BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024255
MALSLLPVSSPTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFL
WVSPSSSSSSLSVCWASNGGGGDLGRDNYEEDDEAGDESEADDDGDEYDEEISGSASVLP
ERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGG
SLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTT
GTVIVLTTPDAQRAMLAYQVSFQRSIRNKN

High Scoring Gene Products

Symbol, full name Information P value
NARA5
GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5
protein from Arabidopsis thaliana 6.6e-58
SPO_3582
kinase, pfkB family
protein from Ruegeria pomeroyi DSS-3 7.1e-14
adkb
adenosine kinase b
gene_product from Danio rerio 0.00034

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024255
        (270 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2137782 - symbol:NARA5 "GENES NECESSARY FOR TH...   595  6.6e-58   1
TIGR_CMR|SPO_3582 - symbol:SPO_3582 "kinase, pfkB family"...   183  7.1e-14   1
ZFIN|ZDB-GENE-030131-948 - symbol:adkb "adenosine kinase ...   112  0.00034   1


>TAIR|locus:2137782 [details] [associations]
            symbol:NARA5 "GENES NECESSARY FOR THE  ACHIEVEMENT OF
            RUBISCO ACCUMULATION 5" species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0016301 "kinase
            activity" evidence=ISS] [GO:0016773 "phosphotransferase activity,
            alcohol group as acceptor" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0015979 "photosynthesis" evidence=IMP]
            [GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
            metabolic process" evidence=RCA] [GO:0042793 "transcription from
            plastid promoter" evidence=RCA] InterPro:IPR002173 PROSITE:PS00584
            Pfam:PF00294 GO:GO:0009507 EMBL:CP002687 GO:GO:0016301
            GO:GO:0016773 InterPro:IPR011611 GO:GO:0015979 HSSP:Q9TVW2
            EMBL:AY052355 EMBL:AY059658 IPI:IPI00532244 RefSeq:NP_567780.1
            UniGene:At.2798 ProteinModelPortal:Q940Y6 SMR:Q940Y6 IntAct:Q940Y6
            STRING:Q940Y6 EnsemblPlants:AT4G27600.1 GeneID:828871
            KEGG:ath:AT4G27600 TAIR:At4g27600 InParanoid:Q940Y6 OMA:DPFCVER
            PhylomeDB:Q940Y6 ProtClustDB:PLN02813 Genevestigator:Q940Y6
            Uniprot:Q940Y6
        Length = 471

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 133/260 (51%), Positives = 153/260 (58%)

Query:     1 MALSLL-PVSSPTFXXXXXXXXXXXXXXXRTKLQALVFRKFSLGKERVRXXXXXXXXXXX 59
             MA SLL P+ +                   + L  L       G  R R           
Sbjct:     1 MAFSLLSPIPTSASLFFTLSAITASNNASSSSLSRLYSLYHPKGTLRTRTATSFFGASGN 60

Query:    60 LWVXXXXXXXXXXVCWASNGGGGDLGRDNXXXXXXXXXXXXXXXXXXXXXXXISGSASVL 119
             L +          VC    G G +L  D+                        + S++  
Sbjct:    61 LRIVSMAENRQL-VCRIGGGAGAEL--DDMDEGEIQRIGNEDEDDDEFIQVHANNSSAAS 117

Query:   120 PERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAG 179
             PERWDVLGLGQAMVDFSG+VDD+FL++LGLEKGTRKL+NHEERG++L+AMDGCSYKAAAG
Sbjct:   118 PERWDVLGLGQAMVDFSGVVDDEFLKKLGLEKGTRKLINHEERGKLLQAMDGCSYKAAAG 177

Query:   180 GSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGT 239
             GSLSN+LVALARLG + I    LNVAM GS+G DPLG FY  KLRRANV F S PIKDGT
Sbjct:   178 GSLSNTLVALARLGSQSICDRPLNVAMAGSIGGDPLGSFYGTKLRRANVNFLSAPIKDGT 237

Query:   240 TGTVIVLTTPDAQRAMLAYQ 259
             TGTVIVLTTPDAQR MLAYQ
Sbjct:   238 TGTVIVLTTPDAQRTMLAYQ 257


>TIGR_CMR|SPO_3582 [details] [associations]
            symbol:SPO_3582 "kinase, pfkB family" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0008152 "metabolic process"
            evidence=ISS] [GO:0016301 "kinase activity" evidence=ISS]
            Pfam:PF00294 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0016301
            InterPro:IPR011611 OMA:DPFCVER HOGENOM:HOG000235949
            RefSeq:YP_168777.1 ProteinModelPortal:Q5LMI1 GeneID:3193718
            KEGG:sil:SPO3582 PATRIC:23380641 ProtClustDB:CLSK934217
            Uniprot:Q5LMI1
        Length = 328

 Score = 183 (69.5 bits), Expect = 7.1e-14, P = 7.1e-14
 Identities = 45/137 (32%), Positives = 71/137 (51%)

Query:   123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSL 182
             +DV+G+G A+VD     DD FL+ +G+EKG  +L+  +ERG VL A      +   GGS+
Sbjct:     4 YDVVGIGNAVVDVISQADDSFLDLMGIEKGIMQLIE-QERGEVLYASMKERVQTP-GGSV 61

Query:   183 SNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIK-DGTTG 241
             +N++     LG        L+ A  G V  D LG FY   +    + F + P+  +  T 
Sbjct:    62 ANTIAGAGALG--------LDTAFIGRVRDDALGHFYADAMNEGGIDFVNPPVAGELATS 113

Query:   242 TVIVLTTPDAQRAMLAY 258
               ++  +PD +R+M  Y
Sbjct:   114 RSMIFVSPDGERSMNTY 130


>ZFIN|ZDB-GENE-030131-948 [details] [associations]
            symbol:adkb "adenosine kinase b" species:7955
            "Danio rerio" [GO:0016773 "phosphotransferase activity, alcohol
            group as acceptor" evidence=IEA] [GO:0004001 "adenosine kinase
            activity" evidence=IEA] [GO:0006166 "purine ribonucleoside salvage"
            evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
            [GO:0016301 "kinase activity" evidence=IEA] InterPro:IPR001805
            InterPro:IPR002173 PRINTS:PR00989 PROSITE:PS00584 Pfam:PF00294
            ZFIN:ZDB-GENE-030131-948 eggNOG:COG0524 HOGENOM:HOG000172419
            KO:K00856 GO:GO:0004001 GO:GO:0016773 InterPro:IPR011611
            PANTHER:PTHR10584:SF24 HSSP:P55263 GO:GO:0006166 HOVERGEN:HBG002367
            OrthoDB:EOG4S4PGM GO:GO:0006167 EMBL:BC051621 IPI:IPI00510021
            RefSeq:NP_942097.1 UniGene:Dr.77153 ProteinModelPortal:Q7ZTT5
            SMR:Q7ZTT5 STRING:Q7ZTT5 PRIDE:Q7ZTT5 GeneID:322229 KEGG:dre:322229
            CTD:322229 InParanoid:Q7ZTT5 NextBio:20807725 ArrayExpress:Q7ZTT5
            Bgee:Q7ZTT5 Uniprot:Q7ZTT5
        Length = 345

 Score = 112 (44.5 bits), Expect = 0.00034, P = 0.00034
 Identities = 38/134 (28%), Positives = 63/134 (47%)

Query:   125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
             + G+G  ++D S +VD DFL++ GL+   + L   + +      ++    +  AGGS  N
Sbjct:     9 LFGMGNPLLDISAVVDKDFLDKYGLKPNDQILAEEKHKALFDEIVNKSKVEYHAGGSTQN 68

Query:   185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANV-AFCSEPIKDGTTGTV 243
             S V +A+     I  P       G +G+D  G   + K   A+V A   E  ++  TGT 
Sbjct:    69 S-VKIAQW---MIQEPHKVATFFGCIGTDHFGEILKQKAAEAHVDAHYYEQNQE-PTGTC 123

Query:   244 IVLTTPDAQRAMLA 257
                 T D  R+++A
Sbjct:   124 AACITGD-NRSLVA 136


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      270       211   0.00081  112 3  11 22  0.36    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.18u 0.14s 15.32t   Elapsed:  00:00:01
  Total cpu time:  15.18u 0.14s 15.32t   Elapsed:  00:00:01
  Start:  Thu May  9 20:37:01 2013   End:  Thu May  9 20:37:02 2013

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