 53 17-69 59-124 (345)
465 PRK13984 putative oxidoreducta 40.3 1.3E+02 0.0028 29.1 7.8 53 13-66 282-352 (604)
466 KOG1198 Zinc-binding oxidoredu 40.2 1.1E+02 0.0024 27.4 6.8 53 10-65 154-206 (347)
467 PRK05852 acyl-CoA synthetase; 40.2 1.8E+02 0.0038 27.2 8.6 66 4-69 58-123 (534)
468 PRK07067 sorbitol dehydrogenas 40.1 2.1E+02 0.0046 23.6 8.9 32 15-46 7-38 (257)
469 PRK12778 putative bifunctional 40.0 1.3E+02 0.0029 29.9 8.0 54 13-67 569-628 (752)
470 PF13450 NAD_binding_8: NAD(P) 39.9 46 0.001 21.8 3.4 28 22-49 3-30 (68)
471 PRK12548 shikimate 5-dehydroge 39.9 1.7E+02 0.0038 25.2 7.9 31 17-47 128-158 (289)
472 PRK05872 short chain dehydroge 39.7 2.2E+02 0.0048 24.4 8.6 33 14-46 9-41 (296)
473 PRK07326 short chain dehydroge 39.5 2E+02 0.0044 23.2 8.3 33 14-46 6-38 (237)
474 COG0075 Serine-pyruvate aminot 39.5 2E+02 0.0043 26.3 8.3 53 17-69 58-111 (383)
475 KOG0634 Aromatic amino acid am 39.5 1.6E+02 0.0035 27.3 7.6 51 19-69 127-177 (472)
476 smart00822 PKS_KR This enzymat 39.5 1.6E+02 0.0035 22.0 8.5 52 17-68 3-59 (180)
477 PRK08159 enoyl-(acyl carrier p 39.4 2.4E+02 0.0051 23.9 9.4 77 8-86 5-85 (272)
478 PRK08114 cystathionine beta-ly 39.2 2E+02 0.0043 26.3 8.4 58 11-70 74-135 (395)
479 KOG1210 Predicted 3-ketosphing 39.2 2.5E+02 0.0055 24.9 8.5 31 17-47 36-66 (331)
480 cd08176 LPO Lactadehyde:propan 38.9 1.6E+02 0.0035 26.5 7.8 90 38-134 4-98 (377)
481 PRK08220 2,3-dihydroxybenzoate 38.7 2.2E+02 0.0047 23.3 8.4 34 14-47 8-41 (252)
482 KOG0409 Predicted dehydrogenas 38.7 47 0.001 29.2 3.9 44 22-68 42-85 (327)
483 COG2242 CobL Precorrin-6B meth 38.6 2.1E+02 0.0046 23.2 8.2 130 114-249 27-166 (187)
484 PRK01688 histidinol-phosphate 38.6 2.8E+02 0.006 24.5 10.1 53 17-70 76-129 (351)
485 PRK09754 phenylpropionate diox 38.6 1.4E+02 0.003 27.0 7.4 36 12-48 142-177 (396)
486 PRK06125 short chain dehydroge 38.5 2E+02 0.0044 23.8 8.0 33 14-46 7-39 (259)
487 cd06453 SufS_like Cysteine des 38.4 1.4E+02 0.0031 26.3 7.4 54 17-70 63-122 (373)
488 PRK05650 short chain dehydroge 38.4 2.4E+02 0.0051 23.6 8.7 52 17-68 3-55 (270)
489 PRK07370 enoyl-(acyl carrier p 38.4 2.3E+02 0.0051 23.6 8.8 72 14-86 6-84 (258)
490 smart00460 TGc Transglutaminas 38.1 49 0.0011 21.1 3.3 26 21-46 7-32 (68)
491 PLN02306 hydroxypyruvate reduc 38.1 1.8E+02 0.004 26.4 8.0 119 16-143 166-288 (386)
492 PRK14012 cysteine desulfurase; 38.1 1.6E+02 0.0035 26.5 7.8 54 17-70 68-127 (404)
493 PRK08340 glucose-1-dehydrogena 38.0 2E+02 0.0043 23.8 7.9 31 16-46 2-32 (259)
494 cd05211 NAD_bind_Glu_Leu_Phe_V 38.0 1.4E+02 0.0031 24.7 6.7 33 15-47 23-55 (217)
495 PRK06101 short chain dehydroge 38.0 2.2E+02 0.0047 23.3 8.0 47 16-65 3-49 (240)
496 cd06268 PBP1_ABC_transporter_L 37.8 2.3E+02 0.005 23.3 13.8 139 14-158 66-227 (298)
497 PRK06108 aspartate aminotransf 37.6 2.2E+02 0.0047 25.2 8.5 51 17-69 86-137 (382)
498 PRK05565 fabG 3-ketoacyl-(acyl 37.6 2.2E+02 0.0048 23.1 8.8 55 15-69 6-62 (247)
499 PRK05967 cystathionine beta-ly 37.6 2.2E+02 0.0048 26.0 8.4 54 14-69 79-136 (395)
500 PRK08248 O-acetylhomoserine am 37.5 1.6E+02 0.0034 27.3 7.6 78 17-100 81-162 (431)
No 1
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.9e-58 Score=405.04 Aligned_cols=270 Identities=92% Similarity=1.369 Sum_probs=249.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||..++++|.+.||.++||++||||||+|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.+++..+++++.+.+
T Consensus 53 ~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a 132 (322)
T PLN02565 53 MITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKA 132 (322)
T ss_pred HHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHH
Confidence 47789999999999778999999999999999999999999999999999999999999999999998754567888889
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.++.|+++||+|+.|+..||+|+++||++|+++.||+||+|+|+||+++|++.+||+.+|++|||+|||+++++
T Consensus 133 ~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~ 212 (322)
T PLN02565 133 EEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAV 212 (322)
T ss_pred HHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCcc
Confidence 99888766789999999999988899999999999997679999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+.++++.++.+++++.+..|..+..+++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 213 ~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV 292 (322)
T PLN02565 213 LSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIV 292 (322)
T ss_pred ccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEE
Confidence 88777777788999887667777778899999999999999999999999999999999999999999876645678999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcCCCCC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~~~~~ 270 (270)
+++||+|.||+++++|+.+..+.++|.+++
T Consensus 293 ~v~~d~G~ky~~~~~~~~~~~~~~~~~~~~ 322 (322)
T PLN02565 293 VIFPSFGERYLSSVLFESVKKEAENMVFEP 322 (322)
T ss_pred EEECCCccccCCchhhHHHHHHHhcCccCC
Confidence 999999999999999999999999998865
No 2
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-58 Score=392.05 Aligned_cols=249 Identities=61% Similarity=1.016 Sum_probs=236.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC-hHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG-MKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~-~~~~~~~ 79 (270)
||++|+++|+|+||. +||++||||+|++||+.|+.+|+++++|||++.+.+|+++|++|||+|+.++...+ +..+.++
T Consensus 49 mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~ 127 (300)
T COG0031 49 MIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIER 127 (300)
T ss_pred HHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHH
Confidence 789999999999997 69999999999999999999999999999999999999999999999999998444 7889999
Q ss_pred HHHHHHhCCC-ccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCC
Q 024252 80 AEEIRDKTPN-SYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 158 (270)
Q Consensus 80 a~~~~~~~~~-~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~ 158 (270)
+++++++.++ .++.+||+||.||.+||.|++.||++|+++.+|+||+++|||||++|++++||+.+|++|+++|||++|
T Consensus 128 a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S 207 (300)
T COG0031 128 AKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGS 207 (300)
T ss_pred HHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCC
Confidence 9999999887 677889999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCe
Q 024252 159 AVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKL 238 (270)
Q Consensus 159 ~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~ 238 (270)
+.+..+. .++.++||+.+++|.+++.+.+|+++.|+|+++++.+|+|+++||+++++|||+++++++++.++.. ++++
T Consensus 208 ~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~-~g~~ 285 (300)
T COG0031 208 VLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELP-AGKT 285 (300)
T ss_pred cccCCCC-CCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcC-CCCe
Confidence 9887666 8899999999999988999999999999999999999999999999999999999999999988764 6899
Q ss_pred EEEEecCCCCCCcc
Q 024252 239 IVVVFPSFGERYLS 252 (270)
Q Consensus 239 vv~i~t~gg~~~~~ 252 (270)
||+|+||+|+||++
T Consensus 286 IVti~pD~G~RYls 299 (300)
T COG0031 286 IVTILPDSGERYLS 299 (300)
T ss_pred EEEEECCCcccccC
Confidence 99999999999997
No 3
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=2e-56 Score=397.68 Aligned_cols=269 Identities=63% Similarity=1.058 Sum_probs=244.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.+.||.++||++|+||||+|+|++|+.+|++|+||||+.++..|+++|+.|||+|+.++...++...++.+
T Consensus 97 ~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a 176 (368)
T PLN02556 97 MIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKA 176 (368)
T ss_pred HHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHH
Confidence 57899999999999889999999999999999999999999999999999999999999999999998644455778888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
.+++++.++++|++||+||.++..||.++++||++|+.+.+|+||+|+|||||++|+++++|+.+|++|||+|||.+++.
T Consensus 177 ~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~ 256 (368)
T PLN02556 177 YELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNV 256 (368)
T ss_pred HHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCcc
Confidence 88888877889999999999966799999999999986689999999999999999999999999999999999999988
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..+++..+.+++++.+..|..++++++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 257 ~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV 336 (368)
T PLN02556 257 LNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIV 336 (368)
T ss_pred ccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEE
Confidence 87777777777888777667777788999999999999999999999999999999999999999988776544688999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcCCCC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~~~~ 269 (270)
+|+||+|.||+++.+|++|..+.+.|-..
T Consensus 337 ~v~~d~g~kY~~~~~~~~~~~~~~~~~~~ 365 (368)
T PLN02556 337 TVHPSFGERYLSSVLFQELRKEAENMQPV 365 (368)
T ss_pred EEECCCCcccCChhhhHHHHHHHHhcCCc
Confidence 99999999999999999999888877543
No 4
>PLN00011 cysteine synthase
Probab=100.00 E-value=4.6e-55 Score=384.81 Aligned_cols=267 Identities=69% Similarity=1.085 Sum_probs=239.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||..|+++|++.||.++||++|+||||+|+|++|+.+|++|+||||+.+++.|+++++.|||+|+.++...+.+++.+.+
T Consensus 55 ~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a 134 (323)
T PLN00011 55 MIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKA 134 (323)
T ss_pred HHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHH
Confidence 57789999999999778999999999999999999999999999999999999999999999999999754445667788
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.+++++++||+|+.++..||.++++||++|+.++||+||+|+|+|||++|+++++|+++|++|||+|||+++++
T Consensus 135 ~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~ 214 (323)
T PLN00011 135 EEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAV 214 (323)
T ss_pred HHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcc
Confidence 88888766788999999998877799999999999996689999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..+++..+.+++++.+..|..+....+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 215 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv 294 (323)
T PLN00011 215 LSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIV 294 (323)
T ss_pred cCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEE
Confidence 87777777778888877667767778899999999999999999999999999999999999999998776544678999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcCC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESMV 267 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~~ 267 (270)
+|+||+|+||+|+.+|+.+..+-.++|
T Consensus 295 ~i~~d~G~ky~~~~~~~~~~~~~~~~~ 321 (323)
T PLN00011 295 VIFPSGGERYLSTKLFESVRYEAENLP 321 (323)
T ss_pred EEECCCccccCChhhhHHHHHhhhcCC
Confidence 999999999999999997665445544
No 5
>PLN03013 cysteine synthase
Probab=100.00 E-value=5.7e-55 Score=390.41 Aligned_cols=254 Identities=72% Similarity=1.149 Sum_probs=233.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|+++||.++||++||||||+|+|++|+.+|++++||||+++++.|+++|+.|||+|+.+++..++.++++.+
T Consensus 161 ~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A 240 (429)
T PLN03013 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKA 240 (429)
T ss_pred HHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHH
Confidence 57889999999999778999999999999999999999999999999999999999999999999998755567888899
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.+++||++||+||.|+..||+|+++||++|++++||+||+|+|+||+++|+++++|+.+|++|||+|||.+++.
T Consensus 241 ~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~ 320 (429)
T PLN03013 241 EEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDI 320 (429)
T ss_pred HHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCch
Confidence 99988866789999999999977799999999999997789999999999999999999999999999999999999988
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE-
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI- 239 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v- 239 (270)
+.++++.++.++|++.+.+|+.++..++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++|
T Consensus 321 l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IV 400 (429)
T PLN03013 321 LSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIA 400 (429)
T ss_pred hhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEE
Confidence 8777777788899998887888888899999999999999999999999999999999999999999876554456765
Q ss_pred EEEecCCCCCCcchh
Q 024252 240 VVVFPSFGERYLSSV 254 (270)
Q Consensus 240 v~i~t~gg~~~~~~~ 254 (270)
++|++++|++|.+..
T Consensus 401 v~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 401 VSLFASGRDIYTPRC 415 (429)
T ss_pred EEEcCCCchhchhhh
Confidence 667788999999974
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1e-53 Score=373.21 Aligned_cols=255 Identities=65% Similarity=1.073 Sum_probs=230.3
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
+|..++++|.+.+|. +|+++|+||||+|+|++|+++|++|+||||+++++.|+++|+.+||+|+.++++.+++++.+.+
T Consensus 45 ~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a 123 (299)
T TIGR01136 45 MIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKA 123 (299)
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Confidence 467889999988875 6999999999999999999999999999999999999999999999999999754578888999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.+++++++||+|+.+++.||+++++||++|+++.||+||+|+|+||+++|++.+|++.+|.+|||+|||.++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~ 203 (299)
T TIGR01136 124 EELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPV 203 (299)
T ss_pred HHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCcc
Confidence 99888765678999999998878899999999999997679999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..+++..+.+.+++.+..|+.+.++++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv 283 (299)
T TIGR01136 204 LSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIV 283 (299)
T ss_pred ccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEE
Confidence 87666655567777776677778888999999999999999999999999999999999999999998876444689999
Q ss_pred EEecCCCCCCcchhhc
Q 024252 241 VVFPSFGERYLSSVLF 256 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~ 256 (270)
+|+||+|.||+++..|
T Consensus 284 ~i~~d~g~ky~~~~~~ 299 (299)
T TIGR01136 284 AILPDTGERYLSTGLF 299 (299)
T ss_pred EEECCCCccccCcccC
Confidence 9999999999997554
No 7
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=2.4e-53 Score=370.91 Aligned_cols=254 Identities=67% Similarity=1.085 Sum_probs=228.1
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||..|+++|.+.+|. +|+++|+||||+|+|++|+++|++|+||+|+++++.|++.|+.+||+|+.++++.++.++.+.+
T Consensus 44 ~l~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a 122 (298)
T TIGR01139 44 MIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKA 122 (298)
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHH
Confidence 467899999988875 5999999999999999999999999999999999999999999999999999754456778888
Q ss_pred HHHHHhCCC-ccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 81 EEIRDKTPN-SYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
++++++.++ +++++||+||.+++.||+++++||++|+++.||+||+|+|+||+++|++.+|+++.|++|||+|||.+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~ 202 (298)
T TIGR01139 123 EEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESP 202 (298)
T ss_pred HHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCc
Confidence 888887644 5589999999988889999999999999767999999999999999999999999999999999999998
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
++...++..+.+++++.+..|..+.+..+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++.. ++++|
T Consensus 203 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~~-~~~~v 281 (298)
T TIGR01139 203 VLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPE-PDKLI 281 (298)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhcC-CCCEE
Confidence 88766666677778877666777778889999999999999999999999999999999999999999876642 67899
Q ss_pred EEEecCCCCCCcchhhc
Q 024252 240 VVVFPSFGERYLSSVLF 256 (270)
Q Consensus 240 v~i~t~gg~~~~~~~~~ 256 (270)
|+++||+|.||+++..|
T Consensus 282 v~v~~d~G~ky~~~~~~ 298 (298)
T TIGR01139 282 VVILPSTGERYLSTPLF 298 (298)
T ss_pred EEEECCCCccccCcccC
Confidence 99999999999997543
No 8
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-55 Score=367.80 Aligned_cols=266 Identities=68% Similarity=1.117 Sum_probs=250.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHH---HH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG---AV 77 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~---~~ 77 (270)
||.+|+++|.+.||.++|+++||||+|.++|++|+..|++|+++||++.+.+|+..|++|||+|+.++....+.. +.
T Consensus 90 Mi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai 169 (362)
T KOG1252|consen 90 MIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAI 169 (362)
T ss_pred HHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999997665665 78
Q ss_pred HHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCC
Q 024252 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 157 (270)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 157 (270)
..+.++..+.++.|.++||.||.|+..||.+++.||+.|+.+++|.+|.++|||||++|+.+++|+.+|+++|++|+|..
T Consensus 170 ~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~ 249 (362)
T KOG1252|consen 170 GKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQE 249 (362)
T ss_pred HHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCc
Confidence 88999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CccccCCCCCC--cccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCC
Q 024252 158 SAVLSGGKPGP--HKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENA 235 (270)
Q Consensus 158 ~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~ 235 (270)
+..+....+.+ +.++|||.++.|..++...+|+.+.+.++|++.+.++|+.++|++++.|||++++++++++++.+..
T Consensus 250 S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~ 329 (362)
T KOG1252|consen 250 SIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENA 329 (362)
T ss_pred ceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccC
Confidence 98887777766 8999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred CCeEEEEecCCCCCCcchhhcHHHHHhhhcC
Q 024252 236 GKLIVVVFPSFGERYLSSVLFESVKKEAESM 266 (270)
Q Consensus 236 ~~~vv~i~t~gg~~~~~~~~~~~~~~~~~~~ 266 (270)
++-+|++++++|.+|+++.+||+|..+...|
T Consensus 330 ~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 330 GKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred CcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 6666665589999999999999998886654
No 9
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=3.1e-52 Score=362.45 Aligned_cols=246 Identities=46% Similarity=0.797 Sum_probs=216.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++||. +||++|+||||+|+|++|+++|++|+||||+.+++.|++.|+.|||+|+.++...+++++.+.+
T Consensus 50 ~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a 128 (296)
T PRK11761 50 MIVQAEKRGEIKPGD-TLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLA 128 (296)
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Confidence 477899999999885 6999999999999999999999999999999999999999999999999999754678888888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
+++.++. +++|++||+|+.++..||+|+++||++|+++.+|+||+|+|+||+++|++++||+++|++|||+|||.++++
T Consensus 129 ~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~ 207 (296)
T PRK11761 129 LQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSS 207 (296)
T ss_pred HHHHhcc-CCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCc
Confidence 8887776 788999999999888899999999999997679999999999999999999999999999999999998876
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+.+ +.+......+..++...+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++ .++++||
T Consensus 208 i~g-------~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~--~~~~~vV 278 (296)
T PRK11761 208 IPG-------IRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE--NPNAVIV 278 (296)
T ss_pred CcC-------CCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH--CCCCeEE
Confidence 632 1111122234445567889999999999999999999999999999999999999998765 3578999
Q ss_pred EEecCCCCCCcchhhcH
Q 024252 241 VVFPSFGERYLSSVLFE 257 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~ 257 (270)
+|+||+|.||+++..|+
T Consensus 279 ~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 279 AIICDRGDRYLSTGVFP 295 (296)
T ss_pred EEECCCCcccCChhccc
Confidence 99999999999985554
No 10
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=4.2e-52 Score=367.64 Aligned_cols=260 Identities=45% Similarity=0.724 Sum_probs=222.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-----C-hH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-----G-MK 74 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~-----~-~~ 74 (270)
+|.+|+++|.++||. +||++|+||||+|+|++|+++|++|+||+|+.+++.|+++++.|||+|+.+++.. + .+
T Consensus 51 ~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~ 129 (330)
T PRK10717 51 IIWDAEKRGLLKPGG-TIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVK 129 (330)
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHH
Confidence 467899999998874 6999999999999999999999999999999999999999999999999998631 1 12
Q ss_pred HHHHHHHHHHHhC-CCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEE
Q 024252 75 GAVQKAEEIRDKT-PNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 153 (270)
Q Consensus 75 ~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV 153 (270)
.+.+.++++.++. .+++|++||+||.++..||.++++||++|++..||+||+|+|+||+++|++++|+++.|++||++|
T Consensus 130 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~V 209 (330)
T PRK10717 130 GAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLA 209 (330)
T ss_pred HHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 2344445554443 268899999999886789999999999999767999999999999999999999999999999999
Q ss_pred ecCCCcccc---CCC---CCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHH
Q 024252 154 EPVESAVLS---GGK---PGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 227 (270)
Q Consensus 154 ~~~~~~~~~---~~~---~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~ 227 (270)
||++++... .++ ...+.+++++.+..++.+....+|+++.|+|+|+++++++|++++|+++||+||++++++++
T Consensus 210 ep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~ 289 (330)
T PRK10717 210 DPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALR 289 (330)
T ss_pred cCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHH
Confidence 999985432 122 23456778887766666666778999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 228 IAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 228 ~~~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
+.++. .++++||+|+||+|+||++.++.|+|...
T Consensus 290 l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~ 323 (330)
T PRK10717 290 LAREL-GPGHTIVTILCDSGERYQSKLFNPDFLRE 323 (330)
T ss_pred HHHhc-CCCCEEEEEECCCchhhcccccCHHHHHh
Confidence 87653 46789999999999999999888888764
No 11
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=1.9e-51 Score=356.72 Aligned_cols=245 Identities=44% Similarity=0.814 Sum_probs=215.8
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++||. +||++|+||||+|+|++|+++|++|+||+|++.++.|++.|+.|||+|+.++...+++++.+.+
T Consensus 46 ~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a 124 (290)
T TIGR01138 46 MIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLA 124 (290)
T ss_pred HHHHHHHcCCCCCCC-EEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Confidence 477899999999885 6999999999999999999999999999999999999999999999999998754578888889
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++. +.+|++||+|+.++..||+++++||++|++++||+||+|+|+||+++|++.+||+++|++|||+|||.+++.
T Consensus 125 ~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~ 203 (290)
T TIGR01138 125 LELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSS 203 (290)
T ss_pred HHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Confidence 9998886 446889999999977789999999999997679999999999999999999999999999999999999876
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+.+ +.+++.+..|..+....+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. ++++||
T Consensus 204 ~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~--~~~~vv 274 (290)
T TIGR01138 204 IPG-------IRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL--PDAVVV 274 (290)
T ss_pred ccC-------CCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC--CCCeEE
Confidence 532 12233333444456677899999999999999999999999999999999999999987653 578999
Q ss_pred EEecCCCCCCcchhhc
Q 024252 241 VVFPSFGERYLSSVLF 256 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~ 256 (270)
+|+||+|.||+++.+|
T Consensus 275 ~v~~d~g~ky~~~~~~ 290 (290)
T TIGR01138 275 AIICDRGDRYLSTGVF 290 (290)
T ss_pred EEECCCCccccCcccC
Confidence 9999999999997443
No 12
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.6e-51 Score=368.15 Aligned_cols=260 Identities=33% Similarity=0.534 Sum_probs=220.1
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC-----CCChH-
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-----ARGMK- 74 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~-----~~~~~- 74 (270)
||.+|+++|+++||. +|+++||||||+++|++|+++|++|+||||+++++.|++.|+.|||+|+.+++ .+++.
T Consensus 91 ~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~ 169 (423)
T PLN02356 91 IIEEALESGQLFPGG-VVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVN 169 (423)
T ss_pred HHHHHHhCCccCCCC-EEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHH
Confidence 578899999998875 58889999999999999999999999999999999999999999999999964 12221
Q ss_pred HHH---HHHHHHHHh--------------------------------CCCccccCCCCCCCchhhhhhchHHHHHHhhCC
Q 024252 75 GAV---QKAEEIRDK--------------------------------TPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 119 (270)
Q Consensus 75 ~~~---~~a~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~ 119 (270)
.+. +.+.+++++ .++.+|++||+|+.++..|+..+|+||++|+++
T Consensus 170 ~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g 249 (423)
T PLN02356 170 IARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQG 249 (423)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCC
Confidence 111 233444332 146789999999998777666669999999976
Q ss_pred CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc-------------CCC----CCCcccccCCCCCCccc
Q 024252 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS-------------GGK----PGPHKIQGIGAGFIPGV 182 (270)
Q Consensus 120 ~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~-------------~~~----~~~~~~~gl~~~~~~~~ 182 (270)
.||+||+|+|||||++|+++++|+++|++||++|||.+++.+. .++ +.++.++|++.+..|..
T Consensus 250 ~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~ 329 (423)
T PLN02356 250 NLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQN 329 (423)
T ss_pred CCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChh
Confidence 8999999999999999999999999999999999999876331 122 12467889988877888
Q ss_pred cccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 183 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 183 ~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
+....+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. .++++||+|+||+|.||++++++++|..+
T Consensus 330 ~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G~kyl~~~~~~~w~~~ 408 (423)
T PLN02356 330 FLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFHDPQYLSQ 408 (423)
T ss_pred HhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHh-CCCCeEEEEECCCCcchhhhhcCHHHHHh
Confidence 88889999999999999999999999999999999999999999987653 36889999999999999999888877765
No 13
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=3.9e-51 Score=355.91 Aligned_cols=249 Identities=62% Similarity=1.027 Sum_probs=221.3
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--ChHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR--GMKGAVQK 79 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~--~~~~~~~~ 79 (270)
|..|.++|.+++|. +|+++|+||||+|+|++|+++|++|+||+|+++++.|+++++.+||+|+.++... +++++.+.
T Consensus 41 l~~a~~~g~~~~~~-~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~ 119 (291)
T cd01561 41 IEDAEKRGLLKPGT-TIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAK 119 (291)
T ss_pred HHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHH
Confidence 66788899887774 6999999999999999999999999999999999999999999999999999742 34778888
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
+++++++.++++|++||+||.++..+++|+++||++|++..||+||+|+|+||+++|++.+|+++.|.++||+|||.+++
T Consensus 120 a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~ 199 (291)
T cd01561 120 ARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSV 199 (291)
T ss_pred HHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCc
Confidence 88888776578999999999984434459999999999767999999999999999999999999999999999999998
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
++.......+.+++++.+..++.+.+.++|+++.|+|+|++++++.|++++|+++||++|+++++++++.++.. ++++|
T Consensus 200 ~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~-~~~~v 278 (291)
T cd01561 200 LFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG-PGKTI 278 (291)
T ss_pred ccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcC-CCCeE
Confidence 87544445667788887766777777899999999999999999999999999999999999999999877653 67899
Q ss_pred EEEecCCCCCCcc
Q 024252 240 VVVFPSFGERYLS 252 (270)
Q Consensus 240 v~i~t~gg~~~~~ 252 (270)
|+|+||+|.||++
T Consensus 279 v~v~~~~g~ky~~ 291 (291)
T cd01561 279 VTILPDSGERYLS 291 (291)
T ss_pred EEEECCCccccCC
Confidence 9999999999975
No 14
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=8.6e-51 Score=374.29 Aligned_cols=260 Identities=43% Similarity=0.713 Sum_probs=225.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChH---HHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK---GAV 77 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~---~~~ 77 (270)
||.+|+++|.+++| ++||++|+||||+|+|++|+++|++|+||+|+++++.|+..++.|||+|+.+++...++ ...
T Consensus 49 ~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~ 127 (454)
T TIGR01137 49 MIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHI 127 (454)
T ss_pred HHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHH
Confidence 47789999999998 46999999999999999999999999999999999999999999999999998642232 235
Q ss_pred HHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCC
Q 024252 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 157 (270)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 157 (270)
+.+.++.++.++.+|++||+|+.++..||.++|+||++|+++.||+||+|+|||||++|++.++|+.+|.+||++|||++
T Consensus 128 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~ 207 (454)
T TIGR01137 128 GVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEG 207 (454)
T ss_pred HHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 56777777654678889999999977899999999999997679999999999999999999999999999999999998
Q ss_pred CccccCCC------CCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhc
Q 024252 158 SAVLSGGK------PGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKR 231 (270)
Q Consensus 158 ~~~~~~~~------~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~ 231 (270)
++.. .+. ...+.+++++.+..|+.+.++++|+++.|+|+|++++++.|++++|+++||+||++++++++++++
T Consensus 208 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~ 286 (454)
T TIGR01137 208 SILA-QPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAED 286 (454)
T ss_pred Cccc-CCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHh
Confidence 8633 221 113456777766566677788899999999999999999999999999999999999999998774
Q ss_pred CCCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 232 PENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 232 ~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
...++++||+++||+|.||++++++++|...
T Consensus 287 ~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~ 317 (454)
T TIGR01137 287 ELTEDQVIVVLLPDSIRNYMTKFLNDEWMKD 317 (454)
T ss_pred hcCCCCEEEEEECCCCccccCcccChHHHHh
Confidence 2246789999999999999999888887653
No 15
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=349.44 Aligned_cols=230 Identities=24% Similarity=0.327 Sum_probs=207.6
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
.||++|+||||+++|++|+++|+|++||||.++|..|++.++.|||+|++++. +|+++.+.++++++++ ++.|++||
T Consensus 76 gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pf 152 (347)
T COG1171 76 GVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPF 152 (347)
T ss_pred ceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCC
Confidence 59999999999999999999999999999999999999999999999999995 6899999999999998 89999999
Q ss_pred CCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CC-CC-----
Q 024252 97 ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GG-KP----- 166 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~-~~----- 166 (270)
++|+. ++||+|+++||++|++..||+||||+|+||+++|++.++|.+.|++|||||||++++++. .| .+
T Consensus 153 D~p~v-iAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~ 231 (347)
T COG1171 153 DDPDV-IAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPD 231 (347)
T ss_pred CCcce-eecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCC
Confidence 99998 899999999999999655799999999999999999999999999999999999998775 34 22
Q ss_pred CCcccccCCCC---CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 167 GPHKIQGIGAG---FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 167 ~~~~~~gl~~~---~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
..+.++|+++. ..++.+.++++|+++.|+|+|+.++|+++++++++++||+++++++++++...+. .++++|++|+
T Consensus 232 ~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~il 310 (347)
T COG1171 232 VGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVVIL 310 (347)
T ss_pred CCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEEEe
Confidence 23456777653 3567888999999999999999999999999999999999999999999887664 4677788888
Q ss_pred cCCCCCCcc
Q 024252 244 PSFGERYLS 252 (270)
Q Consensus 244 t~gg~~~~~ 252 (270)
+|||.++.
T Consensus 311 -SGgN~d~~ 318 (347)
T COG1171 311 -SGGNIDFE 318 (347)
T ss_pred -cCCCCCHH
Confidence 77886665
No 16
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.1e-47 Score=336.91 Aligned_cols=248 Identities=21% Similarity=0.230 Sum_probs=205.8
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|+ .+ .++||++|+||||+|+|++|+++|++|+||+|+.+++.|++.|+.|||+|+.+++. .++++.+.+
T Consensus 39 ~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~ 115 (316)
T cd06448 39 LCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLR 115 (316)
T ss_pred HHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHH
Confidence 4677888887 34 45799999999999999999999999999999999999999999999999999863 266667777
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC--CCCEEEEecCCchhHHHHHHHhhhcC-CCeEEEEEecCC
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG--KIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVE 157 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~--~~d~iv~~vG~Gg~~aGi~~~~~~~~-~~~~vigV~~~~ 157 (270)
++++++.++++|++||+||.+ +.||.|+++||++|+++ .||+||+|+|+||+++|++++|++.+ |+++||+|||++
T Consensus 116 ~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g 194 (316)
T cd06448 116 EELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEG 194 (316)
T ss_pred HHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 787776557899999999988 78999999999999975 59999999999999999999999996 999999999999
Q ss_pred Ccccc----CCCC-----CCcccccCCCCCCcc---ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHH
Q 024252 158 SAVLS----GGKP-----GPHKIQGIGAGFIPG---VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 225 (270)
Q Consensus 158 ~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~ 225 (270)
++++. .+++ ..+..+|++.+..+. ...++..|+++.|+|+|+++++++|++++||++||+||++++++
T Consensus 195 ~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~ 274 (316)
T cd06448 195 AHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVV 274 (316)
T ss_pred ChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHH
Confidence 97764 2332 124455776654432 33356789999999999999999999999999999999999999
Q ss_pred HHH-----hhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 226 IQI-----AKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 226 ~~~-----~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
++. .+++. .++++||+|+||+...+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~ 307 (316)
T cd06448 275 YSGKILDLQLEVLLTPLDNVVVVVCGGSNITLE 307 (316)
T ss_pred HhCcchhhhcccccCCCCeEEEEECCCCCCCHH
Confidence 853 22222 4788999999775443444
No 17
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.1e-47 Score=355.10 Aligned_cols=231 Identities=22% Similarity=0.274 Sum_probs=202.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
.||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++||
T Consensus 159 GVV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pf 235 (591)
T PLN02550 159 GVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPF 235 (591)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCC
Confidence 39999999999999999999999999999999999999999999999999985 6889999999998886 77899999
Q ss_pred CCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCC-----
Q 024252 97 ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG----- 167 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~----- 167 (270)
+||.+ ++||+|+|+||++|+++.+|+||+|+|+||+++|++.++|.++|++|||||||++++++. .+++.
T Consensus 236 ddp~v-iaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~ 314 (591)
T PLN02550 236 DHPDV-IAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQV 314 (591)
T ss_pred CChHH-HHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCC
Confidence 99987 799999999999999656999999999999999999999999999999999999998774 34331
Q ss_pred CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEec
Q 024252 168 PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 244 (270)
Q Consensus 168 ~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t 244 (270)
.+..+|+.... .++.+.++++|+++.|+|+|+.++++++++++|+++||++|+++||++++.++...++++||+|+
T Consensus 315 ~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vl- 393 (591)
T PLN02550 315 GGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAIT- 393 (591)
T ss_pred CCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEe-
Confidence 23445655432 23445678999999999999999999999999999999999999999998765556788999999
Q ss_pred CCCCCCcc
Q 024252 245 SFGERYLS 252 (270)
Q Consensus 245 ~gg~~~~~ 252 (270)
+|||-+++
T Consensus 394 sGgNid~~ 401 (591)
T PLN02550 394 SGANMNFD 401 (591)
T ss_pred cCCCCCHH
Confidence 55675555
No 18
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.6e-47 Score=352.05 Aligned_cols=231 Identities=25% Similarity=0.328 Sum_probs=203.3
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
.||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+.+++ +++++.+.+.+++++. +++|++||
T Consensus 87 GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pf 163 (521)
T PRK12483 87 GVITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPF 163 (521)
T ss_pred cEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCC
Confidence 49999999999999999999999999999999999999999999999999985 6899999999998886 78999999
Q ss_pred CCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----C
Q 024252 97 ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----G 167 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~-----~ 167 (270)
+||.+ ++||+|+++||++|+++.||+||+|+|+||+++|++.++|.++|++|||||||++++++. .+++ .
T Consensus 164 dd~~v-iaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~ 242 (521)
T PRK12483 164 DDPDV-IAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQV 242 (521)
T ss_pred CChHH-HHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCC
Confidence 99998 889999999999999657999999999999999999999999999999999999998764 2332 1
Q ss_pred CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEec
Q 024252 168 PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 244 (270)
Q Consensus 168 ~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t 244 (270)
.+.++|++... .++.+.++++|+++.|+|+|+.+++++|++++|+++||++|++++|++++.++...++++||+|+
T Consensus 243 ~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~Il- 321 (521)
T PRK12483 243 GLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAID- 321 (521)
T ss_pred CceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEe-
Confidence 23456665432 23456678999999999999999999999999999999999999999998766555688999998
Q ss_pred CCCCCCcc
Q 024252 245 SFGERYLS 252 (270)
Q Consensus 245 ~gg~~~~~ 252 (270)
+|||-+++
T Consensus 322 sGgNid~~ 329 (521)
T PRK12483 322 SGANVNFD 329 (521)
T ss_pred CCCCCCHH
Confidence 55775554
No 19
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=5e-47 Score=336.68 Aligned_cols=240 Identities=22% Similarity=0.229 Sum_probs=206.4
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
+|.+|.+.| .++||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+
T Consensus 95 ~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a 167 (347)
T PRK08329 95 TVAKLKEEG-----INEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEA 167 (347)
T ss_pred HHHHHHHcC-----CCEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHH
Confidence 355677766 4579999999999999999999999999999999999999999999999999986 366777788
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcC------CCeEEEEEe
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVE 154 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~------~~~~vigV~ 154 (270)
++++++. +++|++++.||.+ +.||+|+++||++|++ .||+||+|+|+||+++|++++|+++. +.+|+|+||
T Consensus 168 ~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq 244 (347)
T PRK08329 168 VKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQ 244 (347)
T ss_pred HHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEe
Confidence 8887775 6788899999987 7899999999999995 79999999999999999999999974 568999999
Q ss_pred cCCCccccC-CCCCCcccccCCCCCCcc-----ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHH
Q 024252 155 PVESAVLSG-GKPGPHKIQGIGAGFIPG-----VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQI 228 (270)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~gl~~~~~~~-----~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~ 228 (270)
|.+++++.. .+...+.+++++.+..+. .+.+++.+.++.|+|+|+++++++|++ +||++||+||+++++++++
T Consensus 245 ~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l 323 (347)
T PRK08329 245 AEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKL 323 (347)
T ss_pred cCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHH
Confidence 999877653 233455667776554332 233567788999999999999999986 7999999999999999999
Q ss_pred hhcCC-CCCCeEEEEecCCCCCCc
Q 024252 229 AKRPE-NAGKLIVVVFPSFGERYL 251 (270)
Q Consensus 229 ~~~~~-~~~~~vv~i~t~gg~~~~ 251 (270)
.+++. .++++||+++||+|.|++
T Consensus 324 ~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 324 LEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHhCCCCCCCeEEEEeCCCCccCC
Confidence 98876 478899999999999975
No 20
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=4.4e-47 Score=341.85 Aligned_cols=245 Identities=24% Similarity=0.343 Sum_probs=206.6
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.++.++++. ++||++|+||||+++|++|+++|++|+||||+++++.|+++++.|||+|+.++. +++++.+.+.
T Consensus 39 i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~ 112 (380)
T TIGR01127 39 IANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFAT 112 (380)
T ss_pred HHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHH
Confidence 4556666643 369999999999999999999999999999999999999999999999999984 6889999999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. +++|++||+|+.+ +.||+|+++||++|++ .||+||+|+|+||+++|++.++|.+.|++|||||||.+++++
T Consensus 113 ~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~~-~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~ 189 (380)
T TIGR01127 113 SLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDIP-DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSM 189 (380)
T ss_pred HHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhCC-CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 998876 7899999999987 7999999999999994 799999999999999999999999999999999999999876
Q ss_pred c----CCCCC-----CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHh
Q 024252 162 S----GGKPG-----PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 229 (270)
Q Consensus 162 ~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~ 229 (270)
. .+++. .+..+|++... .++.+.++++|+++.|+|+|+.+++++|++++|+++||++|++++++++..
T Consensus 190 ~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~ 269 (380)
T TIGR01127 190 YESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQK 269 (380)
T ss_pred HHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCc
Confidence 4 34332 23445665332 233455789999999999999999999999999999999999999998643
Q ss_pred hcCCCCCCeEEEEecCCCCCCcchhhcHHHH
Q 024252 230 KRPENAGKLIVVVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 230 ~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~ 260 (270)
.. .++++||+|+|| |+.+.+ .++.+.
T Consensus 270 ~~--~~~~~vv~i~sG-Gn~d~d--~l~~vi 295 (380)
T TIGR01127 270 VD--VKGKKIAVVLSG-GNIDLN--LLNKII 295 (380)
T ss_pred cc--cCCCeEEEEeCC-CCCCHH--HHHHHH
Confidence 22 367899999965 785544 454443
No 21
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1e-46 Score=346.99 Aligned_cols=232 Identities=24% Similarity=0.339 Sum_probs=203.6
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++|
T Consensus 66 ~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p 142 (499)
T TIGR01124 66 RGVIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHP 142 (499)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCC
Confidence 469999999999999999999999999999999999999999999999999984 6889999999998886 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP----- 166 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~----- 166 (270)
|+||.+ ++||+|+|+||++|++..+|+||+|+|+|||++|++.++|..+|++|||||||.+++++. .+++
T Consensus 143 ~~~~~~-i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~ 221 (499)
T TIGR01124 143 FDDPLV-IAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQ 221 (499)
T ss_pred CCChHH-HHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCC
Confidence 999987 899999999999999667999999999999999999999999999999999999998764 2332
Q ss_pred CCcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 167 GPHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 167 ~~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
..+.++|++... .++.+.++++|+++.|+|+|+.++++++++++|+++||++|+++++++++.++...++++||+|+
T Consensus 222 ~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~ 301 (499)
T TIGR01124 222 VGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAIL 301 (499)
T ss_pred CCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEE
Confidence 123446665433 24456678999999999999999999999999999999999999999998776555688999999
Q ss_pred cCCCCCCcc
Q 024252 244 PSFGERYLS 252 (270)
Q Consensus 244 t~gg~~~~~ 252 (270)
|| ||-+++
T Consensus 302 sG-~n~~~~ 309 (499)
T TIGR01124 302 SG-ANMNFH 309 (499)
T ss_pred CC-CCCCHH
Confidence 55 664454
No 22
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=6.8e-47 Score=336.11 Aligned_cols=244 Identities=23% Similarity=0.309 Sum_probs=202.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
||.+|.++| .++||++|+||||+|+|++|+++|++|+||+|++ .+..|+.+++.|||+|+.+++ +++++.+.
T Consensus 66 ~i~~a~~~g-----~~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~ 138 (351)
T PRK06352 66 AVAKAKEEG-----AEAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKS 138 (351)
T ss_pred HHHHHHHCC-----CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHH
Confidence 456777776 3579999999999999999999999999999997 589999999999999999996 57888888
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCC-----eEEEEEe
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-----IKLYGVE 154 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~-----~~vigV~ 154 (270)
+++++++. ++++++ +.||.+ +.||+|+++||++|++..||+||+|+|+||+++|++++||+++|. +|||+||
T Consensus 139 a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Ve 215 (351)
T PRK06352 139 VRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFE 215 (351)
T ss_pred HHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 88888775 666666 458887 689999999999999767999999999999999999999998876 8999999
Q ss_pred cCCCccccCCCCCC---cccccCCCCC-CccccccccC----CcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHH
Q 024252 155 PVESAVLSGGKPGP---HKIQGIGAGF-IPGVLDVNLL----DETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAI 226 (270)
Q Consensus 155 ~~~~~~~~~~~~~~---~~~~gl~~~~-~~~~~~~~~~----~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~ 226 (270)
|++++++..+++.. +..+++..+. ..+....+.+ +.++.|+|+|+++++++|++++||++||+||+++++++
T Consensus 216 p~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~ 295 (351)
T PRK06352 216 AEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVI 295 (351)
T ss_pred eCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHH
Confidence 99998776555431 1223333221 1112222233 34899999999999999999999999999999999999
Q ss_pred HHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 227 QIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 227 ~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
++.+++. .++++||+++||+|+||+++.
T Consensus 296 ~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 296 QHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred HHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 9887543 467899999999999999875
No 23
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-46 Score=338.46 Aligned_cols=236 Identities=25% Similarity=0.302 Sum_probs=200.5
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++|
T Consensus 69 ~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p 145 (403)
T PRK08526 69 HGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHP 145 (403)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCC
Confidence 469999999999999999999999999999999999999999999999999985 6899999999998876 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP----- 166 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~----- 166 (270)
|+|+.+ ++||+|+++||++|++ .||+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++
T Consensus 146 ~~~~~~-i~G~gtia~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~ 223 (403)
T PRK08526 146 FEDEEV-MAGQGTIALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKS 223 (403)
T ss_pred CCCHHH-HhhhHHHHHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCC
Confidence 999987 8999999999999994 6999999999999999999999999999999999999998763 2332
Q ss_pred CCcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 167 GPHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 167 ~~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
..+..+|++... .++...++++|+++.|+|+|+.+++++|++++|+++||++++++++++..... ..++++||+|+
T Consensus 224 ~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~-~~~~~~Vv~il 302 (403)
T PRK08526 224 VRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKID-LKKGKKIGVVL 302 (403)
T ss_pred CCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccc-cccCCeEEEEE
Confidence 234456665432 12233457899999999999999999999999999999999999999752211 13578999999
Q ss_pred cCCCCCCcchhhcHHHH
Q 024252 244 PSFGERYLSSVLFESVK 260 (270)
Q Consensus 244 t~gg~~~~~~~~~~~~~ 260 (270)
+|||.+++ .+.++.
T Consensus 303 -sGGnid~~--~~~~i~ 316 (403)
T PRK08526 303 -SGGNIDVQ--MLNIII 316 (403)
T ss_pred -CCCCCCHH--HHHHHH
Confidence 45896665 444443
No 24
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=1.9e-46 Score=339.42 Aligned_cols=245 Identities=20% Similarity=0.231 Sum_probs=206.9
Q ss_pred HHHcCCCCCCC----------------cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 5 AEEKGLIRPGE----------------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 5 a~~~g~l~~g~----------------~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
++++|.+.||. ++||++||||||+|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.++
T Consensus 131 a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~ 210 (441)
T PRK02991 131 ALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYE 210 (441)
T ss_pred HHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC
Confidence 66888888774 47999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC--------CCCEEEEecCCchhHHHHHHH
Q 024252 69 PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKY 140 (270)
Q Consensus 69 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~--------~~d~iv~~vG~Gg~~aGi~~~ 140 (270)
+ +|+++.+.+++++++.+++||+++++++.. ++||+|+++||++|+++ .||+||+|+|+||+++|++.+
T Consensus 211 ~--~~~~a~~~A~~la~~~~~~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~ 287 (441)
T PRK02991 211 G--DYGVAVEEGRKAAESDPNCYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFG 287 (441)
T ss_pred C--CHHHHHHHHHHHHHhcCCeEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHH
Confidence 5 688999999999887656889999977766 89999999999999963 267999999999999999999
Q ss_pred hhhc-CCCeEEEEEecCCCcccc----CCCC-----------CCcccccCCCCCC---ccccccccCCcEEEcCHHHHHH
Q 024252 141 LKEH-NPEIKLYGVEPVESAVLS----GGKP-----------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIE 201 (270)
Q Consensus 141 ~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~ 201 (270)
||++ .|++|||+|||.+++++. .+++ ..+.++|++.+.. ++.+.++++|+++.|+|+|+++
T Consensus 288 lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~ 367 (441)
T PRK02991 288 LKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYR 367 (441)
T ss_pred HHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHH
Confidence 9997 688999999999997653 2332 1234566665432 2344567899999999999999
Q ss_pred HHHHHHHHcCCeechhHHHHHHHHHHHhhcCC-------C---CCCeEEEEecCCCCCCcc
Q 024252 202 TAKLLALKEGLLVGISSGAATAAAIQIAKRPE-------N---AGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 202 a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~-------~---~~~~vv~i~t~gg~~~~~ 252 (270)
+++.|++++|+++||++|+++++++++.++.. . ++++||++.|+|..+..+
T Consensus 368 a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~ 428 (441)
T PRK02991 368 LLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEE 428 (441)
T ss_pred HHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHH
Confidence 99999999999999999999999987654321 1 578999999887765444
No 25
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-46 Score=332.11 Aligned_cols=239 Identities=19% Similarity=0.225 Sum_probs=199.3
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|.++|.+. ++||++|+||||+++|++|+++|++|+||||+++++.|+++++.|||+|+.++. .+++.+.+
T Consensus 61 ~v~~a~~~g~~~---~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a 134 (338)
T PRK06608 61 HLLELKEQGKLP---DKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKA 134 (338)
T ss_pred HHHHhhhhcCcC---CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHH
Confidence 467788888764 469999999999999999999999999999999999999999999999999974 35666666
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++ .++ +++||++||+|+.+ ++||+++++||++|++..||+||+|+|+||+++|++.++|...+++|||+|||.++++
T Consensus 135 ~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~ 211 (338)
T PRK06608 135 KE-DEE-QGFYYIHPSDSDST-IAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNAND 211 (338)
T ss_pred HH-HHh-CCCEEcCCCCCHHH-hccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChH
Confidence 66 444 47899999999988 6899999999999997679999999999999999999999999999999999999975
Q ss_pred cc----CCCC------CCcccccCCCCCCc---cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHH
Q 024252 161 LS----GGKP------GPHKIQGIGAGFIP---GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 227 (270)
Q Consensus 161 ~~----~~~~------~~~~~~gl~~~~~~---~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~ 227 (270)
+. ++++ ..+..++++.+... +.+. +.+|+++.|+|+|++++++.|++++|+++||+||++++++++
T Consensus 212 ~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~-~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~ 290 (338)
T PRK06608 212 AYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYL-KKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVN 290 (338)
T ss_pred HHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHh
Confidence 42 3332 12345566543221 2222 347999999999999999999999999999999999999998
Q ss_pred HhhcCCCCCCeEEEEecCCCCCCc
Q 024252 228 IAKRPENAGKLIVVVFPSFGERYL 251 (270)
Q Consensus 228 ~~~~~~~~~~~vv~i~t~gg~~~~ 251 (270)
+.++. .++++||+|+|| |+++.
T Consensus 291 ~~~~~-~~~~~Vv~v~tg-g~~d~ 312 (338)
T PRK06608 291 WLKTQ-SKPQKLLVILSG-GNIDP 312 (338)
T ss_pred hchhh-cCCCeEEEEeCC-CccCH
Confidence 76543 367899999987 65433
No 26
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=2.1e-46 Score=329.79 Aligned_cols=238 Identities=24% Similarity=0.296 Sum_probs=200.9
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|..+.+.|..+ .||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.++. +|+++.+.++
T Consensus 72 l~~a~~~~~~~----~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~ 145 (349)
T PRK08813 72 LLAGLERGDER----PVICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFAR 145 (349)
T ss_pred HHHHHHcCCCC----eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHH
Confidence 56677777543 49999999999999999999999999999999999999999999999999975 6899999999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. +++|++||+||.+ ++||+|+++||++|. ||+||+|+|+||+++|++.++|+ +.+|||+|||++++++
T Consensus 146 ~la~~~-g~~~v~~~~np~~-i~G~~Tig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~ 218 (349)
T PRK08813 146 ELADQN-GYRFLSAFDDPDV-IAGQGTVGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSM 218 (349)
T ss_pred HHHHhc-CCEEcCccCChHH-HHHHHHHHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchH
Confidence 998886 8899999999998 789999999999874 79999999999999999999996 5699999999999765
Q ss_pred c---CCCC-----CCcccccCCCC---CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhh
Q 024252 162 S---GGKP-----GPHKIQGIGAG---FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK 230 (270)
Q Consensus 162 ~---~~~~-----~~~~~~gl~~~---~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~ 230 (270)
. .+++ ..+.++|++.. ..++.+.++++|+++.|+|+|+.+++++|++++|+++||++|+++++++++
T Consensus 219 ~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~-- 296 (349)
T PRK08813 219 ARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV-- 296 (349)
T ss_pred HHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh--
Confidence 3 1221 23456676643 234556678899999999999999999999999999999999999998763
Q ss_pred cCCCCCCeEEEEecCCCCCCcchhhcHHHHH
Q 024252 231 RPENAGKLIVVVFPSFGERYLSSVLFESVKK 261 (270)
Q Consensus 231 ~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~ 261 (270)
++++|++|+ +|||-+++ .+.++..
T Consensus 297 ----~~~~v~~vl-sGgN~d~~--~~~~~~~ 320 (349)
T PRK08813 297 ----SGKRKCAVV-SGGNIDAT--VLATLLS 320 (349)
T ss_pred ----CCCCEEEEE-CCCCCCHH--HHHHHHH
Confidence 467888888 56785554 4444443
No 27
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.9e-46 Score=345.31 Aligned_cols=233 Identities=23% Similarity=0.333 Sum_probs=203.3
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+.++. +|+++.+.+.+++++. +++|++
T Consensus 68 ~~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~ 144 (504)
T PRK09224 68 ARGVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIH 144 (504)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeC
Confidence 3469999999999999999999999999999999999999999999999999985 6899999999998885 789999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCC---
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG--- 167 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~--- 167 (270)
||+||.+ ++|++|+++||++|++..||+||+|+|+|||++|++.++|.+.|++|||||||.+++++. .+++.
T Consensus 145 ~f~~~~~-i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~ 223 (504)
T PRK09224 145 PFDDPDV-IAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLP 223 (504)
T ss_pred CCCCcHH-HHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCC
Confidence 9999988 799999999999999656999999999999999999999999999999999999998764 23332
Q ss_pred --CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 168 --PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 168 --~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
.+.+++++... .++.+.++++|+++.|+|+|+.+++++|++++|+++||++|++++|++++.++...++++||+|
T Consensus 224 ~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i 303 (504)
T PRK09224 224 QVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAI 303 (504)
T ss_pred CCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEE
Confidence 22345655432 2345668899999999999999999999999999999999999999999877655568899999
Q ss_pred ecCCCCCCcc
Q 024252 243 FPSFGERYLS 252 (270)
Q Consensus 243 ~t~gg~~~~~ 252 (270)
+|| ||-+++
T Consensus 304 ~sG-~n~~~~ 312 (504)
T PRK09224 304 LSG-ANMNFD 312 (504)
T ss_pred ECC-CCCCHH
Confidence 965 664444
No 28
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=2.4e-46 Score=339.64 Aligned_cols=245 Identities=20% Similarity=0.254 Sum_probs=207.5
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|..|.+.| .++|+++|+||||+|+|++|+++|++|+||+|++++..|+.+++.|||+|+.+++ +++++.+.+.
T Consensus 129 v~~A~~~g-----~~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~ 201 (421)
T PRK07591 129 LTAARELG-----FTTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCS 201 (421)
T ss_pred HHHHHHcC-----CCEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHH
Confidence 55677776 4579999999999999999999999999999999999999999999999999996 5788888999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCC-CCEEEEecCCchhHHHHHHHhhhc-------CCCeEEEEE
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK-IDALVSGIGTGGTVTGAGKYLKEH-------NPEIKLYGV 153 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~-~d~iv~~vG~Gg~~aGi~~~~~~~-------~~~~~vigV 153 (270)
+++++.+++++++++.||.. ++|++|+++||++|+++. ||+||+|+|+||+++|++++|+++ .+.+|||+|
T Consensus 202 ~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~V 280 (421)
T PRK07591 202 ELANEHEGWGFVNINLRPYY-AEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGA 280 (421)
T ss_pred HHHHhcCCEEEecCCCCccc-ccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEE
Confidence 98887657888898888887 789999999999999754 999999999999999999999997 578999999
Q ss_pred ecCCCcccc----CCCC------CCcccccCCCCCCc-----cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhH
Q 024252 154 EPVESAVLS----GGKP------GPHKIQGIGAGFIP-----GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISS 218 (270)
Q Consensus 154 ~~~~~~~~~----~~~~------~~~~~~gl~~~~~~-----~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~s 218 (270)
||++++++. .+.. ..+..+++..+... ....+++.+.++.|+|+|++++++.|++++||++||++
T Consensus 281 q~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epss 360 (421)
T PRK07591 281 QAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAG 360 (421)
T ss_pred ecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchH
Confidence 999987664 2221 11223344322211 12235677889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 219 GAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 219 g~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++++++++.+++. .++++||+++||+|+||++.+
T Consensus 361 aaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~~ 397 (421)
T PRK07591 361 GVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEAV 397 (421)
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHHH
Confidence 999999999988765 478899999999999998753
No 29
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=3.5e-46 Score=336.68 Aligned_cols=244 Identities=24% Similarity=0.221 Sum_probs=205.6
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|++.| .++||++||||||+|+|++|+++|++|+||+|+++++.|+.+++.|||+|+.+++ +++++.+.+
T Consensus 118 ~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a 190 (394)
T PRK08197 118 GVSRAKELG-----VKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIV 190 (394)
T ss_pred HHHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHH
Confidence 356677666 4679999999999999999999999999999999999999999999999999996 577888888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhc-------CCCeEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEH-------NPEIKLYG 152 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~-------~~~~~vig 152 (270)
++++++. ++|+++++.||.+ ++|++|+++||++|+++ .||+||+|+|+||+++|++++|+++ .+.+|+|+
T Consensus 191 ~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~ 268 (394)
T PRK08197 191 AEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVA 268 (394)
T ss_pred HHHHHhc-CcccccCCCCccc-hhcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEE
Confidence 8888776 7899999999998 78999999999999975 4999999999999999999999997 37899999
Q ss_pred EecCCCcccc----CCCCC-------CcccccCCCCCCc-c----ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech
Q 024252 153 VEPVESAVLS----GGKPG-------PHKIQGIGAGFIP-G----VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI 216 (270)
Q Consensus 153 V~~~~~~~~~----~~~~~-------~~~~~gl~~~~~~-~----~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep 216 (270)
|||++++++. .++.. .+..+++..+... . ...+++.+.++.|+|+|+++++++|++++||++||
T Consensus 269 Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vep 348 (394)
T PRK08197 269 VQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACP 348 (394)
T ss_pred EEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECc
Confidence 9999997763 22211 1222333322111 1 11235677899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcch
Q 024252 217 SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 217 ~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~ 253 (270)
+||+++++++++.+++. .++++||+++||+|.||.++
T Consensus 349 ssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 349 EGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred hHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhh
Confidence 99999999999988765 46789999999999999875
No 30
>PLN02970 serine racemase
Probab=100.00 E-value=1.9e-46 Score=330.83 Aligned_cols=242 Identities=20% Similarity=0.283 Sum_probs=199.5
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|..+.+++. .++||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.|||+|+.++. +++.+.+.++
T Consensus 66 i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~ 139 (328)
T PLN02970 66 IFSLSDDQA----EKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAA 139 (328)
T ss_pred HHHhhHhhc----CCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHH
Confidence 444554443 3469999999999999999999999999999999999999999999999999996 5778888888
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. +++|++||+|+.+ +.||+|+++||++|++ .||+||+|+|+||+++|++++||+.+|++|||+|||.+++++
T Consensus 140 ~la~~~-g~~~~~~~~n~~~-~~g~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~ 216 (328)
T PLN02970 140 RVQQET-GAVLIHPYNDGRV-ISGQGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDA 216 (328)
T ss_pred HHHHhc-CCEEeCCCCCcch-hhehHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHH
Confidence 888774 8899999999987 6899999999999995 699999999999999999999999999999999999999866
Q ss_pred c----CCCC-----CCcccccCCCCC--CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhh
Q 024252 162 S----GGKP-----GPHKIQGIGAGF--IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK 230 (270)
Q Consensus 162 ~----~~~~-----~~~~~~gl~~~~--~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~ 230 (270)
. .+++ ..+..++++.+. .++...++++|+++.|+|+|+++++++|++++|+++||++|++++++++...
T Consensus 217 ~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~ 296 (328)
T PLN02970 217 AQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSF 296 (328)
T ss_pred HHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcc
Confidence 3 2322 123344554321 1233456789999999999999999999999999999999999999876433
Q ss_pred c-CC-CC-CCeEEEEecCCCCCCcch
Q 024252 231 R-PE-NA-GKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 231 ~-~~-~~-~~~vv~i~t~gg~~~~~~ 253 (270)
+ +. .+ +++||+++|| |+.+++.
T Consensus 297 ~~~~~~~~~~~vv~v~~G-gn~~~~~ 321 (328)
T PLN02970 297 RSNPAWKGCKNVGIVLSG-GNVDLGV 321 (328)
T ss_pred cccccccCCCeEEEEECC-CCCCHHH
Confidence 2 22 23 4788889855 7866553
No 31
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=3e-46 Score=338.22 Aligned_cols=228 Identities=24% Similarity=0.327 Sum_probs=197.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
.||++|+||||+|+|++|+++|++|+||||+.++..|++.++.|||+|+.+++ +++++.+.+++++++. +++|++||
T Consensus 75 gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~ 151 (406)
T PRK06382 75 GVITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAF 151 (406)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCcc
Confidence 49999999999999999999999999999999999999999999999999985 5888999999998886 78999999
Q ss_pred CCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----C
Q 024252 97 ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----G 167 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~-----~ 167 (270)
+|+.+ +.||+|+++||++|++ .||+||+|+|+||+++|++.++|..+|++|||||||.+++++. .+++ .
T Consensus 152 ~~~~~-i~g~~t~~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~ 229 (406)
T PRK06382 152 NDRWV-ISGQGTIGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSG 229 (406)
T ss_pred CChHH-HHHHHHHHHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCC
Confidence 99987 7899999999999994 7999999999999999999999999999999999999998762 3333 2
Q ss_pred CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEec
Q 024252 168 PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 244 (270)
Q Consensus 168 ~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t 244 (270)
.+.++|++.+. .++.+.++++|+++.|+|+|+.++++.|++++|+++||++|+++++++... ...++++||+|+|
T Consensus 230 ~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~~--~~~~~~~Vv~i~s 307 (406)
T PRK06382 230 VSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGK--VDVKGKKVAIVVS 307 (406)
T ss_pred CCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhcc--ccCCCCEEEEEeC
Confidence 34566776543 234456789999999999999999999999999999999999999876432 1235788999995
Q ss_pred CCCCCCcc
Q 024252 245 SFGERYLS 252 (270)
Q Consensus 245 ~gg~~~~~ 252 (270)
||+.+++
T Consensus 308 -GGn~d~~ 314 (406)
T PRK06382 308 -GGNINPL 314 (406)
T ss_pred -CCCCCHH
Confidence 6885444
No 32
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=3.3e-46 Score=328.87 Aligned_cols=230 Identities=21% Similarity=0.293 Sum_probs=195.5
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+|+|++|+.+|++|++|||+++++.|+++++.|||+|+.++. +++++.+.+++++++. +++|++
T Consensus 72 ~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~ 148 (321)
T PRK07048 72 RAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIP 148 (321)
T ss_pred CCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEEC
Confidence 3469999999999999999999999999999999999999999999999999995 4677778888888876 789999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc----cCCCCC---
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL----SGGKPG--- 167 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~----~~~~~~--- 167 (270)
||+|+.+ +.||+|+++||++|++ .||+||+|+|+||+++|++.++|+++|++|||+|||++++++ ..++..
T Consensus 149 ~~~~~~~-~~g~~t~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~ 226 (321)
T PRK07048 149 PYDHPHV-IAGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHID 226 (321)
T ss_pred CCCCcch-hhccchHHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCC
Confidence 9999987 7899999999999995 799999999999999999999999999999999999998754 233321
Q ss_pred --CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 168 --PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 168 --~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
.+..+++.... ..+++..+++|+++.|+|+|+++++++|++++|+++||++++++++++++.++ .++++||+|
T Consensus 227 ~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~--~~~~~vv~i 304 (321)
T PRK07048 227 TPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP--LKGKRVGVI 304 (321)
T ss_pred CCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh--cCCCeEEEE
Confidence 12233332211 12234467899999999999999999999999999999999999999987554 367899999
Q ss_pred ecCCCCCCcc
Q 024252 243 FPSFGERYLS 252 (270)
Q Consensus 243 ~t~gg~~~~~ 252 (270)
+| ||+.+++
T Consensus 305 ~t-GGn~~~~ 313 (321)
T PRK07048 305 IS-GGNVDLA 313 (321)
T ss_pred eC-CCCCCHH
Confidence 96 5786555
No 33
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.3e-45 Score=328.18 Aligned_cols=246 Identities=23% Similarity=0.294 Sum_probs=203.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~-~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
||.+|.++| .++||++||||||+|+|++|+++|++|+||||+.. ++.|+++++.+||+|+.+++ +++++.+.
T Consensus 66 ~i~~a~~~g-----~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~ 138 (352)
T PRK06721 66 AVAKAKEEG-----SEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKA 138 (352)
T ss_pred HHHHHHHCC-----CCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH
Confidence 356677776 35799999999999999999999999999999974 78999999999999999995 57888888
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHH----HHhhhcC-CCeEEEEEe
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAG----KYLKEHN-PEIKLYGVE 154 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~----~~~~~~~-~~~~vigV~ 154 (270)
+++++++. ++++++ +.||.+ ..||.|+++||++|++..||+||+|+|+||+++|++ ..+|..+ |.+|||+||
T Consensus 139 a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVe 215 (352)
T PRK06721 139 VRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFE 215 (352)
T ss_pred HHHHHHhC-Cceecc-CCCchh-hhhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEe
Confidence 88888876 566665 557877 689999999999999767999999999999999854 4555554 889999999
Q ss_pred cCCCccccCCCCC---CcccccCCCCCCccc------cccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHH
Q 024252 155 PVESAVLSGGKPG---PHKIQGIGAGFIPGV------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 225 (270)
Q Consensus 155 ~~~~~~~~~~~~~---~~~~~gl~~~~~~~~------~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~ 225 (270)
|++++++..++.. .+..++++.+. |.. ..+.++|+++.|+|+|+++++++|++++|+++||++|++++++
T Consensus 216 p~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~ 294 (352)
T PRK06721 216 AEGAAAIVKGHVIDEPETIATAIRIGN-PASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGV 294 (352)
T ss_pred cCCCChHhhCCcCCCCCceeeccccCC-CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHH
Confidence 9999877655431 22334554432 211 1245789999999999999999999999999999999999999
Q ss_pred HHHhhcCC-CCCCeEEEEecCCCCCCcchhhcH
Q 024252 226 IQIAKRPE-NAGKLIVVVFPSFGERYLSSVLFE 257 (270)
Q Consensus 226 ~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~~~~ 257 (270)
+++.+++. .++++||+++||+|.||++....+
T Consensus 295 ~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~~ 327 (352)
T PRK06721 295 MKHVQSGKIKKGETVVAVLTGNGLKDPDIAISS 327 (352)
T ss_pred HHHHHcCCCCCCCeEEEEeCCCCcCchHHHhhh
Confidence 99887654 467899999999999999875433
No 34
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4.8e-46 Score=337.99 Aligned_cols=232 Identities=23% Similarity=0.333 Sum_probs=199.0
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC-CCCChHHHHHHHHHHHHhCCCccccC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-PARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
++||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.+. ...+++++.+.+.+++++. +++|++
T Consensus 74 ~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~ 152 (420)
T PRK08639 74 AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIP 152 (420)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccC
Confidence 46999999999999999999999999999999999999999999999754321 1246899999999998886 789999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCC--CCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC--
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGK--IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-- 166 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~--~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~-- 166 (270)
||+||.+ ++||+|+++||++|+++. ||+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++
T Consensus 153 ~~~~~~~-~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~ 231 (420)
T PRK08639 153 PFDDPDV-IAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVT 231 (420)
T ss_pred CCCChhH-hcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCcee
Confidence 9999987 789999999999999755 999999999999999999999999999999999999998764 2332
Q ss_pred ---CCcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 167 ---GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 167 ---~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
..+.++|++.... ++.+.++++|+++.|+|+|+.+++++|++++|+++||++|+++++++++.++ .++++||
T Consensus 232 ~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~--~~~~~vv 309 (420)
T PRK08639 232 LEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDE--IKGKTVV 309 (420)
T ss_pred CCCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEE
Confidence 2344567765432 3345578899999999999999999999999999999999999999886543 3688999
Q ss_pred EEecCCCCCCcc
Q 024252 241 VVFPSFGERYLS 252 (270)
Q Consensus 241 ~i~t~gg~~~~~ 252 (270)
+|+| ||+.+++
T Consensus 310 ~v~s-Ggn~d~~ 320 (420)
T PRK08639 310 CVIS-GGNNDIE 320 (420)
T ss_pred EEeC-CCCCCHH
Confidence 9995 5886655
No 35
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=5.4e-46 Score=337.13 Aligned_cols=230 Identities=26% Similarity=0.394 Sum_probs=199.6
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+++|++|+++|++|+||||++++..|+++++.|||+|+.++. +++++.+.+.+++++. +++|++
T Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~ 146 (404)
T PRK08198 70 ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVH 146 (404)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecC
Confidence 4579999999999999999999999999999999999999999999999999984 6889999999998886 789999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCC---
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG--- 167 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~--- 167 (270)
||+||.+ +.||+|+|+||++|++ ++|+||+|+|+||+++|++.+||+.+|++|||||||.+++++. .+++.
T Consensus 147 ~~~~~~~-~~g~~t~a~EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~ 224 (404)
T PRK08198 147 PFDDPDV-IAGQGTIGLEILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELE 224 (404)
T ss_pred CCCCccH-HHHHHHHHHHHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecC
Confidence 9999987 7899999999999994 6999999999999999999999999999999999999998763 23332
Q ss_pred --CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 168 --PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 168 --~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
.+..++++... .++.+.++++|+++.|+|+|+.+++++|++++|+++||++|+++++++++... .++++||++
T Consensus 225 ~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~~--~~~~~vv~v 302 (404)
T PRK08198 225 SVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKLD--VKGKKVVAV 302 (404)
T ss_pred CCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchhh--cCCCeEEEE
Confidence 22344554322 23445578999999999999999999999999999999999999999886522 467899999
Q ss_pred ecCCCCCCcc
Q 024252 243 FPSFGERYLS 252 (270)
Q Consensus 243 ~t~gg~~~~~ 252 (270)
+|+ |+.+++
T Consensus 303 l~g-gn~~~~ 311 (404)
T PRK08198 303 LSG-GNIDVL 311 (404)
T ss_pred ECC-CCCCHH
Confidence 965 776655
No 36
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-46 Score=329.09 Aligned_cols=245 Identities=22% Similarity=0.276 Sum_probs=204.1
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.++.++|...+ .||++|+||||+|+|++|+++|++|+||||++.++.|+++++.|||+|+.+++ +++++.+.+.
T Consensus 60 l~~a~~~~~~~~---~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~ 134 (322)
T PRK06110 60 FDRLARRGPRVR---GVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAA 134 (322)
T ss_pred HHHhhhhcCCCc---eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHH
Confidence 566776775554 49999999999999999999999999999999999999999999999999974 6888888899
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. ++||++|| ||.+ +.||+|+++||++|++ .+|+||+|+|+||+++|++.++++.+|++|||+|||.+++++
T Consensus 135 ~~~~~~-~~~~~~~~-~~~~-~~G~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~ 210 (322)
T PRK06110 135 RLAAER-GLHMVPSF-HPDL-VRGVATYALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAY 210 (322)
T ss_pred HHHHhc-CCEEcCCC-CChH-HhccchHHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHH
Confidence 988876 78999999 5665 6899999999999995 699999999999999999999999999999999999999876
Q ss_pred c----CCCCC-----CcccccCCCCCC-c--cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHh
Q 024252 162 S----GGKPG-----PHKIQGIGAGFI-P--GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 229 (270)
Q Consensus 162 ~----~~~~~-----~~~~~gl~~~~~-~--~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~ 229 (270)
. .+++. .+..++++.... | +.+.++++|+++.|+|+|+++++++|++++|+++||++++++++++++.
T Consensus 211 ~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~ 290 (322)
T PRK06110 211 ALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQER 290 (322)
T ss_pred HHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhCh
Confidence 3 33322 233345443221 2 2233588999999999999999999999999999999999999999865
Q ss_pred hcCCCCCCeEEEEecCCCCCCcchhhcHHHH
Q 024252 230 KRPENAGKLIVVVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 230 ~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~ 260 (270)
++ .++++||+|+|| |+.+++ .|.++.
T Consensus 291 ~~--~~~~~Vv~i~tG-gn~d~~--~~~~~~ 316 (322)
T PRK06110 291 ER--LAGKRVGLVLSG-GNIDRA--VFARVL 316 (322)
T ss_pred hh--hCCCcEEEEECC-CCCCHH--HHHHHH
Confidence 43 367899999966 887665 444443
No 37
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=5.5e-46 Score=327.35 Aligned_cols=248 Identities=21% Similarity=0.291 Sum_probs=202.8
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.++.++|.. ++||++|+||||+|+|++|+++|++|+||+|+++++.|++.|+.|||+|+.++. +++++.+.+
T Consensus 57 ~i~~a~~~~~~----~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a 130 (322)
T PRK07476 57 ALLSLSAQERA----RGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEV 130 (322)
T ss_pred HHHhhhhhhhC----CeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHH
Confidence 35666776642 249999999999999999999999999999999999999999999999999985 578888888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
.++.++. +++|++||+||.+ +.||+|+++||++|++ .+|+||+|+|+||+++|++.+||++.|++|||+|||+++++
T Consensus 131 ~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~ 207 (322)
T PRK07476 131 ERLVREE-GLTMVPPFDDPRI-IAGQGTIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAA 207 (322)
T ss_pred HHHHHhc-CCEEeCCCCCcce-eechhHHHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchH
Confidence 8888776 7799999999998 7899999999999995 69999999999999999999999999999999999998875
Q ss_pred cc----CCCC-----CCcccccCCCCC-----CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHH
Q 024252 161 LS----GGKP-----GPHKIQGIGAGF-----IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAI 226 (270)
Q Consensus 161 ~~----~~~~-----~~~~~~gl~~~~-----~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~ 226 (270)
+. .+++ ..+..+++..+. .+..+.+.++|+++.|+|+|+++++++|++++|+++||++++++++++
T Consensus 208 ~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~ 287 (322)
T PRK07476 208 MHASLAAGRPVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALL 287 (322)
T ss_pred HHHHHHcCCceeCCCCCCccccccccccCCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHH
Confidence 53 2322 122334442221 233455678999999999999999999999999999999999999998
Q ss_pred HHhhcCCCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 227 QIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 227 ~~~~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
+.. ...++++||+++|++ + +|...+++++.+
T Consensus 288 ~~~--~~~~~~~Vvvi~tGg-~--~~~~~~~~~~~~ 318 (322)
T PRK07476 288 AGK--IAARDGPIVVVVSGA-N--IDMELHRRIING 318 (322)
T ss_pred hCC--cccCCCcEEEEECCC-C--CCHHHHHHHHhh
Confidence 421 112348899999764 5 344456665544
No 38
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-46 Score=326.35 Aligned_cols=227 Identities=28% Similarity=0.385 Sum_probs=197.1
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++||++|+||||+|+|++|+++|++|+||||..+++.|++.++.+||+|+.+++ +++++...+++++++. +++|++|
T Consensus 69 ~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~ 145 (317)
T PRK06815 69 QGVITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISP 145 (317)
T ss_pred ceEEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecC
Confidence 469999999999999999999999999999999999999999999999999996 4778888888888775 7889999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccccC----CCC-----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG----GKP----- 166 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~~----~~~----- 166 (270)
|+||.+ +.||+++++||++|++ .||+||+|+|+||+++|++.+|++++|++|||||||++++++.. +++
T Consensus 146 ~~~~~~-~~g~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~ 223 (317)
T PRK06815 146 YNDPQV-IAGQGTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAE 223 (317)
T ss_pred CCChhh-hcchhHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCC
Confidence 999987 6899999999999995 69999999999999999999999999999999999999987642 232
Q ss_pred CCcccccCCCCCCc----cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 167 GPHKIQGIGAGFIP----GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 167 ~~~~~~gl~~~~~~----~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
..+.+++++.+..| +.+.++++|+++.|+|+|+++++++|++++||++||++|+++++++++.++ .++++||+|
T Consensus 224 ~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~--~~~~~vv~i 301 (317)
T PRK06815 224 QPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPR--YQGKKVAVV 301 (317)
T ss_pred CCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchh--cCCCcEEEE
Confidence 12345555433222 234568899999999999999999999999999999999999999987655 367899999
Q ss_pred ecCCCCC
Q 024252 243 FPSFGER 249 (270)
Q Consensus 243 ~t~gg~~ 249 (270)
+||++.+
T Consensus 302 ~tG~~~~ 308 (317)
T PRK06815 302 LCGKNIV 308 (317)
T ss_pred ECCCCCC
Confidence 9887653
No 39
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1.6e-45 Score=324.77 Aligned_cols=236 Identities=24% Similarity=0.339 Sum_probs=197.7
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++|+++|+||||+|+|++|+++|++|+||||++.++.|+++++.|||+|+.+++ +++++.+.+++++++. +++|++|
T Consensus 76 ~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~ 152 (333)
T PRK08638 76 KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPP 152 (333)
T ss_pred CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCc
Confidence 469999999999999999999999999999999999999999999999999984 5788888999998886 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCCCc--
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPGPH-- 169 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~~~-- 169 (270)
|+||.+ +.||+++++||++|+ ++||+||+|+|+||+++|++.+||+.+|++|||+|||.+++++. .+++...
T Consensus 153 ~~~~~~-~~g~~t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~ 230 (333)
T PRK08638 153 YDDPKV-IAGQGTIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRT 230 (333)
T ss_pred CCCcch-hccccHHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCC
Confidence 999988 789999999999999 46999999999999999999999999999999999999987643 3443322
Q ss_pred ---ccccCCCCCCccccc----cccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 170 ---KIQGIGAGFIPGVLD----VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 170 ---~~~gl~~~~~~~~~~----~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
..++++.. .|..+. ++++|+++.|+|+|+++++++|++++|+++||++|++++++.....+...++++||+|
T Consensus 231 ~~ti~~gl~~~-~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v 309 (333)
T PRK08638 231 TGTLADGCDVS-RPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAI 309 (333)
T ss_pred CCCeeccccCC-CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEE
Confidence 22343322 233332 5789999999999999999999999999999998888888765322222467889999
Q ss_pred ecCCCCCCcchhhcHHHH
Q 024252 243 FPSFGERYLSSVLFESVK 260 (270)
Q Consensus 243 ~t~gg~~~~~~~~~~~~~ 260 (270)
+| ||+.+++ .++++.
T Consensus 310 ~~-Ggn~~~~--~~~~~~ 324 (333)
T PRK08638 310 IS-GGNVDLS--RVSQIT 324 (333)
T ss_pred EC-CCCCCHH--HHHHHH
Confidence 96 5898777 344443
No 40
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=2.4e-46 Score=338.76 Aligned_cols=229 Identities=24% Similarity=0.325 Sum_probs=200.6
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
+.||++|+||||+|+|++|+++|++|+||||+.+++.|+++++.|||+|+.+++ +++++.+.+++++++. +++|++|
T Consensus 72 ~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~ 148 (403)
T PRK07334 72 RGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHP 148 (403)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCC
Confidence 359999999999999999999999999999999999999999999999999984 6888999999998875 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccccC---CCC----CC
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG---GKP----GP 168 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~~---~~~----~~ 168 (270)
|+||.+ +.||+|+++||++|+ +.||+||+|+|+|||++|+++++|+++|++||++|||++++++.. +.. ..
T Consensus 149 ~~~~~~-~~g~~t~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~ 226 (403)
T PRK07334 149 YDDPAV-IAGQGTVALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGS 226 (403)
T ss_pred CCCHHH-HHhHHHHHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCC
Confidence 999987 799999999999999 479999999999999999999999999999999999999987642 211 23
Q ss_pred cccccCCCC---CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecC
Q 024252 169 HKIQGIGAG---FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 245 (270)
Q Consensus 169 ~~~~gl~~~---~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~ 245 (270)
+.+++++.+ ..|+.+.+.++|+++.|+|+|+++++++|++++|+++||++|+++++++++.++ .++++||+++||
T Consensus 227 ~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~--~~~~~vv~i~~g 304 (403)
T PRK07334 227 TIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER--FRGRKVGLVLSG 304 (403)
T ss_pred CccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh--cCCCeEEEEECC
Confidence 456777643 345566778999999999999999999999999999999999999999876543 367899999977
Q ss_pred CCCCCcc
Q 024252 246 FGERYLS 252 (270)
Q Consensus 246 gg~~~~~ 252 (270)
|+.+.+
T Consensus 305 -gn~d~~ 310 (403)
T PRK07334 305 -GNIDTR 310 (403)
T ss_pred -CCCCHH
Confidence 565444
No 41
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.2e-45 Score=333.87 Aligned_cols=230 Identities=21% Similarity=0.286 Sum_probs=198.5
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE---EEeCCCCChHHHHHHHHHHHHhCCCccc
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL---VLTDPARGMKGAVQKAEEIRDKTPNSYV 92 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (270)
++||++|+||||+++|++|+++|++|+||||+.+++.|++.++.|||+| +.++ .+++++.+.+.+++++. +++|
T Consensus 65 ~gvv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~ 141 (409)
T TIGR02079 65 KGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTF 141 (409)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEE
Confidence 3599999999999999999999999999999999999999999999974 3444 36889999999998886 7899
Q ss_pred cCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC--
Q 024252 93 LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-- 166 (270)
Q Consensus 93 ~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~-- 166 (270)
++||+||.+ +.||+|+++||++|+++.||+||+|+|+||+++|++.++|+++|++|||||||++++++. .+++
T Consensus 142 ~~~~~~~~~-~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~ 220 (409)
T TIGR02079 142 IPPFDDPRI-IEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVT 220 (409)
T ss_pred eCCCCCHhH-hhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcee
Confidence 999999987 789999999999999767999999999999999999999999999999999999998764 2433
Q ss_pred ---CCcccccCCCCCCc---cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 167 ---GPHKIQGIGAGFIP---GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 167 ---~~~~~~gl~~~~~~---~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
..+.++|++...++ +.+.++++|+++.|+|+|+.+++++|++++|+++||++|+++|+++++.++ .++++||
T Consensus 221 ~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~--~~~~~Vv 298 (409)
T TIGR02079 221 LDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE--IKGKTVV 298 (409)
T ss_pred cCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEE
Confidence 12445666654322 234567899999999999999999999999999999999999999887543 4688999
Q ss_pred EEecCCCCCCcc
Q 024252 241 VVFPSFGERYLS 252 (270)
Q Consensus 241 ~i~t~gg~~~~~ 252 (270)
+|+| |||.+++
T Consensus 299 ~ils-Ggn~d~~ 309 (409)
T TIGR02079 299 CVVS-GGNNDIE 309 (409)
T ss_pred EEEC-CCCCCHH
Confidence 9995 5886555
No 42
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=3.5e-45 Score=326.03 Aligned_cols=243 Identities=23% Similarity=0.306 Sum_probs=203.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
||.+++++| .++||++||||||+++|++|+++|++|+||||+. .++.|++.++.|||+|+.+++ +++++.+.
T Consensus 69 ~l~~a~~~g-----~~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~ 141 (353)
T PRK07409 69 AVTKAKEEG-----AKAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEI 141 (353)
T ss_pred HHHHHHHCC-----CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHH
Confidence 466777766 3579999999999999999999999999999997 588999999999999999996 57888888
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEE
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGV 153 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV 153 (270)
++++.++. +++++++ .||.+ +.||.|+++||++|++..||+||+|+|+||+++|++.+|++..+ .+|||+|
T Consensus 142 a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigV 218 (353)
T PRK07409 142 VRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGF 218 (353)
T ss_pred HHHHHHhc-CceecCC-CCchh-hhhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEE
Confidence 99888776 4667665 58887 68999999999999976799999999999999999999998743 4899999
Q ss_pred ecCCCccccCCCCCC---cccccCCCCCCcccc------ccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHH
Q 024252 154 EPVESAVLSGGKPGP---HKIQGIGAGFIPGVL------DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAA 224 (270)
Q Consensus 154 ~~~~~~~~~~~~~~~---~~~~gl~~~~~~~~~------~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa 224 (270)
||.+++++..+++.. +..++++.+. |..+ .+++.++++.|+|+|+++++++|++++|+++||++|+++++
T Consensus 219 ep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa 297 (353)
T PRK07409 219 QAAGAAPIVRGEPVKNPETIATAIRIGN-PASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAG 297 (353)
T ss_pred ecCCCChHhhCCcCCCCcceeeeeecCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHH
Confidence 999998776554322 2233443322 2222 23456789999999999999999999999999999999999
Q ss_pred HHHHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 225 AIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 225 ~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
++++.+++. .++++||+++||+|+||++++
T Consensus 298 ~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~ 328 (353)
T PRK07409 298 LLKAIRAGKIPEGSTVVCTLTGNGLKDPDTA 328 (353)
T ss_pred HHHHHHcCCCCCCCcEEEEecCccccchHHH
Confidence 999877643 467899999999999999864
No 43
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=7.6e-45 Score=327.76 Aligned_cols=242 Identities=21% Similarity=0.231 Sum_probs=206.1
Q ss_pred HHHHcCCCCCCC----------------cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 4 DAEEKGLIRPGE----------------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 4 ~a~~~g~l~~g~----------------~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
.|+++|.++||. ++||++||||||+++|++|+.+|++|+||||+++++.|++.++.|||+|+.+
T Consensus 125 ~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~ 204 (431)
T TIGR02035 125 LALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEY 204 (431)
T ss_pred HHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence 478999998874 5799999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC--------CCCEEEEecCCchhHHHHHH
Q 024252 68 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGK 139 (270)
Q Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~--------~~d~iv~~vG~Gg~~aGi~~ 139 (270)
++ +|+++.+.+++++++.++.|+++++ |+.++++||+|+++||++|+++ .||+|++|+|+||+++|++.
T Consensus 205 ~~--~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~ 281 (431)
T TIGR02035 205 ES--DYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAF 281 (431)
T ss_pred CC--CHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHH
Confidence 96 6899999999998887667787774 4455689999999999999952 47899999999999999999
Q ss_pred Hhhhc-CCCeEEEEEecCCCcccc----CCCC-----------CCcccccCCCCCCc---cccccccCCcEEEcCHHHHH
Q 024252 140 YLKEH-NPEIKLYGVEPVESAVLS----GGKP-----------GPHKIQGIGAGFIP---GVLDVNLLDETVQISSEEAI 200 (270)
Q Consensus 140 ~~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~~---~~~~~~~~~~~~~V~~~e~~ 200 (270)
+||++ +|++|||+|||.+++++. .++. ..+.++||+.+..+ +.+.++++|+++.|+|+|+.
T Consensus 282 ~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~ 361 (431)
T TIGR02035 282 GLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLY 361 (431)
T ss_pred HHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHH
Confidence 99997 789999999999997642 2321 13456777765422 23345689999999999999
Q ss_pred HHHHHHHHHcCCeechhHHHHHHHHHHHhhcC-----------C-CCCCeEEEEecCCCC
Q 024252 201 ETAKLLALKEGLLVGISSGAATAAAIQIAKRP-----------E-NAGKLIVVVFPSFGE 248 (270)
Q Consensus 201 ~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~-----------~-~~~~~vv~i~t~gg~ 248 (270)
+++++|++++|+++||+||++++++.++.+.. . .++.+.+++.|||+.
T Consensus 362 ~a~~~L~~~egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~ 421 (431)
T TIGR02035 362 DLLRILAESEGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGM 421 (431)
T ss_pred HHHHHHHHHcCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCC
Confidence 99999999999999999999999999887652 0 146789999988876
No 44
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-45 Score=314.58 Aligned_cols=231 Identities=23% Similarity=0.290 Sum_probs=204.5
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
..||++|.||||+|+|++|+++|+|++||||..+|..|++.++.+||+|++.+. +++++...+.++++++ ++.|++|
T Consensus 115 ~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~p 191 (457)
T KOG1250|consen 115 AGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPP 191 (457)
T ss_pred CceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCC
Confidence 469999999999999999999999999999999999999999999999999995 7899999999999997 8999999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCC----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG---- 167 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~---- 167 (270)
||+|+. ++|++|++.||.+|++.++++|+||||+||+++||+.++++..|+++|||||++++.++. .+++.
T Consensus 192 fDhP~I-~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~ 270 (457)
T KOG1250|consen 192 FDHPDI-WAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPK 270 (457)
T ss_pred CCCchh-hcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeeccc
Confidence 999998 799999999999999766679999999999999999999999999999999999998764 34442
Q ss_pred -CcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 168 -PHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 168 -~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
.+..+|++...+ ++.+.+.++|+++.|+|+|+..++.++.+++..++||++|+++++++.. .....+++++|.++
T Consensus 271 i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~il 349 (457)
T KOG1250|consen 271 ITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVSIL 349 (457)
T ss_pred ccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEeec
Confidence 344567765432 4556788999999999999999999999999999999999999999987 44447899999999
Q ss_pred cCCCCCCcc
Q 024252 244 PSFGERYLS 252 (270)
Q Consensus 244 t~gg~~~~~ 252 (270)
+ |++-+++
T Consensus 350 s-G~n~~~~ 357 (457)
T KOG1250|consen 350 S-GGNIDFD 357 (457)
T ss_pred c-cCCCCcc
Confidence 4 4554444
No 45
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1e-44 Score=320.11 Aligned_cols=240 Identities=27% Similarity=0.319 Sum_probs=202.6
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+++++| .++||++|+||||+|+|++|+.+|++|++|+|+++++.|+++|+.+||+|+.++. +++++.+.+
T Consensus 61 ~l~~a~~~g-----~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a 133 (324)
T cd01563 61 AVSKAKELG-----VKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLV 133 (324)
T ss_pred HHHHHHHcC-----CCEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHH
Confidence 356777766 4579999999999999999999999999999999999999999999999999986 578888888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcC------CCeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~------~~~~vigV 153 (270)
.+++++. ++|++||+|+.+ +.||.+++.||++|+++ .||+||+|+|+|||++|++.+||.+. ++++||+|
T Consensus 134 ~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigv 210 (324)
T cd01563 134 RELAEEN--WIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGV 210 (324)
T ss_pred HHHHHhc--CeeccCCCCcce-ecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEE
Confidence 8888775 788999999998 68999999999999963 69999999999999999999999875 57999999
Q ss_pred ecCCCcccc----CCCC-------CCcccccCCCCCCc-c----ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechh
Q 024252 154 EPVESAVLS----GGKP-------GPHKIQGIGAGFIP-G----VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS 217 (270)
Q Consensus 154 ~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~-~----~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~ 217 (270)
||.+++++. .++. ..+..++++.+..+ + .+.+++.++++.|+|+|+++++++|++++|+++||+
T Consensus 211 e~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~ps 290 (324)
T cd01563 211 QAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPA 290 (324)
T ss_pred ecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCch
Confidence 999987553 2211 12334555443211 1 123456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCC
Q 024252 218 SGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERY 250 (270)
Q Consensus 218 sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~ 250 (270)
||+++++++++.+++. .++++||+++||+|.|+
T Consensus 291 sa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 291 SAASLAGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 9999999999887653 46789999999999874
No 46
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=3.5e-45 Score=320.60 Aligned_cols=235 Identities=26% Similarity=0.360 Sum_probs=200.3
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.+++++| + .++||++|+||||+|+|++|+++|++|++|+|++.+..|+++|+.+||+|+.+++ +++++.+.++
T Consensus 56 l~~~~~~~---~-~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~ 129 (304)
T cd01562 56 LLSLSEEE---R-AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKAR 129 (304)
T ss_pred HHhcCHhh---c-CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHH
Confidence 45555555 1 2369999999999999999999999999999999999999999999999999996 4888889999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. +++|++||+|+.+ ..||+++++||++|++ .||+||+|+|+|||++|++++||..++++|||+|+|.+++++
T Consensus 130 ~la~~~-~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~ 206 (304)
T cd01562 130 ELAEEE-GLTFIHPFDDPDV-IAGQGTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAM 206 (304)
T ss_pred HHHHhc-CCEEeCCCCCcch-hccHHHHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchH
Confidence 998886 7899999999987 7899999999999996 499999999999999999999999999999999999998765
Q ss_pred c----CCCCC-----CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHh
Q 024252 162 S----GGKPG-----PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 229 (270)
Q Consensus 162 ~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~ 229 (270)
. .++.. .+...+++.+. .++.+.++++|+++.|+|+|+++++++|++++|+++||+||+++++++++.
T Consensus 207 ~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~ 286 (304)
T cd01562 207 AQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGK 286 (304)
T ss_pred HHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCc
Confidence 3 22221 22334444322 123355678999999999999999999999999999999999999999987
Q ss_pred hcCCCCCCeEEEEecCCC
Q 024252 230 KRPENAGKLIVVVFPSFG 247 (270)
Q Consensus 230 ~~~~~~~~~vv~i~t~gg 247 (270)
++. ++++||+|+|||.
T Consensus 287 ~~~--~~~~vv~i~tGG~ 302 (304)
T cd01562 287 LDL--KGKKVVVVLSGGN 302 (304)
T ss_pred ccc--CCCeEEEEecCCC
Confidence 664 6789999997653
No 47
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=5.6e-45 Score=319.83 Aligned_cols=224 Identities=21% Similarity=0.295 Sum_probs=192.3
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++||++|+||||+|+|++|+++|++|+||||+.+++.|++.++.|||+|+.++. +++++.+.+++++++. +++|++|
T Consensus 68 ~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~ 144 (317)
T TIGR02991 68 AGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPP 144 (317)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCC
Confidence 469999999999999999999999999999999999999999999999999996 5788888888888776 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP----- 166 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~----- 166 (270)
|+||.+ ++||+|+++||++|++ .+|+||+|+|+||+++|++++||+++|++|||+|||++++++. .+++
T Consensus 145 ~~n~~~-~~g~~t~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~ 222 (317)
T TIGR02991 145 FDHPDI-VAGQGTLGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAE 222 (317)
T ss_pred CCChHH-HhhHHHHHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCC
Confidence 999987 7899999999999994 6899999999999999999999999999999999999887664 2332
Q ss_pred CCcccccCC--CC---CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEE
Q 024252 167 GPHKIQGIG--AG---FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 241 (270)
Q Consensus 167 ~~~~~~gl~--~~---~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~ 241 (270)
.++.+++++ .+ ..++++.++++|+++.|+|+|+++++++|++++|+++||+++++++++++... ..+++||+
T Consensus 223 ~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~~---~~~~~vvv 299 (317)
T TIGR02991 223 LPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGKI---KNPGPCAV 299 (317)
T ss_pred CCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCcc---ccCCcEEE
Confidence 223444442 11 23455667899999999999999999999999999999999999999974221 24678898
Q ss_pred EecCCCC
Q 024252 242 VFPSFGE 248 (270)
Q Consensus 242 i~t~gg~ 248 (270)
|+|+ |+
T Consensus 300 vltG-~n 305 (317)
T TIGR02991 300 IVSG-RN 305 (317)
T ss_pred EeCC-CC
Confidence 9866 55
No 48
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.1e-44 Score=324.29 Aligned_cols=226 Identities=20% Similarity=0.244 Sum_probs=194.5
Q ss_pred HHHHcCCCCCCC----------------cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 4 DAEEKGLIRPGE----------------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 4 ~a~~~g~l~~g~----------------~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
.|++.|.+.||. ++||++||||||+|+|++|+.+|++|+||||.++++.|++.|+.|||+|+.+
T Consensus 107 ~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v 186 (404)
T cd06447 107 LALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEY 186 (404)
T ss_pred HHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEE
Confidence 588999999985 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC---C-----CCEEEEecCCchhHHHHHH
Q 024252 68 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG---K-----IDALVSGIGTGGTVTGAGK 139 (270)
Q Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~---~-----~d~iv~~vG~Gg~~aGi~~ 139 (270)
++ +++++.+.+++++++.++.+|++|++++.. ++||+|+++||++|+++ . ||+||+|+|+||+++|+++
T Consensus 187 ~~--~~~~a~~~a~~la~~~~~~~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~ 263 (404)
T cd06447 187 ET--DYSKAVEEGRKQAAADPMCYFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAF 263 (404)
T ss_pred CC--CHHHHHHHHHHHHHHCCCeEeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHH
Confidence 85 688899999999888766788999766654 89999999999999952 3 5589999999999999999
Q ss_pred Hhhhc-CCCeEEEEEecCCCcccc----CCCC-----------CCcccccCCCCCC---ccccccccCCcEEEcCHHHHH
Q 024252 140 YLKEH-NPEIKLYGVEPVESAVLS----GGKP-----------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAI 200 (270)
Q Consensus 140 ~~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~ 200 (270)
+||+. .|+++||+|||.+++.+. .+.+ ..+.++|++.+.. ++.+.++++|+++.|+|+|+.
T Consensus 264 ~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~ 343 (404)
T cd06447 264 GLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELY 343 (404)
T ss_pred HHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHH
Confidence 99997 788999999999987652 2221 2244566665432 233446789999999999999
Q ss_pred HHHHHHHHHcCCeechhHHHHHHHHHHHhhcC
Q 024252 201 ETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232 (270)
Q Consensus 201 ~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~ 232 (270)
+++++|++++|+++||+||+++++++++.++.
T Consensus 344 ~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~ 375 (404)
T cd06447 344 RLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA 375 (404)
T ss_pred HHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987653
No 49
>PLN02569 threonine synthase
Probab=100.00 E-value=2.1e-44 Score=329.55 Aligned_cols=245 Identities=20% Similarity=0.196 Sum_probs=204.4
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
|..|.+.|........|+++||||||.|+|++|+.+|++|+||+|++ .+..|+.+++.|||+|+.+++ +|+++.+.+
T Consensus 174 vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a 251 (484)
T PLN02569 174 VSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLI 251 (484)
T ss_pred HHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHH
Confidence 44566666533323579999999999999999999999999999996 788999999999999999996 689999999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCC-CCEEEEecCCchhHHHHHHHhhhcC------CCeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK-IDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~-~d~iv~~vG~Gg~~aGi~~~~~~~~------~~~~vigV 153 (270)
+++.++. ++|+++++ ||.+ ++||+|+++||++|+++. ||+||+|+|+||+++|++++|+++. +.+|+++|
T Consensus 252 ~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~V 328 (484)
T PLN02569 252 REVTAEL-PIYLANSL-NSLR-LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCA 328 (484)
T ss_pred HHHHHHc-CCEecCCC-Ccch-hHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 9988776 68888988 8888 789999999999999764 9999999999999999999999974 45899999
Q ss_pred ecCCCcccc----CCCC-------CCcccccCCCCCCccccc------cccCCcEEEcCHHHHHHHHHHHHHHcCCeech
Q 024252 154 EPVESAVLS----GGKP-------GPHKIQGIGAGFIPGVLD------VNLLDETVQISSEEAIETAKLLALKEGLLVGI 216 (270)
Q Consensus 154 ~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~~~~------~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep 216 (270)
|+++++++. .+.. .++.+++++.+. |.... ++.-+.++.|+|+|+++++++ ++++|+++||
T Consensus 329 qa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vep 406 (484)
T PLN02569 329 QAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCP 406 (484)
T ss_pred eeCCCcHHHHHHHcCCCccccCCCCCccchhhccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECc
Confidence 999997764 2221 234456665542 43322 223345799999999999999 8899999999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcch
Q 024252 217 SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 217 ~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~ 253 (270)
+||+++++++++.+++. .++++||+++|++|.||.+.
T Consensus 407 ssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~ 444 (484)
T PLN02569 407 HTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQS 444 (484)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhH
Confidence 99999999999988764 46789999999999999874
No 50
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=9.7e-45 Score=317.55 Aligned_cols=228 Identities=23% Similarity=0.337 Sum_probs=192.6
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+|+|++|+++|++|+||+|+.+++.|+.+++.|||+|+.+++ +++++.+.+.+++++. +++|++
T Consensus 68 ~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~ 144 (310)
T PRK08246 68 AAGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCH 144 (310)
T ss_pred CCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCC
Confidence 4579999999999999999999999999999999999999999999999999985 5778888888888776 889999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCCCcc
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPGPHK 170 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~~~~ 170 (270)
||+||.+ +.||+|+++||++|+ +.||+||+|+|+||+++|++.+|+. .+|||+|||.+++++. .+++....
T Consensus 145 ~~~n~~~-i~g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~ 219 (310)
T PRK08246 145 AYDQPEV-LAGAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVP 219 (310)
T ss_pred CCCChhh-hcchHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCC
Confidence 9999997 789999999999999 4799999999999999999999974 4899999999998764 34443322
Q ss_pred c-----ccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 171 I-----QGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 171 ~-----~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
. ++++.+.. ++.+.++++|+++.|+|+|+++++++|++++|+++||++|++++++++...+. .++++||+|
T Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~~-~~~~~vv~i 298 (310)
T PRK08246 220 VSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVP-APGERVAVV 298 (310)
T ss_pred CCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCccc-cCCCeEEEE
Confidence 2 23333322 34466788999999999999999999999999999999999999997543321 357889999
Q ss_pred ecCCCCCCcc
Q 024252 243 FPSFGERYLS 252 (270)
Q Consensus 243 ~t~gg~~~~~ 252 (270)
+|| |+.+++
T Consensus 299 ~~g-~n~d~~ 307 (310)
T PRK08246 299 LCG-ANTDPA 307 (310)
T ss_pred ECC-CCCChh
Confidence 966 665554
No 51
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-45 Score=295.08 Aligned_cols=231 Identities=24% Similarity=0.342 Sum_probs=200.1
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.+.|++.||||||+|+|++|+..|+|++||||.++|..|+..++.||++|+++++. .+.+.+.+.++.++. +.+.++
T Consensus 73 ~kgvithSSGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~ 149 (323)
T KOG1251|consen 73 AKGVITHSSGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIH 149 (323)
T ss_pred cCceEeecCCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeC
Confidence 44699999999999999999999999999999999999999999999999999974 356778889998887 889999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc----cCCCC----
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL----SGGKP---- 166 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~----~~~~~---- 166 (270)
||++|.. +.|++|+++|+++|. +.+|++|+|+|+||+++|++...+.+.|+.+|++|||++.+.- ..++.
T Consensus 150 Py~~p~v-IaGqgTiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~ 227 (323)
T KOG1251|consen 150 PYNHPSV-IAGQGTIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLD 227 (323)
T ss_pred CCCCcce-eeccchHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecC
Confidence 9999998 899999999999999 4899999999999999999999999999999999999887532 22322
Q ss_pred -CCcccccCCC---CCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 167 -GPHKIQGIGA---GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 167 -~~~~~~gl~~---~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
..+..+|... |..+|++.++++|+++.|+|+|+.++++.++++..+.+||+++.+||+++....+ ...+++.+|
T Consensus 228 tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~--~~~K~igIi 305 (323)
T KOG1251|consen 228 TPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFA--LNIKRIGII 305 (323)
T ss_pred CchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHH--hccCceEEE
Confidence 1233445433 2357888899999999999999999999999999999999999999999865433 457889988
Q ss_pred ecCCCCCCcch
Q 024252 243 FPSFGERYLSS 253 (270)
Q Consensus 243 ~t~gg~~~~~~ 253 (270)
+ +|||.++..
T Consensus 306 L-sGGNVD~~~ 315 (323)
T KOG1251|consen 306 L-SGGNVDLNS 315 (323)
T ss_pred E-eCCcccccc
Confidence 8 778876664
No 52
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=2.2e-44 Score=325.28 Aligned_cols=242 Identities=25% Similarity=0.279 Sum_probs=202.8
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
|.+|.++| .++||++||||||+|+|++|+++|++|+||+|++ ++..|+.+++.|||+|+.+++ +++++.+.+
T Consensus 107 v~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a 179 (397)
T PRK06260 107 VTKALELG-----VKTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMV 179 (397)
T ss_pred HHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHH
Confidence 55677666 4579999999999999999999999999999997 789999999999999999996 578888889
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV 153 (270)
++++++. ++|+++++ ||.+ +.||+|+++||++|+++ .||+||+|+|+||+++|++++|+++.+ .+|||+|
T Consensus 180 ~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~V 256 (397)
T PRK06260 180 VELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGI 256 (397)
T ss_pred HHHHhhC-CEEeecCC-Cchh-hcchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEE
Confidence 9988876 78888887 8887 78999999999999976 699999999999999999999999763 4899999
Q ss_pred ecCCCcccc----CCCCC-------CcccccCCCCCCcc------ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech
Q 024252 154 EPVESAVLS----GGKPG-------PHKIQGIGAGFIPG------VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI 216 (270)
Q Consensus 154 ~~~~~~~~~----~~~~~-------~~~~~gl~~~~~~~------~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep 216 (270)
||++++++. .+... .+..+++..+. |. .+.++..+.++.|+|+|+++++++|++++|+++||
T Consensus 257 q~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vep 335 (397)
T PRK06260 257 QAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEP 335 (397)
T ss_pred ecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCc
Confidence 999997663 22221 12223332221 21 12345567899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 217 SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 217 ~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
++|+++++++++.+++. .++++||+++||+|.|+.+.+
T Consensus 336 ssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~~ 374 (397)
T PRK06260 336 ASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDAA 374 (397)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHHH
Confidence 99999999999988765 468899999999999987754
No 53
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=3.1e-44 Score=316.31 Aligned_cols=237 Identities=22% Similarity=0.266 Sum_probs=194.7
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
+|.+|+++| .++||++|+||||+|+|++|+.+|++|+||||...+..|+++++.|||+|+.+++ +++++.+.+
T Consensus 54 ~l~~a~~~g-----~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a 126 (319)
T PRK06381 54 HVRRAMRLG-----YSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERS 126 (319)
T ss_pred HHHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHH
Confidence 356777776 4679999999999999999999999999999999999999999999999999996 478888888
Q ss_pred HHHHHhCCCccccCCCC-CCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhc------CCCeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFE-NPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEH------NPEIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~------~~~~~vigV 153 (270)
+++.++. ++|+++|++ ||...+.||.|+++||++|++..||+||+|+|+||+++|++++|+++ .|.+||++|
T Consensus 127 ~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigV 205 (319)
T PRK06381 127 RKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGV 205 (319)
T ss_pred HHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEE
Confidence 8888775 788888886 76323789999999999999767999999999999999999999998 789999999
Q ss_pred ecCCCcccc----CCCCC--C---ccccc--CCCCCC-----c----cccccccCCcEEEcCHHHHHHHHHHHHHHcCCe
Q 024252 154 EPVESAVLS----GGKPG--P---HKIQG--IGAGFI-----P----GVLDVNLLDETVQISSEEAIETAKLLALKEGLL 213 (270)
Q Consensus 154 ~~~~~~~~~----~~~~~--~---~~~~g--l~~~~~-----~----~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~ 213 (270)
+|.+++++. .+... . ..+.. +..+.. . ..+..++.++++.|+|+|+++++++|++++||+
T Consensus 206 e~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~ 285 (319)
T PRK06381 206 STSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLN 285 (319)
T ss_pred eeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcc
Confidence 999986553 22211 0 01110 111110 0 113356777999999999999999999999999
Q ss_pred echhHHHHHHHHHHHhhcCCCCCCeEEEEecCC
Q 024252 214 VGISSGAATAAAIQIAKRPENAGKLIVVVFPSF 246 (270)
Q Consensus 214 ~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~g 246 (270)
+||++|+++++++++.+++.. +++||+++|||
T Consensus 286 ~epssa~alaa~~~~~~~~~~-~~~vv~i~tGg 317 (319)
T PRK06381 286 ALPASASALAALVKYLKKNGV-NDNVVAVITGR 317 (319)
T ss_pred cCchHHHHHHHHHHHHHcCCC-CCcEEEEecCC
Confidence 999999999999999877643 47899999764
No 54
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=2.5e-44 Score=324.13 Aligned_cols=233 Identities=22% Similarity=0.261 Sum_probs=195.9
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC--
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ-- 94 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 94 (270)
+|+++|+||||+|+|++|+++|++|+||||+++++.|+..|+.|||+|+.++. +++++.+.+.+++++. +++|++
T Consensus 118 ~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~v~~~ 194 (399)
T PRK08206 118 TFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GWVVVQDT 194 (399)
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CCEEecCc
Confidence 59999999999999999999999999999999999999999999999999995 6888888999988876 778776
Q ss_pred ---CCCC-CCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHhhhcC--CCeEEEEEecCCCcccc---
Q 024252 95 ---QFEN-PANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHN--PEIKLYGVEPVESAVLS--- 162 (270)
Q Consensus 95 ---~~~~-~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~~~~~--~~~~vigV~~~~~~~~~--- 162 (270)
||+| |.+.+.||+|+++||++|+++ .||+||+|+|+|||++|++.++++++ +.+|||+|||++++++.
T Consensus 195 ~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~ 274 (399)
T PRK08206 195 AWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSA 274 (399)
T ss_pred cccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHH
Confidence 6765 556688999999999999965 59999999999999999999999984 47999999999998763
Q ss_pred -CCCCC------CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHH----HcCCeechhHHHHHHHHHHH
Q 024252 163 -GGKPG------PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLAL----KEGLLVGISSGAATAAAIQI 228 (270)
Q Consensus 163 -~~~~~------~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~----~~gi~~ep~sg~alaa~~~~ 228 (270)
.+++. .+..+++..+. .++.+.++.+|+++.|+|+|+++++++|++ ++|+++||++|+++++++++
T Consensus 275 ~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~ 354 (399)
T PRK08206 275 VDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAAL 354 (399)
T ss_pred HcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHH
Confidence 23321 23345554432 234455688999999999999999999996 78999999999999999976
Q ss_pred hhc---------CC-CCCCeEEEEecCCCCCCcch
Q 024252 229 AKR---------PE-NAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 229 ~~~---------~~-~~~~~vv~i~t~gg~~~~~~ 253 (270)
.++ +. .++++||+|+| +|+++.+.
T Consensus 355 ~~~~~~~~~~~~~~i~~~~~Vv~ilt-gG~~d~~~ 388 (399)
T PRK08206 355 MTDPDYQELREKLGLDEDSRVLLIST-EGDTDPDR 388 (399)
T ss_pred HhcchhhHHHHhcCCCCCCEEEEEEC-CCCCCHHH
Confidence 532 22 35789999997 78877663
No 55
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=2.8e-44 Score=316.94 Aligned_cols=229 Identities=24% Similarity=0.222 Sum_probs=187.1
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||..|.+.| .++|+++||||||.|+|++|+++|++|+||||+++++.|+.+|+.|||+|+.+++ +++++.+.
T Consensus 88 ~i~~a~~~g-----~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~- 159 (338)
T PRK06450 88 LISYLAEKG-----IKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA- 159 (338)
T ss_pred HHHHHHHcC-----CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH-
Confidence 356677655 4579999999999999999999999999999999999999999999999999996 45554433
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV 153 (270)
+++. +.+|++++.||.+ ++||+|+++||++|+++ .||+||+|+|+||+++|++++|+++.+ .+|+|+|
T Consensus 160 ---a~~~-g~~~~~~~~np~~-ieG~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~V 234 (338)
T PRK06450 160 ---AENS-GYYYASHVLQPQF-RDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAV 234 (338)
T ss_pred ---HHhc-CeEeccCCCCccH-HHHHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEE
Confidence 4443 6788899999998 78999999999999964 599999999999999999999999864 3899999
Q ss_pred ecCCCcccc----CCCCC-----CcccccCCCCCCcccc------ccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhH
Q 024252 154 EPVESAVLS----GGKPG-----PHKIQGIGAGFIPGVL------DVNLLDETVQISSEEAIETAKLLALKEGLLVGISS 218 (270)
Q Consensus 154 ~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~------~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~s 218 (270)
||++++++. +..+. .+..+++..+. |... .++. ++.+.|+|+|+++++++|++ +|+++||+|
T Consensus 235 q~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~-p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepss 311 (338)
T PRK06450 235 QTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR-PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSS 311 (338)
T ss_pred eeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhH
Confidence 999987764 22111 12233443222 2221 2344 78999999999999999987 599999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCc
Q 024252 219 GAATAAAIQIAKRPENAGKLIVVVFPSFGERYL 251 (270)
Q Consensus 219 g~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~ 251 (270)
|+++++++++ ++++||+++||+|+|.+
T Consensus 312 aaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 312 ATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred HHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 9999999875 34789999999999864
No 56
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=2.8e-43 Score=322.00 Aligned_cols=238 Identities=21% Similarity=0.252 Sum_probs=198.6
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|++.| .++||++||||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+
T Consensus 103 ~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a 175 (442)
T PRK05638 103 AVSYGLPYA-----ANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYA 175 (442)
T ss_pred HHHHHHHcC-----CCEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHH
Confidence 355676654 5679999999999999999999999999999999999999999999999999985 688888888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEEe
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVE 154 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV~ 154 (270)
++++++. ++|++++++||.+ +.||+|+++||++|++ ||+||+|+|+||+++|++++|+++.+ .+||++||
T Consensus 176 ~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq 251 (442)
T PRK05638 176 EELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQ 251 (442)
T ss_pred HHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEe
Confidence 8887775 7899999999998 7899999999999995 99999999999999999999999865 37999999
Q ss_pred cCCCcccc----CCCC--CCcccccCCCCCCcc------ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHH
Q 024252 155 PVESAVLS----GGKP--GPHKIQGIGAGFIPG------VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAT 222 (270)
Q Consensus 155 ~~~~~~~~----~~~~--~~~~~~gl~~~~~~~------~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~al 222 (270)
|++++++. ++.. ..+...++..+. |. ...+++.+.++.|+|+++.++++.+++ +||++||+||+++
T Consensus 252 ~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~-p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~epssaaa~ 329 (442)
T PRK05638 252 TERCNPIASEILGNKTKCNETKALGLYVKN-PVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAELSSAVVM 329 (442)
T ss_pred cCCCCHHHHHHhcCCCCCCCceeeeEeeCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceecchHHHHH
Confidence 99987664 2221 122233442221 11 122345567889999999888887765 7999999999999
Q ss_pred HHHHHHhhcCC-CCCCeEEEEecCCCCCCc
Q 024252 223 AAAIQIAKRPE-NAGKLIVVVFPSFGERYL 251 (270)
Q Consensus 223 aa~~~~~~~~~-~~~~~vv~i~t~gg~~~~ 251 (270)
|+++++.+++. .++++||+++||+|.|+.
T Consensus 330 Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 330 PALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 99999988765 568899999999999985
No 57
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.3e-42 Score=295.28 Aligned_cols=206 Identities=45% Similarity=0.646 Sum_probs=189.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
++..+.++|++ |+ .+||++|+||||+|+|++|+++|++|++|+|...++.|+++++.+|++|+.+++ +++++.+.+
T Consensus 38 ~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a 113 (244)
T cd00640 38 LILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALA 113 (244)
T ss_pred HHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHH
Confidence 46778888877 54 469999999999999999999999999999999999999999999999999996 478888999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
++++++.++++|++||.|+.+ +.||.++++||++|++. .||+||+|+|+||+++|++.+|+..+|.+|||+|+|
T Consensus 114 ~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~---- 188 (244)
T cd00640 114 KELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP---- 188 (244)
T ss_pred HHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----
Confidence 999988568999999999988 78899999999999976 699999999999999999999999999999999987
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
+++.|+|+|+++++++|++++|+++||++|+++++++++.++. .++++|
T Consensus 189 ------------------------------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~-~~~~~v 237 (244)
T cd00640 189 ------------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTV 237 (244)
T ss_pred ------------------------------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhc-CCCCEE
Confidence 7899999999999999999999999999999999999988775 367899
Q ss_pred EEEecCC
Q 024252 240 VVVFPSF 246 (270)
Q Consensus 240 v~i~t~g 246 (270)
|+++||+
T Consensus 238 v~v~tg~ 244 (244)
T cd00640 238 VVILTGG 244 (244)
T ss_pred EEEeCCC
Confidence 9999874
No 58
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=5.6e-43 Score=312.34 Aligned_cols=242 Identities=19% Similarity=0.249 Sum_probs=196.6
Q ss_pred HHcCCCCC--CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHH
Q 024252 6 EEKGLIRP--GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI 83 (270)
Q Consensus 6 ~~~g~l~~--g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~ 83 (270)
++.+++++ |.++||++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.|||+|+.+++ +++++.+.++++
T Consensus 83 ~~~~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~ 160 (376)
T TIGR01747 83 LKNDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQM 160 (376)
T ss_pred HhhhHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHH
Confidence 34455543 35689999999999999999999999999999999999999999999999999995 588888889888
Q ss_pred HHhCCCccccC-----CCCC--CCchhhhhhchHHHHHHhhCC----CCCEEEEecCCchhHHHHHHHhhhcCC--CeEE
Q 024252 84 RDKTPNSYVLQ-----QFEN--PANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNP--EIKL 150 (270)
Q Consensus 84 ~~~~~~~~~~~-----~~~~--~~~~~~G~~t~~~EI~~ql~~----~~d~iv~~vG~Gg~~aGi~~~~~~~~~--~~~v 150 (270)
+++. ++++++ +|+| |. .+.||+|+++||++|+++ .||+||+|+|+||+++|++.++++..+ .++|
T Consensus 161 ~~~~-g~~~~~~~~~~~~~~~~~~-ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~v 238 (376)
T TIGR01747 161 AQQH-GWVVVQDTAWEGYEKIPTW-IMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHS 238 (376)
T ss_pred HHhc-CcEEeccccccccccCCch-HHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEE
Confidence 8776 678876 4655 43 378999999999999963 699999999999999999999987654 3799
Q ss_pred EEEecCCCccccC------CCCC------CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHc----C
Q 024252 151 YGVEPVESAVLSG------GKPG------PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKE----G 211 (270)
Q Consensus 151 igV~~~~~~~~~~------~~~~------~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~----g 211 (270)
++|||.+++++.. +++. .+.++++..+. .++.+.++..+.++.|+|+|+.+++++|++.. +
T Consensus 239 i~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~ 318 (376)
T TIGR01747 239 IVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPR 318 (376)
T ss_pred EEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCe
Confidence 9999999988742 3321 24456676543 24556678899999999999999999999855 5
Q ss_pred CeechhHHHHHHHHHHH---------hhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 212 LLVGISSGAATAAAIQI---------AKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 212 i~~ep~sg~alaa~~~~---------~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
+++||+++++++++... .+++. .++++||+|+ ++|+.+.+
T Consensus 319 i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~-t~gn~d~~ 368 (376)
T TIGR01747 319 IISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS-TEGDTDPD 368 (376)
T ss_pred EeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe-CCCCCCHH
Confidence 99999999999888843 33333 3468888888 66886665
No 59
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=3.6e-42 Score=304.41 Aligned_cols=241 Identities=23% Similarity=0.263 Sum_probs=196.3
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
|.++.++| ..+||++||||||+|+|++|+++|++|+||+|+. +++.|+..++.+||+|+.+++ +++++.+.+
T Consensus 63 l~~a~~~g-----~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~ 135 (328)
T TIGR00260 63 LTKALELG-----NDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLV 135 (328)
T ss_pred HHHHHHcC-----CCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHH
Confidence 55666666 3479999999999999999999999999999998 899999999999999999996 578888888
Q ss_pred HHHHHhCCCccccCCCC-CCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcCC-----CeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFE-NPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP-----EIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~~-----~~~vigV 153 (270)
+++.++. +.+++++++ +|.+ +.||.|+++||++|+++ .||+||+|+|+||+++|++.+|+++.. .+++++|
T Consensus 136 ~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~V 213 (328)
T TIGR00260 136 KQLFGDK-EALGLNSVNSIPYR-LEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGI 213 (328)
T ss_pred HHHHhhc-CeeecccCCCCCeE-eeeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEE
Confidence 8888775 455555543 2666 78999999999999974 799999999999999999999998521 2499999
Q ss_pred ecCCCcccc-----CCCCC-----CcccccCCCCCCccc------cccccCCcEEEcCHHHHHHHHHHHHHHcCCeechh
Q 024252 154 EPVESAVLS-----GGKPG-----PHKIQGIGAGFIPGV------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS 217 (270)
Q Consensus 154 ~~~~~~~~~-----~~~~~-----~~~~~gl~~~~~~~~------~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~ 217 (270)
||.+++++. .++.. .+..++++.+. |.+ +.+.+.++.+.|+|+|+++++++|++++|+++||+
T Consensus 214 e~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~ps 292 (328)
T TIGR00260 214 QAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPH 292 (328)
T ss_pred EcCCCChHHHHHHcCCCcCcCCCCCccCcceecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECch
Confidence 999985442 23222 12233443322 222 23467899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 218 SGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 218 sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
+|+++++++++.+++. .++++||+++||+|.|+.+
T Consensus 293 sa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 293 SAVSVAALLKLVEKGTADPAERVVCALTGNGLKDPE 328 (328)
T ss_pred HHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCCC
Confidence 9999999999887654 4678999999999998753
No 60
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=8.7e-42 Score=305.07 Aligned_cols=245 Identities=26% Similarity=0.289 Sum_probs=186.0
Q ss_pred HHHHHHcCCCCCCCcEEEe-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHcCCEEEEeCCCC-ChHHH
Q 024252 2 IADAEEKGLIRPGESVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPASMS---LERRMVLLAFGAELVLTDPAR-GMKGA 76 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~---~~k~~~~~~~Ga~v~~~~~~~-~~~~~ 76 (270)
+..|.++|. +.+|+ +|+||||+|+|++|+++|++|+||+|+..+ +.|+.+++.+||+|+.++... .+.++
T Consensus 74 ~~~a~~~g~-----~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~ 148 (365)
T cd06446 74 ALLAKRMGK-----KRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDA 148 (365)
T ss_pred HHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHH
Confidence 344566662 23555 799999999999999999999999998643 367889999999999998632 35566
Q ss_pred HHHHHHH-HHhC-CCccccCCC----CCCCchhhhhhchHHHHHHhhCC----CCCEEEEecCCchhHHHHHHHhhhcCC
Q 024252 77 VQKAEEI-RDKT-PNSYVLQQF----ENPANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNP 146 (270)
Q Consensus 77 ~~~a~~~-~~~~-~~~~~~~~~----~~~~~~~~G~~t~~~EI~~ql~~----~~d~iv~~vG~Gg~~aGi~~~~~~~~~ 146 (270)
...+.+. .++. +.+|+++++ .++.++++||+|+++||++|++. .||+||+|+|+|||++|++++++. .+
T Consensus 149 ~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~ 227 (365)
T cd06446 149 ISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DK 227 (365)
T ss_pred HHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CC
Confidence 5444443 3332 234444332 12335688999999999999963 699999999999999999998887 46
Q ss_pred CeEEEEEecCCCccccCC--------CCC--------------------CcccccCCCC-CCc--cccccccCCcEEEcC
Q 024252 147 EIKLYGVEPVESAVLSGG--------KPG--------------------PHKIQGIGAG-FIP--GVLDVNLLDETVQIS 195 (270)
Q Consensus 147 ~~~vigV~~~~~~~~~~~--------~~~--------------------~~~~~gl~~~-~~~--~~~~~~~~~~~~~V~ 195 (270)
++|||+|||.+++.+.+. ... .+..++++.+ ..+ +.+..+++|+++.|+
T Consensus 228 ~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~ 307 (365)
T cd06446 228 DVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVT 307 (365)
T ss_pred CceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeC
Confidence 899999999998876421 110 0112233321 111 124456789999999
Q ss_pred HHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcch
Q 024252 196 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 196 ~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~ 253 (270)
|+|+++++++|++++||++||+||+++++++++.++. .++++||+|+||+|+||+++
T Consensus 308 d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 308 DEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred hHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 9999999999999999999999999999999988765 36789999999999999886
No 61
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=3.2e-42 Score=309.31 Aligned_cols=242 Identities=18% Similarity=0.121 Sum_probs=195.9
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|..+.+.| .+.||++|+||||+|+|++|+++|++|+||||++++..+...++.+|++|+.+++ +|+++.+.++
T Consensus 109 i~~a~~~g-----~~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~ 181 (398)
T TIGR03844 109 MQRLKERG-----GKTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALAD 181 (398)
T ss_pred HHHHHHcC-----CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHH
Confidence 45666666 4579999999999999999999999999999997654334445789999999985 6889999999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcC-------CCeEEEEEe
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-------PEIKLYGVE 154 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~-------~~~~vigV~ 154 (270)
+++++. +++..++++||.. ++|++|+++||++|++..||+||+|+|+|+++.|++.+++++. ..||+++||
T Consensus 182 ~~a~~~-g~~~~~~~~~p~~-ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ 259 (398)
T TIGR03844 182 RIATLP-GFVPEGGARNVAR-RDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQ 259 (398)
T ss_pred HHHHhC-CccccCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEE
Confidence 988775 6554456678876 8999999999999996449999999999999999999998842 337899999
Q ss_pred cCCCcccc----CCCCC---------------CcccccCCCCCCcc-------ccccccCCcEEEcCHHHHHHHHHHHHH
Q 024252 155 PVESAVLS----GGKPG---------------PHKIQGIGAGFIPG-------VLDVNLLDETVQISSEEAIETAKLLAL 208 (270)
Q Consensus 155 ~~~~~~~~----~~~~~---------------~~~~~gl~~~~~~~-------~~~~~~~~~~~~V~~~e~~~a~~~l~~ 208 (270)
+++++++. .++.. .+..+++..+..+. ...++..++++.|+|+|+.++++.|++
T Consensus 260 ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~ 339 (398)
T TIGR03844 260 NLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEE 339 (398)
T ss_pred cCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh
Confidence 99998764 33221 12234443322222 233577899999999999999999999
Q ss_pred HcCCeechhHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 209 KEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 209 ~~gi~~ep~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
++|+++||++|+++||++++.+++. .++++||+++||+|.|++.
T Consensus 340 ~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~ 384 (398)
T TIGR03844 340 SEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLR 384 (398)
T ss_pred hCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHH
Confidence 9999999999999999999988765 3788999999999999775
No 62
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=2.5e-42 Score=302.57 Aligned_cols=240 Identities=21% Similarity=0.258 Sum_probs=188.0
Q ss_pred CHHHHHHcCCCCCCCcEEEee--CCcHHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCC
Q 024252 1 MIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~a--SsGN~g~alA~aa~~~G~~~~iv~p~~~~--------~~k~~~~~~~Ga~v~~~~~~ 70 (270)
||.+|+++| .++||++ |+||||+|+|++|+++|++|+||||++.+ ..|+++++.+||+|+.++..
T Consensus 43 ~l~~a~~~g-----~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~ 117 (307)
T cd06449 43 LLPDALAKG-----ADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAG 117 (307)
T ss_pred HHHHHHHcC-----CCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCc
Confidence 355666666 4579998 68999999999999999999999999876 46899999999999999864
Q ss_pred CC--hHHHHHHHHH-HHHhCCCcccc-CCC-CCCCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHhh
Q 024252 71 RG--MKGAVQKAEE-IRDKTPNSYVL-QQF-ENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLK 142 (270)
Q Consensus 71 ~~--~~~~~~~a~~-~~~~~~~~~~~-~~~-~~~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~~ 142 (270)
.+ ...+.+.+.+ +.++.+..|++ +++ +||.+ ..||.++++||++|++. .||+||+|+|+|||++|++++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~ 196 (307)
T cd06449 118 FDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-GLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLA 196 (307)
T ss_pred chhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHH
Confidence 21 1223333333 33333233444 444 38887 78999999999999964 69999999999999999999999
Q ss_pred hcCCCeEEEEEecCCCccccCCCCC---CcccccCC--CCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-
Q 024252 143 EHNPEIKLYGVEPVESAVLSGGKPG---PHKIQGIG--AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI- 216 (270)
Q Consensus 143 ~~~~~~~vigV~~~~~~~~~~~~~~---~~~~~gl~--~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep- 216 (270)
+.++++|||+|+|.+++.+...+.. ...+.+++ .+..+..+..+++|+++.|+|+|+++++++|++++||++||
T Consensus 197 ~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ 276 (307)
T cd06449 197 ALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPV 276 (307)
T ss_pred hcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccc
Confidence 9999999999999998765321110 01222222 22235567778999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCCeEEEEecCC
Q 024252 217 SSGAATAAAIQIAKRPE-NAGKLIVVVFPSF 246 (270)
Q Consensus 217 ~sg~alaa~~~~~~~~~-~~~~~vv~i~t~g 246 (270)
|+|+++++++++.+++. .++++||+|||||
T Consensus 277 ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 277 YEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred hHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 89999999999988764 4678999999775
No 63
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-41 Score=278.88 Aligned_cols=260 Identities=38% Similarity=0.581 Sum_probs=220.3
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-----ChH-
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-----GMK- 74 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~-----~~~- 74 (270)
||+.|++.|+|-||. +|++.|+||+|+++|..|+.+|.+|+|+||.+.+.+|.+.++.+||+|+.|.+.. .|.
T Consensus 87 iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn 165 (391)
T KOG1481|consen 87 IIRTAEEKGKLVRGG-TVVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVN 165 (391)
T ss_pred HHHHHHHcCCcccCc-eEEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHH
Confidence 688999999999995 6999999999999999999999999999999999999999999999999987532 222
Q ss_pred HHHHHHHHHHHhCC--CccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCC-eEEE
Q 024252 75 GAVQKAEEIRDKTP--NSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-IKLY 151 (270)
Q Consensus 75 ~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~-~~vi 151 (270)
.+.+.+.++..+.. ..++.+||+|+.|+..||.++|+||+.|.++++|++++.+|+|||++|+.+++|+..+. +++.
T Consensus 166 ~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~ 245 (391)
T KOG1481|consen 166 QARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVF 245 (391)
T ss_pred HHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEE
Confidence 23344444433322 23678999999999999999999999999999999999999999999999999999876 8999
Q ss_pred EEecCCCcccc-------------CCC----CCCcccccCCCCCCcccc--ccccCCcEEEcCHHHHHHHHHHHHHHcCC
Q 024252 152 GVEPVESAVLS-------------GGK----PGPHKIQGIGAGFIPGVL--DVNLLDETVQISSEEAIETAKLLALKEGL 212 (270)
Q Consensus 152 gV~~~~~~~~~-------------~~~----~~~~~~~gl~~~~~~~~~--~~~~~~~~~~V~~~e~~~a~~~l~~~~gi 212 (270)
..+|-++-.+. +|+ +..+..+|+|.+.++.++ ..+++|+.+.|+|+++++..+.|..++|+
T Consensus 246 laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGL 325 (391)
T KOG1481|consen 246 LADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGL 325 (391)
T ss_pred EeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCce
Confidence 99999984221 122 234556788877666554 46789999999999999999999999999
Q ss_pred eechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 213 LVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 213 ~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
+++.||+.+..|+.++++.. .+|++||+|+|+.|.|+++.++.+.+.+.
T Consensus 326 FvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCDsG~rh~sk~~~~~~l~~ 374 (391)
T KOG1481|consen 326 FVGSSSALNCVAAVRVAKTL-GPGHTIVTILCDSGSRHLSKLFSESFLES 374 (391)
T ss_pred EecchhhHHHHHHHHHHHhc-CCCceEEEEEeCCcchHHHHhcCHHHHhh
Confidence 99999999999999998765 48999999999999999998766665554
No 64
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.1e-40 Score=298.43 Aligned_cols=246 Identities=26% Similarity=0.269 Sum_probs=187.6
Q ss_pred HHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHHcCCEEEEeCC-CCChHHHHH
Q 024252 3 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL---ERRMVLLAFGAELVLTDP-ARGMKGAVQ 78 (270)
Q Consensus 3 ~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga~v~~~~~-~~~~~~~~~ 78 (270)
..|.+.| + .+.|+++|+||||+|+|++|+++|++|+||||+..++ .|+.+|+.+||+|+.++. ...++++.+
T Consensus 103 l~A~~~G---~-~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~ 178 (402)
T PRK13028 103 LLAKRMG---K-KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVD 178 (402)
T ss_pred HHHHHcC---C-CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHH
Confidence 3455556 2 2346679999999999999999999999999985443 567899999999999984 346788877
Q ss_pred HHHH-HHHhCCCccccC-CC----CCCCchhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhcCCCe
Q 024252 79 KAEE-IRDKTPNSYVLQ-QF----ENPANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEI 148 (270)
Q Consensus 79 ~a~~-~~~~~~~~~~~~-~~----~~~~~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~ 148 (270)
.+.+ +.++.++.+|+. +. ..|.++..||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .+++
T Consensus 179 ~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v 257 (402)
T PRK13028 179 SAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESV 257 (402)
T ss_pred HHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCc
Confidence 7755 454433555553 21 1233445699999999999973 3599999999999999999999986 4889
Q ss_pred EEEEEecCC--------CccccCCCCC--------------------CcccccCCCCC-Ccc--ccccccCCcEEEcCHH
Q 024252 149 KLYGVEPVE--------SAVLSGGKPG--------------------PHKIQGIGAGF-IPG--VLDVNLLDETVQISSE 197 (270)
Q Consensus 149 ~vigV~~~~--------~~~~~~~~~~--------------------~~~~~gl~~~~-~~~--~~~~~~~~~~~~V~~~ 197 (270)
|||||||.+ ++++..+++. .+...++..+. -|. .+.....++.+.|+|+
T Consensus 258 ~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~ 337 (402)
T PRK13028 258 RLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDE 337 (402)
T ss_pred eEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHH
Confidence 999999998 6666544431 01112332211 121 1334456789999999
Q ss_pred HHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 198 EAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 198 e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++++++|+++|||+++++|++++++++++.++. .++++||+++||+|+||++.+
T Consensus 338 eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l-~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 338 EALDAFFLLSRTEGIIPALESSHAVAYAIKLAPEL-SKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred HHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhc-CCCCeEEEEECCCCccCHHHH
Confidence 99999999999999999999999999999987653 368899999999999998864
No 65
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=4.9e-41 Score=301.77 Aligned_cols=233 Identities=20% Similarity=0.223 Sum_probs=187.1
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC-
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ- 94 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~- 94 (270)
.+||++|+||||+|+|++|+++|++|+||||+++++.|+..++.|||+|+.+++ +++++.+.+++++++. +++|++
T Consensus 114 ~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~ 190 (396)
T TIGR03528 114 ITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQD 190 (396)
T ss_pred cEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeecc
Confidence 379999999999999999999999999999999999999999999999999985 6888889999988875 778875
Q ss_pred ----CCCCC-CchhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhc-CCC-eEEEEEecCCCccccC
Q 024252 95 ----QFENP-ANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEH-NPE-IKLYGVEPVESAVLSG 163 (270)
Q Consensus 95 ----~~~~~-~~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~-~~~-~~vigV~~~~~~~~~~ 163 (270)
+|+|. ...+.||+|+++||++|++ +.||+||+|+|+||+++|++.++++. .+. +|||+|||++++++..
T Consensus 191 ~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~ 270 (396)
T TIGR03528 191 TAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYR 270 (396)
T ss_pred ccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHH
Confidence 57652 2236899999999999996 26999999999999999999988554 343 5999999999987742
Q ss_pred ------CCCC------CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHH----HcCCeechhHHHHHHH
Q 024252 164 ------GKPG------PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLAL----KEGLLVGISSGAATAA 224 (270)
Q Consensus 164 ------~~~~------~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~----~~gi~~ep~sg~alaa 224 (270)
+++. .+..+++..+. .++.+.++++|+++.|+|+|+.+++++|++ ++++++||++|+++++
T Consensus 271 s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aa 350 (396)
T TIGR03528 271 SAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGL 350 (396)
T ss_pred HHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHH
Confidence 2221 23445565432 234455688999999999999999999998 5799999999999966
Q ss_pred HHHH---------hhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 225 AIQI---------AKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 225 ~~~~---------~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
+..+ .+++. .++++||+|+ +|||.+.+
T Consensus 351 laa~~~~~~~~~~~~~~~~~~~~~vv~i~-tggn~d~~ 387 (396)
T TIGR03528 351 LAAVMTNPDYKELREKLQLDKNSRVLLIS-TEGDTDPD 387 (396)
T ss_pred HHHHHhCchhHHHHHhcCCCCCCEEEEEE-CCCCCCHH
Confidence 5332 22222 3578899999 55886555
No 66
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.4e-41 Score=299.75 Aligned_cols=241 Identities=17% Similarity=0.184 Sum_probs=187.8
Q ss_pred CHHHHHHcCCCCCCCcEEEee--CCcHHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCC
Q 024252 1 MIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~a--SsGN~g~alA~aa~~~G~~~~iv~p~~~~--------~~k~~~~~~~Ga~v~~~~~~ 70 (270)
|+.+|+++| ..+|+++ |+||||+|+|++|+++|++|++|++..++ ..|+.+++.|||+|+.++..
T Consensus 58 ~l~~a~~~G-----~~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~ 132 (337)
T PRK12390 58 LVPDALAQG-----ADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDG 132 (337)
T ss_pred HHHHHHHcC-----CCEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCC
Confidence 356677666 4678888 88999999999999999999999876544 23677899999999999863
Q ss_pred C--ChHHHHHHHHHHHHhCCCccc-cCCCCCC-CchhhhhhchHHHHHHh---hCCCCCEEEEecCCchhHHHHHHHhhh
Q 024252 71 R--GMKGAVQKAEEIRDKTPNSYV-LQQFENP-ANPKIHYETTGPEIWKG---TGGKIDALVSGIGTGGTVTGAGKYLKE 143 (270)
Q Consensus 71 ~--~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~~~~~G~~t~~~EI~~q---l~~~~d~iv~~vG~Gg~~aGi~~~~~~ 143 (270)
. .+.++.+.+.++.++..+..| ++++.++ .....||.++++||++| ++.+||+||+|+|+|||++|++.+||+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~ 212 (337)
T PRK12390 133 FDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAA 212 (337)
T ss_pred cchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHh
Confidence 1 233666666666666334334 5555433 12256888999999998 444799999999999999999999999
Q ss_pred cCCCeEEEEEecCCCccccCCCC---CCcccccCCCCC--Cc--cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech
Q 024252 144 HNPEIKLYGVEPVESAVLSGGKP---GPHKIQGIGAGF--IP--GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI 216 (270)
Q Consensus 144 ~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~--~~--~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep 216 (270)
..|++|||+|+|.+++.+...+. ..+..++++.+. .+ +.+..+++|++|.|+|+|++++++++++++||++||
T Consensus 213 ~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep 292 (337)
T PRK12390 213 DGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDP 292 (337)
T ss_pred cCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccc
Confidence 99999999999999876643211 122233444332 12 235678899999999999999999999999999999
Q ss_pred -hHHHHHHHHHHHhhcCC-CCCCeEEEEecCC
Q 024252 217 -SSGAATAAAIQIAKRPE-NAGKLIVVVFPSF 246 (270)
Q Consensus 217 -~sg~alaa~~~~~~~~~-~~~~~vv~i~t~g 246 (270)
|||+++++++++.+++. .++++||++||||
T Consensus 293 ~ysg~~~aa~~~~~~~g~~~~~~~vv~~htgg 324 (337)
T PRK12390 293 VYEGKSMHGMIDLVRKGEFPEGSKVLYAHLGG 324 (337)
T ss_pred cHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 59999999999998776 4778999999776
No 67
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.9e-40 Score=297.80 Aligned_cols=236 Identities=22% Similarity=0.283 Sum_probs=179.2
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCH--HHHHHHHHcCCEEEEeCCC-CChHHHH-HHHHHHHHhCCCcc
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSL--ERRMVLLAFGAELVLTDPA-RGMKGAV-QKAEEIRDKTPNSY 91 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~--~k~~~~~~~Ga~v~~~~~~-~~~~~~~-~~a~~~~~~~~~~~ 91 (270)
.|+++|+||||+|+|++|+++|++|+||||+. .+. .|+++|+.+||+|+.++.. +.+.++. +.++++.++.++.+
T Consensus 101 vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (385)
T TIGR00263 101 IIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTH 180 (385)
T ss_pred EEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCce
Confidence 45579999999999999999999999999985 343 5788999999999999853 3466664 34445555544555
Q ss_pred cc-CCCCC----CCchhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc---
Q 024252 92 VL-QQFEN----PANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--- 159 (270)
Q Consensus 92 ~~-~~~~~----~~~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~--- 159 (270)
|+ +++.+ +.++..||+|+++||++|+. ..||+||+|+|+||+++|++.++.. .|++|||+|||+++.
T Consensus 181 y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~ 259 (385)
T TIGR00263 181 YVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDT 259 (385)
T ss_pred EEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccc
Confidence 55 44432 23445899999999999983 2589999999999999999998855 699999999999852
Q ss_pred -----cccCCCCC--------------------CcccccCCCCCC-c--cccccccCCcEEEcCHHHHHHHHHHHHHHcC
Q 024252 160 -----VLSGGKPG--------------------PHKIQGIGAGFI-P--GVLDVNLLDETVQISSEEAIETAKLLALKEG 211 (270)
Q Consensus 160 -----~~~~~~~~--------------------~~~~~gl~~~~~-~--~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~g 211 (270)
++..+.+. .+...++..... | +.+.....++++.|+|+|+++++++|++++|
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~eg 339 (385)
T TIGR00263 260 DKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEG 339 (385)
T ss_pred hhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcC
Confidence 23333221 011122221111 1 1233456788999999999999999999999
Q ss_pred CeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 212 LLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 212 i~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++|+||+++++++++.++. .++++||+++||+|++|++++
T Consensus 340 i~~~~ssaaalaa~~~~~~~l-~~~~~Vv~i~~g~G~~d~~~~ 381 (385)
T TIGR00263 340 IIPALESSHALAHLEKIAPTL-PKDQIVVVNLSGRGDKDIFTI 381 (385)
T ss_pred CeechHHHHHHHHHHHHHHhC-CCCCeEEEEeCCCCcCCHHHH
Confidence 999999999999999987653 368899999999999998853
No 68
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=3.7e-41 Score=295.82 Aligned_cols=239 Identities=20% Similarity=0.168 Sum_probs=183.5
Q ss_pred CHHHHHHcCCCCCCCcEEEee--CCcHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAV 77 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~a--SsGN~g~alA~aa~~~G~~~~iv~p~~~-~~~k~~~~~~~Ga~v~~~~~~~~~~~~~ 77 (270)
|+..|+++| .++||++ |+||||+|+|++|+++|+++++|||+.. +..+...++.|||+|++++.. ++.+..
T Consensus 47 ~l~~a~~~g-----~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~ 120 (311)
T TIGR01275 47 LLADALSKG-----ADTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIM 120 (311)
T ss_pred HHHHHHHcC-----CCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhH
Confidence 355666666 4679998 6699999999999999999999999865 455677789999999999852 344444
Q ss_pred HHHHHHHH----hCCCc-cccCCCCCCCchhhhhhchHHHHHHhhCC--CCCEEEEecCCchhHHHHHHHhhhcCCCeEE
Q 024252 78 QKAEEIRD----KTPNS-YVLQQFENPANPKIHYETTGPEIWKGTGG--KIDALVSGIGTGGTVTGAGKYLKEHNPEIKL 150 (270)
Q Consensus 78 ~~a~~~~~----~~~~~-~~~~~~~~~~~~~~G~~t~~~EI~~ql~~--~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~v 150 (270)
+.+.++++ +.+.. ++.+++.||.+ ..|+.++++||++|++. .||+||+|+|||||++|++++||+++|+++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~v 199 (311)
T TIGR01275 121 KYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRP 199 (311)
T ss_pred HHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcE
Confidence 44444432 22223 45566778877 56777899999999963 6999999999999999999999999999999
Q ss_pred EEEecCCCccccCCC---CCCcccccCCCC-CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hHHHHHHHH
Q 024252 151 YGVEPVESAVLSGGK---PGPHKIQGIGAG-FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAA 225 (270)
Q Consensus 151 igV~~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~sg~alaa~ 225 (270)
|||+|..+....... ..++..++++.+ ...+.+..++.++.+.|+|+|+++++++|++++|+++|| |+|++++++
T Consensus 200 igV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~ 279 (311)
T TIGR01275 200 VGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGL 279 (311)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHH
Confidence 999987653211100 011233455433 223445567788899999999999999999999999999 699999999
Q ss_pred HHHhhcCCCCCCeEEEEecCC
Q 024252 226 IQIAKRPENAGKLIVVVFPSF 246 (270)
Q Consensus 226 ~~~~~~~~~~~~~vv~i~t~g 246 (270)
++++++...++++||+|+|||
T Consensus 280 ~~~~~~~~~~~~~vv~i~tGG 300 (311)
T TIGR01275 280 IDLIRKGELGEKGILFIHTGG 300 (311)
T ss_pred HHHHHhCCCCCCCEEEEECCC
Confidence 998876655577899999664
No 69
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1.3e-39 Score=294.08 Aligned_cols=250 Identities=23% Similarity=0.275 Sum_probs=187.9
Q ss_pred HHHHHcCCCCCCCcEEEe-eCCcHHHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHcCCEEEEeCCCCC------
Q 024252 3 ADAEEKGLIRPGESVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPARG------ 72 (270)
Q Consensus 3 ~~a~~~g~l~~g~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~---~~~~k~~~~~~~Ga~v~~~~~~~~------ 72 (270)
..+.++| .+.+++ +|+||||+|+|++|+++|++|+||||+. .++.|+.+|+.|||+|+.+++..+
T Consensus 119 ~~a~~~G-----~~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~ 193 (427)
T PRK12391 119 YYNKKEG-----IKRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKI 193 (427)
T ss_pred HHHHHCC-----CCEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhh
Confidence 3456666 334665 6799999999999999999999999974 356789999999999999985311
Q ss_pred ----------hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHH
Q 024252 73 ----------MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGK 139 (270)
Q Consensus 73 ----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~ 139 (270)
+..+++.+.+++.+.++.+|+..+.+ .+.+.||.++++||++|+. ..||+||+|+|+||+++|++.
T Consensus 194 ~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~-~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~ 272 (427)
T PRK12391 194 LAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVL-NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAF 272 (427)
T ss_pred hhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCC-cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Confidence 11245666777666545445544332 2357899999999999995 369999999999999999998
Q ss_pred Hhhh---cC-CCeEEEEEecCCCccccCCCC--------C--C-cccccCCCCCCccccc-----------------ccc
Q 024252 140 YLKE---HN-PEIKLYGVEPVESAVLSGGKP--------G--P-HKIQGIGAGFIPGVLD-----------------VNL 187 (270)
Q Consensus 140 ~~~~---~~-~~~~vigV~~~~~~~~~~~~~--------~--~-~~~~gl~~~~~~~~~~-----------------~~~ 187 (270)
+|.. .+ +++|||+|||.+++++..+.. . + ..+.+++.+++|..+. ...
T Consensus 273 ~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~ 352 (427)
T PRK12391 273 PFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEG 352 (427)
T ss_pred HHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcC
Confidence 7733 34 889999999999988865321 1 1 2344666554443321 233
Q ss_pred CCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCC--CCCCeEEEEecCCCCCCcchhhcHHHH
Q 024252 188 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE--NAGKLIVVVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 188 ~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~--~~~~~vv~i~t~gg~~~~~~~~~~~~~ 260 (270)
+.+.+.|+|+|+++++++|++++||+++|+||+++++++++.++.+ .++++||+++||+|++ |...|+++.
T Consensus 353 ~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~--d~~~y~~~l 425 (427)
T PRK12391 353 LIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHGLL--DLAAYDAYL 425 (427)
T ss_pred ceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCC--CHHHHHHHh
Confidence 4478999999999999999999999999999999999999887653 2467888888777875 444676654
No 70
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=6.5e-40 Score=292.92 Aligned_cols=246 Identities=26% Similarity=0.326 Sum_probs=182.9
Q ss_pred HHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC-C--HHHHHHHHHcCCEEEEeCC-CCChHHHHH
Q 024252 3 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-S--LERRMVLLAFGAELVLTDP-ARGMKGAVQ 78 (270)
Q Consensus 3 ~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~-~--~~k~~~~~~~Ga~v~~~~~-~~~~~~~~~ 78 (270)
..|.+.|+ .+.|+++|+||||+|+|++|+++|++|+||||+.. + ..|+.+|+.+||+|+.++. ...+.++.+
T Consensus 99 l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ 174 (397)
T PRK04346 99 LLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVN 174 (397)
T ss_pred HHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 34555562 23566689999999999999999999999999853 3 3577889999999999984 335666666
Q ss_pred HHHH-HHHhCCCcccc-CCCCC----CCchhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhcCCCe
Q 024252 79 KAEE-IRDKTPNSYVL-QQFEN----PANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEI 148 (270)
Q Consensus 79 ~a~~-~~~~~~~~~~~-~~~~~----~~~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~ 148 (270)
.+.+ +.++.++.+|+ .+..+ |.+...||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++
T Consensus 175 ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v 253 (397)
T PRK04346 175 EALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESV 253 (397)
T ss_pred HHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCC
Confidence 5554 45443344454 33322 33435699999999999984 3699999999999999999999976 7899
Q ss_pred EEEEEecCCCc--------cccCCCCC-------------------Ccc-cccCCCCCC-c--cccccccCCcEEEcCHH
Q 024252 149 KLYGVEPVESA--------VLSGGKPG-------------------PHK-IQGIGAGFI-P--GVLDVNLLDETVQISSE 197 (270)
Q Consensus 149 ~vigV~~~~~~--------~~~~~~~~-------------------~~~-~~gl~~~~~-~--~~~~~~~~~~~~~V~~~ 197 (270)
|||||||.++. ++..+++. .+. ..|+..+.+ | ..+.....++.+.|+|+
T Consensus 254 ~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~ 333 (397)
T PRK04346 254 RLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDD 333 (397)
T ss_pred eEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHH
Confidence 99999999862 22223221 011 122221111 1 22334556789999999
Q ss_pred HHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 198 EAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 198 e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++++++|++++||+++++|+.++++++++.++. .++++||+++||+|+||++++
T Consensus 334 eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l-~~~~~Vvv~lsGrG~kd~~~~ 389 (397)
T PRK04346 334 EALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVVNLSGRGDKDVFTV 389 (397)
T ss_pred HHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhc-CCCCeEEEEeCCCCccCHHHH
Confidence 99999999999999999999999999999886543 367899999999999998864
No 71
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=2.1e-40 Score=293.58 Aligned_cols=241 Identities=19% Similarity=0.238 Sum_probs=188.9
Q ss_pred CHHHHHHcCCCCCCCcEEEee--CCcHHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCC
Q 024252 1 MIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~a--SsGN~g~alA~aa~~~G~~~~iv~p~~~~--------~~k~~~~~~~Ga~v~~~~~~ 70 (270)
|+.+|.++| .++|+++ |+||||+|+|++|+++|++|+||+|+..+ ..|+.+++.|||+|+.++..
T Consensus 57 ~l~~a~~~G-----~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~ 131 (337)
T TIGR01274 57 LIPDAQAQG-----CTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG 131 (337)
T ss_pred HHHHHHHcC-----CCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc
Confidence 355666666 5678887 77999999999999999999999998543 57999999999999999853
Q ss_pred C--ChHHHHHHHHHHHHhCC-CccccCCCCC--CCchhhhhhchHHHHHHhh---CCCCCEEEEecCCchhHHHHHHHhh
Q 024252 71 R--GMKGAVQKAEEIRDKTP-NSYVLQQFEN--PANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLK 142 (270)
Q Consensus 71 ~--~~~~~~~~a~~~~~~~~-~~~~~~~~~~--~~~~~~G~~t~~~EI~~ql---~~~~d~iv~~vG~Gg~~aGi~~~~~ 142 (270)
. +..++...+.+..++.+ ..|+++.+.+ +.. ..|+.++++||++|+ +..||+||+|+|+|||++|++++++
T Consensus 132 ~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~ 210 (337)
T TIGR01274 132 FDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFA 210 (337)
T ss_pred ccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHH
Confidence 1 12355555555555542 3366666643 443 568899999999995 3469999999999999999999999
Q ss_pred hcCCCeEEEEEecCCCccccCCC---CCCcccccCCCCC--Cc--cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeec
Q 024252 143 EHNPEIKLYGVEPVESAVLSGGK---PGPHKIQGIGAGF--IP--GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVG 215 (270)
Q Consensus 143 ~~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~~~~--~~--~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~e 215 (270)
...+++|||+|+|.+++.+.... ...+.+++++.+. .+ +.+...++++.|.|+|+|+++++++|++++|+++|
T Consensus 211 ~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~e 290 (337)
T TIGR01274 211 ADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTD 290 (337)
T ss_pred HhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccC
Confidence 99999999999999997653221 1123334444322 11 35667788999999999999999999999999999
Q ss_pred h-hHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCC
Q 024252 216 I-SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGE 248 (270)
Q Consensus 216 p-~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~ 248 (270)
| |||+++++++++++++. .++++||+|||| |.
T Consensus 291 p~ytg~~~aa~~~~~~~g~~~~~~~vv~~htG-G~ 324 (337)
T TIGR01274 291 PVYEGKSMHGMIEMIRRGEFKEGSNVLYAHLG-GA 324 (337)
T ss_pred cchHHHHHHHHHHHHhcCCCCCCCEEEEEeCC-Ch
Confidence 9 69999999999998876 577899999966 54
No 72
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.6e-39 Score=293.16 Aligned_cols=248 Identities=23% Similarity=0.281 Sum_probs=186.7
Q ss_pred HHHHHHcCCCCCCCcEEE-eeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCCCChHH--
Q 024252 2 IADAEEKGLIRPGESVLI-EPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPARGMKG-- 75 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv-~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~~~~~~~-- 75 (270)
+..+.++|. ++++ ++|+||||+|+|++|+++|++|+||||+.. ++.|+.+|+.|||+|+.++.. +++
T Consensus 109 ~~~a~~~G~-----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~ 181 (419)
T TIGR01415 109 AYYAKIEGA-----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFG 181 (419)
T ss_pred HHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHH
Confidence 445666663 3456 468999999999999999999999999854 567899999999999999863 222
Q ss_pred ----------------HHHHHHHHHHhCC-CccccCCCCCCCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHH
Q 024252 76 ----------------AVQKAEEIRDKTP-NSYVLQQFENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVT 135 (270)
Q Consensus 76 ----------------~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~a 135 (270)
++..+.+.+++.+ ..|+.+++.|+ +..||.++|+||++|++. .||+||+|+|+||+++
T Consensus 182 r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~ 259 (419)
T TIGR01415 182 REVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFA 259 (419)
T ss_pred HHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHH
Confidence 2456666665543 44666665553 467999999999999964 4999999999999999
Q ss_pred HHHHHhhhc----CCCeEEEEEecCCCccccCCCC----------C-CcccccCCCCCCcccc-----------------
Q 024252 136 GAGKYLKEH----NPEIKLYGVEPVESAVLSGGKP----------G-PHKIQGIGAGFIPGVL----------------- 183 (270)
Q Consensus 136 Gi~~~~~~~----~~~~~vigV~~~~~~~~~~~~~----------~-~~~~~gl~~~~~~~~~----------------- 183 (270)
|++.+|.+. .+++|||+|||++++++..+.. . ...+.+++.+++|...
T Consensus 260 Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l 339 (419)
T TIGR01415 260 GLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLL 339 (419)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHH
Confidence 999888432 2579999999999988765431 0 1223455554433321
Q ss_pred ccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCC--CeEEEEecCCCCCCcchhhcHHHH
Q 024252 184 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAG--KLIVVVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 184 ~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~--~~vv~i~t~gg~~~~~~~~~~~~~ 260 (270)
.++.+.+.+.|+|+|+++++++|++++||+++|+||+++++++++.++.+..+ ++||+++||+|+++++ .|+++.
T Consensus 340 ~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~--~y~~~~ 416 (419)
T TIGR01415 340 VNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLK--AYAKYL 416 (419)
T ss_pred hhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHH--HHHHHh
Confidence 13444578999999999999999999999999999999999999887765323 3666777777886544 565543
No 73
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1.7e-39 Score=290.77 Aligned_cols=236 Identities=22% Similarity=0.305 Sum_probs=179.1
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHHHH-HHHHHHhCCCcc
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQK-AEEIRDKTPNSY 91 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~-~~~~~~~~~~-a~~~~~~~~~~~ 91 (270)
.|+++|+||||+|+|++|+++|++|+||||+.. ...|+.+|+.|||+|+.++. ..++.++... ++++.++..+.+
T Consensus 122 vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~ 201 (410)
T PLN02618 122 IIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTH 201 (410)
T ss_pred EEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCE
Confidence 344667999999999999999999999999853 35677799999999999954 3467777644 445666533445
Q ss_pred cc-CCCC--C--CCchhhhhhchHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCC----
Q 024252 92 VL-QQFE--N--PANPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES---- 158 (270)
Q Consensus 92 ~~-~~~~--~--~~~~~~G~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~---- 158 (270)
|+ .+.. + +.+...|++++|.||.+|+ +..||+||+|+|+||+++|++.+|+. .+++|||||||.++
T Consensus 202 yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~ 280 (410)
T PLN02618 202 YILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDS 280 (410)
T ss_pred EEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccc
Confidence 55 2221 2 2234579999999998776 34699999999999999999999975 78999999999997
Q ss_pred ----ccccCCCCC-------------------Cc-ccccCCCCC-Ccc--ccccccCCcEEEcCHHHHHHHHHHHHHHcC
Q 024252 159 ----AVLSGGKPG-------------------PH-KIQGIGAGF-IPG--VLDVNLLDETVQISSEEAIETAKLLALKEG 211 (270)
Q Consensus 159 ----~~~~~~~~~-------------------~~-~~~gl~~~~-~~~--~~~~~~~~~~~~V~~~e~~~a~~~l~~~~g 211 (270)
.++..+++. .+ ...++..+. -|. .+.....++.+.|+|+|+++++++|+++||
T Consensus 281 ~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eG 360 (410)
T PLN02618 281 GKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEG 360 (410)
T ss_pred cccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcC
Confidence 223333221 01 112232211 111 122346789999999999999999999999
Q ss_pred CeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 212 LLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 212 i~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++++|+++++++++++++. .++++||++++|+|+||++++
T Consensus 361 Ii~~~sSa~a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 361 IIPALETSHALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred ceEchhHHHHHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHH
Confidence 999999999999999998763 468899999999999999974
No 74
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.3e-39 Score=303.62 Aligned_cols=247 Identities=22% Similarity=0.262 Sum_probs=187.9
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHcCCEEEEeCCC-CChHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPA-RGMKGAV 77 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~---~~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~ 77 (270)
+..|.+.|.. +.|+++|+||||+|+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++.. .++.++.
T Consensus 371 i~~A~~~G~~----~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai 446 (695)
T PRK13802 371 ALLVKRMGKT----RVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAI 446 (695)
T ss_pred HHHHHHcCCC----CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHH
Confidence 4566777742 468899999999999999999999999999985 3678999999999999999843 3567775
Q ss_pred HHH-HHHHHhCC-CccccCCCCCC----CchhhhhhchHHHHHHhhCC-----CCCEEEEecCCchhHHHHHHHhhhcCC
Q 024252 78 QKA-EEIRDKTP-NSYVLQQFENP----ANPKIHYETTGPEIWKGTGG-----KIDALVSGIGTGGTVTGAGKYLKEHNP 146 (270)
Q Consensus 78 ~~a-~~~~~~~~-~~~~~~~~~~~----~~~~~G~~t~~~EI~~ql~~-----~~d~iv~~vG~Gg~~aGi~~~~~~~~~ 146 (270)
+.+ +++.++.+ .+|+++++.|| .++..||+++|.||++|+.. .||+||+|+|+||+++|++.+|++ .|
T Consensus 447 ~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~ 525 (695)
T PRK13802 447 NEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DE 525 (695)
T ss_pred HHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CC
Confidence 555 44555433 45677777654 34468999999999999952 699999999999999999999976 68
Q ss_pred CeEEEEEecCCCccccCCCCCCcccc---------------------------cCCCCC-----CccccccccCCcE--E
Q 024252 147 EIKLYGVEPVESAVLSGGKPGPHKIQ---------------------------GIGAGF-----IPGVLDVNLLDET--V 192 (270)
Q Consensus 147 ~~~vigV~~~~~~~~~~~~~~~~~~~---------------------------gl~~~~-----~~~~~~~~~~~~~--~ 192 (270)
.+|+|||||.++....+.+. .+... .+..+. -|..-.....+.+ +
T Consensus 526 ~vkligVE~~g~g~~~g~h~-~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~ 604 (695)
T PRK13802 526 RVNLYGYEAGGNGPESGKHA-IRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYS 604 (695)
T ss_pred CceEEEEEecCCCccccchh-hhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEE
Confidence 89999999999753321100 00001 111000 0111111223444 8
Q ss_pred EcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCC---CCCeEEEEecCCCCCCcchh
Q 024252 193 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPEN---AGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 193 ~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~---~~~~vv~i~t~gg~~~~~~~ 254 (270)
.|+|+|++++.+.|+++|||+++|+|++|++++++++++... .+++||+++||+|+||++++
T Consensus 605 ~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 605 WATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred EECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHH
Confidence 999999999999999999999999999999999999875432 25689999999999999974
No 75
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=3.5e-40 Score=291.65 Aligned_cols=241 Identities=24% Similarity=0.305 Sum_probs=187.2
Q ss_pred HHHHHHcCCCCCCCcEEEeeC--CcHHHHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHcCCEEEEeCCCC
Q 024252 2 IADAEEKGLIRPGESVLIEPT--SGNTGIGLAFMAAAKGYRLIITMPASMSL--------ERRMVLLAFGAELVLTDPAR 71 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aS--sGN~g~alA~aa~~~G~~~~iv~p~~~~~--------~k~~~~~~~Ga~v~~~~~~~ 71 (270)
|.+|.++| .++||++| +||||+|+|++|+.+|++|+||||+..+. .|+..++.+||+|+.++..+
T Consensus 56 l~~a~~~g-----~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~ 130 (331)
T PRK03910 56 LADALAQG-----ADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGT 130 (331)
T ss_pred HHHHHHcC-----CCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccc
Confidence 45566555 46788874 59999999999999999999999998775 45689999999999998753
Q ss_pred ChHH-HHHHHHHHHHhCCCcc-ccCCCCCCCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHhhhcCC
Q 024252 72 GMKG-AVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNP 146 (270)
Q Consensus 72 ~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~~~~~~ 146 (270)
+..+ +...++++.++.+..| +..++.|+.+ ..||.+++.||++|++. .||+||+|+|||||++|++++|++++|
T Consensus 131 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~ 209 (331)
T PRK03910 131 DMDAQLEELAEELRAQGRRPYVIPVGGSNALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGP 209 (331)
T ss_pred hHHHHHHHHHHHHHHcCCceEEECCCCCCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCC
Confidence 3333 3445666666543333 3456678877 56889999999999963 699999999999999999999999999
Q ss_pred CeEEEEEecCCCccccCCCC---CCcccccCCCC--C--CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hH
Q 024252 147 EIKLYGVEPVESAVLSGGKP---GPHKIQGIGAG--F--IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SS 218 (270)
Q Consensus 147 ~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~--~--~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~s 218 (270)
+++||||||++++.+....+ .....++++.+ . ..+.+.++++|+.+.|+|+|+++++++|++++||++|| ||
T Consensus 210 ~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ys 289 (331)
T PRK03910 210 DIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYT 289 (331)
T ss_pred CCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccH
Confidence 99999999998865432111 01122233322 1 12345678899999999999999999999999999999 59
Q ss_pred HHHHHHHHHHhhcCCC-CCCeEEEEecCCCCC
Q 024252 219 GAATAAAIQIAKRPEN-AGKLIVVVFPSFGER 249 (270)
Q Consensus 219 g~alaa~~~~~~~~~~-~~~~vv~i~t~gg~~ 249 (270)
|+++++++++.++... ++++||+|+|+ |+.
T Consensus 290 g~~~aa~~~~~~~~~~~~~~~Vv~i~tG-G~~ 320 (331)
T PRK03910 290 GKAMAGLIDLIRQGRFKKGGNVLFIHTG-GAP 320 (331)
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEECC-ChH
Confidence 9999999998876653 57899999854 663
No 76
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=8.8e-39 Score=280.18 Aligned_cols=234 Identities=40% Similarity=0.593 Sum_probs=184.2
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.+|+++| .++|+++|+||||+|+|++|+.+|++|++|+|+++++.|+++++.+||+|+.++. +++++.+.+.
T Consensus 48 l~~a~~~~-----~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~ 120 (306)
T PF00291_consen 48 LSRAKEKG-----GRTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--DVEGAFDDAQ 120 (306)
T ss_dssp HHHHHHTT-----TSEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--THHHHHHHHH
T ss_pred hhhccccc-----cceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEccc--cccccccccc
Confidence 45566663 5679999999999999999999999999999999999999999999999999985 3344444443
Q ss_pred HHHHhC-----CCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCE--EEEecCCchhHHHHHHHhhh--cCCCeEEEE
Q 024252 82 EIRDKT-----PNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDA--LVSGIGTGGTVTGAGKYLKE--HNPEIKLYG 152 (270)
Q Consensus 82 ~~~~~~-----~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~--iv~~vG~Gg~~aGi~~~~~~--~~~~~~vig 152 (270)
+++++. +..+.++|+ ++.+.+.||.++++||++|+. .||+ ||+|+|+||+++|++.+++. . |++|+|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vig 197 (306)
T PF00291_consen 121 ELAKERAELLSPFNGELNQY-NNPNVIAGYATIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIG 197 (306)
T ss_dssp HHHHHHHHHHHHSTTEESTT-TSHHHHHHHHHHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEE
T ss_pred cccccccccccccccccCcc-cchhhhhhhhhcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-cccccee
Confidence 333321 001115677 445558999999999999997 6665 99999999999999999999 7 8999999
Q ss_pred EecCCCcccc----CCCC----CCcccccCCCCC-Ccc----ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHH
Q 024252 153 VEPVESAVLS----GGKP----GPHKIQGIGAGF-IPG----VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSG 219 (270)
Q Consensus 153 V~~~~~~~~~----~~~~----~~~~~~gl~~~~-~~~----~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg 219 (270)
|++.+++++. .+.. ..+.+.+++.+. .+. .+.+++.++++.|+|+|+.+++++|++++|+++||+++
T Consensus 198 v~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a 277 (306)
T PF00291_consen 198 VEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSA 277 (306)
T ss_dssp EEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHH
T ss_pred eeccCCccccccccccccccccceeeeecccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHH
Confidence 9999997764 2332 113455776654 222 24456777889999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC---CCCCeEEEEecC
Q 024252 220 AATAAAIQIAKRPE---NAGKLIVVVFPS 245 (270)
Q Consensus 220 ~alaa~~~~~~~~~---~~~~~vv~i~t~ 245 (270)
+++++++++.++.. .++++||+|+||
T Consensus 278 ~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 278 AALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp HHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred HHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 99999999887764 378999999975
No 77
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=4.9e-38 Score=277.53 Aligned_cols=237 Identities=21% Similarity=0.289 Sum_probs=176.1
Q ss_pred CHHHHHHcCCCCCCCcEEE--eeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHcCCEEEEeCCCCC---hH
Q 024252 1 MIADAEEKGLIRPGESVLI--EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTDPARG---MK 74 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv--~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~-k~~~~~~~Ga~v~~~~~~~~---~~ 74 (270)
||.+|+++|. ++|| ++|+||||+|+|++|+++|++|++|+|...+.. +...++.+||+++.++...+ .+
T Consensus 61 ~l~~a~~~G~-----~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~ 135 (329)
T PRK14045 61 LLGDALSRGA-----DVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMK 135 (329)
T ss_pred HHHHHHHcCC-----CEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHH
Confidence 4566777763 5677 589999999999999999999999999865433 66678999999998874322 23
Q ss_pred HHHHHHHHHHHhCCCcccc-CCCCCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHHHhhhcCCCeEE
Q 024252 75 GAVQKAEEIRDKTPNSYVL-QQFENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKL 150 (270)
Q Consensus 75 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~v 150 (270)
.+.+.+.++.++.+..|++ +++.|+.++ .|+.+...||++|++ ..+|+||+|+|||||++|+++++|..+|++||
T Consensus 136 ~~~~~~~~l~~~~~~~~~~p~~~~n~~~~-~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kV 214 (329)
T PRK14045 136 YAEEVAEELKGEGRKPYIIPPGGASPVGT-LGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRV 214 (329)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCchhHH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeE
Confidence 4555666666555445554 455677774 555555559999996 36999999999999999999999999999999
Q ss_pred EEEecCCCccccCCCC-----CCcccccCCCCC-CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hHHHHHH
Q 024252 151 YGVEPVESAVLSGGKP-----GPHKIQGIGAGF-IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATA 223 (270)
Q Consensus 151 igV~~~~~~~~~~~~~-----~~~~~~gl~~~~-~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~sg~ala 223 (270)
|+|+|.+......++. ....+.+++.+. .+... +.+.|++..++ +|+++++++|++++||++|| |||++++
T Consensus 215 igv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~ 292 (329)
T PRK14045 215 VGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPELY-DYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFY 292 (329)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceEec-ccccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHH
Confidence 9999976332111100 112234444332 23223 33347755666 79999999999999999999 9999999
Q ss_pred HHHHHhhcCCCCCCeEEEEecCC
Q 024252 224 AAIQIAKRPENAGKLIVVVFPSF 246 (270)
Q Consensus 224 a~~~~~~~~~~~~~~vv~i~t~g 246 (270)
++++++++.. .+++||+|||||
T Consensus 293 a~~~~~~~~~-~~~~iv~ihtGG 314 (329)
T PRK14045 293 GLMDLAKKGE-LGEKILFIHTGG 314 (329)
T ss_pred HHHHHHHcCC-CCCCEEEEECCC
Confidence 9999998764 368999999776
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.1e-37 Score=290.59 Aligned_cols=236 Identities=22% Similarity=0.278 Sum_probs=177.9
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHHhCCCcc
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEE-IRDKTPNSY 91 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~ 91 (270)
.|+++|+||||+|+|++|+++|++|+||||+.. ...|+.+|+.+||+|+.++.. .++.++.+.+.+ +..+.++.+
T Consensus 321 vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~ 400 (610)
T PRK13803 321 IIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTH 400 (610)
T ss_pred EEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcE
Confidence 456789999999999999999999999999864 256888999999999999852 346666554444 434444566
Q ss_pred ccCCCC---C--CCchhhhhhchHHHHHHhhCC----CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc---
Q 024252 92 VLQQFE---N--PANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--- 159 (270)
Q Consensus 92 ~~~~~~---~--~~~~~~G~~t~~~EI~~ql~~----~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~--- 159 (270)
|++++. + |.++..||++++.||.+|+.. .||+||+|+|+||+++|++.+|++ .|++|||||||.++.
T Consensus 401 y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~ 479 (610)
T PRK13803 401 YLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNT 479 (610)
T ss_pred EEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCccc
Confidence 664432 2 333335899999999999842 599999999999999999999964 789999999999862
Q ss_pred -----cccCCCCC-------------------Cc-ccccCCCCCC-cc--ccccccCCcEEEcCHHHHHHHHHHHHHHcC
Q 024252 160 -----VLSGGKPG-------------------PH-KIQGIGAGFI-PG--VLDVNLLDETVQISSEEAIETAKLLALKEG 211 (270)
Q Consensus 160 -----~~~~~~~~-------------------~~-~~~gl~~~~~-~~--~~~~~~~~~~~~V~~~e~~~a~~~l~~~~g 211 (270)
++..+++. .+ ...|+..+.+ |. .+.....++.+.|+|+|+++++++|++++|
T Consensus 480 ~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eG 559 (610)
T PRK13803 480 GEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEG 559 (610)
T ss_pred ccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcC
Confidence 23333221 01 1123322111 11 122344567999999999999999999999
Q ss_pred CeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 212 LLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 212 i~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++++||+++++++++..+. .++++||+++||+|+||++++
T Consensus 560 i~~~~ssa~alA~~~~~~~~~-~~~~~Vvv~lsG~G~kd~~~~ 601 (610)
T PRK13803 560 IIPALESSHALAYLKEGRKKF-KKKDIVIVNLSGRGDKDIPTL 601 (610)
T ss_pred CccCcHHHHHHHHHHHhchhc-CCCCeEEEEeCCCCcCCHHHH
Confidence 999999999999999875442 357899999999999998853
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-35 Score=263.02 Aligned_cols=233 Identities=24% Similarity=0.298 Sum_probs=196.3
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.+|+++||||+|.|+|+++++.|++|+|++|.+ ++..|+.+|..+|++++.+++ +++++.+.+++++++. ++++..
T Consensus 127 ~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~ 203 (411)
T COG0498 127 KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAV 203 (411)
T ss_pred CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-Cceeec
Confidence 479999999999999999999999999999998 999999999999999999997 6899999999999865 556666
Q ss_pred CCCCCCchhhhhhchHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHhhhcCCC------eEEEEEecCCCccccCC-CC
Q 024252 95 QFENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPE------IKLYGVEPVESAVLSGG-KP 166 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~------~~vigV~~~~~~~~~~~-~~ 166 (270)
..-||.. +.||+|+++||++|++ ..||+|++|+|+||++.|++.+|++..|. ++..+|+++++.+.... +.
T Consensus 204 nsiNp~r-legq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~ 282 (411)
T COG0498 204 NSINPYR-LEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKE 282 (411)
T ss_pred cccCHHH-hhhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhccc
Confidence 6677776 7899999999999997 47999999999999999999999998764 78899999998776432 11
Q ss_pred ----CCcccccCCCCCCccccc------cccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCC
Q 024252 167 ----GPHKIQGIGAGFIPGVLD------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAG 236 (270)
Q Consensus 167 ----~~~~~~gl~~~~~~~~~~------~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~ 236 (270)
..+...+|..+ .|.++. ++..+..+.|||+|++++++++++++|+++||+||+++++++++.++...++
T Consensus 283 ~~~~~~T~a~am~I~-~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~ 361 (411)
T COG0498 283 GRETPETIAPAMDIG-NPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPD 361 (411)
T ss_pred ccccccccccccccC-CCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCC
Confidence 11222333322 243332 2234569999999999999999999999999999999999999988622567
Q ss_pred CeEEEEecCCCCCCcch
Q 024252 237 KLIVVVFPSFGERYLSS 253 (270)
Q Consensus 237 ~~vv~i~t~gg~~~~~~ 253 (270)
+++|+++|++|.|+.+.
T Consensus 362 ~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 362 ETVVLVLTGHGLKFPDT 378 (411)
T ss_pred CeEEEEecCCcccChhH
Confidence 89999999999999886
No 80
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.97 E-value=3.9e-29 Score=209.47 Aligned_cols=236 Identities=21% Similarity=0.244 Sum_probs=182.0
Q ss_pred CCCCCcEEEeeCC--cHHHHHHHHHHHHcCCcEEEEeCCCC----CHHHHHHHHHcCCEEEEeCCCCCh--HHHHHHHHH
Q 024252 11 IRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASM----SLERRMVLLAFGAELVLTDPARGM--KGAVQKAEE 82 (270)
Q Consensus 11 l~~g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~----~~~k~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~ 82 (270)
+++|++++|++.+ .||.+++|++|+++|++|+.++.... -..++...+.+|+++..++...+. +...+..++
T Consensus 60 l~~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e 139 (323)
T COG2515 60 LRKGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAE 139 (323)
T ss_pred hhcCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHH
Confidence 4556899999965 99999999999999999999998754 233677778899999999976555 333344444
Q ss_pred HHHhCCCcccc-CCCC-CCCchhhhhhchHHHHHHhhC--CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCC
Q 024252 83 IRDKTPNSYVL-QQFE-NPANPKIHYETTGPEIWKGTG--GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 158 (270)
Q Consensus 83 ~~~~~~~~~~~-~~~~-~~~~~~~G~~t~~~EI~~ql~--~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~ 158 (270)
..++.++..|+ +... ||.. ..||...+.||.+|.. -++|+||+++|||||.||++.++....++.+|||+....+
T Consensus 140 ~~~~~g~kpyvIp~GG~~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~ 218 (323)
T COG2515 140 EVRKQGGKPYVIPEGGSSPLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSAD 218 (323)
T ss_pred HHHhcCCCCcEeccCCcCccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCC
Confidence 44444454444 4444 4443 5699999999999986 4799999999999999999999999999999999988877
Q ss_pred ccccCCCC---CCcccccCCCC-CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hHHHHHHHHHHHhhcCC
Q 024252 159 AVLSGGKP---GPHKIQGIGAG-FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE 233 (270)
Q Consensus 159 ~~~~~~~~---~~~~~~gl~~~-~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~sg~alaa~~~~~~~~~ 233 (270)
......+. ..+.++.++.+ ...+.+..+|....|.++.+|.+++++.+++.|||++|| ++++++.+++++++++.
T Consensus 219 ~~~~~~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~ 298 (323)
T COG2515 219 PEKLKEQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGE 298 (323)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhccc
Confidence 54321111 11222223322 223456678899999999999999999999999999999 89999999999999887
Q ss_pred -CCCCeEEEEecCCC
Q 024252 234 -NAGKLIVVVFPSFG 247 (270)
Q Consensus 234 -~~~~~vv~i~t~gg 247 (270)
.++++|++|||||-
T Consensus 299 f~~~~~vLfiHtGG~ 313 (323)
T COG2515 299 FPDGSPVLFIHTGGA 313 (323)
T ss_pred CCCCCceEEEEcCCc
Confidence 46677899997763
No 81
>PRK09225 threonine synthase; Validated
Probab=99.96 E-value=1.5e-27 Score=217.18 Aligned_cols=230 Identities=15% Similarity=0.130 Sum_probs=174.4
Q ss_pred CcEEEeeCCcHHHHHH-HHHHHHcCCcEEEEeCCC-CCHHHHHHHHHc-CCEE--EEeCCCCChHHHHHHHHHHHHhC--
Q 024252 15 ESVLIEPTSGNTGIGL-AFMAAAKGYRLIITMPAS-MSLERRMVLLAF-GAEL--VLTDPARGMKGAVQKAEEIRDKT-- 87 (270)
Q Consensus 15 ~~~vv~aSsGN~g~al-A~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~-Ga~v--~~~~~~~~~~~~~~~a~~~~~~~-- 87 (270)
..+|+++||||+|.|+ |.++.+.|++|+|++|++ ++..++.+|..+ |++| +.+++ +++++.+.+.++.++.
T Consensus 131 ~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G--~fDD~q~~vk~~~~d~~~ 208 (462)
T PRK09225 131 KITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEG--NFDDCQALVKAAFNDEEL 208 (462)
T ss_pred CcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCC--CHHHHHHHHHHHhhchhh
Confidence 5689999999999998 799999999999999996 999999999999 9988 45554 6888888887765541
Q ss_pred ---CCccccCCCCCCCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 88 ---PNSYVLQQFENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 88 ---~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
-+++-.+.. |+.. +.||.++++|+++|+.. .||.|++|+|+||++.|.+.+.+.-.|-+|+|+++ ..++++
T Consensus 209 ~~~~~l~saNSi-N~~R-i~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l 285 (462)
T PRK09225 209 KEKLKLSSANSI-NIGR-LLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDVL 285 (462)
T ss_pred hhcCceEEEecc-CHHH-HHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChHH
Confidence 134444443 6665 78999999999999964 38999999999999999999844444667999997 333333
Q ss_pred c----CCCCC-----CcccccCCCCCCcccccc------------------c---cCC---------------cEEEcCH
Q 024252 162 S----GGKPG-----PHKIQGIGAGFIPGVLDV------------------N---LLD---------------ETVQISS 196 (270)
Q Consensus 162 ~----~~~~~-----~~~~~gl~~~~~~~~~~~------------------~---~~~---------------~~~~V~~ 196 (270)
. .|... .+...++..+ .|.++.+ . .-. ..+.|+|
T Consensus 286 ~~~~~~G~y~~~~~~~T~s~amdI~-~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD 364 (462)
T PRK09225 286 TRFLKTGVYDPRPTVATLSPAMDIS-VSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSD 364 (462)
T ss_pred HHHHHcCCCccCCCCCCcCchhhcC-CCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECH
Confidence 1 23211 1122222222 2333222 0 011 5688999
Q ss_pred HHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 197 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 197 ~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
+|+.++++++++++|+++||+||++++++.+++. +++++|++.|++|.|+.+.+
T Consensus 365 ~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~~----~~~~~V~l~Ta~p~Kf~~~v 418 (462)
T PRK09225 365 EETLATIREVYEEYGYLIDPHTAVAYKAAREYLD----PGEPGVVLSTAHPAKFPEVV 418 (462)
T ss_pred HHHHHHHHHHHHhCCEEECchHHHHHHHHHHhhC----CCCCEEEEecCCccCCHHHH
Confidence 9999999999999999999999999999987632 45689999999999987754
No 82
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.95 E-value=7.9e-27 Score=212.52 Aligned_cols=234 Identities=15% Similarity=0.102 Sum_probs=176.8
Q ss_pred CCcEEEeeCCcHHHHH-HHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCC---EEEEeCCCCChHHHHHHHHHHHHhC-
Q 024252 14 GESVLIEPTSGNTGIG-LAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGA---ELVLTDPARGMKGAVQKAEEIRDKT- 87 (270)
Q Consensus 14 g~~~vv~aSsGN~g~a-lA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~- 87 (270)
+..+|+++||||+|.| ++.++.+.|++|+|++|++ +++.++.+|..+|+ +++.+++ +++++.+.+.++.++.
T Consensus 131 ~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~ 208 (460)
T cd01560 131 ERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADED 208 (460)
T ss_pred CCeEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChh
Confidence 4668999999999999 5899999999999999986 99999999999997 7788886 6888888888775442
Q ss_pred ----CCccccCCCCCCCchhhhhhchHHHHHHhhCC----CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 88 ----PNSYVLQQFENPANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 88 ----~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~----~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
-+++-.+. -|+.. +.||.+..+|+++|+.. .|+.|+||+|+||++.|.+.+.+.-.|-+|+|++..++..
T Consensus 209 ~~~~~~l~saNS-iN~~R-i~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~i 286 (460)
T cd01560 209 FNKKLKLSSANS-INWAR-ILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDV 286 (460)
T ss_pred hHhcceEEEEec-cCHHH-HHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChH
Confidence 13333444 35655 78999999999999963 5899999999999999999997655577899997654432
Q ss_pred c---ccCCCC--CCcccccCCCCC---Ccccccc---cc---C------------------------------CcEEEcC
Q 024252 160 V---LSGGKP--GPHKIQGIGAGF---IPGVLDV---NL---L------------------------------DETVQIS 195 (270)
Q Consensus 160 ~---~~~~~~--~~~~~~gl~~~~---~~~~~~~---~~---~------------------------------~~~~~V~ 195 (270)
. +..|.. .+.....++.++ .|.++.+ .+ - -..+.|+
T Consensus 287 l~~~~~~G~y~~~~~~~~T~spamdI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vs 366 (460)
T cd01560 287 LRRFFKTGRYDRRESLKQTLSPAMDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVS 366 (460)
T ss_pred HHHHHHcCCCcCCCCCCCCcCchhhcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEEC
Confidence 1 112322 111222222211 2333221 00 0 1468999
Q ss_pred HHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 196 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 196 ~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+|+.++++.+++++|+++||+||++++++.++.++ +++++|++.|++|.|+.+.+
T Consensus 367 D~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~---~~~~~V~l~Ta~p~Kf~~~v 422 (460)
T cd01560 367 DEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS---PGTPGVVLSTAHPAKFPEAV 422 (460)
T ss_pred HHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc---cCCCEEEEecCCcccCHHHH
Confidence 999999999999999999999999999999887654 34678999999999987753
No 83
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=195.23 Aligned_cols=239 Identities=26% Similarity=0.323 Sum_probs=175.0
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHH-hCCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEEIRD-KTPN 89 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~-~~~~ 89 (270)
.+.|.+...|.||.|+|.+|+++|++|+|||.... ...++.+|+.+||+|+.|.. +..+.++...+.+.+- .-..
T Consensus 104 ~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ 183 (396)
T COG0133 104 TRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVED 183 (396)
T ss_pred ceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhcccc
Confidence 34677888899999999999999999999998632 34567789999999998864 4567788877765543 3334
Q ss_pred ccccC-----CCCCCCchhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc-
Q 024252 90 SYVLQ-----QFENPANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA- 159 (270)
Q Consensus 90 ~~~~~-----~~~~~~~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~- 159 (270)
.+|+. |..-|......++.||.|.-+|+. ..||+|+.|+|+|++..|+..-|-. .+++++||||+.+.-
T Consensus 184 ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi 262 (396)
T COG0133 184 THYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGI 262 (396)
T ss_pred ceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCcc
Confidence 55542 222244445689999999988863 3599999999999999999888765 467999999998753
Q ss_pred -------cccCCCCCC-----c--------c---cccCCCCC----C-ccc--cccccCCcEEEcCHHHHHHHHHHHHHH
Q 024252 160 -------VLSGGKPGP-----H--------K---IQGIGAGF----I-PGV--LDVNLLDETVQISSEEAIETAKLLALK 209 (270)
Q Consensus 160 -------~~~~~~~~~-----~--------~---~~gl~~~~----~-~~~--~~~~~~~~~~~V~~~e~~~a~~~l~~~ 209 (270)
++..|++.- + . ..+|+.+. + |.. +...-.-+.+.|+|+|++++.+.|.+.
T Consensus 263 ~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~ 342 (396)
T COG0133 263 ETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRL 342 (396)
T ss_pred CCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHh
Confidence 333333310 0 0 01222221 0 111 112223468899999999999999999
Q ss_pred cCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchhh
Q 024252 210 EGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 255 (270)
Q Consensus 210 ~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~~ 255 (270)
|||+..-.|+.|++.++++..+.. +++.+|+-+++.|+|++.++.
T Consensus 343 EGIIPALESsHAlA~a~kla~~~~-~~~~ivvnlSGRGDKDv~tv~ 387 (396)
T COG0133 343 EGIIPALESSHALAYALKLAPKLP-KDEIIVVNLSGRGDKDVFTVA 387 (396)
T ss_pred cCcchhhhhHHHHHHHHHhchhcC-CCcEEEEEccCCCcccHHHHH
Confidence 999999999999999999986653 556788888889999988643
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.91 E-value=4.4e-23 Score=174.04 Aligned_cols=245 Identities=24% Similarity=0.299 Sum_probs=175.8
Q ss_pred CCcEEEee-CCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCCCC----------------h
Q 024252 14 GESVLIEP-TSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPARG----------------M 73 (270)
Q Consensus 14 g~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~~~~----------------~ 73 (270)
|...|+|= ..|.+|.|++++|+.+|++|+|||-+.. .+-+..+|+.|||+|+..+.... +
T Consensus 126 g~~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSL 205 (432)
T COG1350 126 GAKRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSL 205 (432)
T ss_pred CceeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchh
Confidence 45555554 5699999999999999999999998733 45677889999999998764211 1
Q ss_pred HHHHHHHHHHHHhCCCc-cccCCCCCCCchhhhhhchHHHHHHhh---CCCCCEEEEecCCchhHHHHHHHhhhc---C-
Q 024252 74 KGAVQKAEEIRDKTPNS-YVLQQFENPANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLKEH---N- 145 (270)
Q Consensus 74 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~G~~t~~~EI~~ql---~~~~d~iv~~vG~Gg~~aGi~~~~~~~---~- 145 (270)
.-++..|.+.+-++++. |.+...-| ....|+..+|+|..+|+ +..||.++.|||+|++++|+..-|-.. .
T Consensus 206 GIAISEAiE~al~~~~~kY~lGSVln--hvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~ 283 (432)
T COG1350 206 GIAISEAIEYALKNENTKYSLGSVLN--HVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGK 283 (432)
T ss_pred HHHHHHHHHHHHhCCCceecchhHHH--HHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCC
Confidence 12456666666555433 33333222 23679999999996655 567999999999999999996655332 1
Q ss_pred CCeEEEEEecCCCccccCCCCCC-----------cccccCCCCCCccccc-----------------cccCCcEEEcCHH
Q 024252 146 PEIKLYGVEPVESAVLSGGKPGP-----------HKIQGIGAGFIPGVLD-----------------VNLLDETVQISSE 197 (270)
Q Consensus 146 ~~~~vigV~~~~~~~~~~~~~~~-----------~~~~gl~~~~~~~~~~-----------------~~~~~~~~~V~~~ 197 (270)
...++|+|+|..++.+..|...- ..+-.+|.+++|..+. +.-+-+....+.+
T Consensus 284 ~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~ 363 (432)
T COG1350 284 KETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQE 363 (432)
T ss_pred ceeEEEEeCCccCCccccceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChH
Confidence 23899999999999987654321 1223555555544322 3344568899999
Q ss_pred HHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCC--CCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 198 EAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPEN--AGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 198 e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~--~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
|++++.+.|++.|||+..|.|+.|+.++++.+.+.+. +.+.|+|-++|+|.-++ .-|++..+-
T Consensus 364 Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL--~~Y~~yl~g 428 (432)
T COG1350 364 EVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDL--SAYDKYLEG 428 (432)
T ss_pred HHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccch--hhHHHHhhh
Confidence 9999999999999999999999999999998876653 34566666767777444 466666543
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.89 E-value=1e-21 Score=167.19 Aligned_cols=247 Identities=22% Similarity=0.262 Sum_probs=167.0
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHHHH
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQK 79 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~-~~~~~~~~~~ 79 (270)
+|+-..++-+ +..|.+...|.||.|+|.+|+++|++|+|+|-.+. ...++.+||.+||+|+.+.. ...++++...
T Consensus 162 QallakrlGk-knviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~se 240 (477)
T KOG1395|consen 162 QALLAKRLGK-KNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSE 240 (477)
T ss_pred HHHHHHHhcc-cceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccch
Confidence 4444444443 23567778899999999999999999999998632 45678899999999998874 2234444444
Q ss_pred HHHHHHhC-CCcccc-----CCCCCCCchhhhhhchHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHhhhcCCCeE
Q 024252 80 AEEIRDKT-PNSYVL-----QQFENPANPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIK 149 (270)
Q Consensus 80 a~~~~~~~-~~~~~~-----~~~~~~~~~~~G~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~ 149 (270)
+-++.-.+ .-.+|+ .|+--|.....-+.+|+.|-..|. +..||.||.|+|+|++.+|+..-|.. ...++
T Consensus 241 a~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~ 319 (477)
T KOG1395|consen 241 AGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVG 319 (477)
T ss_pred hhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-cchhh
Confidence 44333221 112232 122222222346788888876654 34699999999999999999888775 33478
Q ss_pred EEEEecCCCcc--------ccCCCCCC-------cccc---------cCCCCC-----Ccc--ccccccCCcEEEcCHHH
Q 024252 150 LYGVEPVESAV--------LSGGKPGP-------HKIQ---------GIGAGF-----IPG--VLDVNLLDETVQISSEE 198 (270)
Q Consensus 150 vigV~~~~~~~--------~~~~~~~~-------~~~~---------gl~~~~-----~~~--~~~~~~~~~~~~V~~~e 198 (270)
.|+|+..+... +..++... ...+ .|..+. -|. .+......+++.++|.|
T Consensus 320 ~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~e 399 (477)
T KOG1395|consen 320 MIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAE 399 (477)
T ss_pred eeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHH
Confidence 88988776532 22222210 0011 121111 111 11122345799999999
Q ss_pred HHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcch
Q 024252 199 AIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 199 ~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~ 253 (270)
.+++.+.|++.|||+..+.+..|+++..++.+.. .+++.||+-+||+|+|++.+
T Consensus 400 clegfk~~srlEGIIPAlEssHAva~~~~lck~l-~~~k~ivi~~sGrGdkDvqS 453 (477)
T KOG1395|consen 400 CLEGFKQLSRLEGIIPALESSHAVAGEAELCKTL-PEDKVIVINISGRGDKDVQS 453 (477)
T ss_pred HHHHHHHHHHhcccccCCchhhHHHHHHHhcccc-CCCcEEEEEecCCCCchHHH
Confidence 9999999999999999999999999988776554 47889999999999998874
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.86 E-value=3.6e-21 Score=161.18 Aligned_cols=229 Identities=19% Similarity=0.214 Sum_probs=190.0
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
.|...|+||.|.++-..++.+|++++|-|+.++..+|.+.+|..|.+|+.... +|..+.+.-++.++.+|..||++.-
T Consensus 162 sIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP~c~FiDDE 239 (443)
T COG3048 162 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDPNCFFIDDE 239 (443)
T ss_pred eEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCCceEEeccc
Confidence 58889999999999999999999999999999999999999999999999984 7899999999999999999999887
Q ss_pred CCCCchhhhhhchHHHHHHhhCC--------CCCEEEEecCCchhHHHHHHHhhhcC-CCeEEEEEecCCCccccCC---
Q 024252 97 ENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAVLSGG--- 164 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~~--------~~d~iv~~vG~Gg~~aGi~~~~~~~~-~~~~vigV~~~~~~~~~~~--- 164 (270)
++... ..||...+..+-.|+.. .|-.|.+|||-||...|++.++|..+ .++.++-+||..+|++.-|
T Consensus 240 ~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~t 318 (443)
T COG3048 240 NSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYT 318 (443)
T ss_pred chhhh-hhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhh
Confidence 66554 68999999999999842 47799999999999999999999986 5699999999999987521
Q ss_pred -C-----------CCCcccccCCCCCCcc---ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHh
Q 024252 165 -K-----------PGPHKIQGIGAGFIPG---VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 229 (270)
Q Consensus 165 -~-----------~~~~~~~gl~~~~~~~---~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~ 229 (270)
. ...+-.+|++.+.... .+...+++..|+|+|+...+....|++.+|+.+|||+-+++.+..++.
T Consensus 319 GlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~ 398 (443)
T COG3048 319 GLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVC 398 (443)
T ss_pred ccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceee
Confidence 1 1234456777665222 234578899999999999999999999999999999888877766553
Q ss_pred hcC------------CCCCCeEEEEecCCCC
Q 024252 230 KRP------------ENAGKLIVVVFPSFGE 248 (270)
Q Consensus 230 ~~~------------~~~~~~vv~i~t~gg~ 248 (270)
+.. +..+-+=+++.|+||.
T Consensus 399 ~~~~g~~~~~~~~~~~~~natHlvWaTGG~M 429 (443)
T COG3048 399 ASVEGYRYRHGFSAEQLNNATHLVWATGGGM 429 (443)
T ss_pred echhHHHHHhhchhhhhcCeeEEEEecCCCc
Confidence 211 1344566888888875
No 87
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=94.15 E-value=0.1 Score=42.89 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=50.1
Q ss_pred EEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcc
Q 024252 191 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 191 ~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~ 252 (270)
...||++|..+++...++..+.+++|.+|++.-...+.+.+.. +.-.++++.|.+..|+-+
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~lstAh~aKFa~ 208 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLSTAHPAKFAE 208 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEecccChhhhhH
Confidence 4568999999999999999999999999999999998887754 345567777777666544
No 88
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=90.41 E-value=1.9 Score=34.37 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCcEE-EEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhh
Q 024252 27 GIGLAFMAAAKGYRLI-ITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 105 (270)
Q Consensus 27 g~alA~aa~~~G~~~~-iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G 105 (270)
|..+.++++.+|.++. -+.+.+--..-++.+...|-.|.++++.. ....+.+..+.++.|+.-.+.-++-+.. ..-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~--~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSE--EVLEKAAANLRRRYPGLRIVGYHHGYFD-EEE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHHHCCCeEEEEecCCCCC-hhh
Confidence 5789999999998863 22222223344556677889999999742 3344455666677665433322211111 111
Q ss_pred hhchHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEE
Q 024252 106 YETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 153 (270)
Q Consensus 106 ~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV 153 (270)
.. +|.+++. ..||.|+++.|+---=.=+ ...+...+..-+++|
T Consensus 90 ~~----~i~~~I~~~~pdiv~vglG~PkQE~~~-~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 90 EE----AIINRINASGPDIVFVGLGAPKQERWI-ARHRQRLPAGVIIGV 133 (172)
T ss_pred HH----HHHHHHHHcCCCEEEEECCCCHHHHHH-HHHHHHCCCCEEEEE
Confidence 23 3444432 3599999999986544222 233333333334444
No 89
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.03 E-value=2.2 Score=38.00 Aligned_cols=62 Identities=24% Similarity=0.271 Sum_probs=49.7
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+++++..++||.+ |....-|-.|....-+|+.+|.+++.+ +.+..|++..+.+||+.+....
T Consensus 157 ~alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 157 RALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred eehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcC
Confidence 3677788999975 788888878888888888899887777 4567889999999998887764
No 90
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.81 E-value=3.4 Score=35.93 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=43.0
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+.+++|.+.+|...+|.-|.++.-.|+.+|.+++.+. .++.|.+.++.+|++-++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVF 193 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 457788887766776789999999999999999755443 345778888889985443
No 91
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.75 E-value=3.7 Score=36.44 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=42.7
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
++.+..+++|.+.+| ..+|..|.+++.+|+.+|.+++++ +.++.|++.++.+|++.++.
T Consensus 158 a~~~~~~~~g~~VlV-~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDLVIV-IGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 455567788876444 445999999999999999964433 23567888888999975443
No 92
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.44 E-value=4.3 Score=36.89 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=43.7
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
++.+..+.+|.+.+| ..+|--|..++..|+.+|.+.+++.. ..+.|++..+.+|++.
T Consensus 177 a~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 177 GAVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCET 233 (393)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeE
Confidence 455677888876555 67799999999999999988766432 3467888889999974
No 93
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.71 E-value=3.5 Score=36.64 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 11 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 11 l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+.+|.+.+|. .+|.-|...+..++.+|.+++++.+...++.|++.++.+|++.
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 4577765555 5799999999999999997666655445678888999999985
No 94
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=86.68 E-value=5 Score=35.53 Aligned_cols=57 Identities=28% Similarity=0.481 Sum_probs=45.0
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
.+.+++|.+.+|...+|.-|..+--.|+.+|...++.+. +..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 578899998889999999999999999999984444432 346667899999976654
No 95
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=86.58 E-value=7.7 Score=34.28 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=39.7
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+....+.+|.+.+|.+ +|..|.+++..|+.+|.+.++++. .+..|.+.++.+|++.++
T Consensus 165 l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 165 VRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVL 222 (351)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 4556677887655654 688999999999999985444442 355667777778875443
No 96
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.50 E-value=4.6 Score=34.63 Aligned_cols=58 Identities=31% Similarity=0.323 Sum_probs=39.6
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++++....+|.+. +....|.-|..++..|+.+|.+.++++ +.++.|++..+.+|++.+
T Consensus 112 al~~~~~~~g~~V-lV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 169 (280)
T TIGR03366 112 ALEAAGDLKGRRV-LVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATAL 169 (280)
T ss_pred HHHhccCCCCCEE-EEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEe
Confidence 4444445577654 444668899998889999998744444 345677888888888543
No 97
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=86.46 E-value=7 Score=31.10 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhh
Q 024252 27 GIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 105 (270)
Q Consensus 27 g~alA~aa~~~G~~~~iv~p~-~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G 105 (270)
|..+.++++.+|.+..--++. +--..-++.+...+..|.++++.. +...+.++.+.++.|+...+..++.+.. ...
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~--~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKP--EVLEKAAERLRARYPGLKIVGYHHGYFG-PEE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCH--HHHHHHHHHHHHHCCCcEEEEecCCCCC-hhh
Confidence 568899999999882222222 111233455666789999999642 3333444566667666443322222221 111
Q ss_pred hhchHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEE
Q 024252 106 YETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 153 (270)
Q Consensus 106 ~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV 153 (270)
. .+|.+++. ..||.|+++.|+---=.=+ ...+...+..-+++|
T Consensus 88 ~----~~i~~~I~~~~pdiv~vglG~PkQE~~~-~~~~~~l~~~v~~~v 131 (171)
T cd06533 88 E----EEIIERINASGADILFVGLGAPKQELWI-ARHKDRLPVPVAIGV 131 (171)
T ss_pred H----HHHHHHHHHcCCCEEEEECCCCHHHHHH-HHHHHHCCCCEEEEe
Confidence 1 12444443 3599999999986544222 333333344445555
No 98
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=86.45 E-value=8.7 Score=34.17 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=41.3
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.+.+.+++|.+.+|. .+|--|.+++..|+.+|.+.++++. .++.|++.++.+|++-+
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~ 225 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHT 225 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceE
Confidence 445678888776665 5688999999999999986444443 34567888888888543
No 99
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=86.28 E-value=5.5 Score=35.04 Aligned_cols=57 Identities=30% Similarity=0.412 Sum_probs=43.4
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+++.+.+.+|.+.+|...+|..|.+++..|+.+|.+++++.+. . ++..++.+|++.+
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~ 225 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTV 225 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEE
Confidence 3456778888887777777999999999999999996555432 2 6777788898643
No 100
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=86.16 E-value=5 Score=35.20 Aligned_cols=60 Identities=23% Similarity=0.177 Sum_probs=45.4
Q ss_pred HcCCCCCCCcEEEeeCC---cHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPTS---GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSs---GN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~~~~~Ga~v~~~~ 68 (270)
..|.++ |.+ |+-... +|.++|+..+++++|++++++.|+.- ++..+..++.+|+++...+
T Consensus 144 ~~g~l~-g~~-va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 144 EFGRLD-GLK-IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred HhCCCC-CCE-EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 346554 444 555555 69999999999999999999999864 5555667777899888766
No 101
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=85.53 E-value=9.7 Score=33.63 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=42.2
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+....+.+|.+.+| ..+|..|.++...|+.+|...++++.. ++.|...++.+|++.+
T Consensus 167 ~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 167 VDRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 35667888876555 667999999999999999876666544 4567777788888544
No 102
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=85.35 E-value=4.4 Score=35.74 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=41.3
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++.+..+++|.+.+|.. .|.-|.+++..|+.+|.+++++. .++.|++.++.+||+.+
T Consensus 157 ~~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~---~~~~~~~~a~~~Ga~~v 213 (329)
T TIGR02822 157 ALLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMT---RGAAARRLALALGAASA 213 (329)
T ss_pred HHHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEe---CChHHHHHHHHhCCcee
Confidence 44567788887655554 58889998999999998744432 24567888899999654
No 103
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=85.34 E-value=8.2 Score=33.67 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=43.0
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+.+++|.+.+|...+|--|.+++..|+..|.+++++.+ +..|.+.++.+|++.++
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAF 188 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 5677888877666666799999999999999987555433 45678888889986544
No 104
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=85.14 E-value=8.6 Score=34.41 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=40.4
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+...+++|.+.+|. .+|--|..++..|+.+|.+.++++. .++.|++.++.+|++.+
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~ 240 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATAT 240 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceE
Confidence 45677888776665 5688999999999999985344432 35677888888998543
No 105
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.71 E-value=7.3 Score=34.44 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=41.1
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
++.+....+|.+.+|. .+|.-|++....++.+|.+.++++. .++.|++..+.+|++.++
T Consensus 161 al~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 161 AAHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 3444445567665554 5699999999999999986444443 346788888889987544
No 106
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.35 E-value=11 Score=33.12 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=42.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-cCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~-~Ga~v~ 65 (270)
+.+.+++|.+.+|...+|.-|.++...|+.+|.++++..+ +..|.+.++. +|++-+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDA 201 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCcee
Confidence 4567888888777777899999999999999998554432 3577777777 888543
No 107
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=83.93 E-value=6.2 Score=32.66 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=42.2
Q ss_pred EEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 18 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+|+..+|+.|+.++-+....+.+++++++.. +..+.+.++..|++++..+-
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~ 52 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY 52 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc
Confidence 5778899999999999999999999998874 55567778899999986653
No 108
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.14 E-value=11 Score=32.96 Aligned_cols=59 Identities=29% Similarity=0.374 Sum_probs=40.7
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
++.+..+.+|.+.+|. .+|--|.+++..|+.+|.+-++++. .++.|++.++.+|++.++
T Consensus 155 ~l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 155 ALRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVI 213 (339)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 4455567788776665 5688999999999999988333332 345677777888885443
No 109
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.99 E-value=34 Score=30.53 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=46.2
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-cCCEEEEeCC
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAELVLTDP 69 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~-~Ga~v~~~~~ 69 (270)
|..++....+ +|+...+|.-|...+..++.+|...+|++. .++.|++..+. .|++++....
T Consensus 161 a~~~~~~~~~--~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d--~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 161 AERAAVRPGG--TVVVVGAGPIGLLAIALAKLLGASVVIVVD--RSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred hhccCCCCCC--EEEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHhCCCeEeecCc
Confidence 4444444444 699999999999999999999998888873 46778888876 7777666554
No 110
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.55 E-value=13 Score=33.09 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=40.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~-~~Ga~v~~ 66 (270)
+.+.+++|.+.+|...+|--|..+...|+.+|.+++++. .+..|.+.++ .+|++-++
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEE
Confidence 346788887766777779999998889999998744432 3456777776 68885443
No 111
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=82.47 E-value=8.9 Score=33.84 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.+...+.+|.+.+|. .+|..|.++...|+.+|.+.++++. .++.|++.++.+|++-+
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQT 209 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceE
Confidence 445667788765555 5789999999999999987554443 24567777788888543
No 112
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.39 E-value=10 Score=33.48 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=47.0
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
++.+-.+.||+..-|.--.| .|.----+|+.+|++++++-.. +..|.+.++.+||+..+...
T Consensus 173 pLk~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hhHHcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 45666677998644444445 8888888999999999988433 44678889999999988775
No 113
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.34 E-value=15 Score=32.47 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=52.4
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+|.+++.+++|.+ ++.-..|--|..+-..|+.+|-+=++++. ..+.|++..+.+||+++.-..
T Consensus 160 HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 160 HACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeecc
Confidence 4778999999975 88899999999999999999987666654 467888888899999876654
No 114
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=82.25 E-value=13 Score=32.06 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=36.1
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+....+.+|.+.+|...+|.-|.+++..|+.+|.+.+++... ..+.+.++.+|++
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~ 186 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIG 186 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCC
Confidence 344667777765555567888888888888888876555332 3445555556663
No 115
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=82.21 E-value=7.9 Score=33.57 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=39.5
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+.+.+.+++|.+.+|. .+|-.|.+++..|+.+|.+.+++ . .++.+.+.++.+|++.
T Consensus 147 ~~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~-~--~~~~~~~~~~~~g~~~ 202 (319)
T cd08242 147 ILEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV-G--RHSEKLALARRLGVET 202 (319)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE-c--CCHHHHHHHHHcCCcE
Confidence 3456778888776665 47888888888999999884443 2 2356777777788754
No 116
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.99 E-value=14 Score=32.43 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=37.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
..-.+.+|.+.+|.. +|..|.+++..|+.+|.+.+++.+ +..++..++.+|++-
T Consensus 157 ~~~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~ 210 (333)
T cd08296 157 RNSGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHH 210 (333)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcE
Confidence 344667776655554 899999999999999987554433 345677778888743
No 117
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.75 E-value=17 Score=32.10 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=40.3
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+....+++|.+.+|. .+|..|.+++..|+.+|.+.++.+.. +..|....+.+|++-
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 214 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATD 214 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCce
Confidence 456678888776665 57899999999999999865554433 346677778888743
No 118
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=81.54 E-value=16 Score=32.03 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=36.5
Q ss_pred HcCCCCCC--CcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHH-cCCEEEE
Q 024252 7 EKGLIRPG--ESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLA-FGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g--~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~~~~~~k~~~~~~-~Ga~v~~ 66 (270)
+.+.+++| .+.+|...+|.-|.++...|+.+|. +++++.+ +..|.+.++. +|++-++
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi 206 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAI 206 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEE
Confidence 34556665 5555655668888888888888887 4544432 3456666654 8875543
No 119
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=81.41 E-value=7.8 Score=32.09 Aligned_cols=56 Identities=30% Similarity=0.341 Sum_probs=40.7
Q ss_pred HHHHcCCCCCCCcEEEee-CCc---HHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCC
Q 024252 4 DAEEKGLIRPGESVLIEP-TSG---NTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGA 62 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~a-SsG---N~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga 62 (270)
.|+..|+.. +.+|++ |.| .+.++||.||++-|=..+.++|.... ..-.+.|..+|.
T Consensus 34 SAlAAG~nA---kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 34 SALAAGWNA---KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHhccccc---eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 588888765 346655 555 36899999999999999999998654 344555555564
No 120
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=81.38 E-value=14 Score=33.52 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=47.7
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
.+..+..+||..+..+|+-+-..|=.-.|++|.-+.....+.+-..||+.+++|-+
T Consensus 49 ~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 49 VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 56788889999999998886456666789999989999999999999999999853
No 121
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=81.06 E-value=17 Score=31.86 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=37.6
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
...+.+|...+|...+|..|.+++..|+.+|.+++++.+ ++.+.+.++.+|++-
T Consensus 160 ~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 213 (341)
T cd08297 160 KAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDV---GDEKLELAKELGADA 213 (341)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCcE
Confidence 346777777666667777999999999999987655533 345666667777643
No 122
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.82 E-value=18 Score=31.70 Aligned_cols=54 Identities=28% Similarity=0.445 Sum_probs=39.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
....+.+|...+| ..+|..|.++...|+..|.+.++.+.. +..|...++.+|++
T Consensus 162 ~~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~ga~ 215 (345)
T cd08287 162 VSAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSR--HEDRQALAREFGAT 215 (345)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCc
Confidence 3556778876666 458999999999999999875555543 34567777888884
No 123
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=80.80 E-value=3.3 Score=37.08 Aligned_cols=56 Identities=25% Similarity=0.218 Sum_probs=44.4
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
.+.++..+||..+.-+|+.+..++=.-.|++|..+.......+...|+++++++-+
T Consensus 40 ~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 40 VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 56799999999999999988443333788899989999999999999999999853
No 124
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.57 E-value=8.9 Score=28.33 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=20.6
Q ss_pred CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEe
Q 024252 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 154 (270)
Q Consensus 120 ~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~ 154 (270)
.+|.+|-++|++.++.-....+ .+.-+++-+-
T Consensus 58 ~~d~vid~~g~~~~~~~~~~~l---~~~G~~v~vg 89 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQEAIKLL---RPGGRIVVVG 89 (130)
T ss_dssp SEEEEEESSSSHHHHHHHHHHE---EEEEEEEEES
T ss_pred cceEEEEecCcHHHHHHHHHHh---ccCCEEEEEE
Confidence 5899999999877665544443 3444555553
No 125
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=79.81 E-value=17 Score=31.89 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=48.1
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-cCCEEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAELVL 66 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~-~Ga~v~~ 66 (270)
.+.-|+.++|.+.+|++-+|--|.-+--.|+..|.+++-+... .+|.+.++. +|-+..+
T Consensus 142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg---~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG---AEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC---HHHHHHHHHhcCCceee
Confidence 3566889999999999999999999999999999988877554 688888877 6766544
No 126
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=79.68 E-value=12 Score=33.41 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=41.2
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+...+++|.+.+|. .+|.-|.+++..|+.+|.+.++.+. .++.|++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 45678888776666 5799999999999999985344432 245677888889986443
No 127
>PLN02740 Alcohol dehydrogenase-like
Probab=79.39 E-value=22 Score=31.96 Aligned_cols=58 Identities=24% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.+...+++|.+.+|. ..|.-|.+++..|+.+|.+-++.+. .++.|++..+.+|++.++
T Consensus 191 ~~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 191 WNTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 345778888765555 5799999999999999985333332 345778888889986533
No 128
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=78.81 E-value=11 Score=33.69 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=40.8
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+.+.+.+|.+.+|. .+|.-|.+++..|+.+|...++++.. .+.|++.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 45778888876666 57999999999999999853443332 4577888888888533
No 129
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=78.70 E-value=10 Score=29.72 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=36.5
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEeCCC--CCH--HHH----HHHHHcCCEEEEeC
Q 024252 23 SGNTGIGLAFMAAAKGYRLIITMPAS--MSL--ERR----MVLLAFGAELVLTD 68 (270)
Q Consensus 23 sGN~g~alA~aa~~~G~~~~iv~p~~--~~~--~k~----~~~~~~Ga~v~~~~ 68 (270)
-+|.++|++..++++|+.++++.|+. .+. ..+ +..+..|.++.+++
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 38999999999999999999999997 454 223 23455699998885
No 130
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=78.50 E-value=21 Score=30.84 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=41.4
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.+.+.+|.+.+|...+|..|++++..|+..|.+.+++. .+..+.+.++.+|++.++
T Consensus 135 ~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 135 HGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILI 190 (334)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEE
Confidence 36778887766766789999999999999998865543 235666767778885443
No 131
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=78.19 E-value=15 Score=32.78 Aligned_cols=58 Identities=21% Similarity=0.203 Sum_probs=40.8
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.+...+++|.+.+|. .+|.-|.+++..|+.+|...++++.. .+.|++.++.+|++..+
T Consensus 180 ~~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 180 WNVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred HhhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 345677888765555 57999999999999999843344332 35678888889985443
No 132
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=77.70 E-value=29 Score=29.71 Aligned_cols=54 Identities=30% Similarity=0.387 Sum_probs=35.7
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHcCCE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYR-LIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~-~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+....+++|.+.+|. .+|-.|.+++..|+.+|.+ .+++ .. .+.+...++.+|++
T Consensus 122 ~~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~-~~--~~~~~~~~~~~g~~ 176 (312)
T cd08269 122 FRRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAI-DR--RPARLALARELGAT 176 (312)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE-CC--CHHHHHHHHHhCCc
Confidence 345667777766666 4677888888888888887 4443 22 24556666777763
No 133
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=77.66 E-value=31 Score=27.43 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=69.6
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccc-cC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQ 94 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 94 (270)
++|-.-..|+-|+++|-.++.+|++++.+-|...+.. .....+.+. . ++++ +.++- +... .-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~----~l~e-------ll~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V----SLDE-------LLAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S----SHHH-------HHHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e----ehhh-------hcchh-hhhhhhh
Confidence 3688889999999999999999999888877633222 334444422 1 2332 22332 3322 22
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHH--HHHHHhhhcCCCeEEEEEecC
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT--GAGKYLKEHNPEIKLYGVEPV 156 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~a--Gi~~~~~~~~~~~~vigV~~~ 156 (270)
|. ++.+ ...+..|.+++++ ++.+++-+|-|+++- .+..+++. ...+-.+.++.
T Consensus 100 pl-t~~T----~~li~~~~l~~mk--~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV~ 154 (178)
T PF02826_consen 100 PL-TPET----RGLINAEFLAKMK--PGAVLVNVARGELVDEDALLDALES--GKIAGAALDVF 154 (178)
T ss_dssp SS-STTT----TTSBSHHHHHTST--TTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS-
T ss_pred cc-cccc----ceeeeeeeeeccc--cceEEEeccchhhhhhhHHHHHHhh--ccCceEEEECC
Confidence 22 2222 4556778889984 799999999999864 55666654 33554555433
No 134
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=76.98 E-value=17 Score=32.50 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=41.1
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+.+++|.+.+|. .+|.-|.+++..|+.+|..-++.+ +.++.|++.++.+|++-++
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 45778888775555 569999999999999998433433 2356778888889985433
No 135
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=76.92 E-value=21 Score=30.86 Aligned_cols=55 Identities=27% Similarity=0.401 Sum_probs=38.1
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
..+.+.+|.+.+|.+ +|..|.+++..|+..|.++++ +....+..|...++.+|++
T Consensus 158 ~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 158 ERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 345677777766654 688999999999999988443 3223345677777778863
No 136
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=76.88 E-value=23 Score=28.37 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhh
Q 024252 27 GIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 105 (270)
Q Consensus 27 g~alA~aa~~~G~~~~iv~p~-~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G 105 (270)
|..+.++++.+|.+..--++. +--..-++.....|..|.++++.. ....+.++.+.++.|+.-.+. ++.+..+.
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~--~v~~~~~~~l~~~yP~l~i~g-~~g~f~~~-- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKP--DVLQQLKVKLIKEYPKLKIVG-AFGPLEPE-- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCH--HHHHHHHHHHHHHCCCCEEEE-ECCCCChH--
Confidence 467899999999763222221 111223444567788999998642 334445566666766543332 11111111
Q ss_pred hhchHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEE
Q 024252 106 YETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 153 (270)
Q Consensus 106 ~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV 153 (270)
--.+|.+++. ..||.++++.|+=--=.=+. -.+...+..-+++|
T Consensus 88 ---~~~~i~~~I~~s~~dil~VglG~PkQE~~~~-~~~~~~~~~v~~gv 132 (177)
T TIGR00696 88 ---ERKAALAKIARSGAGIVFVGLGCPKQEIWMR-NHRHLKPDAVMIGV 132 (177)
T ss_pred ---HHHHHHHHHHHcCCCEEEEEcCCcHhHHHHH-HhHHhCCCcEEEEe
Confidence 1123455543 25999999998844221112 22333344445565
No 137
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=76.71 E-value=24 Score=30.91 Aligned_cols=51 Identities=25% Similarity=0.213 Sum_probs=34.3
Q ss_pred CCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 10 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 10 ~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.+.+|.+.+|.+ +|-.|.+++..|+.+|.+.++++ ..++.|.+.++.+|++
T Consensus 158 ~~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 208 (340)
T TIGR00692 158 GPISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGAT 208 (340)
T ss_pred cCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCc
Confidence 355676666654 57788888888888887744444 2356677777777774
No 138
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=76.61 E-value=16 Score=32.05 Aligned_cols=55 Identities=25% Similarity=0.368 Sum_probs=39.4
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
....+.+|.+.+|. .+|..|.+++..|+.+|+..++++ ..+..|...++.+|+.+
T Consensus 161 ~~~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 161 KRAQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred HhcCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 34567777776666 579999999999999997434444 33457777778888864
No 139
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.38 E-value=13 Score=35.25 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=42.2
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
++. +|+.-..|.-|++.+..|+.+|-.++++ +..+.++++.+.+|++.+.++
T Consensus 164 pg~-kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 164 PPA-KVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CCC-EEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 444 5899999999999999999999854443 457789999999999966554
No 140
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=76.36 E-value=5.6 Score=31.08 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=32.3
Q ss_pred EEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcC
Q 024252 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFG 61 (270)
Q Consensus 18 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~G 61 (270)
|..-.+||+|.|+|...+..|.+++++.++. ...+.++..+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~ 42 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETR 42 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhC
Confidence 5677899999999999999999999997753 5555555433
No 141
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=76.07 E-value=21 Score=31.29 Aligned_cols=51 Identities=29% Similarity=0.304 Sum_probs=35.3
Q ss_pred CCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 12 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 12 ~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.+|.+.+|.+ +|..|.++...|+.+|.+.++++ ..+..|.+.++.+|++.+
T Consensus 162 ~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~ 212 (341)
T PRK05396 162 LVGEDVLITG-AGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRA 212 (341)
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEE
Confidence 4666666654 68888888888888888544444 345567777788887543
No 142
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=76.06 E-value=32 Score=31.36 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=29.4
Q ss_pred HHHHHHcCCCCCC-CcEEEeeCCcHHHHH--HHHHHHHcCCcEEEEe
Q 024252 2 IADAEEKGLIRPG-ESVLIEPTSGNTGIG--LAFMAAAKGYRLIITM 45 (270)
Q Consensus 2 i~~a~~~g~l~~g-~~~vv~aSsGN~g~a--lA~aa~~~G~~~~iv~ 45 (270)
|+....+|.+..| +..+|+..|+..|.| +|.+. ..|.+.+++.
T Consensus 28 i~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 28 IEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred HHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 4556677777444 556777777777777 56666 6788766664
No 143
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=75.49 E-value=38 Score=28.26 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=39.4
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
|...+|+..+|.-|.++|....+.|.+++++-. .......+.++..+.++..+.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLT 63 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEE
Confidence 456899999999999999999999998766532 233444556666777776554
No 144
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=75.37 E-value=17 Score=32.87 Aligned_cols=56 Identities=29% Similarity=0.363 Sum_probs=43.2
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
..+.+|.+.+|...+|.-|.+++..|+.+|.+.+++. .+..+...++.+|++.++-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 5677887766777779999999999999999865543 3456778888899876543
No 145
>PRK08703 short chain dehydrogenase; Provisional
Probab=75.28 E-value=38 Score=27.84 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=26.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
+.+.+|+..+|.-|.++|......|.+++++-+
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 356789999999999999999888887666543
No 146
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=75.17 E-value=14 Score=33.32 Aligned_cols=55 Identities=33% Similarity=0.377 Sum_probs=42.7
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
..+.+|.+.+|...+|..|.+++..|+.+|.+.+++. .++.|...++.+|++.++
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 5677887666666679999999999999999866553 356788888889986544
No 147
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=75.09 E-value=33 Score=30.59 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=39.7
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
..+.+++|.+.+|. .+|.-|.++...|+.+|.+.++.+.. +..|...++.+|++.+
T Consensus 180 ~~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~ 235 (365)
T cd08278 180 NVLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHV 235 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEE
Confidence 35667788776666 56899999999999999864444433 4567777788887533
No 148
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=74.88 E-value=39 Score=29.87 Aligned_cols=52 Identities=29% Similarity=0.414 Sum_probs=35.7
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+.+++|.+.+|. .+|..|.+++..|+.+|. +++++. .+..+...++.+|++-
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADA 225 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCe
Confidence 444577766666 468999999999999998 444442 2456667777788743
No 149
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=74.76 E-value=13 Score=27.37 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 024252 27 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 72 (270)
Q Consensus 27 g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~ 72 (270)
|+.+...|+.+|.+++++.+ ++.|++.++.+|++.+......+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~~~ 45 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSDDD 45 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTTSS
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccccc
Confidence 67788889999955555543 57899999999998887775443
No 150
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=74.73 E-value=24 Score=29.46 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=45.0
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 86 (270)
+.+.+|+-.+|.-|.++|......|.+++++-...........++..|.++..+..+ .+.++..+...+..++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999998776654321122334455667777654321 2333334444444443
No 151
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=74.70 E-value=34 Score=29.65 Aligned_cols=53 Identities=28% Similarity=0.269 Sum_probs=36.3
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.+.+.+|.+.+|...+|..|.+++..|+.+|++.+.+.+ +..+...++.+|++
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~ 187 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAW 187 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCC
Confidence 466777776555556788888888888888887555432 34555666677764
No 152
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=74.56 E-value=76 Score=29.77 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCcEEEEe-----------CCCCCHHHHHHHHHcCCEEEEeCCCC---Ch-HHHHHHHHHHHHhCCCc--c
Q 024252 29 GLAFMAAAKGYRLIITM-----------PASMSLERRMVLLAFGAELVLTDPAR---GM-KGAVQKAEEIRDKTPNS--Y 91 (270)
Q Consensus 29 alA~aa~~~G~~~~iv~-----------p~~~~~~k~~~~~~~Ga~v~~~~~~~---~~-~~~~~~a~~~~~~~~~~--~ 91 (270)
-+..+|+.+|+++++.. |.-+....+......|++.+..+.+. .| .++.+...+..++-... +
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 35678899999988875 22234455666777899999886532 22 24444444433322111 1
Q ss_pred ---ccCCCC-CC--CchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCC
Q 024252 92 ---VLQQFE-NP--ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 158 (270)
Q Consensus 92 ---~~~~~~-~~--~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~ 158 (270)
|-.+.. .. ..........+.++.+.+ +.++||+.+-+|.+.--++++ .|...|+++.+...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr~----rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSKY----RPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHhh----CCCCCEEEEcCCHH
Confidence 111100 00 011122334445566665 478999999999987666554 68899999975443
No 153
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=74.53 E-value=28 Score=26.67 Aligned_cols=54 Identities=31% Similarity=0.309 Sum_probs=38.6
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH----HHHHHHHcCCEEEEeCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE----RRMVLLAFGAELVLTDP 69 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~----k~~~~~~~Ga~v~~~~~ 69 (270)
+.+|+..++.-|+++|..-.+.|-..++++..+.+.. ....++..|.++..+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~ 59 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIEC 59 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccc
Confidence 3588889999999999999888777776666652222 23445667787777653
No 154
>PLN02702 L-idonate 5-dehydrogenase
Probab=74.44 E-value=22 Score=31.62 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=41.2
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
++...+.+|.+.+|. .+|.-|.++...++.+|.+.++.+.. +..|...++.+|++...
T Consensus 174 ~~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 174 CRRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 345667777765665 57888988889999999875555443 46777777888886543
No 155
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=74.41 E-value=24 Score=28.50 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=38.5
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 86 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 86 (270)
.+-|--.|||-+|.++|-++...|-.++++.....-+. -.+.+++.+.. .++-.+.+.+..++
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~ 82 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPS 82 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGG
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCc
Confidence 44444569999999999999999999999887632111 25677777774 44555555555444
No 156
>PRK08628 short chain dehydrogenase; Provisional
Probab=74.38 E-value=32 Score=28.64 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=39.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
|...+|+..+|--|.++|..-.+.|.+++++............++..|.++..+..
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQV 62 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEc
Confidence 34678888899999999999999999987775543222233455667777765543
No 157
>PRK10083 putative oxidoreductase; Provisional
Probab=74.23 E-value=27 Score=30.54 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=40.7
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~-~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.....+.+|.+.+|.. +|--|.+++..|+. +|.+.++.+.. .+.|.+.++.+|++-++
T Consensus 152 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 152 VTGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 34566778887655544 78888888888875 59876665443 56778888888985443
No 158
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=73.93 E-value=36 Score=29.30 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=33.3
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
.+...++++...+|...+|..|.+++..|+.+|.+++.+.+ ...+.+.++.+|+
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~ 188 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGA 188 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCC
Confidence 34556677766666666788888888888888876444322 2334445555665
No 159
>PLN02827 Alcohol dehydrogenase-like
Probab=73.75 E-value=24 Score=31.75 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=40.2
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+.+.+.+|.+.+|. .+|--|.+++..|+.+|.+.++.+.. ++.|++.++.+|++-+
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 45678888765555 56889999889999999865544432 4567788888888543
No 160
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.50 E-value=16 Score=33.61 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=41.1
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+.+-+|. +|+....|.-|+.+|..++.+|.+++++ +.++.|....+.+|+++.
T Consensus 197 ~~~l~Gk-tVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGK-VAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCC-EEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 4445665 6999999999999999999999975553 345667788888998654
No 161
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=73.42 E-value=18 Score=31.38 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=39.0
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
++.+.+.+|.+.+|. .+|..|.+++..++..|.+.+++.+. ..+++.++.+|++
T Consensus 160 ~~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~ 213 (329)
T cd08298 160 LKLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGAD 213 (329)
T ss_pred HHhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCc
Confidence 356778888775664 57889999999999999876555443 3566666778874
No 162
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=73.40 E-value=33 Score=27.52 Aligned_cols=49 Identities=16% Similarity=0.044 Sum_probs=33.0
Q ss_pred hhchHHHHHHhhCCCCCEEEEecCC-chhHHHHHHHhhhcCCCeEEEEEecCC
Q 024252 106 YETTGPEIWKGTGGKIDALVSGIGT-GGTVTGAGKYLKEHNPEIKLYGVEPVE 157 (270)
Q Consensus 106 ~~t~~~EI~~ql~~~~d~iv~~vG~-Gg~~aGi~~~~~~~~~~~~vigV~~~~ 157 (270)
|...+.|+-+.+. +.++.++.-|+ .|++-.++++.++.+ -+++||-|..
T Consensus 17 ~~~~A~~lG~~la-~~g~~lV~GGg~~GlM~a~a~ga~~~g--G~viGi~p~~ 66 (178)
T TIGR00730 17 YKELAAELGAYLA-GQGWGLVYGGGRVGLMGAIADAAMENG--GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHHH-HCCCEEEECCChHhHHHHHHHHHHhcC--CeEEEecchh
Confidence 4555666666663 34555555554 788888899988754 5789997654
No 163
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.12 E-value=34 Score=28.55 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=39.4
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
|++.+|+..++--|+++|....+.|.+++++-.. ........++..|.++..+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~-~~~~~~~~~~~~~~~~~~~~ 61 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA-EAPETQAQVEALGRKFHFIT 61 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc-hHHHHHHHHHHcCCeEEEEE
Confidence 4667999999999999999999999998776443 22233445666787776554
No 164
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=72.73 E-value=36 Score=28.40 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=45.1
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 86 (270)
|.+.+|+..+|.-|.++|..-...|.+++++..........+.+...|.++..+..+ .+.++..+...+..+.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999888766521122233445567666544432 2233333344444443
No 165
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=72.57 E-value=37 Score=29.51 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=29.7
Q ss_pred cEEEe-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 16 SVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 16 ~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
+.++. ..+|..|.++...|+.+|.+.+++. .+..|++.++.+|++-++.
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIV---RRKEQVDLLKKIGAEYVLN 194 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEE
Confidence 33443 5667777777777777777644432 2345666667777754443
No 166
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=72.23 E-value=33 Score=29.97 Aligned_cols=54 Identities=28% Similarity=0.281 Sum_probs=37.0
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
..+.+.+|.+.+|. .+|-.|.++...|+.+|...++.+ ..+..|...++.+|++
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGAT 214 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCc
Confidence 44667788776665 468888888888999997434444 2345667777777754
No 167
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=72.02 E-value=48 Score=27.95 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=38.5
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+..+.+++|.+.+|...+|..|.++...++.+|++.+.+.+. ..+...++.+|++
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 346778888766666678888888888888888875554332 3556666777764
No 168
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=71.72 E-value=10 Score=36.20 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=42.4
Q ss_pred CCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC------------------CCHHHHHHHHHcCCEEEEe
Q 024252 11 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS------------------MSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 11 l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~------------------~~~~k~~~~~~~Ga~v~~~ 67 (270)
..+|. .|+.-.+|-.|++.|.++++.|.+++++=... ....+++.++.+|++++.-
T Consensus 134 ~~~g~-~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 134 PDTGK-RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCCC-EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 44565 59999999999999999999999977764221 1234667788999987654
No 169
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=71.66 E-value=24 Score=30.82 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=43.5
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHH----HHHcCCEEEEeCC
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMV----LLAFGAELVLTDP 69 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--~k~~~----~~~~Ga~v~~~~~ 69 (270)
..|.|+ |.+-+.+--..|-+.|+-.+|+++|+++++..|+.-.+ .-+.. .+..|+++.++..
T Consensus 147 ~~g~l~-g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 147 HFGSLK-GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred hcCccc-CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 345443 45544455558999999999999999999999985533 22222 3445899998874
No 170
>PRK12743 oxidoreductase; Provisional
Probab=71.65 E-value=40 Score=28.10 Aligned_cols=72 Identities=13% Similarity=0.220 Sum_probs=45.8
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 86 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 86 (270)
.+.+|+..+|.-|.++|......|.+++++...+.+. .....++.+|.++..+..+ .+.+...+...++.++
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3568888999999999999999999887765543322 2234566778877665432 2333333444444443
No 171
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=71.61 E-value=41 Score=27.42 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=32.0
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HcCCEE
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AFGAEL 64 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~-~~Ga~v 64 (270)
++++.-..||.|..+|......|.+++++ . ....+++.+. .+|++.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~ 75 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATV 75 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEE
Confidence 46888888999999999999999987744 2 2344444443 336543
No 172
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=71.57 E-value=24 Score=30.67 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=38.5
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+....+.+|.+.+|. ..|..|++++..++..|.+++++.+ +..+++.++.+|++.++
T Consensus 155 l~~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 155 LRDAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVV 211 (330)
T ss_pred HHhhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEe
Confidence 444667777766666 5666899888899999987655533 34556666777765443
No 173
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=71.50 E-value=38 Score=29.46 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=39.3
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~-~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++....+++|.+.+|.. +|--|.+++..|+. .|.+.+.+. .+..+++.++.+|++.+
T Consensus 154 ~~~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~---~~~~~~~~~~~~g~~~v 211 (338)
T PRK09422 154 AIKVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVD---INDDKLALAKEVGADLT 211 (338)
T ss_pred HHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe---CChHHHHHHHHcCCcEE
Confidence 34556778887766666 68888888888887 488755443 33467777788887544
No 174
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=71.00 E-value=29 Score=23.34 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=37.6
Q ss_pred EEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-----HH----HHHHHHHcCCEEEE
Q 024252 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-----LE----RRMVLLAFGAELVL 66 (270)
Q Consensus 18 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-----~~----k~~~~~~~Ga~v~~ 66 (270)
++.-.+|..|.-+|.+.+.+|.+++++.+.... +. -.+.++..|-+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 677789999999999999999999999876432 11 23456777777764
No 175
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=70.78 E-value=30 Score=30.39 Aligned_cols=56 Identities=25% Similarity=0.308 Sum_probs=38.3
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+..+.+++|.+.+|. .+|--|.+++..|+.+|.+.++++.. +..+...++.+|++-
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 210 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATH 210 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcE
Confidence 467788888877775 46778888888999999873333322 345666666677753
No 176
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=70.74 E-value=43 Score=27.83 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=39.7
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~~ 69 (270)
|.+.+|+..+|.-|.+++......|.+++++.+.... ......++..|.++..+..
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEEC
Confidence 4567999999999999999999999987766544211 1223445667888766543
No 177
>PRK08589 short chain dehydrogenase; Validated
Probab=70.53 E-value=32 Score=29.12 Aligned_cols=55 Identities=16% Similarity=0.075 Sum_probs=37.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
|++.+|+-.+|--|+++|......|.+++++-...........++..|.++..+.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYH 60 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEE
Confidence 4567888899999999999999999988777554111122344556676665443
No 178
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=70.47 E-value=39 Score=29.62 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=36.9
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKG-YRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G-~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
....+.+|.+.+|. .+|..|.+++..|+.+| .++++ +. .+..|...++.+|++
T Consensus 160 ~~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~ 213 (345)
T cd08286 160 LNGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGAT 213 (345)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCC
Confidence 34567788776665 46999999999999999 45433 32 355667777778873
No 179
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=70.34 E-value=54 Score=28.35 Aligned_cols=53 Identities=30% Similarity=0.423 Sum_probs=36.5
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.+.+.+|.+.+|...+|-.|.+++..|+.+|.+++++.+ +..+...++.+|++
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCD 186 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCc
Confidence 356777777677777788888888888888887554432 33455566667763
No 180
>PRK07109 short chain dehydrogenase; Provisional
Probab=70.32 E-value=31 Score=30.49 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=39.5
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~~ 69 (270)
+...+|+-.+|--|+++|....+.|.+++++.+.... ....+.++..|.++..+..
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~ 64 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVA 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEe
Confidence 3457888899999999999999999987776553211 1223456677888876543
No 181
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=70.28 E-value=47 Score=28.98 Aligned_cols=52 Identities=29% Similarity=0.454 Sum_probs=31.8
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
....+.+|.+.+|. .+|..|.+++..|+..|+++++..+ +..+...++.+|+
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~ 204 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGA 204 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCC
Confidence 34566677665555 4567777777777777777554422 3455555566664
No 182
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=70.22 E-value=32 Score=30.84 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=39.4
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
...+.+++|.+.+|. .+|.-|.+++..++.+|..-++++. ..+.|++.++.+|++
T Consensus 183 ~~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 183 VNTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 455778888765555 6799999999999999984344443 245677777888884
No 183
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=70.16 E-value=34 Score=29.40 Aligned_cols=52 Identities=25% Similarity=0.269 Sum_probs=32.9
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
.+.+.+|.+.+|...+|.-|.+++..|+.+|.+.++..+. ..+.+.++.+|+
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~ 184 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGA 184 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCC
Confidence 3456667665565566778888888888888775544332 244555566665
No 184
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=69.91 E-value=58 Score=28.39 Aligned_cols=54 Identities=31% Similarity=0.438 Sum_probs=33.7
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
+....+.+|.+.+|. .+|-.|.+++..|+..|.+.++++. .++.+...++.+|.
T Consensus 158 l~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~ 211 (343)
T cd08235 158 QRKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGA 211 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCC
Confidence 344567777766666 4677888888888888887333332 23445555555665
No 185
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=69.91 E-value=27 Score=30.63 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=36.3
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
-.+.+|.+.+|.+ .|..|.+++..|+.+|.+.+++.+ +..+...++.+|++-++
T Consensus 165 ~~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~vi 218 (337)
T cd05283 165 NGVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSR---SPSKKEDALKLGADEFI 218 (337)
T ss_pred cCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEe
Confidence 3467777666654 688899888899888886555433 23556666777865443
No 186
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.87 E-value=49 Score=28.22 Aligned_cols=55 Identities=27% Similarity=0.383 Sum_probs=37.9
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.+.+++|.+.+|...+|..|.++...|+..|.+++.+.+. ..+.+.++.+|++-+
T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 191 (320)
T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEV 191 (320)
T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEE
Confidence 3456777766666667999999999999999885544332 355666677777443
No 187
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=69.81 E-value=48 Score=28.23 Aligned_cols=54 Identities=31% Similarity=0.394 Sum_probs=35.0
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+.+.+.+|.+.+|...+|..|.+++..++..|.+.+++.+ +..+.+.++.+|++
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG---SDEKCAACEALGAD 186 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCc
Confidence 4567777776666666788888888888888877554433 23344445566653
No 188
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=69.79 E-value=32 Score=30.03 Aligned_cols=55 Identities=31% Similarity=0.464 Sum_probs=39.0
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.....+++|.+.+|.+ +|-.|.++...++.+|.+.++.+.. +..|...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 4566778887666664 5888888888888888875555433 45777777778874
No 189
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=69.48 E-value=28 Score=32.91 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=40.8
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+++.-..|..|++.+..++.+|..++++ +....++++.+.+|++.+.++.
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 5778889999999999999999875555 3355688899999999877763
No 190
>PRK08226 short chain dehydrogenase; Provisional
Probab=69.32 E-value=39 Score=28.18 Aligned_cols=55 Identities=22% Similarity=0.151 Sum_probs=36.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+-.+|.-|.++|......|.+++++-+..........++..|.++..+.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 3467889999999999999999999987666443211122333444566665544
No 191
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=69.30 E-value=29 Score=29.99 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=37.3
Q ss_pred HcCCCCCCC-cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGE-SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~-~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.+..+.+|. +.+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++
T Consensus 138 ~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~ 192 (323)
T TIGR02823 138 ERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGAS 192 (323)
T ss_pred hhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCc
Confidence 444467776 66666667999999999999999876554332 3455666777874
No 192
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=69.21 E-value=46 Score=28.76 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=35.1
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-cCCE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAE 63 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~-~Ga~ 63 (270)
.+.+.+|.+.+|...+|-.|.+++..|+.+|.+.+++.+ +..+...++. +|++
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 356677766556666788888888888888886544432 3345555555 7763
No 193
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=69.17 E-value=51 Score=28.86 Aligned_cols=52 Identities=25% Similarity=0.411 Sum_probs=35.7
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
+...+.++.+.+|.. +|..|.++...|+.+|++.+++.+ +..+.+.++.+|+
T Consensus 159 ~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~ 210 (345)
T cd08260 159 HQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGA 210 (345)
T ss_pred HccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCC
Confidence 345677777666666 788888888888888887655533 3455666666776
No 194
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=69.06 E-value=49 Score=29.44 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=39.9
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
....+.+|.+.+|. .+|..|.+++..|+.+|.+.++.+.. +..|...++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 45677888776665 67999999999999999875554432 55677777888874
No 195
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=68.90 E-value=53 Score=27.05 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=38.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
|.+.+|+-.+|.-|.++|......|..++++.+. ........++.++.++..+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 58 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS-EPSETQQQVEALGRRFLSLT 58 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc-hHHHHHHHHHhcCCceEEEE
Confidence 4567888888999999999999999987776543 22333455666777665554
No 196
>PRK05993 short chain dehydrogenase; Provisional
Probab=68.85 E-value=71 Score=27.04 Aligned_cols=53 Identities=28% Similarity=0.214 Sum_probs=40.1
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+...+|+..+|.-|.++|-.....|.+++++.+. ..++..++..|.+++.++-
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 3457888999999999999999999987776543 4455666666777776665
No 197
>PLN02527 aspartate carbamoyltransferase
Probab=68.75 E-value=37 Score=29.80 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=41.9
Q ss_pred HcCCCCCCCcEEEeeCC---cHHHHHHHHHHHHc-CCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPTS---GNTGIGLAFMAAAK-GYRLIITMPASM--SLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSs---GN~g~alA~aa~~~-G~~~~iv~p~~~--~~~k~~~~~~~Ga~v~~~~ 68 (270)
..|.++ |.+ |+-... +|.+++++.+++++ |+.++++.|+.- +....+.++..|.++..++
T Consensus 145 ~~g~l~-g~k-va~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 145 EIGRLD-GIK-VGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred HhCCcC-CCE-EEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 346654 444 555544 36899999998887 999999999863 4445555666788777665
No 198
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=68.74 E-value=53 Score=27.10 Aligned_cols=52 Identities=33% Similarity=0.539 Sum_probs=33.4
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
...+.+|.+.+|...++ .|++++..++..|.+.+++.+. +.+.+.++.+|++
T Consensus 129 ~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 180 (271)
T cd05188 129 AGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGAD 180 (271)
T ss_pred ccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCc
Confidence 34446777666665555 8888888888888665555332 3455556666654
No 199
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=68.58 E-value=20 Score=32.20 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=41.1
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.+.++..++|..+..+++.+...+-.-.|++|..+-......++..|+++++++-
T Consensus 46 ~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 46 SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (375)
T ss_pred CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 4568888899888777665433333346788887777778888999999999975
No 200
>PRK06114 short chain dehydrogenase; Provisional
Probab=68.53 E-value=64 Score=26.83 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=38.5
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~ 68 (270)
|...+|+..+|--|.++|......|.++++..+.... ....+.++..|.++..+.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 4567899999999999999999999988776554321 222345566677666554
No 201
>PRK06182 short chain dehydrogenase; Validated
Probab=68.40 E-value=71 Score=26.87 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=45.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 86 (270)
+...+|+.++|--|.++|......|.+++++... ..+++.+...+.+++.++-. +.+...+...+..++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 3457888999999999999999999987776543 34555555567777766643 333333333444333
No 202
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=68.38 E-value=62 Score=28.68 Aligned_cols=54 Identities=26% Similarity=0.376 Sum_probs=36.5
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
....+.+|.+.+|. ..|..|.++...|+..|.+.++++.. +..|...++.+|++
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 45667788776666 56888988888999888863333322 34556666777763
No 203
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=68.08 E-value=30 Score=29.17 Aligned_cols=52 Identities=29% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHcC
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYR-LIITMPASMSLERRMVLLAFG 61 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~-~~iv~p~~~~~~k~~~~~~~G 61 (270)
+..+.+++|.+.+|. ..|..|.++...|+.+|.+ ++++ ..++.+...++.+|
T Consensus 90 ~~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 90 VRDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 446778888776665 5788999999999999988 4443 23456666777777
No 204
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=68.03 E-value=34 Score=29.51 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=33.2
Q ss_pred CCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 12 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 12 ~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.+|.+.+|...+|..|.+++..|+.+|.++++..+ +..+.+.++.+|++
T Consensus 145 ~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 193 (326)
T cd08289 145 PEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAK 193 (326)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCC
Confidence 33555556556688999999899999987554433 34566667778874
No 205
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=67.75 E-value=36 Score=29.31 Aligned_cols=54 Identities=30% Similarity=0.473 Sum_probs=37.4
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
....+.++.+.+|...+|..|.+++..++..|.+++++.+ ++.+...++.+|.+
T Consensus 156 ~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~ 209 (332)
T cd08259 156 KRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGAD 209 (332)
T ss_pred HHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCc
Confidence 3366777777777777788898888888888888666543 23445555666653
No 206
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=67.52 E-value=27 Score=30.24 Aligned_cols=39 Identities=33% Similarity=0.415 Sum_probs=30.2
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIIT 44 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv 44 (270)
+....+++|.+.+|...+|..|.+++..|+..|.+++++
T Consensus 155 l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 155 LKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 344677888776666667999999999999999876554
No 207
>PRK06139 short chain dehydrogenase; Provisional
Probab=67.46 E-value=34 Score=30.27 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=38.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
++..||+..||--|+++|......|.+++++...... ......++.+|.++..+.
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 3567888899999999999999999987766543211 112345667888876554
No 208
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=67.41 E-value=32 Score=30.74 Aligned_cols=56 Identities=23% Similarity=0.279 Sum_probs=39.0
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+....+.+|.+.+| ...|.-|.+++..|+.+|...++++. .+..|.+.++.+|+..
T Consensus 169 ~~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 169 LELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 34556777776556 56688999999999999975344433 3567778888888743
No 209
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=67.37 E-value=56 Score=27.61 Aligned_cols=53 Identities=32% Similarity=0.427 Sum_probs=34.4
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.+.+.+|.+.+|...+|..|.+++..++.+|.+.+++. .++.+.+.++.+|++
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~ 183 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGAD 183 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCC
Confidence 46677776655555578888888888888887654442 234555555666653
No 210
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.32 E-value=69 Score=27.75 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=39.7
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~~ 69 (270)
|...||+..+|.-|+++|......|.++++.-..... ......++..|.+++.+..
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeC
Confidence 4567899999999999999999999987665432221 2234556777888876654
No 211
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.06 E-value=44 Score=27.34 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.1
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
+.+.+|+..+|.-|.+++-.....|.+++++.+.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567899999999999999999999988877654
No 212
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=66.93 E-value=32 Score=29.35 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=36.5
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.+.+.+|.+.+|...+|..|.+++..|+..|.+.+.+.+. .+.+.++.+|++
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 3456777766666667889999999999999876555432 556666777763
No 213
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=66.78 E-value=24 Score=30.85 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=42.7
Q ss_pred CCCCCcEEEee-CCcHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeCC
Q 024252 11 IRPGESVLIEP-TSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 11 l~~g~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~-~k~~~~~~~Ga~v~~~~~ 69 (270)
|.+|- .||-- ...--|+++--.|+.+|++.+=+++....- .-.++++.+||+-++.+.
T Consensus 158 L~~GD-~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 158 LNKGD-SVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEE 217 (354)
T ss_pred cCCCC-eeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHH
Confidence 55665 45543 335567888889999999999888775544 445678999999988874
No 214
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=66.55 E-value=38 Score=26.90 Aligned_cols=53 Identities=26% Similarity=0.196 Sum_probs=38.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-----MSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-----~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
-+|+-..|..|..+|-.-...+-.-++++.+. .....++.++..|++|....-
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~ 60 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQC 60 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE-
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeecc
Confidence 47788889999999998888876666666554 223567888999999998764
No 215
>PRK12937 short chain dehydrogenase; Provisional
Probab=66.45 E-value=63 Score=26.46 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=39.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~~ 69 (270)
+.+.+|+..+|.-|+++|....+.|.+++++.....+ ....+.++.++.++..+..
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3457888899999999999999999987766544322 1223445667888776653
No 216
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=66.43 E-value=79 Score=26.62 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHc---CCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchh
Q 024252 27 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF---GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPK 103 (270)
Q Consensus 27 g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 103 (270)
|.++|-+.+++|+++.++-++..+...+..+..+ |..|.+.-+... +-.....+.+..-....+..|.+-..
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~-- 160 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPP-- 160 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCC--
Confidence 3455555566666555443434444555555555 456655544321 11122333333212234444433221
Q ss_pred hhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCC----CeEEEEEe
Q 024252 104 IHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP----EIKLYGVE 154 (270)
Q Consensus 104 ~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~----~~~vigV~ 154 (270)
.+. ...++........|+|+.. |+.+.-.+...+...++ +.+++.+-
T Consensus 161 -~~~-~~~~~~~~~~~~~d~v~ft--S~~~v~~~~~~~~~~~~~~~~~~~v~~IG 211 (248)
T COG1587 161 -PLD-EATLIELLKLGEVDAVVFT--SSSAVRALLALAPESGIEFLERKRVASIG 211 (248)
T ss_pred -Ccc-HHHHHHHHHhCCCCEEEEe--CHHHHHHHHHHccccchhHhhCceEEEec
Confidence 112 1111111112468999888 55567777777766554 25555553
No 217
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=66.22 E-value=24 Score=27.83 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=41.1
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+...+||-|...+..+..+|.+.+++ +....+++..+..++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEcc
Confidence 5888899999999999999999986666 3467788888999998888753
No 218
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.15 E-value=46 Score=29.12 Aligned_cols=50 Identities=30% Similarity=0.315 Sum_probs=32.5
Q ss_pred CCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 11 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 11 l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
..+|.+.+|.+ +|..|.+++..|+.+|.+.++++ ..+..|....+.+|++
T Consensus 161 ~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 210 (341)
T cd05281 161 DVSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGAD 210 (341)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcc
Confidence 35666656654 57888888888888887544444 2355666666777764
No 219
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=66.11 E-value=39 Score=31.20 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=39.9
Q ss_pred CCcEEEeeCC---cHHHHHHHHHHHHc-CCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTS---GNTGIGLAFMAAAK-GYRLIITMPASM--SLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSs---GN~g~alA~aa~~~-G~~~~iv~p~~~--~~~k~~~~~~~Ga~v~~~~ 68 (270)
|.+ |+-... +|.+.|++.+++.+ |++++++.|+.- +...++.++..|..|..++
T Consensus 241 G~k-Ia~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 241 GAH-IALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred CCE-EEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 544 555555 69999999997665 999999999864 3444566677788888766
No 220
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=65.90 E-value=70 Score=27.70 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=36.4
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
....+.+|.+.+|. ..|..|.+++..|+.+|++.++++.. ++.+...++.+|++
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 45667777765555 56888888888888888874333332 35566666777765
No 221
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=65.80 E-value=70 Score=27.15 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=34.0
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+.+.+|.+.+|...+|..|.+++..++..|.+.++..+. ..+.+.++.+|++
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 191 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGAD 191 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCC
Confidence 667777776666667888888888888888775544332 3445555556653
No 222
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=65.74 E-value=54 Score=24.47 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=50.2
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHH-HHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhc
Q 024252 30 LAFMAAAKGYRLIITMPASMSLERRMV-LLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 108 (270)
Q Consensus 30 lA~aa~~~G~~~~iv~p~~~~~~k~~~-~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t 108 (270)
|+...+..+.+..|+..........+. ....+.+++.-.+ .++.+++..+.+...+......+...+.|.....
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~---- 76 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTPD---- 76 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HH----
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHH----
Confidence 345566778888888766544444433 5566777766655 4789999888777644324455555666665322
Q ss_pred hHHHHHHhhCCCCCEEEEecCCch
Q 024252 109 TGPEIWKGTGGKIDALVSGIGTGG 132 (270)
Q Consensus 109 ~~~EI~~ql~~~~d~iv~~vG~Gg 132 (270)
.-.+.++.| ...|.|+.|+-=||
T Consensus 77 ~l~~A~~~L-~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 77 DLEQAFEAL-QRHDVVLGPAEDGG 99 (122)
T ss_dssp HHHHHHHHT-TT-SEEEEEBTTSS
T ss_pred HHHHHHHHh-ccCCEEEeeccCCC
Confidence 222334445 34699999998776
No 223
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=65.47 E-value=41 Score=28.97 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=37.9
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+|.+.+|...+|..|.+++..|+.+|.+++++.. .+.|.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 5556566666799999999999999998655543 45678888889985433
No 224
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=65.44 E-value=42 Score=30.03 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=35.9
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..+++..+..++..+....-+-.|+++.-.-..-...++.+|++++.++.
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 47777777888776655543332224566665556667778999999999874
No 225
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=65.38 E-value=51 Score=27.35 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=37.1
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
|++.+|+..+|.-|.++|......|.+++++-+.... ......++..|.++..+.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 4567889999999999999999999986655433111 112334555677776554
No 226
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=65.17 E-value=51 Score=27.63 Aligned_cols=55 Identities=18% Similarity=0.073 Sum_probs=37.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|.++|......|.+++++-..... ......++..|.+++.+.
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYV 65 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 4567999999999999999999999987666332111 112234556677776554
No 227
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=64.98 E-value=69 Score=26.11 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=38.2
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--~k~~~~~~~Ga~v~~~~~ 69 (270)
.+.+|+-.+|.-|.+++....+.|.+++++.....+. .....++..+.++..+..
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc
Confidence 4578889999999999999988899876666543221 223334556777776653
No 228
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.90 E-value=96 Score=27.16 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=51.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEe-CCCCCHHHHHHHHHcC-CEEEEeCCCCChHHHHHHHHHHHHhCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITM-PASMSLERRMVLLAFG-AELVLTDPARGMKGAVQKAEEIRDKTP 88 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~-p~~~~~~k~~~~~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~ 88 (270)
|...+||.+++-.|+++|.-.++.|-+.++.- ......+..+.++..| +.-..++-+ ++++..+.+.+..++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 55678999999999999999999998555442 2334456677777777 333455543 56777777877777763
No 229
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.58 E-value=75 Score=26.13 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=39.2
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--~k~~~~~~~Ga~v~~~~~ 69 (270)
|.+.+|+..+|.-|+.+|..-...|.+++++..++.+. .....++..|.++..+..
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKA 61 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 35678899999999999999999998877654433222 223345667887776553
No 230
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=64.47 E-value=42 Score=29.43 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=37.0
Q ss_pred CCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 11 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 11 l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
..+|.+.+|...+|-.|.+++..|+.+|.+.+... . +.|.+.++.+|++-
T Consensus 152 ~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~ 201 (339)
T cd08249 152 ASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADA 201 (339)
T ss_pred CCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCE
Confidence 46777766666679999999999999999766543 2 25667778888743
No 231
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=64.37 E-value=75 Score=26.29 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=14.2
Q ss_pred EEeeCCcHHHHHHHHHHHHcCCcEE
Q 024252 18 LIEPTSGNTGIGLAFMAAAKGYRLI 42 (270)
Q Consensus 18 vv~aSsGN~g~alA~aa~~~G~~~~ 42 (270)
|+..-+--++..+|-+.-.-|++++
T Consensus 18 Vlr~~~~e~a~~~a~Ali~gGi~~I 42 (211)
T COG0800 18 VIRGDDVEEALPLAKALIEGGIPAI 42 (211)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeE
Confidence 4555555555555555555565555
No 232
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=64.30 E-value=76 Score=27.40 Aligned_cols=55 Identities=29% Similarity=0.433 Sum_probs=38.1
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
..+.+.++.+.+|. .+|..|.+++..|+..|.++++.. .+..+.+.++.+|++-+
T Consensus 159 ~~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~---~s~~~~~~~~~~g~~~~ 213 (338)
T cd08254 159 RAGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVD---IKEEKLELAKELGADEV 213 (338)
T ss_pred hccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhCCCEE
Confidence 34567788776665 468889999999999998854442 24556667777777443
No 233
>PRK12828 short chain dehydrogenase; Provisional
Probab=64.24 E-value=70 Score=25.94 Aligned_cols=56 Identities=21% Similarity=0.101 Sum_probs=39.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~~ 69 (270)
|.+.+|+.++|--|.+++....+.|.+++++.+...+ ......+...+.+++..+-
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 4567899999999999999988889987666653222 1223445566777777664
No 234
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=64.22 E-value=58 Score=27.46 Aligned_cols=55 Identities=20% Similarity=0.142 Sum_probs=37.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+-.+|.-|+++|......|.+++++-+.... ......++.+|.++..+.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVK 65 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4567888889999999999999999987776543211 122334555677776554
No 235
>PRK06172 short chain dehydrogenase; Provisional
Probab=63.20 E-value=63 Score=26.73 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=38.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|.++|....+.|.+++++...... ......++..|.++..+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVA 62 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 4567888899999999999999999987776543221 122344566777776554
No 236
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=63.14 E-value=85 Score=26.58 Aligned_cols=52 Identities=31% Similarity=0.505 Sum_probs=29.6
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
...+.+|...+|...+|..|.+++..++.+|.+.+++... ..+.+.++.+|+
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~ 185 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGA 185 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCC
Confidence 4556666655555555777777777777777664433222 234444445554
No 237
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=63.01 E-value=82 Score=25.87 Aligned_cols=54 Identities=9% Similarity=0.204 Sum_probs=37.5
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~ 68 (270)
...+|+-.+|.-|+++|-.....|.+++++...... ...+..++..|.++....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE
Confidence 456899999999999999999999886665443221 122444556788776543
No 238
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=62.97 E-value=59 Score=28.29 Aligned_cols=51 Identities=22% Similarity=0.198 Sum_probs=34.9
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKG-YRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G-~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+.+.+|.+.+|.. +|..|.+++..|+..| .+++.+.+ ++.+.+.++.+|++
T Consensus 163 ~~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~ 214 (340)
T cd05284 163 PYLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGAD 214 (340)
T ss_pred ccCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCc
Confidence 3566776656655 6669999999999988 66655432 34566677778864
No 239
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=62.92 E-value=50 Score=28.84 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=33.5
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+|.+.+|...+|..|.+++..|+.+|.++++.... .+.+.++.+|.+
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~ 208 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGAD 208 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCc
Confidence 37766666667899999999999999876554432 356666777764
No 240
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=62.65 E-value=53 Score=29.31 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=41.4
Q ss_pred CCCCCCcEEEeeCC---cHHHHHHHHH-HHHcCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 024252 10 LIRPGESVLIEPTS---GNTGIGLAFM-AAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 10 ~l~~g~~~vv~aSs---GN~g~alA~a-a~~~G~~~~iv~p~~~--~~~k~~~~~~~Ga~v~~~~ 68 (270)
.++ |.+ |+-... +|.+.+++.. ++.+|++++++.|+.- +...++.++..|.++..++
T Consensus 156 ~l~-g~k-ia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 156 GID-GMH-IAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CcC-CCE-EEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 444 544 555555 6889999976 5677999999999864 4555666777898888776
No 241
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.31 E-value=95 Score=28.52 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=40.0
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+|.+.+|+-.+|.-|.++|....+.|.+++++-............+..+.+.+.++-
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv 265 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDI 265 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeC
Confidence 356678888899999999999999999877764432222223334456777777765
No 242
>PRK08862 short chain dehydrogenase; Provisional
Probab=62.21 E-value=66 Score=26.51 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=35.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEe
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLT 67 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~-~k~~~~~~~Ga~v~~~ 67 (270)
|...+|+..++.-|+++|....+.|.+++++-+..... ...+.++..|.+++.+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 45678888888899999999999999866653321111 1233455567666544
No 243
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=62.10 E-value=1e+02 Score=26.51 Aligned_cols=52 Identities=33% Similarity=0.457 Sum_probs=32.9
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
..+++|...+|. .+|..|.+++..|+..|.+.++..+ +..+++.++.+|++.
T Consensus 156 ~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~ 207 (336)
T cd08276 156 GPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADH 207 (336)
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 566777654444 5777888888888888877544432 335555555566543
No 244
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=61.95 E-value=78 Score=27.73 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 10 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 10 ~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.+.+|.. |+...+|..|.+++..|+.+|.+.++++. .+..|...++.+|++
T Consensus 172 ~~~~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 222 (350)
T cd08240 172 PLVADEP-VVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGAD 222 (350)
T ss_pred cCCCCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCc
Confidence 3445554 44446788888888888888885444443 245666777777764
No 245
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=61.67 E-value=35 Score=30.41 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=33.6
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+.+++|.+.+| ..+|.-|.++...|+.+|.+.+++... +..+....+.+|++-+
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~v 232 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSF 232 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEE
Confidence 44567765444 666888888888888888875444332 2233445567787543
No 246
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=61.64 E-value=51 Score=28.93 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=41.9
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHH-HHHcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMV-LLAFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~-~~~~Ga~v~~~~ 68 (270)
..|.++ |.+..+..-.+|..++++..++++|++++++.|+.-. ...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 456664 4443333335899999999999999999999998532 222332 466788887665
No 247
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=61.59 E-value=80 Score=28.36 Aligned_cols=56 Identities=27% Similarity=0.308 Sum_probs=38.3
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHc-CCEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF-GAEL 64 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~-Ga~v 64 (270)
++.+.+.+|.+.+|. .+|-.|.+++..|+..|...++++.. ++.+++.++.+ |+++
T Consensus 177 l~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~v 233 (386)
T cd08283 177 AELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAET 233 (386)
T ss_pred HhhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 345677788765555 56888999999999999864444433 35677777777 5543
No 248
>PLN02342 ornithine carbamoyltransferase
Probab=61.59 E-value=52 Score=29.54 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=41.3
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHcCC-EEEEeC
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGA-ELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~~~~~Ga-~v~~~~ 68 (270)
..|.++ |.+..+..-..|..++++.+++++|+.++++.|+.- +...++.++.+|. ++...+
T Consensus 188 ~~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 456664 454333333368999999999999999999999853 3344555666674 665554
No 249
>PRK07478 short chain dehydrogenase; Provisional
Probab=61.36 E-value=69 Score=26.54 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=43.9
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~-~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 86 (270)
+.+.+|+..+|.-|.++|..-.+.|.+++++.....+. .....++..|.++..+..+ .+.++..+...+..++
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 45678888999999999999999999876664431111 1123455667777655432 2233333344444443
No 250
>PRK08643 acetoin reductase; Validated
Probab=61.20 E-value=82 Score=26.10 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=36.5
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHH-HHHHHHcCCEEEEeC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER-RMVLLAFGAELVLTD 68 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k-~~~~~~~Ga~v~~~~ 68 (270)
+..+|+..+|.-|.++|......|.+++++........+ ...++..|.++..+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVK 57 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 456889999999999999999999887666443222111 233455677776554
No 251
>PRK12939 short chain dehydrogenase; Provisional
Probab=61.13 E-value=70 Score=26.23 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=36.4
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|.++|-...+.|.+++++...... ......++..+.++..+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 4567888899999999999999999886665332111 112234455676666554
No 252
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=61.09 E-value=42 Score=31.09 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=41.7
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHcCCEEEEeC
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-----MSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-----~~~~k~~~~~~~Ga~v~~~~ 68 (270)
.|. .|+.-.+||.|.-+|..++++|.+++++.+.. .....++.++..|.+++.-.
T Consensus 271 ~gk-~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 271 AGK-SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CCC-eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 444 58999999999999999999999998887652 12334456777888877543
No 253
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=61.07 E-value=82 Score=27.06 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=16.6
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 36 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 36 ~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
..|.+|+.++... +....+.++..|-+|+..+.
T Consensus 29 ~~g~~v~f~~~~~-~~~~~~~i~~~g~~v~~~~~ 61 (279)
T TIGR03590 29 AQGAEVAFACKPL-PGDLIDLLLSAGFPVYELPD 61 (279)
T ss_pred HCCCEEEEEeCCC-CHHHHHHHHHcCCeEEEecC
Confidence 3566655555542 23334455555655555543
No 254
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.83 E-value=1.1e+02 Score=26.29 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=27.4
Q ss_pred HHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcC----CCeEEEEEe
Q 024252 110 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN----PEIKLYGVE 154 (270)
Q Consensus 110 ~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~----~~~~vigV~ 154 (270)
..+++++- +++|.||+. +.....|+..++++.+ .++.|+|.+
T Consensus 193 ~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D 238 (305)
T cd06324 193 AENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVN 238 (305)
T ss_pred HHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecC
Confidence 33444442 458888764 5667778999998876 246677665
No 255
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=60.72 E-value=87 Score=27.65 Aligned_cols=83 Identities=16% Similarity=0.071 Sum_probs=45.0
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH-HhCCCccccCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIR-DKTPNSYVLQQ 95 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 95 (270)
.|+..++++.+..++..+- .+-.-.|+++.-....-....+.+|++++.++-..++.-..+...+.. +......++..
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 4676777777776655432 222234555654555666778899999999875322211122222222 22335566654
Q ss_pred CCCCC
Q 024252 96 FENPA 100 (270)
Q Consensus 96 ~~~~~ 100 (270)
.+||.
T Consensus 162 p~NPt 166 (356)
T PRK04870 162 PNNPT 166 (356)
T ss_pred CCCCC
Confidence 45554
No 256
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=60.59 E-value=77 Score=28.23 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=40.7
Q ss_pred cCCCCCCCcEEEeeCCc--HHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHHcCCEEEEeC
Q 024252 8 KGLIRPGESVLIEPTSG--NTGIGLAFMAAAKGYRLIITMPASM--SLERRMV----LLAFGAELVLTD 68 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsG--N~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~----~~~~Ga~v~~~~ 68 (270)
.|.++ |.+ |+-...+ |.+++++.+++++|++++++.|+.- +...++. .+..|.++..++
T Consensus 150 ~g~l~-g~~-va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 150 FGPLK-GLK-LAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred hCCCC-CCE-EEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 46664 443 5544554 8999999999999999999999854 2223322 345788877766
No 257
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=60.57 E-value=44 Score=30.66 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTP 88 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 88 (270)
+.+-+|. +|+....|+-|+.+|..++.+|.+++++ .. ++.+....+..|+++. + .++ ..+..
T Consensus 190 ~~~l~Gk-~VvViG~G~IG~~vA~~ak~~Ga~ViV~-d~--dp~r~~~A~~~G~~v~--~----lee-------al~~a- 251 (406)
T TIGR00936 190 NLLIAGK-TVVVAGYGWCGKGIAMRARGMGARVIVT-EV--DPIRALEAAMDGFRVM--T----MEE-------AAKIG- 251 (406)
T ss_pred CCCCCcC-EEEEECCCHHHHHHHHHHhhCcCEEEEE-eC--ChhhHHHHHhcCCEeC--C----HHH-------HHhcC-
Confidence 3344565 6999999999999999999999986554 22 2344555566787553 1 121 11221
Q ss_pred CccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchh
Q 024252 89 NSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGT 133 (270)
Q Consensus 89 ~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~ 133 (270)
+ +++.-.. ....+..+.+++++ +..+++-+|.+..
T Consensus 252 D-VVItaTG-------~~~vI~~~~~~~mK--~GailiN~G~~~~ 286 (406)
T TIGR00936 252 D-IFITATG-------NKDVIRGEHFENMK--DGAIVANIGHFDV 286 (406)
T ss_pred C-EEEECCC-------CHHHHHHHHHhcCC--CCcEEEEECCCCc
Confidence 2 2222111 12234445666663 5778888888765
No 258
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=60.56 E-value=71 Score=26.92 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=61.1
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe-------CCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT-------DPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 22 SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
||-|.|.+| ++.|-++.++ .-+.--.+++.+ +|.|=..+ .+.-.+.+ |.=.-++.++.|+++
T Consensus 19 ttAnig~aL----A~~GkKv~li-D~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~Q----ALIkDKr~~nL~lLP 87 (272)
T COG2894 19 TTANIGTAL----AQLGKKVVLI-DFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLNQ----ALIKDKRLENLFLLP 87 (272)
T ss_pred hhHHHHHHH----HHcCCeEEEE-ecCcCchhhhhh--hcccceeeeeehhhhcCccchhh----HhhccccCCceEecc
Confidence 334444444 4677775554 555555556654 78765443 22111222 111112222444433
Q ss_pred CC--CCCC-chhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhc--CCCeEEEEEecCCCcc
Q 024252 95 QF--ENPA-NPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEH--NPEIKLYGVEPVESAV 160 (270)
Q Consensus 95 ~~--~~~~-~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~--~~~~~vigV~~~~~~~ 160 (270)
.. .+-. ...++...+..|+.+ ..+|||+|-+ .|||=.||+.. +.+-.++.+.|+-++.
T Consensus 88 AsQtrdKdalt~E~v~~vv~eL~~---~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvSsV 150 (272)
T COG2894 88 ASQTRDKDALTPEGVKKVVNELKA---MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVSSV 150 (272)
T ss_pred cccccCcccCCHHHHHHHHHHHHh---cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCcccc
Confidence 22 1111 123455544444432 4699999874 67888888765 3456677778877754
No 259
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=60.35 E-value=59 Score=28.98 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHcCCcEEEEeC-CCC--CHHHHH----HHHHcCCEEEEeC
Q 024252 24 GNTGIGLAFMAAAKGYRLIITMP-ASM--SLERRM----VLLAFGAELVLTD 68 (270)
Q Consensus 24 GN~g~alA~aa~~~G~~~~iv~p-~~~--~~~k~~----~~~~~Ga~v~~~~ 68 (270)
+|..++++.+++++|++++++.| +.- ++.-+. .++..|.++....
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 48999999999999999999999 643 332232 2356788887765
No 260
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=60.23 E-value=44 Score=27.60 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 024252 22 TSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 86 (270)
Q Consensus 22 SsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 86 (270)
+++.-|+++|....+.|.++++.-..... ....+..+.+|.+++.++-. +.+...+...+..++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhh
Confidence 56788999999999999988777554321 11233456789998777753 333333333444444
No 261
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=60.18 E-value=63 Score=28.10 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=38.2
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHcCCEEEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVL 66 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~-~~~k~~~~~~~Ga~v~~ 66 (270)
+.+++|.+.+|...+|.-|.+++..|+.+|.++++...... -..+.+.++.+|++-++
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEE
Confidence 55677776555555689999999999999988666554321 11455666677775443
No 262
>PRK06128 oxidoreductase; Provisional
Probab=60.13 E-value=1e+02 Score=26.47 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=39.0
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC-C--HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-S--LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~-~--~~k~~~~~~~Ga~v~~~~ 68 (270)
|.+.+|+..+|--|+++|......|.++++...... . ......++..|.+++.+.
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALP 112 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEe
Confidence 456789999999999999999999998776543211 1 223445667788776654
No 263
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=60.12 E-value=1e+02 Score=25.71 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|.++|....+.|..+++..+...+. ...+.++..|.++..+.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 45678999999999999999999998877765543222 12334556687776553
No 264
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=60.00 E-value=41 Score=30.25 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=31.1
Q ss_pred CCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 12 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 12 ~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++|.+ |+...+|.-|.+++..|+.+|.+.+++.+. +..+.+.++.+|++.+
T Consensus 177 ~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~ 227 (375)
T PLN02178 177 ESGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSF 227 (375)
T ss_pred CCCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEE
Confidence 45654 444456888888888888888764444332 2233556677787543
No 265
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=59.97 E-value=58 Score=27.55 Aligned_cols=69 Identities=26% Similarity=0.284 Sum_probs=38.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecC
Q 024252 54 RMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIG 129 (270)
Q Consensus 54 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG 129 (270)
-+.+...||++.++--. +...++.++++++. +..++.|-+-. + .+....+..+|-++. +++|.+|-+++
T Consensus 25 Ak~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV~-~-d~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 25 AKALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDVT-N-DESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCCC-C-HHHHHHHHHHHHHhh-CcccEEEEEec
Confidence 34567778888776542 13345556666665 33333343222 2 344555555665555 46787777764
No 266
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=59.96 E-value=80 Score=32.49 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=28.7
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
.+.|+.-.+|-.|.+.|+..++.|.+++||=.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 34699999999999999999999999999843
No 267
>PRK08303 short chain dehydrogenase; Provisional
Probab=59.95 E-value=87 Score=27.20 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=44.4
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC-----------CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHH
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-----------SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAE 81 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~-----------~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~ 81 (270)
|...+|+..++--|.++|......|.+++++-.... -....+.++..|.+++.+..+ .+.++..+...
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 87 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVE 87 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 456788888888999999999999998777654311 012234456677766544321 23344444444
Q ss_pred HHHHh
Q 024252 82 EIRDK 86 (270)
Q Consensus 82 ~~~~~ 86 (270)
+..++
T Consensus 88 ~~~~~ 92 (305)
T PRK08303 88 RIDRE 92 (305)
T ss_pred HHHHH
Confidence 44444
No 268
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=59.83 E-value=68 Score=27.65 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=38.2
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.+.+.++||.+.++-+-.|--|..+.-.|+..|-.++... ...+|.+..+.+|++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~a---sTaeK~~~akenG~~ 193 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATA---STAEKHEIAKENGAE 193 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEe---ccHHHHHHHHhcCCc
Confidence 4677888998888888888888888777777775544332 234566666666665
No 269
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.80 E-value=90 Score=26.56 Aligned_cols=54 Identities=28% Similarity=0.426 Sum_probs=36.9
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+.+.+.+|...+|...+|..|.+++..++..|.++++..+ + .+.+.++.+|++-
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~ 191 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADP 191 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCE
Confidence 4567777776666656788888888888888887655432 2 4555556677643
No 270
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=59.79 E-value=33 Score=28.65 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=42.4
Q ss_pred cCCCCCCCcEEEeeCCcH----HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 8 KGLIRPGESVLIEPTSGN----TGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN----~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.|-+.+|...+|+...|. .+..+++.+.+.|-+|..|.-+..+..-++.++.+|.+
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 566888888888887666 55555666667899998888777777778888888874
No 271
>PRK06348 aspartate aminotransferase; Provisional
Probab=59.61 E-value=66 Score=28.87 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=35.0
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
.|+..+++.++..++..+-. +-.-.|+++.-.-..-...++.+|++++.++
T Consensus 91 ~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 91 EIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred hEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 58888888888877766542 2223555665454556777888999998876
No 272
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=59.50 E-value=1.2e+02 Score=29.03 Aligned_cols=68 Identities=24% Similarity=0.172 Sum_probs=52.7
Q ss_pred HHHHHc-C-CCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 3 ADAEEK-G-LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 3 ~~a~~~-g-~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
..++.+ | .+++|-...+.+...-+-..++++|-..|....-+=|...+.+...+++.-.+++++++..
T Consensus 59 A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~ 128 (537)
T KOG1176|consen 59 ASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDED 128 (537)
T ss_pred HHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCc
Confidence 344443 3 2666755555566677788889999999998888888888888999999999999999973
No 273
>PRK07550 hypothetical protein; Provisional
Probab=59.49 E-value=47 Score=29.77 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=36.0
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..++++++..++..+- .+-.-.|++|.-........++..|++++.++.
T Consensus 92 ~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 92 QVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred eEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 5777777788887766553 333345777764445556677899999998875
No 274
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=59.49 E-value=47 Score=28.81 Aligned_cols=48 Identities=27% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~-G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
|.+.+|...+|..|.+++..|+.+ |.+++.+.+. ..+.+.++.+|++-
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~ 197 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHH 197 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCE
Confidence 666556666788888888888876 8775555332 35566666777643
No 275
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=59.43 E-value=65 Score=28.70 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=39.9
Q ss_pred CCCCCCCcEEEeeCC--cHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHH----HHHHcCCEEEEeC
Q 024252 9 GLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASM--SLERRM----VLLAFGAELVLTD 68 (270)
Q Consensus 9 g~l~~g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~----~~~~~Ga~v~~~~ 68 (270)
|.++ |.+ |+-... .|.++|++.+++++|+.++++.|+.- +...+. ..+..|.++....
T Consensus 151 g~l~-g~k-ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 151 KPYK-DIK-FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred CCcC-CcE-EEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 6654 443 444444 58999999999999999999999853 222232 2346788887765
No 276
>PRK09134 short chain dehydrogenase; Provisional
Probab=59.30 E-value=1e+02 Score=25.58 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=37.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH--HHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE--RRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~--k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|..++....+.|.+++++...+.+.. -...++..|.++..+.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 456789999999999999999999998877655422211 1223444577776554
No 277
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.29 E-value=64 Score=27.45 Aligned_cols=48 Identities=29% Similarity=0.314 Sum_probs=35.9
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+|.+.+|...+|..|.+++..|+.+|.+.+...+ ...|...++.+|+.
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 179 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAA 179 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCc
Confidence 4666677777799999999999999987544432 35677777778885
No 278
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=59.29 E-value=50 Score=31.56 Aligned_cols=51 Identities=24% Similarity=0.140 Sum_probs=38.1
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.+++....|+.|+.+|-.-+..|.+++++- .++.+.+.++.+|.+++.-+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId---~d~~~~~~~~~~g~~~i~GD~ 468 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIE---TSRTRVDELRERGIRAVLGNA 468 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEE---CCHHHHHHHHHCCCeEEEcCC
Confidence 468889999999999998888888877663 345667777777766665554
No 279
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=59.27 E-value=35 Score=30.82 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=38.5
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
.+.++..++|..+..+++.+-..+=.-.|++|..........+...|+++++++-+
T Consensus 46 ~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 46 TKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 45678888888876666554322223456677766667777778899999998753
No 280
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=59.06 E-value=51 Score=32.05 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=42.3
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
..+|+....|..|+.+|-.-.+.|++++++ +.++.+.+.++.+|.++++-+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 346999999999999999999999998777 4566778888888887766664
No 281
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=58.93 E-value=50 Score=32.17 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=40.2
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---------C---------HHHHHHHHHcCCEEEEeC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---------S---------LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---------~---------~~k~~~~~~~Ga~v~~~~ 68 (270)
+.|+.-.+|-.|++.|+..++.|.+++||-.... + ...++.++.+|.+++.-.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 4689999999999999999999999988854421 1 124566788888876543
No 282
>PRK07806 short chain dehydrogenase; Provisional
Probab=58.78 E-value=1e+02 Score=25.33 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=37.0
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH-H-HHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-E-RRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~-~-k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|.+++......|.+++++....... . -...++..|.++..+.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 62 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVG 62 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEE
Confidence 35678888899999999999988999887765542211 1 1223455577665554
No 283
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=58.74 E-value=34 Score=27.38 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=24.7
Q ss_pred EEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 18 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
|..-.+|..|+++|+.+...|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 555678999999999999999999999664
No 284
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=58.70 E-value=26 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=26.6
Q ss_pred CcEEEeeC--CcHHHHHHHHHHHHcCCcEEEEeCCCC
Q 024252 15 ESVLIEPT--SGNTGIGLAFMAAAKGYRLIITMPASM 49 (270)
Q Consensus 15 ~~~vv~aS--sGN~g~alA~aa~~~G~~~~iv~p~~~ 49 (270)
+++|.-.| .|-+-..||.+|++.|+++.+++....
T Consensus 42 ATTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~ 78 (207)
T PF11814_consen 42 ATTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDG 78 (207)
T ss_pred hceecccCCCCCcChHHHHHHHHHcCCceEEEECCCC
Confidence 45555554 377778888889999999999998743
No 285
>PRK08278 short chain dehydrogenase; Provisional
Probab=58.69 E-value=1.1e+02 Score=25.81 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=38.5
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--------ERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--------~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|--|.++|-.....|.+++++.+...+. .-...++..|.+++.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 34678888999999999999999999887776543221 11234566777776554
No 286
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=58.67 E-value=57 Score=25.81 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=55.1
Q ss_pred CCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC
Q 024252 10 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPN 89 (270)
Q Consensus 10 ~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (270)
.+-.|+ .++...=|+-|+++|..++.+|..++|+ ++++.+..+-.+.|-++...+ + ..++ .+
T Consensus 19 ~~l~Gk-~vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~~~~------~-------a~~~-ad 80 (162)
T PF00670_consen 19 LMLAGK-RVVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVMTLE------E-------ALRD-AD 80 (162)
T ss_dssp S--TTS-EEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-HH------H-------HTTT--S
T ss_pred eeeCCC-EEEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEecCHH------H-------HHhh-CC
Confidence 333444 5899999999999999999999888777 456777777677787765321 1 1122 13
Q ss_pred ccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCc
Q 024252 90 SYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTG 131 (270)
Q Consensus 90 ~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~G 131 (270)
+++.-..+. ..+-.|.++|++ .+.|++.+|+-
T Consensus 81 -i~vtaTG~~-------~vi~~e~~~~mk--dgail~n~Gh~ 112 (162)
T PF00670_consen 81 -IFVTATGNK-------DVITGEHFRQMK--DGAILANAGHF 112 (162)
T ss_dssp -EEEE-SSSS-------SSB-HHHHHHS---TTEEEEESSSS
T ss_pred -EEEECCCCc-------cccCHHHHHHhc--CCeEEeccCcC
Confidence 333222222 224567888884 57888888764
No 287
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=58.46 E-value=88 Score=27.25 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=31.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++..-..|+.|++++..++.+|.+++++-+. +.+....+.+|++.+
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 4666677888888888888888766665332 445566667777643
No 288
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=58.44 E-value=1.1e+02 Score=25.79 Aligned_cols=51 Identities=35% Similarity=0.415 Sum_probs=29.5
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
..+.+|.+.+|...+|..|.+++..++..|.+.+++.+ +..+.+.++.+|+
T Consensus 135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~ 185 (323)
T cd05276 135 GGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGA 185 (323)
T ss_pred cCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCC
Confidence 45566666556555677777777777777766443322 2334444455554
No 289
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=58.29 E-value=87 Score=25.72 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=38.2
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--~k~~~~~~~Ga~v~~~~~ 69 (270)
+.+.+|+-.+|--|.++|......|..++++....... .....++..|.++..+..
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45678888999999999999988998876654432111 122445567878876654
No 290
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=58.26 E-value=1e+02 Score=25.09 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=37.4
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHH-HHHHHHcCCEEEEeC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER-RMVLLAFGAELVLTD 68 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k-~~~~~~~Ga~v~~~~ 68 (270)
.+.+|+..+|.-|..++......|..++++.+......+ ...++..|.++.++.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 457888899999999999988899996555543222111 334556787777654
No 291
>PRK07454 short chain dehydrogenase; Provisional
Probab=57.96 E-value=89 Score=25.56 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=36.2
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~-~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|.+++......|.+++++....... .....++..+.++.++.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYS 61 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 34568888899999999999999999877765432111 11223445566665544
No 292
>PRK14030 glutamate dehydrogenase; Provisional
Probab=57.94 E-value=60 Score=30.18 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=28.0
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEe
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITM 45 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~ 45 (270)
++++..+.....+|+....||-|..+|.....+|.+++.+-
T Consensus 218 ~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 218 MLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred HHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 33333334334468888888888888888888888777753
No 293
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=57.85 E-value=44 Score=30.37 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=35.2
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHc
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY--RLIITMPASMSLERRMVLLAF 60 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~--~~~iv~p~~~~~~k~~~~~~~ 60 (270)
++..+++|.+.+|...+|--|..+...|+.+|. ..++++ +.++.|++..+.+
T Consensus 169 ~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~ 222 (410)
T cd08238 169 HRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRL 222 (410)
T ss_pred hhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHh
Confidence 346678887656665679999998888988875 223333 3456677777775
No 294
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.81 E-value=96 Score=25.35 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=36.9
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~-~k~~~~~~~Ga~v~~~~~ 69 (270)
.+.+|+..+|..|.+++......|.+++++.+...+. .....++..|.+++.+..
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATA 63 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEEC
Confidence 4568888999999999999888999777765432111 112334556777765543
No 295
>PRK05876 short chain dehydrogenase; Provisional
Probab=57.80 E-value=87 Score=26.60 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=36.9
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
|...+|+-.+|--|+++|......|.+++++...... ......++..|.++..+.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~ 61 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVM 61 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 4567889899999999999999999986665433111 111234455677776554
No 296
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=57.54 E-value=75 Score=28.39 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=37.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHH----HcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLL----AFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~~~----~~Ga~v~~~~ 68 (270)
|.+..+..-..|.++++..+++++|+.++++.|+.- +...+..++ ..|.++....
T Consensus 154 glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 154 DCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 444333333378999999999999999999999853 333343333 4688887765
No 297
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=57.15 E-value=1.1e+02 Score=28.42 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=47.3
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH----HHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccc
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMV----LLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV 92 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~----~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (270)
..+..+||-.+..++..+- ++=.-.|++|...-...... ++.+|+++.+++...+.+ .++ +..+.+....|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~-~l~---~~I~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD-EIV---ALANDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH-HHH---HhCCcCCeEEE
Confidence 4677899999998888753 33334666676554433333 688999999998632222 222 22222234566
Q ss_pred cCCCCCCC
Q 024252 93 LQQFENPA 100 (270)
Q Consensus 93 ~~~~~~~~ 100 (270)
+....||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 66566665
No 298
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=57.12 E-value=63 Score=30.75 Aligned_cols=54 Identities=9% Similarity=-0.085 Sum_probs=41.9
Q ss_pred CCcEEEeeCC---cHHHHHHHHHHHHcC-CcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTS---GNTGIGLAFMAAAKG-YRLIITMPASM--SLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSs---GN~g~alA~aa~~~G-~~~~iv~p~~~--~~~k~~~~~~~Ga~v~~~~ 68 (270)
|.+ |+-... +|.++|++.+++++| ++++++.|+.- +...+..++..|+.+..+.
T Consensus 174 glk-Va~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 174 FIH-IALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CCE-EEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 443 555555 799999999999998 99999999864 4455566777899888766
No 299
>PRK06701 short chain dehydrogenase; Provisional
Probab=56.72 E-value=1.3e+02 Score=25.82 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=39.0
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~ 68 (270)
|.+.+|+..+|--|.++|....+.|.+++++...... ......++..|.++.++.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEE
Confidence 4567888889999999999999999987776554222 123344566687776554
No 300
>PRK06194 hypothetical protein; Provisional
Probab=56.65 E-value=1.2e+02 Score=25.69 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=37.4
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~~ 69 (270)
+.+.+|+..+|.-|.++|......|.+++++-..... ......+...|.++..+..
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRT 62 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEEC
Confidence 3457899999999999999999999987666432111 1222334455777766553
No 301
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=56.49 E-value=91 Score=25.79 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=36.9
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
|.+.+|+..+|.-|.++|....+.|.+++++-+.... ..-...++..|.++..+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 5667888899999999999988899987776553211 112233555676555443
No 302
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=56.35 E-value=94 Score=25.43 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=38.2
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~~ 69 (270)
+.+.+|+..+|.-|.+++......|.+++++.+.... ......++..+.++..+..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQV 62 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3567888899999999999998899887766554211 2223445666766665543
No 303
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=56.33 E-value=1.1e+02 Score=25.23 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=37.5
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHcCCEEEEeC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTD 68 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~-k~~~~~~~Ga~v~~~~ 68 (270)
.+.+|+..+|.-|.++|-.-...|.+++++.+...+.. ....++..+.++..+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVA 59 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45788888999999999999889998877755432222 2234555677765544
No 304
>PRK05867 short chain dehydrogenase; Provisional
Probab=56.31 E-value=96 Score=25.67 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=36.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
|...+|+-.+|.-|.++|......|.+++++-..... ......++..|.++..+.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVC 64 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4567888899999999999999999987665432111 111233455676665543
No 305
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.24 E-value=91 Score=25.55 Aligned_cols=55 Identities=20% Similarity=0.117 Sum_probs=36.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
|.+.+|+-.+|--|.++|......|..++++.+.... ....+.++..|.++..+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 4567888888999999999999999876665433111 122334556688776554
No 306
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=55.90 E-value=70 Score=27.43 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=32.3
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
.+.+|...+|..|.+++..|+.+|.+++++.+ +..+++.++.+|++-
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 194 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASE 194 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcE
Confidence 34455555688999988899999988544433 346677777788743
No 307
>PRK07791 short chain dehydrogenase; Provisional
Probab=55.88 E-value=1.1e+02 Score=26.17 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=44.9
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC---------C-CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHH
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS---------M-SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAE 81 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~---------~-~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~ 81 (270)
+|+..+|+-.++--|.++|....+.|.+++++.... . .......++..|.++..+..+ .+.++..+...
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 84 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD 84 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 345678999999999999999999999877664321 0 112233455667776655421 23344444444
Q ss_pred HHHHh
Q 024252 82 EIRDK 86 (270)
Q Consensus 82 ~~~~~ 86 (270)
+..++
T Consensus 85 ~~~~~ 89 (286)
T PRK07791 85 AAVET 89 (286)
T ss_pred HHHHh
Confidence 44444
No 308
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=55.87 E-value=79 Score=27.71 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=40.7
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHH----HHHcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMV----LLAFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~----~~~~Ga~v~~~~ 68 (270)
..|.++ |.+..+..-.+|..+|++.+++++|+.++++.|+.-. ....+. .+..|.++...+
T Consensus 142 ~~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 142 HFGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred HhCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 346554 4443333333799999999999999999999998532 233332 355788887665
No 309
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.84 E-value=1.2e+02 Score=25.70 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCcEEEeeCCc--HHHHHHHHHHHHcCCcEEEEeC
Q 024252 14 GESVLIEPTSG--NTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 14 g~~~vv~aSsG--N~g~alA~aa~~~G~~~~iv~p 46 (270)
|+..||+..++ .-|+++|....+.|.+++++-.
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 45567777765 7899999999999998777643
No 310
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=55.54 E-value=97 Score=26.06 Aligned_cols=50 Identities=34% Similarity=0.472 Sum_probs=35.5
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
+.+.+|.+.+|...+|..|.+++..++..|.+.+++.+. . +...++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~---~-~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASA---A-NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecc---h-hHHHHHHcCC
Confidence 457777765565557999999999999999886665442 2 4555567775
No 311
>PRK07035 short chain dehydrogenase; Provisional
Probab=55.51 E-value=1e+02 Score=25.40 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=36.2
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
.+.+|+..+|.-|.+++....+.|.+++++-..... ....+.+...|.++..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA 63 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 457899999999999999999999987766543211 112233445566665443
No 312
>PRK07324 transaminase; Validated
Probab=55.44 E-value=66 Score=28.80 Aligned_cols=52 Identities=10% Similarity=-0.070 Sum_probs=32.9
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..+++.++..+++.+- ++-.-.|+++.-.-..-....+.+|++++.++-
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 4777777777777666553 332233444443344445677899999998874
No 313
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=55.42 E-value=98 Score=25.38 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=37.0
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~-k~~~~~~~Ga~v~~~~~ 69 (270)
+.+.+|+-.+|.-|.++|......|..++++........ ....++..+.++.++..
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 355788999999999999999999988776654321111 12234555666665543
No 314
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=55.27 E-value=67 Score=31.10 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=64.7
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
.+++.+..|..|+.+|-.-...|++++++ +.++.+.+.++.+|.++++-+..+ .
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat~--~--------------------- 454 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVL---ERDISAVNLMRKYGYKVYYGDATQ--L--------------------- 454 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhCCCeEEEeeCCC--H---------------------
Confidence 46888999999999999888899988776 344667777777777666555421 1
Q ss_pred CCCCCchhhhhhchHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEE
Q 024252 96 FENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 153 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV 153 (270)
|++++.+ .+.|.++++.+.=-.-.-+....|+.+|+.++++-
T Consensus 455 ----------------~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 455 ----------------ELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred ----------------HHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 1222221 23567777776655555566667777788877764
No 315
>PRK06949 short chain dehydrogenase; Provisional
Probab=55.18 E-value=83 Score=26.00 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=28.0
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
+.+.+|+..+|.-|.++|......|.+++++.+.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567888899999999999999999987666543
No 316
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.97 E-value=1.2e+02 Score=24.88 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=28.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
+.+.+|+..+|.-|.+++......|.+++++...
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3467899999999999999999999997666554
No 317
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=54.96 E-value=1.1e+02 Score=25.31 Aligned_cols=55 Identities=22% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
+...+|+..+|.-|+++|....+.|.+++++-..... ......++..+.++..+.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAP 64 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 4567999999999999999999999877665433111 111233455566665544
No 318
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=54.95 E-value=66 Score=28.55 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=33.8
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+.+++|.+.+|. .+|--|.+++..|+.+|.+.+++... +..+...++.+|++..
T Consensus 176 ~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~ 229 (357)
T PLN02514 176 GLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDY 229 (357)
T ss_pred ccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEE
Confidence 555677654444 66888888888889998875554332 2223344466888643
No 319
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=54.67 E-value=1e+02 Score=25.57 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=37.0
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~-~k~~~~~~~Ga~v~~~~~ 69 (270)
+.+.+|+..+|--|.++|......|.+++++....... .....++..+.++..+..
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45678888999999999999988999876654431111 112234556777766543
No 320
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=54.61 E-value=42 Score=30.22 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=37.5
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
..++..++|..+..++..+-..+-.-.|++|...-......++.+|+++++++-
T Consensus 49 ~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 49 QHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred CeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 346677888877777665532222346777776666667788899999999874
No 321
>PRK05854 short chain dehydrogenase; Provisional
Probab=54.42 E-value=1.3e+02 Score=26.04 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=27.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
|.+.||+..++--|.++|..-.+.|.+++++.+.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567888888989999999888899887776543
No 322
>PRK12744 short chain dehydrogenase; Provisional
Probab=54.33 E-value=1.1e+02 Score=25.46 Aligned_cols=55 Identities=31% Similarity=0.213 Sum_probs=37.1
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC-CH----HHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SL----ERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~-~~----~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|.++|-.-...|.+++++..... .. ...+.++..|.++..+.
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 67 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQ 67 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEe
Confidence 346788889999999999999989999666653211 11 22334556677776554
No 323
>PRK06836 aspartate aminotransferase; Provisional
Probab=54.16 E-value=52 Score=29.68 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=33.1
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..++++++..++..+- ..-.-.|+++.-....-...++.+|++++.++.
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~ 149 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT 149 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec
Confidence 4777777788877665442 222234555554444456667889999999875
No 324
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=54.03 E-value=1e+02 Score=26.74 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=28.2
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+++..-..|+.|+++|..++.+|.+++++-+. ..+......+|.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 35777777888888888888888765555332 2334444445544
No 325
>PRK12831 putative oxidoreductase; Provisional
Probab=53.97 E-value=71 Score=29.76 Aligned_cols=56 Identities=20% Similarity=0.114 Sum_probs=41.2
Q ss_pred CCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC-----CHHHHHHHHHcCCEEEEeC
Q 024252 12 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-----SLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 12 ~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~-----~~~k~~~~~~~Ga~v~~~~ 68 (270)
.+|. .|+.-.+||.|.-+|..+.++|.+++++.++.. ....++.++..|.+++...
T Consensus 279 ~~gk-~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 279 KVGK-KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred cCCC-eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 3444 599999999999999999999999888876431 2234455667788776543
No 326
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=53.94 E-value=71 Score=28.15 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=29.6
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS 50 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~ 50 (270)
.|.+..+..-.+|.++|+..+++++|+.++++.|+..+
T Consensus 152 ~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 152 NQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 34543344445899999999999999999999998744
No 327
>PRK07677 short chain dehydrogenase; Provisional
Probab=53.86 E-value=1.1e+02 Score=25.32 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=34.9
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHcCCEEEEeC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTD 68 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~-k~~~~~~~Ga~v~~~~ 68 (270)
++.+|+..+|.-|.++|......|..++++........ ....++..+.+++.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45688889999999999999999997666543321111 1223444566665554
No 328
>PRK08912 hypothetical protein; Provisional
Probab=53.79 E-value=1.1e+02 Score=27.32 Aligned_cols=52 Identities=8% Similarity=-0.014 Sum_probs=34.4
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..+++.++..++..+-. +-.-.|+++.-....-...++.+|++++.++-
T Consensus 89 ~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~ 140 (387)
T PRK08912 89 EVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL 140 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEec
Confidence 47777888888876665532 22234555554445556677999999988764
No 329
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=53.60 E-value=1.5e+02 Score=25.75 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=29.5
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHcCC
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYR-LIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~-~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
...+.+|.+.+|. .+|..|.++...|+.+|.+ +++..+ +..+.+.++.+|+
T Consensus 154 ~~~~~~~~~vlI~-g~g~~g~~~~~lA~~~G~~~v~~~~~---~~~~~~~l~~~g~ 205 (343)
T cd08236 154 LAGITLGDTVVVI-GAGTIGLLAIQWLKILGAKRVIAVDI---DDEKLAVARELGA 205 (343)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCC
Confidence 3456666655555 4577777777777777776 333322 2344555555665
No 330
>PRK06138 short chain dehydrogenase; Provisional
Probab=53.55 E-value=1.2e+02 Score=24.86 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=35.2
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
|.+.+|+..+|--|.++|......|.+++++...... ......++ .+.++..+.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~ 59 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQ 59 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEE
Confidence 3467899999999999999888889886666543211 11122233 466665554
No 331
>PRK05370 argininosuccinate synthase; Validated
Probab=53.18 E-value=1.9e+02 Score=26.86 Aligned_cols=136 Identities=16% Similarity=0.137 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC-CC----C-HHHHHHHHHcCC-EEEEeCCCCChHHHHHHHH
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA-SM----S-LERRMVLLAFGA-ELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~-~~----~-~~k~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~ 81 (270)
..|.+|.+.|..+|.|.-..-+...-+.-|++++.|.-. .. + ..-.+....+|| +++.++-...|.+.. .
T Consensus 6 ~~l~~~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~--i- 82 (447)
T PRK05370 6 KHLPVGQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEG--I- 82 (447)
T ss_pred hhCCCCCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHH--H-
Confidence 356677777777788876665555555559988877532 11 1 233445678999 688888543332221 1
Q ss_pred HHHHhCCCcccc----CCCCCCCchhhhhhchHH---HHHHhhCCCCCEEEEec-CCchhHHHHHHHhhhcCCCeEEEEE
Q 024252 82 EIRDKTPNSYVL----QQFENPANPKIHYETTGP---EIWKGTGGKIDALVSGI-GTGGTVTGAGKYLKEHNPEIKLYGV 153 (270)
Q Consensus 82 ~~~~~~~~~~~~----~~~~~~~~~~~G~~t~~~---EI~~ql~~~~d~iv~~v-G~Gg~~aGi~~~~~~~~~~~~vigV 153 (270)
..-+. +..|. +.|.... ....--++. |+.++. ..|+|.-.+ |-|-=..=.=.+++.+.|+.+||+-
T Consensus 83 ~aI~a--nA~Y~~~~e~~Y~l~t--~LaRplia~~lv~~A~~~--ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~ViaP 156 (447)
T PRK05370 83 AAIQC--GAFHISTGGVTYFNTT--PLGRAVTGTMLVAAMKED--GVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYKP 156 (447)
T ss_pred HHHHc--CCccccccCccccCCC--cchHHHHHHHHHHHHHHh--CCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEecc
Confidence 22122 22221 1111111 112233333 444444 367777655 4566676777788888898888764
No 332
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=53.17 E-value=84 Score=27.76 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=32.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
.|+..++..++..++..+- ++-.-.|+++.-.-..-....+..|++++.++.+
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 4776776677766655442 2222344555434445566778899999988753
No 333
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=53.09 E-value=52 Score=29.54 Aligned_cols=53 Identities=32% Similarity=0.475 Sum_probs=38.0
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+.+++|.+.+|. ..|.-|.+++..|+.+|...++++.. +..|.+.++.+|++-
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~ 251 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADY 251 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCE
Confidence 577888776666 57999999999999999854444432 334777778888743
No 334
>PRK05866 short chain dehydrogenase; Provisional
Probab=52.96 E-value=1.1e+02 Score=26.37 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=36.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|--|.++|......|.+++++.+.... ......++..|.++..+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~ 95 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVP 95 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 3557888889999999999999999987776554211 111233444566665544
No 335
>PRK07890 short chain dehydrogenase; Provisional
Probab=52.93 E-value=1e+02 Score=25.38 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=36.8
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeC
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTD 68 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~-~k~~~~~~~Ga~v~~~~ 68 (270)
++.+.+|+-.+|.-|+++|......|.+++++-...... .....++..|.++..+.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 345678999999999999999999999877665432111 11223344566665544
No 336
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=52.76 E-value=1.4e+02 Score=24.95 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~-~~Ga~v~~~~ 68 (270)
+...+|+-.+|.-|.++|......|.+++++-.. ..+++.+. .+|.++..+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~ 57 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVE 57 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEE
Confidence 4567888899999999999999999987765332 23444443 3465565443
No 337
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.66 E-value=1e+02 Score=25.70 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=27.6
Q ss_pred CCCCCCCcEEEeeCC--cHHHHHHHHHHHHcCCcEEEEeC
Q 024252 9 GLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 9 g~l~~g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p 46 (270)
|.++ |+..+|+..+ +.-|+++|....+.|.++++.-+
T Consensus 3 ~~l~-~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 3 GILS-GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred cccC-CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 4443 4556777766 68999999999999998776643
No 338
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=52.60 E-value=28 Score=28.66 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=40.5
Q ss_pred cCCCCCCCcEEEeeCCcH----HHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 8 KGLIRPGESVLIEPTSGN----TGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN----~g~alA~aa~~~-G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.|-+.+|...+|+..+|. .+..+++.+.+. |-+|..|.-+..+..-++.++.+|.+
T Consensus 13 ~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d 73 (226)
T PF06745_consen 13 GGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWD 73 (226)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-
T ss_pred cCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCc
Confidence 567888888888887766 666667767666 99998887777777778888888863
No 339
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=52.55 E-value=1.3e+02 Score=26.67 Aligned_cols=51 Identities=29% Similarity=0.343 Sum_probs=30.2
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
+.+.+|.+.+|. .+|..|.+++..|+.+|.+.++++.. +..+.+.++.+|+
T Consensus 183 ~~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~ 233 (367)
T cd08263 183 ADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGA 233 (367)
T ss_pred ccCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCC
Confidence 445566655555 56778888888888887763333322 2344555555665
No 340
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=52.48 E-value=1.6e+02 Score=26.40 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=51.3
Q ss_pred HHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 3 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 3 ~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
..+++.++.++|. +++...-|--|.|.-..|+.+|-.-+|-+. ..+.|+..-+.+||+=.+-+
T Consensus 175 Gav~nta~v~~G~-tvaV~GlGgVGlaaI~gA~~agA~~IiAvD--~~~~Kl~~A~~fGAT~~vn~ 237 (366)
T COG1062 175 GAVVNTAKVEPGD-TVAVFGLGGVGLAAIQGAKAAGAGRIIAVD--INPEKLELAKKFGATHFVNP 237 (366)
T ss_pred HHhhhcccCCCCC-eEEEEeccHhHHHHHHHHHHcCCceEEEEe--CCHHHHHHHHhcCCceeecc
Confidence 3577889999997 599999999999999999999988777765 46788999999999654444
No 341
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=52.45 E-value=1.5e+02 Score=25.46 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=45.9
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH----H-HHcCCEEEEeCCCC-ChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMV----L-LAFGAELVLTDPAR-GMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~----~-~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 86 (270)
+.+.|||--|+.-|.++|-..++.|.+++++-+.. .|+.. + +.+|-+|...+-+- +.++..+...++.++
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~---~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARRE---DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH---HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 45689999999999999999999999999997763 33332 2 34667666554321 223333444444433
No 342
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=52.35 E-value=47 Score=25.71 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=34.9
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEE
Q 024252 54 RMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALV 125 (270)
Q Consensus 54 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv 125 (270)
.+.++..|.+|+..+....-++..+.| .+++.+..-++.. ..+|.+...++.+.+.. .+++|.
T Consensus 33 a~~l~d~GfeVi~~g~~~tp~e~v~aA---~~~dv~vIgvSsl------~g~h~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 33 ARALADAGFEVINLGLFQTPEEAVRAA---VEEDVDVIGVSSL------DGGHLTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred HHHHHhCCceEEecCCcCCHHHHHHHH---HhcCCCEEEEEec------cchHHHHHHHHHHHHHHhCCcceE
Confidence 456778888888877543333333322 2333233333322 35778888888777742 255555
No 343
>PRK06500 short chain dehydrogenase; Provisional
Probab=51.71 E-value=1.3e+02 Score=24.54 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=36.1
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHH-HHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRM-VLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~-~~~~~Ga~v~~~~ 68 (270)
|.+.+|+..+|.-|.+++......|.+++++.+. ..++. ..+.+|.++..+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIR 58 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEE
Confidence 4567889999999999999999999987665432 23332 2345577765543
No 344
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=51.54 E-value=71 Score=29.53 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=33.9
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+|. +++....|+-|+.+|..++.+|.+++++ . .++.|.......|.++
T Consensus 211 ~Gk-~VlViG~G~IG~~vA~~lr~~Ga~ViV~-d--~dp~ra~~A~~~G~~v 258 (425)
T PRK05476 211 AGK-VVVVAGYGDVGKGCAQRLRGLGARVIVT-E--VDPICALQAAMDGFRV 258 (425)
T ss_pred CCC-EEEEECCCHHHHHHHHHHHhCCCEEEEE-c--CCchhhHHHHhcCCEe
Confidence 454 5888889999999999999999975554 2 2334444445567764
No 345
>PRK06181 short chain dehydrogenase; Provisional
Probab=51.37 E-value=1.1e+02 Score=25.36 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=35.8
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+|+..+|.-|.+++......|.+++++.+.... ....+.++..|.++..+.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 46888899999999999998999887776543211 112333455677766554
No 346
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=51.37 E-value=1.7e+02 Score=25.79 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=27.4
Q ss_pred hHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCC-CeEEEEEe
Q 024252 109 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP-EIKLYGVE 154 (270)
Q Consensus 109 ~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~-~~~vigV~ 154 (270)
...++++.- +++|.||++ +.....|+..++++.+. ++.|+|.+
T Consensus 199 ~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 199 TAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred HHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeC
Confidence 334444443 568999987 33445578888887653 56677764
No 347
>PRK08264 short chain dehydrogenase; Validated
Probab=51.30 E-value=83 Score=25.67 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=27.3
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPA 47 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~ 47 (270)
.+.+|+..+|.-|.++|......|. +++++.+.
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4578888999999999999999998 76666543
No 348
>PRK05973 replicative DNA helicase; Provisional
Probab=51.21 E-value=67 Score=27.10 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=40.7
Q ss_pred cCCCCCCCcEEEeeCC--cH--HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 8 KGLIRPGESVLIEPTS--GN--TGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSs--GN--~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.|.+.||..++|.+.+ |= .+.-+|+.+.+.|-++..|--+..+..-.+++..+|.+
T Consensus 58 ~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~d 117 (237)
T PRK05973 58 FSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGAD 117 (237)
T ss_pred cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCCC
Confidence 3678888888888855 44 44445666667798888887777777778888888753
No 349
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=51.05 E-value=1.1e+02 Score=25.03 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=35.7
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHH-HHHHHcCCEEEEeC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR-MVLLAFGAELVLTD 68 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~-~~~~~~Ga~v~~~~ 68 (270)
+.+|+-.+|-.|++++....+.|.+++++.+......++ ..++..+.++..+.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLV 56 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 468888999999999999888999877775542211121 22344566776554
No 350
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=51.01 E-value=1e+02 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=24.7
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 48 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~ 48 (270)
+++.-.+|-.++|++++....|++-+.++.++
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 56667778889999999999998766666554
No 351
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=50.92 E-value=1.3e+02 Score=26.99 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=33.0
Q ss_pred EEEeeCCcHHHHHHHHHHHH-c-CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAA-K-GYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~-~-G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..+++.++..++..+-. - |-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~ 146 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNC 146 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEecc
Confidence 47777788888776655432 1 11224455543444455667889999998874
No 352
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=50.90 E-value=2e+02 Score=26.31 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=66.0
Q ss_pred EEeeCCcH-HHHHHHHHHHHcCCcEEEEeCC-C---CC-HHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHhCCCc
Q 024252 18 LIEPTSGN-TGIGLAFMAAAKGYRLIITMPA-S---MS-LERRMVLLAFGA-ELVLTDPARGMKGAVQKAEEIRDKTPNS 90 (270)
Q Consensus 18 vv~aSsGN-~g~alA~aa~~~G~~~~iv~p~-~---~~-~~k~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 90 (270)
|+.+|.|= +...+.|...+.+.+++.|.-. . .. ..-.+....+|| +++.++..+.+.+ +.+...-+. +.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~--~~i~~aI~a--nA 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAE--DYIFPAIKA--NA 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHH--HTHHHHHHT--T-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHH--HHHHHHHHH--HH
Confidence 34566663 4455566667777888877532 1 12 223344678999 9999986322221 111111121 23
Q ss_pred cccCCCCC---CCchhhhhhchHHHHHHhhCCCCCEEEE-ecCCchhHHHHHHHhhhcCCCeEEEE
Q 024252 91 YVLQQFEN---PANPKIHYETTGPEIWKGTGGKIDALVS-GIGTGGTVTGAGKYLKEHNPEIKLYG 152 (270)
Q Consensus 91 ~~~~~~~~---~~~~~~G~~t~~~EI~~ql~~~~d~iv~-~vG~Gg~~aGi~~~~~~~~~~~~vig 152 (270)
.|-..|-. ...|+ ......|+.++.+ .++|.- ++|.|--..=.=.+++.+.|+.+|++
T Consensus 77 ~Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~g--a~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPL--IAKKLVEVAREEG--ADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -BTTTB--CCCCHHHH--HHHHHHHHHHHHT---SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HhCCCccccccchHHH--HHHHHHHHHHHcC--CeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 33333311 11222 2333446666663 688888 55888888888889999999988865
No 353
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=50.68 E-value=48 Score=34.76 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=40.4
Q ss_pred CHHHHHHcCCCCCC------CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC
Q 024252 1 MIADAEEKGLIRPG------ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 48 (270)
Q Consensus 1 ~i~~a~~~g~l~~g------~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~ 48 (270)
||+.|.++||++|- .++|..-.||-.|.+.|-.-.+.|-.++||-+.+
T Consensus 1765 iid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1765 IIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred HHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 57889999999872 2368888999999999999999999999986653
No 354
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=50.67 E-value=91 Score=27.81 Aligned_cols=52 Identities=10% Similarity=-0.134 Sum_probs=31.7
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..+++.++..+...+- ..=.-.|+++.-.-..-...++.+|.+++.++.
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~ 141 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTV 141 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeec
Confidence 4676677777766554442 222223444543444556677899999998875
No 355
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=50.55 E-value=72 Score=23.08 Aligned_cols=94 Identities=22% Similarity=0.131 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC--CCChHHHHHHHHHHHHhCCCccccCCCCCCCchhh
Q 024252 27 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP--ARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKI 104 (270)
Q Consensus 27 g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 104 (270)
-..+|.+.++.|.++.++=.......-.+.++.+..+++.++. ...+....+.++...+..++... ...
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~i---------v~G 87 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPI---------VVG 87 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEE---------EEE
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEE---------EEE
Confidence 3456666688899888663332234445678888899887764 12333444444443333333222 133
Q ss_pred h-hhchHHHH-HHhhCCCCCEEEEecCC
Q 024252 105 H-YETTGPEI-WKGTGGKIDALVSGIGT 130 (270)
Q Consensus 105 G-~~t~~~EI-~~ql~~~~d~iv~~vG~ 130 (270)
| +.+..+|. ++.. ...|+++..=|-
T Consensus 88 G~~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 88 GPHATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp ESSSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred CCchhcChHHHhccC-cCcceecCCChH
Confidence 4 33555553 4331 247888776553
No 356
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.55 E-value=51 Score=28.64 Aligned_cols=74 Identities=24% Similarity=0.294 Sum_probs=50.0
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHH-HHHHHcCC-E-EEEeCCC-CChHHHHHHHHHHHHhC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR-MVLLAFGA-E-LVLTDPA-RGMKGAVQKAEEIRDKT 87 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~-~~~~~~Ga-~-v~~~~~~-~~~~~~~~~a~~~~~~~ 87 (270)
|+..+||-.|.--|.++|+--.+.|.+.+++........++ +.++..++ + ++...-+ .+.+++.+...+..++.
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 45578888888899999999999999999999887777776 77776655 3 4444321 13344444443443343
No 357
>PRK07814 short chain dehydrogenase; Provisional
Probab=50.46 E-value=1.2e+02 Score=25.32 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=35.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEe
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLT 67 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~-~k~~~~~~~Ga~v~~~ 67 (270)
+.+.+|+..+|--|.++|-.....|.+++++.+..... .....++..|.++..+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~ 64 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVV 64 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 45678999999999999999988999877665431111 1122344446555544
No 358
>PLN00175 aminotransferase family protein; Provisional
Probab=50.34 E-value=76 Score=28.95 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=33.4
Q ss_pred EEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 18 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
|+..+++.++..++..+- ++-.-.|+++.-.-..-...++.+|++++.++-
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTL 168 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEEC
Confidence 677777788877666643 332234555544445556778899999998864
No 359
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=50.31 E-value=48 Score=23.10 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=30.2
Q ss_pred HHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 113 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 113 I~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
.+++.-...|.+++-...|...--++-.++.+..+|.|+.|+..+.-.
T Consensus 4 ~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~v 51 (84)
T PF11760_consen 4 LLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFV 51 (84)
T ss_dssp -HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EE
T ss_pred HHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEE
Confidence 344443568999999999999999999999999999999999888743
No 360
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=50.12 E-value=1.1e+02 Score=26.67 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=37.3
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.++..++|..+..++..+-..+-.-.|++|..........++.+|++++.++-
T Consensus 35 ~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (352)
T cd00616 35 YAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDI 87 (352)
T ss_pred eEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEec
Confidence 45666788777666655432333356778887777778888899999999875
No 361
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=50.09 E-value=1.2e+02 Score=24.70 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=68.4
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHH
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS---MSLERRMVLLAFGA-ELVLTDPARGMKGAVQKAEEIR 84 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~---~~~~k~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~ 84 (270)
=.++||. .+..-.+|.-..++-++ +.+=.+.++-=+. .-..-.+.++.||. ++.++.+.. .++.. .+
T Consensus 30 L~~~~g~-~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~---~~- 100 (187)
T COG2242 30 LRPRPGD-RLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALP---DL- 100 (187)
T ss_pred hCCCCCC-EEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhc---CC-
Confidence 3466775 58888888888888877 4444444443221 11222344567776 355555421 11111 00
Q ss_pred HhCCCccccCCCCCCCchhhhhhchHHHH-HHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 85 DKTPNSYVLQQFENPANPKIHYETTGPEI-WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~G~~t~~~EI-~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
. .++..|+....+ -+--+|. ++-+ .+-..+|+-+-+=-+++-+...++.++-. .++=++...+..+
T Consensus 101 ~-~~daiFIGGg~~--------i~~ile~~~~~l-~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~l 167 (187)
T COG2242 101 P-SPDAIFIGGGGN--------IEEILEAAWERL-KPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGKPL 167 (187)
T ss_pred C-CCCEEEECCCCC--------HHHHHHHHHHHc-CcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecceec
Confidence 0 123344322110 1111222 2223 23457777777777777888888877654 6666665555433
No 362
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=49.95 E-value=1.4e+02 Score=26.80 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=34.5
Q ss_pred EEEeeCCcHHHHHHHHHHH-HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAA-AKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~-~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..+++.++..++..+- .-|=...|++|.-.-..-....+.+|++++.++-
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 145 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNC 145 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeec
Confidence 4777778888877766542 2343335677753444445567889999998864
No 363
>PRK08265 short chain dehydrogenase; Provisional
Probab=49.32 E-value=1.6e+02 Score=24.63 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=35.4
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHH-HHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRM-VLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~-~~~~~Ga~v~~~~ 68 (270)
+.+.+|+-.+|--|+++|....+.|.+++++-.. ..+.+ ..+..+.++..+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDID---ADNGAAVAASLGERARFIA 58 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeeEEEE
Confidence 3567888899999999999999999977666433 22222 2344566665543
No 364
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=49.31 E-value=1.6e+02 Score=24.89 Aligned_cols=36 Identities=39% Similarity=0.575 Sum_probs=19.8
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIIT 44 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv 44 (270)
+.+.++.+.+|...+|..|++++..++..|.+.+++
T Consensus 140 ~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~ 175 (328)
T cd08268 140 AGLRPGDSVLITAASSSVGLAAIQIANAAGATVIAT 175 (328)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEE
Confidence 445555544444445666666666666666554333
No 365
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=49.30 E-value=1.5e+02 Score=24.39 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=36.7
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~~ 69 (270)
+.+|+..+|--|.++|......|.+++++-..... ....+.++..|.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKL 56 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 35888899999999999999999886666443111 1123445667877766543
No 366
>PRK07774 short chain dehydrogenase; Provisional
Probab=49.22 E-value=1.5e+02 Score=24.33 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=28.2
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
+.+.+|+..+|--|.+++......|.+++++-+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3457899999999999999999999987776543
No 367
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=49.15 E-value=62 Score=28.37 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=39.3
Q ss_pred HcCCCCCCCcEEEeeCC-cHHHHHHHHHHHHcCCcEEEEeCCCC-CH-HHH----HHHHHcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPTS-GNTGIGLAFMAAAKGYRLIITMPASM-SL-ERR----MVLLAFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~-~~-~k~----~~~~~~Ga~v~~~~ 68 (270)
..|.++ |.+ |+-... -|.++|++.+++++|++++++.|+.- ++ ..+ ...+..|+++..++
T Consensus 141 ~~g~l~-g~k-va~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 141 QFGDVS-KVK-LAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred HhCCcC-CcE-EEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 346554 444 333333 56779999999999999999999853 22 222 12456788887766
No 368
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=49.05 E-value=1e+02 Score=28.74 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=22.4
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEe
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITM 45 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~ 45 (270)
++|+....||-|..+|.....+|.+++-+.
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~GakVVavS 267 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQLGAKVLTMS 267 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 468888888888888888877777766443
No 369
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=48.94 E-value=72 Score=28.48 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=36.8
Q ss_pred EEEeeCCc--HHHHHHHHHHHHcCCcEEEEeCCCCC--HHHH----HHHHHcCCEEEEeC
Q 024252 17 VLIEPTSG--NTGIGLAFMAAAKGYRLIITMPASMS--LERR----MVLLAFGAELVLTD 68 (270)
Q Consensus 17 ~vv~aSsG--N~g~alA~aa~~~G~~~~iv~p~~~~--~~k~----~~~~~~Ga~v~~~~ 68 (270)
+|.-...+ |.++|+..+++++|+.++++.|+.-. ...+ ...+..|.++...+
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 158 TLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 35444544 78999999999999999999998532 2222 23455788887766
No 370
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=48.94 E-value=1.3e+02 Score=25.49 Aligned_cols=94 Identities=11% Similarity=0.106 Sum_probs=45.3
Q ss_pred HHHHHHHHHHc--CCcEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCcccc---CCCCCCC
Q 024252 27 GIGLAFMAAAK--GYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVL---QQFENPA 100 (270)
Q Consensus 27 g~alA~aa~~~--G~~~~iv~p~-~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 100 (270)
|..+.++++++ |.+..- ++. +--..-++.....|-.|.++++.. ....+.++.+.++. +.-.+ ++|-++.
T Consensus 69 G~gvv~~~~~~~~~~~~~R-v~G~dl~~~ll~~~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~ 144 (243)
T PRK03692 69 GISVVRSIRKKYPQAQVSR-VAGADLWEALMARAGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFTPE 144 (243)
T ss_pred CHHHHHHHHHhcCCCCCCe-eChHHHHHHHHHHHHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCCHH
Confidence 34566777665 333111 111 111223334456788999998642 22233334444444 32211 2222211
Q ss_pred chhhhhhchHHHHHHhhC-CCCCEEEEecCCch
Q 024252 101 NPKIHYETTGPEIWKGTG-GKIDALVSGIGTGG 132 (270)
Q Consensus 101 ~~~~G~~t~~~EI~~ql~-~~~d~iv~~vG~Gg 132 (270)
+ -.+|.+++. ..||.++++.|.-=
T Consensus 145 ---e-----~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 145 ---Q-----RQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred ---H-----HHHHHHHHHhcCCCEEEEECCCcH
Confidence 1 123555553 35999999998743
No 371
>PRK09072 short chain dehydrogenase; Provisional
Probab=48.83 E-value=1.3e+02 Score=25.10 Aligned_cols=34 Identities=35% Similarity=0.423 Sum_probs=28.1
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
+...+|+..+|-.|.+++......|.+++++...
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 4567889999999999999999999987776543
No 372
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.69 E-value=1.5e+02 Score=24.35 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=36.8
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~ 68 (270)
..+|+-.+|.-|.++|..-...|.+++++.....+ ......++..+.++..+.
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFP 58 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEE
Confidence 36888899999999999999999987776544222 122344555677666554
No 373
>PRK13243 glyoxylate reductase; Reviewed
Probab=48.58 E-value=1.1e+02 Score=27.03 Aligned_cols=104 Identities=23% Similarity=0.203 Sum_probs=62.4
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++|..-.-||-|+++|-.++.+|++++++-+. .... ..+.+|.+. . +++ ++.++- +...++-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~-~~~~---~~~~~~~~~---~---~l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRT-RKPE---AEKELGAEY---R---PLE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCC-CChh---hHHHcCCEe---c---CHH-------HHHhhC-CEEEEeC
Confidence 36888888999999999999999988766543 2221 223445421 1 122 222332 3333222
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHH--HHHHHhhh
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT--GAGKYLKE 143 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~a--Gi~~~~~~ 143 (270)
|.. ..-...+..|.+++++ ++.+++-+|.|+..- .+..+++.
T Consensus 213 ---P~t-~~T~~~i~~~~~~~mk--~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 213 ---PLT-KETYHMINEERLKLMK--PTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred ---CCC-hHHhhccCHHHHhcCC--CCeEEEECcCchhcCHHHHHHHHHc
Confidence 112 1223445667888874 799999999999864 34444443
No 374
>PRK06841 short chain dehydrogenase; Provisional
Probab=48.50 E-value=1.5e+02 Score=24.34 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=27.5
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
+.+.+|+..+|--|.++|......|.+++++.+.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567888889999999999999999987666543
No 375
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.47 E-value=1.3e+02 Score=24.71 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=37.3
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~ 68 (270)
.+.+|+..+|--|.+++......|.++++....... ......++..|.++..+.
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 457888889999999999988899987665543221 223345667777766554
No 376
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=48.44 E-value=2e+02 Score=25.63 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=31.6
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..+++..+..++..+- ..-.-.|+++.-.-..-....+.+|++++.++-
T Consensus 93 ~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 93 EVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144 (383)
T ss_pred eEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec
Confidence 3666677777777765542 222234555443334445567889999998764
No 377
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=48.35 E-value=1.1e+02 Score=27.40 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=35.9
Q ss_pred EEeeCC--cHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHH----HHHHcCCEEEEeC
Q 024252 18 LIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMS--LERRM----VLLAFGAELVLTD 68 (270)
Q Consensus 18 vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~----~~~~~Ga~v~~~~ 68 (270)
|.-... -|.++++..+++++|++++++.|+.-. ...+. ..+..|+++...+
T Consensus 159 va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 159 LVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 444444 389999999999999999999998532 22222 2355688877665
No 378
>PRK06483 dihydromonapterin reductase; Provisional
Probab=48.33 E-value=1.5e+02 Score=24.15 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=38.7
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
++.+|+..+|--|+++|......|.+++++-... ....+.++..|+..+.++-
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D~ 55 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQADF 55 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcCC
Confidence 3568899999999999999999999877765432 2234555667877766664
No 379
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=48.28 E-value=2e+02 Score=25.60 Aligned_cols=85 Identities=13% Similarity=0.240 Sum_probs=50.9
Q ss_pred cEEEeeCCcHHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHH-HHHHHHHHHHhCCCcccc
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG-AVQKAEEIRDKTPNSYVL 93 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~-G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~ 93 (270)
.+++.++||..|.-.|+.=-.. |=++.++.-..-...-.+..++||++|..++.+.+-.- -......+++..+..+++
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 4688888888776544433222 33344444443455567788999999999974322111 233455666666777777
Q ss_pred CCCCCCC
Q 024252 94 QQFENPA 100 (270)
Q Consensus 94 ~~~~~~~ 100 (270)
-+.++..
T Consensus 149 ~hgdsST 155 (385)
T KOG2862|consen 149 THGDSST 155 (385)
T ss_pred EecCccc
Confidence 7765543
No 380
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=48.26 E-value=1.6e+02 Score=24.39 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=36.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~-k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|.+++......|.+++++.+...... -...++..|.++..+.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~ 66 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 456788889999999999999999988776654321111 1233455676665543
No 381
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=48.20 E-value=1.2e+02 Score=27.54 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=57.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCcccc-CC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVL-QQ 95 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 95 (270)
+|-.-.-||-|..+|..++.+|+++..+=|..... +....+ .++ .++.++- +...+ -|
T Consensus 118 tvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~~~~----~~L-------~ell~~s-DiI~lh~P 176 (378)
T PRK15438 118 TVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDEGDF----RSL-------DELVQEA-DILTFHTP 176 (378)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------cccccc----CCH-------HHHHhhC-CEEEEeCC
Confidence 57777888888888888888888887774421100 100000 112 2333332 33222 22
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhH--HHHHHHhhh
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV--TGAGKYLKE 143 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~--aGi~~~~~~ 143 (270)
.... ....-+.-+..+.+++|+ ++.+++-+|-|+.+ ..+..+++.
T Consensus 177 Lt~~-g~~~T~~li~~~~l~~mk--~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 177 LFKD-GPYKTLHLADEKLIRSLK--PGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred CCCC-cccccccccCHHHHhcCC--CCcEEEECCCchhcCHHHHHHHHHh
Confidence 2211 001123445667888884 78999999999986 455556554
No 382
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=48.06 E-value=55 Score=31.97 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=38.4
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---------C---------HHHHHHHHHcCCEEEE
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---------S---------LERRMVLLAFGAELVL 66 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---------~---------~~k~~~~~~~Ga~v~~ 66 (270)
+.|+.-.+|-.|++.|...++.|.+++||=.... + ...++.++.+|.+++.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 4699999999999999999999999888843321 1 1134567788887764
No 383
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=47.96 E-value=78 Score=28.97 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHHcCCEEEEeC
Q 024252 24 GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMV----LLAFGAELVLTD 68 (270)
Q Consensus 24 GN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~----~~~~Ga~v~~~~ 68 (270)
.|-++|++.+++++|++++++.|+.- .+..+.. .+..|..+...+
T Consensus 204 ~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 204 LSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred chHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 37789999999999999999999853 3333333 466788887765
No 384
>PRK06198 short chain dehydrogenase; Provisional
Probab=47.88 E-value=1.6e+02 Score=24.34 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=36.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|..+|......|...++++...... .....++..|.++..+.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 62 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQ 62 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 34568888889999999999999999844444443221 12234566788876544
No 385
>PRK07985 oxidoreductase; Provisional
Probab=47.66 E-value=1.6e+02 Score=25.33 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=36.4
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCH--HHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSL--ERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~--~k~~~~~~~Ga~v~~~~ 68 (270)
|.+.+|+-.+|.-|.++|......|.+++++-... ... .....++..|.+++.+.
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLP 106 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEE
Confidence 35679999999999999999999999877653321 111 11223445677765543
No 386
>PRK07775 short chain dehydrogenase; Provisional
Probab=47.62 E-value=1.7e+02 Score=24.62 Aligned_cols=55 Identities=22% Similarity=0.157 Sum_probs=36.5
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHcCCEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTDP 69 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~-k~~~~~~~Ga~v~~~~~ 69 (270)
...+|+..+|--|.+++-.....|..++++........ -...++..|.++..+..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 35688888899999999999889998766654321111 12235566777766543
No 387
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=47.56 E-value=1.4e+02 Score=26.96 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=40.1
Q ss_pred CcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC--hHHHHHHHHHHHHhCCCcc-ccCCC-CCCCchhhhhhchHHHHH
Q 024252 39 YRLIITMPASMSLERRMVLLAFGAELVLTDPARG--MKGAVQKAEEIRDKTPNSY-VLQQF-ENPANPKIHYETTGPEIW 114 (270)
Q Consensus 39 ~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~~G~~t~~~EI~ 114 (270)
+|..++..++.-..--+.++.+|-++.++.+... .....+...+..++.+-.+ ..+.. .||.. . .-.-+.+++
T Consensus 3 ~p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~--~-~v~~~~~~~ 79 (380)
T cd08185 3 QPTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT--T-TVMEGAALA 79 (380)
T ss_pred CCCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCH--H-HHHHHHHHH
Confidence 3455555554433334456667777776664322 1233444444444431112 11111 23332 1 111122334
Q ss_pred HhhCCCCCEEEEecCCchhH
Q 024252 115 KGTGGKIDALVSGIGTGGTV 134 (270)
Q Consensus 115 ~ql~~~~d~iv~~vG~Gg~~ 134 (270)
++. ++| +|+++|+|..+
T Consensus 80 ~~~--~~D-~IiavGGGS~i 96 (380)
T cd08185 80 REE--GCD-FVVGLGGGSSM 96 (380)
T ss_pred HHc--CCC-EEEEeCCccHH
Confidence 442 477 55778877654
No 388
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=47.48 E-value=64 Score=28.90 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=34.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYR--LIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~--~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
..+..++|..+..+++.+ ++++ -.|++|......-...++..|+++++++-
T Consensus 46 ~~v~~~sgt~al~~~l~a--l~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~ 98 (380)
T TIGR03588 46 YAVAFNSATSALHIACLA--LGVGPGDRVWTTPITFVATANCALYCGAKVDFVDI 98 (380)
T ss_pred eEEEEcCHHHHHHHHHHH--cCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEec
Confidence 345556677666555544 4432 36777776666667778899999999875
No 389
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=47.41 E-value=1.7e+02 Score=24.41 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=42.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH--HHHHHH-HcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE--RRMVLL-AFGAELVLTDPA-RGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~--k~~~~~-~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 86 (270)
|++.+|+..++.-|+++|....+.|.+++++.+.+.... ....++ .+|.++..+..+ .+.++..+...++.++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999998776644322111 112232 356666554432 2333444444444443
No 390
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=47.22 E-value=64 Score=27.91 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=25.5
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
+.++.-.+|..|++++++....|++-+.++.+
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 35788888999999999999999865555554
No 391
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.81 E-value=1.7e+02 Score=24.42 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=33.1
Q ss_pred CCcEEEeeCC--cHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-Hc-CCEEEEe
Q 024252 14 GESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AF-GAELVLT 67 (270)
Q Consensus 14 g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~-~~-Ga~v~~~ 67 (270)
|+..||+..+ +.-|+++|..-.+.|.++++.-.......+++.+. .. |.+++.+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLL 64 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEE
Confidence 4556777754 78999999999999998776543322233344332 22 4455443
No 392
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=46.76 E-value=96 Score=27.22 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCcEEEEe---CCCCC-HH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCc-cccCCCCCC
Q 024252 29 GLAFMAAAKGYRLIITM---PASMS-LE----RRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS-YVLQQFENP 99 (270)
Q Consensus 29 alA~aa~~~G~~~~iv~---p~~~~-~~----k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 99 (270)
+..|.++.+|++..-++ |+..+ +. -++.++..+.++++++...+ .+.++.++++.+.. .+++|+.+.
T Consensus 212 af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~----~~~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFR----PAVIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCC----hHHHHHHHHhcCCeEEEecccccc
Confidence 78999999999976544 23222 22 24567889999999997432 23445555554322 345666543
Q ss_pred Cch-hhhhhchHHHHHHhh
Q 024252 100 ANP-KIHYETTGPEIWKGT 117 (270)
Q Consensus 100 ~~~-~~G~~t~~~EI~~ql 117 (270)
... ...|..+..+..+++
T Consensus 288 ~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 288 IKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred ccCCHhHHHHHHHHHHHHH
Confidence 321 134666665555554
No 393
>PRK14057 epimerase; Provisional
Probab=46.53 E-value=1.8e+02 Score=24.82 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=24.8
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 35 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 35 ~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
...|+++.|-+..+.+..++..+...||++++.+
T Consensus 188 ~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 188 GDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred HhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 3456677777777777777777777788777665
No 394
>PRK07576 short chain dehydrogenase; Provisional
Probab=46.51 E-value=1.7e+02 Score=24.49 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=36.1
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+|+..+|.-|.++|......|.+++++-+.... ......+...+.+++.+.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 4567888899999999999998999987666543211 111233455566665443
No 395
>PRK08017 oxidoreductase; Provisional
Probab=46.41 E-value=1.7e+02 Score=24.12 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=38.4
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+.+|+..+|.-|.++|......|.+++++.+. ..+++.++..|.+.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 46788888999999999999999887665443 3556666677887777664
No 396
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=46.13 E-value=1.1e+02 Score=26.60 Aligned_cols=47 Identities=26% Similarity=0.261 Sum_probs=27.1
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
+|.+.+|.+ +|..|.+++..|+.+|.+.++++.. ++.+...++.+|+
T Consensus 165 ~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~~~~~--s~~~~~~~~~~g~ 211 (339)
T cd08232 165 AGKRVLVTG-AGPIGALVVAAARRAGAAEIVATDL--ADAPLAVARAMGA 211 (339)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCC
Confidence 565555544 5677777777777777733333322 2344455566665
No 397
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=46.10 E-value=1e+02 Score=28.09 Aligned_cols=90 Identities=8% Similarity=-0.042 Sum_probs=42.3
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHcCCEE-EEeCCCCChHH--HHHHHHHHHHhCCCccc-c-C-CCCCCCchhhhhhchH
Q 024252 37 KGYRLIITMPASMSLERRMVLLAFGAEL-VLTDPARGMKG--AVQKAEEIRDKTPNSYV-L-Q-QFENPANPKIHYETTG 110 (270)
Q Consensus 37 ~G~~~~iv~p~~~~~~k~~~~~~~Ga~v-~~~~~~~~~~~--~~~~a~~~~~~~~~~~~-~-~-~~~~~~~~~~G~~t~~ 110 (270)
+-.|..|+...+.-..--..++.+|.+. .++.+ ..... ..+...+..++. +..+ + + ...||.. -.-.-+
T Consensus 24 f~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~-~~~~~~g~~~~v~~~L~~~-gi~~~~~~~v~~~P~~---~~v~~~ 98 (395)
T PRK15454 24 FSVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMAD-SFLHQAGMTAGLTRSLAVK-GIAMTLWPCPVGEPCI---TDVCAA 98 (395)
T ss_pred eecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcC-cchhhCccHHHHHHHHHHc-CCeEEEECCCCCCcCH---HHHHHH
Confidence 4456666655544333345677888544 44443 22222 233344444443 3211 1 1 1224432 112224
Q ss_pred HHHHHhhCCCCCEEEEecCCchhH
Q 024252 111 PEIWKGTGGKIDALVSGIGTGGTV 134 (270)
Q Consensus 111 ~EI~~ql~~~~d~iv~~vG~Gg~~ 134 (270)
.+++++. ++| +|+++|+|..+
T Consensus 99 ~~~~r~~--~~D-~IiavGGGS~i 119 (395)
T PRK15454 99 VAQLRES--GCD-GVIAFGGGSVL 119 (395)
T ss_pred HHHHHhc--CcC-EEEEeCChHHH
Confidence 4445543 477 56788888765
No 398
>PRK06720 hypothetical protein; Provisional
Probab=45.93 E-value=1.5e+02 Score=23.38 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEe
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITM 45 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~ 45 (270)
|...+|+..++--|.++|......|.+++++-
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEE
Confidence 45567777788888888888877787655543
No 399
>PRK05717 oxidoreductase; Validated
Probab=45.89 E-value=1.7e+02 Score=24.15 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=35.2
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
|++.+|+-.+|.-|.++|......|.+++++-.. . .......+..+.+++.+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~-~-~~~~~~~~~~~~~~~~~~ 62 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD-R-ERGSKVAKALGENAWFIA 62 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC-H-HHHHHHHHHcCCceEEEE
Confidence 4567889999999999999999999877665332 1 111223344565555444
No 400
>PLN02253 xanthoxin dehydrogenase
Probab=45.83 E-value=1.4e+02 Score=25.20 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=27.7
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
|.+.+|+..+|.-|.++|......|.+++++-.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 456799999999999999999999988776644
No 401
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=45.78 E-value=29 Score=23.68 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=24.0
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
...||+...|-+..+ |..||.+|+|+++=++.
T Consensus 31 ~~Giv~~~Gg~~SH~-aIlAr~~giP~ivg~~~ 62 (80)
T PF00391_consen 31 VAGIVTEEGGPTSHA-AILARELGIPAIVGVGD 62 (80)
T ss_dssp SSEEEESSSSTTSHH-HHHHHHTT-EEEESTTT
T ss_pred eEEEEEEcCCccchH-HHHHHHcCCCEEEeecc
Confidence 456888877777654 89999999999987653
No 402
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.69 E-value=1.7e+02 Score=23.99 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=27.4
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
.+.+|+..+|.-|.++|......|.++++....
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 457899999999999999999999887765543
No 403
>CHL00194 ycf39 Ycf39; Provisional
Probab=45.66 E-value=90 Score=27.11 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=27.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
.+|+..+|.-|..++-.....|.+++++.+.
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 5788899999999999999999998888765
No 404
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=45.66 E-value=1.7e+02 Score=24.08 Aligned_cols=53 Identities=34% Similarity=0.470 Sum_probs=31.9
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
+.+.+.+|...+|...+|-.|.+++..++.+|.+.+...+ +..+.+.++.+|+
T Consensus 98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~ 150 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAG---SPEKRDFLRELGI 150 (288)
T ss_pred HHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCC
Confidence 3456667765455445677777777777777776444432 2345555566665
No 405
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=45.52 E-value=32 Score=32.23 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 22 SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
|||-.|.++|.++...|-+++++.....- . .-+|.+++.+..
T Consensus 280 SSGkmG~alA~aa~~~GA~VtlI~Gp~~~----~--~p~~v~~i~V~t 321 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTLISGPVDL----A--DPQGVKVIHVES 321 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEEEeCCcCC----C--CCCCceEEEecC
Confidence 89999999999999999999998743211 0 225667777764
No 406
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.35 E-value=1.2e+02 Score=28.15 Aligned_cols=55 Identities=22% Similarity=0.126 Sum_probs=40.2
Q ss_pred CCCCcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCCCC-----CHHHHHHHHHcCCEEEEe
Q 024252 12 RPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASM-----SLERRMVLLAFGAELVLT 67 (270)
Q Consensus 12 ~~g~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~~~-----~~~k~~~~~~~Ga~v~~~ 67 (270)
..|. .|+.-.+||.|.-+|..+.++|. +++++.+... .......++..|.+++.-
T Consensus 271 ~~g~-~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 271 PVGK-RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CCCC-eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 3454 58888899999999999999998 6787765421 234456677788887653
No 407
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=45.28 E-value=1.7e+02 Score=24.03 Aligned_cols=51 Identities=31% Similarity=0.419 Sum_probs=29.1
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcC
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFG 61 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~G 61 (270)
.+.+++|.+.+|...+|..|.+++..++.+|.+.+++.+ +..+.+.++..|
T Consensus 103 ~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~ 153 (293)
T cd05195 103 LARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVG---SEEKREFLRELG 153 (293)
T ss_pred HhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhC
Confidence 355667665555555677777777777777766444322 234444444444
No 408
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=45.15 E-value=1e+02 Score=28.97 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=55.1
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++|+...-|+-|+.+|..++.+|.+++++-+ ++.+.......|+++.. +++ +.+.. +.+.+..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~---dp~~a~~A~~~G~~~~~------lee-------ll~~A-DIVI~at 317 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEI---DPICALQAAMEGYQVVT------LED-------VVETA-DIFVTAT 317 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CchhHHHHHhcCceecc------HHH-------HHhcC-CEEEECC
Confidence 4689999999999999999999997555422 22233233346776431 222 22222 3333322
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCch
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 132 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg 132 (270)
.+ ...+..|.+++++ +..+++-+|.+-
T Consensus 318 -Gt-------~~iI~~e~~~~MK--pGAiLINvGr~d 344 (476)
T PTZ00075 318 -GN-------KDIITLEHMRRMK--NNAIVGNIGHFD 344 (476)
T ss_pred -Cc-------ccccCHHHHhccC--CCcEEEEcCCCc
Confidence 11 2234557777774 788999999985
No 409
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=45.13 E-value=1.1e+02 Score=26.55 Aligned_cols=58 Identities=16% Similarity=0.016 Sum_probs=29.5
Q ss_pred CCCcEEEeeCCcHHHHH----HHHHHHHcCCcEEEEeCCCC-----C-------HHHHHHHHHcCCEEEEeCCC
Q 024252 13 PGESVLIEPTSGNTGIG----LAFMAAAKGYRLIITMPASM-----S-------LERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~a----lA~aa~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~Ga~v~~~~~~ 70 (270)
++...|+....|-+... .-..|+++++|+++|+-.+- + +.-....+.+|...+.+++.
T Consensus 125 ~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~ 198 (293)
T cd02000 125 EDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGN 198 (293)
T ss_pred CCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCC
Confidence 33334444444444332 23446677888776665321 1 11223445667777777653
No 410
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=45.08 E-value=79 Score=28.58 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=30.5
Q ss_pred CCCCCcEEEeeCCcHHHHHHHHHHHHcC-------CcEEEEeCCC
Q 024252 11 IRPGESVLIEPTSGNTGIGLAFMAAAKG-------YRLIITMPAS 48 (270)
Q Consensus 11 l~~g~~~vv~aSsGN~g~alA~aa~~~G-------~~~~iv~p~~ 48 (270)
|+.+...|..-.+|++|.|+|...+..| -++.++..+.
T Consensus 7 ~~~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 7 LRCGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 4555567888899999999999999887 5778887653
No 411
>PRK12414 putative aminotransferase; Provisional
Probab=44.92 E-value=1.4e+02 Score=26.80 Aligned_cols=52 Identities=13% Similarity=-0.101 Sum_probs=30.9
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..++|..+..++..+- +.=.-.|+++.-.-..-...++.+|++++.++-
T Consensus 92 ~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (384)
T PRK12414 92 EVTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKL 143 (384)
T ss_pred cEEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccchHHHHHHcCCEEEEEec
Confidence 3777778888877666542 221123444442333345556778999998874
No 412
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=44.82 E-value=1.7e+02 Score=27.05 Aligned_cols=54 Identities=19% Similarity=0.067 Sum_probs=39.1
Q ss_pred cEEEeeCCcHHHHHHHHHHHH------cCC--cEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAA------KGY--RLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~------~G~--~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
..++..+||..+..+|+.+.. .++ .-.|++|...-......+..+|+++++++-
T Consensus 79 ~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv 140 (438)
T PRK15407 79 RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV 140 (438)
T ss_pred CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 357778888888887776541 133 235777777777778888889999998874
No 413
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=44.81 E-value=89 Score=27.84 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=38.0
Q ss_pred CCCCCCcEEEeeCCc--HHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHH----HHHHcCCEEEEeC
Q 024252 10 LIRPGESVLIEPTSG--NTGIGLAFMAAAKGYRLIITMPASMS--LERRM----VLLAFGAELVLTD 68 (270)
Q Consensus 10 ~l~~g~~~vv~aSsG--N~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~----~~~~~Ga~v~~~~ 68 (270)
.++ |.+ |.-...+ |.++|+..+++++|++++++.|+.-. ...+. ..+..|+++...+
T Consensus 153 ~l~-gl~-ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 153 PLS-EIS-YVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred CcC-CcE-EEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 443 443 4444443 68999999999999999999998542 22221 2345788887765
No 414
>PRK05957 aspartate aminotransferase; Provisional
Probab=44.70 E-value=86 Score=28.20 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=30.8
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
.|+..++++++..++..+- +.-.-.|+++.-........++..|++++.++.+
T Consensus 91 ~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 143 (389)
T PRK05957 91 AIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD 143 (389)
T ss_pred eEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC
Confidence 5787888888876655442 2212234443322222344567899999988753
No 415
>PRK07904 short chain dehydrogenase; Provisional
Probab=44.58 E-value=1.8e+02 Score=24.15 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=34.4
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHc-CCcEEEEeCCCCC--HHHHHHHHHcCC-EEEEe
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMS--LERRMVLLAFGA-ELVLT 67 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~-G~~~~iv~p~~~~--~~k~~~~~~~Ga-~v~~~ 67 (270)
.+.+|+..+|--|.++|....+. |.+++++.....+ ....+.++..|. +++.+
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~ 65 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVI 65 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEE
Confidence 45788889999999999887777 4887777654332 122344555554 55444
No 416
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.56 E-value=1.5e+02 Score=25.42 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=35.4
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+.+.+|.+.+|...+|..|.++...++..|.+.+.+.+ ..+...++.+|+..
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~----~~~~~~~~~~g~~~ 186 (331)
T cd08273 135 AKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS----ERNHAALRELGATP 186 (331)
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC----HHHHHHHHHcCCeE
Confidence 56777776555555688888888888888887544432 44566667777653
No 417
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=44.45 E-value=53 Score=25.65 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=35.7
Q ss_pred EEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 18 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+|.-.+|+.|..++-.....|.+++++++...+ ... ..+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~---~~~--~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSK---AED--SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGG---HHH--CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchh---ccc--ccccccceeee
Confidence 577789999999999999999999999987443 332 55666665553
No 418
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.21 E-value=1.8e+02 Score=23.98 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=44.4
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 86 (270)
|.+.+|+..+|--|.++|......|.+++++.... ..+.+.++..+...+.++-. +.++..+...+..++
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKE 76 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHH
Confidence 35678888999999999999999998876654432 34445555556666666643 333333344444333
No 419
>PRK09291 short chain dehydrogenase; Provisional
Probab=44.13 E-value=96 Score=25.60 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=28.2
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
.+.+|+..+|.-|.+++......|.+++++...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 356899999999999999999999988877654
No 420
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=44.05 E-value=1.8e+02 Score=23.85 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=28.7
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
++.+.+|+..+|+-|.+++......|..++++...
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 45678899999999999999998899977766543
No 421
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=43.93 E-value=60 Score=26.71 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=47.5
Q ss_pred CCchhhhhhchHHHH----HHhhC------CCCCEEEEecC-CchhHHHH----HHHhhhcCCCeEEEEEecCCCccccC
Q 024252 99 PANPKIHYETTGPEI----WKGTG------GKIDALVSGIG-TGGTVTGA----GKYLKEHNPEIKLYGVEPVESAVLSG 163 (270)
Q Consensus 99 ~~~~~~G~~t~~~EI----~~ql~------~~~d~iv~~vG-~Gg~~aGi----~~~~~~~~~~~~vigV~~~~~~~~~~ 163 (270)
..++..||.+.+.++ .+++. ..+|.|++..| +|||-+|+ +..+++.+|...++.+-..++.. .
T Consensus 92 g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~-e- 169 (216)
T PF00091_consen 92 GNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSS-E- 169 (216)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGG-G-
T ss_pred cccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecccccccc-c-
Confidence 334567887654433 33221 34676666655 34455555 45666677776666654333311 0
Q ss_pred CCCCC-cccccCCCCCCccccccccCCcEEEcCHHHHHHHH
Q 024252 164 GKPGP-HKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETA 203 (270)
Q Consensus 164 ~~~~~-~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~ 203 (270)
+.... ..+ ....-..++.|..+.++.+.+.+.+
T Consensus 170 ~~~~~~Na~-------~~l~~l~~~~d~~i~~dN~~l~~~~ 203 (216)
T PF00091_consen 170 GVVEPYNAL-------LSLSELQEYADSVILFDNDALYKIC 203 (216)
T ss_dssp SHHHHHHHH-------HHHHHHHHTSSEEEEEEHHHHHHHH
T ss_pred cccccceeh-------hHHHHHHHhCCEEEEEcHHHHHHHH
Confidence 00000 000 0011124567778888887766644
No 422
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=43.77 E-value=1.5e+02 Score=23.04 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=15.7
Q ss_pred EEeeCC--cHHHHHHHHHHHHcCCcEEEEe
Q 024252 18 LIEPTS--GNTGIGLAFMAAAKGYRLIITM 45 (270)
Q Consensus 18 vv~aSs--GN~g~alA~aa~~~G~~~~iv~ 45 (270)
++..++ ||..-+++-+....++|+++++
T Consensus 62 v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 62 ILMQSSGLGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred EEEeCCcHHHHHHHHHHHHHcCCCCEEEEE
Confidence 444444 4544444444446777777777
No 423
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.66 E-value=1.9e+02 Score=23.97 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=57.6
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHHcCC-EEEEeCCCCChHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL---ERRMVLLAFGA-ELVLTDPARGMKGAV 77 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga-~v~~~~~~~~~~~~~ 77 (270)
+...++.=.++||.+ |.+=.+|. |...|..|+..| .|+.-+..+. .=.+.++.+|- +|.+.-++..
T Consensus 61 vA~m~~~L~~~~g~~-VLEIGtGs-GY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~----- 130 (209)
T COG2518 61 VARMLQLLELKPGDR-VLEIGTGS-GYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS----- 130 (209)
T ss_pred HHHHHHHhCCCCCCe-EEEECCCc-hHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc-----
Confidence 445555667788864 77777763 566677777777 4443332222 12334677787 5655544221
Q ss_pred HHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCC
Q 024252 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 130 (270)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~ 130 (270)
.||---.|||--.. -++-.++=.-+++||. .--.+|+|+|+
T Consensus 131 ----------~G~~~~aPyD~I~V-taaa~~vP~~Ll~QL~-~gGrlv~PvG~ 171 (209)
T COG2518 131 ----------KGWPEEAPYDRIIV-TAAAPEVPEALLDQLK-PGGRLVIPVGS 171 (209)
T ss_pred ----------cCCCCCCCcCEEEE-eeccCCCCHHHHHhcc-cCCEEEEEEcc
Confidence 13322334432111 1233333345689994 34578899984
No 424
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=43.46 E-value=2e+02 Score=24.35 Aligned_cols=53 Identities=28% Similarity=0.342 Sum_probs=33.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+.+.+.+|.+.+|...+|..|.+++..++..|.+.++.. ...+.+.++.+|++
T Consensus 135 ~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~----~~~~~~~~~~~g~~ 187 (325)
T cd08271 135 KKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC----SKRNFEYVKSLGAD 187 (325)
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE----cHHHHHHHHHcCCc
Confidence 345667776655655667788888888888887754432 23455555666654
No 425
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=43.37 E-value=1.7e+02 Score=24.95 Aligned_cols=43 Identities=12% Similarity=-0.058 Sum_probs=30.9
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
.+.+.-.......+|+....||-|+.+|-....+|.+++-+..
T Consensus 27 ~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 27 EMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3444333443334699999999999999999998888776654
No 426
>PRK08339 short chain dehydrogenase; Provisional
Probab=43.25 E-value=1.6e+02 Score=24.64 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=27.7
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
|+..+|+-.+|--|.++|......|.+++++-.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 456789999999999999999999998776644
No 427
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=43.23 E-value=1.2e+02 Score=26.75 Aligned_cols=52 Identities=15% Similarity=-0.031 Sum_probs=30.6
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..++++++..+...+- .+-.-.|+++......-....+.+|++++.++.
T Consensus 86 ~i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 137 (367)
T PRK02731 86 RIILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA 137 (367)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc
Confidence 4666666666655543332 222234555553444445556789999998875
No 428
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=43.11 E-value=59 Score=29.76 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=28.4
Q ss_pred CCCcEEEeeC----------------CcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 13 PGESVLIEPT----------------SGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 13 ~g~~~vv~aS----------------sGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
.|.+.+||+. ||-.|.++|.++...|.+++++...
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 4566788886 8999999999999999888777543
No 429
>PRK07062 short chain dehydrogenase; Provisional
Probab=43.11 E-value=1.9e+02 Score=23.96 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=28.5
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
|...+|+..+|--|.++|......|.+++++.+.
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4567899999999999999999999987766554
No 430
>PLN02494 adenosylhomocysteinase
Probab=43.09 E-value=1.3e+02 Score=28.29 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=57.1
Q ss_pred CCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCcc
Q 024252 12 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY 91 (270)
Q Consensus 12 ~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (270)
-.|. +|+....|+-|+++|..++.+|.+++++ . .++.+.......|.++. + .++ ..+.. +.+
T Consensus 252 LaGK-tVvViGyG~IGr~vA~~aka~Ga~VIV~-e--~dp~r~~eA~~~G~~vv--~----leE-------al~~A-DVV 313 (477)
T PLN02494 252 IAGK-VAVICGYGDVGKGCAAAMKAAGARVIVT-E--IDPICALQALMEGYQVL--T----LED-------VVSEA-DIF 313 (477)
T ss_pred cCCC-EEEEECCCHHHHHHHHHHHHCCCEEEEE-e--CCchhhHHHHhcCCeec--c----HHH-------HHhhC-CEE
Confidence 3454 6999999999999999999999975554 2 23444445566787753 1 222 11222 333
Q ss_pred ccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCch
Q 024252 92 VLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 132 (270)
Q Consensus 92 ~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg 132 (270)
+. -..+ ...+..+.+++++ +..+++-+|..+
T Consensus 314 I~-tTGt-------~~vI~~e~L~~MK--~GAiLiNvGr~~ 344 (477)
T PLN02494 314 VT-TTGN-------KDIIMVDHMRKMK--NNAIVCNIGHFD 344 (477)
T ss_pred EE-CCCC-------ccchHHHHHhcCC--CCCEEEEcCCCC
Confidence 32 1111 2234466777774 688999998854
No 431
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=43.08 E-value=1.9e+02 Score=23.94 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=26.6
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 48 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~ 48 (270)
.+..-.+||-|.++|..-.+.|.+++|--++.
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 46667899999999999999999888775543
No 432
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=43.00 E-value=1e+02 Score=27.79 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHHcCCEEEEeC
Q 024252 25 NTGIGLAFMAAAKGYRLIITMPASM--SLERRMV----LLAFGAELVLTD 68 (270)
Q Consensus 25 N~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~----~~~~Ga~v~~~~ 68 (270)
|-++|+..+++++|++++++.|+.- ++..++. ++..|.++..++
T Consensus 188 ~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 237 (357)
T TIGR03316 188 SVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN 237 (357)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 6678999999999999999999853 3433332 456788887765
No 433
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=43.00 E-value=1.2e+02 Score=21.61 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=26.9
Q ss_pred EeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 19 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 19 v~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
+....|+.|+.++-.-+..+.+++++- .++.+.+.++..|.+++.-+
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid---~d~~~~~~~~~~~~~~i~gd 48 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVID---RDPERVEELREEGVEVIYGD 48 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHTTSEEEES-
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEE---CCcHHHHHHHhccccccccc
Confidence 445567777777777777555655552 23455666666665554433
No 434
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=42.98 E-value=2.1e+02 Score=24.26 Aligned_cols=72 Identities=14% Similarity=0.021 Sum_probs=45.0
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhC-CCCCEEEEe
Q 024252 53 RRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG-GKIDALVSG 127 (270)
Q Consensus 53 k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~-~~~d~iv~~ 127 (270)
-+++++..+.+-+...+...--++.+.|.+++++. ...-+-...||. +-|...+.+|+.++-+ ..+|.=|+|
T Consensus 38 Y~d~i~l~~~k~v~~s~m~~Ei~Ra~~AielA~~G-~~ValVSsGDpg--VYgMA~lv~E~~~~~~~~~v~veVvP 110 (249)
T COG1010 38 YLDLIELRPGKEVIRSGMREEIERAKEAIELAAEG-RDVALVSSGDPG--VYGMAGLVLEAAEEEGWYDVDVEVVP 110 (249)
T ss_pred HHHHHhcCCCCEEEeCCcHhHHHHHHHHHHHHhcC-CeEEEEeCCCcc--HHHhHHHHHHHHHhcCCCCccEEEeC
Confidence 34555555554433333223345667778888775 334444455654 5678889999998764 368888899
No 435
>PLN02583 cinnamoyl-CoA reductase
Probab=42.82 E-value=1.9e+02 Score=24.77 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=29.8
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
++.+.+|+..+|--|..++......|.+++++.+.
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 34567889999999999999999999998887764
No 436
>PRK07060 short chain dehydrogenase; Provisional
Probab=42.69 E-value=1.4e+02 Score=24.39 Aligned_cols=53 Identities=26% Similarity=0.256 Sum_probs=37.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~-~~~Ga~v~~~~~ 69 (270)
+.+.+|+..+|.-|..++......|.+++++.+. ..+.+.+ +..+.+++.++-
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDV 62 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecC
Confidence 4567888888999999999999999986665443 2333333 445777776664
No 437
>PRK12747 short chain dehydrogenase; Provisional
Probab=42.66 E-value=1.6e+02 Score=24.29 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=36.2
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~ 68 (270)
+...+|+..+|--|.++|......|.++++....... ......++..|.++..+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 4567899999999999999999999887765322111 112234455566655443
No 438
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.65 E-value=2e+02 Score=23.91 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=35.6
Q ss_pred CCcEEEeeCC--cHHHHHHHHHHHHcCCcEEEEeC----CCC----CHH----HHHHHHHcCCEEEEeC
Q 024252 14 GESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMP----ASM----SLE----RRMVLLAFGAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p----~~~----~~~----k~~~~~~~Ga~v~~~~ 68 (270)
|.+.+|+-.+ +.-|.++|......|.++++... ... ... ..+.++..|.++..+.
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 74 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSME 74 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEE
Confidence 4556777666 48999999999999998776531 111 111 2234567788887654
No 439
>PRK08251 short chain dehydrogenase; Provisional
Probab=42.65 E-value=1.9e+02 Score=23.68 Aligned_cols=33 Identities=33% Similarity=0.399 Sum_probs=26.6
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
.+.+|+..+|.-|.++|..-.+.|.+++++.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~ 35 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARR 35 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 356888999999999999998899876666443
No 440
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=42.56 E-value=1.4e+02 Score=22.30 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 27 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 27 g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
|..+|-.....|.+.+|+ ...-+.-...++..|-+|+..++ .+.+++....
T Consensus 54 G~~~a~~l~~~gvdvvi~--~~iG~~a~~~l~~~GIkv~~~~~-~~V~e~i~~~ 104 (121)
T COG1433 54 GIRIAELLVDEGVDVVIA--SNIGPNAYNALKAAGIKVYVAPG-GTVEEAIKAF 104 (121)
T ss_pred hHHHHHHHHHcCCCEEEE--CccCHHHHHHHHHcCcEEEecCC-CCHHHHHHHH
Confidence 456788889999997776 33555668889999999999987 4556555433
No 441
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=42.49 E-value=1.4e+02 Score=25.79 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=26.0
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKG-YRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G-~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
|.+.+|...+|-.|.+++..|+.+| .+.+++... ..+.+.++.+|++
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~~g~~ 197 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR---PESIAWVKELGAD 197 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC---hhhHHHHHhcCCc
Confidence 5554444446777777777777777 554444222 2344444556653
No 442
>PRK09242 tropinone reductase; Provisional
Probab=42.14 E-value=2e+02 Score=23.78 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHH-HHHHHHc--CCEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER-RMVLLAF--GAELVLTD 68 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k-~~~~~~~--Ga~v~~~~ 68 (270)
|++.+|+..+|.-|.++|......|.+++++........+ ...++.. +.++..+.
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~ 66 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLA 66 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEE
Confidence 4567888899999999999999999987666543211111 1223333 66776654
No 443
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=41.89 E-value=83 Score=27.86 Aligned_cols=55 Identities=25% Similarity=0.459 Sum_probs=36.3
Q ss_pred EEEeeCCcHHHHHHHHHHHH----cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 024252 17 VLIEPTSGNTGIGLAFMAAA----KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKT 87 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~----~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 87 (270)
-+++.-+=|++-|+|++|.. .|=+.++|+|.+. .+.....|.++.+.+.+++++.
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH----------------~I~d~~af~~av~~A~~~A~~g 138 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDH----------------VIADEEAFLNAVKKAEKAAEEG 138 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcc----------------eeccHHHHHHHHHHHHHHHHcC
Confidence 58888888888888888743 3433566677642 2222123677888888888874
No 444
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=41.87 E-value=1.9e+02 Score=23.60 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=28.2
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM 49 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~ 49 (270)
.|+.-.+|.-|..-+......|-.++|+-|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 588899999999989888899999888877643
No 445
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=41.87 E-value=1.3e+02 Score=21.98 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=28.0
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.+.++.+..-.+...+--.|..+|++.+++.|......-++.++.+|.+++
T Consensus 56 iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 56 IDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp -SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 345566666666666666667777777777777555556666666666543
No 446
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=41.86 E-value=3.1e+02 Score=28.50 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=0.0
Q ss_pred CHHHHHHcCC----CCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE-eCCCCChHH
Q 024252 1 MIADAEEKGL----IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL-TDPARGMKG 75 (270)
Q Consensus 1 ~i~~a~~~g~----l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~-~~~~~~~~~ 75 (270)
+.+.+.+.+. ..+....|+.-.+|-.|.+.|+..++.|++++||=.. ...|..+.. ++....-.+
T Consensus 412 ~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~----------~~~GG~l~~gip~~rl~~e 481 (1006)
T PRK12775 412 VGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEAL----------HVVGGVLQYGIPSFRLPRD 481 (1006)
T ss_pred HHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC----------CCCcceeeccCCccCCCHH
Q ss_pred HHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCc
Q 024252 76 AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTG 131 (270)
Q Consensus 76 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~G 131 (270)
..+...+..++.+-.+..+. ..|......++.++. ..|+||+++|++
T Consensus 482 ~~~~~~~~l~~~Gv~~~~~~-------~vg~~~~~~~l~~~~--~yDaViIATGa~ 528 (1006)
T PRK12775 482 IIDREVQRLVDIGVKIETNK-------VIGKTFTVPQLMNDK--GFDAVFLGVGAG 528 (1006)
T ss_pred HHHHHHHHHHHCCCEEEeCC-------ccCCccCHHHHhhcc--CCCEEEEecCCC
No 447
>PRK07856 short chain dehydrogenase; Provisional
Probab=41.81 E-value=1.8e+02 Score=24.01 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=28.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
|.+.+|+-.+|--|.++|......|.+++++...
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567899999999999999999999987776553
No 448
>PRK04148 hypothetical protein; Provisional
Probab=41.78 E-value=1.6e+02 Score=22.55 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=38.3
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+++-..| +|.++|..-++.|..++.+ +.++..++.++..+.+++..+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDD 66 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECc
Confidence 358888888 8888888888899887776 556667888888888877665
No 449
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=41.62 E-value=2.2e+02 Score=24.25 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=17.2
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcE
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRL 41 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~ 41 (270)
..+.+|.+.+|...++-.|.+++..++..|.+.
T Consensus 162 ~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v 194 (342)
T cd08266 162 ARLRPGETVLVHGAGSGVGSAAIQIAKLFGATV 194 (342)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcCCEE
Confidence 444455444444444555555555555555553
No 450
>PRK06202 hypothetical protein; Provisional
Probab=41.60 E-value=37 Score=28.13 Aligned_cols=38 Identities=13% Similarity=0.335 Sum_probs=28.8
Q ss_pred CCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCC
Q 024252 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 158 (270)
Q Consensus 121 ~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~ 158 (270)
...+=++||+|....-++..++..+++.+++|+++...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 35667888888877777666666677789999998765
No 451
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=41.56 E-value=1.6e+02 Score=24.19 Aligned_cols=53 Identities=26% Similarity=0.302 Sum_probs=36.3
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTD 68 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--~k~~~~~~~Ga~v~~~~ 68 (270)
+.+|+..+|.-|.++|..-.+.|.++++........ .....++..+.+++.+.
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVA 58 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 468888899999999999999998876654332211 22344566777776654
No 452
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.55 E-value=2.2e+02 Score=24.25 Aligned_cols=54 Identities=24% Similarity=0.406 Sum_probs=33.7
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+.+.+.+|.+.+|...+|..|.+++..|+.+ ..+.++.. ..+.+...++.+|++
T Consensus 132 ~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~--~~~~~~~~-~~~~~~~~~~~~g~~ 185 (337)
T cd08275 132 ELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV--PNVTVVGT-ASASKHEALKENGVT 185 (337)
T ss_pred HhhCCCCCCEEEEEcCcchHHHHHHHHHHHc--cCcEEEEe-CCHHHHHHHHHcCCc
Confidence 4566777776666666688888888888877 22233332 234455666667764
No 453
>PLN02263 serine decarboxylase
Probab=41.52 E-value=2.4e+02 Score=26.54 Aligned_cols=55 Identities=13% Similarity=-0.024 Sum_probs=41.3
Q ss_pred cEEEeeCCcHHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 71 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~-G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~ 71 (270)
..++ .|+|.-+--+|..+++- --+.++|+|+.+-..-.+..+.+|.+++.++...
T Consensus 154 ~G~v-tsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~ 209 (470)
T PLN02263 154 WGYI-TNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTLV 209 (470)
T ss_pred eEEE-eCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccCC
Confidence 3455 47778887788777554 3345889999888787888899999999988643
No 454
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=41.49 E-value=1.6e+02 Score=27.47 Aligned_cols=51 Identities=22% Similarity=0.144 Sum_probs=39.2
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC--------------C----HHHHHHHHHcCCEEEE
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--------------S----LERRMVLLAFGAELVL 66 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~--------------~----~~k~~~~~~~Ga~v~~ 66 (270)
+.|+.-.+|-.|.+.|..+++.|.++++|-.... + ...++.++.+|.+++.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3589999999999999999999999998854321 1 1234567888988764
No 455
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=41.44 E-value=1.9e+02 Score=23.45 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=36.0
Q ss_pred EEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCC
Q 024252 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 18 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--~k~~~~~~~Ga~v~~~~~ 69 (270)
+|+..+|.-|.++|....+.|.+++++.....+. .....++..+.++..+..
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 55 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQF 55 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEc
Confidence 6788899999999999999999877665432221 223345566777766553
No 456
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=41.34 E-value=2.8e+02 Score=25.28 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=46.6
Q ss_pred EEEeeCCcHHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHhCCCccccC
Q 024252 17 VLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-GMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~-~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.|+..++++.+..++..+-. -| + .|+++.-.-..-...++.+|++++.++-+. +++ .+...+..++....+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pg-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~ 218 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPG-D-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILT 218 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCC-C-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEEC
Confidence 58888888888877766532 23 2 344444345566778889999999886422 222 122222222333455665
Q ss_pred -CCCCCCc
Q 024252 95 -QFENPAN 101 (270)
Q Consensus 95 -~~~~~~~ 101 (270)
..+||..
T Consensus 219 p~p~NPTG 226 (431)
T PRK15481 219 PRAHNPTG 226 (431)
T ss_pred CCCCCCCC
Confidence 4456653
No 457
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=41.30 E-value=2.1e+02 Score=23.78 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=34.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHcCCEEEEe
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAELVLT 67 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~-~~~Ga~v~~~ 67 (270)
|...+|+..+|--|.++|......|.+++++-.. ..+.+.+ +.++.++..+
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~ 57 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVV 57 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEE
Confidence 4567899999999999999999999987665432 3334333 3345544444
No 458
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.25 E-value=1.6e+02 Score=25.52 Aligned_cols=62 Identities=10% Similarity=0.107 Sum_probs=39.3
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEe---CCCCC-HH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITM---PASMS-LE----RRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKT 87 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~---p~~~~-~~----k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 87 (270)
.+++... +..|.++.+|++.+-+. |+..+ +. -++.++..|..+++++.... . +.++.++++.
T Consensus 179 ~~v~~H~-----af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~--~--~~~~~ia~~~ 248 (287)
T cd01137 179 KLVTSEG-----AFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVN--D--RLMKQVAKET 248 (287)
T ss_pred EEEEecc-----cHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCC--h--HHHHHHHHHh
Confidence 4555543 68899999999977554 23222 22 24467889999999986422 2 3345555554
No 459
>PHA02542 41 41 helicase; Provisional
Probab=41.18 E-value=3.1e+02 Score=25.77 Aligned_cols=39 Identities=13% Similarity=-0.009 Sum_probs=24.0
Q ss_pred CCCCCCCcEEEeeCC--cHHHHHH--HHHHHHcCCcEEEEeCC
Q 024252 9 GLIRPGESVLIEPTS--GNTGIGL--AFMAAAKGYRLIITMPA 47 (270)
Q Consensus 9 g~l~~g~~~vv~aSs--GN~g~al--A~aa~~~G~~~~iv~p~ 47 (270)
|.+.+|.-.|+.+.. |=+..++ |..+.+.|.++.+|--+
T Consensus 185 gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLE 227 (473)
T PHA02542 185 GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISME 227 (473)
T ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 677888766666633 5555554 44444668777666444
No 460
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=40.91 E-value=1.7e+02 Score=26.32 Aligned_cols=83 Identities=14% Similarity=0.023 Sum_probs=42.1
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH-HhCCCccccCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIR-DKTPNSYVLQQ 95 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 95 (270)
.|+..+++..+..++..+- ..-.-.|+++.-.-..-....+.+|++++.++...++.-..+...+.. .......++..
T Consensus 105 ~I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 183 (380)
T PLN03026 105 NILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTS 183 (380)
T ss_pred hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeC
Confidence 4776666777776665442 221123444443334444556789999998875333221122222222 22335566654
Q ss_pred CCCCC
Q 024252 96 FENPA 100 (270)
Q Consensus 96 ~~~~~ 100 (270)
-+||.
T Consensus 184 P~NPT 188 (380)
T PLN03026 184 PNNPD 188 (380)
T ss_pred CCCCC
Confidence 44554
No 461
>PRK04328 hypothetical protein; Provisional
Probab=40.83 E-value=1.2e+02 Score=25.59 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=40.5
Q ss_pred cCCCCCCCcEEEeeCCcH----HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 8 KGLIRPGESVLIEPTSGN----TGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN----~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
.|-+.+|...+|+...|. .+..+++.+.+.|-+|..+.-+..+..-++.++.+|-+
T Consensus 17 ~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d 76 (249)
T PRK04328 17 YGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWD 76 (249)
T ss_pred cCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCC
Confidence 455788888888886554 55555666667798888887766666677788888874
No 462
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=40.72 E-value=1.5e+02 Score=27.54 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=38.5
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---------C---------HHHHHHHHHcCCEEEE
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---------S---------LERRMVLLAFGAELVL 66 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---------~---------~~k~~~~~~~Ga~v~~ 66 (270)
+.|+.-.+|-.|.+.|..+++.|.+++++-.... + ...++.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 4699999999999999999999999888743321 1 1245667788888764
No 463
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=40.66 E-value=1.2e+02 Score=23.51 Aligned_cols=45 Identities=29% Similarity=0.274 Sum_probs=34.0
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+|---.-|+.|..+|.-..+.|++++++ +..+.+.+.+...|+++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~---d~~~~~~~~~~~~g~~~ 47 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVY---DRSPEKAEALAEAGAEV 47 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEE---ESSHHHHHHHHHTTEEE
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEee---ccchhhhhhhHHhhhhh
Confidence 3555567999999999999999999888 34578888888777433
No 464
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=40.58 E-value=1.5e+02 Score=25.79 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=37.4
Q ss_pred EEEeeCCcHHHHHHHHHHHHc-------------CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAK-------------GYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~-------------G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.++..++|..+..++..+.+. +-+.+|+++..........++.+|++++.++.
T Consensus 59 ~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~ 124 (345)
T cd06450 59 DGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPV 124 (345)
T ss_pred CEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeee
Confidence 366778888888887776432 12457777776655666667778999998874
No 465
>PRK13984 putative oxidoreductase; Provisional
Probab=40.34 E-value=1.3e+02 Score=29.08 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=39.1
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC--------------C----HHHHHHHHHcCCEEEE
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--------------S----LERRMVLLAFGAELVL 66 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~--------------~----~~k~~~~~~~Ga~v~~ 66 (270)
++. .|+.-.+|-.|.+.|...++.|++++|+=.... + ....+.++.+|.+++.
T Consensus 282 ~~~-~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 282 KNK-KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CCC-eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 344 577777999999999999999999998843321 1 2235677889988764
No 466
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=40.19 E-value=1.1e+02 Score=27.44 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=37.2
Q ss_pred CCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 10 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 10 ~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.+++|...+|...+|--|.+.--.|+.+|+ +.++.- .+..+++.++.+||+-+
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~--~s~e~~~l~k~lGAd~v 206 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTA--CSKEKLELVKKLGADEV 206 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEE--cccchHHHHHHcCCcEe
Confidence 677787778888888888888888888883 222222 24467888888887543
No 467
>PRK05852 acyl-CoA synthetase; Validated
Probab=40.17 E-value=1.8e+02 Score=27.19 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=50.1
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
..+.+..+++|....+....+-.-....+++.+.|..++.+-|...+......++..++++++++.
T Consensus 58 ~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 123 (534)
T PRK05852 58 GQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDA 123 (534)
T ss_pred HHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcC
Confidence 445555678887656666667777778888899999888877766666677788999999998764
No 468
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=40.12 E-value=2.1e+02 Score=23.58 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=27.2
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
.+.+|+.++|--|.++|......|.+++++.+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 45789999999999999999999998776644
No 469
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=40.04 E-value=1.3e+02 Score=29.94 Aligned_cols=54 Identities=24% Similarity=0.156 Sum_probs=39.9
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCc-EEEEeCCCC-----CHHHHHHHHHcCCEEEEe
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYR-LIITMPASM-----SLERRMVLLAFGAELVLT 67 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~-~~iv~p~~~-----~~~k~~~~~~~Ga~v~~~ 67 (270)
.|. .|+.-.+||.|.-+|..+.++|.+ ++++.+... ....+..++..|.+++..
T Consensus 569 ~gk-~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~ 628 (752)
T PRK12778 569 FGK-KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTL 628 (752)
T ss_pred CCC-cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 444 588999999999999999999998 888876431 223344567778877653
No 470
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=39.90 E-value=46 Score=21.81 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=22.3
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEeCCCC
Q 024252 22 TSGNTGIGLAFMAAAKGYRLIITMPASM 49 (270)
Q Consensus 22 SsGN~g~alA~aa~~~G~~~~iv~p~~~ 49 (270)
.+|=.|.+.|+..++.|.+++|+=..+.
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 4688899999999999999888865543
No 471
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=39.87 E-value=1.7e+02 Score=25.22 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=21.4
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
+++...+|-.|+|+|++....|.+-+.++.+
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3444555888999999888999874444433
No 472
>PRK05872 short chain dehydrogenase; Provisional
Probab=39.70 E-value=2.2e+02 Score=24.36 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=27.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
|.+.+|+..+|.-|.++|......|.+++++-.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r 41 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDL 41 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 456789999999999999999999987666543
No 473
>PRK07326 short chain dehydrogenase; Provisional
Probab=39.54 E-value=2e+02 Score=23.21 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=27.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
+...+|+..+|.-|.+++......|.+++++..
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 345788889999999999999888998777654
No 474
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=39.51 E-value=2e+02 Score=26.26 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=24.3
Q ss_pred EEEeeCCcHHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~-~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.++..+||..+.=.|.++-. -|=++.++....-...-.+..+.||++++.++.
T Consensus 58 ~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~ 111 (383)
T COG0075 58 VVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV 111 (383)
T ss_pred EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC
Confidence 34455555555443333322 133444444443333444455556666655543
No 475
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=39.47 E-value=1.6e+02 Score=27.27 Aligned_cols=51 Identities=14% Similarity=0.037 Sum_probs=35.1
Q ss_pred EeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 19 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 19 v~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+..|+||+-----..--..+-.-+|++.+.+-+.-++.++.+|++++.|+-
T Consensus 127 iiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~m 177 (472)
T KOG0634|consen 127 IIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKM 177 (472)
T ss_pred EEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEeccc
Confidence 445555543322222334455567888888888889999999999999975
No 476
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=39.46 E-value=1.6e+02 Score=22.04 Aligned_cols=52 Identities=27% Similarity=0.320 Sum_probs=31.8
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEe-CCCCCHHH----HHHHHHcCCEEEEeC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITM-PASMSLER----RMVLLAFGAELVLTD 68 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~-p~~~~~~k----~~~~~~~Ga~v~~~~ 68 (270)
.+|+..+|..|.+++......|...++++ +...+... +..++..|.++..+.
T Consensus 3 ~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (180)
T smart00822 3 YLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVA 59 (180)
T ss_pred EEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEE
Confidence 47788889999999998888887544433 32222111 244455566665544
No 477
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.37 E-value=2.4e+02 Score=23.87 Aligned_cols=77 Identities=23% Similarity=0.188 Sum_probs=41.7
Q ss_pred cCCCCCCCcEEEeeCC--cHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHcCCE-EEEeCCCCChHHHHHHHHHH
Q 024252 8 KGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAE-LVLTDPARGMKGAVQKAEEI 83 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~-~~~Ga~-v~~~~~~~~~~~~~~~a~~~ 83 (270)
.|+++ |+..+|+..+ +--|+++|....+.|.++++.-.......+++.+ +.+|.. .+.++- .+.++..+...++
T Consensus 5 ~~~~~-~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl-~~~~~v~~~~~~~ 82 (272)
T PRK08159 5 SGLMA-GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDV-TDEASIDAVFETL 82 (272)
T ss_pred ccccc-CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCC-CCHHHHHHHHHHH
Confidence 34443 3456777664 6799999999999999876653321123344444 344542 233443 2334444444444
Q ss_pred HHh
Q 024252 84 RDK 86 (270)
Q Consensus 84 ~~~ 86 (270)
.++
T Consensus 83 ~~~ 85 (272)
T PRK08159 83 EKK 85 (272)
T ss_pred HHh
Confidence 443
No 478
>PRK08114 cystathionine beta-lyase; Provisional
Probab=39.21 E-value=2e+02 Score=26.28 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=35.3
Q ss_pred CCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHH----HHHHHcCCEEEEeCCC
Q 024252 11 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR----MVLLAFGAELVLTDPA 70 (270)
Q Consensus 11 l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~----~~~~~~Ga~v~~~~~~ 70 (270)
|+.|.. .+..+||-.+..++..+- +.-.-.|+++...-.... +.++.+|.+|.+++..
T Consensus 74 LEg~~~-a~~~~SGmaAi~~~~~~l-l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~ 135 (395)
T PRK08114 74 LEGGAG-CALYPCGAAAVANAILAF-VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPL 135 (395)
T ss_pred HhCCCe-EEEEhHHHHHHHHHHHHH-cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 343444 455666999888777653 333345666654432222 2357799999999863
No 479
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.15 E-value=2.5e+02 Score=24.90 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=19.2
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
.+|+..|---|.++|.-|++-|-+++++.+.
T Consensus 36 i~itggS~glgl~la~e~~~~ga~Vti~ar~ 66 (331)
T KOG1210|consen 36 ILITGGSSGLGLALALECKREGADVTITARS 66 (331)
T ss_pred EEEecCcchhhHHHHHHHHHccCceEEEecc
Confidence 3444444455566666677777777776554
No 480
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=38.90 E-value=1.6e+02 Score=26.51 Aligned_cols=90 Identities=18% Similarity=0.149 Sum_probs=42.2
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHcCC-EEEEeCCCCChH-HHHHHHHHHHHhCCCcc-ccCCC-CCCCchhhhhhchHHHH
Q 024252 38 GYRLIITMPASMSLERRMVLLAFGA-ELVLTDPARGMK-GAVQKAEEIRDKTPNSY-VLQQF-ENPANPKIHYETTGPEI 113 (270)
Q Consensus 38 G~~~~iv~p~~~~~~k~~~~~~~Ga-~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~~G~~t~~~EI 113 (270)
.+|..|+...+.-..--..++.+|. ++.++.+..-.+ ...+...+..++.+-.+ ..+.. .||.. . ...++
T Consensus 4 ~~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~--~----~v~~~ 77 (377)
T cd08176 4 YLPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI--T----NVKDG 77 (377)
T ss_pred cCCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH--H----HHHHH
Confidence 3566666665544444456677785 566665422122 23444444444432112 11111 13332 1 12334
Q ss_pred HHhhC-CCCCEEEEecCCchhH
Q 024252 114 WKGTG-GKIDALVSGIGTGGTV 134 (270)
Q Consensus 114 ~~ql~-~~~d~iv~~vG~Gg~~ 134 (270)
.+++. .++| +|+++|||..+
T Consensus 78 ~~~~~~~~~D-~IIavGGGS~i 98 (377)
T cd08176 78 LAVFKKEGCD-FIISIGGGSPH 98 (377)
T ss_pred HHHHHhcCCC-EEEEeCCcHHH
Confidence 44432 2477 55778887663
No 481
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=38.69 E-value=2.2e+02 Score=23.30 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=28.5
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
+.+.+|+..+|.-|.++|....+.|.+++++...
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 3567888899999999999999999988877654
No 482
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=38.69 E-value=47 Score=29.19 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=37.6
Q ss_pred CCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 22 SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
.-||.|.+++.---+.|.+++|| +....|.+.++..|++|.-.+
T Consensus 42 GLG~MG~~M~~nLik~G~kVtV~---dr~~~k~~~f~~~Ga~v~~sP 85 (327)
T KOG0409|consen 42 GLGNMGSAMVSNLIKAGYKVTVY---DRTKDKCKEFQEAGARVANSP 85 (327)
T ss_pred eeccchHHHHHHHHHcCCEEEEE---eCcHHHHHHHHHhchhhhCCH
Confidence 45999999999999999999999 466788999999999876544
No 483
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=38.65 E-value=2.1e+02 Score=23.19 Aligned_cols=130 Identities=19% Similarity=0.106 Sum_probs=73.4
Q ss_pred HHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----C---CCCCCcccccCCCCCCcc--ccc
Q 024252 114 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----G---GKPGPHKIQGIGAGFIPG--VLD 184 (270)
Q Consensus 114 ~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~---~~~~~~~~~gl~~~~~~~--~~~ 184 (270)
+..|...++-++.-+|.|+...++=.+ ...|.-|+++++-.....-. . +...-..++|-++...+. ..+
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 345656677788888888877776554 55799999999865442110 0 111112222322211111 223
Q ss_pred cccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCC
Q 024252 185 VNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPENAGKLIVVVFPSFGER 249 (270)
Q Consensus 185 ~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~ 249 (270)
.-+++.. .+.+++++++-...+.-|-++-- .+=-.++.+++..++.... .++-+.-+.+.+
T Consensus 105 aiFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~--ei~~v~is~~~~ 166 (187)
T COG2242 105 AIFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR--EIVQVQISRGKP 166 (187)
T ss_pred EEEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc--eEEEEEeeccee
Confidence 3345555 78888999988887776665544 4555555555555543222 566555455544
No 484
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=38.56 E-value=2.8e+02 Score=24.47 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=32.8
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYR-LIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~-~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
.|+..++++.+..++..+- .+-. -.|+++.-.-..-...++.+|++++.++-.
T Consensus 76 ~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~ 129 (351)
T PRK01688 76 QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL 129 (351)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecC
Confidence 4777777788777766542 2221 344444433344456678899999988753
No 485
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=38.55 E-value=1.4e+02 Score=26.97 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=29.6
Q ss_pred CCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC
Q 024252 12 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 48 (270)
Q Consensus 12 ~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~ 48 (270)
.++. .++.-.+|..|.-+|...+..|.+++++.+..
T Consensus 142 ~~~~-~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 142 QPER-SVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred hcCC-eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3444 47888899999999999999999999887653
No 486
>PRK06125 short chain dehydrogenase; Provisional
Probab=38.50 E-value=2e+02 Score=23.78 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=27.1
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
|.+.+|+..+|.-|+++|......|.+++++-.
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r 39 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGCHLHLVAR 39 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 456788899999999999999999997666544
No 487
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=38.44 E-value=1.4e+02 Score=26.29 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=31.9
Q ss_pred EEEeeCCcHHHHHHHHHHHHcC--CcEEEEeCCCCCHHH----HHHHHHcCCEEEEeCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKG--YRLIITMPASMSLER----RMVLLAFGAELVLTDPA 70 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G--~~~~iv~p~~~~~~k----~~~~~~~Ga~v~~~~~~ 70 (270)
.|+..+++..+..++..+-..+ -.-.|+++....... ....+.+|++++.++.+
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 122 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD 122 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC
Confidence 5777778888877666554332 223455555333332 22345789999988753
No 488
>PRK05650 short chain dehydrogenase; Provisional
Probab=38.39 E-value=2.4e+02 Score=23.58 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=36.0
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+.
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQR 55 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 5788899999999999999999987776544221 112334556677776554
No 489
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=38.35 E-value=2.3e+02 Score=23.56 Aligned_cols=72 Identities=19% Similarity=0.115 Sum_probs=39.4
Q ss_pred CCcEEEeeCC--cHHHHHHHHHHHHcCCcEEEEeCC-C--CCHHHHHHHHHcCCEEEE--eCCCCChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPA-S--MSLERRMVLLAFGAELVL--TDPARGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~-~--~~~~k~~~~~~~Ga~v~~--~~~~~~~~~~~~~a~~~~~~ 86 (270)
|+..+|+..+ +--|+++|....+.|.++++.... . ....+++.++..+.++.. ++-. +.++..+...+..++
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~v~~~~~~~~~~ 84 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQ-DDAQIEETFETIKQK 84 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcC-CHHHHHHHHHHHHHH
Confidence 4556777754 578888998888999987665322 1 123344555544444433 3332 333333344444443
No 490
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=38.14 E-value=49 Score=21.12 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=22.1
Q ss_pred eCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 21 PTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 21 aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
.+..+++..++..++..|+|+.++.-
T Consensus 7 G~C~~~a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 7 GTCGEFAALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eeeHHHHHHHHHHHHHCCCCeEEEee
Confidence 45678889999999999999998854
No 491
>PLN02306 hydroxypyruvate reductase
Probab=38.12 E-value=1.8e+02 Score=26.43 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=66.8
Q ss_pred cEEEeeCCcHHHHHHHHHHH-HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHhCCCcccc
Q 024252 16 SVLIEPTSGNTGIGLAFMAA-AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-GMKGAVQKAEEIRDKTPNSYVL 93 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~-~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~ 93 (270)
++|-.-..|+-|+.+|-.++ -+|++++.+=|. .+.........+|..+....... .+. ......++.++. +...+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~s-DiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY-QSTRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREA-DVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCC-Cchhhhhhhhhhccccccccccccccc-ccCCHHHHHhhC-CEEEE
Confidence 46888899999999999974 899988776543 22222222334443322111100 000 000122333333 33333
Q ss_pred CCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhH--HHHHHHhhh
Q 024252 94 QQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV--TGAGKYLKE 143 (270)
Q Consensus 94 ~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~--aGi~~~~~~ 143 (270)
+- |.+ ..-+.-+..|.+++|+ ++.+++-+|-|+++ ..+..+++.
T Consensus 243 h~---Plt-~~T~~lin~~~l~~MK--~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 243 HP---VLD-KTTYHLINKERLALMK--KEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred eC---CCC-hhhhhhcCHHHHHhCC--CCeEEEECCCccccCHHHHHHHHHh
Confidence 22 222 2335667778889984 79999999999986 455566654
No 492
>PRK14012 cysteine desulfurase; Provisional
Probab=38.08 E-value=1.6e+02 Score=26.53 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=32.2
Q ss_pred EEEeeCCcHHHHHHHHHHHH---cCCcEEEEeCCCCCHHH---HHHHHHcCCEEEEeCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAA---KGYRLIITMPASMSLER---RMVLLAFGAELVLTDPA 70 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~---~G~~~~iv~p~~~~~~k---~~~~~~~Ga~v~~~~~~ 70 (270)
.++..++|..+..++..+-. .+-.-.|+++....... ...++..|++++.++.+
T Consensus 68 ~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~ 127 (404)
T PRK14012 68 EIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQ 127 (404)
T ss_pred eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccC
Confidence 47777888888777765432 23223455555444333 23345579999988753
No 493
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=38.00 E-value=2e+02 Score=23.85 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=25.9
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
+.+|+.++|.-|+++|......|.++++.-+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 3588899999999999999999998666543
No 494
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=37.99 E-value=1.4e+02 Score=24.71 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=28.2
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 47 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~ 47 (270)
..+|+....||-|+.+|......|.+.+.+...
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 457999999999999999999998887777654
No 495
>PRK06101 short chain dehydrogenase; Provisional
Probab=37.98 E-value=2.2e+02 Score=23.32 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=33.3
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
..+|+..+|.-|.++|..-...|.+++++.+. ..+++.+...+.++.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~ 49 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIF 49 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCe
Confidence 46889999999999999998899987776443 445555544443343
No 496
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=37.77 E-value=2.3e+02 Score=23.32 Aligned_cols=139 Identities=19% Similarity=0.172 Sum_probs=69.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---------------C-----HHHHHHHHHcC--CEEEEeCCCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---------------S-----LERRMVLLAFG--AELVLTDPAR 71 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---------------~-----~~k~~~~~~~G--a~v~~~~~~~ 71 (270)
+...|+...+......++-.+...++|.+.+..... + ..-.+.+...| -+|.++....
T Consensus 66 ~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 145 (298)
T cd06268 66 GVDAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDY 145 (298)
T ss_pred CceEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhcCCCEEEEEEcCC
Confidence 355566655555556777888889988765532210 0 01123344444 5666665433
Q ss_pred ChH-HHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEE
Q 024252 72 GMK-GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKL 150 (270)
Q Consensus 72 ~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~v 150 (270)
.+. +..+...+..++. +.-.+.....+.. ..-+.....+|.+ ..||.|++. +.+....++.+.+++.+.++++
T Consensus 146 ~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~-~~~~~~~~~~l~~---~~~~~vi~~-~~~~~~~~~~~~~~~~g~~~~~ 219 (298)
T cd06268 146 AYGRGLAAAFREALKKL-GGEVVAEETYPPG-ATDFSPLIAKLKA---AGPDAVFLA-GYGGDAALFLKQAREAGLKVPI 219 (298)
T ss_pred chhHHHHHHHHHHHHHc-CCEEEEEeccCCC-CccHHHHHHHHHh---cCCCEEEEc-cccchHHHHHHHHHHcCCCCcE
Confidence 332 2233333334443 2111111000000 0112222223322 347877765 4557788899999987777888
Q ss_pred EEEecCCC
Q 024252 151 YGVEPVES 158 (270)
Q Consensus 151 igV~~~~~ 158 (270)
++......
T Consensus 220 ~~~~~~~~ 227 (298)
T cd06268 220 VGGDGAAA 227 (298)
T ss_pred EecCccCC
Confidence 77764443
No 497
>PRK06108 aspartate aminotransferase; Provisional
Probab=37.63 E-value=2.2e+02 Score=25.25 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=32.7
Q ss_pred EEEeeCCcHHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~-~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.|+..++|.++..++..+-. -| + .|+++.-.-..-...++.+|++++.++.
T Consensus 86 ~i~~t~g~~~al~~~~~~l~~~g-d-~vl~~~p~y~~~~~~~~~~g~~~~~v~~ 137 (382)
T PRK06108 86 RIAVTSSGVQALMLAAQALVGPG-D-EVVAVTPLWPNLVAAPKILGARVVCVPL 137 (382)
T ss_pred eEEEeCChHHHHHHHHHHhcCCC-C-EEEEeCCCccchHHHHHHCCCEEEEeeC
Confidence 57778888888877766532 23 2 3444432333445667889999998864
No 498
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.63 E-value=2.2e+02 Score=23.06 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=35.9
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH--HHHHHHHcCCEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE--RRMVLLAFGAELVLTDP 69 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~--k~~~~~~~Ga~v~~~~~ 69 (270)
.+.+|+..+|.-|..+|......|.++++++..+.... ....++..+.++..+..
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKA 62 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45688889999999999988888998776634322221 12334445666665543
No 499
>PRK05967 cystathionine beta-lyase; Provisional
Probab=37.57 E-value=2.2e+02 Score=26.00 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=31.7
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHH----HHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR----MVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~----~~~~~~Ga~v~~~~~ 69 (270)
+...+++ +||-.+..++..+- +.=.-.|+++...-.... ..++.+|.++.+++.
T Consensus 79 ~~~~v~~-sSG~aAi~~~l~al-l~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~ 136 (395)
T PRK05967 79 SAGTILV-PSGLAAVTVPFLGF-LSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDP 136 (395)
T ss_pred CCCEEEE-CcHHHHHHHHHHHh-cCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCC
Confidence 3344444 44887777666553 333334555543333322 356889999999975
No 500
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.55 E-value=1.6e+02 Score=27.25 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=42.9
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccc
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE----RRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV 92 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~----k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (270)
..+..+||..+...+..+- +.-.-.|+++...-.. -...++.+|+++++++.. +.++ . .+..+++....|
T Consensus 81 ~al~~~sG~~Ai~~al~~l-l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-d~e~-l---~~ai~~~tklV~ 154 (431)
T PRK08248 81 GALAVSSGQAAITYSILNI-ASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-DPEN-F---EAAITDKTKALF 154 (431)
T ss_pred cEEEECCHHHHHHHHHHHH-hCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC-CHHH-H---HHhcCCCCeEEE
Confidence 4677888988888777653 2222245555432211 223467899999999863 2222 2 222222234556
Q ss_pred cCCCCCCC
Q 024252 93 LQQFENPA 100 (270)
Q Consensus 93 ~~~~~~~~ 100 (270)
+....||.
T Consensus 155 l~sp~NPt 162 (431)
T PRK08248 155 AETIGNPK 162 (431)
T ss_pred EECCCCCC
Confidence 65445554
Done!