BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024253
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|B Chain B, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|C Chain C, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|D Chain D, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
Length = 172
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 108/170 (63%), Gaps = 14/170 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LDIRVG+II +H +ADSLYVE++DVGEAEPR + SGLV++VP + LQDR VVVL NLK
Sbjct: 10 LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 69
Query: 166 PRNMRGVKSNGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 220
P+ MRGV+S GMLL AS + + VE L+PP GS PGE ++ E D+E +P
Sbjct: 70 PQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKP---- 125
Query: 221 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 270
KKK++E +Q K +A + T G++ +SLK NIS
Sbjct: 126 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 170
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
pdb|1EUJ|B Chain B, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
Length = 166
Score = 140 bits (354), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LD+R+G II A +H +ADSLYVEEVDVGE PR + SGLV +VPL+ +Q+R V++L NLK
Sbjct: 9 LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 68
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 222
P MRGV S M++ AS + E +E+L PP GSVPG+RI F + + DKE P
Sbjct: 69 PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 120
Query: 223 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 269
KKKIWE +QP L T+ VA G G ++++ N+ I
Sbjct: 121 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 165
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 174
Score = 140 bits (354), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LD+R+G II A +H +ADSLYVEEVDVGE PR + SGLV +VPL+ +Q+R V++L NLK
Sbjct: 9 LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 68
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 222
P MRGV S M++ AS + E +E+L PP GSVPG+RI F + + DKE P
Sbjct: 69 PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 120
Query: 223 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 269
KKKIWE +QP L T+ VA G G ++++ N+ I
Sbjct: 121 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 165
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 171
Score = 140 bits (353), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LD+R+G II A +H +ADSLYVEEVDVGE PR + SGLV +VPL+ +Q+R V++L NLK
Sbjct: 6 LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 65
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 222
P MRGV S M++ AS + E +E+L PP GSVPG+RI F + + DKE P
Sbjct: 66 PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 117
Query: 223 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 269
KKKIWE +QP L T+ VA G G ++++ N+ I
Sbjct: 118 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 162
>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From
Pyrococcus Abyssi
Length = 107
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LD+RVG+II+ H AD LYV +VD+G+ E R + +GL KY + L +R VVV+ANL+
Sbjct: 11 LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLE 69
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
P+ +RG+ S GMLLAA D E V LL P + G ++
Sbjct: 70 PKKLRGIGSQGMLLAADDG--ERVALLMPDKEVKLGAKV 106
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 97 VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDR 156
V D A LD+RVG+II+ H AD LYV +VD+G+ E R + +GL KY + L +R
Sbjct: 618 VKFDDFAK-LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNR 675
Query: 157 SVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
VVV+ANL+P+ +RG+ S GMLLAA D E V LL P + G ++
Sbjct: 676 YVVVVANLEPKKLRGIGSQGMLLAADDG--ERVALLMPDKEVKLGAKV 721
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111
Length = 118
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
L++RVG+I++ RHE AD LY+ +VDVG+ + + S LV Y + L ++VVVL NL+
Sbjct: 12 LEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTS-LVPYYSEEELMGKTVVVLCNLQ 70
Query: 166 PRNMRGVKSNGMLLAA-SDAAHENVELLEPPQGSVPGERI 204
MRG S MLL A +D E+V LL P + G R+
Sbjct: 71 KAKMRGETSECMLLCAETDDGSESV-LLTPERMMPAGVRV 109
>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|B Chain B, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|C Chain C, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|D Chain D, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
Length = 111
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
+D+RV +++ A R E ++ L + +G+ E R + +G+ KY + L + +V++ANLK
Sbjct: 15 VDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLK 73
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
PR + G++S GM+LAASD EN+ ++ P + G ++
Sbjct: 74 PRKIFGIESQGMILAASDG--ENLSVIVPDRDVKEGAKL 110
>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus
Horikoshii
Length = 112
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 101 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVV 160
D ++VG + KA + + L VD G E R I +G+ +P + L+ + +
Sbjct: 10 DEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEE-RTIVTGIADQIPPEELEGKKFIF 68
Query: 161 LANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIW 205
+ NLKP+ GV+S GML+ A + V L+ P+ G R+W
Sbjct: 69 VVNLKPKKFSGVESQGMLILA-ETEDGKVYLIPVPEEVPVGARVW 112
>pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
pdb|2E8G|B Chain B, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
Length = 241
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 99 VKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSV 158
+ D +DI VG ++ +H AD L V V++GE ++ + L +++ +
Sbjct: 129 INDPVIAVDIVVGEVMSVGKHPSADRLLVTNVNIGERAVTVVTNDLT-------VKEGNR 181
Query: 159 VVLANLKPRNMRGVKSNGMLLAASDAAHENV--ELLEPPQG 197
V +A L PRN G+ S GM L A + +NV E+ P+G
Sbjct: 182 VAVALLPPRNFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKG 222
>pdb|2NZH|A Chain A, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 4 21 2
pdb|2NZH|B Chain B, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 4 21 2
pdb|2NZO|A Chain A, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|B Chain B, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|C Chain C, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|D Chain D, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
Length = 113
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 99 VKDAANMLDIRVGRIIKAWRHEEAD----SLYVE---EVDVGEAEPRIICSGLVKYVPLD 151
V D LDIR G I+KA EA L ++ E+ + ++ +I +Y P +
Sbjct: 6 VIDDFEKLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITK----RYKP-E 60
Query: 152 FLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQ 196
L ++ V+ + N PR + G KS +L+ +V LL+P Q
Sbjct: 61 GLINKQVIAVVNFPPRRIAGFKSE-VLVLGGIPGQGDVVLLQPDQ 104
>pdb|1GD7|A Chain A, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|B Chain B, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|C Chain C, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|D Chain D, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities
Length = 109
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 101 DAANMLDIRVGRIIKAWRHEEADS-LYVEEVDVGEAEPRIICSGLVK-YVPLDFLQDRSV 158
+A +LD+RVGR+++A HE+A Y VD+G + + + + Y P D L R V
Sbjct: 5 EAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPED-LVGRLV 63
Query: 159 VVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEP 194
V NL + + G S ++L D A V LL P
Sbjct: 64 VCAVNLGAKRVAGFLSEVLVLGVPDEAG-RVVLLAP 98
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 100 KDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEP-RIICS 142
KD N++ VG I +H +AD L + +VD+GE EP +I+C
Sbjct: 40 KDIKNLV---VGYIQSKEKHPDADKLNICQVDIGEEEPVQIVCG 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,926,430
Number of Sequences: 62578
Number of extensions: 250661
Number of successful extensions: 544
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 14
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)