Query 024253
Match_columns 270
No_of_seqs 235 out of 1329
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 05:03:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024253.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024253hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ntga_ b.40.4.4 (A:) C-termin 100.0 8E-46 5.8E-50 317.4 17.3 163 103-270 6-169 (171)
2 d1fl0a_ b.40.4.4 (A:) EMAP II 100.0 4.8E-45 3.5E-49 310.5 13.9 161 101-270 2-163 (164)
3 d1pyba_ b.40.4.4 (A:) Structur 100.0 1.1E-34 8.4E-39 231.5 7.8 106 95-204 1-106 (107)
4 d1mkha_ b.40.4.4 (A:) C-termin 100.0 1.8E-34 1.3E-38 230.2 8.6 105 96-204 2-106 (107)
5 d1pxfa_ b.40.4.4 (A:) Structur 100.0 1.4E-34 9.8E-39 232.4 6.4 109 95-205 2-110 (111)
6 d1gd7a_ b.40.4.4 (A:) TRBP111 100.0 4.2E-32 3.1E-36 215.9 7.7 107 97-205 2-109 (109)
7 d1jjcb3 b.40.4.4 (B:39-151) Do 99.8 1.2E-21 8.9E-26 157.5 8.7 88 107-204 6-108 (113)
8 d1v6ga2 g.39.1.3 (A:42-81) Act 25.6 11 0.0008 23.6 1.0 12 198-209 10-21 (40)
9 d2rcfa1 b.40.15.1 (A:1-82) Car 25.2 65 0.0047 22.5 5.4 48 108-162 5-54 (82)
10 d2ot2a1 b.40.14.1 (A:1-90) Hyd 21.7 95 0.0069 21.8 5.8 44 110-161 6-51 (90)
11 d2z1ca1 b.40.14.1 (A:2-72) Hyd 20.4 99 0.0072 20.8 5.4 39 111-161 6-44 (71)
No 1
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=8e-46 Score=317.40 Aligned_cols=163 Identities=49% Similarity=0.760 Sum_probs=150.4
Q ss_pred CcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecceEEeeec
Q 024253 103 ANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLAAS 182 (270)
Q Consensus 103 ~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~SeGMLL~as 182 (270)
++++|||||+|+++++||++||||+++||+|+++.|||+||+.|++++++|.|+++++++||||+||||+.|||||||++
T Consensus 6 pskldi~VG~I~~v~~hP~adkL~v~~Vd~G~~~~~~Iv~g~~~~~~~~~~~g~~v~~~~nlk~~kirGv~SeGMl~s~~ 85 (171)
T d1ntga_ 6 PSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCAS 85 (171)
T ss_dssp GGGSCEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEECCBCCEEETTEEECCEECEEE
T ss_pred CccccEEEEEEEEEEECCCCCeeEEEEEEeCCCceEEEEeecccccccchhcccccceeeeccccccCccccceEEeecc
Confidence 45799999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred cCC-CCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeeeeecCcceEe
Q 024253 183 DAA-HENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMS 261 (270)
Q Consensus 183 e~~-~~~VelL~PP~~a~~G~rV~f~~~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~~ts~G~~~~ 261 (270)
+++ ++.+++++||+++++|++|+|+++++.. ++ +.+++|+|.|+.++++|.|++||.|+|++.+|+|++|+|++
T Consensus 86 e~g~~~~~~~~~~p~~~~~G~~v~~~~~~~~~--~~---~~~~~k~k~~~~~~~~l~v~~d~~a~~k~~~~~t~~g~~~~ 160 (171)
T d1ntga_ 86 IEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQ--PD---EELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISC 160 (171)
T ss_dssp EESSSEEEEECBCCBTCCTTCEEEETTCSSCC--CC---SSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEETTEECBC
T ss_pred cCCCccceeeecCCCCCCCcCEEEECCccccC--cc---cccCcccchHHHhcccccCCCCCEEEECCeeeecCCCCEEe
Confidence 753 4568899999999999999999886532 22 24568999999999999999999999999999999999999
Q ss_pred ccCCCcccC
Q 024253 262 RSLKNANIS 270 (270)
Q Consensus 262 ~sl~n~~Is 270 (270)
++++|++||
T Consensus 161 ~~i~~~~iS 169 (171)
T d1ntga_ 161 KSLKGGNIS 169 (171)
T ss_dssp SSCTTCEEE
T ss_pred ccCCCCEEe
Confidence 999999997
No 2
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.8e-45 Score=310.54 Aligned_cols=161 Identities=47% Similarity=0.772 Sum_probs=147.7
Q ss_pred ccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecceEEee
Q 024253 101 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSNGMLLA 180 (270)
Q Consensus 101 ~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~SeGMLL~ 180 (270)
||. +||||||+|+++++||++||||+++||+|++++|||+||+.|++++++|.|++|++++||||+||||+.|||||||
T Consensus 2 Df~-kldirVGkI~~~~~hP~adkL~v~~VD~G~~~~~~Iv~g~~~~~~~~~l~g~~v~~~~nlkp~kirGv~SeGMlls 80 (164)
T d1fl0a_ 2 DVS-RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMC 80 (164)
T ss_dssp CGG-GSCEEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECE
T ss_pred Ccc-ceeEEEEEEEEEEECCCCCcceEEEEEccCCceEEEEeeccccccchhccCccccccccccccccCceEcceEEEe
Confidence 565 5999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeee-eecCcce
Q 024253 181 ASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLM-QTSAGAV 259 (270)
Q Consensus 181 ase~~~~~VelL~PP~~a~~G~rV~f~~~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~-~ts~G~~ 259 (270)
+++. +++.+++||+++++|++|+|++++.. ++ +..++|+|+||.++++|++|++|+++|+|.++ ++++|+|
T Consensus 81 a~~~--~~~~ll~~p~~~~~G~~v~~~~~~~~---~~---~~l~~k~~~~~~i~~~l~~n~~~~~~~~g~~~~~~~~g~~ 152 (164)
T d1fl0a_ 81 ASSP--EKIEILAPPNGSVPGDRITFDAFPGE---PD---KELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVC 152 (164)
T ss_dssp EEET--TEEEECBCCTTCCTTCBCCCTTSCCC---CC---SSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETTTEEC
T ss_pred eeCC--CccEEEeCCCCCCCCCEEEecccCCC---Cc---hhcCcccchhHhhccCcEECCCCEEEECCEEeeeccCCCE
Confidence 9975 46889999999999999999987642 32 23568999999999999999999999999998 5689999
Q ss_pred EeccCCCcccC
Q 024253 260 MSRSLKNANIS 270 (270)
Q Consensus 260 ~~~sl~n~~Is 270 (270)
++++|+|+.|+
T Consensus 153 ~~~~l~~~~Ik 163 (164)
T d1fl0a_ 153 RAQTMSNSGIK 163 (164)
T ss_dssp BCSSCCSCEEC
T ss_pred EcccCCCCeee
Confidence 99999999985
No 3
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00 E-value=1.1e-34 Score=231.46 Aligned_cols=106 Identities=33% Similarity=0.621 Sum_probs=99.2
Q ss_pred CceeecccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceec
Q 024253 95 KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKS 174 (270)
Q Consensus 95 ~~i~i~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~S 174 (270)
+.|+|+||.+ +|||||+|+++++||++||||+++||+|+ +.|||+||+.++|++|+|+|++|++++||||+||||+.|
T Consensus 1 a~I~~~dF~k-ldirVG~I~~~e~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~~~e~liGk~v~~v~Nlkp~kirG~~S 78 (107)
T d1pyba_ 1 ALIGIEDFLK-VDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIES 78 (107)
T ss_dssp CCCCHHHHHH-SCEEEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEETTSCSSCTTSCCB
T ss_pred CEEeHHHcce-eeEEEEEEEEEEeccccCceEEEEeecCC-cccceEEeeecccChhHhcCcEEEEEeccccceECCeee
Confidence 3689999974 99999999999999999999999999998 579999999999999999999999999999999999999
Q ss_pred ceEEeeeccCCCCcEEEEcCCCCCCCCceE
Q 024253 175 NGMLLAASDAAHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 175 eGMLL~ase~~~~~VelL~PP~~a~~G~rV 204 (270)
|||+||+++. +++.+|.|++++++|++|
T Consensus 79 egMil~~~d~--~~~~ll~p~~~~~~G~~i 106 (107)
T d1pyba_ 79 QGMILAASDG--ENLSVIVPDRDVKEGAKL 106 (107)
T ss_dssp SSEECEEECS--SCEEEEEESSCCCTTEEC
T ss_pred eEEEEEEEcC--CceEEEeCCCCCCCCCcc
Confidence 9999999864 468899999999999987
No 4
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=100.00 E-value=1.8e-34 Score=230.19 Aligned_cols=105 Identities=48% Similarity=0.741 Sum_probs=98.4
Q ss_pred ceeecccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecc
Q 024253 96 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSN 175 (270)
Q Consensus 96 ~i~i~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~Se 175 (270)
+|+|+||.+ +|||||+|+++++||+|||||+++||+|+ +.|||+||+.|+|++|+|.|++|++++||||+||||+.||
T Consensus 2 ~I~~ddF~k-ldirVG~I~~~~~hp~adkL~~~~Vd~G~-~~~~Iv~G~~~~~~~e~liG~~v~~v~nlk~~kirGv~Se 79 (107)
T d1mkha_ 2 YVKFDDFAK-LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ 79 (107)
T ss_dssp CCCHHHHHT-SCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEEC
T ss_pred EEEhhHeee-eeEEEEEEEEEEecCCCCceEEEEEEcCC-eEEEEEEEeeeEEcCcccCCCEEEeecCCCcccCCCccCC
Confidence 489999975 99999999999999999999999999998 6899999999999999999999999999999999999999
Q ss_pred eEEeeeccCCCCcEEEEcCCCCCCCCceE
Q 024253 176 GMLLAASDAAHENVELLEPPQGSVPGERI 204 (270)
Q Consensus 176 GMLL~ase~~~~~VelL~PP~~a~~G~rV 204 (270)
|||||+++. +++.+|.||+++++|++|
T Consensus 80 GMl~s~~e~--~~~~ll~~~~~~~~G~~i 106 (107)
T d1mkha_ 80 GMLLAADDG--ERVALLMPDKEVKLGAKV 106 (107)
T ss_dssp CCBCEEECS--SCEEECCCSSCCCTTCEE
T ss_pred EEEEEeecC--CcEEEEECCCCCCCCCcc
Confidence 999999864 568899999999999997
No 5
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.4e-34 Score=232.38 Aligned_cols=109 Identities=39% Similarity=0.556 Sum_probs=100.5
Q ss_pred CceeecccCcccCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceec
Q 024253 95 KSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKS 174 (270)
Q Consensus 95 ~~i~i~~f~~~LdIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~S 174 (270)
++|+|++|. ++|||||+|+++++||+|||||+++||+|+ +.|||+||+.++|++|+|+|++|++++||||+||||+.|
T Consensus 2 e~i~~~dF~-kldirVG~I~~~e~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~~~e~lvGk~v~~v~Nlkp~kirGv~S 79 (111)
T d1pxfa_ 2 ETVAYADFA-RLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETS 79 (111)
T ss_dssp CCSSHHHHH-HSCEEEEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTSHHHHHTTCEEEEETTCSCCCBTTBCC
T ss_pred CeechhHhc-eeeEEEEEEEEEEEcCCCCceEEEEEEeCC-cceeEEEEcccccChhHhcCceeeeecccccceECCeec
Confidence 469999997 499999999999999999999999999998 679999999999999999999999999999999999999
Q ss_pred ceEEeeeccCCCCcEEEEcCCCCCCCCceEE
Q 024253 175 NGMLLAASDAAHENVELLEPPQGSVPGERIW 205 (270)
Q Consensus 175 eGMLL~ase~~~~~VelL~PP~~a~~G~rV~ 205 (270)
||||||+.++++..+.++.|++++++|+||.
T Consensus 80 eGMil~~~~~d~~~~~ll~p~~~~~~G~rv~ 110 (111)
T d1pxfa_ 80 ECMLLCAETDDGSESVLLTPERMMPAGVRVV 110 (111)
T ss_dssp CCCBCEEECTTSCCEEECCCSSCCCTTCBCC
T ss_pred eEEEEEeEcCCCCcEEEEcCCCCCCCCCEec
Confidence 9999999876656677888888899999973
No 6
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]}
Probab=99.97 E-value=4.2e-32 Score=215.91 Aligned_cols=107 Identities=27% Similarity=0.388 Sum_probs=96.9
Q ss_pred eeecccCcccCeEEEEEEEEEeCCCCCce-EEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEEeeccccccceecc
Q 024253 97 VNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLANLKPRNMRGVKSN 175 (270)
Q Consensus 97 i~i~~f~~~LdIrVGkIvev~~HP~ADKL-yv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~NLKprKmrGv~Se 175 (270)
++|++|. ++|||||+|+++++||++||| |++.+|.|+.+.++|++|+.+++++|+|+|+++++++||||+||||+.||
T Consensus 2 ~~~edF~-kldirVG~I~s~e~hp~adkll~~~v~~~g~~~~~~i~~~~~~~~~~e~lvG~~v~~~~Nlkp~kirGv~Se 80 (109)
T d1gd7a_ 2 TPLEAFQ-ILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSE 80 (109)
T ss_dssp CHHHHHH-HSCEEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECSSCCEEETTEEEC
T ss_pred CChhHhc-eeeEEEEEEEEEEEccCcccccEEEEEecCcccceEEeeccccccChhhhcCCccccccccCcceEccccCC
Confidence 6899996 599999999999999999995 55555666767899999999999999999999999999999999999999
Q ss_pred eEEeeeccCCCCcEEEEcCCCCCCCCceEE
Q 024253 176 GMLLAASDAAHENVELLEPPQGSVPGERIW 205 (270)
Q Consensus 176 GMLL~ase~~~~~VelL~PP~~a~~G~rV~ 205 (270)
|||||+++. ++++.+|+||+++++|+|||
T Consensus 81 GMiL~~~~~-~~~~~ll~p~~~~~~G~ri~ 109 (109)
T d1gd7a_ 81 VLVLGVPDE-AGRVVLLAPDREVPLGGKVF 109 (109)
T ss_dssp SEECEEECT-TSCEEEEEESSCCCTTCBCC
T ss_pred EEEEEEEcC-CCcEEEEeCCCCCCCCCccC
Confidence 999999875 45789999999999999986
No 7
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=99.84 E-value=1.2e-21 Score=157.51 Aligned_cols=88 Identities=20% Similarity=0.287 Sum_probs=76.7
Q ss_pred CeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEE----------eeccccccceecce
Q 024253 107 DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLA----------NLKPRNMRGVKSNG 176 (270)
Q Consensus 107 dIrVGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~----------NLKprKmrGv~SeG 176 (270)
.|+||+|+++++||+ |||++++||+|+ .+||+||+.|+. .|.+|+++. +|++++|||+.|+|
T Consensus 6 gvvvg~I~~~~~hP~-~kL~~~~Vd~g~--~~~IV~ga~Nv~-----~g~~v~vA~~Ga~lp~~g~~I~~~kirGv~S~G 77 (113)
T d1jjcb3 6 GVVFARVLEAHPIPG-TRLKRLVLDAGR--TVEVVSGAENAR-----KGIGVALALPGTELPGLGQKVGERVIQGVRSFG 77 (113)
T ss_dssp TEEEEEEEEEEECTT-SSCEEEEEESSS--EEEEEECCTTCC-----TTCEEEEECTTCCCTTCSSCCCEEEETTEEEES
T ss_pred CEEEEEEEEeEeCCC-CcEEEEEECCCC--EEEEEeCCchhh-----cCcEEEEEecccccCcccceeccceecCEeeee
Confidence 599999999999996 899999999984 689999999998 899999972 69999999999999
Q ss_pred EEeeecc----CCCCcEEEEcCCCC-CCCCceE
Q 024253 177 MLLAASD----AAHENVELLEPPQG-SVPGERI 204 (270)
Q Consensus 177 MLL~ase----~~~~~VelL~PP~~-a~~G~rV 204 (270)
|||+++| ++++++.+| |++ .++|+++
T Consensus 78 MlcS~~ELGl~~~~~GI~~L--~~d~~~~G~~~ 108 (113)
T d1jjcb3 78 MALSPRELGVGEYGGGLLEF--PEDALPPGTPL 108 (113)
T ss_dssp EECCHHHHTSCSCCSSCCCB--CTTSSCTTCBG
T ss_pred EEecHHHcCCCCCCCcEEEe--CCCCCCCCCch
Confidence 9999985 356776555 776 4899986
No 8
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.55 E-value=11 Score=23.55 Aligned_cols=12 Identities=33% Similarity=0.720 Sum_probs=10.3
Q ss_pred CCCCceEEeCCC
Q 024253 198 SVPGERIWFGSQ 209 (270)
Q Consensus 198 a~~G~rV~f~~~ 209 (270)
.++||||+|.|-
T Consensus 10 FP~GDRVTFnGK 21 (40)
T d1v6ga2 10 FPPGDRVTFNGK 21 (40)
T ss_dssp CCSSSCEEEETT
T ss_pred CCCCCeEEEcCc
Confidence 689999999774
No 9
>d2rcfa1 b.40.15.1 (A:1-82) Carboxysome shell protein {Thiobacillus neapolitanus [TaxId: 927]}
Probab=25.18 E-value=65 Score=22.47 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=29.1
Q ss_pred eEEEEEEEEEeCCCCC--ceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEEE
Q 024253 108 IRVGRIIKAWRHEEAD--SLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVLA 162 (270)
Q Consensus 108 IrVGkIvev~~HP~AD--KLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv~ 162 (270)
=++|.|++-.+||.-. ||.+++- -+.....|+.-....- .|.+|++..
T Consensus 5 rViG~vvsT~K~~~L~g~kLlvv~~--~~~g~~~VA~D~vGAG-----~Ge~Vl~~~ 54 (82)
T d2rcfa1 5 QVEKTLVSTNRIADMGHKPLLVVWE--KPGAPRQVAVDAIGCI-----PGDWVLCVG 54 (82)
T ss_dssp EEEEECCSEEECTTSCSSCEEEEES--STTSCCEEEEESSCCC-----TTCEEEEEE
T ss_pred EEEeEEEEeeEcCCCCCCEEEEEEE--CCCCcEEEEEeCCCCC-----CCCEEEEeC
Confidence 3789999999999754 4655542 2222334554444444 677777754
No 10
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]}
Probab=21.70 E-value=95 Score=21.83 Aligned_cols=44 Identities=23% Similarity=0.004 Sum_probs=30.3
Q ss_pred EEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCccccc--CcccCCCCEEEEE
Q 024253 110 VGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYV--PLDFLQDRSVVVL 161 (270)
Q Consensus 110 VGkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~--~~eeL~GkkVvVv 161 (270)
-|||++++. ..-+||+|. ..|.|.-.+..-. +++-..|++|+|-
T Consensus 6 P~kV~~i~~-------~~A~vd~~G-v~r~v~l~lv~~~~~~~e~~vGDyVLVH 51 (90)
T d2ot2a1 6 PGQIRTIDG-------NQAKVDVCG-IQRDVDLTLVGSCDENGQPRVGQWVLVH 51 (90)
T ss_dssp EEEEEEECS-------SEEEEECSS-SEEEEECTTTCSBCTTSCBCTTCEEEEE
T ss_pred cEEEEEEcC-------CEEEEEeCC-cEEEEEEeccccccCCcccCCCCEEEEe
Confidence 478888843 168899985 6677776665422 2455689999984
No 11
>d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=20.40 E-value=99 Score=20.76 Aligned_cols=39 Identities=28% Similarity=0.289 Sum_probs=27.4
Q ss_pred EEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCcccccCcccCCCCEEEEE
Q 024253 111 GRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLDFLQDRSVVVL 161 (270)
Q Consensus 111 GkIvev~~HP~ADKLyv~kVDvGe~~~RtIvSGl~n~~~~eeL~GkkVvVv 161 (270)
|||++++. ..-.||+|. ..|.|.-.+.. |--.|++|++-
T Consensus 6 ~~Vv~i~~-------~~A~vd~~G-~~r~v~l~lv~----e~~vGDyVLVh 44 (71)
T d2z1ca1 6 GKVIEVNG-------PVAVVDFGG-VKREVRLDLMP----DTKPGDWVIVH 44 (71)
T ss_dssp EEEEEEET-------TEEEEEETT-EEEEEECTTST----TCCTTCEEEEE
T ss_pred EEEEEECC-------CEEEEEcCC-eEEEEEEEeeC----CCCCCCEEEEe
Confidence 78888842 167889884 67888776652 23389999984
Done!