BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024253
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29465|SYYC_BOVIN Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4
Length = 528
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 109/170 (64%), Gaps = 14/170 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LDIRVG++I +H +ADSLYVE++DVGEAEPR + SGLV++VP + LQDR VVVL NLK
Sbjct: 368 LDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427
Query: 166 PRNMRGVKSNGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 220
P+ MRGVKS GMLL AS + + VE L+PP GS PGER++ E D+E +P
Sbjct: 428 PQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKP---- 483
Query: 221 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 270
KKK++E +Q K +A + T G+V +SLK NIS
Sbjct: 484 -----KKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVSCKSLKGGNIS 528
>sp|O54873|AIMP1_CRIGR Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1
Length = 359
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 115/184 (62%), Gaps = 19/184 (10%)
Query: 90 PAVEDKSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVP 149
P+ + K V+V + LD+R+GRI+ +H +ADSLYVEEVDVGEA PR + SGLV +VP
Sbjct: 190 PSADSKPVDV----SRLDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPRTVISGLVNHVP 245
Query: 150 LDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIWFGS- 208
LD +Q+R VV+L NLKP MRG+ S M++ AS + E VE+L PP GSVPG+RI F +
Sbjct: 246 LDQMQNRMVVLLCNLKPAKMRGILSQAMVMCAS--SPEKVEILAPPNGSVPGDRITFDAF 303
Query: 209 --QEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLK 265
+ DKE P KKKIWE +QP L T+A VA G G ++++
Sbjct: 304 PGEPDKELNP---------KKKIWEQIQPDLHTNAECVATYKGSPFEVKGKGVCRAQTMA 354
Query: 266 NANI 269
N+ I
Sbjct: 355 NSGI 358
>sp|Q5R8T5|SYYC_PONAB Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2
SV=3
Length = 528
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 109/170 (64%), Gaps = 14/170 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LDIRVG+II +H +ADSLYVE++DVGEAEPR + SGLV++VP + LQDR VVVL NLK
Sbjct: 368 LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427
Query: 166 PRNMRGVKSNGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 220
P+ MRGV+S GMLL AS + + VE L+PP GS PGER++ E D+E +P
Sbjct: 428 PQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKP---- 483
Query: 221 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 270
KKK++E +Q K +A + T G++ +SLK NIS
Sbjct: 484 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 528
>sp|Q4KM49|SYYC_RAT Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars
PE=2 SV=3
Length = 528
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 106/170 (62%), Gaps = 14/170 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LDIRVG+I+ +H +ADSLYVE++DVGEAEPR + SGLV++VP + LQDR VVVL NLK
Sbjct: 368 LDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427
Query: 166 PRNMRGVKSNGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 220
P+ MRGV S GMLL AS + VE L+PP GS PGER++ E D+E +P
Sbjct: 428 PQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKP---- 483
Query: 221 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 270
KKK++E +Q K VA + T G V +SLK NIS
Sbjct: 484 -----KKKVFEKLQADFKISDDCVAQWKQTNFMTKLGFVSCKSLKGGNIS 528
>sp|Q91WQ3|SYYC_MOUSE Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2
SV=3
Length = 528
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 106/170 (62%), Gaps = 14/170 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LDIRVG+I+ +H +ADSLYVE++DVGEAEPR + SGLV++VP + LQDR VVVL NLK
Sbjct: 368 LDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427
Query: 166 PRNMRGVKSNGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 220
P+ MRGV S GMLL AS + VE L+PP GS PGER++ E D+E +P
Sbjct: 428 PQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKP---- 483
Query: 221 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 270
KKK++E +Q K +A + T G V +SLK NIS
Sbjct: 484 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGFVSCKSLKGGNIS 528
>sp|P54577|SYYC_HUMAN Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1
SV=4
Length = 528
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 108/170 (63%), Gaps = 14/170 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LDIRVG+II +H +ADSLYVE++DVGEAEPR + SGLV++VP + LQDR VVVL NLK
Sbjct: 368 LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427
Query: 166 PRNMRGVKSNGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 220
P+ MRGV+S GMLL AS + + VE L+PP GS PGE ++ E D+E +P
Sbjct: 428 PQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKP---- 483
Query: 221 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 270
KKK++E +Q K +A + T G++ +SLK NIS
Sbjct: 484 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 528
>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Mus musculus GN=Aimp1 PE=1 SV=2
Length = 310
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 109/171 (63%), Gaps = 15/171 (8%)
Query: 103 ANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLA 162
A+ LD+R+G I+ A +H +ADSLYVEEVDVGEA PR + SGLV +VPL+ +Q+R VV+L
Sbjct: 150 ASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLC 209
Query: 163 NLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPA 219
NLKP MRGV S M++ AS + E VE+L PP GSVPG+RI F + + DKE P
Sbjct: 210 NLKPAKMRGVLSQAMVMCAS--SPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNP--- 264
Query: 220 SPNQVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 269
KKKIWE +QP L T+A VA G G ++++ N+ I
Sbjct: 265 ------KKKIWEQIQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGI 309
>sp|Q7ZX51|SYYC_XENLA Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2
SV=1
Length = 528
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 123/215 (57%), Gaps = 7/215 (3%)
Query: 57 LLRPHHPKTSSFCTSPITNANAETTTTSESPPRPAVEDKSVNVKDAANMLDIRVGRIIKA 116
LL P K +S ++N + +S P+ + ++ D + +LD+RVG+I+
Sbjct: 320 LLHPIREKFNSPEMKKLSNDAYPDASKQKSVPKGSTKNSGTEEIDPS-LLDLRVGKILSV 378
Query: 117 WRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSNG 176
+H +ADSLYVE VDVGEA PR + SGLV+YVP D L RSVV+L NLKP+ MRG++S G
Sbjct: 379 SQHPDADSLYVESVDVGEANPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQG 438
Query: 177 MLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQP 235
MLL AS + + VE L+PP GS PGERI+ E+ E + P KKK++E +Q
Sbjct: 439 MLLCASTEGEQKQVEPLDPPSGSAPGERIYIEGYENGEPE-GELKP----KKKVFEKLQV 493
Query: 236 HLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 270
+ L A T G+V ++L+ +I
Sbjct: 494 DFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSIG 528
>sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica
GN=Os06g0508700 PE=2 SV=2
Length = 801
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 104/164 (63%), Gaps = 6/164 (3%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LDIRVG I KA +H +ADSLYVEE+DVGE PR + SGLVK++PL+ +Q+R V VL NLK
Sbjct: 643 LDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNLK 702
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQ 225
P MRG+KS+ M+LAAS+ H VEL+EPP+ + GER+ F +P AS N
Sbjct: 703 PVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGY---SGEP-EASLN--A 756
Query: 226 KKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANI 269
K K WE + L ++ LVA + TSAG +S+ + I
Sbjct: 757 KSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEI 800
>sp|Q12904|AIMP1_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2
Length = 312
Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LD+R+G II A +H +ADSLYVEEVDVGE PR + SGLV +VPL+ +Q+R V++L NLK
Sbjct: 155 LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 214
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 222
P MRGV S M++ AS + E +E+L PP GSVPG+RI F + + DKE P
Sbjct: 215 PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 266
Query: 223 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 269
KKKIWE +QP L T+ VA G G ++++ N+ I
Sbjct: 267 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 311
>sp|Q6DIJ1|SYYC_XENTR Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars
PE=2 SV=1
Length = 528
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 105/168 (62%), Gaps = 6/168 (3%)
Query: 104 NMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLAN 163
++LD+RVG+I+ +H +ADSLYVE VDVGE PR + SGLV+YVP D L RSVV+L N
Sbjct: 366 SLLDLRVGKILSVRQHPDADSLYVESVDVGEENPRCVVSGLVQYVPSDQLLGRSVVLLCN 425
Query: 164 LKPRNMRGVKSNGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPN 222
LKP+ MRG++S GMLL AS + + VE L+PP GS PGERI+ E+ E + P
Sbjct: 426 LKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPTGSAPGERIYIEGYENGEPE-GELKP- 483
Query: 223 QVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 270
KKK++E +Q + L A T G+V ++L+ +IS
Sbjct: 484 ---KKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSIS 528
>sp|Q5ZJ08|SYYC_CHICK Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2
SV=1
Length = 527
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 103/168 (61%), Gaps = 10/168 (5%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LDIRVG+++ +H +ADSLYVE++DVGE EPR + SGLV++VP + LQDR VV+L NLK
Sbjct: 367 LDIRVGKVVSVEKHPDADSLYVEKIDVGEPEPRTVVSGLVQFVPKEQLQDRLVVLLCNLK 426
Query: 166 PRNMRGVKSNGMLLAASDAAH-ENVELLEPPQGSVPGERIWFGSQEDKE--NQPAPASPN 222
P+ MRGV+S GM+L AS VE L+PP GER++ ED E ++ P
Sbjct: 427 PQKMRGVESQGMVLCASSVGEPRQVEPLDPPAECCAGERVYVEGYEDGEPDDELKP---- 482
Query: 223 QVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 270
KKK++E +Q + +A E T G++ +SLK +IS
Sbjct: 483 ---KKKVFEKLQADFRISEDCIAQWKERNFLTKLGSISCKSLKGGSIS 527
>sp|Q6TGS6|SYYC_DANRE Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2
Length = 529
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 104/170 (61%), Gaps = 14/170 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LDIRVG++I +H +ADSLY+E++DVGE +PR + SGLV Y+ + LQDR VV+L NLK
Sbjct: 369 LDIRVGKVISVEKHPDADSLYLEKIDVGEEQPRTVVSGLVAYITEEQLQDRLVVLLCNLK 428
Query: 166 PRNMRGVKSNGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 220
P+ MRG++S M+L AS + VE L+PP+GS G+R++ E D E +P
Sbjct: 429 PQKMRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKP---- 484
Query: 221 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 270
KKK++E +Q LK VA E + T G + ++LK NIS
Sbjct: 485 -----KKKVFEKLQVDLKISGEFVAQWKEQNLMTKLGRITCKTLKGGNIS 529
>sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana
GN=At4g13780 PE=2 SV=1
Length = 797
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 101/166 (60%), Gaps = 10/166 (6%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LDIRVG+I+KA +H +AD+LYVEE+DVG E R + SGLVKY+PL+ +Q+R V VL NLK
Sbjct: 639 LDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLK 698
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQ 225
P MR + S M+LAAS + VEL+EPP+ + GER+ F E P+ V
Sbjct: 699 PAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFE--------GEPDDVL 750
Query: 226 --KKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANI 269
KKK+WE + L T +LVA + TSAG S+ N I
Sbjct: 751 NPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTI 796
>sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ARC1 PE=1 SV=2
Length = 376
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 96/146 (65%), Gaps = 10/146 (6%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAE-PRIICSGLVKYVPLDFLQDRSVVVLANL 164
+D RVG I KA +H +ADSLYV +DVG+ E PR +CSGLVK+ PLD +Q+R VVV+ NL
Sbjct: 209 IDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKHFPLDAMQERYVVVVCNL 268
Query: 165 KPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQV 224
KP NMRG+KS M+L S+ + VE +EPP+ S G++++F D+ AP Q+
Sbjct: 269 KPVNMRGIKSTAMVLCGSND--DKVEFVEPPKDSKAGDKVFFEGFGDE----APM--KQL 320
Query: 225 Q-KKKIWELVQPHLKTDASLVAMLGE 249
KKKIWE +QPH T+ L + +
Sbjct: 321 NPKKKIWEHLQPHFTTNDGLEVIFKD 346
>sp|Q9P6K7|YLF4_SCHPO Uncharacterized tRNA-binding protein C30C2.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC30C2.04 PE=4 SV=1
Length = 450
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 88/143 (61%), Gaps = 6/143 (4%)
Query: 104 NMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAE-PRIICSGLVKYVPLDFLQDRSVVVLA 162
+M+D R+G I KA +H ADSLYV + G+AE PR +CSGLVKY+PL+ +Q R V+V+A
Sbjct: 280 SMIDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGLVKYIPLEQMQQRKVIVVA 339
Query: 163 NLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPN 222
NLKP NMR VKS M+ AS VE + PP+ + G+R+ F D E A +P
Sbjct: 340 NLKPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEGF-DTEEPEAQLNP- 397
Query: 223 QVQKKKIWELVQPHLKTDASLVA 245
K+KIWE +QP + L+
Sbjct: 398 ---KRKIWEAIQPGFTSGEDLIC 417
>sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=mrs-1 PE=2 SV=1
Length = 917
Score = 120 bits (302), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 104/168 (61%), Gaps = 15/168 (8%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LD+RVGRIIK +H +AD+LYVE++DVGE+ PR + SGLV++VPLD +Q+R VVVL NLK
Sbjct: 760 LDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQMQNRLVVVLCNLK 819
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERIW---FGSQEDKENQPAPASPN 222
P MRGV+S M++ AS + + VE++E P S PG + + + D++ P
Sbjct: 820 PAKMRGVESRAMVMCAS--SPDKVEIMEVPADSKPGTPVVCPPYTHRPDEQLNP------ 871
Query: 223 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 269
KKKIWE V LK A A G+ L+ S + + +L+ ++
Sbjct: 872 ---KKKIWETVAEDLKVSAEGFAEWKGQPLLIGSESKMTAPTLRGVHV 916
>sp|B6YUN0|SYM_THEON Methionine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=metG PE=3 SV=1
Length = 733
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LD+RVG+I+ H AD LYV +VD+G E R + +GL KY D L +R VV++ANL+
Sbjct: 637 LDLRVGKIVDVQDHPNADKLYVVKVDLGN-EVRQLVAGLKKYYSKDDLLNRYVVIIANLE 695
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
P+ +RG++S GMLLAA D ENV LL P + G RI
Sbjct: 696 PKKLRGIESQGMLLAADDG--ENVALLMPDKEVKLGARI 732
>sp|Q73NT9|SYM_TREDE Methionine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=metG PE=3 SV=1
Length = 793
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 108 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPR 167
++ +II RH +AD LY+E++D G E R I SGLV ++ D + ++V++ NLKPR
Sbjct: 628 LKTAKIISVERHPDADKLYIEKLDDGSGEERTILSGLVPFLKEDEILGKTVIIADNLKPR 687
Query: 168 NMRGVKSNGMLLAAS---DAAHENVELLEPPQGSVPG 201
MRG++S GMLLAAS + E+VELL+ P + PG
Sbjct: 688 KMRGIESKGMLLAASWYDEEEKEHVELLQAPW-AAPG 723
>sp|O58721|SYM_PYRHO Methionine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=metG PE=3 SV=1
Length = 723
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 97 VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDR 156
V +D A LD+RVG+II+ H AD LY+ +VD+G+ E R + +GL KY + L ++
Sbjct: 619 VKFEDFAK-LDLRVGKIIEVKDHPNADKLYIVKVDLGK-EVRTLVAGLKKYYKPEELLNK 676
Query: 157 SVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
V+++ANL+P+ +RGV+S GMLLAA D ENV LL P + G ++
Sbjct: 677 YVIIVANLEPKKLRGVESQGMLLAADDG--ENVALLMPDKEVKLGAKV 722
>sp|Q9V011|SYM_PYRAB Methionine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=metG PE=1 SV=1
Length = 722
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 97 VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDR 156
V D A LD+RVG+II+ H AD LYV +VD+G+ E R + +GL KY + L +R
Sbjct: 618 VKFDDFAK-LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNR 675
Query: 157 SVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
VVV+ANL+P+ +RG+ S GMLLAA D E V LL P + G ++
Sbjct: 676 YVVVVANLEPKKLRGIGSQGMLLAADDG--ERVALLMPDKEVKLGAKV 721
>sp|Q8U221|SYM_PYRFU Methionine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=metG PE=3 SV=1
Length = 724
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
+D+R+G+I++ H AD LYV +VD+G E R + +GL KY + L +R VV++ANL+
Sbjct: 628 IDLRIGKIVEVQDHPNADKLYVVKVDLG-GEIRTLVAGLKKYYKPEELLNRYVVIVANLE 686
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
P+ +RGV+S GMLLAA D E V LL P + G ++
Sbjct: 687 PKKLRGVESQGMLLAADDG--EKVALLMPDKEVKLGAKV 723
>sp|Q5JDZ7|SYM_PYRKO Methionine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=metG PE=3 SV=1
Length = 741
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 101 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVV 160
D LD+RVG+II+ H AD LYV +VD+G+ E R + +GL KY + L VV+
Sbjct: 640 DEFAKLDLRVGKIIEVNDHPNADRLYVVKVDLGD-EVRQLVAGLKKYYKPEELLGHYVVI 698
Query: 161 LANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
+ANL+P+ +RGV+S GMLLAA D E V LL P + G RI
Sbjct: 699 IANLEPKKLRGVESQGMLLAADDG--ERVALLMPDKEVKLGARI 740
>sp|O83776|SYM_TREPA Methionine--tRNA ligase OS=Treponema pallidum (strain Nichols)
GN=metG PE=3 SV=1
Length = 811
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 67/99 (67%), Gaps = 4/99 (4%)
Query: 108 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPR 167
++V R+++ RH AD L+VE +D G R+I SGLV Y+ D L+ V+++ NL+PR
Sbjct: 654 LKVARVLQVERHPNADMLFVETLDDGSGVERVIVSGLVPYMAADALRGAHVLIVDNLQPR 713
Query: 168 NMRGVKSNGMLLAAS--DA-AHENVELLEPPQGSVPGER 203
++RGV+S GMLLAA DA + +EL++ P ++PGER
Sbjct: 714 SLRGVRSCGMLLAAEYVDAQGTKAIELVQAPW-ALPGER 751
>sp|Q46F18|SYM_METBF Methionine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=metG PE=3 SV=1
Length = 710
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 89 RPAVEDKS----VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGL 144
+P E+K + +D A LDIRVG+++ A +++ L EVD+GE + R + +GL
Sbjct: 592 KPREEEKETLPMIEYEDFAK-LDIRVGKVLLAEPVKKSKKLIRIEVDIGEEKTRQLVAGL 650
Query: 145 VKYVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
Y + L +SV+VLANLKP + GVKSNGM+LAA D E V L P + PG RI
Sbjct: 651 SSYYAPEELVGKSVIVLANLKPAKLCGVKSNGMMLAADDGG-EIVSALMPDKEIKPGSRI 709
>sp|Q8EDX2|SYM_SHEON Methionine--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=metG PE=3 SV=1
Length = 676
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 77 NAETTTTSESPPRPAVED---KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVG 133
N + TT E+P P D ++N +D A +D+R+ RI+KA EAD L ++D+G
Sbjct: 548 NLQATTEPEAPKGPLATDPISDTINYEDFAK-IDLRIARIVKAEHVAEADKLLKLQLDIG 606
Query: 134 EAEPRIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELL 192
E R + +G+ Y P D L+ + V++ANL PR MR S GM+LAA ++ +L
Sbjct: 607 -GETRQVFAGIKSAYSPED-LEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-SDLWIL 663
Query: 193 EPPQGSVPGERI 204
EP +G+ PG R+
Sbjct: 664 EPHEGAQPGMRV 675
>sp|Q0HVY2|SYM_SHESR Methionine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=metG
PE=3 SV=1
Length = 676
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 77 NAETTTTSESPPRPAVED---KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVG 133
N + T+ E+P P D ++N +D A +D+R+ RI+KA EAD L ++D+G
Sbjct: 548 NLQATSEPEAPKGPLASDPISDTINYEDFAK-IDLRIARIVKAEHVAEADKLLKLQLDIG 606
Query: 134 EAEPRIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELL 192
E R + +G+ Y P D L+ + V++ANL PR MR S GM+LAA ++ +L
Sbjct: 607 -GETRQVFAGIKSAYSPED-LEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-SDLWIL 663
Query: 193 EPPQGSVPGERI 204
EP +G+ PG R+
Sbjct: 664 EPHEGAQPGMRV 675
>sp|A0KW24|SYM_SHESA Methionine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=metG
PE=3 SV=1
Length = 676
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 77 NAETTTTSESPPRPAVED---KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVG 133
N + T+ E+P P D ++N +D A +D+R+ RI+KA EAD L ++D+G
Sbjct: 548 NLQATSEPEAPKGPLATDPISDTINFEDFAK-IDLRIARIVKAEHVAEADKLLKLQLDIG 606
Query: 134 EAEPRIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELL 192
E R + +G+ Y P D L+ + V++ANL PR MR S GM+LAA ++ +L
Sbjct: 607 -GETRQVFAGIKSAYSPED-LEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-SDLWIL 663
Query: 193 EPPQGSVPGERI 204
EP +G+ PG R+
Sbjct: 664 EPHEGAQPGMRV 675
>sp|Q0HJN6|SYM_SHESM Methionine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=metG
PE=3 SV=1
Length = 676
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Query: 77 NAETTTTSESPPRPAVED---KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVG 133
N + T+ E+P P D ++N D A +D+R+ RI+KA EAD L ++D+G
Sbjct: 548 NLQATSEPEAPKGPLATDPISDTINFDDFAK-IDLRIARIVKAEHVAEADKLLKLQLDIG 606
Query: 134 EAEPRIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELL 192
E R + +G+ Y P D L+ + V++ANL PR MR S GM+LAA ++ +L
Sbjct: 607 -GETRQVFAGIKSAYSPED-LEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-SDLWIL 663
Query: 193 EPPQGSVPGERI 204
EP +G+ PG R+
Sbjct: 664 EPHEGAQPGMRV 675
>sp|A6WP56|SYM_SHEB8 Methionine--tRNA ligase OS=Shewanella baltica (strain OS185)
GN=metG PE=3 SV=1
Length = 689
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
Query: 71 SPITNANAETTTTSESPPRPAVED---KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYV 127
+P T A +T S P V+D +++N D A +D+R+ RIIKA +AD L
Sbjct: 555 APKTAAPEKTAEASSVSSEPLVDDPISETINFDDFAK-IDLRIARIIKAEHVADADKLLK 613
Query: 128 EEVDVGEAEPRIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAH 186
++D+G E R + +G+ Y P D L+ + V++ANL PR MR S GM+LAA
Sbjct: 614 LQLDIG-GETRQVFAGIKSAYSPED-LEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG- 670
Query: 187 ENVELLEPPQGSVPGERI 204
++ +LEP +G+ PG R+
Sbjct: 671 SDLWILEPHEGAQPGMRV 688
>sp|Q8TIU5|SYM_METAC Methionine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=metG PE=3 SV=1
Length = 712
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 97 VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDR 156
+ +D A LDIRVG+++ +++ L EVD+GE +PR + +G+ Y + L +
Sbjct: 606 IEYEDFAK-LDIRVGKVLFVEPVKKSRKLLRVEVDIGEEKPRQLVAGMASYYTSEELVGK 664
Query: 157 SVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
VVVLANLKP + GV+SNGM+LAA D V L P + PG RI
Sbjct: 665 YVVVLANLKPAKLCGVESNGMMLAADDGG-AIVAALMPDKEIKPGSRI 711
>sp|B8E958|SYM_SHEB2 Methionine--tRNA ligase OS=Shewanella baltica (strain OS223)
GN=metG PE=3 SV=1
Length = 689
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
Query: 71 SPITNANAETTTTSESPPRPAVED---KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYV 127
+P T A +T S P V+D +++N D A +D+R+ RI+KA +AD L
Sbjct: 555 APKTAAPEKTAKASSVSSEPLVDDPISETINFDDFAK-IDLRIARIVKAEHVADADKLLK 613
Query: 128 EEVDVGEAEPRIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAH 186
++D+G E R + +G+ Y P D L+ + V++ANL PR MR S GM+LAA
Sbjct: 614 LQLDIG-GETRQVFAGIKSAYSPED-LEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG- 670
Query: 187 ENVELLEPPQGSVPGERI 204
++ +LEP +G+ PG R+
Sbjct: 671 SDLWILEPHEGAQPGMRV 688
>sp|A1RIY0|SYM_SHESW Methionine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=metG
PE=3 SV=1
Length = 689
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 8/137 (5%)
Query: 72 PITNANAETTTTSESPPRPAVED---KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVE 128
P T +T +S P V+D +++N D A +D+R+ RI+KA EAD L
Sbjct: 556 PKTAKPEKTVESSNVSSEPLVDDPISETINFDDFAK-IDLRIARIVKAEHVAEADKLLKL 614
Query: 129 EVDVGEAEPRIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHE 187
++D+G E R + +G+ Y P D L+ + V++ANL PR MR S GM+LAA
Sbjct: 615 QLDIG-GETRQVFAGIKSAYSPED-LEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-S 671
Query: 188 NVELLEPPQGSVPGERI 204
++ +LEP +G+ PG R+
Sbjct: 672 DLWILEPHEGAQPGMRV 688
>sp|A4Y7K8|SYM_SHEPC Methionine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=metG PE=3 SV=1
Length = 689
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 8/137 (5%)
Query: 72 PITNANAETTTTSESPPRPAVED---KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVE 128
P T +T +S P V+D +++N D A +D+R+ RI+KA EAD L
Sbjct: 556 PKTAKPEKTVESSNVSSEPLVDDPISETINFDDFAK-IDLRIARIVKAEHVAEADKLLKL 614
Query: 129 EVDVGEAEPRIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHE 187
++D+G E R + +G+ Y P D L+ + V++ANL PR MR S GM+LAA
Sbjct: 615 QLDIG-GETRQVFAGIKSAYSPED-LEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-S 671
Query: 188 NVELLEPPQGSVPGERI 204
++ +LEP +G+ PG R+
Sbjct: 672 DLWILEPHEGAQPGMRV 688
>sp|A1WBH1|SYM_ACISJ Methionine--tRNA ligase OS=Acidovorax sp. (strain JS42) GN=metG
PE=3 SV=1
Length = 688
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 15/131 (11%)
Query: 87 PPRPAVED---------KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEP 137
PP PAVE ++ + D A +D+R+ +I+K E + L +DVGE +
Sbjct: 559 PPAPAVEKVIPGGEEIAPTITIDDFAK-VDLRIAKIVKCEAVEGSTKLLRLTLDVGEGQT 617
Query: 138 RIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDA---AHENVELLE 193
R + SG+ Y P D LQ + V++ANL PR M+ S GM+LAAS A AH + +LE
Sbjct: 618 RNVFSGIASMYKPKD-LQGKLTVMVANLAPRKMKFGLSEGMVLAASHADEKAHPGIFVLE 676
Query: 194 PPQGSVPGERI 204
P G+ PG RI
Sbjct: 677 PFPGAQPGMRI 687
>sp|Q8PYJ4|SYM_METMA Methionine--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=metG PE=3 SV=2
Length = 715
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%)
Query: 64 KTSSFCTSPITNANAETTTTSESPPRPAVEDKSVNVKDAANMLDIRVGRIIKAWRHEEAD 123
K+ S + A+ +T + + + VE V + LDIRVG+++ +++
Sbjct: 575 KSEGMGPSEASKASEKTVDVATAEEKVQVETLPVIDYEDFAKLDIRVGKVLLVEPVKKSK 634
Query: 124 SLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASD 183
L EVD+GE +PR + +G+ Y + L +SV+VLANLKP + GV+SNGM+LAA D
Sbjct: 635 KLLRIEVDIGEEKPRQLVAGMASYYTPEELVGKSVIVLANLKPAKLCGVESNGMMLAADD 694
Query: 184 AA 185
Sbjct: 695 GG 696
>sp|Q1D8K2|SYM_MYXXD Methionine--tRNA ligase OS=Myxococcus xanthus (strain DK 1622)
GN=metG PE=3 SV=1
Length = 703
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 97 VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDR 156
+ D A ++ ++ G+++ A + ++AD L VDVGE PR I SG+ + + L R
Sbjct: 598 IEYDDFAKVV-LKAGKVLAAEKVQKADKLLKLTVDVGEGSPRTIVSGIAEAFAPEALTGR 656
Query: 157 SVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSV-PGERI 204
+VVV+ANLKPR ++G++S GMLL A E + LL+P G V PG +
Sbjct: 657 NVVVVANLKPRKLKGIESRGMLLTAGPGGKE-LSLLDP--GDVAPGSEV 702
>sp|Q6FE36|SYM_ACIAD Methionine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=metG
PE=3 SV=1
Length = 685
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
+D+RV + +A E +D L +DVGEAEPR + SG+ ++ + L+ + VV++ANL
Sbjct: 588 VDLRVALVQEAATVEGSDKLLQLTLDVGEAEPRNVFSGIREFYQPEDLKGKLVVMVANLA 647
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
PR MR SNGM+LAA + + V ++ P G+ PG+++
Sbjct: 648 PRKMRFGISNGMVLAAGNG--DGVWVISPDSGAKPGDKV 684
>sp|Q5WST1|SYM_LEGPL Methionine--tRNA ligase OS=Legionella pneumophila (strain Lens)
GN=metG PE=3 SV=1
Length = 670
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 77/126 (61%), Gaps = 8/126 (6%)
Query: 80 TTTTSESPPRPAVEDKS-VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPR 138
TT T E+ P VED + ++++D A +D+R+ +I+ A E AD L +D+G+A+ +
Sbjct: 551 TTQTKENTP---VEDSNLISIEDFAK-VDLRIAKIVNAEPVEGADKLMRLILDLGDAQKQ 606
Query: 139 IICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGS 198
+ +G+ K + L R V++ANL+PR MR S GM+LAA D + + LL+P G+
Sbjct: 607 VF-AGIKKAYDAEELIGRLTVMVANLEPRTMRFGVSEGMVLAAGDG--QGIYLLQPDAGA 663
Query: 199 VPGERI 204
+PG ++
Sbjct: 664 LPGMKV 669
>sp|B1XWM2|SYM_LEPCP Methionine--tRNA ligase OS=Leptothrix cholodnii (strain ATCC 51168
/ LMG 8142 / SP-6) GN=metG PE=3 SV=1
Length = 689
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 90 PAVEDKSVNVK-DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVK-Y 147
P ED + ++ D + +D+R+ +I+KA E +D L +DVGE R + SG+ Y
Sbjct: 570 PGGEDIAAEIRIDDFSKVDLRIAKIVKAEAVEGSDKLLRLTLDVGEGRTRNVFSGIKGAY 629
Query: 148 VPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDA---AHENVELLEPPQGSVPGERI 204
P D L+ + +V++ANL PR M+ S GM+LAAS A A + +LEP G+ PG R+
Sbjct: 630 KPED-LEGKFIVMVANLAPRKMKFGISEGMVLAASHADEKAQPGLFVLEPHAGATPGMRV 688
>sp|P42589|YGJH_ECOLI tRNA-binding protein YgjH OS=Escherichia coli (strain K12) GN=ygjH
PE=1 SV=1
Length = 110
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
L++RVG+I++ RHE AD LY+ +VDVG+ + + S LV Y + L ++VVVL NL+
Sbjct: 12 LEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTS-LVPYYSEEELMGKTVVVLCNLQ 70
Query: 166 PRNMRGVKSNGMLLAA-SDAAHENVELLEPPQGSVPGERI 204
MRG S MLL A +D E+V LL P + G R+
Sbjct: 71 KAKMRGETSECMLLCAETDDGSESV-LLTPERMMPAGVRV 109
>sp|B9MEX0|SYM_ACIET Methionine--tRNA ligase OS=Acidovorax ebreus (strain TPSY) GN=metG
PE=3 SV=1
Length = 688
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 15/131 (11%)
Query: 87 PPRPAVED---------KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEP 137
PP PAVE ++ + D A +D+R+ +I+K E + L +D GE +
Sbjct: 559 PPAPAVEKVIPGGEEIAPTITIDDFAK-VDLRIAKIVKCEAVEGSTKLLRLTLDAGEGQT 617
Query: 138 RIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDA---AHENVELLE 193
R + SG+ Y P D LQ + V++ANL PR M+ S GM+LAAS A AH + +LE
Sbjct: 618 RNVFSGIASMYKPED-LQGKLTVMVANLAPRKMKFGLSEGMVLAASHADEKAHPGIFVLE 676
Query: 194 PPQGSVPGERI 204
P G+ PG RI
Sbjct: 677 PFPGAQPGMRI 687
>sp|Q74MZ1|SYM_NANEQ Methionine--tRNA ligase OS=Nanoarchaeum equitans (strain Kin4-M)
GN=metG PE=3 SV=1
Length = 776
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LD+RVG+II H AD LY+ +V +G + + + GL +Y + L + VV++ NLK
Sbjct: 680 LDMRVGKIIDVQDHPNADKLYIIKVSLGNKQ-KTLVGGLKQYYKKEELIGKYVVLINNLK 738
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQ 196
P+ +RG+ S GMLLAA D + V LL P +
Sbjct: 739 PKQLRGITSEGMLLAADDG--KEVALLMPDK 767
>sp|A9L4F6|SYM_SHEB9 Methionine--tRNA ligase OS=Shewanella baltica (strain OS195)
GN=metG PE=3 SV=1
Length = 689
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 8/138 (5%)
Query: 71 SPITNANAETTTTSESPPRPAVED---KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYV 127
+P T A + S P V D +++N D A +D+R+ RI+KA +AD L
Sbjct: 555 APKTAAPEKIAKASSVSSEPLVSDPISETINFDDFAK-IDLRIARIVKAEHVADADKLLK 613
Query: 128 EEVDVGEAEPRIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAH 186
++D+G E R + +G+ Y P D L+ + V++ANL PR MR S GM+LAA
Sbjct: 614 LQLDIG-GETRQVFAGIKSAYSPED-LEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG- 670
Query: 187 ENVELLEPPQGSVPGERI 204
++ +LEP +G+ PG R+
Sbjct: 671 SDLWILEPHEGAQPGMRV 688
>sp|A3D5E5|SYM_SHEB5 Methionine--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=metG PE=3 SV=1
Length = 689
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 8/138 (5%)
Query: 71 SPITNANAETTTTSESPPRPAVED---KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYV 127
+P T A + S P V D +++N D A +D+R+ RI+KA +AD L
Sbjct: 555 APKTAAPEKIAKASSVSSEPLVSDPISETINFDDFAK-IDLRIARIVKAEHVADADKLLK 613
Query: 128 EEVDVGEAEPRIICSGLVK-YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAH 186
++D+G E R + +G+ Y P D L+ + V++ANL PR MR S GM+LAA
Sbjct: 614 LQLDIG-GETRQVFAGIKSAYSPED-LEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG- 670
Query: 187 ENVELLEPPQGSVPGERI 204
++ +LEP +G+ PG R+
Sbjct: 671 SDLWILEPHEGAQPGMRV 688
>sp|Q9RUF3|SYM_DEIRA Methionine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=metG PE=3 SV=1
Length = 681
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 59 RPHHPKTSSFCTSPITNANAETTTTSESPPRPAVEDKSVNVKDAANMLDIRVGRIIKAWR 118
+P P+ + A A+TT PA D +++ D A +D+R+ ++
Sbjct: 538 KPPKPQAKKEKKTVTDTAPAKTTEQKPEAAAPAQNDGLISIDDFAK-IDLRIAEVVACEA 596
Query: 119 HEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSNGML 178
E+AD L V +G+ E R + SG+ K+ + L R VV++ANLKP +RG++S GM+
Sbjct: 597 VEKADKLLKLTVKLGD-ETRTVVSGIRKWYEPEALVGRKVVLVANLKPAKLRGIESQGMI 655
Query: 179 LAASDAAHENVEL----LEPPQGS 198
LAA D A N++L L+ P G+
Sbjct: 656 LAAEDDAG-NLDLVGTELDLPSGT 678
>sp|Q8XWT9|SYM_RALSO Methionine--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000)
GN=metG PE=3 SV=1
Length = 688
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 90 PAVE--DKSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVK- 146
PAVE +++ + D A +D+RV +I+ R E ++ L +DVGE + R + SG+
Sbjct: 569 PAVEPMAETIAIDDFAK-IDLRVAKIVACQRVEGSNKLLQLTLDVGEGKTRNVFSGIQSA 627
Query: 147 YVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAASDA---AHENVELLEPPQGSVPGER 203
Y P D + +V+V ANL PR M+ S GM+LAAS A A + +LEP G+VPG R
Sbjct: 628 YAPEDLVGKLTVMV-ANLAPRKMKFGMSEGMVLAASAADEKAQPGLYILEPHAGAVPGMR 686
Query: 204 I 204
+
Sbjct: 687 V 687
>sp|O26687|SYM_METTH Methionine--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=metG PE=3 SV=1
Length = 651
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 93 EDKSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDF 152
E ++V + D M DIRVG I A R E +D L +DVGE E +++ KY P D
Sbjct: 546 EVETVTIDDFTTM-DIRVGVIRSAERIEGSDKLLKLIIDVGEREMQVVAGLAEKYSPED- 603
Query: 153 LQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
L +R + VL NLKP + GVKS GM+LA E++ +L+P V GERI
Sbjct: 604 LVERKITVLVNLKPAKLFGVKSEGMVLATG----ESLNILDPGDAEV-GERI 650
>sp|A2SRE2|SYM_METLZ Methionine--tRNA ligase OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=metG PE=3 SV=1
Length = 673
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 92 VEDKSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLD 151
+ ++ + + D A LD+RVGR++KA R + L +VD+G E R I SG+ +
Sbjct: 566 ISEEIITIDDVAK-LDLRVGRVVKAERVPKTTKLLRLQVDIG-TEVRQIVSGIADVYTPE 623
Query: 152 FLQDRSVVVLANLKPRNMRGVKSNGMLLAASDAAHENVELLEPPQGS 198
+ D+ ++V+ NLKP RG +SNGML AA + A V L + P+G+
Sbjct: 624 EMVDKKIIVVVNLKPAKFRGEESNGMLFAAGEEASLLVPLKDVPEGT 670
>sp|Q9HSA4|SYM_HALSA Methionine--tRNA ligase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=metG PE=3 SV=1
Length = 689
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLK 165
LD+RVG +++A E AD L EVD+G E R I +G+ + LD L VVV+AN++
Sbjct: 595 LDLRVGEVVEAEGIEGADDLARLEVDIGH-EVRQIVAGIKQLHDLDALPGTRVVVVANME 653
Query: 166 PRNMRGVKSNGMLLAASDAAHENVELLEPPQGSVPGERI 204
P + GV+SNGM+LAA E+ +LL + S PG ++
Sbjct: 654 PSELFGVESNGMVLAAG----EDADLLTTHEDSEPGTKV 688
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,206,643
Number of Sequences: 539616
Number of extensions: 3848416
Number of successful extensions: 9927
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 9051
Number of HSP's gapped (non-prelim): 642
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)