BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024255
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 13/139 (9%)
Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181
++DVL +G A+VD DD FLE G+ KG L+N +R +L + G + + A+GGS
Sbjct: 5 KYDVLTIGNAIVDIIARCDDSFLEENGIIKGAXNLIN-ADRAELLYSRXGPAVE-ASGGS 62
Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGT-- 239
N+ +A LGG+ A G V D LG + +R V F ++P+ DG
Sbjct: 63 AGNTAAGVASLGGR--------AAYFGKVADDQLGEIFTHDIRAQGVHFQTKPL-DGHPP 113
Query: 240 TGTVIVLTTPDAQRAMLAY 258
T + T D +R+ Y
Sbjct: 114 TARSXIFVTEDGERSXNTY 132
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181
R+DVL +G A+VD +D FL + K L++ ER +L + G + + A+GGS
Sbjct: 25 RFDVLTVGNAIVDIISRCNDQFLIDNQITKAAXNLID-AERAELLYSRXGPALE-ASGGS 82
Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGT-- 239
N+ +A LGGK A G+V +D LG + +R V + ++P G
Sbjct: 83 AGNTAAGVANLGGK--------AAYFGNVAADQLGDIFTHDIRAQGVHYQTKP--KGAFP 132
Query: 240 -TGTVIVLTTPDAQRAMLAY 258
T + T D +R+ Y
Sbjct: 133 PTARSXIFVTEDGERSXNTY 152
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
+ G+G ++D S +VD DFL++ L+ + L + + + + AGGS N
Sbjct: 9 LFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQN 68
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVI 244
S+ ++ I P G +G D G + K A+V + TGT
Sbjct: 69 SI----KVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCA 124
Query: 245 VLTTPDAQRAMLA 257
T D R+++A
Sbjct: 125 ACITGD-NRSLIA 136
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V +G ++D V FL+ L++G L E+ R+ +D + + GGS N
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQFNPTSLPGGSALN 73
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA--FCSEPIKDGTTGT 242
S+ + +L KP G A G++G DP G + + +A F P + +TGT
Sbjct: 74 SVRVVQKLLRKP--GSA---GYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQ--STGT 126
Query: 243 VIVL 246
VL
Sbjct: 127 CAVL 130
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V +G ++D V FL+ L++G L E+ R+ +D + + GGS N
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQFNPTSLPGGSALN 73
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA--FCSEPIKDGTTGT 242
S+ + +L KP G A G++G DP G + + +A F P + +TGT
Sbjct: 74 SVRVVQKLLRKP--GSA---GYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQ--STGT 126
Query: 243 VIVL 246
VL
Sbjct: 127 CAVL 130
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V +G ++D V FL+ L++G L E+ R+ +D + + GGS N
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQFNPTSLPGGSALN 73
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLG 216
S+ + +L KP G A G++G DP G
Sbjct: 74 SVRVVQKLLRKP--GSA---GYMGAIGDDPRG 100
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V +G ++D V FL+ L++G L E+ R+ +D + + GGS N
Sbjct: 35 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQFNPTSLPGGSALN 93
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLG 216
S+ + +L KP G A G++G DP G
Sbjct: 94 SVRVVQKLLRKP--GSA---GYMGAIGDDPRG 120
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
++GLG ++D S +V+ D L + ++ L + ++ + AGGS+ N
Sbjct: 26 LVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQN 85
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVI 244
SL + +P G VG D + V + TGT
Sbjct: 86 SLRVAQWILQRP-----RTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCA 140
Query: 245 VLTTPDAQRAMLA 257
VL T QR++ A
Sbjct: 141 VLVT-GTQRSLCA 152
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 179 GGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG 238
GG+ N VALARLG K V G VG D LG +LR V G
Sbjct: 33 GGAEVNVAVALARLGVK--------VGFVGRVGEDELGAMVEERLRAEGVDLTHFRRAPG 84
Query: 239 TTGTVIVLTTPDAQRAMLAYQ 259
TG + P Q + Y+
Sbjct: 85 FTGLYLREYLPLGQGRVFYYR 105
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 132 MVDFSGMVDDDFLERLGLEKGTRKLVNHEERG 163
++D S V D+FL + GLE+GT L++ ++G
Sbjct: 17 LLDVSAHVSDEFLVKYGLERGTAILLSERQKG 48
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 174 YKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANV 228
++ GG+ +N V ++RLG K ++ VG+DP G + +L + NV
Sbjct: 28 FEKHPGGAPANVAVGVSRLGVKS--------SLISKVGNDPFGEYLIEELSKENV 74
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 174 YKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANV 228
++ GG+ +N V ++RLG K ++ VG+DP G + +L + NV
Sbjct: 28 FEKHPGGAPANVAVGVSRLGVKS--------SLISKVGNDPFGEYLIEELSKENV 74
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCS 232
SY GG+ +N V +ARLGG+ G +G D G F R + V
Sbjct: 44 SYLKCPGGASANVGVCVARLGGE--------CGFIGCLGDDDAGRFLRQVFQDNGVDVTF 95
Query: 233 EPIK-DGTTGTVIVLTTPDAQRAM 255
+ D T+ +IV T D +R+
Sbjct: 96 LRLDADLTSAVLIVNLTADGERSF 119
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCS 232
SY GG+ +N V +ARLGG+ G +G D G F R + V
Sbjct: 44 SYLKCPGGASANVGVCVARLGGE--------CGFIGCLGDDDAGRFLRQVFQDNGVDVTF 95
Query: 233 EPIK-DGTTGTVIVLTTPDAQRAM 255
+ D T+ +IV T D +R+
Sbjct: 96 LRLDADLTSAVLIVNLTADGERSF 119
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 167 RAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRA 226
+ G Y+ A GG +N VA R G N+A G D +G R +L
Sbjct: 29 ETVTGNHYQVAFGGKGANQAVAAGRSGA--------NIAFIACTGDDSIGESVRQQLATD 80
Query: 227 NVAFCS-EPIKDGTTGTVIVLTTPDAQRAM 255
N+ IK +TG ++ + + +
Sbjct: 81 NIDITPVSVIKGESTGVALIFVNGEGENVI 110
>pdb|2VSG|A Chain A, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
pdb|2VSG|B Chain B, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
Length = 358
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 168 AMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202
A DG +Y +A G SN A+A G KP+ P L
Sbjct: 113 ATDGTTYCLSASGQGSNGNAAMASQGCKPLALPEL 147
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 123 WDVLGLGQAMVDFSGMVDDDF----LERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAA- 177
W+VL LG+ D + ++ DF L RL L + + LV + + A+ Y A
Sbjct: 154 WEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVK--KHAQTFLALCATDYTFAM 211
Query: 178 ------AGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSD 213
A GS+ A+ LG + G L + G G++
Sbjct: 212 YPPSMIATGSIG---AAVQGLGACSMSGDELTELLAGITGTE 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,260,961
Number of Sequences: 62578
Number of extensions: 216858
Number of successful extensions: 436
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 21
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)