RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024252
(270 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 531 bits (1371), Expect = 0.0
Identities = 218/269 (81%), Positives = 248/269 (92%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAF
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G ELVLTDPA+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGK
Sbjct: 113 GVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGK 172
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID VSGIGTGGT+TGAGKYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 173 IDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VL+V+L+DE VQ+SS+E+I+ A+ LALKEGLLVGISSGAA AAAI++A+RPENAGKL V
Sbjct: 233 SVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFV 292
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
+FPSFGERYLS+VLF++ +KEAE+M FE
Sbjct: 293 AIFPSFGERYLSTVLFDATRKEAEAMTFE 321
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 528 bits (1363), Expect = 0.0
Identities = 139/266 (52%), Positives = 187/266 (70%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
+ AE++G + PG+S+++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L F
Sbjct: 58 IYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIF 117
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAE++LT A GMKGAV A++I PN+ + QF N IH ETTGPEIW+ T
Sbjct: 118 GAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHN 177
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D ++G+GTGGT+TG + LK+ ++ VEP ES VLSGGKPGPHKIQGIG GF+P
Sbjct: 178 VDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVP 237
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VLD +L+DE + ++ ++AIETA L +G+ G S GA AA++IA+RPE GK IV
Sbjct: 238 DVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIV 297
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
V PSFGERYLS+ L+ SV+ E S+
Sbjct: 298 TVIPSFGERYLSTTLYRSVRDEVSSL 323
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 531 bits (1370), Expect = 0.0
Identities = 199/269 (73%), Positives = 236/269 (87%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ DAE+KG I PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AF
Sbjct: 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAF 220
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPA+GM GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK
Sbjct: 221 GAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGK 280
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V+GIGTGGT+TG G+++KE NP+ ++ GVEP ES +LSGGKPGPHKIQGIGAGFIP
Sbjct: 281 VDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIP 340
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
LD ++DE + ISSEEAIETAK LALKEGL+VGISSGAA AAAI++AKRPENAGKLI
Sbjct: 341 KNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIA 400
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
VVFPSFGERYLS+ LF+S+++E E M E
Sbjct: 401 VVFPSFGERYLSTPLFQSIREEVEKMQPE 429
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 512 bits (1320), Expect = 0.0
Identities = 154/259 (59%), Positives = 197/259 (76%), Gaps = 1/259 (0%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ AE+ GLI+P ++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+
Sbjct: 54 MLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAY 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LT A GM GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK
Sbjct: 113 GAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGK 172
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D +V+G+GTGGT+TG + +KE P + VEP S VLSGG+ GPH IQGIGAGF+P
Sbjct: 173 VDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VLD +L+DE + + +E+A+ A+ LA +EGLLVGISSGAAT AA+Q+A+RPENAGKLIV
Sbjct: 233 PVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIV 292
Query: 241 VVFPSFGERYLSSVLFESV 259
VV P FGERYLS+ LF V
Sbjct: 293 VVLPDFGERYLSTPLFADV 311
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 497 bits (1281), Expect = e-180
Identities = 120/267 (44%), Positives = 174/267 (65%), Gaps = 4/267 (1%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
++ A + G ++PG +IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AF
Sbjct: 65 IVYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAF 123
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGG 119
GAEL+LT+ +GM GA+++ ++ + P Y QF NP N H+ T EIW+ T G
Sbjct: 124 GAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDG 182
Query: 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
++D +VS +GT GTV G + LKE IK+ VEP ESAVL G GPH IQGIGAGFI
Sbjct: 183 EVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFI 242
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
P + +DE + I +++A + A+ + +G++ G+SSGAA A ++ A++PEN GK I
Sbjct: 243 PDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTI 302
Query: 240 VVVFPSFGERYLSSVLFESVKKEAESM 266
V++ PS GERYLS+ L++ +K E +
Sbjct: 303 VIIVPSCGERYLSTDLYK-IKDEGTKI 328
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 495 bits (1278), Expect = e-180
Identities = 146/268 (54%), Positives = 194/268 (72%), Gaps = 9/268 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ AE+ G + G +++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L
Sbjct: 49 MVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGL 107
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGG 119
G LVLT+ A+GMKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T G
Sbjct: 108 GVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDG 167
Query: 120 KIDALVSGIGTGGTVTGAGKYLK-EHNPEIKLYGVEPVESAVLSGG------KPGPHKIQ 172
K+D +V+G+GTGG++TG + +K + +I VEPVES V+S KPGPHKIQ
Sbjct: 168 KVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQ 227
Query: 173 GIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232
GIGAGFIP LD++++D + S+ A+ TA+ L +EG+L GISSGAA AAA ++AK P
Sbjct: 228 GIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLP 287
Query: 233 ENAGKLIVVVFPSFGERYLSSVLFESVK 260
E A KLIVV+ PS ERYLS+ LFE ++
Sbjct: 288 EFADKLIVVILPSASERYLSTALFEGIE 315
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 493 bits (1272), Expect = e-179
Identities = 139/258 (53%), Positives = 184/258 (71%), Gaps = 3/258 (1%)
Query: 1 MIADAEEKGLIRPG-ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA 59
MI DAEE+G++RPG V++EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL A
Sbjct: 47 MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKA 106
Query: 60 FGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 119
FGAELVLTDP R M A ++A ++ + +++ QF+NPAN + HYETTGPE+++ G
Sbjct: 107 FGAELVLTDPERRMLAAREEALRLK-EELGAFMPDQFKNPANVRAHYETTGPELYEALEG 165
Query: 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
+IDA V G GTGGT+TG G+YLKE P +K+ VEP S VLSGGK G H QG+G GFI
Sbjct: 166 RIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFI 225
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
P LD++LLD +Q+ E+A A+ LA +EGL +G+SSG AA+Q+A R GK +
Sbjct: 226 PENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGPGKRV 284
Query: 240 VVVFPSFGERYLSSVLFE 257
+ P G +YLS+ L+
Sbjct: 285 ACISPDGGWKYLSTPLYA 302
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 480 bits (1237), Expect = e-173
Identities = 143/257 (55%), Positives = 193/257 (75%), Gaps = 3/257 (1%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE+ G ++PG ++EPTSGNTGIGLA +AAAKGY+ ++ MP +MSLERR +L A+
Sbjct: 52 MIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAY 110
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT A+GM+GA+ KAEE+ + ++ QQF+N ANP+IH TTG EI + G +
Sbjct: 111 GAELVLTPGAQGMRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQ 169
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DA V+G+GTGGT+TGAGK L+E P IK+Y VEP +S VLSGGKPGPHKIQGIGAGF+P
Sbjct: 170 LDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVP 229
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
+LD ++ D + +++EEA A+ A +EG+L GISSGAA AA+++AK GK ++
Sbjct: 230 DILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKGKKVL 288
Query: 241 VVFPSFGERYLSSVLFE 257
+ PS GERYLS+ L++
Sbjct: 289 AIIPSNGERYLSTPLYQ 305
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 468 bits (1208), Expect = e-169
Identities = 134/255 (52%), Positives = 179/255 (70%), Gaps = 6/255 (2%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++GL++ G ++EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL
Sbjct: 54 MILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML 110
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT GMKGAV+KA EI + +++L QFENP N H TTGPEI K +
Sbjct: 111 GAELVLTPGELGMKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQ 169
Query: 121 IDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
IDA V+G+GTGGT++G G+ LK +K+ VEP +S VLSGG+PG H IQGIGAGF+
Sbjct: 170 IDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFV 229
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
P +LD +++DE + + EEA E A+ LA KEGLLVGISSGA AAA+++A++ + +
Sbjct: 230 PKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-V 288
Query: 240 VVVFPSFGERYLSSV 254
V V P ERYLS +
Sbjct: 289 VTVAPDHAERYLSIL 303
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 446 bits (1149), Expect = e-160
Identities = 96/269 (35%), Positives = 147/269 (54%), Gaps = 11/269 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE GL+RPG + ++EPTSGNTGI LA A KGYRLI MP + S+ERR +L +
Sbjct: 60 MIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELY 118
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GA+++ + G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +
Sbjct: 119 GAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PE 177
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I V+G+GT GT+ G G++L+EH +K+ EP G + ++ + GF+P
Sbjct: 178 ITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVP 230
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK--L 238
+ D +L + + +A+ + L EG+ GIS+GA AA+ + AG+
Sbjct: 231 ELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERAD 290
Query: 239 IVVVFPSFGERYLSSVLFESVKKEAESMV 267
I +V G +YLS+ + +AE+ +
Sbjct: 291 IALVVADAGWKYLSTGAYAGSLDDAETAL 319
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 432 bits (1113), Expect = e-155
Identities = 108/257 (42%), Positives = 163/257 (63%), Gaps = 11/257 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI +AE++G I+PG VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+
Sbjct: 48 MIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAY 106
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+L +GM+GA A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+
Sbjct: 107 GAELILVTKEQGMEGARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGR 165
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I VS +GT GT+TG ++++E + + + G++P E + + G + P ++P
Sbjct: 166 ITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT-------EYLP 218
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
G+ + +L+DE + I +A T + LA++EG+ G+SSG A A A+++A N ++V
Sbjct: 219 GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVV 276
Query: 241 VVFPSFGERYLSSVLFE 257
+ G+RYLS+ +F
Sbjct: 277 AIICDRGDRYLSTGVFG 293
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 415 bits (1068), Expect = e-147
Identities = 63/259 (24%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
+I+ + + G S++ + TS N G+ L+ +A GYR + +P + +++
Sbjct: 134 IISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLL 190
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK---GT 117
GA++++ A + + + K + QF N AN + H T EI+
Sbjct: 191 GAQVIVDPEAPSTVHLLPRVMKDS-KNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRG 249
Query: 118 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAG 177
G + + +GT G ++ A YL+ +P I+ V+P + + G I+ + G
Sbjct: 250 GLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IRRVETG 302
Query: 178 FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK 237
+ + +++ +++ EEA+E +A +GL++G S GAA A + A +
Sbjct: 303 MLW-INMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPG 361
Query: 238 LIVVVFPSFGERYLSSVLF 256
VVV P G +YLS V
Sbjct: 362 DYVVVVPDTGFKYLSLVQN 380
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 412 bits (1062), Expect = e-144
Identities = 98/265 (36%), Positives = 149/265 (56%), Gaps = 10/265 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ DAEE+GL++PG +IEPTSGNTGIGLA A KGY+ II MP MS E+ L
Sbjct: 100 MVQDAEEQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTL 158
Query: 61 GAELVLTD---PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 117
GA+++ T +G + A++++ +TPNS VL Q+ N NP HY+ T EI
Sbjct: 159 GAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQL 218
Query: 118 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-----LSGGKPGPHKIQ 172
K+D +V GT GT++G G+ +KE P ++ GV+P S + L+ ++++
Sbjct: 219 DNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVE 278
Query: 173 GIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232
GIG F P V D ++D +I + ++ L +EGLL G SSG A AA++ A++
Sbjct: 279 GIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARK- 337
Query: 233 ENAGKLIVVVFPSFGERYLSSVLFE 257
G+ VV+ P Y++ + +
Sbjct: 338 LKKGQRCVVILPDGIRNYMTKFVSD 362
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 408 bits (1050), Expect = e-143
Identities = 109/265 (41%), Positives = 160/265 (60%), Gaps = 10/265 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE G ++PG +IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A
Sbjct: 148 MIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRAL 206
Query: 61 GAELVLTD---PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 117
GAE+V T + V A ++++ PNS++L Q+ N +NP HY+TT EI +
Sbjct: 207 GAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQC 266
Query: 118 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-----LSGGKPGPHKIQ 172
GK+D LV+ +GTGGT+TG + LKE P ++ GV+P S + L+ + ++++
Sbjct: 267 DGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVE 326
Query: 173 GIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232
GIG FIP VLD ++D+ + + EEA A++L +EGLL G S+G+ A A++ A+
Sbjct: 327 GIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQEL 386
Query: 233 ENAGKLIVVVFPSFGERYLSSVLFE 257
+ G+ VV+ P Y++ L +
Sbjct: 387 Q-EGQRCVVILPDSVRNYMTKFLSD 410
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 81.4 bits (201), Expect = 9e-18
Identities = 45/243 (18%), Positives = 78/243 (32%), Gaps = 38/243 (15%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG----AV 77
++GN G+ + M+A G+++ + M A ++ L + G +V + AV
Sbjct: 167 STGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYE------QDYGVAV 220
Query: 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI--------WKGTGGKIDALVSGIG 129
++ + PN EN + Y G + + G
Sbjct: 221 EEGRKAAQSDPN-CFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCG 279
Query: 130 TGGTVTGAGKYLKEH-NPEIKLYGVEPVESAV----LSGGKPGPHKIQGIG--------- 175
GG G LK + + EP S + G +Q IG
Sbjct: 280 VGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADG 339
Query: 176 -----AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK 230
A G LLD +S + + LA +EG+ + S+ A A ++
Sbjct: 340 LAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCA 399
Query: 231 RPE 233
Sbjct: 400 SVS 402
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 74.1 bits (182), Expect = 3e-15
Identities = 50/250 (20%), Positives = 76/250 (30%), Gaps = 32/250 (12%)
Query: 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 76
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD--MNYDDT 171
Query: 77 VQKAEEIRDKTPNSYVLQQFENPANPKIH------YETTGPEIW---KGTGGKIDALVSG 127
V+ + + V+Q KI Y T E + G ++
Sbjct: 172 VRLTMQHAQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQ 230
Query: 128 IGTGGTVTGAGKYLKEH--NPEIKLYGVEPVESAV----LSGGKPGPHKIQ------GIG 175
G G G YL + + VEP ++ G G+
Sbjct: 231 AGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLA 290
Query: 176 AGFIPGVL--DV--NLLDETVQISSEEAIETAKLLALKEGLLVGIS---SGAATAAAIQI 228
G P L ++ N + + A ++L G I SGA +
Sbjct: 291 CG-EPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAA 349
Query: 229 AKRPENAGKL 238
L
Sbjct: 350 VHYHPQRQSL 359
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 72.3 bits (178), Expect = 8e-15
Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 28/249 (11%)
Query: 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARG 72
G+ ++ ++GNT A AA G + +P +++ + + GA+++ D
Sbjct: 84 GQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFD 143
Query: 73 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGT 130
++ A ++ P ++ N NP +T EI G D +G
Sbjct: 144 --DCLELARKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGN 197
Query: 131 GGTVTGAGKYLKE--------HNPEIKLYGVEPVESAVLSGGKPGPHK---IQGIGAGFI 179
G +T K E P ++ G + +A L G+P H I G
Sbjct: 198 AGNITAYWKGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSP 255
Query: 180 P-GVLDVNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE- 233
V ++ + S EE + L+A EG+ V +S A+ A ++
Sbjct: 256 ASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWV 315
Query: 234 NAGKLIVVV 242
G +V
Sbjct: 316 ARGSTVVCT 324
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 70.0 bits (172), Expect = 5e-14
Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 29/249 (11%)
Query: 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARG 72
G + ++GNT A AA G I+ +PA +L + L GA +V +
Sbjct: 76 GAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFD 135
Query: 73 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGT 130
A++ +++ + P + V N NP +T E+ G +G
Sbjct: 136 --DALRLTQKLTEAFPVALV-----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGN 188
Query: 131 GGTVTGAGKYLKE--------HNPEIKLYGVEPVESAVLSGGKP--GPHKI-QGIGAGFI 179
G +T K P ++ G + +A L G+P P + I G
Sbjct: 189 AGNITAHWMGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRPVERPETLATAIRIGNP 246
Query: 180 P-GVLDVNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE- 233
V +E+ ++ EE + + LA +EG+ +S AA A ++ +
Sbjct: 247 ASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRL 306
Query: 234 NAGKLIVVV 242
+V+
Sbjct: 307 EPESTVVLT 315
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 67.7 bits (166), Expect = 3e-13
Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 29/249 (11%)
Query: 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARG 72
G+ +I ++GNT A AA G R + +P ++ + + +GA+++
Sbjct: 78 GKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFD 137
Query: 73 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGT 130
A+ +I + P V N NP +T EI G D +G
Sbjct: 138 --DALNIVRKIGENFPVEIV-----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGN 190
Query: 131 GGTVTGAGKYLKE--------HNPEIKLYGVEPVESAVLSGGKPGPHK---IQGIGAGFI 179
G +T K K P ++ G + +A + G P + I G
Sbjct: 191 AGNITAYWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNP 248
Query: 180 P-GVLDVNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE- 233
+ E+ +S E + KL+A EG+ +S A+ A I++ +
Sbjct: 249 YSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFF 308
Query: 234 NAGKLIVVV 242
G+++
Sbjct: 309 KGGEVVTCT 317
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 67.5 bits (165), Expect = 5e-13
Identities = 51/299 (17%), Positives = 102/299 (34%), Gaps = 44/299 (14%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLA 59
+++ ++ + ++G+T L+ A+ G I+ +PA +S+ + + +A
Sbjct: 170 LVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIA 229
Query: 60 FGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGT 117
GA ++ D G ++ EI + P N N +T EI +
Sbjct: 230 NGAFVLSIDTDFD--GCMKLIREITAELPIYLA-----NSLNSLRLEGQKTAAIEILQQF 282
Query: 118 GGKI-DALVSGIGTGGTVTGAGKYLK--------EHNPEIKLYGVE-----PVESAVLSG 163
++ D ++ G G + K K + P ++ + P+ SG
Sbjct: 283 DWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSG 340
Query: 164 GK-----PGPHKI-QGIGAGFIP-GVLDVNLLDET---VQISSEEAIETAKLLALKEGLL 213
K I G V L + V+ ++EE + A A G+
Sbjct: 341 WKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMF 400
Query: 214 VGISSGAATAAAIQIAKRPE-NAGKLIVVV-------FPSFGERYLSSVLFESVKKEAE 264
+ +G A A ++ + VVV F Y S+ + + + +
Sbjct: 401 ICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSN 459
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 64.1 bits (157), Expect = 4e-12
Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 43/244 (17%)
Query: 23 SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEE 82
SGN +A A G I MP + +G ++++ D + A+E
Sbjct: 82 SGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREKMAKE 139
Query: 83 IRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSGIGTGG 132
I ++ + I Y+ T E+++ G +DAL +G GG
Sbjct: 140 ISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEEVGP-LDALFVCLGGGG 186
Query: 133 TVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQ-----GIGAGFIPGVL 183
++G+ + P ++YGVEP G G G
Sbjct: 187 LLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQ-HLGNY 245
Query: 184 --DVN--LLDETVQISSEEAIETAKLLALKEGLLV-GISSGAATAAAIQIAKRPENAGKL 238
+ +D+ + +S EE I+ K A + ++V +G + AA A + + K
Sbjct: 246 TFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEP--TGCLSFAAA-RAMKEKLKNKR 302
Query: 239 IVVV 242
I ++
Sbjct: 303 IGII 306
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 63.7 bits (156), Expect = 6e-12
Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 42/245 (17%)
Query: 23 SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEE 82
SGN G L + A +G I +P + +++ + A+GA +V +P+ + A+
Sbjct: 84 SGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRENVAKR 141
Query: 83 IRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSGIGTGG 132
+ ++T ++ +H + T E+ +DALV +G GG
Sbjct: 142 VTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQVPL-VDALVVPVGGGG 188
Query: 133 TVTGAGKYLKEHNPEIKLYGVEP--VESAVLS--GGKPGPHKIQ------GIGAGFIPGV 182
+ G +K P +K+Y EP + S GK P+ G+ + G+
Sbjct: 189 MLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS--IGL 246
Query: 183 LDV----NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENA-GK 237
+L+D+ ++ +E +L+ + LL+ ++G AA + + + K
Sbjct: 247 NTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVK 306
Query: 238 LIVVV 242
I +V
Sbjct: 307 NICIV 311
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 62.9 bits (154), Expect = 1e-11
Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 45/247 (18%)
Query: 23 SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEE 82
SGN G+A+ A G + ++ MP S ++ A+GAE+V K + A
Sbjct: 73 SGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTA--KNREEVARA 130
Query: 83 IRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIW---KGTGGKIDALVSGIG 129
++++T Y L IH ++ T G E+ G A+++ +G
Sbjct: 131 LQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVG 178
Query: 130 TGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQ------GIGAGFI 179
GG + G +K +P + GVEP + L G+ + G+
Sbjct: 179 GGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTL-S 237
Query: 180 PGVL--DVN--LLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENA 235
G + +D + + SEEA+ A+ L V +GA AA + +
Sbjct: 238 LGERTFPILRERVDGILTV-SEEALLEAERLLFTRTKQVVEPTGALPLAA--VLEHGARL 294
Query: 236 GKLIVVV 242
+ + ++
Sbjct: 295 PQTLALL 301
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 59.6 bits (145), Expect = 2e-10
Identities = 48/241 (19%), Positives = 87/241 (36%), Gaps = 41/241 (17%)
Query: 24 GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG-----AVQ 78
GN G+ A+ A G I +P + L GA + G A +
Sbjct: 102 GNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVV-------GELLDEAFE 154
Query: 79 KAEEIRDKTPNSYVLQQFENP------ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 132
A+ + P + F++P A + E+ + K A+ +G GG
Sbjct: 155 LAKALAKNNPGWVYIPPFDDPLIWEGHA-------SIVKELKETLWEKPGAIALSVGGGG 207
Query: 133 TVTGAGKYLKEHN-PEIKLYGVEPVESAV----LSGGK----PGPHKI-QGIGAGFIPGV 182
+ G + L+E ++ + +E + + GK P + + +G G
Sbjct: 208 LLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVK-TVGS 266
Query: 183 LDVNL----LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ-IAKRPENAGK 237
+ L + IS +EA+ + E +LV + GAA AA + ++ + G
Sbjct: 267 QALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGN 326
Query: 238 L 238
L
Sbjct: 327 L 327
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 58.0 bits (141), Expect = 6e-10
Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 39/243 (16%)
Query: 23 SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEE 82
+GN G++ A G + MP + + AE+VL + K E
Sbjct: 96 AGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHG--DNFNDTIAKVSE 153
Query: 83 IRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSGIGTGG 132
I + + I Y+ T G EI + +D ++ IG GG
Sbjct: 154 IVETE--GRIF----------IPPYDDPKVIAGQGTIGLEIMEDLY-DVDNVIVPIGGGG 200
Query: 133 TVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQGIGA--------GFIP 180
+ G +K NP IK+ GV+ G+ H+ G A G +
Sbjct: 201 LIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADGCDVSRPGNLT 260
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPEN-AGKLI 239
+ L+D+ V + SE+ I + + ++ ++ +GA AA+ K + +
Sbjct: 261 YEIVRELVDDIVLV-SEDEIRNSMIALIQRNKVITEGAGALACAALLSGKLDSHIQNRKT 319
Query: 240 VVV 242
V +
Sbjct: 320 VSI 322
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 56.4 bits (137), Expect = 2e-09
Identities = 51/251 (20%), Positives = 82/251 (32%), Gaps = 48/251 (19%)
Query: 24 GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG-----AVQ 78
GN GI A+ A G I +P S SL+ L GAE+ LT G A
Sbjct: 63 GNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLT-------GKVWDEANL 115
Query: 79 KAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPEIWKGTGGKIDALV-SGIGTG 131
+A+E+ + V P H + E+ ALV + G G
Sbjct: 116 RAQELAKRDGWENV--------PPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGG 167
Query: 132 GTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKI-----QGIGAGFIPGV 182
L+ + + +E + ++ GK + +GA
Sbjct: 168 LLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAK-TVAA 226
Query: 183 LDVNL----LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA-------IQIAKR 231
+ + + EA+ + L E +LV + GAA AA +Q
Sbjct: 227 RALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQAEGC 286
Query: 232 PENAGKLIVVV 242
+ +VV+
Sbjct: 287 LPPSLTSVVVI 297
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 55.7 bits (135), Expect = 4e-09
Identities = 51/240 (21%), Positives = 87/240 (36%), Gaps = 45/240 (18%)
Query: 29 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG-----AVQKAEEI 83
G+AF +A G + +I MP + + + + FG E++L G A KA E+
Sbjct: 93 GVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLH-------GANFDEAKAKAIEL 145
Query: 84 RDKTPNSYVLQQFENPANPKIHYE------TTGPEIWKGTGGKIDALVSGIGTGGTVTGA 137
+ ++V P H T E+ + +D + +G GG G
Sbjct: 146 SQQQGFTWV--------PPFDHPMVIAGQGTLALELLQQDA-HLDRVFVPVGGGGLAAGV 196
Query: 138 GKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQGIGAGFIPGV---------LD 184
+K+ P+IK+ VE +SA L G P + +G F GV
Sbjct: 197 AVLIKQLMPQIKVIAVEAEDSACLKAALDAGH--PVDLPRVGL-FAEGVAVKRIGDETFR 253
Query: 185 V--NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
+ LD+ + + S+ K L + S A A + G+ + +
Sbjct: 254 LCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 313
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 53.4 bits (129), Expect = 2e-08
Identities = 50/239 (20%), Positives = 83/239 (34%), Gaps = 43/239 (17%)
Query: 29 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT----DPARGMKGAVQKAEEIR 84
G+A I MP + + + A G ++VL D A+ A E+
Sbjct: 122 GVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQ------THALELS 175
Query: 85 DKTPNSYVLQQFENPANPKIHYE------TTGPEIWKGTGGKIDALVSGIGTGGTVTGAG 138
+K Y+ F++P T G EI + I A+ +G GG + G
Sbjct: 176 EKDGLKYI-PPFDDP-------GVIKGQGTIGTEINRQLK-DIHAVFIPVGGGGLIAGVA 226
Query: 139 KYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQGIGAGFIPGV-----------L 183
+ K+ P K+ GVEP +A L G F GV
Sbjct: 227 TFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDT---FADGVAVALVGEYTFAK 283
Query: 184 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
L+D V ++++ K + + ++ S A A A + + + IV +
Sbjct: 284 CQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIKNENIVAI 342
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 47.2 bits (112), Expect = 2e-06
Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 23/181 (12%)
Query: 80 AEEIRDKTPNSYVL-QQFENPANPKIHY---ETTGPEIWKGTGGKIDALVSGIGTGGTVT 135
E +R Y + + + + G K D +V TG T
Sbjct: 145 LESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204
Query: 136 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGI--------GAGFIPGVLDVNL 187
G ++ GV + +I I G DV L
Sbjct: 205 GMVVGFAADGRADRVIGV-----DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVL 259
Query: 188 LDETVQ----ISSEEAIETAKLLALKEGLLVG-ISSGAATAAAIQIAKRPE-NAGKLIVV 241
+ + +E +E +L A EG+L + G + I++ + E G ++
Sbjct: 260 DERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY 319
Query: 242 V 242
Sbjct: 320 A 320
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 37.5 bits (88), Expect = 0.003
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 37/130 (28%)
Query: 146 PEIKLYGVEP----VES----AVLSGGKPG-------------------PHKIQGIGAGF 178
+ L GVEP +E+ A L G+ G + I AG
Sbjct: 247 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSIS---AGL 303
Query: 179 -IPGV------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKR 231
P V L+ + V I+ +EA+E K L EG++ + S A A A+++ +
Sbjct: 304 DFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 363
Query: 232 PENAGKLIVV 241
+L+VV
Sbjct: 364 QPEKEQLLVV 373
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 35.8 bits (82), Expect = 0.010
Identities = 29/205 (14%), Positives = 59/205 (28%), Gaps = 22/205 (10%)
Query: 55 MVLLAFGAELVLTDPARGMKGAVQK-AEEIRDKTPNSYVLQQ-FENPANPKIHY---ETT 109
++ ++ GM+ + +E+ D Y + + +
Sbjct: 122 SRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADE 181
Query: 110 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPH 169
G K D +V TG T G + ++ + + + +
Sbjct: 182 VINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAI-----DASFTSEKTKE 236
Query: 170 KIQGI------GAGFIPGVLDVNLLDETVQ----ISSEEAIETAKLLALKEGLLV-GISS 218
+ I G D L + +E IE + A +EG+L +
Sbjct: 237 QTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYE 296
Query: 219 GAATAAAIQ-IAKRPENAGKLIVVV 242
G + I I + G ++ V
Sbjct: 297 GKSMQGLIALIKEDYFKPGANVLYV 321
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.013
Identities = 40/218 (18%), Positives = 65/218 (29%), Gaps = 84/218 (38%)
Query: 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE------RRM 55
+ A+ G PGE L G TG + A I + S E R+
Sbjct: 250 VVTAKLLGF-TPGE--LRSYLKGATGHSQGLVTAV-----AIA--ETDSWESFFVSVRKA 299
Query: 56 VLLAF--GAELVLTDPARGMK-GAVQKAEEIRDKTPNSYVL-------QQFE------N- 98
+ + F G P + ++ + E + P S +L +Q + N
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNS 358
Query: 99 --PANPKIHYETTGPEIWKGTGGKIDALVSG----IGTGGTVTGAGKYLKEHNPEIKLYG 152
PA ++ I +LV+G + V+G P+ LYG
Sbjct: 359 HLPAGKQVE-------I---------SLVNGAKNLV-----VSG--------PPQ-SLYG 388
Query: 153 VEPVESAVLSGGKPGPHKIQG----------IGAGFIP 180
+ + L K Q F+P
Sbjct: 389 L----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Score = 33.5 bits (76), Expect = 0.086
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 63/164 (38%)
Query: 137 AGKYLKEHNPEIKLYGV--------EPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLL 188
A + K+ YG PV + GG+ G + I + + + ++
Sbjct: 1649 ADNHFKDT------YGFSILDIVINNPVNLTIHFGGEKG----KRIRENYSAMIFE-TIV 1697
Query: 189 DETVQISS--EEAIETAKLLALK--EGLLVGISSGAATA-----------AAIQIAK--- 230
D ++ +E E + + +GLL +AT AA + K
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLL------SATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 231 -RPENAGKLIVVVFP--SFGERY--LSSVLFESVKKEAESMVFE 269
P +A F S GE Y L+S+ A+ M E
Sbjct: 1752 LIPADA------TFAGHSLGE-YAALASL--------ADVMSIE 1780
Score = 31.2 bits (70), Expect = 0.42
Identities = 47/264 (17%), Positives = 68/264 (25%), Gaps = 99/264 (37%)
Query: 62 AELVLTDPARGMKGAVQKAEEIRDKTPNSY------VLQQFENP--ANPKIH-------- 105
AELV + + G V + + + L +FEN IH
Sbjct: 58 AELV----GKFL-GYV--SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 106 ---------------Y----ETTGPEIWKGTGGKIDALVSGIGTGGTVT-----GAG--- 138
Y K + AL +G G G G
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSN---SALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 139 KYLKEHNPEIKLYG-----VEP-VESA--VLSGGKPGPHKIQGIGAGFIPGVLDV-NLLD 189
Y +E LY V ++ + LS + L++ L+
Sbjct: 168 DYFEEL---RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK----VFTQGLNILEWLE 220
Query: 190 ETVQISSEEA-------------------IETAKLLALKEGLLVGISSGAA-------TA 223
++ + TAKLL G L GA TA
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 224 AAIQIAKRPE----NAGKLIVVVF 243
AI E + K I V+F
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLF 304
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 35.7 bits (83), Expect = 0.014
Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 39/160 (24%)
Query: 117 TGGKIDALVSGIGTGGTVTGA-GKYLKEHNPEIKLYGVEP----VES----AVLSGGKPG 167
G DAL++ +G G G + KL GVE + + A + GK G
Sbjct: 242 FGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRG 301
Query: 168 -------------------PHKIQGIGAGF-IPGV------LDVNLLDETVQISSEEAIE 201
H + AG PGV + E ++ EEA+E
Sbjct: 302 VLHGSYMYLLYDHDGQITPAHSVS---AGLDYPGVGPEHSYYADAGVAEYASVTDEEALE 358
Query: 202 TAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 241
KLLA EG++ + S A A A ++ + +++V+
Sbjct: 359 GFKLLARLEGIIPALESAHAIAYAAKVVPE-MDKDQVVVI 397
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 34.4 bits (80), Expect = 0.032
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 41/160 (25%)
Query: 117 TGGKIDALVSGIGTGGTVTGA-GKYLKEHNPEIKLYGVEP----VES----AVLSGGKPG 167
G D +V+ +G G G ++ + ++KL GVE +ES A L+ G+ G
Sbjct: 215 EGQLPDVIVACVGGGSNAMGIFYPFVND--KKVKLVGVEAGGKGLESGKHSASLNAGQVG 272
Query: 168 -------------------PHKIQGIGAGF-IPGV------LDVNLLDETVQISSEEAIE 201
H I G PGV L E V ++ EEA++
Sbjct: 273 VFHGMLSYFLQDEEGQIKPTHSIA---PGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALK 329
Query: 202 TAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 241
L+ EG++ + S A A A+++AK + ++I+V
Sbjct: 330 AFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIV 368
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 34.3 bits (79), Expect = 0.034
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 11 IRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLI-ITMPASMSLERRMVLLAFGAELVLT 67
+ PG+ I+ G + +G + + I + E L GA V+T
Sbjct: 164 LTPGKDWFIQ-NGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVIT 222
Query: 68 DPARGMKGAVQKAEEIRDK 86
+ + +E +
Sbjct: 223 EDQNNSREFGPTIKEWIKQ 241
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 34.1 bits (79), Expect = 0.036
Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 41/160 (25%)
Query: 117 TGGKIDALVSGIGTGGTVTGA-GKYLKEHNPEIKLYGVEP----VES----AVLSGGKPG 167
G DA+V+ +G G G +L + P ++L G E VE+ A + G PG
Sbjct: 246 AGRLPDAVVACVGGGSNAIGIFHAFLDD--PGVRLVGFEAAGDGVETGRHAATFTAGSPG 303
Query: 168 -------------------PHKIQGIGAGF-IPGV------LDVNLLDETVQISSEEAIE 201
H I AG PGV L + I+ EA++
Sbjct: 304 AFHGSFSYLLQDEDGQTIESHSIS---AGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMD 360
Query: 202 TAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 241
LL EG++ I S A A A+++ G +IVV
Sbjct: 361 AFGLLCRMEGIIPAIESAHAVAGALKLGVE-LGRGAVIVV 399
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 33.3 bits (77), Expect = 0.065
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLA--FMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64
+K +RPG+ VL+ G+ +A +A G R+I T + S ++ A GA+
Sbjct: 160 DKLGVRPGDDVLVMAAGS--GVSVAAIQIAKLFGARVIAT---AGSEDKLRRAKALGADE 214
Query: 65 V 65
Sbjct: 215 T 215
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 33.3 bits (76), Expect = 0.075
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 12/137 (8%)
Query: 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65
+ ++ G+ VLI SG G G + S ++ + A G +LV
Sbjct: 213 DRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAV---VSSAQKEAAVRALGCDLV 269
Query: 66 LTDPARGMKGAVQK-AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK------GTG 118
+ G+ + + + L + P I +E TG + G
Sbjct: 270 INRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRG 329
Query: 119 GKIDALVSGIGTGGTVT 135
G + + G +G T
Sbjct: 330 GTV--VTCGSSSGYLHT 344
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 31.0 bits (71), Expect = 0.33
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65
EKG +R G+ V+++ T G GL A A G +I+T S S E+ A GA+
Sbjct: 183 EKGHLRAGDRVVVQGTGGVALFGLQI-AKATGAEVIVT---SSSREKLDRAFALGADHG 237
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 29.8 bits (67), Expect = 0.92
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66
++ G++VLI SG G A A G I S ++ + A GAE ++
Sbjct: 222 NGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICV---VSSPQKAEICRAMGAEAII 278
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 29.3 bits (66), Expect = 1.4
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 3 ADAEEKGLIRPGESVLIEPTSGNTG---IGLAFMAAAKGY---RLIITMPASMSLERRMV 56
A G IRPG++V+I G IGLA +A K ++I++ S RR +
Sbjct: 203 AVIVRGGGIRPGDNVVI------LGGGPIGLAAVAILKHAGASKVILS---EPSEVRRNL 253
Query: 57 LLAFGAELVLTDPAR 71
GA+ V+ DP +
Sbjct: 254 AKELGADHVI-DPTK 267
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 29.1 bits (66), Expect = 1.7
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64
++ GESVL+ SG G+GLA +A A G +++ T A + E + ++L GA
Sbjct: 164 HSACVKAGESVLVHGASG--GVGLAACQIARAYGLKILGT--AG-TEEGQKIVLQNGAHE 218
Query: 65 VL 66
V
Sbjct: 219 VF 220
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 28.7 bits (65), Expect = 1.7
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64
+G +R GE+VL+ +G GIG A +A G ++I + + + GA++
Sbjct: 153 RRGQLRAGETVLVLGAAG--GIGTAAIQIAKGMGAKVIAV--VN-RTAATEFVKSVGADI 207
Query: 65 VL 66
VL
Sbjct: 208 VL 209
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 29.1 bits (65), Expect = 1.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
+G ++PGESVLI SG+ G+G A +A A + + +R + F
Sbjct: 1661 VRGRMQPGESVLIH--SGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARF 1712
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 28.7 bits (65), Expect = 1.9
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64
+ + GESVLI + GIG +A A G + T A S + GA+
Sbjct: 161 QMAGLTEGESVLIHGGTS--GIGTTAIQLARAFGAEVYAT--AG-STGKCEACERLGAKR 215
Query: 65 V 65
Sbjct: 216 G 216
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 28.7 bits (65), Expect = 2.0
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64
G ++ G+ VLI G+G A + G ++T A S ++ + GA
Sbjct: 156 LVGNVQAGDYVLIHAGLS--GVGTAAIQLTRMAGAIPLVT--AG-SQKKLQMAEKLGAAA 210
Query: 65 V 65
Sbjct: 211 G 211
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 28.0 bits (62), Expect = 3.1
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66
E + +++ + N G L + G +L+ E+ +L A GA V
Sbjct: 165 ETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNI---VRKQEQADLLKAQGAVHVC 221
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 28.4 bits (62), Expect = 3.3
Identities = 3/26 (11%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 129 GTGGTVTGAGKYLKEHNPEIKLYGVE 154
G+G + P +++ +
Sbjct: 331 GSGNLLATVSAGFNNVMPR-QIWAND 355
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 27.9 bits (63), Expect = 3.7
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 7 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64
++ RPGE VL++ +G +G A +A A G R++ AS E+ + LA GAE
Sbjct: 119 KRAQARPGEKVLVQAAAG--ALGTAAVQVARAMGLRVLAA--AS-RPEKLALPLALGAEE 173
Query: 65 VL 66
Sbjct: 174 AA 175
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 27.9 bits (63), Expect = 3.9
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 30/82 (36%)
Query: 8 KGLIRPGESVLIE-PT-------------------SGNTGI---GLAFMAAAKGYRLIIT 44
K + G VL+E P+ +G G L + + R +
Sbjct: 109 KVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYL 168
Query: 45 MP-------ASMSLERRMVLLA 59
+P L R LL
Sbjct: 169 IPSFQNPTGGLTPLPARKRLLQ 190
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 27.6 bits (62), Expect = 4.3
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 11 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66
I+P E L +G G+ A A G +LI T + ++ L GA V+
Sbjct: 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGT--VG-TAQKAQSALKAGAWQVI 190
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 27.8 bits (62), Expect = 4.3
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 17 VLIEPTSGNTGIGLAF--MAAAKGYRLIITM--PASMSLERRMVLLAFGA---------E 63
+LI T ++G G A G+R+ +M + + F E
Sbjct: 8 ILI--TGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLE 65
Query: 64 LVLTDPARGMKGAVQKAEE 82
L + + A+ +
Sbjct: 66 LDVQSQVS-VDRAIDQIIG 83
>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1
Length = 290
Score = 27.7 bits (61), Expect = 4.5
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 155 PVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGL-L 213
V PGPH G G G ++ L + + + +E L G+ L
Sbjct: 25 VGTGPVPGEAYPGPHAALGYGEGQFAA--LLSGLPDWGEEGTLFLLEGGYDLGEAAGMAL 82
Query: 214 VGISSGA 220
+ + A
Sbjct: 83 LAETGRA 89
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Length = 326
Score = 27.6 bits (62), Expect = 5.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 213 LVGISSGAATAAAIQI 228
L+G+S+GA +
Sbjct: 90 LLGVSNGAGVGLIAAV 105
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 26.8 bits (60), Expect = 5.7
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 11 IRPGESVLIEPTSGNTGIGLAFMAAAK--GYRLIITMPASMSLERRMVLLAFGAE 63
+ PGE VLI S G+G+A ++ AK G R+ T A S +R +L G E
Sbjct: 36 LSPGERVLI--HSATGGVGMAAVSIAKMIGARIYTT--AG-SDAKREMLSRLGVE 85
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 27.1 bits (60), Expect = 5.8
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 197 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 241
+E +L+G S G A A + + L ++
Sbjct: 98 GNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 142
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 5.8
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 141 LKEHNPEIKLYGVEPVESA 159
LK+ +KLY +SA
Sbjct: 22 LKKLQASLKLY--AD-DSA 37
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target,
NYSGXRC, PSI, protein structure initiative; 2.40A
{Mycobacterium tuberculosis} SCOP: c.26.2.4
Length = 163
Score = 26.8 bits (60), Expect = 6.1
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 213 LVGI----SSGAATAAAIQIAKRPENAGKLIVVVF--PSFGERYLSSVLFESVKKEAE 264
+VG SS A A QIA +A +I + R + ES K
Sbjct: 21 VVGTDGSDSSMRAVDRAAQIAGA--DAKLIIASAYLPQHEDARAADILKDESYKVTGT 76
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 26.8 bits (59), Expect = 7.2
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 22 TSGNTGIGLAFMA--AAKGYRLIIT 44
T GN GIG ++ G +++T
Sbjct: 18 TGGNKGIGFEICKQLSSNGIMVVLT 42
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 27.0 bits (59), Expect = 7.3
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 175 GAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPEN 234
G V + ++ ++ + L + VG+ +GA + + P+
Sbjct: 77 GMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYAL-NHPDT 135
Query: 235 AGKLIVV 241
L+++
Sbjct: 136 VEGLVLI 142
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 26.8 bits (60), Expect = 7.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 11 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66
++PGE +L +G G A A G +LI T S S E+ A GA +
Sbjct: 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGT--VS-SPEKAAHAKALGAWETI 190
>2ekd_A Hypothetical protein PH0250; NPPSFA, national project on protein
structural and functiona analyses; 2.30A {Pyrococcus
horikoshii}
Length = 207
Score = 26.8 bits (59), Expect = 7.6
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 11 IRPGESVLIE-PTSGNTGIGLAFMAAAKGYRLII 43
R GE+VL+E + + L ++ +++
Sbjct: 12 FRVGETVLVEYSGTSRAELLLYYIVNNSKLPIVV 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.134 0.373
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,240,993
Number of extensions: 280796
Number of successful extensions: 787
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 98
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.2 bits)