Query 024253
Match_columns 270
No_of_seqs 235 out of 1329
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 05:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ntg_A Tyrrs, tyrosyl-tRNA syn 100.0 2.9E-50 9.8E-55 348.5 17.5 165 100-270 5-170 (172)
2 1fl0_A Endothelial-monocyte ac 100.0 4E-47 1.4E-51 328.7 14.1 161 101-270 2-163 (171)
3 3ers_X TRNA-binding protein YG 100.0 6E-36 2.1E-40 245.0 9.6 113 95-209 2-114 (118)
4 1gd7_A CSAA protein; oligonucl 100.0 9E-35 3.1E-39 234.8 7.8 107 96-204 1-108 (109)
5 3g48_A Chaperone CSAA; structu 100.0 1.6E-34 5.5E-39 234.6 6.9 108 95-204 3-111 (112)
6 2nzh_A Protein CSAA; beta barr 100.0 1.5E-34 5.1E-39 234.8 5.1 109 95-205 3-113 (113)
7 1mkh_A Metrs;, C-terminal doma 100.0 6.4E-34 2.2E-38 229.0 8.7 105 96-204 2-106 (107)
8 2q2i_A AGR_C_4014P, secretion 100.0 4.4E-34 1.5E-38 233.0 7.5 107 96-204 7-115 (116)
9 2cwp_A Metrs related protein; 100.0 1.6E-33 5.6E-38 228.4 10.8 106 96-204 6-111 (112)
10 1pyb_A Methionyl-tRNA syntheta 100.0 1.1E-33 3.8E-38 228.9 7.8 107 94-204 4-110 (111)
11 2q2h_A AGR_C_4014P, secretion 100.0 1.8E-33 6.1E-38 234.1 8.1 107 96-204 22-130 (131)
12 1pxf_A Hypothetical protein YG 100.0 1.8E-32 6.3E-37 221.9 6.4 108 96-205 3-110 (111)
13 1rqg_A Methionyl-tRNA syntheta 99.9 8.1E-27 2.8E-31 236.2 0.0 105 96-204 617-721 (722)
14 3bu2_A Putative tRNA-binding p 99.9 4.6E-25 1.6E-29 194.8 10.2 91 106-204 91-196 (199)
15 2e8g_A Hypothetical protein PH 99.9 1.7E-25 6E-30 202.4 7.3 110 100-235 131-240 (241)
16 3pco_B Phenylalanyl-tRNA synth 99.8 3.2E-21 1.1E-25 197.9 10.2 99 99-204 35-147 (795)
17 1b7y_B Phers, protein (phenyla 99.8 1.2E-19 4E-24 186.1 5.1 96 107-207 44-151 (785)
18 2rhq_B Phenylalanyl-tRNA synth 99.7 1.5E-18 5E-23 178.1 8.1 95 99-204 35-149 (795)
19 3qr8_A GPV, baseplate assembly 48.7 34 0.0012 29.2 6.2 70 99-181 7-84 (211)
20 2ot2_A Hydrogenase isoenzymes 29.3 96 0.0033 23.7 5.3 45 109-161 5-51 (90)
21 2z1c_A Hydrogenase expression/ 24.4 1.2E+02 0.0041 22.4 4.8 40 110-161 6-45 (75)
22 3d3r_A Hydrogenase assembly ch 23.3 1.8E+02 0.0062 22.8 5.9 45 109-162 26-70 (103)
23 3kf6_A Protein STN1; OB fold, 21.8 1.5E+02 0.005 24.6 5.5 32 109-143 52-83 (159)
No 1
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4
Probab=100.00 E-value=2.9e-50 Score=348.53 Aligned_cols=165 Identities=49% Similarity=0.756 Sum_probs=150.2
Q ss_pred cccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecceEEe
Q 024253 100 KDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLL 179 (270)
Q Consensus 100 ~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~SeGMLL 179 (270)
.+|. ++|||||+|+++++||+|||||+++||+|++++|||+||++|+|++|||+|++|++++||||+||||+.||||||
T Consensus 5 ~df~-kl~irVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIvsG~~n~~~~eel~G~~Vvvl~nlkp~klrGv~S~GMvL 83 (172)
T 1ntg_A 5 VIPS-RLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLL 83 (172)
T ss_dssp CCGG-GSCEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEECCBCCEEETTEEECCEEC
T ss_pred cCcc-EeCEEEEEEEEEEECCCCCccEEEEEEeCCCcEEEEEECCCCCCChHHHCCCEEEEEEeEcceeecceecCCEEe
Confidence 4665 599999999999999999999999999998779999999999999999999999999999999999999999966
Q ss_pred eec-cCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeeeeecCcc
Q 024253 180 AAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGA 258 (270)
Q Consensus 180 ~as-e~~~~~VelL~PP~~a~~G~rV~f~~~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~~ts~G~ 258 (270)
|+. ++++++++|+.||+++++|++++|+|++. .+|+ +.+++|||+||++||+|+||++|+|+|+|.+|+|++|+
T Consensus 84 cs~~e~~~~~v~il~~~~~~~~G~~v~~~g~~~--~~p~---~~l~~kkk~~e~~~~~l~t~~~~~a~~k~~~~~~~~g~ 158 (172)
T 1ntg_A 84 CASIEGINRQVEPLDPPAGSAPGEHVFVKGYEK--GQPD---EELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGS 158 (172)
T ss_dssp EEEEESSSEEEEECBCCBTCCTTCEEEETTCSS--CCCC---SSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEETTEE
T ss_pred EecccccCCCeEEEECCCCCCCCCEEEeCCcCC--CCCc---cccCcchhhHHhhCCCcEECCCCEEEECCEEEEeCCCC
Confidence 655 44456899999999999999999999853 2343 35789999999999999999999999999999999999
Q ss_pred eEeccCCCcccC
Q 024253 259 VMSRSLKNANIS 270 (270)
Q Consensus 259 ~~~~sl~n~~Is 270 (270)
|++++|+|+.|+
T Consensus 159 ~~~~~l~~~~i~ 170 (172)
T 1ntg_A 159 ISCKSLKGGNIS 170 (172)
T ss_dssp CBCSSCTTCEEE
T ss_pred EEeeecCCCEEE
Confidence 999999999985
No 2
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=100.00 E-value=4e-47 Score=328.67 Aligned_cols=161 Identities=47% Similarity=0.779 Sum_probs=146.1
Q ss_pred ccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecceEEee
Q 024253 101 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLA 180 (270)
Q Consensus 101 ~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~SeGMLL~ 180 (270)
||. ++|||||+|+++++||+|||||+++||+|++++|||+||+.|+|++|+|.|+++++++||||+||||+.|||||||
T Consensus 2 df~-kldirVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIV~G~~n~v~~a~lggk~v~~~~nlkp~klrGv~SeGMvLc 80 (171)
T 1fl0_A 2 DVS-RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMC 80 (171)
T ss_dssp CGG-GSCEEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECE
T ss_pred Ccc-EEeEEEEEEEEEEECCCCCccEEEEEEcCCCcEEEEEECCCceEcchhcCCEEEcCceEEeeEEEccEeccCEEEE
Confidence 565 5999999999999999999999999999987799999999999999999999999899999999999999999777
Q ss_pred eccCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeeee-ecCcce
Q 024253 181 ASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQ-TSAGAV 259 (270)
Q Consensus 181 ase~~~~~VelL~PP~~a~~G~rV~f~~~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~~-ts~G~~ 259 (270)
+.++ +++.||.||+++++|++++|+|++. +|+ +.+++|||+||++||+|+||++|+|+|+|.+|+ |++|+|
T Consensus 81 s~~~--~~~~il~~~~~~~~G~~v~~~g~~~---~p~---~~l~~kkk~~e~~~~~l~t~~~~va~~k~~~~~~~~~g~~ 152 (171)
T 1fl0_A 81 ASSP--EKIEILAPPNGSVPGDRITFDAFPG---EPD---KELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVC 152 (171)
T ss_dssp EEET--TEEEECBCCTTCCTTCBCCCTTSCC---CCC---SSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETTTEEC
T ss_pred EecC--CCEEEEECCCCCCCCCEEEeCCCCC---CCc---cccCchhhhHHhhCCCcEECCCeEEEECCEEEEECCCccE
Confidence 7653 4588999999999999999999863 343 246789999999999999999999999999986 577999
Q ss_pred EeccCCCcccC
Q 024253 260 MSRSLKNANIS 270 (270)
Q Consensus 260 ~~~sl~n~~Is 270 (270)
++++|+|+.|+
T Consensus 153 ~~~~l~~~~~~ 163 (171)
T 1fl0_A 153 RAQTMSNSGIK 163 (171)
T ss_dssp BCSSCCSCEEC
T ss_pred EeeecCCCeEe
Confidence 99999999874
No 3
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=100.00 E-value=6e-36 Score=245.04 Aligned_cols=113 Identities=37% Similarity=0.551 Sum_probs=104.0
Q ss_pred CceeecccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceec
Q 024253 95 KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKS 174 (270)
Q Consensus 95 ~~i~i~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~S 174 (270)
++|+|+||.+ +|||||+|+++++||+|||||+++||+|+ +.|+++||+.++|++|+|+|++|++++||||+||||+.|
T Consensus 2 e~I~~ddF~k-vdirVG~I~~~e~hp~AdKL~~~~VD~G~-~~~~iv~g~~~~y~pe~LvGk~v~~v~Nlkp~kirGv~S 79 (118)
T 3ers_X 2 ETVAYADFAR-LEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETS 79 (118)
T ss_dssp CCCCHHHHHT-SCEEEEEEEEEECCTTCSSCEEEEEECSS-SEEEEEECCTTTSCHHHHTTCEEEEECCSCCEEETTEEE
T ss_pred ceEcHHHcee-eeEEEEEEEEEEEcCCCCCcEEEEEEcCC-cEeeEEEEeehhcCHhHhcCCEEEeecccccceECCeec
Confidence 3699999975 99999999999999999999999999998 568889999999999999999999999999999999999
Q ss_pred ceEEeeeccCCCCcEEEEcCCCCCCCCceEEeCCC
Q 024253 175 NGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQ 209 (270)
Q Consensus 175 eGMLL~ase~~~~~VelL~PP~~a~~G~rV~f~~~ 209 (270)
||||||+.++++..+.++.|++++++|+||+|+.+
T Consensus 80 ~GMll~a~~~d~~~~~ll~p~~~~~~G~rv~~e~~ 114 (118)
T 3ers_X 80 ECMLLCAETDDGSESVLLTPERMMPAGVRVVLDHH 114 (118)
T ss_dssp CCEECEEECTTSSCEEECCCSSCCCTTCBCCCC--
T ss_pred eEEEEEEEcCCCCcEEEEcCCCCCCCCCEEEEeee
Confidence 99999998876667888999999999999999754
No 4
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=100.00 E-value=9e-35 Score=234.82 Aligned_cols=107 Identities=27% Similarity=0.372 Sum_probs=100.1
Q ss_pred ceeecccCcccCeEEEEEEEEEeCCCCCce-EEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceec
Q 024253 96 SVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKS 174 (270)
Q Consensus 96 ~i~i~~f~~~LdIrVGkIvev~~HP~ADKL-yv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~S 174 (270)
+|+|+||. ++|||||+|+++++||+|||| |+++||+|+.++|||+||++|+|.+++|+|++|++++||||+||||+.|
T Consensus 1 ~i~~~df~-k~di~VG~I~~~e~hp~adkL~~~~~Vd~G~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S 79 (109)
T 1gd7_A 1 MTPLEAFQ-ILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLS 79 (109)
T ss_dssp CCHHHHHH-HSCEEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECSSCCEEETTEEE
T ss_pred CcChHHhh-ccCEEEEEEEEEEECCCCccccEEEEEEcCCCcEEEEEECCccccChhhcCCCEEEeeEecCceEeccEee
Confidence 47899997 599999999999999999999 9999999986789999999999999999999999999999999999999
Q ss_pred ceEEeeeccCCCCcEEEEcCCCCCCCCceE
Q 024253 175 NGMLLAASDAAHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 175 eGMLL~ase~~~~~VelL~PP~~a~~G~rV 204 (270)
||||||+++. ++++.+|.||+++++|+++
T Consensus 80 ~GMl~sa~~~-~~~i~~l~~~~~~~~G~~i 108 (109)
T 1gd7_A 80 EVLVLGVPDE-AGRVVLLAPDREVPLGGKV 108 (109)
T ss_dssp CSEECEEECT-TSCEEEEEESSCCCTTCBC
T ss_pred cCEEEEeecC-CCcEEEEeCCCCCCCCCCC
Confidence 9999999854 3579999999999999986
No 5
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=100.00 E-value=1.6e-34 Score=234.58 Aligned_cols=108 Identities=27% Similarity=0.375 Sum_probs=101.4
Q ss_pred CceeecccCcccCeEEEEEEEEEeCCCCCc-eEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeecccccccee
Q 024253 95 KSVNVKDAANMLDIRVGRIIKAWRHEEADS-LYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVK 173 (270)
Q Consensus 95 ~~i~i~~f~~~LdIrVGkIvev~~HP~ADK-Lyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~ 173 (270)
++|+|+||.+ +|||||+|+++++||++|| ||+++||+|+.++|||+||+.++|.+++|+|++|++++||||+||||+.
T Consensus 3 ~~i~~ddF~k-ldirVG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G~~~~~~~~~l~G~~v~~~~nlkp~kirGv~ 81 (112)
T 3g48_A 3 AMANFEDFLT-LDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNFPPKRVAGFK 81 (112)
T ss_dssp CCCCHHHHHT-CCEEEEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECCSCCEEETTEE
T ss_pred ceeCHHHhhc-eEEEEEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeCCccccChhHcCCCEEEEEccccceeECCee
Confidence 4699999974 9999999999999999999 9999999998678999999999999999999999999999999999999
Q ss_pred cceEEeeeccCCCCcEEEEcCCCCCCCCceE
Q 024253 174 SNGMLLAASDAAHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 174 SeGMLL~ase~~~~~VelL~PP~~a~~G~rV 204 (270)
|||||||+++.+ +.+.|++||.++++|+||
T Consensus 82 S~GMl~s~~~~~-~~~~ll~p~~~~~~G~~i 111 (112)
T 3g48_A 82 SEVLVLGGVPEA-GDVVLLQPNMELPNGTKI 111 (112)
T ss_dssp ECSEECEEEEET-TEEEECCCSSCCCTTCBC
T ss_pred cCcEEeEeecCC-CCEEEEeCCCCCCCCCCc
Confidence 999999998643 468999999999999987
No 6
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=100.00 E-value=1.5e-34 Score=234.83 Aligned_cols=109 Identities=28% Similarity=0.359 Sum_probs=100.8
Q ss_pred CceeecccCcccCeEEEEEEEEEeCCCCCce-EEEEEEcCCC-CcEEEEeCcccccCcccCCCCEEEEEEeeccccccce
Q 024253 95 KSVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEA-EPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGV 172 (270)
Q Consensus 95 ~~i~i~~f~~~LdIrVGkIvev~~HP~ADKL-yv~kVDvGe~-~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv 172 (270)
++|+|+||. ++|||||+|+++++||++||| |+++||+|++ ++|||+||++|+|.+++|.|++|++++||||+||||+
T Consensus 3 ~~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~~Vd~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv 81 (113)
T 2nzh_A 3 HMAVIDDFE-KLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVNFPPRRIAGF 81 (113)
T ss_dssp -CHHHHHHH-HCCEEEEEEEEEEEETTSSSCEEEEEEECHHHHCEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEETTE
T ss_pred cccCHHHhh-cCCEEEEEEEEEEECCCCCcccEEEEEEeCCCCcEEEEEECCCcccCHHHhCCCEEEeeEEEcceEECCE
Confidence 458999997 599999999999999999999 9999999985 6899999999999999999999999999999999999
Q ss_pred ecceEEeeeccCCCCcEEEEcCCCCCCCCceEE
Q 024253 173 KSNGMLLAASDAAHENVELLEPPQGSVPGERIW 205 (270)
Q Consensus 173 ~SeGMLL~ase~~~~~VelL~PP~~a~~G~rV~ 205 (270)
.|||||||+++. +++++++.||+++++|++++
T Consensus 82 ~S~GMl~sa~~~-~~~i~ll~~~~~~~~G~~i~ 113 (113)
T 2nzh_A 82 KSEVLVLGGIPG-QGDVVLLQPDQPVPNGTKIG 113 (113)
T ss_dssp EECSEECEEEEE-TTEEEEEEESSCCCTTCEEC
T ss_pred EeCCEEEEeecC-CCCEEEEECCCCCCCCCCCC
Confidence 999999999874 35788999999999999973
No 7
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=100.00 E-value=6.4e-34 Score=229.01 Aligned_cols=105 Identities=47% Similarity=0.712 Sum_probs=98.4
Q ss_pred ceeecccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecc
Q 024253 96 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSN 175 (270)
Q Consensus 96 ~i~i~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~Se 175 (270)
+|+|+||. ++|||||+|+++++||+|||||+++||+|+ ++|||+||++|+|.+++|.|++|++++||||+||||+.||
T Consensus 2 ~i~~~df~-k~dl~VG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv~S~ 79 (107)
T 1mkh_A 2 YVKFDDFA-KLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ 79 (107)
T ss_dssp CCCHHHHH-TSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEEC
T ss_pred EecHHHhh-ccCEEEEEEEEEEECCCCCccEEEEEEeCC-eEEEEEeCCccccChhhcCCCEEECCeeEcceEEcCeeec
Confidence 58899997 499999999999999999999999999998 6899999999999999999999999999999999999999
Q ss_pred eEEeeeccCCCCcEEEEcCCCCCCCCceE
Q 024253 176 GMLLAASDAAHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 176 GMLL~ase~~~~~VelL~PP~~a~~G~rV 204 (270)
|||||++ +++++.+|.||+++++|+++
T Consensus 80 GMl~s~~--~~~gi~~l~p~~~~~~G~~i 106 (107)
T 1mkh_A 80 GMLLAAD--DGERVALLMPDKEVKLGAKV 106 (107)
T ss_dssp CCBCEEE--CSSCEEECCCSSCCCTTCEE
T ss_pred cEEEEcc--CCCcEEEEeCCCCCCCCCCC
Confidence 9999995 35689999999999999987
No 8
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=4.4e-34 Score=233.05 Aligned_cols=107 Identities=23% Similarity=0.315 Sum_probs=100.3
Q ss_pred ceeecccCcccCeEEEEEEEEEeCCCCCce-EEEEEEcCCC-CcEEEEeCcccccCcccCCCCEEEEEEeecccccccee
Q 024253 96 SVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEA-EPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVK 173 (270)
Q Consensus 96 ~i~i~~f~~~LdIrVGkIvev~~HP~ADKL-yv~kVDvGe~-~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~ 173 (270)
+|+|++|. ++|||||+|+++++||+|||| |+++||+|++ ++|||+||++|+|.+++|.|++|++++||||+||||+.
T Consensus 7 ~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~~VD~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv~ 85 (116)
T 2q2i_A 7 EISYADFE-KVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFR 85 (116)
T ss_dssp CCCHHHHH-TSCEEEEEEEEEEECTTSSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTEE
T ss_pred eeCHHHhh-cCCEEEEEEEEEEECCCCCCccEEEEEEeCCCCcEEEEEECCcCccChhhcCCCEEECceEEcceEECCEE
Confidence 59999997 499999999999999999999 9999999985 68999999999999999999999999999999999999
Q ss_pred cceEEeeeccCCCCcEEEEcCCCCCCCCceE
Q 024253 174 SNGMLLAASDAAHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 174 SeGMLL~ase~~~~~VelL~PP~~a~~G~rV 204 (270)
|||||||+++. ++++.+|.||+++++|+++
T Consensus 86 S~GMl~sa~~~-~~~i~ll~p~~~~~~G~~i 115 (116)
T 2q2i_A 86 SEVLTLGFADA-NGDIVLAAVERPVPNGEKM 115 (116)
T ss_dssp ECCEECEEECT-TSCEEEEEESSCCCTTCBC
T ss_pred eCCEEEEeecC-CCcEEEEeCCCCCCCCCCC
Confidence 99999999854 4579999999999999986
No 9
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-33 Score=228.43 Aligned_cols=106 Identities=29% Similarity=0.484 Sum_probs=99.4
Q ss_pred ceeecccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecc
Q 024253 96 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSN 175 (270)
Q Consensus 96 ~i~i~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~Se 175 (270)
+|+|+||. ++|||||+|+++++||+|||||+++||+|+ ++|||+||++|+|.+++|+|++|++++||||+||||+.||
T Consensus 6 ~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~VD~G~-~~rqIV~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S~ 83 (112)
T 2cwp_A 6 LYDVDEFW-KFQMKVGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQ 83 (112)
T ss_dssp CCCHHHHH-TSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTSCGGGTTTCEEEEECSSCCEEETTEEEC
T ss_pred CcCHHHhh-cCCEEEEEEEEEEECCCCCccEEEEEEeCC-eEEEEEECCccccChhhcCCCEEECeEEEccceeCCEecc
Confidence 48999997 499999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred eEEeeeccCCCCcEEEEcCCCCCCCCceE
Q 024253 176 GMLLAASDAAHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 176 GMLL~ase~~~~~VelL~PP~~a~~G~rV 204 (270)
|||||+++++ +++.|+.||+++++|+++
T Consensus 84 GMl~sa~~~~-~~~~il~~~~~~~~G~~i 111 (112)
T 2cwp_A 84 GMLILAETED-GKVYLIPVPEEVPVGARV 111 (112)
T ss_dssp SEECCEECTT-SCEECCBCCTTSCTTCEE
T ss_pred cEEEEeecCC-CcEEEEECCCCCCCCCCC
Confidence 9999998543 467899999999999997
No 10
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=100.00 E-value=1.1e-33 Score=228.95 Aligned_cols=107 Identities=33% Similarity=0.610 Sum_probs=99.3
Q ss_pred CCceeecccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeecccccccee
Q 024253 94 DKSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVK 173 (270)
Q Consensus 94 ~~~i~i~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~ 173 (270)
+++|+|+||. ++|||||+|+++++||+|||||+++||+|+ ++|||+||+.|+|.+++|.|++|++++||||+||||+.
T Consensus 4 ~~~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv~ 81 (111)
T 1pyb_A 4 KALIGIEDFL-KVDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIE 81 (111)
T ss_dssp -CCCCHHHHH-HSCEEEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEETTSCSSCTTSCC
T ss_pred ccccCHHHhc-cCCEEEEEEEEEEECCCCCccEEEEEEeCC-cEEEEEECCccccCccccCCCEEECcEeecceEEccEe
Confidence 3459999997 599999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred cceEEeeeccCCCCcEEEEcCCCCCCCCceE
Q 024253 174 SNGMLLAASDAAHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 174 SeGMLL~ase~~~~~VelL~PP~~a~~G~rV 204 (270)
|||||||++++ +.+.|+.||+++++|+++
T Consensus 82 S~GMl~sa~e~--~~~~il~~~~~~~~G~~v 110 (111)
T 1pyb_A 82 SQGMILAASDG--ENLSVIVPDRDVKEGAKL 110 (111)
T ss_dssp BSSEECEEECS--SCEEEEEESSCCCTTEEC
T ss_pred eccEEEEeccC--CceEEEECCCCCCCCCCC
Confidence 99999999873 356788889999999986
No 11
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.8e-33 Score=234.13 Aligned_cols=107 Identities=23% Similarity=0.315 Sum_probs=100.3
Q ss_pred ceeecccCcccCeEEEEEEEEEeCCCCCce-EEEEEEcCCC-CcEEEEeCcccccCcccCCCCEEEEEEeecccccccee
Q 024253 96 SVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEA-EPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVK 173 (270)
Q Consensus 96 ~i~i~~f~~~LdIrVGkIvev~~HP~ADKL-yv~kVDvGe~-~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~ 173 (270)
+|+|+||. ++|||||+|+++++||++||| |+++||+|++ ++|||+||++|+|.+++|.|++|++++||||+||||+.
T Consensus 22 ~i~~~df~-k~~lrVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G~~n~~~p~al~G~~v~~~~nlkp~kirGv~ 100 (131)
T 2q2h_A 22 EISYADFE-KVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFR 100 (131)
T ss_dssp CCCHHHHH-TSCEEEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTEE
T ss_pred ccCHHHhh-ccCEEEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEECCCcccChhhcCCCEEECceEEcceEECCEE
Confidence 49999997 499999999999999999999 9999999985 68999999999999999999999999999999999999
Q ss_pred cceEEeeeccCCCCcEEEEcCCCCCCCCceE
Q 024253 174 SNGMLLAASDAAHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 174 SeGMLL~ase~~~~~VelL~PP~~a~~G~rV 204 (270)
|||||||++++ ++++.+|.||+++++|+++
T Consensus 101 SeGMl~sa~~~-~~gi~lL~p~~~~~~G~~i 130 (131)
T 2q2h_A 101 SEVLTLGFADA-NGDIVLAAVERPVPNGEKM 130 (131)
T ss_dssp ECCEECEEECT-TSCEEEEEESSCCCTTCBC
T ss_pred eCcEEEEeecC-CCcEEEEeCCCCCCCCCCC
Confidence 99999999854 3579999999999999986
No 12
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X
Probab=99.97 E-value=1.8e-32 Score=221.94 Aligned_cols=108 Identities=39% Similarity=0.557 Sum_probs=97.7
Q ss_pred ceeecccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecc
Q 024253 96 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSN 175 (270)
Q Consensus 96 ~i~i~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~Se 175 (270)
+|+|+||. ++|||||+|+++++||++||||+++||+|+ +.|||+||+..+|++++|.|++|++++||||+||||+.||
T Consensus 3 ~i~~~df~-k~dlrVG~I~~~e~hp~adkL~v~~Vd~G~-~~~qiv~g~a~~~~~~~l~G~~v~~~~nikp~klrGv~S~ 80 (111)
T 1pxf_A 3 TVAYADFA-RLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSE 80 (111)
T ss_dssp CSSHHHHH-HSCEEEEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTSHHHHHTTCEEEEETTCSCCCBTTBCCC
T ss_pred ccCHHHhh-cccEEEEEEEEEEECCCCCeEEEEEEEeCC-CceEEEEeccCcccchhcCCCEEEEEEEEecccCCCEecc
Confidence 59999997 599999999999999999999999999997 6899999988888999999999999999999999999999
Q ss_pred eEEeeeccCCCCcEEEEcCCCCCCCCceEE
Q 024253 176 GMLLAASDAAHENVELLEPPQGSVPGERIW 205 (270)
Q Consensus 176 GMLL~ase~~~~~VelL~PP~~a~~G~rV~ 205 (270)
|||||+.++++..+.++.|+.+.++|++|.
T Consensus 81 GMlL~a~~ed~~~~~l~~p~~~~~~G~~vv 110 (111)
T 1pxf_A 81 CMLLCAETDDGSESVLLTPERMMPAGVRVV 110 (111)
T ss_dssp CCBCEEECTTSCCEEECCCSSCCCTTCBCC
T ss_pred eEEEEecccCCCcEEEEcCCCCCCCCCEec
Confidence 999777655544577888888899999874
No 13
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.92 E-value=8.1e-27 Score=236.20 Aligned_cols=105 Identities=48% Similarity=0.741 Sum_probs=0.0
Q ss_pred ceeecccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecc
Q 024253 96 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSN 175 (270)
Q Consensus 96 ~i~i~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~Se 175 (270)
+|+|+||.+ +|||||+|+++++||++||||+++||+|+ ++||||||++|+|.+++|+|++|++++||||+||||++||
T Consensus 617 ~i~~~~f~k-~~~~vg~i~~~~~~p~adkl~~~~vd~G~-~~~~iv~g~~~~~~~~~l~G~~v~~~~nl~~~k~~g~~S~ 694 (722)
T 1rqg_A 617 YVKFDDFAK-LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ 694 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHhHhhh-cceEEEEEEEEEeCCCCCcceEEEEEcCC-ceEEEEECCcccCCHHHcCCCEEeCeeEEcceeeCCcccC
Confidence 699999975 99999999999999999999999999998 5899999999999999999999999999999999999999
Q ss_pred eEEeeeccCCCCcEEEEcCCCCCCCCceE
Q 024253 176 GMLLAASDAAHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 176 GMLL~ase~~~~~VelL~PP~~a~~G~rV 204 (270)
|||||+++. ++|.+|.|++++++|++|
T Consensus 695 gM~~~~~~~--~~i~~l~~~~~~~~G~~~ 721 (722)
T 1rqg_A 695 GMLLAADDG--ERVALLMPDKEVKLGAKV 721 (722)
T ss_dssp -----------------------------
T ss_pred eEEEEeeCC--CcEEEeCCCCCCCCCCCC
Confidence 999999643 579999888899999987
No 14
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=99.92 E-value=4.6e-25 Score=194.84 Aligned_cols=91 Identities=27% Similarity=0.370 Sum_probs=82.1
Q ss_pred cCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEE---------Eeeccccccceecce
Q 024253 106 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVL---------ANLKPRNMRGVKSNG 176 (270)
Q Consensus 106 LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv---------~NLKprKmrGv~SeG 176 (270)
-++|||+|+++++||+|||||+|+||+|+ ++|||+||++|++ .|++|+++ +||||+||||+.|+|
T Consensus 91 ~~vvVG~V~~~e~hP~ADkL~v~~VdvG~-~~~qIV~Ga~n~~-----~G~kVvva~~Ga~lp~g~nIk~~KlrGv~S~G 164 (199)
T 3bu2_A 91 PKFVVGYVETKDKHPDADKLSVLSVDVAT-EKLQIVCGAPNVE-----AGQKVVVAKVGAVMPSGMVIKDAELRGVASSG 164 (199)
T ss_dssp CSEEEEEEEEEEECTTTSSCEEEEEECSS-CEEEEEECCTTCC-----TTCEEEEECTTCBCTTSCBCCEEEETTEEEES
T ss_pred CCeEEEEEEEEEECCCCCEEEEEEEEeCC-EEEEEEeCCchhh-----CCCEEEEEecCCCccCCceEeeeEEcCceecc
Confidence 37999999999999999999999999995 7899999999998 99999999 899999999999999
Q ss_pred EEeeeccC------CCCcEEEEcCCCCCCCCceE
Q 024253 177 MLLAASDA------AHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 177 MLL~ase~------~~~~VelL~PP~~a~~G~rV 204 (270)
|||++++. ++.++.+| |+++++|+++
T Consensus 165 MlcSa~ELGl~~~~~~~gI~~l--~~~~~~G~~v 196 (199)
T 3bu2_A 165 MICSMKELGLPNAPQEKGIMVL--SDDYTVGQSF 196 (199)
T ss_dssp EECCTTTTTCSSCBSCCSCCEE--CTTSCTTSBS
T ss_pred EEeehhhcCCCcccCCCeEEEC--CCCCCCCCcc
Confidence 99999862 24565555 8899999997
No 15
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.7e-25 Score=202.39 Aligned_cols=110 Identities=26% Similarity=0.379 Sum_probs=86.2
Q ss_pred cccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecceEEe
Q 024253 100 KDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLL 179 (270)
Q Consensus 100 ~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~SeGMLL 179 (270)
++|. ++|||||+|+++++||+|||||+|+||+|+ ++||||||+.||. .| .+++++||+|++|||+.|+||||
T Consensus 131 ~~f~-kldirVGkIl~ve~hP~AdKL~v~~VD~G~-~~rqIV~Ga~n~~-----~G-~vVvVAnLpp~klrGv~SeGMlc 202 (241)
T 2e8g_A 131 DPVI-AVDIVVGEVMSVGKHPSADRLLVTNVNIGE-RAVTVVTNDLTVK-----EG-NRVAVALLPPRNFFGIVSEGMFL 202 (241)
T ss_dssp CGGG-GSCEEEEEEEEEEECTTCTTCEEEEEECSS-CEEEEEESCTTCC-----TT-CEEEEECCCCEEETTEEECCEEC
T ss_pred Cccc-ccCEEEEEEEEEEECCCCCccEEEEEEeCC-ceEEEEECCcccc-----CC-CEEEEEECCCcccCCcccCcEEe
Confidence 4565 589999999999999999999999999998 6899999999987 47 56678999999999999999999
Q ss_pred eeccCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCC
Q 024253 180 AASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQP 235 (270)
Q Consensus 180 ~ase~~~~~VelL~PP~~a~~G~rV~f~~~~~~~~~p~~~~p~~~~KkK~we~v~p 235 (270)
|+++ + +...+ .|..+.|. ...|+ ..+|||||+||+++.
T Consensus 203 sa~E----g--l~~~~----~G~I~~Lp-----~~~p~---~~lnpkkk~~e~~~~ 240 (241)
T 2e8g_A 203 GAGE----G--VLKNV----KGEIGGLP-----KGIPL---EALNETRNAVEAFLK 240 (241)
T ss_dssp EETT----E--ECCBC----BSCTTSCC-----BSCCG---GGGHHHHHHHHHHHC
T ss_pred ECcc----C--CCCCC----CCcEEECC-----CCCch---hhcCchhhHHHHHhc
Confidence 9975 2 33222 24222221 11222 357899999999875
No 16
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.84 E-value=3.2e-21 Score=197.89 Aligned_cols=99 Identities=30% Similarity=0.411 Sum_probs=87.3
Q ss_pred ecccCccc-CeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEE---------Eeecccc
Q 024253 99 VKDAANML-DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVL---------ANLKPRN 168 (270)
Q Consensus 99 i~~f~~~L-dIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv---------~NLKprK 168 (270)
++++...+ .++||+|+++++||++|||++|+||+|+++++|||||++|+. +|++|+|+ +|||++|
T Consensus 35 v~~~~~~~~~~~vg~v~~~~~hp~adkL~~~~vd~G~~~~~~iv~ga~n~~-----~g~~v~va~~Ga~l~~~~~ik~~k 109 (795)
T 3pco_B 35 VEPVAGSFHGVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCR-----QGLRVAVATIGAVLPGDFKIKAAK 109 (795)
T ss_dssp EEESSCCCCCEEEEEEEEEECCTTCSSCCEEEEECSSSSCEEEECCCSSCC-----TTCEEEEECTTCBCTTSCBCCCEE
T ss_pred EEecCcCCCCeEEEEEEEEEecCCCCeEEEEEEEcCCCcEEEEEeCCcccc-----CCCEEEEEecCcCcCCCceEcccc
Confidence 44443334 499999999999999999999999999988999999999998 99999998 7999999
Q ss_pred ccceecceEEeeeccC----CCCcEEEEcCCCCCCCCceE
Q 024253 169 MRGVKSNGMLLAASDA----AHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 169 mrGv~SeGMLL~ase~----~~~~VelL~PP~~a~~G~rV 204 (270)
|||+.|+||||+++|. +++++.+| |+++++|+++
T Consensus 110 ~rG~~S~GMlcs~~elgl~~~~~gi~~l--~~~~~~G~~~ 147 (795)
T 3pco_B 110 LRGEPSEGMLCSFSELGISDDHSGIIEL--PADAPIGTDI 147 (795)
T ss_dssp SSSSEESSEECCSGGGTSCCCCSSCCEE--CSSCCTTSBH
T ss_pred cCCeecCcEecchhhcCCCCCCCeEEEC--CccccCCCCH
Confidence 9999999999999973 46676666 8899999998
No 17
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=99.77 E-value=1.2e-19 Score=186.13 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=80.5
Q ss_pred CeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCccccc----CcccCCCCEEEE-EEeeccccccceecceEEeee
Q 024253 107 DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYV----PLDFLQDRSVVV-LANLKPRNMRGVKSNGMLLAA 181 (270)
Q Consensus 107 dIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~----~~eeL~GkkVvV-v~NLKprKmrGv~SeGMLL~a 181 (270)
+++||+|+++++||++ ||++|+||+| ++||||||+.|++ -+..|.|.+++. .+|||++||||+.|+||||++
T Consensus 44 ~~~vg~V~~~~~hp~a-kL~v~~Vd~G--~~~qIv~Ga~n~~~g~~v~~a~~G~~l~~~~~~ik~~klrGv~S~GMlcs~ 120 (785)
T 1b7y_B 44 GVVFARVLEAHPIPGT-RLKRLVLDAG--RTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGVRSFGMALSP 120 (785)
T ss_dssp TEEEEEEEEEEECTTS-SCEEEEEESS--SEEEEEECCTTCCTTCEEEEECTTCCCSSCSSCCCCEECSSSEECSEECCH
T ss_pred CeEEEEEEEEEECCCC-eEEEEEEecC--CEEEEEeCCCccCCCCEeEEEcCCCEeecCceEEeeeEeccccccceeeeH
Confidence 5999999999999999 9999999999 6899999999996 444555555544 579999999999999999999
Q ss_pred cc----CCCCcEEEEcCCCCC-CCCceE--EeC
Q 024253 182 SD----AAHENVELLEPPQGS-VPGERI--WFG 207 (270)
Q Consensus 182 se----~~~~~VelL~PP~~a-~~G~rV--~f~ 207 (270)
++ .++.++ +.+|+++ ++|+++ +++
T Consensus 121 ~eLgl~~~~~gi--~~l~~~~~~~G~~~~~~l~ 151 (785)
T 1b7y_B 121 RELGVGEYGGGL--LEFPEDALPPGTPLSEAWP 151 (785)
T ss_dssp HHHTSCSCCSSC--CCBCTTSSCTTCBGGGTSC
T ss_pred HHhCCCCCCCce--EECccccccCCCcHHHccC
Confidence 86 344564 4558888 999999 555
No 18
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=99.74 E-value=1.5e-18 Score=178.10 Aligned_cols=95 Identities=25% Similarity=0.374 Sum_probs=81.9
Q ss_pred ecccCccc-CeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEE---------Eeecccc
Q 024253 99 VKDAANML-DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVL---------ANLKPRN 168 (270)
Q Consensus 99 i~~f~~~L-dIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv---------~NLKprK 168 (270)
++++...+ +++||+|+++++| ||++|+||+|+++++|||||++|+. +|++|+|+ +|||++|
T Consensus 35 v~~~~~~~~~~vvg~v~~~~~h----kL~~~~vd~g~~~~~~Iv~ga~n~~-----~g~~v~va~~Ga~lpg~~~ik~~k 105 (795)
T 2rhq_B 35 MIDYSKDIKNLVVGYIQSKEKG----SGNICQVDIGEEEPVQIVCGAPNVD-----AGQHVIVAKVGGRLPGGIKIKRAK 105 (795)
T ss_dssp EEETTTTCEEEEEEEEEEEECS----SSCEEEEECSSSSCEEEECCCTTCC-----TTCEEEEEEEEEEETTTEECCCEE
T ss_pred EEecccCCCCeEEEEEEEEEEE----eEEEEEEEcCCCeEEEEEeCCchhh-----CCCEEEEEecCcCcCCCceEccee
Confidence 44444333 5999999999999 9999999999877899999999997 99999999 8999999
Q ss_pred ccceecceEEeeecc----CC------CCcEEEEcCCCCCCCCceE
Q 024253 169 MRGVKSNGMLLAASD----AA------HENVELLEPPQGSVPGERI 204 (270)
Q Consensus 169 mrGv~SeGMLL~ase----~~------~~~VelL~PP~~a~~G~rV 204 (270)
|||+.|+||||+++| .+ +.++. ..|+++++|+++
T Consensus 106 lrG~~S~GMlcs~~elGl~~~~~~~~~~~gi~--~l~~~~~~G~~~ 149 (795)
T 2rhq_B 106 LRGERSEGMICSLQEIGISSNVVPKAYENGIF--VFPTEVEPGTDA 149 (795)
T ss_dssp ETTEEECSEECCSGGGTCCGGGSCHHHHTSCC--BCSSCCCTTSBH
T ss_pred ecCccccceeeeHHHcCCCcccccccCCCeEE--ECCCCCcCCCch
Confidence 999999999999986 23 35654 448899999998
No 19
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=48.68 E-value=34 Score=29.17 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=45.8
Q ss_pred ecccCcccC--eEEEEEEEEEeCCCCCceEEEEEEcCCCC--cEEEEeCc----ccccCcccCCCCEEEEEEeecccccc
Q 024253 99 VKDAANMLD--IRVGRIIKAWRHEEADSLYVEEVDVGEAE--PRIICSGL----VKYVPLDFLQDRSVVVLANLKPRNMR 170 (270)
Q Consensus 99 i~~f~~~Ld--IrVGkIvev~~HP~ADKLyv~kVDvGe~~--~RtIvSGl----~n~~~~eeL~GkkVvVv~NLKprKmr 170 (270)
+.++..+|. ||+|.|.++.+-+ ..++|++|+.. ...+++-. .-+.+|+ +|..|+|++ ..
T Consensus 7 ~~~l~R~l~nlir~G~V~~vd~~~-----~rvrV~~~~~~t~wl~~~~~~ag~~~~~~~P~--vGeqV~v~f------~~ 73 (211)
T 3qr8_A 7 IQELARALRNMIRTGIIVETDLNA-----GRCRVQTGGMCTDWLQWLTHRAGRSRTWWAPS--VGEQVLILA------VG 73 (211)
T ss_dssp CTTHHHHHHHHEEEEEEEEEETTT-----TEEEEEETTEECCCEEECCSCBSSSBCCCCCC--TTCEEEEEE------CC
T ss_pred HHHHHHHHHhCcEEEEEEEEECCC-----CEEEEEeCCccceeEEeEcccccCCceEeCCC--CCCEEEEEe------CC
Confidence 344444554 9999999997332 46777777532 23343321 2355777 899999975 36
Q ss_pred ceecceEEeee
Q 024253 171 GVKSNGMLLAA 181 (270)
Q Consensus 171 Gv~SeGMLL~a 181 (270)
|-.++|.++..
T Consensus 74 Gd~~~gvVlg~ 84 (211)
T 3qr8_A 74 GELDTAFVLPG 84 (211)
T ss_dssp TTTCCEEEEEE
T ss_pred CccCccEEEee
Confidence 77788988876
No 20
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=29.33 E-value=96 Score=23.69 Aligned_cols=45 Identities=22% Similarity=-0.014 Sum_probs=30.8
Q ss_pred EEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcc--cccCcccCCCCEEEEE
Q 024253 109 RVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLV--KYVPLDFLQDRSVVVL 161 (270)
Q Consensus 109 rVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~--n~~~~eeL~GkkVvVv 161 (270)
+-|||+++.. + . -.||++. ..|.|...+. .-.+++-..|++|+|-
T Consensus 5 IP~kVvei~~--~--~---A~Vd~~G-v~r~V~l~Lv~~~~~~~~~~vGD~VLVH 51 (90)
T 2ot2_A 5 VPGQIRTIDG--N--Q---AKVDVCG-IQRDVDLTLVGSCDENGQPRVGQWVLVH 51 (90)
T ss_dssp EEEEEEEECS--S--E---EEEECSS-SEEEEECTTTCSBCTTSCBCTTCEEEEE
T ss_pred cceEEEEEcC--C--c---EEEEcCC-eEEEEEEeeeeccCCCCCCCCCCEEEEe
Confidence 4588998843 2 1 7889985 6788887776 2223445589999984
No 21
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=24.43 E-value=1.2e+02 Score=22.36 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=27.3
Q ss_pred EEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEE
Q 024253 110 VGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVL 161 (270)
Q Consensus 110 VGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv 161 (270)
-|||+++.. ..-.||++. ..|.|...+.. +...|++|+|-
T Consensus 6 P~kVvei~~-------~~A~vd~~G-v~r~V~l~Lv~----~~~vGD~VLVH 45 (75)
T 2z1c_A 6 PGKVIEVNG-------PVAVVDFGG-VKREVRLDLMP----DTKPGDWVIVH 45 (75)
T ss_dssp CEEEEEEET-------TEEEEEETT-EEEEEECTTST----TCCTTCEEEEE
T ss_pred cEEEEEECC-------CEEEEEcCC-EEEEEEEEEeC----CCCCCCEEEEe
Confidence 378888821 246788875 56788776653 23489999984
No 22
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=23.25 E-value=1.8e+02 Score=22.80 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=29.9
Q ss_pred EEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEE
Q 024253 109 RVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLA 162 (270)
Q Consensus 109 rVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~ 162 (270)
.-|||+++.. .+ ..-.||++. ..|.|.-.+.. .+...|++|+|-.
T Consensus 26 IP~kVveI~~---~~--~~A~Vd~~G-v~reV~l~Lv~---e~~~vGDyVLVHv 70 (103)
T 3d3r_A 26 IPSQVVAVDN---ER--QSVTVDTLG-VRRDVSSHLMT---EPLAIGDYVLIHI 70 (103)
T ss_dssp CCEEEEEEET---TT--TEEEEEETT-EEEEEECTTBS---SCCCTTCEEEEEE
T ss_pred cCEEEEEEeC---CC--CEEEEEcCC-EEEEEEEEeec---CCCCCCCEEEEee
Confidence 4588999862 22 346789885 67888776652 1334899999853
No 23
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=21.80 E-value=1.5e+02 Score=24.59 Aligned_cols=32 Identities=22% Similarity=-0.106 Sum_probs=24.6
Q ss_pred EEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeC
Q 024253 109 RVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSG 143 (270)
Q Consensus 109 rVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSG 143 (270)
.||.|+.++..+ +-++.+||.|.+....++.-
T Consensus 52 IvGiVv~~~~~~---~~~~ytIDD~TG~~I~cv~w 83 (159)
T 3kf6_A 52 IVGYIAAIDIYE---GKHVLTVDDCSGMVLRVVFI 83 (159)
T ss_dssp EEEEEEEEEEET---TEEEEEEECSSSCEEEEEEE
T ss_pred EEEEEEEEEEeC---CEEEEEEecCCCCeEEEEEE
Confidence 679999999764 56999999998655555543
Done!