Query 024255
Match_columns 270
No_of_seqs 168 out of 1422
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02813 pfkB-type carbohydrat 99.9 4.2E-25 9.1E-30 214.2 15.1 163 102-264 49-211 (426)
2 PRK15074 inosine/guanosine kin 99.9 5.2E-23 1.1E-27 200.7 13.1 137 120-264 31-173 (434)
3 PLN02379 pfkB-type carbohydrat 99.9 1.2E-21 2.6E-26 186.3 12.9 138 118-263 15-163 (367)
4 PTZ00247 adenosine kinase; Pro 99.8 5.8E-20 1.3E-24 171.2 11.8 136 120-264 3-142 (345)
5 KOG2854 Possible pfkB family c 99.8 2.6E-19 5.6E-24 168.7 9.7 136 124-265 8-143 (343)
6 cd01168 adenosine_kinase Adeno 99.8 5.6E-18 1.2E-22 154.6 12.8 130 123-264 2-132 (312)
7 PRK11142 ribokinase; Provision 99.7 4.3E-17 9.4E-22 147.6 13.5 114 123-264 3-117 (306)
8 PLN02548 adenosine kinase 99.7 1.9E-17 4.1E-22 152.9 11.1 127 128-263 1-130 (332)
9 cd01944 YegV_kinase_like YegV- 99.7 7.7E-17 1.7E-21 145.1 12.6 111 124-263 1-111 (289)
10 PTZ00292 ribokinase; Provision 99.7 1.4E-16 3E-21 146.6 13.8 116 120-263 13-130 (326)
11 cd01174 ribokinase Ribokinase 99.7 3.1E-16 6.8E-21 140.6 13.1 112 124-263 1-113 (292)
12 cd01939 Ketohexokinase Ketohex 99.7 6E-16 1.3E-20 139.9 12.6 112 124-263 1-113 (290)
13 cd01942 ribokinase_group_A Rib 99.7 6.8E-16 1.5E-20 137.5 12.6 113 124-264 1-114 (279)
14 KOG2855 Ribokinase [Carbohydra 99.7 4E-16 8.7E-21 147.6 10.7 117 121-265 8-125 (330)
15 PLN02323 probable fructokinase 99.7 7.2E-16 1.6E-20 142.3 11.9 107 121-259 9-116 (330)
16 COG0524 RbsK Sugar kinases, ri 99.6 8.4E-16 1.8E-20 140.0 11.3 111 124-261 1-112 (311)
17 cd01947 Guanosine_kinase_like 99.6 1.5E-15 3.2E-20 135.2 12.5 109 124-261 1-109 (265)
18 PRK09850 pseudouridine kinase; 99.6 1.3E-15 2.9E-20 139.7 12.0 110 120-258 2-112 (313)
19 PLN02543 pfkB-type carbohydrat 99.6 2.2E-15 4.8E-20 149.6 13.2 115 123-256 126-243 (496)
20 PLN02967 kinase 99.6 4.7E-15 1E-19 149.6 14.5 119 123-263 197-321 (581)
21 cd01166 KdgK 2-keto-3-deoxyglu 99.6 5.8E-15 1.3E-19 132.2 11.1 104 124-260 1-105 (294)
22 PF00294 PfkB: pfkB family car 99.6 5.7E-15 1.2E-19 132.2 9.8 114 123-266 2-116 (301)
23 cd01167 bac_FRK Fructokinases 99.6 1.2E-14 2.5E-19 130.6 11.6 105 124-264 1-106 (295)
24 cd01945 ribokinase_group_B Rib 99.6 2.1E-14 4.6E-19 128.5 13.0 112 124-264 1-113 (284)
25 PLN02341 pfkB-type carbohydrat 99.5 2.3E-14 5E-19 140.7 11.1 123 117-260 67-201 (470)
26 PRK09954 putative kinase; Prov 99.5 4.5E-14 9.8E-19 132.7 12.5 108 123-260 58-166 (362)
27 cd01941 YeiC_kinase_like YeiC- 99.5 3.4E-14 7.3E-19 127.2 11.0 104 124-256 1-104 (288)
28 TIGR02152 D_ribokin_bact ribok 99.5 5.3E-14 1.2E-18 126.7 12.1 108 129-264 1-109 (293)
29 PRK09813 fructoselysine 6-kina 99.5 3.9E-14 8.4E-19 126.5 10.2 99 123-264 1-100 (260)
30 PRK09434 aminoimidazole ribosi 99.5 1.3E-13 2.8E-18 125.3 12.0 97 124-259 4-101 (304)
31 cd01940 Fructoselysine_kinase_ 99.5 9.7E-14 2.1E-18 123.3 10.2 96 124-262 1-97 (264)
32 TIGR03828 pfkB 1-phosphofructo 99.5 4.2E-13 9.1E-18 121.3 10.8 105 127-262 4-108 (304)
33 cd01172 RfaE_like RfaE encodes 99.4 1.1E-12 2.5E-17 118.4 12.3 111 124-261 1-112 (304)
34 cd01943 MAK32 MAK32 kinase. M 99.4 7.2E-14 1.6E-18 130.6 4.4 100 124-263 1-106 (328)
35 cd01164 FruK_PfkB_like 1-phosp 99.4 2E-12 4.4E-17 116.7 11.2 106 126-262 4-109 (289)
36 TIGR02198 rfaE_dom_I rfaE bifu 99.4 2.2E-12 4.8E-17 117.6 11.2 104 120-250 5-111 (315)
37 cd01937 ribokinase_group_D Rib 99.4 3.3E-12 7.2E-17 113.0 10.7 97 124-264 1-97 (254)
38 PRK10294 6-phosphofructokinase 99.3 7.6E-12 1.6E-16 114.6 11.9 108 125-262 4-112 (309)
39 PRK11316 bifunctional heptose 99.3 7.5E-12 1.6E-16 121.6 12.1 106 121-252 9-115 (473)
40 PRK09513 fruK 1-phosphofructok 99.3 1.6E-11 3.4E-16 112.6 12.5 106 125-261 5-111 (312)
41 PRK13508 tagatose-6-phosphate 99.3 1.5E-11 3.2E-16 112.6 11.8 104 126-262 4-107 (309)
42 TIGR01231 lacC tagatose-6-phos 99.3 1.3E-11 2.8E-16 113.0 10.8 102 129-262 6-107 (309)
43 TIGR03168 1-PFK hexose kinase, 99.3 1.9E-11 4.1E-16 111.1 10.7 102 130-262 7-108 (303)
44 PLN02630 pfkB-type carbohydrat 99.1 6E-10 1.3E-14 105.6 12.0 95 122-265 11-110 (335)
45 cd01946 ribokinase_group_C Rib 99.0 1E-09 2.2E-14 98.7 7.0 76 124-240 1-77 (277)
46 KOG2947 Carbohydrate kinase [C 98.8 1.8E-08 4E-13 92.9 9.7 113 122-262 4-117 (308)
47 COG2870 RfaE ADP-heptose synth 98.4 1.5E-06 3.2E-11 85.1 9.9 102 121-247 9-110 (467)
48 cd00287 ribokinase_pfkB_like r 98.1 9.1E-06 2E-10 68.3 6.4 53 124-196 1-53 (196)
49 COG1105 FruK Fructose-1-phosph 98.0 2.1E-05 4.4E-10 74.8 8.5 102 130-262 8-110 (310)
50 KOG3009 Predicted carbohydrate 96.6 0.0029 6.2E-08 63.4 5.5 69 126-222 344-412 (614)
51 PF09026 CENP-B_dimeris: Centr 90.0 0.09 1.9E-06 42.5 0.0 20 97-116 26-45 (101)
52 KOG1832 HIV-1 Vpr-binding prot 76.8 1.2 2.6E-05 48.5 1.3 16 86-101 1401-1416(1516)
53 PF06524 NOA36: NOA36 protein; 72.1 6 0.00013 37.6 4.5 22 25-46 217-238 (314)
54 PF09026 CENP-B_dimeris: Centr 71.1 1.3 2.9E-05 35.9 0.0 27 86-112 10-38 (101)
55 PF14812 PBP1_TM: Transmembran 70.6 1.4 3E-05 34.6 0.0 9 109-117 48-56 (81)
56 KOG1832 HIV-1 Vpr-binding prot 47.0 8.8 0.00019 42.2 1.0 15 80-94 1398-1413(1516)
57 PF10446 DUF2457: Protein of u 41.7 14 0.0003 37.3 1.4 16 208-223 198-214 (458)
58 PRK14039 ADP-dependent glucoki 38.8 2.9E+02 0.0063 28.1 10.2 24 173-196 85-108 (453)
59 cd07242 Glo_EDI_BRP_like_6 Thi 38.0 92 0.002 23.8 5.4 45 215-259 81-128 (128)
60 cd07251 Glo_EDI_BRP_like_10 Th 35.3 1E+02 0.0022 23.0 5.1 45 214-258 76-120 (121)
61 TIGR00927 2A1904 K+-dependent 34.3 28 0.00061 38.6 2.4 8 78-85 854-861 (1096)
62 PF03066 Nucleoplasmin: Nucleo 33.8 14 0.0003 31.8 0.0 12 33-44 30-41 (149)
63 PF04931 DNA_pol_phi: DNA poly 33.7 22 0.00047 37.9 1.5 11 31-41 607-617 (784)
64 cd07266 HPCD_N_class_II N-term 33.2 1.3E+02 0.0029 22.7 5.6 49 210-258 68-117 (121)
65 cd08345 Fosfomycin_RP Fosfomyc 32.5 1E+02 0.0022 22.9 4.7 40 215-254 67-106 (113)
66 PF01973 MAF_flag10: Protein o 29.9 67 0.0015 27.1 3.6 28 175-209 135-163 (170)
67 cd07238 Glo_EDI_BRP_like_5 Thi 29.5 1.6E+02 0.0034 22.0 5.4 41 216-257 68-109 (112)
68 PF02044 Bombesin: Bombesin-li 29.1 17 0.00037 19.6 -0.1 9 47-55 5-13 (14)
69 PF06189 5-nucleotidase: 5'-nu 28.0 1E+02 0.0022 29.3 4.7 62 175-237 159-221 (264)
70 cd07245 Glo_EDI_BRP_like_9 Thi 27.7 1.3E+02 0.0028 21.6 4.4 37 216-253 75-111 (114)
71 cd08363 FosB FosB, a fosfomyci 27.5 1.5E+02 0.0032 23.5 5.1 47 215-261 71-117 (131)
72 cd07235 MRD Mitomycin C resist 27.4 2.1E+02 0.0045 21.7 5.8 42 215-257 79-121 (122)
73 cd07240 ED_TypeI_classII_N N-t 26.2 2E+02 0.0044 21.3 5.4 49 210-258 65-113 (117)
74 cd07261 Glo_EDI_BRP_like_11 Th 25.7 1.6E+02 0.0034 22.0 4.7 46 210-256 67-112 (114)
75 cd07263 Glo_EDI_BRP_like_16 Th 25.6 1.8E+02 0.0039 21.3 5.0 39 217-256 79-117 (119)
76 PF03456 uDENN: uDENN domain; 25.6 1.2E+02 0.0027 21.6 3.9 41 217-258 21-61 (65)
77 PHA03171 UL37 tegument protein 25.2 32 0.00069 34.6 0.9 36 85-120 83-119 (499)
78 KOG2652 RNA polymerase II tran 24.5 86 0.0019 30.8 3.6 27 109-139 290-317 (348)
79 KOG1824 TATA-binding protein-i 24.0 36 0.00079 37.8 1.1 29 91-119 319-349 (1233)
80 cd07241 Glo_EDI_BRP_like_3 Thi 23.8 1.6E+02 0.0035 21.9 4.5 45 209-254 77-122 (125)
81 cd07247 SgaA_N_like N-terminal 22.4 2.2E+02 0.0048 21.1 5.0 39 216-254 72-110 (114)
82 cd04868 ACT_AK-like ACT domain 22.0 2.2E+02 0.0049 18.1 4.5 32 215-246 16-47 (60)
83 KOG0943 Predicted ubiquitin-pr 21.8 47 0.001 38.2 1.4 21 86-106 1742-1762(3015)
84 PF12681 Glyoxalase_2: Glyoxal 21.7 1.6E+02 0.0035 21.5 4.0 40 215-254 66-105 (108)
85 PF00070 Pyr_redox: Pyridine n 21.6 1.4E+02 0.003 21.8 3.5 45 182-234 11-61 (80)
86 cd07233 Glyoxalase_I Glyoxalas 20.9 2E+02 0.0043 21.5 4.4 38 217-255 82-119 (121)
87 cd09012 Glo_EDI_BRP_like_24 Th 20.9 3.2E+02 0.0069 20.8 5.7 42 216-258 82-123 (124)
88 cd08354 Glo_EDI_BRP_like_13 Th 20.5 2.9E+02 0.0063 20.6 5.3 41 216-257 80-120 (122)
89 cd07265 2_3_CTD_N N-terminal d 20.4 2.9E+02 0.0064 20.9 5.4 42 216-257 75-117 (122)
No 1
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.93 E-value=4.2e-25 Score=214.15 Aligned_cols=163 Identities=74% Similarity=1.135 Sum_probs=143.4
Q ss_pred CCCCCCcccccccCCCCCCCCCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCCh
Q 024255 102 DDDGDEYDEEISGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181 (270)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGs 181 (270)
++|++|+|...+.+....+++++|++||++++|++..+++.|++++++++++++++++++..++++++.+..+...+||+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~ 128 (426)
T PLN02813 49 QQDEEQPEGFGPIPEKAVPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGS 128 (426)
T ss_pred cCCCCCccccCCCCcccCCCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcH
Confidence 44455556777888889999999999999999999999998999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCc
Q 024255 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVS 261 (270)
Q Consensus 182 AaNtAvaLARLG~~~~~~p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GA 261 (270)
++|+|++|+|||.+....++.+|.|+|+||+|.+|+++++.|++.||++.++...+.+||+++++++++|+|+|++|+|+
T Consensus 129 ~~N~AvalarLG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga 208 (426)
T PLN02813 129 LSNTLVALARLGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGT 208 (426)
T ss_pred HHHHHHHHHHhccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCc
Confidence 99999999999942222233347999999999999999999999999999887556799999999999999999999998
Q ss_pred ccc
Q 024255 262 FQR 264 (270)
Q Consensus 262 n~~ 264 (270)
+..
T Consensus 209 ~~~ 211 (426)
T PLN02813 209 SST 211 (426)
T ss_pred hhh
Confidence 744
No 2
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.89 E-value=5.2e-23 Score=200.67 Aligned_cols=137 Identities=23% Similarity=0.402 Sum_probs=123.0
Q ss_pred CCCCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCc--cEEecCChHHHHHHHHHHhC-CCC
Q 024255 120 PERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCS--YKAAAGGSLSNSLVALARLG-GKP 196 (270)
Q Consensus 120 ~~~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~--~~~~~GGsAaNtAvaLARLG-~~~ 196 (270)
.++++|++||++++|+.+.++++|+++++|++|.++++++|++..+++.+.... ....+||+++|+|++|+||| .+
T Consensus 31 ~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~~- 109 (434)
T PRK15074 31 TSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADDR- 109 (434)
T ss_pred CCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCCC-
Confidence 567999999999999999999999999999999999999988888888875433 45669999999999999996 77
Q ss_pred CCCCCcceEEEEEeCCC-chHHHHHHHHH--HcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcccc
Q 024255 197 IGGPALNVAMTGSVGSD-PLGGFYRAKLR--RANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQR 264 (270)
Q Consensus 197 ~~~p~~~V~fVG~VGdD-~~Ge~I~e~L~--e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn~~ 264 (270)
+.|+|+||+| .+|+++++.|+ ++||++.++...+++||+|+|+++++|+|+|++|+|++..
T Consensus 110 -------~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~VlV~~dGeRt~~t~~GA~~~ 173 (434)
T PRK15074 110 -------SVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISEDGERTFAISPGHMNQ 173 (434)
T ss_pred -------eEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEEEECCCCCEEEEEecChhhc
Confidence 5999999999 79999999997 6899999987555689999999999999999999998754
No 3
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.87 E-value=1.2e-21 Score=186.27 Aligned_cols=138 Identities=27% Similarity=0.362 Sum_probs=124.3
Q ss_pred CCCCCCcEEEEc-CcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCC---------ccEEecCChHHHHHH
Q 024255 118 VLPERWDVLGLG-QAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGC---------SYKAAAGGSLSNSLV 187 (270)
Q Consensus 118 ~~~~~~~VlvIG-~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~---------~~~~~~GGsAaNtAv 187 (270)
.-+++++|++|| ++++|++..+++.|++++++++|.++++++|++..+++.+... .....+||+++|+|+
T Consensus 15 ~~~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~ 94 (367)
T PLN02379 15 DGPRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIR 94 (367)
T ss_pred CCCCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHH
Confidence 346778999999 9999999999999999999999999999999999998887531 367789999999999
Q ss_pred HHHH-hCCCCCCCCCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCccc
Q 024255 188 ALAR-LGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQ 263 (270)
Q Consensus 188 aLAR-LG~~~~~~p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn~ 263 (270)
++++ ||.+ +.|+|+||+|.+|+++++.|++.||++.+++..+++|+.|+++++++|+|+|.+++|+..
T Consensus 95 ~la~~LG~~--------~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~ 163 (367)
T PLN02379 95 GLSAGFGVS--------TGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAV 163 (367)
T ss_pred HHHHhcCCC--------EEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccc
Confidence 9996 9998 599999999999999999999999999888665679999999999999999999888754
No 4
>PTZ00247 adenosine kinase; Provisional
Probab=99.82 E-value=5.8e-20 Score=171.20 Aligned_cols=136 Identities=24% Similarity=0.312 Sum_probs=117.0
Q ss_pred CCCCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhC---C-C
Q 024255 120 PERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLG---G-K 195 (270)
Q Consensus 120 ~~~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG---~-~ 195 (270)
|++++|+|||++++|++++++++|++++.+.+|+..+++++..+...+.+.+..+...+||+++|+|++++||| . +
T Consensus 3 ~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~ 82 (345)
T PTZ00247 3 SAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGF 82 (345)
T ss_pred CCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCc
Confidence 56789999999999999999988888887789998888755556556666566678899999999999999886 3 4
Q ss_pred CCCCCCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcccc
Q 024255 196 PIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQR 264 (270)
Q Consensus 196 ~~~~p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn~~ 264 (270)
|.|+|+||+|.+|+++++.|+++||++.++...+.+|++|++++++ |+|+|+.++|++..
T Consensus 83 --------v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~~-~~r~~~~~~ga~~~ 142 (345)
T PTZ00247 83 --------VCYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVCG-KERSLVANLGAANH 142 (345)
T ss_pred --------EEEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEcC-CCcccccCcchhhc
Confidence 7999999999999999999999999998875444589999999974 79999999998754
No 5
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.6e-19 Score=168.71 Aligned_cols=136 Identities=34% Similarity=0.483 Sum_probs=123.6
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
-.+++|++++|+...++.+|+++|+|+.|+.++++++++..+.+-+........+||++.|+++++++++.. |. +
T Consensus 8 il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~----p~-~ 82 (343)
T KOG2854|consen 8 ILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQ----PG-A 82 (343)
T ss_pred eeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccC----CC-c
Confidence 567799999999999999999999999999999999988888887877889999999999999999998763 11 3
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCccccc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQRS 265 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn~~~ 265 (270)
+.|+|+||.|.+|+++++.++++||++.|....+.+||.|.++++++. ||+++++||+..+
T Consensus 83 ~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~n-RSL~anLgAAn~f 143 (343)
T KOG2854|consen 83 TVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDN-RSLCANLGAANCF 143 (343)
T ss_pred eEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCC-cchhhccchhhcc
Confidence 799999999999999999999999999999888889999999999775 9999999987543
No 6
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.76 E-value=5.6e-18 Score=154.61 Aligned_cols=130 Identities=45% Similarity=0.639 Sum_probs=105.0
Q ss_pred CcEEEEcCcceeeEeecChhHH-HhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCC
Q 024255 123 WDVLGLGQAMVDFSGMVDDDFL-ERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPA 201 (270)
Q Consensus 123 ~~VlvIG~alVDii~~vd~~~p-e~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~ 201 (270)
.+|+++|++++|+++++++ +| +.+++++|+..+++.+...+..+ .......+||+++|+|++|+|||.+
T Consensus 2 ~~v~~vG~~~~D~~~~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~GG~~~N~A~~la~LG~~------ 71 (312)
T cd01168 2 YDVLGLGNALVDILAQVDD-AFLEKLGLKKGDMILADMEEQEELLA---KLPVKYIAGGSAANTIRGAAALGGS------ 71 (312)
T ss_pred ceEEEECCCeEEEEEecCH-HHHHHcCCCCCceeecCHHHHHHHHH---hcCccccCCCHHHHHHHHHHHhcCC------
Confidence 4799999999999999988 44 44555567666653221111110 1135678999999999999999998
Q ss_pred cceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcccc
Q 024255 202 LNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQR 264 (270)
Q Consensus 202 ~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn~~ 264 (270)
|.|+|.||+|.+|+.+++.|+++||++.++...+.+|+.++++++++|+|+++.++|++..
T Consensus 72 --~~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~ 132 (312)
T cd01168 72 --AAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANE 132 (312)
T ss_pred --eEEEEEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhc
Confidence 5999999999999999999999999999887654689999999999999999999987644
No 7
>PRK11142 ribokinase; Provisional
Probab=99.73 E-value=4.3e-17 Score=147.61 Aligned_cols=114 Identities=23% Similarity=0.348 Sum_probs=97.3
Q ss_pred CcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCc
Q 024255 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (270)
Q Consensus 123 ~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~ 202 (270)
.+|+++|.+++|++..++. +| .++.... ...+...+||+++|+|++|+|||.+
T Consensus 3 ~~i~~iG~~~~D~~~~~~~-~p-----~~~~~~~--------------~~~~~~~~GG~~~Nva~~la~lG~~------- 55 (306)
T PRK11142 3 GKLVVLGSINADHVLNLES-FP-----RPGETLT--------------GRHYQVAFGGKGANQAVAAARLGAD------- 55 (306)
T ss_pred CcEEEECCceeeEEEEeCC-CC-----CCCCeeE--------------eccceecCCCcHHHHHHHHHhcCCc-------
Confidence 4699999999999999887 54 2333222 2356778999999999999999998
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEEecCcccc
Q 024255 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLAYQVSFQR 264 (270)
Q Consensus 203 ~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~~~GAn~~ 264 (270)
+.++|.||+|.+|+.+++.|+++||+++++...+ .+|++++++++++|+|++++++|++..
T Consensus 56 -~~~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~ 117 (306)
T PRK11142 56 -IAFIACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAA 117 (306)
T ss_pred -EEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCcccc
Confidence 6999999999999999999999999999987665 489999999998999999999987543
No 8
>PLN02548 adenosine kinase
Probab=99.73 E-value=1.9e-17 Score=152.88 Aligned_cols=127 Identities=22% Similarity=0.326 Sum_probs=110.2
Q ss_pred EcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHH---HhCCCCCCCCCcce
Q 024255 128 LGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALA---RLGGKPIGGPALNV 204 (270)
Q Consensus 128 IG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLA---RLG~~~~~~p~~~V 204 (270)
+|++++|+++.+++.++++++|++|.+++...++.+...+.+........+||+++|+|+.++ +||.+ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~--------~ 72 (332)
T PLN02548 1 MGNPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGA--------T 72 (332)
T ss_pred CCCceeEEEEecCHHHHHHcCCCCCceeechHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCc--------E
Confidence 699999999999999999999999999987777666667777777889999999999866554 55776 6
Q ss_pred EEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCccc
Q 024255 205 AMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQ 263 (270)
Q Consensus 205 ~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn~ 263 (270)
.|+|.||+|.+|+++++.|++.||+++++...+.+|+.|+++++ +|+|+++++.+++.
T Consensus 73 ~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~-~g~r~~~~~~~~~~ 130 (332)
T PLN02548 73 SYMGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVV-GGERSLVANLSAAN 130 (332)
T ss_pred EEEEEEcCChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEe-cCCceeeeccchhh
Confidence 99999999999999999999999999987654468999999986 79999999887654
No 9
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.71 E-value=7.7e-17 Score=145.13 Aligned_cols=111 Identities=26% Similarity=0.338 Sum_probs=95.0
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|++++|++..+++ +| .++.... ...+...+|| ++|+|++|+|||.+
T Consensus 1 ~i~~iG~~~~D~i~~~~~-~~-----~~~~~~~--------------~~~~~~~~GG-~~Nva~~l~~lG~~-------- 51 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDK-LP-----ASGGDIE--------------AKSKSYVIGG-GFNVMVAASRLGIP-------- 51 (289)
T ss_pred CeEEEcceeEEEEeeccc-CC-----CCCCccc--------------cceeeeccCc-HHHHHHHHHHcCCC--------
Confidence 489999999999999876 55 2333211 2346788999 99999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCccc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQ 263 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn~ 263 (270)
+.|+|.||+|.+|+++++.|++.||+++++......|+.++++++++|+|++++++|++.
T Consensus 52 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~ 111 (289)
T cd01944 52 TVNAGPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQ 111 (289)
T ss_pred eEEEEEecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccC
Confidence 599999999999999999999999999998776568999899999899999999998763
No 10
>PTZ00292 ribokinase; Provisional
Probab=99.71 E-value=1.4e-16 Score=146.57 Aligned_cols=116 Identities=25% Similarity=0.367 Sum_probs=98.0
Q ss_pred CCCCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCC
Q 024255 120 PERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGG 199 (270)
Q Consensus 120 ~~~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~ 199 (270)
.++.+|+|+|.+++|+++.++. +| .++.... +..+...+||+++|+|++|+|||.+
T Consensus 13 ~~~~~vlviG~~~vD~~~~~~~-~~-----~~~~~~~--------------~~~~~~~~GG~~~NvA~~la~lG~~---- 68 (326)
T PTZ00292 13 EAEPDVVVVGSSNTDLIGYVDR-MP-----QVGETLH--------------GTSFHKGFGGKGANQAVMASKLGAK---- 68 (326)
T ss_pred CCCCCEEEEccceeeEEEecCC-CC-----CCCCcee--------------ecCceeCCCCcHHHHHHHHHHcCCC----
Confidence 3456899999999999999886 44 2333211 2345778999999999999999998
Q ss_pred CCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEc-CCCCeEEEEecCccc
Q 024255 200 PALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTT-PDAQRAMLAYQVSFQ 263 (270)
Q Consensus 200 p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~-~dGeRTiv~~~GAn~ 263 (270)
+.|++.||+|.+|+.+++.|++.||+++++...+ .+|++++++++ ++|+|++++++|++.
T Consensus 69 ----~~~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~ 130 (326)
T PTZ00292 69 ----VAMVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANN 130 (326)
T ss_pred ----eEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccc
Confidence 6999999999999999999999999999986554 58999999998 789999999998764
No 11
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.69 E-value=3.1e-16 Score=140.57 Aligned_cols=112 Identities=29% Similarity=0.431 Sum_probs=95.2
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|.+++|++..++. +| ..+.... .......+||+++|+|++|+|||.+
T Consensus 1 ~il~iG~~~~D~~~~~~~-~~-----~~~~~~~--------------~~~~~~~~GG~~~NvA~~l~~lG~~-------- 52 (292)
T cd01174 1 KVVVVGSINVDLVTRVDR-LP-----KPGETVL--------------GSSFETGPGGKGANQAVAAARLGAR-------- 52 (292)
T ss_pred CEEEEeeceeEEEEEecC-CC-----CCCCcEE--------------eccceecCCCcHHHHHHHHHHcCCc--------
Confidence 589999999999998876 44 1232211 2346788999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEEecCccc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLAYQVSFQ 263 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~~~GAn~ 263 (270)
+.|++.+|+|.+|+.+++.|++.||+++++.+.. .+|++++++++++|+|+++.+++++.
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~ 113 (292)
T cd01174 53 VAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANG 113 (292)
T ss_pred eEEEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCC
Confidence 6999999999999999999999999999986554 58999999999889999999998764
No 12
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.67 E-value=6e-16 Score=139.94 Aligned_cols=112 Identities=18% Similarity=0.231 Sum_probs=93.0
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
.|+|||++++|++..++. +| ..++...+ ......+||+++|+|++|+|||.+
T Consensus 1 ~v~~iG~~~vD~~~~v~~-~p-----~~~~~~~~--------------~~~~~~~GG~a~NvA~~la~lG~~-------- 52 (290)
T cd01939 1 AVLCVGLTVLDFITTVDK-YP-----FEDSDQRT--------------TNGRWQRGGNASNSCTVLRLLGLS-------- 52 (290)
T ss_pred CEEEEeeeeeEEEeeecC-CC-----CCCcceEe--------------eeeeEecCCCHHHHHHHHHHcCCc--------
Confidence 489999999999999987 55 23432222 234577999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCC-CCceEEEEEcCCCCeEEEEecCccc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TTGTVIVLTTPDAQRAMLAYQVSFQ 263 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g-~TG~~~VLv~~dGeRTiv~~~GAn~ 263 (270)
|.|+++||+|.+|+++++.|++.||++.++...+. .|..++++++++|+|+++++.++..
T Consensus 53 ~~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~ 113 (290)
T cd01939 53 CEFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLP 113 (290)
T ss_pred eEEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCC
Confidence 59999999999999999999999999999865554 6667888888889999999888753
No 13
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.67 E-value=6.8e-16 Score=137.55 Aligned_cols=113 Identities=28% Similarity=0.352 Sum_probs=95.6
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|++++|++..++. +|. .++... .......+||+++|+|++++|||.+
T Consensus 1 ~v~~iG~~~~D~~~~v~~-~p~-----~~~~~~--------------~~~~~~~~GG~~~Nva~~l~~lg~~-------- 52 (279)
T cd01942 1 DVAVVGHLNYDIILKVES-FPG-----PFESVL--------------VKDLRREFGGSAGNTAVALAKLGLS-------- 52 (279)
T ss_pred CEEEEecceeeeEeeccc-CCC-----CCceEe--------------cceeeecCCcHHHHHHHHHHHcCCC--------
Confidence 689999999999999887 551 222111 2356788999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEEecCcccc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLAYQVSFQR 264 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~~~GAn~~ 264 (270)
|.|+|.||+|.+|+++++.|++.||++.++...+ .+|+.++++++++|+|+++.++|++..
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
T cd01942 53 PGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDE 114 (279)
T ss_pred ceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccc
Confidence 5999999999999999999999999999986544 589999999998899999888887644
No 14
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=4e-16 Score=147.62 Aligned_cols=117 Identities=25% Similarity=0.355 Sum_probs=103.4
Q ss_pred CCCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCC
Q 024255 121 ERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGP 200 (270)
Q Consensus 121 ~~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p 200 (270)
.+..|+|+|++++|++..++. +| ..|+ ++.+..+...+||.++|+|++++|||.+
T Consensus 8 ~~~~vv~fGs~~~D~V~~~~~-~p-----~~ge--------------~~~~~~f~~~~GG~~aN~AvaaarLG~~----- 62 (330)
T KOG2855|consen 8 EPPLVVVFGSMLIDFVPSTRR-LP-----NAGE--------------TWEPPGFKTAPGGKGANQAVAAARLGGR----- 62 (330)
T ss_pred CCceEEEeccceeeeeecccc-CC-----Cccc--------------cccCCcceecCCCcchhhhhHHHhcCcc-----
Confidence 557899999999999999887 44 2232 3445678899999999999999999999
Q ss_pred CcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCC-CCceEEEEEcCCCCeEEEEecCccccc
Q 024255 201 ALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TTGTVIVLTTPDAQRAMLAYQVSFQRS 265 (270)
Q Consensus 201 ~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g-~TG~~~VLv~~dGeRTiv~~~GAn~~~ 265 (270)
++|||+||+|.+|+.+.+.|++.+|+++++...+. .|+++.|.+..+|++.++.+.|++..-
T Consensus 63 ---~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~ 125 (330)
T KOG2855|consen 63 ---VAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADM 125 (330)
T ss_pred ---eeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhc
Confidence 59999999999999999999999999999998775 999999999999999999999988653
No 15
>PLN02323 probable fructokinase
Probab=99.66 E-value=7.2e-16 Score=142.28 Aligned_cols=107 Identities=28% Similarity=0.458 Sum_probs=91.5
Q ss_pred CCCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCC
Q 024255 121 ERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGP 200 (270)
Q Consensus 121 ~~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p 200 (270)
+..+|++||++++|++..++. ++. . ....+...+||+++|+|++|+|||.+
T Consensus 9 ~~~~i~~iG~~~vD~~~~~~~-~~~-----------~------------~~~~~~~~~GG~~~NvA~~la~LG~~----- 59 (330)
T PLN02323 9 ESSLVVCFGEMLIDFVPTVSG-VSL-----------A------------EAPAFKKAPGGAPANVAVGISRLGGS----- 59 (330)
T ss_pred CCCcEEEechhhhhhccCCCC-CCc-----------c------------cccceeecCCChHHHHHHHHHhcCCc-----
Confidence 456899999999999877654 220 0 01245678999999999999999998
Q ss_pred CcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCC-CCceEEEEEcCCCCeEEEEec
Q 024255 201 ALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TTGTVIVLTTPDAQRAMLAYQ 259 (270)
Q Consensus 201 ~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g-~TG~~~VLv~~dGeRTiv~~~ 259 (270)
|.++|.||+|.+|+++++.|++.||+++++.+.++ +|++++++++++|+|++++++
T Consensus 60 ---~~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~ 116 (330)
T PLN02323 60 ---SAFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYR 116 (330)
T ss_pred ---eeEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeec
Confidence 59999999999999999999999999999877664 899999999989999999985
No 16
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.65 E-value=8.4e-16 Score=140.03 Aligned_cols=111 Identities=40% Similarity=0.598 Sum_probs=94.2
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|++++|++....+.+|. .+.... ...+...+||+++|+|++++|||.+
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~-----~~~~~~--------------~~~~~~~~GG~~~N~A~~~a~lG~~-------- 53 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPE-----PGETVL--------------GDFFKVAGGGKGANVAVALARLGAK-------- 53 (311)
T ss_pred CEEEECchhhheehhhccCCCC-----Cccccc--------------ccceeecCCchHHHHHHHHHHcCCc--------
Confidence 4899999999999975442442 222111 1235678999999999999999999
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCC-CCceEEEEEcCCCCeEEEEecCc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TTGTVIVLTTPDAQRAMLAYQVS 261 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g-~TG~~~VLv~~dGeRTiv~~~GA 261 (270)
+.|+|+||+|.+|+.+++.|++.||+++++..... +|+.++++++++|+|+|++++++
T Consensus 54 ~~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~ 112 (311)
T COG0524 54 VALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGA 112 (311)
T ss_pred eEEEEEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCc
Confidence 59999999999999999999999999999988776 99999999999999999999996
No 17
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.65 E-value=1.5e-15 Score=135.19 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=92.5
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|.+++|++..++. +| .++.... ...+...+||+++|+|++|+|||.+
T Consensus 1 ~il~iG~~~iD~~~~~~~-~~-----~~~~~~~--------------~~~~~~~~GG~~~Nva~~l~~lG~~-------- 52 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDA-PP-----QPGGISH--------------SSDSRESPGGGGANVAVQLAKLGND-------- 52 (265)
T ss_pred CEEEEeeeeEEEEEEecC-CC-----CCCceee--------------cccceeecCchHHHHHHHHHHcCCc--------
Confidence 589999999999999876 33 2333222 2356789999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVS 261 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GA 261 (270)
+.++|.||+|.+|+.+++.|++ ++++.+++..+..|++++++++++|+|+++.+.+.
T Consensus 53 ~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~ 109 (265)
T cd01947 53 VRFFSNLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFIDPNGERTITVPGER 109 (265)
T ss_pred eEEEEEecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEECCCCcceEEecCCC
Confidence 5999999999999999999999 99999887666789999999998999999887654
No 18
>PRK09850 pseudouridine kinase; Provisional
Probab=99.64 E-value=1.3e-15 Score=139.75 Aligned_cols=110 Identities=24% Similarity=0.210 Sum_probs=91.1
Q ss_pred CCCCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCC
Q 024255 120 PERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGG 199 (270)
Q Consensus 120 ~~~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~ 199 (270)
.++..|+|+|++++|+++.++. .+ ..+.. . .......+||+++|+|++|+|||.+
T Consensus 2 ~~~~~i~~iG~~~vD~~~~~~~-~~-----~~~~~-~--------------~~~~~~~~GG~~~NvA~~l~~lG~~---- 56 (313)
T PRK09850 2 REKDYVVIIGSANIDVAGYSHE-SL-----NYADS-N--------------PGKIKFTPGGVGRNIAQNLALLGNK---- 56 (313)
T ss_pred CCCCcEEEECcEEEeeeccCCC-cC-----cCCCC-C--------------ceEEEEeCCcHHHHHHHHHHHcCCC----
Confidence 4567999999999999988644 11 11211 1 1235678999999999999999998
Q ss_pred CCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCC-CCceEEEEEcCCCCeEEEEe
Q 024255 200 PALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TTGTVIVLTTPDAQRAMLAY 258 (270)
Q Consensus 200 p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g-~TG~~~VLv~~dGeRTiv~~ 258 (270)
+.|+|.||+|.+|+++++.|++.||+++++...++ +|++++++++++|+|++.++
T Consensus 57 ----~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~ 112 (313)
T PRK09850 57 ----AWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAIN 112 (313)
T ss_pred ----eEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEec
Confidence 59999999999999999999999999998866665 79999999999999988775
No 19
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.63 E-value=2.2e-15 Score=149.57 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=84.4
Q ss_pred CcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCc
Q 024255 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (270)
Q Consensus 123 ~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~ 202 (270)
..|+|+|++++|++...... .. ++.+. +. ++... -++....+...+||+++|+|++|+|||.+
T Consensus 126 ~~v~~~Ge~liDf~~~~~~~-~~--~~~~~---~~--~~~~~--~~~~~~~f~~~~GGa~aNVAvaLARLG~~------- 188 (496)
T PLN02543 126 PLVCCFGAVQKEFVPTVRVH-DN--QMHPD---MY--SQWKM--LQWDPPEFARAPGGPPSNVAISHVRLGGR------- 188 (496)
T ss_pred CeEEEeChhhhhhcCCCccc-cc--ccccc---cc--ccccc--ccccCCeeEeccCcHHHHHHHHHHHCCCC-------
Confidence 35999999999999764220 00 00000 00 00000 01123467888999999999999999999
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCC-CCceEEEEEc--CCCCeEEE
Q 024255 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TTGTVIVLTT--PDAQRAML 256 (270)
Q Consensus 203 ~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g-~TG~~~VLv~--~dGeRTiv 256 (270)
++|+|+||+|.+|+++++.|+++||+++++.+.+. +|++++|+++ ++| |.++
T Consensus 189 -vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~ 243 (496)
T PLN02543 189 -AAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVA 243 (496)
T ss_pred -EEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEE
Confidence 59999999999999999999999999999987764 8999999984 445 5554
No 20
>PLN02967 kinase
Probab=99.62 E-value=4.7e-15 Score=149.57 Aligned_cols=119 Identities=24% Similarity=0.190 Sum_probs=91.6
Q ss_pred CcEEEEcCcceeeEeecCh--hHHHhhccCCCceeeeccccccceee--eccCCccEEecCChHHHHHHHHHHhCCCCCC
Q 024255 123 WDVLGLGQAMVDFSGMVDD--DFLERLGLEKGTRKLVNHEERGRVLR--AMDGCSYKAAAGGSLSNSLVALARLGGKPIG 198 (270)
Q Consensus 123 ~~VlvIG~alVDii~~vd~--~~pe~~~L~~G~~~lv~~ee~~~l~e--~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~ 198 (270)
..|+|||.+++|++..... .+.. + |.+.-++ +.....+...+||+++|+|++|+|||.+
T Consensus 197 ~~V~~iGe~l~D~~p~g~~~~~l~~------~--------~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~--- 259 (581)
T PLN02967 197 PLVCCFGAAQHAFVPSGRPANRLLD------Y--------EIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGK--- 259 (581)
T ss_pred CeEEEECchhheecccCccchhhhh------c--------cccccccccccCccceeeecCcHHHHHHHHHHHCCCC---
Confidence 4699999999999764311 0110 0 0000000 1122457788999999999999999998
Q ss_pred CCCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEE-ecCccc
Q 024255 199 GPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLA-YQVSFQ 263 (270)
Q Consensus 199 ~p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~-~~GAn~ 263 (270)
+.|||+||+|.+|+++++.|+++||+++++.+.+ .+|++++|+++++|+|+|++ ++||+.
T Consensus 260 -----v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~ 321 (581)
T PLN02967 260 -----VAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAED 321 (581)
T ss_pred -----EEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhh
Confidence 6999999999999999999999999999988765 48999999999999988864 567653
No 21
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.60 E-value=5.8e-15 Score=132.23 Aligned_cols=104 Identities=34% Similarity=0.509 Sum_probs=88.2
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|++++|++...+... .........+||+++|+|++|+|||.+
T Consensus 1 ~i~~iG~~~iD~~~~~~~~~-------------------------~~~~~~~~~~GG~~~N~a~~la~lg~~-------- 47 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGGRL-------------------------EQADSFRKFFGGAEANVAVGLARLGHR-------- 47 (294)
T ss_pred CeEEechhheeeecCCCCcc-------------------------chhhccccccCChHHHHHHHHHhcCCc--------
Confidence 58999999999987654210 011245677999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEEecC
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLAYQV 260 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~~~G 260 (270)
+.|+|.||+|.+|+.+++.|++.||++.++.... .+|+.++++++++|+|+++++++
T Consensus 48 ~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~ 105 (294)
T cd01166 48 VALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRA 105 (294)
T ss_pred eEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCC
Confidence 5999999999999999999999999999986555 58999999998889999999865
No 22
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.58 E-value=5.7e-15 Score=132.18 Aligned_cols=114 Identities=32% Similarity=0.453 Sum_probs=98.0
Q ss_pred CcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCc
Q 024255 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (270)
Q Consensus 123 ~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~ 202 (270)
.+|+++|.+++|++..++. + ++.... .......+||++.|+|++|++||.+
T Consensus 2 ~~v~~iG~~~iD~~~~~~~-~-------~~~~~~--------------~~~~~~~~GG~~~n~a~~l~~LG~~------- 52 (301)
T PF00294_consen 2 KKVLVIGEVNIDIIGYVDR-F-------KGDLVR--------------VSSVKRSPGGAGANVAIALARLGAD------- 52 (301)
T ss_dssp EEEEEESEEEEEEEEESSS-H-------TTSEEE--------------ESEEEEEEESHHHHHHHHHHHTTSE-------
T ss_pred CcEEEECccceEEEeecCC-c-------CCccee--------------cceEEEecCcHHHHHHHHHHhccCc-------
Confidence 4799999999999999876 2 122111 2356789999999999999999988
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEEecCcccccc
Q 024255 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLAYQVSFQRSI 266 (270)
Q Consensus 203 ~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~~~GAn~~~~ 266 (270)
|.+++.||+|.+|+.+++.|++.||+++++.+.. .+|++++++++++|+|+++.+.+++....
T Consensus 53 -v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~ 116 (301)
T PF00294_consen 53 -VALIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLT 116 (301)
T ss_dssp -EEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGG
T ss_pred -ceEEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccc
Confidence 6999999999999999999999999999998766 49999999999999999999998765543
No 23
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.58 E-value=1.2e-14 Score=130.63 Aligned_cols=105 Identities=31% Similarity=0.449 Sum_probs=90.8
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|++++|++...+. + .......+||+++|+|+++++||.+
T Consensus 1 ~ilviG~~~~D~~~~~~~-~---------------------------~~~~~~~~GG~~~n~a~~l~~lg~~-------- 44 (295)
T cd01167 1 KVVCFGEALIDFIPEGSG-A---------------------------PETFTKAPGGAPANVAVALARLGGK-------- 44 (295)
T ss_pred CEEEEcceeEEEecCCCC-C---------------------------CccccccCCCcHHHHHHHHHhcCCC--------
Confidence 689999999999976543 0 1235677999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEEecCcccc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLAYQVSFQR 264 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~~~GAn~~ 264 (270)
|.+++.+|+|.+|+.+++.|++.||++.++.+.. .+|++++++++++|+|++++++++...
T Consensus 45 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~ 106 (295)
T cd01167 45 AAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAAD 106 (295)
T ss_pred eEEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHh
Confidence 6999999999999999999999999999887544 599999999988999999999887643
No 24
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.58 E-value=2.1e-14 Score=128.53 Aligned_cols=112 Identities=28% Similarity=0.423 Sum_probs=91.9
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|.+++|++..++. +|. .|+... ...+...+||+++|+|++|++||.+
T Consensus 1 ~i~~iG~~~iD~~~~~~~-~p~-----~~~~~~--------------~~~~~~~~GG~~~NvA~~l~~lG~~-------- 52 (284)
T cd01945 1 RVLGVGLAVLDLIYLVAS-FPG-----GDGKIV--------------ATDYAVIGGGNAANAAVAVARLGGQ-------- 52 (284)
T ss_pred CEEEECcceeEEEEEecc-CCC-----CCCeEE--------------EeEEEEecCCHHHHHHHHHHHcCCC--------
Confidence 589999999999999876 542 233211 2356788999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCC-CCceEEEEEcCCCCeEEEEecCcccc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TTGTVIVLTTPDAQRAMLAYQVSFQR 264 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g-~TG~~~VLv~~dGeRTiv~~~GAn~~ 264 (270)
+.|++.||+|.+|+++++.|++.||++.++...++ +|+++++ +..+|+|+++.+.+....
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~ 113 (284)
T cd01945 53 ARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISITAIDTQ 113 (284)
T ss_pred eEEEEEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEecCCCCC
Confidence 59999999999999999999999999999987654 7888877 445788888888776544
No 25
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.55 E-value=2.3e-14 Score=140.74 Aligned_cols=123 Identities=22% Similarity=0.191 Sum_probs=92.7
Q ss_pred CCCCCCCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeec---cCCccEEecCChHHHHHHHHHHhC
Q 024255 117 SVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAM---DGCSYKAAAGGSLSNSLVALARLG 193 (270)
Q Consensus 117 ~~~~~~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i---~~~~~~~~~GGsAaNtAvaLARLG 193 (270)
...+++++|+++|++++|+++.++. +|+ ++.... ..+...+ ........+|| ++|+|++|+|||
T Consensus 67 ~~~~~~~~vl~lG~~~vD~i~~V~~-lP~-----~~~~~~------~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG 133 (470)
T PLN02341 67 SAAGKEIDVATLGNLCVDIVLPVPE-LPP-----PSREER------KAYMEELAASPPDKKSWEAGG-NCNFAIAAARLG 133 (470)
T ss_pred ccccccccEEEECCcceeEEEecCC-CCC-----CCHHHH------HHHHHhhcccccccceecCCh-HHHHHHHHHHcC
Confidence 3345667999999999999999987 652 232110 0000000 01123455677 799999999999
Q ss_pred CCCCCCCCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccC---------CCCceEEEEEcCCCCeEEEEecC
Q 024255 194 GKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD---------GTTGTVIVLTTPDAQRAMLAYQV 260 (270)
Q Consensus 194 ~~~~~~p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~---------g~TG~~~VLv~~dGeRTiv~~~G 260 (270)
.+ |.|+|+||+|.+|+++++.|++.||++.++...+ ..|+.|+++++++|+|+|+...+
T Consensus 134 ~~--------v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~ 201 (470)
T PLN02341 134 LR--------CSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRAD 201 (470)
T ss_pred CC--------eEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccc
Confidence 98 6999999999999999999999999999886543 36999999999999998876544
No 26
>PRK09954 putative kinase; Provisional
Probab=99.55 E-value=4.5e-14 Score=132.70 Aligned_cols=108 Identities=24% Similarity=0.286 Sum_probs=88.2
Q ss_pred CcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCc
Q 024255 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (270)
Q Consensus 123 ~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~ 202 (270)
..|+++|++++|+++.++..+|. .+. . .......+||+++|+|++|+|||.+
T Consensus 58 ~~v~viG~~~vD~~~~~~~~~p~-----~~~--~--------------~~~~~~~~GG~~~NvA~~larLG~~------- 109 (362)
T PRK09954 58 EYCVVVGAINMDIRGMADIRYPQ-----AAS--H--------------PGTIHCSAGGVGRNIAHNLALLGRD------- 109 (362)
T ss_pred ccEEEEEEEEEEEEEeeCCcCcC-----CCC--C--------------CceEEEecCcHHHHHHHHHHHcCCC-------
Confidence 48999999999999988732541 221 1 1235678999999999999999999
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCC-CCceEEEEEcCCCCeEEEEecC
Q 024255 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TTGTVIVLTTPDAQRAMLAYQV 260 (270)
Q Consensus 203 ~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g-~TG~~~VLv~~dGeRTiv~~~G 260 (270)
|.|+|.||+|.+|+++++.|++.||++.++.+.++ +|+.++++++++ +|+++.+.+
T Consensus 110 -v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~~~ 166 (362)
T PRK09954 110 -VHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQ-DETVLAIND 166 (362)
T ss_pred -eEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCC-CCEEEEEcC
Confidence 59999999999999999999999999999887665 799998888765 566666654
No 27
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.54 E-value=3.4e-14 Score=127.20 Aligned_cols=104 Identities=25% Similarity=0.314 Sum_probs=87.0
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
.|+++|++++|++..++. +| .+++... ......+||+++|+|+++++||.+
T Consensus 1 ~v~~~G~~~~D~~~~~~~-~~-----~~~~~~~---------------~~~~~~~GG~~~Nva~~l~~lG~~-------- 51 (288)
T cd01941 1 EIVVIGAANIDLRGKVSG-SL-----VPGTSNP---------------GHVKQSPGGVGRNIAENLARLGVS-------- 51 (288)
T ss_pred CeEEEEeEEEeeeecccC-cc-----ccCCCCC---------------eeEEEccCcHHHHHHHHHHHhCCC--------
Confidence 489999999999998877 44 1222110 124678999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEE
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAML 256 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv 256 (270)
+.+++.||+|.+|+.+++.|++.||++.++...+.+|++++++++++|+|++.
T Consensus 52 ~~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 104 (288)
T cd01941 52 VALLSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVA 104 (288)
T ss_pred cEEEEEEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEE
Confidence 59999999999999999999999999998874446899999999989999873
No 28
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.54 E-value=5.3e-14 Score=126.71 Aligned_cols=108 Identities=24% Similarity=0.331 Sum_probs=91.7
Q ss_pred cCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcceEEEE
Q 024255 129 GQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTG 208 (270)
Q Consensus 129 G~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~V~fVG 208 (270)
|.+++|++..++. +| ..+.... .......+||++.|+|++|++||.+ +.+++
T Consensus 1 G~~~~D~~~~~~~-~p-----~~~~~~~--------------~~~~~~~~GG~~~Nva~~l~~lg~~--------~~~~~ 52 (293)
T TIGR02152 1 GSINMDLVLRTDR-LP-----KPGETVH--------------GHSFQIGPGGKGANQAVAAARLGAE--------VSMIG 52 (293)
T ss_pred CCceEeEEEEeCC-CC-----CCCCcEe--------------cCCceecCCCcHHHHHHHHHHCCCC--------EEEEE
Confidence 7899999999986 54 2333222 2356789999999999999999998 59999
Q ss_pred EeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEEecCcccc
Q 024255 209 SVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLAYQVSFQR 264 (270)
Q Consensus 209 ~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~~~GAn~~ 264 (270)
.||+|.+|+++++.|++.||++.++...+ .+|++++++++++|+|+++.++|++..
T Consensus 53 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 109 (293)
T TIGR02152 53 KVGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAE 109 (293)
T ss_pred EecCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCc
Confidence 99999999999999999999999987665 489999999998899999999887543
No 29
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.53 E-value=3.9e-14 Score=126.46 Aligned_cols=99 Identities=25% Similarity=0.275 Sum_probs=84.8
Q ss_pred CcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCc
Q 024255 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (270)
Q Consensus 123 ~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~ 202 (270)
++|++||.+++|++.++. +..+||+++|+|++|+|||.+
T Consensus 1 ~~v~~iG~~~~D~~~~~~----------------------------------~~~~GG~~~NvA~~l~~lG~~------- 39 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG----------------------------------KAFSGGNAVNVAVYCTRYGIQ------- 39 (260)
T ss_pred CeEEEeccceeeecccCC----------------------------------ccccCccHHHHHHHHHHcCCc-------
Confidence 479999999999984321 146999999999999999998
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEec-Ccccc
Q 024255 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQ-VSFQR 264 (270)
Q Consensus 203 ~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~-GAn~~ 264 (270)
|.|+|.||+|.+|+++++.|++.||+++++.+.+++|+.+++.+. +++|++..+. +++..
T Consensus 40 -~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~-~~~r~~~~~~~~~~~~ 100 (260)
T PRK09813 40 -PGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELH-DNDRVFGDYTEGVMAD 100 (260)
T ss_pred -ceEEEEecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEe-CCcEEeeccCCCcccc
Confidence 599999999999999999999999999999876678999998886 6899998775 55443
No 30
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.51 E-value=1.3e-13 Score=125.30 Aligned_cols=97 Identities=31% Similarity=0.442 Sum_probs=83.3
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|++++|++... + ..+...+||+++|+|++|++||.+
T Consensus 4 ~il~iG~~~iD~~~~~------------~-------------------~~~~~~~GG~~~N~a~~l~~LG~~-------- 44 (304)
T PRK09434 4 KVWVLGDAVVDLIPEG------------E-------------------NRYLKCPGGAPANVAVGIARLGGE-------- 44 (304)
T ss_pred cEEEecchheeeecCC------------C-------------------CceeeCCCChHHHHHHHHHHcCCC--------
Confidence 8999999999998221 0 123467999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEEec
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLAYQ 259 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~~~ 259 (270)
+.+++.||+|.+|+++++.|++.||++.++...+ .+|+.++++++++|+|+|.++.
T Consensus 45 ~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~ 101 (304)
T PRK09434 45 SGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMV 101 (304)
T ss_pred ceEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEec
Confidence 5999999999999999999999999999887655 4899999999888999976553
No 31
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.50 E-value=9.7e-14 Score=123.25 Aligned_cols=96 Identities=27% Similarity=0.321 Sum_probs=82.3
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|++++|++... ....+||+++|+|++|+|||.+
T Consensus 1 ~v~~iG~~~~D~~~~~----------------------------------~~~~~GG~~~Nva~~la~lG~~-------- 38 (264)
T cd01940 1 RLAAIGDNVVDKYLHL----------------------------------GKMYPGGNALNVAVYAKRLGHE-------- 38 (264)
T ss_pred CeEEEcceEEEEeccC----------------------------------ceecCCCcHHHHHHHHHHcCCC--------
Confidence 5899999999997321 2357999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEec-Ccc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQ-VSF 262 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~-GAn 262 (270)
+.|++.||+|.+|+++++.|++.||+++++...+++|+.+++++ ++|+|+++.+. |+.
T Consensus 39 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~~-~~g~r~~~~~~~~~~ 97 (264)
T cd01940 39 SAYIGAVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVEL-VDGDRIFGLSNKGGV 97 (264)
T ss_pred eeEEecccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEEe-cCCceEEEeecCCcH
Confidence 59999999999999999999999999999887667899988664 67899988774 543
No 32
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.45 E-value=4.2e-13 Score=121.27 Aligned_cols=105 Identities=22% Similarity=0.180 Sum_probs=87.6
Q ss_pred EEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcceEE
Q 024255 127 GLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAM 206 (270)
Q Consensus 127 vIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~V~f 206 (270)
|.=++.+|+++.++. +| +|+... ...+...+||+++|+|++|+|||.+ |.|
T Consensus 4 ~~~~~~~D~~~~~~~-~~------~g~~~~--------------~~~~~~~~GG~~~NvA~~la~lG~~--------v~~ 54 (304)
T TIGR03828 4 VTLNPAIDLTIELDG-LT------LGEVNR--------------VESTRIDAGGKGINVSRVLKNLGVD--------VVA 54 (304)
T ss_pred EEcchHHeEEEEccc-cc------cCceee--------------cccccccCCccHHHHHHHHHHcCCC--------eEE
Confidence 344789999999987 54 343222 2356788999999999999999998 699
Q ss_pred EEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcc
Q 024255 207 TGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSF 262 (270)
Q Consensus 207 VG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn 262 (270)
+++||+| +|+.+++.|++.||+++++... ..|++++++++++|+|+++.++|+.
T Consensus 55 is~vG~D-~g~~~~~~L~~~gId~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~~ 108 (304)
T TIGR03828 55 LGFLGGF-TGDFIEALLREEGIKTDFVRVP-GETRINVKIKEPSGTETKLNGPGPE 108 (304)
T ss_pred EEEecCc-hhHHHHHHHHHCCCcceEEECC-CCCeeeEEEEeCCCCEEEEECCCCC
Confidence 9999999 6999999999999999988765 4688899999888999999888764
No 33
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.44 E-value=1.1e-12 Score=118.44 Aligned_cols=111 Identities=23% Similarity=0.213 Sum_probs=83.2
Q ss_pred cEEEEcCcceeeEeecCh-hHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCc
Q 024255 124 DVLGLGQAMVDFSGMVDD-DFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~-~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~ 202 (270)
+|++||++++|+++.++. .++. +...... ........+|| ++|+|++|+|||.+
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~-----~~~~~~~------------~~~~~~~~~GG-~~NvA~~la~LG~~------- 55 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISP-----EAPVPVV------------KVEREEIRLGG-AANVANNLASLGAK------- 55 (304)
T ss_pred CEEEEcceeEEeeEeeccccccC-----CCCcceE------------EeeeEEecCcH-HHHHHHHHHHhCCC-------
Confidence 589999999999988642 1321 1110000 01235667999 68999999999998
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCc
Q 024255 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVS 261 (270)
Q Consensus 203 ~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GA 261 (270)
+.|++.||+|.+|+++++.|++.||++.++.....+|+++++++++ ++|.+..+.+.
T Consensus 56 -~~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~ 112 (304)
T cd01172 56 -VTLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIAR-NQQLLRVDRED 112 (304)
T ss_pred -eEEEEEEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecC-CcEEEEEecCC
Confidence 5999999999999999999999999999854333479999888875 57767666543
No 34
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.43 E-value=7.2e-14 Score=130.56 Aligned_cols=100 Identities=13% Similarity=0.062 Sum_probs=84.4
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHh-CC--CCCCCC
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARL-GG--KPIGGP 200 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARL-G~--~~~~~p 200 (270)
+|+++|.+++|++...+. ..+...+||+++|+|+++++| |. +
T Consensus 1 ~~~~~G~~~~d~i~~~~~------------------------------~~~~~~~GG~~~N~A~~~~~l~g~~~~----- 45 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS------------------------------EPVTNVLGGAGTYAILGARLFLPPPLS----- 45 (328)
T ss_pred CccccCcEEeeccccCCC------------------------------CccccccCCchhhHhhceeeecCCccc-----
Confidence 589999999999865432 134567999999999999999 44 4
Q ss_pred Ccce--EEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEEecCccc
Q 024255 201 ALNV--AMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLAYQVSFQ 263 (270)
Q Consensus 201 ~~~V--~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~~~GAn~ 263 (270)
+ .+++++|+| +|+++++.|++.||++.+ .+.. .+|++++++++++|+|+++++.|++.
T Consensus 46 ---~~~~~~~~vG~D-~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~ 106 (328)
T cd01943 46 ---RSISWIVDKGSD-FPKSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKR 106 (328)
T ss_pred ---cceeeEEecCCC-CCHHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCcccc
Confidence 4 789999999 999999999999999998 5544 48999999998899999999988763
No 35
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.40 E-value=2e-12 Score=116.66 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=88.0
Q ss_pred EEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcceE
Q 024255 126 LGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVA 205 (270)
Q Consensus 126 lvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~V~ 205 (270)
.+++++++|+++.++. ++ ++.... .......+||+++|+|++|+|||.+ |.
T Consensus 4 ~~~~~~~~D~~~~~~~-~~------~~~~~~--------------~~~~~~~~GG~~~Nva~~la~lG~~--------v~ 54 (289)
T cd01164 4 TVTLNPAIDLTIELDQ-LQ------PGEVNR--------------VSSTRKDAGGKGINVARVLKDLGVE--------VT 54 (289)
T ss_pred EEecChHHeEEEEcCc-cc------CCceee--------------cccccccCCcchhHHHHHHHHcCCC--------eE
Confidence 5789999999999997 54 232222 2346688999999999999999998 69
Q ss_pred EEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcc
Q 024255 206 MTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSF 262 (270)
Q Consensus 206 fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn 262 (270)
|++.||+| +|+++++.|++.||++.++... ..|+.++++++.+|+++++.+.++.
T Consensus 55 ~is~vG~D-~g~~i~~~l~~~gi~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~ 109 (289)
T cd01164 55 ALGFLGGF-TGDFFEALLKEEGIPDDFVEVA-GETRINVKIKEEDGTETEINEPGPE 109 (289)
T ss_pred EEEEccCc-hhHHHHHHHHHcCCCceEEECC-CCCEEEEEEEeCCCCEEEEeCCCCC
Confidence 99999998 8999999999999999988754 5688999998877888888777653
No 36
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.39 E-value=2.2e-12 Score=117.55 Aligned_cols=104 Identities=21% Similarity=0.155 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCcceeeEee--cChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCC
Q 024255 120 PERWDVLGLGQAMVDFSGM--VDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPI 197 (270)
Q Consensus 120 ~~~~~VlvIG~alVDii~~--vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~ 197 (270)
+++.+|+++|.+++|++.. ++. +.+. .++.... .......+|| ++|+|++|+|||.+
T Consensus 5 ~~~~~il~iG~~~iD~~~~~~~~~-~~~~---~~~~~~~--------------~~~~~~~~GG-a~NvA~~l~~lg~~-- 63 (315)
T TIGR02198 5 FKGAKVLVVGDVMLDRYWYGKVSR-ISPE---APVPVVK--------------VEREEDRLGG-AANVARNIASLGAR-- 63 (315)
T ss_pred hCCCcEEEECceeEeeeeeecccc-cCCC---CCCceEE--------------EEEEEecCcH-HHHHHHHHHhcCCc--
Confidence 3567999999999999987 333 2110 0111000 1234667888 79999999999998
Q ss_pred CCCCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCC
Q 024255 198 GGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPD 250 (270)
Q Consensus 198 ~~p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~d 250 (270)
|.|+|.||+|.+|+++++.|++.||++.++.+.+ .+|+.++++++++
T Consensus 64 ------v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~ 111 (315)
T TIGR02198 64 ------VFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARN 111 (315)
T ss_pred ------eEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCC
Confidence 5999999999999999999999999999887665 4899999998863
No 37
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.37 E-value=3.3e-12 Score=113.05 Aligned_cols=97 Identities=19% Similarity=0.158 Sum_probs=79.3
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
+|+++|++++|++..... ....+||+++|+|++|+|||.+
T Consensus 1 ~il~iG~~~iD~~~~~~~--------------------------------~~~~~GG~~~Nva~~la~lG~~-------- 40 (254)
T cd01937 1 KIVIIGHVTIDEIVTNGS--------------------------------GVVKPGGPATYASLTLSRLGLT-------- 40 (254)
T ss_pred CeEEEcceeEEEEecCCc--------------------------------eEEecCchhhhHHHHHHHhCCC--------
Confidence 589999999999965321 3467999999999999999999
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcccc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQR 264 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn~~ 264 (270)
+.++|.||+|..|+ ++.|++.||++..+ ....|+.+++.++.+|+|+++++.+++..
T Consensus 41 ~~~i~~vG~D~~g~--~~~l~~~gv~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 97 (254)
T cd01937 41 VKLVTKVGRDYPDK--WSDLFDNGIEVISL--LSTETTTFELNYTNEGRTRTLLAKCAAIP 97 (254)
T ss_pred eEEEEeeCCCchHH--HHHHHHCCcEEEEe--cCCCeEEEEEEecCCCCeeeeeccccCCc
Confidence 59999999999999 68899999996533 23356667677777789999999887643
No 38
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.35 E-value=7.6e-12 Score=114.57 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=88.3
Q ss_pred EEEEc-CcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 125 VLGLG-QAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 125 VlvIG-~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
|+++- ++.+|+++.+++ ++ +|+...+ ......+||+++|+|++|+|||.+
T Consensus 4 i~~~~~~p~~d~~~~~~~-~~------~~~~~~~--------------~~~~~~~GG~~~NvA~~l~~lG~~-------- 54 (309)
T PRK10294 4 IYTLTLAPSLDSATITPQ-IY------PEGKLRC--------------SAPVFEPGGGGINVARAIAHLGGS-------- 54 (309)
T ss_pred EEEEecChHHeEEEEeCc-ee------eCCeEEe--------------ccceecCCccHHHHHHHHHHcCCC--------
Confidence 55554 899999999986 43 5554444 245677999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSF 262 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn 262 (270)
+.+++.+|+ .+|+++++.|++.||++.++...+..+..++++++++|+|+++.++++.
T Consensus 55 ~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~ 112 (309)
T PRK10294 55 ATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAA 112 (309)
T ss_pred eEEEEEecC-ccHHHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCCC
Confidence 599999996 8999999999999999999876555555667777888999999888865
No 39
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.34 E-value=7.5e-12 Score=121.59 Aligned_cols=106 Identities=20% Similarity=0.172 Sum_probs=81.5
Q ss_pred CCCcEEEEcCcceeeEeecChh-HHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCC
Q 024255 121 ERWDVLGLGQAMVDFSGMVDDD-FLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGG 199 (270)
Q Consensus 121 ~~~~VlvIG~alVDii~~vd~~-~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~ 199 (270)
.+.+|+|+|++++|+++.++.. +..+ .+... +........+|| ++|+|++|++||.+
T Consensus 9 ~~~~ilviG~~~lD~~~~~~~~~~~~~---~~~~~--------------~~~~~~~~~~GG-a~NvA~~la~LG~~---- 66 (473)
T PRK11316 9 ERAGVLVVGDVMLDRYWYGPTSRISPE---APVPV--------------VKVNQIEERPGG-AANVAMNIASLGAQ---- 66 (473)
T ss_pred CCCcEEEECccEEeeeeecccceeCCC---CCCCE--------------EEeeeEEecCcH-HHHHHHHHHHcCCc----
Confidence 4558999999999999886321 1100 01111 112346677999 69999999999999
Q ss_pred CCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCC
Q 024255 200 PALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQ 252 (270)
Q Consensus 200 p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGe 252 (270)
|.|+|.||+|.+|+++++.|++.||+++++...+.+|+.++++++.+++
T Consensus 67 ----v~~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~ 115 (473)
T PRK11316 67 ----ARLVGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQ 115 (473)
T ss_pred ----EEEEEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCce
Confidence 6999999999999999999999999999887644589999999875443
No 40
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.32 E-value=1.6e-11 Score=112.61 Aligned_cols=106 Identities=23% Similarity=0.266 Sum_probs=87.3
Q ss_pred EEEEc-CcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 125 VLGLG-QAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 125 VlvIG-~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
|+.+. ++++|++..+++ |+ +|+...+ ..+...+||+++|+|++|+|||.+
T Consensus 5 ~~~~~~~p~~D~~~~~~~-~~------~~~~~~~--------------~~~~~~~GG~~~Nva~~la~lG~~-------- 55 (312)
T PRK09513 5 VATITLNPAYDLVGFCPE-IE------RGEVNLV--------------KTTGLHAAGKGINVAKVLKDLGID-------- 55 (312)
T ss_pred EEEEecChHHeEEEEcCc-ee------cCCeeee--------------cceeecCCchHHHHHHHHHHcCCC--------
Confidence 65444 999999999987 64 2432222 356789999999999999999998
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCc
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVS 261 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GA 261 (270)
+.|+|.||+|.+|++ ++.|+++||++.+++ .++.|++++++++++|+|+++.+++.
T Consensus 56 ~~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~ 111 (312)
T PRK09513 56 VTVGGFLGKDNQDGF-QQLFSELGIANRFQV-VQGRTRINVKLTEKDGEVTDFNFSGF 111 (312)
T ss_pred eEEEEEecCccHHHH-HHHHHHcCCCccEEE-CCCCCEEEEEEEeCCCcEEEEeCCCC
Confidence 599999999999997 689999999988764 44579999999988899998888774
No 41
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.32 E-value=1.5e-11 Score=112.63 Aligned_cols=104 Identities=23% Similarity=0.255 Sum_probs=84.8
Q ss_pred EEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcceE
Q 024255 126 LGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVA 205 (270)
Q Consensus 126 lvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~V~ 205 (270)
.+.-++++|+++.++. ++ .++...+ ......+||+++|+|++|+|||.+ +.
T Consensus 4 ~~t~np~~D~~~~~~~-~~------~~~~~~~--------------~~~~~~~GG~~~NvA~~la~LG~~--------~~ 54 (309)
T PRK13508 4 TVTLNPSIDISYPLDE-LK------LDTVNRV--------------VDVSKTAGGKGLNVTRVLSEFGEN--------VL 54 (309)
T ss_pred EEecChHHeEEEEeCC-ee------eCCeEEe--------------cceeecCCchHHHHHHHHHHcCCC--------eE
Confidence 3557999999999987 54 3332222 245678999999999999999998 59
Q ss_pred EEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcc
Q 024255 206 MTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSF 262 (270)
Q Consensus 206 fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn 262 (270)
++|.||+ .+|+++++.|++ ||++.++.. ++.|+.++++++ +|+|+++.++|+.
T Consensus 55 ~~~~vGd-~~G~~i~~~l~~-gI~~~~~~~-~~~t~~~~~~~~-~g~~~~~~~~~~~ 107 (309)
T PRK13508 55 ATGLIGG-ELGQFIAEHLDD-QIKHAFYKI-KGETRNCIAILH-EGQQTEILEKGPE 107 (309)
T ss_pred EEEEecC-hhHHHHHHHHHc-CCCceEEEC-CCCCeeeEEEEe-CCCEEEEECCCCC
Confidence 9999995 789999999999 999987654 457888888886 7899999998874
No 42
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.31 E-value=1.3e-11 Score=113.03 Aligned_cols=102 Identities=25% Similarity=0.262 Sum_probs=83.5
Q ss_pred cCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcceEEEE
Q 024255 129 GQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTG 208 (270)
Q Consensus 129 G~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~V~fVG 208 (270)
=++.+|+++.+++ ++ .++...+ ..+...+||+++|+|++|+|||.+ +.+++
T Consensus 6 ~~p~~d~~~~~~~-~~------~~~~~~~--------------~~~~~~~GG~~~NvA~~la~LG~~--------v~~i~ 56 (309)
T TIGR01231 6 LNPSVDISYPLTA-LK------LDTVNRV--------------QEVSKTAGGKGLNVTRVLAQVGDP--------VLASG 56 (309)
T ss_pred cchHHeEEEEcCC-ee------eCceEee--------------ceeeecCCccHHHHHHHHHHcCCC--------eEEEE
Confidence 3788999888877 54 3333332 346788999999999999999999 59999
Q ss_pred EeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcc
Q 024255 209 SVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSF 262 (270)
Q Consensus 209 ~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn 262 (270)
.+|+ .+|+++++.|++.||++.++.. ...|+.+++++. +|+|++++++|++
T Consensus 57 ~vG~-~~G~~i~~~l~~~GV~~~~~~~-~~~t~~~~~~~~-~g~~~~~~~~~~~ 107 (309)
T TIGR01231 57 FLGG-KLGEFIEKELDHSDIKHAFYKI-SGETRNCIAILH-EGQQTEILEQGPE 107 (309)
T ss_pred EecC-hhHHHHHHHHHHcCCceeEEEC-CCCCEEeEEEEe-CCCEEEEeCCCCC
Confidence 9996 5999999999999999998765 346878888775 7899999999875
No 43
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.29 E-value=1.9e-11 Score=111.09 Aligned_cols=102 Identities=25% Similarity=0.286 Sum_probs=83.8
Q ss_pred CcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcceEEEEE
Q 024255 130 QAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGS 209 (270)
Q Consensus 130 ~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~V~fVG~ 209 (270)
++.+|+++.++. ++ +|....+ ......+||+++|+|++++|||.+ +.|++.
T Consensus 7 ~~~~D~~~~~~~-~~------~~~~~~~--------------~~~~~~~GG~~~N~a~~l~~lg~~--------~~~i~~ 57 (303)
T TIGR03168 7 NPAIDLTIEVDG-LT------PGEVNRV--------------AAVRKDAGGKGINVARVLARLGAE--------VVATGF 57 (303)
T ss_pred chHHeEEEEcCc-cc------cCceeec--------------CcccccCCcchhhHHHHHHHcCCC--------eEEEEE
Confidence 677999998887 32 3432222 345688999999999999999998 599999
Q ss_pred eCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcc
Q 024255 210 VGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSF 262 (270)
Q Consensus 210 VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn 262 (270)
||+| +|+.+++.|++.||++.++... ..|+.++++++++|+|+++.++++.
T Consensus 58 vG~D-~g~~i~~~l~~~gI~~~~i~~~-~~t~~~~~~~~~~g~~~~~~~~~~~ 108 (303)
T TIGR03168 58 LGGF-TGEFIEALLAEEGIKNDFVEVK-GETRINVKIKESSGEETELNEPGPE 108 (303)
T ss_pred eCCc-hhHHHHHHHHHcCCCceEEECC-CCCEEeEEEEeCCCCEEEEeCcCCC
Confidence 9999 7999999999999999998764 5688888888888899888877653
No 44
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.11 E-value=6e-10 Score=105.58 Aligned_cols=95 Identities=19% Similarity=0.096 Sum_probs=76.1
Q ss_pred CCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCC
Q 024255 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPA 201 (270)
Q Consensus 122 ~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~ 201 (270)
..+|++||++++|++..+.. .....+||+++|+|++|+|||.+
T Consensus 11 ~~~vlvvG~~~~D~i~~~g~-------------------------------~~~~~~GG~a~N~A~alarLG~~------ 53 (335)
T PLN02630 11 QRRVLIVGNYCHDVLIQNGS-------------------------------VTAESLGGAASFISNVLDALSVE------ 53 (335)
T ss_pred CCCEEEEeeeeeeEEEeCCc-------------------------------EEEEecCcHHHHHHHHHHHcCCc------
Confidence 45899999999999976521 02467999999999999999999
Q ss_pred cceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcC-----CCCeEEEEecCccccc
Q 024255 202 LNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTP-----DAQRAMLAYQVSFQRS 265 (270)
Q Consensus 202 ~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~-----dGeRTiv~~~GAn~~~ 265 (270)
+.|+++||+|.. .+|+...+.....+|+.+++++++ +++|+|+.++|++..+
T Consensus 54 --~~lis~VG~D~~----------~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l 110 (335)
T PLN02630 54 --CELVSKVGPDFL----------YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPI 110 (335)
T ss_pred --eEEEEEecCCcc----------ccccccceecCCCCceEEEEEEcCCcccCCCCeEEEEeccccCCC
Confidence 599999999953 377765554434589999998876 5799999999998654
No 45
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=98.97 E-value=1e-09 Score=98.70 Aligned_cols=76 Identities=24% Similarity=0.232 Sum_probs=62.6
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcc
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~ 203 (270)
.|+|+|.+++|++.... + .....+||+++|+|++++||| +
T Consensus 1 ~v~~~G~~~~D~~~~~~-----------~--------------------~~~~~~GG~a~N~a~~la~lg-~-------- 40 (277)
T cd01946 1 SLLVVGSVAFDAIETPF-----------G--------------------KVDKALGGSATYFSLSASYFT-D-------- 40 (277)
T ss_pred CeEEEEEeeeeeecCCC-----------c--------------------eeeeccCchHHHHHHHHHHhc-c--------
Confidence 38999999999992111 1 123568999999999999997 5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHcCCCCccccccC-CCC
Q 024255 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTT 240 (270)
Q Consensus 204 V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~-g~T 240 (270)
+.|++.||+| +|+.+++.|++.||+++++...+ ..|
T Consensus 41 v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t 77 (277)
T cd01946 41 VRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKT 77 (277)
T ss_pred ceeEEeccCc-ChHHHHHHHHhccCcceeEEEecCCCe
Confidence 5999999999 89999999999999999987754 345
No 46
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.8e-08 Score=92.93 Aligned_cols=113 Identities=21% Similarity=0.257 Sum_probs=91.9
Q ss_pred CCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCC
Q 024255 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPA 201 (270)
Q Consensus 122 ~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~ 201 (270)
...|+|+|...+|++..++. +| .++.... ...-.++-||.|+|+..++.+||+++
T Consensus 4 ~k~VLcVG~~~lD~iTivd~-~~-----fe~~~~r--------------~~~g~wqRgG~asNvcTvlrlLG~~c----- 58 (308)
T KOG2947|consen 4 PKQVLCVGCTVLDVITIVDK-YP-----FEDSEIR--------------CLSGRWQRGGNASNVCTVLRLLGAPC----- 58 (308)
T ss_pred cceEEEeccEEEEEEEeccC-CC-----CCcccee--------------hhhhhhhcCCCcchHHHHHHHhCCch-----
Confidence 36899999999999999987 44 1232111 12456789999999999999999995
Q ss_pred cceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEc-CCCCeEEEEecCcc
Q 024255 202 LNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTT-PDAQRAMLAYQVSF 262 (270)
Q Consensus 202 ~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~-~dGeRTiv~~~GAn 262 (270)
.|+|.+.....-+++++.|++.|||+++....+.....+.|+++ ..|.|||+++--++
T Consensus 59 ---ef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~ 117 (308)
T KOG2947|consen 59 ---EFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSL 117 (308)
T ss_pred ---heeeecccchhHHHHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCC
Confidence 99999999999999999999999999999988876666666665 46899999886544
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=1.5e-06 Score=85.11 Aligned_cols=102 Identities=20% Similarity=0.147 Sum_probs=75.5
Q ss_pred CCCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCC
Q 024255 121 ERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGP 200 (270)
Q Consensus 121 ~~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p 200 (270)
.+.+|+++|..++|.++...-+.+ ++| .+.+.-.+ ......+|| |+|+|.+++.||++
T Consensus 9 ~~~kVLVvGDvmLDrY~~G~~~RI-------------SPE-APVPVv~v--~~e~~rlGG-AaNVa~NiasLGa~----- 66 (467)
T COG2870 9 KQAKVLVVGDVMLDRYWYGKVSRI-------------SPE-APVPVVKV--EKEEERLGG-AANVAKNIASLGAN----- 66 (467)
T ss_pred cCCcEEEEcceeeeeecccccccc-------------CCC-CCCceEEe--ccccccccc-HHHHHHHHHHcCCC-----
Confidence 456899999999999988654222 121 22222222 345677888 99999999999999
Q ss_pred CcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEE
Q 024255 201 ALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLT 247 (270)
Q Consensus 201 ~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv 247 (270)
+.++|-+|+|..|+.+++.|...+|+..+++....+|-.=.=++
T Consensus 67 ---a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~ 110 (467)
T COG2870 67 ---AYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVL 110 (467)
T ss_pred ---EEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeee
Confidence 59999999999999999999999999776655445664433333
No 48
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=98.06 E-value=9.1e-06 Score=68.34 Aligned_cols=53 Identities=36% Similarity=0.336 Sum_probs=41.8
Q ss_pred cEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCC
Q 024255 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKP 196 (270)
Q Consensus 124 ~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~ 196 (270)
+|+++|++++|++..++. +| .++..... ......+||++.|+|++|++||.++
T Consensus 1 ~v~~iG~~~~D~~~~~~~-~~-----~~~~~~~~--------------~~~~~~~GG~~~n~a~~l~~LG~~~ 53 (196)
T cd00287 1 RVLVVGSLLVDVILRVDA-LP-----LPGGLVRP--------------GDTEERAGGGAANVAVALARLGVSV 53 (196)
T ss_pred CEEEEccceEEEEEEecc-CC-----CCCCeEEe--------------ceeeecCCCcHHHHHHHHHHCCCcE
Confidence 489999999999999986 44 23432222 3467889999999999999999983
No 49
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=98.02 E-value=2.1e-05 Score=74.81 Aligned_cols=102 Identities=22% Similarity=0.283 Sum_probs=82.3
Q ss_pred CcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcceEEEEE
Q 024255 130 QAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGS 209 (270)
Q Consensus 130 ~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~V~fVG~ 209 (270)
++.+|++..++. + +.|+...+ ......+||++.|+|+.|++||.+ +.-+|.
T Consensus 8 NPaiD~~~~l~~-l------~~g~vNr~--------------~~~~~~aGGKGINVa~vL~~lG~~--------~~a~Gf 58 (310)
T COG1105 8 NPALDYTVFLDE-L------ELGEVNRV--------------RAVTKTAGGKGINVARVLKDLGIP--------VTALGF 58 (310)
T ss_pred ChhHhheeeccc-c------cccceeee--------------ccceecCCCCceeHHHHHHHcCCC--------ceEEEe
Confidence 778899988865 2 34442222 346788999999999999999999 488899
Q ss_pred eCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcC-CCCeEEEEecCcc
Q 024255 210 VGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTP-DAQRAMLAYQVSF 262 (270)
Q Consensus 210 VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~-dGeRTiv~~~GAn 262 (270)
+|.+ .|+++.+.|++.||...++. .++.|-.++.+.+. +|+-|-+..+|..
T Consensus 59 lGg~-tg~~~~~~l~~~gi~~~fv~-v~g~TRinvki~~~~~~~~Tein~~Gp~ 110 (310)
T COG1105 59 LGGF-TGEFFVALLKDEGIPDAFVE-VKGDTRINVKILDEEDGEETEINFPGPE 110 (310)
T ss_pred cCCc-cHHHHHHHHHhcCCCceEEE-ccCCCeeeEEEEecCCCcEEEecCCCCC
Confidence 9986 79999999999999999885 56789999999986 5667888888754
No 50
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=96.64 E-value=0.0029 Score=63.43 Aligned_cols=69 Identities=33% Similarity=0.538 Sum_probs=54.3
Q ss_pred EEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCCcceE
Q 024255 126 LGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVA 205 (270)
Q Consensus 126 lvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~~~V~ 205 (270)
+++|...+|+.+.++++.- ..|+.. ........||.+-|.|.+++|||++ +.
T Consensus 344 v~vGa~i~D~~~k~d~d~K-----~dG~sy---------------~~~~~Qa~GGVarN~A~a~~~lg~d--------~~ 395 (614)
T KOG3009|consen 344 VSVGATIVDFEAKTDEDVK-----DDGGSY---------------NGQVVQAMGGVARNHADALARLGCD--------SV 395 (614)
T ss_pred eeecceEEEeEEeeccccc-----ccCCcc---------------cchhhhhccchhhhHHHHHHHhcCC--------ee
Confidence 8999999999999987321 123211 2245567999999999999999999 59
Q ss_pred EEEEeCCCchHHHHHHH
Q 024255 206 MTGSVGSDPLGGFYRAK 222 (270)
Q Consensus 206 fVG~VGdD~~Ge~I~e~ 222 (270)
||++||+|..|++.+..
T Consensus 396 liSavG~d~n~~~~~~~ 412 (614)
T KOG3009|consen 396 LISAVGDDNNGHFFRQN 412 (614)
T ss_pred EEEEeccCCcchhhhhh
Confidence 99999999988877653
No 51
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=90.04 E-value=0.09 Score=42.55 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=0.0
Q ss_pred CccccCCCCCCcccccccCC
Q 024255 97 DESEADDDGDEYDEEISGSA 116 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ 116 (270)
++++++||||+|+++.|+++
T Consensus 26 dEEedDddddee~de~p~p~ 45 (101)
T PF09026_consen 26 DEEEDDDDDDEEEDEVPVPE 45 (101)
T ss_dssp --------------------
T ss_pred cccccccccccccccccchh
Confidence 33333444455555555544
No 52
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.78 E-value=1.2 Score=48.47 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=7.1
Q ss_pred CCCCcccccccCcccc
Q 024255 86 RDNYEEDDEAGDESEA 101 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~~ 101 (270)
|+|++|.||.++++++
T Consensus 1401 r~~~dd~DeeeD~e~E 1416 (1516)
T KOG1832|consen 1401 RPTDDDSDEEEDDETE 1416 (1516)
T ss_pred CCCccccCccccchhh
Confidence 3544444444444333
No 53
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=72.10 E-value=6 Score=37.60 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=12.6
Q ss_pred cCCccchhhhhhhhhcccCcce
Q 024255 25 HHPHRTKLQALVFRKFSLGKER 46 (270)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~ 46 (270)
|--.-||--.+--|++..|...
T Consensus 217 ~et~eTkdLSmStR~hkyGRQ~ 238 (314)
T PF06524_consen 217 YETQETKDLSMSTRSHKYGRQG 238 (314)
T ss_pred Ccccccccceeeeecchhcccc
Confidence 3344566555666766666543
No 54
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=71.09 E-value=1.3 Score=35.91 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=0.0
Q ss_pred CCCCcccccccCccc--cCCCCCCccccc
Q 024255 86 RDNYEEDDEAGDESE--ADDDGDEYDEEI 112 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 112 (270)
+|.+.+.||.++.++ ++|||||||++.
T Consensus 10 ~dse~dsdEdeeeededEEedDddddee~ 38 (101)
T PF09026_consen 10 EDSESDSDEDEEEEDEDEEEDDDDDDEEE 38 (101)
T ss_dssp -----------------------------
T ss_pred cccccccccchhhhhhccccccccccccc
Confidence 555555444444443 333334444443
No 55
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=70.63 E-value=1.4 Score=34.62 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=0.0
Q ss_pred ccccccCCC
Q 024255 109 DEEISGSAS 117 (270)
Q Consensus 109 ~~~~~~~~~ 117 (270)
|||++.+.+
T Consensus 48 eeee~m~rK 56 (81)
T PF14812_consen 48 EEEEPMPRK 56 (81)
T ss_dssp ---------
T ss_pred hhccccccc
Confidence 444444444
No 56
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=46.97 E-value=8.8 Score=42.22 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=6.7
Q ss_pred CCCCC-CCCCCccccc
Q 024255 80 GGGDL-GRDNYEEDDE 94 (270)
Q Consensus 80 ~~~~~-~~~~~~~~~~ 94 (270)
|---+ --||+||+|+
T Consensus 1398 GR~r~~~dd~DeeeD~ 1413 (1516)
T KOG1832|consen 1398 GRRRPTDDDSDEEEDD 1413 (1516)
T ss_pred cccCCCccccCccccc
Confidence 44444 4455444443
No 57
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=41.67 E-value=14 Score=37.31 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=7.0
Q ss_pred EEeCCC-chHHHHHHHH
Q 024255 208 GSVGSD-PLGGFYRAKL 223 (270)
Q Consensus 208 G~VGdD-~~Ge~I~e~L 223 (270)
|.+-.| ++-..++.-|
T Consensus 198 GTLDEDRPLE~AY~Scl 214 (458)
T PF10446_consen 198 GTLDEDRPLEAAYISCL 214 (458)
T ss_pred CCcCCcchHHHHHHHHH
Confidence 355555 2334444444
No 58
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=38.84 E-value=2.9e+02 Score=28.13 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.4
Q ss_pred ccEEecCChHHHHHHHHHHhCCCC
Q 024255 173 SYKAAAGGSLSNSLVALARLGGKP 196 (270)
Q Consensus 173 ~~~~~~GGsAaNtAvaLARLG~~~ 196 (270)
......||.|...|..++++|+++
T Consensus 85 ~~~~rmGGnAgimAn~la~lg~~~ 108 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLSELGASR 108 (453)
T ss_pred CceEEeCChHHHHHHHHHhcCCce
Confidence 447889999999999999999983
No 59
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=38.04 E-value=92 Score=23.83 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHcCCCCccccccC---CCCceEEEEEcCCCCeEEEEec
Q 024255 215 LGGFYRAKLRRANVAFCSEPIKD---GTTGTVIVLTTPDAQRAMLAYQ 259 (270)
Q Consensus 215 ~Ge~I~e~L~e~GVdt~~v~~~~---g~TG~~~VLv~~dGeRTiv~~~ 259 (270)
.=+.+.+.|++.|+......... ...++.+.+.+|+|.+.-+.+|
T Consensus 81 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 81 AVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred HHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 34668899999999877654321 2455677778999998777664
No 60
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.31 E-value=1e+02 Score=23.04 Aligned_cols=45 Identities=16% Similarity=-0.019 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEe
Q 024255 214 PLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAY 258 (270)
Q Consensus 214 ~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~ 258 (270)
..=+.+.++|++.|+.+..........+..+.+.+|+|.+--+.+
T Consensus 76 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 76 EEVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 345778889999999865432222223677888899998866654
No 61
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=34.27 E-value=28 Score=38.57 Aligned_cols=8 Identities=63% Similarity=1.145 Sum_probs=4.2
Q ss_pred cCCCCCCC
Q 024255 78 NGGGGDLG 85 (270)
Q Consensus 78 ~~~~~~~~ 85 (270)
++|+||=|
T Consensus 854 ~~~~~d~~ 861 (1096)
T TIGR00927 854 GGGGSDGG 861 (1096)
T ss_pred ccCCCCcc
Confidence 45555554
No 62
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=33.80 E-value=14 Score=31.79 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=6.7
Q ss_pred hhhhhhhcccCc
Q 024255 33 QALVFRKFSLGK 44 (270)
Q Consensus 33 ~~~~~~~~~~~~ 44 (270)
+.|.+|..+||.
T Consensus 30 h~L~L~~v~Lga 41 (149)
T PF03066_consen 30 HQLSLRQVCLGA 41 (149)
T ss_dssp EEEEEEEEEE-T
T ss_pred cEEEEEEeecCC
Confidence 345666677764
No 63
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=33.66 E-value=22 Score=37.85 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=6.2
Q ss_pred hhhhhhhhhcc
Q 024255 31 KLQALVFRKFS 41 (270)
Q Consensus 31 ~~~~~~~~~~~ 41 (270)
++-..||+.|.
T Consensus 607 ~~~~~vf~~~~ 617 (784)
T PF04931_consen 607 KVSEQVFEAFC 617 (784)
T ss_pred HHHHHHHHHHH
Confidence 34455676664
No 64
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=33.17 E-value=1.3e+02 Score=22.69 Aligned_cols=49 Identities=10% Similarity=-0.065 Sum_probs=32.5
Q ss_pred eCCCchHHHHHHHHHHcCCCCccccccCC-CCceEEEEEcCCCCeEEEEe
Q 024255 210 VGSDPLGGFYRAKLRRANVAFCSEPIKDG-TTGTVIVLTTPDAQRAMLAY 258 (270)
Q Consensus 210 VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g-~TG~~~VLv~~dGeRTiv~~ 258 (270)
+.+...=+.+.+.|++.|+.+........ ..+..+.+.+|+|.+--+.+
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYA 117 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEe
Confidence 44444556789999999998765422222 23467888899998865543
No 65
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=32.54 E-value=1e+02 Score=22.92 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeE
Q 024255 215 LGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRA 254 (270)
Q Consensus 215 ~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRT 254 (270)
.=+.+.+.|++.|+.+..........+..+.+.+|+|.+-
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~i 106 (113)
T cd08345 67 EFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLL 106 (113)
T ss_pred HHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEE
Confidence 4577899999999987643222233567888889998774
No 66
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=29.88 E-value=67 Score=27.06 Aligned_cols=28 Identities=39% Similarity=0.599 Sum_probs=23.6
Q ss_pred EEecCChHHHHHHHHH-HhCCCCCCCCCcceEEEEE
Q 024255 175 KAAAGGSLSNSLVALA-RLGGKPIGGPALNVAMTGS 209 (270)
Q Consensus 175 ~~~~GGsAaNtAvaLA-RLG~~~~~~p~~~V~fVG~ 209 (270)
....||+++|+|+.+| .||.+. +.|+|.
T Consensus 135 ~~~~g~sV~~~a~~lA~~lG~~~-------I~L~G~ 163 (170)
T PF01973_consen 135 ILYSGGSVANTALQLAYYLGFKP-------IYLIGQ 163 (170)
T ss_pred cCCCCccHHHHHHHHHHHHCCCc-------EEEEee
Confidence 4679999999999999 599985 677764
No 67
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=29.50 E-value=1.6e+02 Score=22.01 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCCCccccccCCCCc-eEEEEEcCCCCeEEEE
Q 024255 216 GGFYRAKLRRANVAFCSEPIKDGTTG-TVIVLTTPDAQRAMLA 257 (270)
Q Consensus 216 Ge~I~e~L~e~GVdt~~v~~~~g~TG-~~~VLv~~dGeRTiv~ 257 (270)
-+.+.++|++.|+.+..-.. ...-| ..+.+.||+|.+--+.
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPT-DEPWGVRRFFVRDPFGKLVNIL 109 (112)
T ss_pred HHHHHHHHHhcCCeEecCCc-cCCCceEEEEEECCCCCEEEEE
Confidence 46778999999998653222 22223 5677889999886554
No 68
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=29.10 E-value=17 Score=19.62 Aligned_cols=9 Identities=67% Similarity=1.021 Sum_probs=3.4
Q ss_pred ecccccccc
Q 024255 47 VRGGFMGKK 55 (270)
Q Consensus 47 ~~~~~~~~~ 55 (270)
..|-|||||
T Consensus 5 AvGh~Mgkk 13 (14)
T PF02044_consen 5 AVGHFMGKK 13 (14)
T ss_dssp HHHCT----
T ss_pred ceeeeeccC
Confidence 357899997
No 69
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=28.02 E-value=1e+02 Score=29.26 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=48.9
Q ss_pred EEecCChHHHHHHHHHHhCCCC-CCCCCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccC
Q 024255 175 KAAAGGSLSNSLVALARLGGKP-IGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD 237 (270)
Q Consensus 175 ~~~~GGsAaNtAvaLARLG~~~-~~~p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~ 237 (270)
.-...|.-.+.+..|++|..+- ...+.|++++|++-+.-.. +.++..|+++||.++-.-...
T Consensus 159 ~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah-~RvI~TLr~Wgv~vDEafFLg 221 (264)
T PF06189_consen 159 KPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAH-ERVIRTLRSWGVRVDEAFFLG 221 (264)
T ss_pred CCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchh-HHHHHHHHHcCCcHhHHHHhC
Confidence 3458899999999999986552 1234599999999988777 999999999999988654433
No 70
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=27.73 E-value=1.3e+02 Score=21.64 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCe
Q 024255 216 GGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQR 253 (270)
Q Consensus 216 Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeR 253 (270)
=+.+.++|++.|+....... ....+..+.+.||+|.+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~DP~G~~ 111 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDV-PGDGVRQLFVRDPDGNR 111 (114)
T ss_pred HHHHHHHHHHcCCCcccccC-CCCCccEEEEECCCCCE
Confidence 35678999999998665432 23456777888998865
No 71
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=27.50 E-value=1.5e+02 Score=23.51 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCc
Q 024255 215 LGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVS 261 (270)
Q Consensus 215 ~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GA 261 (270)
.=+.+.+.|++.|+............+..+.+.+|+|.+--+...-+
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCcH
Confidence 34778999999999864322222235678888999998876665433
No 72
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=27.45 E-value=2.1e+02 Score=21.65 Aligned_cols=42 Identities=24% Similarity=0.168 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHcCCCCccccccCCCCc-eEEEEEcCCCCeEEEE
Q 024255 215 LGGFYRAKLRRANVAFCSEPIKDGTTG-TVIVLTTPDAQRAMLA 257 (270)
Q Consensus 215 ~Ge~I~e~L~e~GVdt~~v~~~~g~TG-~~~VLv~~dGeRTiv~ 257 (270)
.=+.+.++|++.|+.+..... +.+-| +.+.+.||+|.+--++
T Consensus 79 dvd~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 79 EVDALYAELVGAGYPGHKEPW-DAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHHHHHHHCCCCcCCCCc-cCCCCCEEEEEECCCCCEEEEe
Confidence 357888999999987654322 22333 5667789999775443
No 73
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=26.19 E-value=2e+02 Score=21.26 Aligned_cols=49 Identities=22% Similarity=0.112 Sum_probs=32.1
Q ss_pred eCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEe
Q 024255 210 VGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAY 258 (270)
Q Consensus 210 VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~ 258 (270)
+.+...=+.+.+.|++.|+...........-+..+.+.+|+|.+.-+.+
T Consensus 65 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 113 (117)
T cd07240 65 VASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFV 113 (117)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEE
Confidence 4443344668889999999876543222234567788899998866554
No 74
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.74 E-value=1.6e+02 Score=22.02 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=31.7
Q ss_pred eCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEE
Q 024255 210 VGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAML 256 (270)
Q Consensus 210 VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv 256 (270)
+.+...=+.+.+.+++.|+++..... ....|..+.+.||+|.+--+
T Consensus 67 v~~~~~~~~~~~~~~~~g~~v~~~~~-~~~~g~~~~~~DPdGn~ie~ 112 (114)
T cd07261 67 VDDGAAVDALYAEWQAKGVKIIQEPT-EMDFGYTFVALDPDGHRLRV 112 (114)
T ss_pred cCCHHHHHHHHHHHHHCCCeEecCcc-ccCCccEEEEECCCCCEEEe
Confidence 33323347788999999998765432 23567788899999987544
No 75
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.61 E-value=1.8e+02 Score=21.27 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEE
Q 024255 217 GFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAML 256 (270)
Q Consensus 217 e~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv 256 (270)
+.+.++|++.|+...... .....+..+.+.+|+|.+-.+
T Consensus 79 ~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~DP~G~~ie~ 117 (119)
T cd07263 79 DATYEELKARGVEFSEEP-REMPYGTVAVFRDPDGNLFVL 117 (119)
T ss_pred HHHHHHHHhCCCEEeecc-ccCCCceEEEEECCCCCEEEE
Confidence 568888888998666443 233567888999999988554
No 76
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=25.61 E-value=1.2e+02 Score=21.58 Aligned_cols=41 Identities=15% Similarity=-0.021 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEe
Q 024255 217 GFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAY 258 (270)
Q Consensus 217 e~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~ 258 (270)
..|..-+-=.|+...... ...++-.++||++.+|.|.+.+.
T Consensus 21 ~~i~~FCfP~G~~~~~~~-~~~~~~f~FvLT~~~G~r~Yg~C 61 (65)
T PF03456_consen 21 PSIPMFCFPDGIEISSQS-RPPPQFFSFVLTDEDGSRLYGYC 61 (65)
T ss_dssp HHHHHHHS-S-CCCCGGG--GSSCEEEEEEE-TTS-EEEEEE
T ss_pred hhCCccCCCCCcEeeccc-cCCCeEEEEEEECCCCCEEEEEE
Confidence 344444445677666554 23478899999999999987654
No 77
>PHA03171 UL37 tegument protein; Provisional
Probab=25.18 E-value=32 Score=34.64 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=22.8
Q ss_pred CCCCCcccccccC-ccccCCCCCCcccccccCCCCCC
Q 024255 85 GRDNYEEDDEAGD-ESEADDDGDEYDEEISGSASVLP 120 (270)
Q Consensus 85 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 120 (270)
|...++||.+.+- ..+++.+|.|+|.|++.++.+-+
T Consensus 83 g~e~~~~~~~~~~~d~~~~~~~~eee~e~~~pevnp~ 119 (499)
T PHA03171 83 GEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEVNPL 119 (499)
T ss_pred chhhhhcCCcccCCchhhhhhhhhhhccCCCCCCCCc
Confidence 4556667766663 34555566677778888776654
No 78
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=24.48 E-value=86 Score=30.81 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=12.5
Q ss_pred ccccccCCCCCCC-CCcEEEEcCcceeeEeec
Q 024255 109 DEEISGSASVLPE-RWDVLGLGQAMVDFSGMV 139 (270)
Q Consensus 109 ~~~~~~~~~~~~~-~~~VlvIG~alVDii~~v 139 (270)
|||.--+.-++.. ..-|+| .+|-+-+.
T Consensus 290 EeeplnsedDvsdt~nvVvC----qyDKV~Rs 317 (348)
T KOG2652|consen 290 EEEPLNSEDDVSDTQNVVVC----QYDKVNRS 317 (348)
T ss_pred ccccccCcccccccceeEEE----eeeeeccc
Confidence 4444444455552 323333 45666544
No 79
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=24.03 E-value=36 Score=37.77 Aligned_cols=29 Identities=34% Similarity=0.412 Sum_probs=16.1
Q ss_pred ccccccCccccCCCC--CCcccccccCCCCC
Q 024255 91 EDDEAGDESEADDDG--DEYDEEISGSASVL 119 (270)
Q Consensus 91 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 119 (270)
||++++..++++||+ ||++.++-.|-.+.
T Consensus 319 eDed~~~~ed~eDde~~deYsDDeD~SWkVR 349 (1233)
T KOG1824|consen 319 EDEDAMFLEDEEDDEQDDEYSDDEDMSWKVR 349 (1233)
T ss_pred cchhhhhhhccccchhccccccccchhHHHH
Confidence 555555555556655 66666655554443
No 80
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.78 E-value=1.6e+02 Score=21.94 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=27.7
Q ss_pred EeCCCchHHHHHHHHHHcCCCCccccccCCCCc-eEEEEEcCCCCeE
Q 024255 209 SVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTG-TVIVLTTPDAQRA 254 (270)
Q Consensus 209 ~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG-~~~VLv~~dGeRT 254 (270)
.|.+...=+.+.+.|++.|+........ ...| +.+++.||+|.+-
T Consensus 77 ~v~~~~~v~~~~~~l~~~g~~~~~~~~~-~~~g~~~~~~~DPdG~~i 122 (125)
T cd07241 77 SVGSKEAVDELTERLRADGYLIIGEPRT-TGDGYYESVILDPEGNRI 122 (125)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEeCcee-cCCCeEEEEEECCCCCEE
Confidence 4444344578899999999976642221 2233 3345679998764
No 81
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=22.38 E-value=2.2e+02 Score=21.13 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeE
Q 024255 216 GGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRA 254 (270)
Q Consensus 216 Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRT 254 (270)
=+.+.+.|.+.|+.+..-.......+..+.+.+|+|.+-
T Consensus 72 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~ 110 (114)
T cd07247 72 VDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVF 110 (114)
T ss_pred HHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEE
Confidence 456778889999876543322223667888889998764
No 82
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=21.96 E-value=2.2e+02 Score=18.07 Aligned_cols=32 Identities=6% Similarity=0.020 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHcCCCCccccccCCCCceEEEE
Q 024255 215 LGGFYRAKLRRANVAFCSEPIKDGTTGTVIVL 246 (270)
Q Consensus 215 ~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VL 246 (270)
+-..+.+.|.+.+|+...+......+..++++
T Consensus 16 ~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v 47 (60)
T cd04868 16 VAAKIFSALAEAGINVDMISQSESEVNISFTV 47 (60)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEE
Confidence 44668899999999998775432223344443
No 83
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.77 E-value=47 Score=38.20 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=9.7
Q ss_pred CCCCcccccccCccccCCCCC
Q 024255 86 RDNYEEDDEAGDESEADDDGD 106 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ 106 (270)
-|..+||+|.+++.+++||||
T Consensus 1742 ddddddd~EaEdddDddDdDd 1762 (3015)
T KOG0943|consen 1742 DDDDDDDAEAEDDDDDDDDDD 1762 (3015)
T ss_pred ccccccchhhccccccccccc
Confidence 344445555544444444443
No 84
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=21.72 E-value=1.6e+02 Score=21.54 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeE
Q 024255 215 LGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRA 254 (270)
Q Consensus 215 ~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRT 254 (270)
.=+.+.++|++.|+....-..........+.+.||+|.+-
T Consensus 66 dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~i 105 (108)
T PF12681_consen 66 DVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRI 105 (108)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EE
T ss_pred CHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEE
Confidence 3567778899999886543333233448888889998763
No 85
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.62 E-value=1.4e+02 Score=21.77 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCcceEEEEEeC------CCchHHHHHHHHHHcCCCCcccc
Q 024255 182 LSNSLVALARLGGKPIGGPALNVAMTGSVG------SDPLGGFYRAKLRRANVAFCSEP 234 (270)
Q Consensus 182 AaNtAvaLARLG~~~~~~p~~~V~fVG~VG------dD~~Ge~I~e~L~e~GVdt~~v~ 234 (270)
++=.|..++++|.+ |.++..-. +....+.+.+.|++.||++..-.
T Consensus 11 g~E~A~~l~~~g~~--------vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~ 61 (80)
T PF00070_consen 11 GIELAEALAELGKE--------VTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNT 61 (80)
T ss_dssp HHHHHHHHHHTTSE--------EEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESE
T ss_pred HHHHHHHHHHhCcE--------EEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 56678888899987 57766432 22357889999999999877543
No 86
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=20.89 E-value=2e+02 Score=21.48 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEE
Q 024255 217 GFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAM 255 (270)
Q Consensus 217 e~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTi 255 (270)
+.+.++|++.|+........ ...+..+.+.+|+|.+.-
T Consensus 82 d~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~DpdG~~iE 119 (121)
T cd07233 82 YAACERLEEMGVEVTKPPGD-GGMKGIAFIKDPDGYWIE 119 (121)
T ss_pred HHHHHHHHHCCCEEeeCCcc-CCCceEEEEECCCCCEEE
Confidence 55789999999987654322 245566667899987743
No 87
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.88 E-value=3.2e+02 Score=20.84 Aligned_cols=42 Identities=14% Similarity=-0.088 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEe
Q 024255 216 GGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAY 258 (270)
Q Consensus 216 Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~ 258 (270)
=+.+.+.|++.|+....-. .....++.+.+.||+|.+--+.+
T Consensus 82 vd~~~~~l~~~G~~i~~~p-~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 82 VDELVEKALAAGGKEFREP-QDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHCCCcccCCc-ccCCceEEEEEECCCCCEEEEEE
Confidence 4678999999999865322 22234567788899998866654
No 88
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.50 E-value=2.9e+02 Score=20.56 Aligned_cols=41 Identities=27% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEE
Q 024255 216 GGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLA 257 (270)
Q Consensus 216 Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~ 257 (270)
=+.+.++|.+.|+.+..... ....+..+.+.+|+|.+--++
T Consensus 80 l~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~DP~G~~ie~~ 120 (122)
T cd08354 80 LAEWEAHLEAKGVAIESEVQ-WPRGGRSLYFRDPDGNLLELA 120 (122)
T ss_pred HHHHHHHHHhcCCceecccc-CCCCeeEEEEECCCCCEEEEe
Confidence 35688888999997654332 234567888889999875443
No 89
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=20.38 E-value=2.9e+02 Score=20.93 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCCccccccC-CCCceEEEEEcCCCCeEEEE
Q 024255 216 GGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLA 257 (270)
Q Consensus 216 Ge~I~e~L~e~GVdt~~v~~~~-g~TG~~~VLv~~dGeRTiv~ 257 (270)
=+.+.+.|++.|+.+....... ...+..+.+.+|+|.+--++
T Consensus 75 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~ 117 (122)
T cd07265 75 LEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELY 117 (122)
T ss_pred HHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEE
Confidence 4668999999999865432211 23466778889999875443
Done!