Query 024256
Match_columns 270
No_of_seqs 328 out of 2354
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01303 IMP_DH_rel_1 IMP deh 99.9 1.6E-21 3.6E-26 178.4 15.4 151 1-165 51-201 (475)
2 PRK07807 inosine 5-monophospha 99.9 7.4E-21 1.6E-25 174.3 16.0 151 1-165 52-203 (479)
3 COG2524 Predicted transcriptio 99.8 2.1E-20 4.5E-25 153.1 13.0 121 41-166 170-290 (294)
4 PTZ00314 inosine-5'-monophosph 99.8 6.6E-20 1.4E-24 169.2 14.8 152 1-165 58-216 (495)
5 PRK15094 magnesium/cobalt effl 99.8 3E-19 6.6E-24 154.9 16.1 206 28-247 53-273 (292)
6 TIGR03520 GldE gliding motilit 99.8 7.2E-19 1.6E-23 159.4 16.7 205 28-247 177-399 (408)
7 PRK07107 inosine 5-monophospha 99.8 3E-19 6.6E-24 164.6 13.8 153 1-165 59-218 (502)
8 TIGR01302 IMP_dehydrog inosine 99.8 2.6E-18 5.6E-23 157.6 16.2 152 1-165 42-199 (450)
9 COG3620 Predicted transcriptio 99.8 4.3E-18 9.2E-23 129.8 13.7 118 43-165 65-182 (187)
10 PLN02274 inosine-5'-monophosph 99.8 6.7E-18 1.5E-22 156.0 16.6 151 1-166 62-221 (505)
11 PRK05567 inosine 5'-monophosph 99.8 1.9E-17 4.1E-22 153.4 16.3 153 1-166 49-204 (486)
12 PRK11573 hypothetical protein; 99.7 4.6E-17 1E-21 147.6 16.9 205 30-246 175-394 (413)
13 cd04619 CBS_pair_6 The CBS dom 99.7 8.5E-17 1.9E-21 120.3 13.9 109 55-164 3-113 (114)
14 cd04630 CBS_pair_17 The CBS do 99.7 1.7E-16 3.6E-21 118.6 14.3 110 54-164 2-113 (114)
15 PRK10892 D-arabinose 5-phospha 99.7 7.8E-17 1.7E-21 142.6 14.0 123 41-165 200-323 (326)
16 cd04603 CBS_pair_KefB_assoc Th 99.7 1.5E-16 3.4E-21 118.4 13.4 108 54-164 2-110 (111)
17 COG3448 CBS-domain-containing 99.7 1.1E-16 2.4E-21 133.7 13.6 128 39-168 241-373 (382)
18 COG1253 TlyC Hemolysins and re 99.7 3.4E-16 7.4E-21 143.1 17.8 206 28-246 192-412 (429)
19 cd04593 CBS_pair_EriC_assoc_ba 99.7 3.7E-16 8E-21 116.8 13.7 110 54-164 2-114 (115)
20 cd04617 CBS_pair_4 The CBS dom 99.7 3.6E-16 7.7E-21 117.6 13.6 110 54-164 2-117 (118)
21 cd04641 CBS_pair_28 The CBS do 99.7 4.5E-16 9.8E-21 117.4 14.1 110 54-164 2-119 (120)
22 PRK11543 gutQ D-arabinose 5-ph 99.7 2.1E-16 4.5E-21 139.6 14.0 122 42-165 196-318 (321)
23 cd04618 CBS_pair_5 The CBS dom 99.7 2.9E-16 6.3E-21 114.6 12.3 93 54-164 2-97 (98)
24 cd04620 CBS_pair_7 The CBS dom 99.7 7.3E-16 1.6E-20 115.1 13.9 110 54-164 2-114 (115)
25 cd04587 CBS_pair_CAP-ED_DUF294 99.7 8.2E-16 1.8E-20 114.3 13.7 111 54-164 2-112 (113)
26 cd04600 CBS_pair_HPP_assoc Thi 99.7 6.2E-16 1.3E-20 117.0 13.2 111 53-164 2-123 (124)
27 cd04611 CBS_pair_PAS_GGDEF_DUF 99.7 1.5E-15 3.3E-20 112.4 14.7 109 54-164 2-110 (111)
28 cd04608 CBS_pair_PALP_assoc Th 99.7 2.6E-16 5.7E-21 119.7 10.8 112 53-165 2-123 (124)
29 cd04623 CBS_pair_10 The CBS do 99.7 1.2E-15 2.5E-20 113.3 14.0 109 54-164 2-112 (113)
30 cd04613 CBS_pair_SpoIVFB_EriC_ 99.7 8.6E-16 1.9E-20 114.2 13.2 110 54-164 2-113 (114)
31 cd04607 CBS_pair_NTP_transfera 99.7 1.5E-15 3.3E-20 113.1 14.1 109 54-164 3-112 (113)
32 cd04622 CBS_pair_9 The CBS dom 99.7 2E-15 4.3E-20 112.2 14.6 111 54-164 2-112 (113)
33 cd04615 CBS_pair_2 The CBS dom 99.7 1.3E-15 2.7E-20 113.4 13.2 109 55-164 3-112 (113)
34 cd04631 CBS_pair_18 The CBS do 99.7 1.2E-15 2.6E-20 115.6 13.1 110 54-164 2-124 (125)
35 cd04604 CBS_pair_KpsF_GutQ_ass 99.7 1.2E-15 2.5E-20 113.6 12.8 111 53-164 2-113 (114)
36 cd04588 CBS_pair_CAP-ED_DUF294 99.7 2.7E-15 5.9E-20 111.0 14.7 108 54-164 2-109 (110)
37 cd04643 CBS_pair_30 The CBS do 99.7 1.3E-15 2.9E-20 113.7 12.8 108 54-164 2-115 (116)
38 cd04595 CBS_pair_DHH_polyA_Pol 99.7 2.9E-15 6.2E-20 111.0 14.5 108 53-164 2-109 (110)
39 cd04624 CBS_pair_11 The CBS do 99.7 2.8E-15 6E-20 111.3 14.2 109 54-164 2-111 (112)
40 cd04639 CBS_pair_26 The CBS do 99.7 1.6E-15 3.4E-20 112.5 12.8 108 54-164 2-110 (111)
41 cd04800 CBS_pair_CAP-ED_DUF294 99.7 3.3E-15 7.1E-20 110.8 14.5 109 54-164 2-110 (111)
42 cd04589 CBS_pair_CAP-ED_DUF294 99.7 3.5E-15 7.7E-20 110.7 14.2 109 54-164 2-110 (111)
43 cd04625 CBS_pair_12 The CBS do 99.7 3.9E-15 8.5E-20 110.5 14.4 109 54-164 2-111 (112)
44 cd04642 CBS_pair_29 The CBS do 99.7 1.7E-15 3.8E-20 115.2 12.7 110 54-164 2-125 (126)
45 cd04605 CBS_pair_MET2_assoc Th 99.7 4.4E-15 9.6E-20 109.9 14.5 107 53-164 2-109 (110)
46 COG2905 Predicted signal-trans 99.7 5.5E-16 1.2E-20 139.9 11.2 122 40-165 146-268 (610)
47 cd04590 CBS_pair_CorC_HlyC_ass 99.7 3.9E-15 8.5E-20 110.3 14.1 107 54-164 2-110 (111)
48 cd04802 CBS_pair_3 The CBS dom 99.7 5.3E-15 1.2E-19 109.8 14.9 110 54-164 2-111 (112)
49 cd04621 CBS_pair_8 The CBS dom 99.7 3E-15 6.6E-20 115.6 13.8 109 54-164 2-134 (135)
50 cd04803 CBS_pair_15 The CBS do 99.7 2.5E-15 5.4E-20 113.3 13.0 110 54-164 2-121 (122)
51 cd04627 CBS_pair_14 The CBS do 99.7 2.7E-15 5.9E-20 113.6 13.1 109 54-163 2-121 (123)
52 KOG2550 IMP dehydrogenase/GMP 99.7 3.1E-16 6.7E-21 136.2 8.7 151 1-165 70-226 (503)
53 cd04801 CBS_pair_M50_like This 99.7 1.8E-15 3.9E-20 112.9 11.7 108 54-164 2-113 (114)
54 cd04582 CBS_pair_ABC_OpuCA_ass 99.7 3.5E-15 7.6E-20 109.7 13.0 103 54-164 2-105 (106)
55 cd04626 CBS_pair_13 The CBS do 99.7 3.7E-15 8E-20 110.6 13.1 108 54-164 2-110 (111)
56 cd04636 CBS_pair_23 The CBS do 99.7 2.9E-15 6.3E-20 114.9 12.9 109 54-164 2-131 (132)
57 cd04596 CBS_pair_DRTGG_assoc T 99.6 4.6E-15 9.9E-20 109.7 13.4 105 53-164 2-107 (108)
58 cd04629 CBS_pair_16 The CBS do 99.6 3.2E-15 6.9E-20 111.3 12.0 109 54-164 2-113 (114)
59 cd04612 CBS_pair_SpoIVFB_EriC_ 99.6 7.3E-15 1.6E-19 108.7 13.9 109 54-164 2-110 (111)
60 cd04583 CBS_pair_ABC_OpuCA_ass 99.6 5.1E-15 1.1E-19 109.2 12.6 106 53-164 2-108 (109)
61 cd04585 CBS_pair_ACT_assoc2 Th 99.6 8.1E-15 1.8E-19 110.2 14.0 110 54-164 2-121 (122)
62 cd04614 CBS_pair_1 The CBS dom 99.6 3.2E-15 6.9E-20 108.6 11.2 93 54-164 2-95 (96)
63 PRK01862 putative voltage-gate 99.6 4.1E-15 8.9E-20 141.0 15.1 126 38-166 442-570 (574)
64 COG4109 Predicted transcriptio 99.6 4.3E-15 9.2E-20 127.0 13.5 130 43-179 188-320 (432)
65 cd04632 CBS_pair_19 The CBS do 99.6 5.8E-15 1.3E-19 112.5 12.9 110 54-164 2-127 (128)
66 cd04640 CBS_pair_27 The CBS do 99.6 6.7E-15 1.5E-19 112.0 13.0 111 54-164 2-125 (126)
67 cd04609 CBS_pair_PALP_assoc2 T 99.6 8.5E-15 1.8E-19 108.1 13.0 108 54-164 2-109 (110)
68 cd04637 CBS_pair_24 The CBS do 99.6 8.9E-15 1.9E-19 110.4 13.2 110 54-164 2-121 (122)
69 cd04633 CBS_pair_20 The CBS do 99.6 8.5E-15 1.8E-19 110.2 12.7 109 54-164 2-120 (121)
70 cd04586 CBS_pair_BON_assoc Thi 99.6 4.7E-15 1E-19 114.2 11.5 110 53-164 2-134 (135)
71 cd04635 CBS_pair_22 The CBS do 99.6 6.3E-15 1.4E-19 111.1 11.7 110 54-164 2-121 (122)
72 cd04599 CBS_pair_GGDEF_assoc2 99.6 1.9E-14 4.1E-19 105.4 13.8 103 54-164 2-104 (105)
73 cd04610 CBS_pair_ParBc_assoc T 99.6 1.9E-14 4.1E-19 105.8 13.7 105 53-164 2-106 (107)
74 cd04601 CBS_pair_IMPDH This cd 99.6 2.3E-14 4.9E-19 105.9 12.6 106 53-164 2-109 (110)
75 cd04602 CBS_pair_IMPDH_2 This 99.6 2.3E-14 4.9E-19 107.0 12.7 106 53-164 2-113 (114)
76 COG0517 FOG: CBS domain [Gener 99.6 5.8E-14 1.3E-18 104.9 14.6 109 53-163 7-117 (117)
77 TIGR00400 mgtE Mg2+ transporte 99.6 3.5E-14 7.6E-19 130.6 15.8 126 32-167 121-252 (449)
78 cd02205 CBS_pair The CBS domai 99.6 7.2E-14 1.6E-18 102.7 13.8 110 54-164 2-112 (113)
79 cd04606 CBS_pair_Mg_transporte 99.6 3.5E-14 7.7E-19 105.0 12.1 101 58-165 2-108 (109)
80 TIGR00393 kpsF KpsF/GutQ famil 99.6 2.1E-14 4.6E-19 123.6 12.3 113 42-158 154-268 (268)
81 cd04584 CBS_pair_ACT_assoc Thi 99.6 4E-14 8.6E-19 106.5 12.3 109 54-164 2-120 (121)
82 cd04594 CBS_pair_EriC_assoc_ar 99.6 6.7E-14 1.5E-18 102.8 12.8 100 56-164 4-103 (104)
83 cd04634 CBS_pair_21 The CBS do 99.6 1.2E-13 2.5E-18 107.7 13.7 109 54-164 2-142 (143)
84 cd04591 CBS_pair_EriC_assoc_eu 99.5 1.2E-13 2.7E-18 101.8 12.3 99 53-164 2-104 (105)
85 TIGR01137 cysta_beta cystathio 99.5 1.3E-13 2.9E-18 127.4 15.4 120 40-165 332-452 (454)
86 cd04598 CBS_pair_GGDEF_assoc T 99.5 1.9E-13 4.1E-18 102.5 12.6 110 54-164 2-118 (119)
87 cd04638 CBS_pair_25 The CBS do 99.5 1.1E-12 2.3E-17 96.5 13.6 103 54-164 2-105 (106)
88 COG4535 CorC Putative Mg2+ and 99.5 2.7E-13 5.8E-18 110.3 10.1 140 31-175 56-197 (293)
89 COG4536 CorB Putative Mg2+ and 99.5 4.9E-13 1.1E-17 115.6 11.8 178 31-219 189-368 (423)
90 COG3448 CBS-domain-containing 99.4 2.9E-13 6.4E-18 113.4 7.6 57 109-165 244-300 (382)
91 PRK14869 putative manganese-de 99.4 2.4E-12 5.2E-17 121.6 14.3 122 42-165 67-302 (546)
92 cd04592 CBS_pair_EriC_assoc_eu 99.4 3.6E-12 7.9E-17 98.2 11.8 97 54-151 2-119 (133)
93 COG2524 Predicted transcriptio 99.4 1.9E-12 4.2E-17 106.6 8.2 123 108-266 170-292 (294)
94 COG2239 MgtE Mg/Co/Ni transpor 99.3 9.1E-12 2E-16 113.1 11.8 117 41-166 130-252 (451)
95 COG3620 Predicted transcriptio 99.3 1.6E-11 3.4E-16 94.2 9.1 73 92-167 49-121 (187)
96 PRK15094 magnesium/cobalt effl 99.3 2.4E-11 5.1E-16 105.6 8.9 141 89-267 48-191 (292)
97 PF00571 CBS: CBS domain CBS d 99.2 3.3E-11 7.2E-16 78.5 7.3 55 112-166 1-55 (57)
98 KOG1764 5'-AMP-activated prote 99.2 1.2E-10 2.7E-15 104.3 11.5 113 53-166 162-285 (381)
99 TIGR03520 GldE gliding motilit 99.2 3.5E-11 7.6E-16 109.3 7.0 67 99-165 180-249 (408)
100 cd04608 CBS_pair_PALP_assoc Th 99.2 1.9E-10 4.2E-15 87.3 9.9 123 118-264 2-124 (124)
101 cd04618 CBS_pair_5 The CBS dom 99.2 7.4E-11 1.6E-15 85.9 7.2 47 119-165 2-49 (98)
102 cd04614 CBS_pair_1 The CBS dom 99.2 1.6E-10 3.4E-15 83.7 8.1 47 119-165 2-48 (96)
103 cd04641 CBS_pair_28 The CBS do 99.1 2E-10 4.4E-15 86.3 7.6 47 119-165 2-48 (120)
104 KOG1764 5'-AMP-activated prote 99.1 9.6E-10 2.1E-14 98.6 12.7 115 54-169 238-361 (381)
105 PRK11573 hypothetical protein; 99.0 2.1E-09 4.5E-14 97.9 11.8 66 100-165 177-245 (413)
106 COG1253 TlyC Hemolysins and re 99.0 2.8E-09 6E-14 97.8 11.4 76 88-165 186-264 (429)
107 PRK11543 gutQ D-arabinose 5-ph 99.0 3.8E-10 8.2E-15 99.7 5.5 120 110-263 197-318 (321)
108 cd04619 CBS_pair_6 The CBS dom 99.0 1.4E-09 3E-14 81.0 7.8 47 119-165 2-48 (114)
109 PF00571 CBS: CBS domain CBS d 99.0 1.2E-09 2.7E-14 71.0 6.5 54 45-101 1-55 (57)
110 TIGR00400 mgtE Mg2+ transporte 99.0 7.1E-10 1.5E-14 102.2 6.1 141 86-267 109-254 (449)
111 cd04593 CBS_pair_EriC_assoc_ba 99.0 2.8E-09 6E-14 79.3 7.7 48 118-165 1-48 (115)
112 cd04603 CBS_pair_KefB_assoc Th 98.9 1.3E-09 2.9E-14 80.7 5.2 47 119-165 2-48 (111)
113 TIGR01186 proV glycine betaine 98.9 3E-08 6.5E-13 88.7 14.4 107 54-167 251-358 (363)
114 cd04600 CBS_pair_HPP_assoc Thi 98.9 4.3E-09 9.3E-14 79.2 7.5 48 118-165 2-49 (124)
115 PRK01862 putative voltage-gate 98.9 2.9E-09 6.3E-14 101.2 7.8 125 109-266 446-572 (574)
116 PRK10892 D-arabinose 5-phospha 98.9 2.8E-09 6E-14 94.4 6.9 57 109-165 201-259 (326)
117 PRK10070 glycine betaine trans 98.9 3.3E-08 7.1E-13 89.6 13.9 116 44-166 275-392 (400)
118 cd04643 CBS_pair_30 The CBS do 98.9 5.1E-09 1.1E-13 77.8 7.3 48 119-166 2-49 (116)
119 cd04627 CBS_pair_14 The CBS do 98.9 2.4E-08 5.2E-13 75.2 10.7 47 119-165 2-49 (123)
120 TIGR01302 IMP_dehydrog inosine 98.9 4.1E-09 8.9E-14 97.1 7.5 119 111-266 81-202 (450)
121 cd04590 CBS_pair_CorC_HlyC_ass 98.9 8.8E-09 1.9E-13 75.9 8.0 109 119-263 2-111 (111)
122 cd04617 CBS_pair_4 The CBS dom 98.9 4.9E-09 1.1E-13 78.5 6.4 48 119-166 2-49 (118)
123 COG4109 Predicted transcriptio 98.9 2E-08 4.2E-13 86.7 10.7 170 53-266 134-307 (432)
124 PRK07807 inosine 5-monophospha 98.9 5.1E-09 1.1E-13 96.6 7.5 118 110-266 89-206 (479)
125 COG2239 MgtE Mg/Co/Ni transpor 98.9 6.2E-09 1.3E-13 94.8 7.5 130 100-268 122-256 (451)
126 cd04630 CBS_pair_17 The CBS do 98.9 1.2E-08 2.6E-13 75.7 7.8 50 118-167 1-51 (114)
127 TIGR01137 cysta_beta cystathio 98.9 7.4E-09 1.6E-13 95.8 8.1 58 109-166 334-391 (454)
128 cd04582 CBS_pair_ABC_OpuCA_ass 98.8 8.1E-09 1.8E-13 75.5 6.7 47 119-165 2-48 (106)
129 cd04605 CBS_pair_MET2_assoc Th 98.8 9.5E-09 2.1E-13 75.6 7.1 48 118-165 2-49 (110)
130 cd04583 CBS_pair_ABC_OpuCA_ass 98.8 9.4E-09 2E-13 75.4 6.6 48 118-165 2-49 (109)
131 cd04615 CBS_pair_2 The CBS dom 98.8 1.7E-08 3.6E-13 74.7 7.6 47 119-165 2-48 (113)
132 COG4536 CorB Putative Mg2+ and 98.8 1.7E-09 3.7E-14 93.9 2.5 58 108-165 198-258 (423)
133 cd04642 CBS_pair_29 The CBS do 98.8 8.9E-09 1.9E-13 78.0 6.3 47 119-165 2-48 (126)
134 cd04607 CBS_pair_NTP_transfera 98.8 6.5E-09 1.4E-13 77.0 5.4 110 119-262 3-112 (113)
135 cd04640 CBS_pair_27 The CBS do 98.8 1.6E-08 3.4E-13 76.7 7.5 46 119-164 2-47 (126)
136 cd04624 CBS_pair_11 The CBS do 98.8 2.1E-08 4.6E-13 74.0 7.9 48 119-166 2-49 (112)
137 cd04801 CBS_pair_M50_like This 98.8 1.1E-08 2.3E-13 76.0 6.3 47 119-165 2-49 (114)
138 cd04596 CBS_pair_DRTGG_assoc T 98.8 1.3E-08 2.9E-13 74.8 6.3 106 118-262 2-107 (108)
139 cd04637 CBS_pair_24 The CBS do 98.8 5.9E-08 1.3E-12 72.8 9.9 48 119-167 2-49 (122)
140 cd04631 CBS_pair_18 The CBS do 98.8 1.6E-08 3.6E-13 76.1 6.5 48 119-166 2-50 (125)
141 cd04621 CBS_pair_8 The CBS dom 98.8 1.7E-08 3.6E-13 77.8 6.6 48 119-166 2-49 (135)
142 PRK05567 inosine 5'-monophosph 98.8 1.9E-08 4.2E-13 93.6 7.7 120 110-266 87-206 (486)
143 TIGR01303 IMP_DH_rel_1 IMP deh 98.8 1.7E-08 3.6E-13 93.1 7.2 157 58-266 48-204 (475)
144 cd04623 CBS_pair_10 The CBS do 98.8 3.7E-08 8E-13 72.6 7.8 48 119-166 2-49 (113)
145 cd04635 CBS_pair_22 The CBS do 98.8 9.5E-09 2.1E-13 77.1 4.6 47 119-165 2-48 (122)
146 cd04803 CBS_pair_15 The CBS do 98.8 3E-08 6.5E-13 74.3 7.3 48 119-166 2-49 (122)
147 KOG0474 Cl- channel CLC-7 and 98.8 1.9E-08 4.1E-13 92.5 7.2 122 41-165 580-745 (762)
148 cd04639 CBS_pair_26 The CBS do 98.7 1.1E-07 2.5E-12 69.9 10.1 48 119-166 2-49 (111)
149 cd04629 CBS_pair_16 The CBS do 98.7 2.4E-08 5.3E-13 73.8 6.3 49 119-167 2-50 (114)
150 cd04604 CBS_pair_KpsF_GutQ_ass 98.7 4.1E-08 9E-13 72.5 7.5 111 119-262 3-113 (114)
151 cd04620 CBS_pair_7 The CBS dom 98.7 4.1E-08 8.9E-13 72.9 7.1 46 119-165 2-48 (115)
152 cd04622 CBS_pair_9 The CBS dom 98.7 5.6E-08 1.2E-12 71.7 7.8 47 118-165 1-47 (113)
153 cd04588 CBS_pair_CAP-ED_DUF294 98.7 5.3E-08 1.2E-12 71.6 7.6 47 118-165 1-47 (110)
154 cd04606 CBS_pair_Mg_transporte 98.7 1.8E-08 3.9E-13 74.2 4.8 103 123-264 2-109 (109)
155 cd04609 CBS_pair_PALP_assoc2 T 98.7 5E-08 1.1E-12 71.5 7.2 47 119-166 2-48 (110)
156 cd04586 CBS_pair_BON_assoc Thi 98.7 2.7E-08 5.8E-13 76.3 5.7 48 118-165 2-49 (135)
157 cd04585 CBS_pair_ACT_assoc2 Th 98.7 5.5E-08 1.2E-12 72.6 7.1 46 119-165 2-47 (122)
158 PLN02274 inosine-5'-monophosph 98.7 4.1E-08 9E-13 91.3 7.6 116 115-266 105-223 (505)
159 COG2905 Predicted signal-trans 98.7 5.9E-08 1.3E-12 88.5 8.0 111 110-266 149-271 (610)
160 cd04636 CBS_pair_23 The CBS do 98.7 4.5E-08 9.8E-13 74.7 6.3 48 119-166 2-49 (132)
161 cd04602 CBS_pair_IMPDH_2 This 98.7 3.1E-08 6.8E-13 73.5 5.3 46 119-164 3-51 (114)
162 cd02205 CBS_pair The CBS domai 98.7 1.4E-07 3.1E-12 68.7 8.8 49 119-167 2-50 (113)
163 cd04587 CBS_pair_CAP-ED_DUF294 98.7 6.6E-08 1.4E-12 71.4 6.9 47 119-166 2-48 (113)
164 cd04611 CBS_pair_PAS_GGDEF_DUF 98.7 7.6E-08 1.7E-12 70.7 7.1 47 119-166 2-48 (111)
165 cd04601 CBS_pair_IMPDH This cd 98.7 3.5E-08 7.5E-13 72.4 5.2 108 118-262 2-109 (110)
166 cd04613 CBS_pair_SpoIVFB_EriC_ 98.7 6.7E-08 1.4E-12 71.3 6.7 47 119-165 2-48 (114)
167 cd04632 CBS_pair_19 The CBS do 98.7 1E-07 2.2E-12 72.2 7.8 47 119-165 2-48 (128)
168 cd04594 CBS_pair_EriC_assoc_ar 98.7 7E-08 1.5E-12 70.4 6.6 44 121-165 4-47 (104)
169 cd04612 CBS_pair_SpoIVFB_EriC_ 98.7 7.8E-08 1.7E-12 70.6 6.9 47 118-165 1-47 (111)
170 cd04589 CBS_pair_CAP-ED_DUF294 98.6 1.1E-07 2.3E-12 70.1 7.3 46 119-165 2-47 (111)
171 cd04800 CBS_pair_CAP-ED_DUF294 98.6 1.1E-07 2.4E-12 70.0 7.3 47 118-165 1-47 (111)
172 cd04595 CBS_pair_DHH_polyA_Pol 98.6 1.1E-07 2.4E-12 69.9 7.3 47 118-165 2-48 (110)
173 cd04626 CBS_pair_13 The CBS do 98.6 4.7E-08 1E-12 72.0 5.0 47 119-165 2-48 (111)
174 PTZ00314 inosine-5'-monophosph 98.6 6.9E-08 1.5E-12 89.7 6.5 120 111-266 97-219 (495)
175 PRK07107 inosine 5-monophospha 98.6 4.1E-08 8.8E-13 91.2 4.7 119 111-264 95-219 (502)
176 cd04584 CBS_pair_ACT_assoc Thi 98.6 1.1E-07 2.4E-12 71.0 5.8 47 119-165 2-48 (121)
177 cd04599 CBS_pair_GGDEF_assoc2 98.6 9.1E-08 2E-12 69.6 5.2 46 119-165 2-47 (105)
178 cd04610 CBS_pair_ParBc_assoc T 98.6 1.2E-07 2.7E-12 69.2 5.5 46 118-164 2-47 (107)
179 cd04633 CBS_pair_20 The CBS do 98.5 3E-07 6.5E-12 68.7 7.2 46 119-165 2-47 (121)
180 TIGR00393 kpsF KpsF/GutQ famil 98.5 9.8E-08 2.1E-12 82.1 5.0 56 110-165 155-211 (268)
181 PRK14869 putative manganese-de 98.5 6.5E-08 1.4E-12 91.6 3.9 140 23-165 225-391 (546)
182 cd04802 CBS_pair_3 The CBS dom 98.5 3.7E-07 8E-12 67.2 7.1 48 119-167 2-49 (112)
183 COG0517 FOG: CBS domain [Gener 98.5 4.3E-07 9.4E-12 67.3 6.9 53 114-167 3-55 (117)
184 cd04598 CBS_pair_GGDEF_assoc T 98.5 3.6E-07 7.7E-12 68.1 6.5 46 119-165 2-48 (119)
185 cd04597 CBS_pair_DRTGG_assoc2 98.5 3.6E-07 7.9E-12 68.1 6.4 55 110-164 58-112 (113)
186 COG4535 CorC Putative Mg2+ and 98.5 4.2E-08 9.1E-13 80.3 1.1 90 63-165 33-125 (293)
187 cd04634 CBS_pair_21 The CBS do 98.4 1.6E-06 3.5E-11 67.2 9.3 47 119-166 2-48 (143)
188 cd04591 CBS_pair_EriC_assoc_eu 98.4 4.4E-07 9.5E-12 66.6 5.7 47 119-165 3-52 (105)
189 cd04638 CBS_pair_25 The CBS do 98.4 1.4E-06 3.1E-11 63.5 6.9 46 119-164 2-47 (106)
190 KOG0475 Cl- channel CLC-3 and 98.4 6.9E-06 1.5E-10 76.1 12.6 111 54-165 557-693 (696)
191 cd04592 CBS_pair_EriC_assoc_eu 98.3 3.8E-06 8.2E-11 64.5 8.4 49 119-167 2-50 (133)
192 PRK10070 glycine betaine trans 98.3 9E-06 2E-10 73.8 12.1 153 77-268 233-396 (400)
193 cd04625 CBS_pair_12 The CBS do 98.2 4.3E-06 9.3E-11 61.5 7.1 70 26-97 38-110 (112)
194 cd04597 CBS_pair_DRTGG_assoc2 98.2 4.2E-06 9.1E-11 62.3 7.0 53 43-97 58-111 (113)
195 COG4175 ProV ABC-type proline/ 98.2 8E-07 1.7E-11 76.4 3.2 148 2-166 226-382 (386)
196 TIGR01186 proV glycine betaine 98.2 3.1E-05 6.6E-10 69.5 12.7 151 77-266 198-359 (363)
197 smart00116 CBS Domain in cysta 98.1 1.3E-05 2.9E-10 48.8 6.0 46 120-165 2-47 (49)
198 smart00116 CBS Domain in cysta 97.8 7.2E-05 1.6E-09 45.4 6.0 43 55-97 2-45 (49)
199 TIGR03415 ABC_choXWV_ATP choli 97.3 0.0012 2.6E-08 59.7 8.9 105 44-166 275-379 (382)
200 COG4175 ProV ABC-type proline/ 97.2 0.0011 2.4E-08 57.5 7.1 101 60-165 221-331 (386)
201 COG1125 OpuBA ABC-type proline 97.1 0.0062 1.4E-07 51.4 9.9 103 58-165 190-308 (309)
202 KOG2550 IMP dehydrogenase/GMP 97.0 0.00046 1E-08 61.2 3.0 110 118-265 116-228 (503)
203 KOG2118 Predicted membrane pro 96.9 0.0033 7.1E-08 58.7 7.2 125 39-167 200-328 (498)
204 KOG0474 Cl- channel CLC-7 and 96.8 0.0011 2.3E-08 62.0 3.2 58 109-166 581-643 (762)
205 TIGR03415 ABC_choXWV_ATP choli 96.0 0.049 1.1E-06 49.4 9.0 78 77-164 233-318 (382)
206 KOG0475 Cl- channel CLC-3 and 95.3 0.074 1.6E-06 50.1 7.8 49 120-168 558-609 (696)
207 KOG0476 Cl- channel CLC-2 and 94.9 0.23 4.9E-06 48.0 9.8 58 41-101 586-646 (931)
208 cd06409 PB1_MUG70 The MUG70 pr 94.5 0.061 1.3E-06 37.7 3.8 32 236-267 1-33 (86)
209 COG1125 OpuBA ABC-type proline 93.4 0.053 1.2E-06 46.0 2.2 97 1-97 196-306 (309)
210 KOG0476 Cl- channel CLC-2 and 89.2 0.59 1.3E-05 45.3 4.7 66 109-174 587-654 (931)
211 COG0516 GuaB IMP dehydrogenase 84.6 0.3 6.4E-06 39.0 0.0 31 1-36 55-85 (170)
212 TIGR01305 GMP_reduct_1 guanosi 80.4 15 0.00034 32.6 9.0 35 1-40 53-87 (343)
213 PF00478 IMPDH: IMP dehydrogen 73.3 2.1 4.6E-05 38.3 1.8 29 1-34 45-73 (352)
214 PRK11388 DNA-binding transcrip 71.5 17 0.00037 35.3 7.8 89 65-158 62-162 (638)
215 cd02958 UAS UAS family; UAS is 62.3 48 0.001 24.0 6.9 95 61-165 3-106 (114)
216 smart00594 UAS UAS domain. 57.5 38 0.00082 25.0 5.7 94 61-164 13-119 (122)
217 PF05198 IF3_N: Translation in 51.6 8.7 0.00019 26.2 1.2 25 238-266 15-39 (76)
218 PF05198 IF3_N: Translation in 49.7 41 0.00089 22.9 4.3 25 141-165 12-36 (76)
219 PF14827 Cache_3: Sensory doma 46.9 21 0.00046 26.1 2.9 74 72-159 35-109 (116)
220 cd00381 IMPDH IMPDH: The catal 44.5 26 0.00057 31.0 3.5 71 1-81 42-112 (325)
221 PF14044 NETI: NETI protein 41.1 42 0.0009 21.5 3.0 25 57-83 3-27 (57)
222 PRK05096 guanosine 5'-monophos 36.5 53 0.0011 29.3 4.0 35 1-40 54-88 (346)
223 COG3290 CitA Signal transducti 36.2 1.6E+02 0.0035 28.0 7.3 84 62-159 73-158 (537)
224 COG2216 KdpB High-affinity K+ 35.4 61 0.0013 30.8 4.4 36 62-97 413-448 (681)
225 PF13365 Trypsin_2: Trypsin-li 32.2 36 0.00078 24.3 2.1 18 139-156 103-120 (120)
226 PRK06843 inosine 5-monophospha 29.7 24 0.00052 32.3 0.9 31 1-36 50-80 (404)
227 COG2216 KdpB High-affinity K+ 29.6 76 0.0017 30.2 4.0 37 128-165 414-450 (681)
228 PF02743 Cache_1: Cache domain 27.7 76 0.0017 21.2 3.0 17 143-159 18-34 (81)
229 smart00481 POLIIIAc DNA polyme 24.4 1.2E+02 0.0026 19.4 3.3 39 58-96 11-49 (67)
230 PRK10026 arsenate reductase; P 22.8 3.6E+02 0.0077 20.7 8.0 92 55-156 6-107 (141)
231 cd06408 PB1_NoxR The PB1 domai 22.8 1.4E+02 0.0031 20.8 3.5 28 234-266 39-66 (86)
232 cd02991 UAS_ETEA UAS family, E 22.8 3.1E+02 0.0068 20.1 6.0 96 62-167 4-110 (116)
233 PF00944 Peptidase_S3: Alphavi 22.2 81 0.0018 24.2 2.3 18 140-157 106-123 (158)
234 PF03948 Ribosomal_L9_C: Ribos 20.5 78 0.0017 22.1 1.9 22 242-267 23-44 (87)
No 1
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.87 E-value=1.6e-21 Score=178.45 Aligned_cols=151 Identities=24% Similarity=0.302 Sum_probs=139.2
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEE
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAV 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~ 80 (270)
||+++|.+||+++|+.| |++++|+|.-++...+.+.+.++.++|. ++++++.+++|+.+++++|.+++.+.+|
T Consensus 51 mdtvTe~~MAi~~A~~G-----GigvIh~n~~i~~qae~v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~v 123 (475)
T TIGR01303 51 MTAVAGRRMAETVARRG-----GIVILPQDLPIPAVKQTVAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAV 123 (475)
T ss_pred chhhHHHHHHHHHHHCC-----CEEEEeCCCCHHHHHHHHhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEE
Confidence 89999999999999999 9999999977888888888889999998 6889999999999999999999999999
Q ss_pred EEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHH
Q 024256 81 VTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI 160 (270)
Q Consensus 81 Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~ 160 (270)
|+++++++|+||.+|+. . ... ..++.++|+++++++++++++.+|+++|.+++.+.+||+|++|+++|+||.+
T Consensus 124 VvD~gklvGIVT~rDL~-~-----~~~-~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~ 196 (475)
T TIGR01303 124 VILEDRPVGLVTDSDLL-G-----VDR-FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRT 196 (475)
T ss_pred EEECCEEEEEEEHHHhh-c-----CCC-CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence 99988999999999984 2 222 3579999999999999999999999999999999999999889999999999
Q ss_pred HHHHH
Q 024256 161 HITHA 165 (270)
Q Consensus 161 dll~~ 165 (270)
||++.
T Consensus 197 DLl~~ 201 (475)
T TIGR01303 197 GALRA 201 (475)
T ss_pred HHHHH
Confidence 99986
No 2
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.86 E-value=7.4e-21 Score=174.33 Aligned_cols=151 Identities=25% Similarity=0.272 Sum_probs=139.3
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEE
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAV 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~ 80 (270)
|+++++.+|++++++.| |++++|.+...+...+.+.+.+++++|. ++++++++++|+.++++.|.+++++++|
T Consensus 52 Mdtvt~~~MAiaLAr~G-----GiGvih~nl~~~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~ 124 (479)
T PRK07807 52 MTAVAGRRMAETVARRG-----GLVVLPQDIPIDVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVV 124 (479)
T ss_pred CcchhHHHHHHHHHHCC-----CceEeeCCCCHHHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEE
Confidence 89999999999999999 9999999977888878788888999998 7899999999999999999999999999
Q ss_pred EEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeH
Q 024256 81 VTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV 159 (270)
Q Consensus 81 Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~ 159 (270)
|++ +++++|+||.+|+. . ... ..++.++|+++++++++++++.+|++.|.+++.+.+||+|++|+++|+||.
T Consensus 125 VVD~~gklvGIVT~rDL~-~-----~~~-~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~ 197 (479)
T PRK07807 125 VVDEEGRPVGVVTEADCA-G-----VDR-FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTR 197 (479)
T ss_pred EECCCCeEEEEEeHHHHh-c-----Ccc-CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEH
Confidence 998 88999999999994 2 122 357999999999999999999999999999999999999988999999999
Q ss_pred HHHHHH
Q 024256 160 IHITHA 165 (270)
Q Consensus 160 ~dll~~ 165 (270)
+||++.
T Consensus 198 ~DIl~~ 203 (479)
T PRK07807 198 TGALRA 203 (479)
T ss_pred HHHHHH
Confidence 999986
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.84 E-value=2.1e-20 Score=153.08 Aligned_cols=121 Identities=26% Similarity=0.333 Sum_probs=113.9
Q ss_pred CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256 41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120 (270)
Q Consensus 41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~ 120 (270)
.+.+|.++|+ +++.++.+++|+.+|.++|.++++++.||+|+++++|++|..|+. .+++++. .+.+|+++|.+++
T Consensus 170 Pk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~-~aia~g~--~~~kV~~~M~k~v 244 (294)
T COG2524 170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIA-KAIANGN--LDAKVSDYMRKNV 244 (294)
T ss_pred Ccchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHH-HHHHcCC--ccccHHHHhccCC
Confidence 5778999999 789999999999999999999999999999988999999999998 8888773 3579999999999
Q ss_pred eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
+++++|+.+.||+++|..++++++.|+|.+|+++|+||++|+|..+
T Consensus 245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i 290 (294)
T COG2524 245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI 290 (294)
T ss_pred ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence 9999999999999999999999999999999999999999999863
No 4
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.83 E-value=6.6e-20 Score=169.20 Aligned_cols=152 Identities=27% Similarity=0.345 Sum_probs=134.2
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCCC-CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRP-SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA 79 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i 79 (270)
|+.+++.+||+++|+.| |+|++|.+..++...+...+. +.++.|. .+++++++++|+.+++++|.+++++.+
T Consensus 58 M~~vt~~~ma~a~a~~G-----glGvi~~~~~~e~~~~~v~kvk~~e~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~v 130 (495)
T PTZ00314 58 MDTVTEHKMAIAMALMG-----GIGVIHNNCSIEEQVEEVRKVKRFENGFI--MDPYVLSPNHTVADVLEIKEKKGFSSI 130 (495)
T ss_pred ccccccHHHHHHHHHCC-----CeEEecCCCCHHHHHHHHhhccccccccc--cCCeecCCCCCHHHHHHHHHHcCCcEE
Confidence 88999999999999999 999999986666666655343 4778888 688999999999999999999999999
Q ss_pred EEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcE
Q 024256 80 VVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 153 (270)
Q Consensus 80 ~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~ 153 (270)
||+++ ++++|+++.+|+. ... ....+++++|++ ++++++++.++.+++++|.+++.+.+||+|+++++
T Consensus 131 pVvd~~~~~gkLvGIVt~~DL~--~~~----~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~l 204 (495)
T PTZ00314 131 LITVDGKVGGKLLGIVTSRDID--FVK----DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGEL 204 (495)
T ss_pred EEEeCCccCCeEEEEEEHHHHh--hcc----cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcE
Confidence 99984 7999999999994 221 224689999997 88999999999999999999999999999999999
Q ss_pred EEEEeHHHHHHH
Q 024256 154 VDVVDVIHITHA 165 (270)
Q Consensus 154 ~Givt~~dll~~ 165 (270)
+|+||.+||++.
T Consensus 205 iGIIT~~DIl~~ 216 (495)
T PTZ00314 205 VALVSRSDLKKN 216 (495)
T ss_pred EEEEEehHhhhc
Confidence 999999999986
No 5
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.82 E-value=3e-19 Score=154.88 Aligned_cols=206 Identities=16% Similarity=0.203 Sum_probs=152.3
Q ss_pred ChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCC
Q 024256 28 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNL 105 (270)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~ 105 (270)
.....+..+.+. ...+|+++|+|+.+++++++++|+.++++.+.+++++++||++ + ++++|+++.+|++ .......
T Consensus 53 ~e~~~i~~vl~l-~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll-~~~~~~~ 130 (292)
T PRK15094 53 DTRDMLEGVMDI-ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDA 130 (292)
T ss_pred HHHHHHHHHhcc-CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHH-hHhhccC
Confidence 344777777664 5889999999877899999999999999999999999999998 4 7899999999997 5443221
Q ss_pred CCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHH------
Q 024256 106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE------ 179 (270)
Q Consensus 106 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~------ 179 (270)
. ...+.++|.+ ++++++++++.++++.|.+++.+.+||+|+.|.++|+||..||++.++..+.+..+...+
T Consensus 131 ~--~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~ 207 (292)
T PRK15094 131 E--AFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL 207 (292)
T ss_pred C--cCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEe
Confidence 1 2458899965 458999999999999999999999999999999999999999999987665443321110
Q ss_pred -------HHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCe
Q 024256 180 -------AASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM 247 (270)
Q Consensus 180 -------~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l 247 (270)
.+.....++.+.+-.-. +...+.|..+++-...+..|..++...+. .+.|+|.+.+|+-
T Consensus 208 ~~~~~~v~G~~~l~dl~~~l~~~l-~~~~~~Tl~G~i~~~l~~iP~~Gd~i~~~--------~~~f~V~~~~~~r 273 (292)
T PRK15094 208 SRHTWTVRALASIEDFNEAFGTHF-SDEEVDTIGGLVMQAFGHLPARGETIDID--------GYQFKVAMADSRR 273 (292)
T ss_pred CCCeEEEEeccCHHHHHHHhCCCC-CCCCCccHHHHHHHHhCcCCCCCCEEEEC--------CEEEEEEEccCCe
Confidence 11112223333332211 22345788888877777777776654443 3458898876554
No 6
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.81 E-value=7.2e-19 Score=159.37 Aligned_cols=205 Identities=13% Similarity=0.159 Sum_probs=149.8
Q ss_pred ChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCC
Q 024256 28 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNL 105 (270)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~ 105 (270)
.+.++++++.+. ...+++++|+|+.++++++.++++.++++.+.+++++++||++ .++++|+++.+|++ .....
T Consensus 177 ~E~~~i~~vl~l-~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll-~~~~~-- 252 (408)
T TIGR03520 177 EEQKILQGIVSF-GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLL-PHLNK-- 252 (408)
T ss_pred HHHHHHHHHhcc-CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHH-hHhcc--
Confidence 345777777655 4779999999988999999999999999999999999999998 36899999999998 54432
Q ss_pred CCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHH------
Q 024256 106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE------ 179 (270)
Q Consensus 106 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~------ 179 (270)
...++.++|+ ++.++++++++.++++.|++++.+.++|+|+.|..+|+||..||++.++..+.++.+...+
T Consensus 253 --~~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~ 329 (408)
T TIGR03520 253 --KNFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKID 329 (408)
T ss_pred --CCCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeC
Confidence 1246888985 5789999999999999999999999999999999999999999999987655443221110
Q ss_pred ------HHHHHHHHHHHHhhccC----CCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCe
Q 024256 180 ------AASTMMQKFWDSAMALS----PNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM 247 (270)
Q Consensus 180 ------~~~~~~~~~~~~~~~~~----~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l 247 (270)
.......+..+.+-.-. ..++.+.|...++-...+..|+.++...+.. +.|+|.+.+|+-
T Consensus 330 ~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~~~~~~--------~~f~V~~~~~~r 399 (408)
T TIGR03520 330 DNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFEN--------FEFTIEAMDKKR 399 (408)
T ss_pred CCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCEEEECC--------EEEEEEEccCCe
Confidence 01112222222221110 0112346777777666677776666544333 348888876554
No 7
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.81 E-value=3e-19 Score=164.62 Aligned_cols=153 Identities=26% Similarity=0.255 Sum_probs=127.4
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCCCCccccccCC-CceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSA 79 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~-~~~~~v~~~~tv~~a~~~m~~~~~~~i 79 (270)
|+.|++.++|+++++.| |++++|.+-.++...+.. .+|+++|... .+++++++++|+.+|++.|.+++++.+
T Consensus 59 mdtvtgdalAiala~~g-----G~g~Ih~n~sie~qa~lV--~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~v 131 (502)
T PRK07107 59 MQSVSDDNMAIALAREG-----GLSFIFGSQSIESEAAMV--RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTV 131 (502)
T ss_pred HHHHhhHHHHHHHHHcC-----CCeEeeCCCCHHHHHHHH--HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeE
Confidence 67889999999999999 999999774444433221 2455555421 245799999999999999999999999
Q ss_pred EEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcE
Q 024256 80 VVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 153 (270)
Q Consensus 80 ~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~ 153 (270)
||+++ ++++|+||.+|+. +. . ...+.+++++|++ +++++++++++.+|+++|.+++++.+||+|++|++
T Consensus 132 pVVD~~~~~gkLvGIVT~~DLr-~~-~---~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~L 206 (502)
T PRK07107 132 AVTEDGTAHGKLLGIVTSRDYR-IS-R---MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNL 206 (502)
T ss_pred EEEeCCCcCCEEEEEEEcHHhh-cc-c---cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence 99984 7999999999994 32 1 1235689999996 78899999999999999999999999999988999
Q ss_pred EEEEeHHHHHHH
Q 024256 154 VDVVDVIHITHA 165 (270)
Q Consensus 154 ~Givt~~dll~~ 165 (270)
+|+||.+|+++.
T Consensus 207 vGIIT~~Dilk~ 218 (502)
T PRK07107 207 VYLVFRKDYDSH 218 (502)
T ss_pred EEEEEhHHHHhc
Confidence 999999999986
No 8
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.79 E-value=2.6e-18 Score=157.61 Aligned_cols=152 Identities=31% Similarity=0.357 Sum_probs=130.9
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh-CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM-FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA 79 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i 79 (270)
|+.+++.++++++++.| |+|++|+|..++.-.+.+ .-.+.++.|. ++++++++++|+.+++++|.+++++.+
T Consensus 42 mdtvTe~ema~~ma~~g-----g~GvI~~n~~~e~q~~~V~~Vk~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~l 114 (450)
T TIGR01302 42 MDTVTESRMAIAMAREG-----GIGVIHRNMSIEEQAEQVKRVKRAENGII--SDPVTISPETTVADVLELMERKGISGI 114 (450)
T ss_pred CCccCHHHHHHHHHhcC-----CCceeecCCCHHHHHHHHhhhccccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEE
Confidence 88899999999999999 999999863343332222 2336788888 689999999999999999999999999
Q ss_pred EEEe-C---CEEEEEeeHHHHHHHHHhcCCCCCccchhhccC-CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEE
Q 024256 80 VVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 154 (270)
Q Consensus 80 ~Vv~-~---~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~ 154 (270)
||++ + ++++|+++.+|++ ... . ...++.++|+ .+++++++++++.++++.|.+++.+.+||+|++|+++
T Consensus 115 pVvd~~~~~~~lvGIVt~rDL~-~~~----~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lv 188 (450)
T TIGR01302 115 PVVEDGDMTGKLVGIITKRDIR-FVK----D-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELV 188 (450)
T ss_pred EEEeCCCCCCeEEEEEEHHHHh-hhh----c-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEE
Confidence 9999 5 6999999999996 321 1 2468999998 4899999999999999999999999999999999999
Q ss_pred EEEeHHHHHHH
Q 024256 155 DVVDVIHITHA 165 (270)
Q Consensus 155 Givt~~dll~~ 165 (270)
|+||.+||++.
T Consensus 189 GiVT~~DIl~~ 199 (450)
T TIGR01302 189 GLITMKDIVKR 199 (450)
T ss_pred EEEEhHHhhhc
Confidence 99999999987
No 9
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.79 E-value=4.3e-18 Score=129.83 Aligned_cols=118 Identities=24% Similarity=0.280 Sum_probs=104.3
Q ss_pred CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCee
Q 024256 43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC 122 (270)
Q Consensus 43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~ 122 (270)
.+...+|+ ++++.++|++++.+++.+|.+++++.+||+++++++|-||..++.+..+....+.....++++|..++++
T Consensus 65 ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~ 142 (187)
T COG3620 65 ITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPT 142 (187)
T ss_pred EeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCc
Confidence 46789999 8999999999999999999999999999999999999999999984444433555568999999999999
Q ss_pred ecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 123 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 123 v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++++.++..+.+++..++ .+.|+ ++|+++||||+.|+++.
T Consensus 143 Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~ 182 (187)
T COG3620 143 VSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKL 182 (187)
T ss_pred CCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHH
Confidence 999999999999888754 67777 58999999999999986
No 10
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.78 E-value=6.7e-18 Score=156.01 Aligned_cols=151 Identities=28% Similarity=0.276 Sum_probs=126.7
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHH---hhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCc
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRE---RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS 77 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~ 77 (270)
|+.+++..+++++++.| |+|+++.+...+...+ ... .....|. ++++++++++|+.+++++|.+++++
T Consensus 62 M~~vt~~~lA~Ama~aG-----GiGfI~~~as~E~q~~~Irkvk--~~~~gmi--~dpvtV~pd~tV~dA~~lm~~~~~~ 132 (505)
T PLN02274 62 MDTVTESDMAIAMAALG-----GIGIVHYNNTAEEQAAIVRKAK--SRRVGFV--SDPVVKSPSSTISSLDELKASRGFS 132 (505)
T ss_pred CcccchHHHHHHHHhCC-----CeEEEcCCCCHHHHHHHHHHhh--ccccccc--CCCeeeCCCCcHHHHHHHHHhcCCc
Confidence 78899999999999999 9988886522232222 222 2344466 6899999999999999999999999
Q ss_pred EEEEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC--CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC
Q 024256 78 SAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PECATIDTPIVDALHIMHDGKFLHLPVVDRDG 151 (270)
Q Consensus 78 ~i~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g 151 (270)
.+||+++ ++++|+||.+|+. ... ..+.++.++|+++ ++++++++++.+|+++|.+++.+.+||+|+++
T Consensus 133 ~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g 206 (505)
T PLN02274 133 SVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDG 206 (505)
T ss_pred eEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC
Confidence 9999984 7999999999994 321 2356899999976 78999999999999999999999999999889
Q ss_pred cEEEEEeHHHHHHHH
Q 024256 152 DVVDVVDVIHITHAA 166 (270)
Q Consensus 152 ~~~Givt~~dll~~~ 166 (270)
+++|+||++||++..
T Consensus 207 ~LvGvITr~DIlk~~ 221 (505)
T PLN02274 207 ELVDLVTRTDVKRVK 221 (505)
T ss_pred eEEEEEEHHHHHHHh
Confidence 999999999999873
No 11
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.76 E-value=1.9e-17 Score=153.38 Aligned_cols=153 Identities=29% Similarity=0.337 Sum_probs=131.3
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh-CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM-FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA 79 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i 79 (270)
|+..++.++++++++.| |+|++|.+...+...+.+ .-..++++|. ++++++++++|+.++++.|.+++++.+
T Consensus 49 m~~vT~~ela~ava~~G-----glG~i~~~~~~e~~~~~I~~vk~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~l 121 (486)
T PRK05567 49 MDTVTEARMAIAMAREG-----GIGVIHKNMSIEEQAEEVRKVKRSESGVV--TDPVTVTPDTTLAEALALMARYGISGV 121 (486)
T ss_pred CCCcCHHHHHHHHHhCC-----CCCEecCCCCHHHHHHHHHHhhhhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEE
Confidence 78889999999999999 999999653333333322 2235788998 789999999999999999999999999
Q ss_pred EEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccC-CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEE
Q 024256 80 VVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157 (270)
Q Consensus 80 ~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Giv 157 (270)
||++ +++++|+++.+|+. ... . ...++.++|+ ++++++++++++.++++.|.+++.+.+||+|++|+++|+|
T Consensus 122 pVvd~~g~lvGiVt~~DL~-~~~----~-~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI 195 (486)
T PRK05567 122 PVVDENGKLVGIITNRDVR-FET----D-LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195 (486)
T ss_pred EEEccCCEEEEEEEHHHhh-hcc----c-CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence 9999 89999999999995 321 1 2358999998 6889999999999999999999999999999999999999
Q ss_pred eHHHHHHHH
Q 024256 158 DVIHITHAA 166 (270)
Q Consensus 158 t~~dll~~~ 166 (270)
|.+||++..
T Consensus 196 T~~DLl~~~ 204 (486)
T PRK05567 196 TVKDIEKAE 204 (486)
T ss_pred EhHHhhhhh
Confidence 999999863
No 12
>PRK11573 hypothetical protein; Provisional
Probab=99.75 E-value=4.6e-17 Score=147.64 Aligned_cols=205 Identities=12% Similarity=0.109 Sum_probs=150.2
Q ss_pred hHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCC
Q 024256 30 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPA 107 (270)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~~ 107 (270)
.+++.++.+. ...+++++|+|+.++++++.++++.++++.+.+++++++||++ .+.++|+++.+|++ .....+...
T Consensus 175 ~~mi~~vl~l-~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll-~~~~~~~~~ 252 (413)
T PRK11573 175 QDMLLSVLDL-EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEF 252 (413)
T ss_pred HHHHHHHhcc-CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHH-HHhhccCcC
Confidence 3677777655 5789999999999999999999999999999999999999998 37899999999998 544332221
Q ss_pred CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChH-H-------
Q 024256 108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN-E------- 179 (270)
Q Consensus 108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~-~------- 179 (270)
....+.+++ +++.+|++++++.++++.|++++.+.+.|+|+.|...|+||..||++.++..+.++.+... .
T Consensus 253 ~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~ 331 (413)
T PRK11573 253 TKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQND 331 (413)
T ss_pred CHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecC
Confidence 223455666 4778999999999999999999999999999999999999999999998876654432210 0
Q ss_pred -----HHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCC
Q 024256 180 -----AASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL 246 (270)
Q Consensus 180 -----~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~ 246 (270)
.+....++..+.+-.-. +++.+.|..+++-...+..|+.++...+.. +.|+|.+.+|+
T Consensus 332 ~~~~v~G~~~l~d~~~~l~~~l-~~~~~~Tl~G~i~~~lg~iP~~Ge~~~~~~--------~~f~V~~~~~~ 394 (413)
T PRK11573 332 GSVIIDGTANVREINKAFNWHL-PEDDARTVNGVILEALEEIPVAGTRVRIGE--------YDIDILDVQDN 394 (413)
T ss_pred CEEEEEeeeEHHHHHHHhCCCC-CCCCCeeHHHHHHHHhCcCCCCCCEEEECC--------EEEEEEEecCC
Confidence 01112222223322211 123457777777777777777666544443 45888886544
No 13
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.74 E-value=8.5e-17 Score=120.30 Aligned_cols=109 Identities=24% Similarity=0.308 Sum_probs=97.0
Q ss_pred eeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc-CCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 55 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 55 ~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~-~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
+.++++++++.+|++.|.+++...+||++ +|+++|+++..|+. +.... .......++.++|..++.++++++++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 81 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVV-RQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV 81 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHH-HHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHH
Confidence 67899999999999999999999999998 88999999999997 55543 22233468999999999999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++.+++||+|++|+++|+|+.+|+++
T Consensus 82 ~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 82 WQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999999998899999999999874
No 14
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.73 E-value=1.7e-16 Score=118.60 Aligned_cols=110 Identities=28% Similarity=0.343 Sum_probs=96.5
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 131 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 131 (270)
+++++.+++++.++++.|.+++.+.+||++ + ++++|+++.+|+++.+..........++.++|..++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 578999999999999999999999999998 5 89999999999983344433333346799999889999999999999
Q ss_pred HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus 82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 999999999999999996 99999999999975
No 15
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.72 E-value=7.8e-17 Score=142.62 Aligned_cols=123 Identities=22% Similarity=0.279 Sum_probs=107.9
Q ss_pred CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC
Q 024256 41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 119 (270)
Q Consensus 41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~ 119 (270)
...+|+++|++.++++++++++|+.+|++.|.+++.+.+||++ +|+++|++|.+|+. +....+......++.++|+++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence 3447999999323899999999999999999998888888888 89999999999996 666554344456899999999
Q ss_pred CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+.++.+++++.+|++.|.+++.+++||++ +|+++|+||..|++++
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 99999999999999999999999999998 6899999999999975
No 16
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.72 E-value=1.5e-16 Score=118.38 Aligned_cols=108 Identities=23% Similarity=0.268 Sum_probs=94.9
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
++.++++++++.+|++.|.+++.+.+||++ +|+++|+++..|+. +.... .....++.++|..++.++++++++.+|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~a 78 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDL 78 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHH
Confidence 367899999999999999989999999998 78999999999996 43211 112357999998889999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998899999999999975
No 17
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.72 E-value=1.1e-16 Score=133.69 Aligned_cols=128 Identities=26% Similarity=0.316 Sum_probs=111.6
Q ss_pred hhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHH----HhcCCCCCccchh
Q 024256 39 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV----ISQNLPADSTLVE 113 (270)
Q Consensus 39 ~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~----~~~~~~~~~~~v~ 113 (270)
.+..-+..+||+ ++++++++++|+.+|.++|.++++..+||+| +.+++|+|+.+|+...+ .++-......+++
T Consensus 241 ~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk 318 (382)
T COG3448 241 RMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVK 318 (382)
T ss_pred HhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCccc
Confidence 445668899999 8999999999999999999999999999999 78999999999998311 1111122346899
Q ss_pred hccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256 114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 168 (270)
Q Consensus 114 ~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 168 (270)
.+|++++.++.++++..+++..|.+.+.+++||+|++|+++||||.+|++.++..
T Consensus 319 ~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 319 GIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred ccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987543
No 18
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.72 E-value=3.4e-16 Score=143.07 Aligned_cols=206 Identities=17% Similarity=0.175 Sum_probs=154.7
Q ss_pred ChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCC
Q 024256 28 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNL 105 (270)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~ 105 (270)
.++.+++++.+. ...+++++|+|++++.+++.+.++.++.+.+.+++++++||++ .+.++|+++.+|++ .....+.
T Consensus 192 ~E~~mi~~v~~l-~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll-~~~~~~~ 269 (429)
T COG1253 192 EEREMINNVLDL-DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLL-RALLDGQ 269 (429)
T ss_pred HHHHHHHHHhcc-CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHH-HHHhcCc
Confidence 344778887654 5788999999999999999999999999999999999999998 57899999999999 5444332
Q ss_pred CCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHH------
Q 024256 106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE------ 179 (270)
Q Consensus 106 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~------ 179 (270)
. .......+ .+++++++++++.++++.|++.+.+.+.|+|+.|.+.|+||..|+++.++..+.++.+...+
T Consensus 270 ~--~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~ 346 (429)
T COG1253 270 S--DLDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQR 346 (429)
T ss_pred c--ccchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEe
Confidence 1 11222233 28889999999999999999999999999999999999999999999988765544432110
Q ss_pred -------HHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCC
Q 024256 180 -------AASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL 246 (270)
Q Consensus 180 -------~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~ 246 (270)
.......+..+.+-.-.+.+..+.|...++....++.|..++...++... |+|+|.+|+
T Consensus 347 ~~~~~~v~G~~~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~g~~~~~~~~~--------~~V~~~~~~ 412 (429)
T COG1253 347 DDDGWLVDGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLR--------FEVLDMDGR 412 (429)
T ss_pred cCCcEEEeccccHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCCCCEEEEcCCe--------EEEEEccCC
Confidence 11112233333332211333346899999888888888877776666666 888886543
No 19
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.71 E-value=3.7e-16 Score=116.82 Aligned_cols=110 Identities=27% Similarity=0.397 Sum_probs=97.4
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
+++++.+++++.++++.|.+.+.+.+||++ +|+++|+++.+|+. +...+.......++.++|.+++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-RALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHH-HHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence 467899999999999999999999999999 79999999999997 6555443333456899999999999999999999
Q ss_pred HHHhHhCCCCEEEEEeCC--CcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~--g~~~Givt~~dll~ 164 (270)
++.|.+++..++||+|++ |+++|+||.+|+++
T Consensus 81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 999999999999999977 79999999999985
No 20
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.71 E-value=3.6e-16 Score=117.65 Aligned_cols=110 Identities=20% Similarity=0.254 Sum_probs=95.5
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV 130 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~ 130 (270)
++.++++++++.+|++.|.+++.+++||++ +++++|+++..|+. +...........++.++|.+ ++.++++++++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLL-KASIGGADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-HHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 468899999999999999999999999999 68999999999997 55443333334678899974 688999999999
Q ss_pred HHHHHhHhCCCCEEEEEeCC---CcEEEEEeHHHHHH
Q 024256 131 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH 164 (270)
Q Consensus 131 ~a~~~~~~~~~~~lpVvd~~---g~~~Givt~~dll~ 164 (270)
++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 99999999999999999976 69999999999874
No 21
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.71 E-value=4.5e-16 Score=117.36 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=92.2
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC-CCccchh------hccCCCCeeecC
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-ADSTLVE------KVMTPNPECATI 125 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~-~~~~~v~------~im~~~~~~v~~ 125 (270)
++.++++++++.+|++.|.+++.+.+||++ +|+++|+++.+|++ ++...+.. ....++. .+|..++.++++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVI-NLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP 80 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHH-HHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence 578999999999999999999999999998 89999999999997 55433211 1112233 344456789999
Q ss_pred CCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 126 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 126 ~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999985
No 22
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.70 E-value=2.1e-16 Score=139.61 Aligned_cols=122 Identities=19% Similarity=0.275 Sum_probs=107.5
Q ss_pred CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256 42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120 (270)
Q Consensus 42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~ 120 (270)
..+|+++|.+..+++++++++|+.+|++.|.+++...+||++ +|+++|+|+..|+. +.+..+... ..++.++|++++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence 457999999322299999999999999999988889999999 89999999999996 655443322 457999999999
Q ss_pred eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
.++.+++++.+|++.|.+++..++||+|++|+++|+||..|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999999988999999999999975
No 23
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.70 E-value=2.9e-16 Score=114.58 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=84.8
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 131 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 131 (270)
+++++++++|+.+|.+.|.+++++++||++ + |+++|++|..|+. +... +.++++++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~-~~~~-----------------~~~v~~~~~l~~ 63 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI-LILR-----------------LVSIHPERSLFD 63 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh-hhee-----------------eEEeCCCCcHHH
Confidence 478999999999999999999999999998 4 7999999999996 3221 778999999999
Q ss_pred HHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHH
Q 024256 132 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 164 (270)
Q Consensus 132 a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~ 164 (270)
|++.|.+++.+++||+|++ |+++|++|.+|++.
T Consensus 64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 9999999999999999987 89999999999975
No 24
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.69 E-value=7.3e-16 Score=115.12 Aligned_cols=110 Identities=25% Similarity=0.345 Sum_probs=95.1
Q ss_pred ceeEECCCCCHHHHHHHHHHCC-CcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCC--CCHH
Q 024256 54 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV 130 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~-~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~--~~l~ 130 (270)
+++++++++++.++++.|.+++ ...+||+++|+++|+++..|++ +...........++.++|.+++.+++++ +++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHH-HHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 4678999999999999998888 6778888888999999999997 6655433333467999998888889887 6899
Q ss_pred HHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 131 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 131 ~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999998899999999999985
No 25
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.69 E-value=8.2e-16 Score=114.31 Aligned_cols=111 Identities=58% Similarity=0.840 Sum_probs=96.7
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+++++.+++++.++++.|.+++.+.+||+++++++|+++..|++++....+......++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL 81 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence 57889999999999999998889999999889999999999997444433322222579999988999999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.|.+++.+++||++++|+++|+||..|++.
T Consensus 82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 9999999999999998899999999999874
No 26
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.69 E-value=6.2e-16 Score=117.01 Aligned_cols=111 Identities=27% Similarity=0.417 Sum_probs=97.8
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC----------CCccchhhccCCCCe
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE 121 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~~im~~~~~ 121 (270)
++++++++++++.++.+.|.+++++++||++ +|+++|+++..+++ +....... ....++.++|.+++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLL-RHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHH-hhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 5688999999999999999999999999998 69999999999997 55433221 123478999999999
Q ss_pred eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++++++.++++.|.+.+.+.+||+|++|+++|+||..|++.
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999998899999999999985
No 27
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.69 E-value=1.5e-15 Score=112.41 Aligned_cols=109 Identities=31% Similarity=0.481 Sum_probs=97.3
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+++++++++++.++++.|.+.+.+.+||+++++++|+++.+|++ +....... ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l 79 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR 79 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHH-HHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence 47789999999999999999889999999989999999999997 55544332 34689999998999999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 9999999999999998899999999999975
No 28
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.69 E-value=2.6e-16 Score=119.73 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=95.7
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 131 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 131 (270)
++++++++++|+.++++.|.+++.+++||++ +++++|+++..+++ +....+....+.++.++|++++.++.+++++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~-~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLL-SSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-HHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 4588999999999999999999999999998 78999999999998 444433333357999999999999999999999
Q ss_pred HHHHhH---------hCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 132 ALHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 132 a~~~~~---------~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+.+++. +.+...+||++++|+++|+||.+|++++
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 999653 2356778899988999999999999975
No 29
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=1.2e-15 Score=113.29 Aligned_cols=109 Identities=33% Similarity=0.481 Sum_probs=95.7
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-CCCccchhhccCCCCeeecCCCCHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTLVEKVMTPNPECATIDTPIVD 131 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~-~~~~~~v~~im~~~~~~v~~~~~l~~ 131 (270)
++.++++++++.++.+.|.+++++.+||++ +++++|+++.++++ +.+.... .....++.++|.+++.++++++++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 80 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIV-RKVALRGASALDTPVSEIMTRNVITVTPDDTVDE 80 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHH-HHHhhcCCCccccCHHHhcCCCcEEECCCCcHHH
Confidence 577899999999999999999999999998 69999999999998 5544322 22245799999889999999999999
Q ss_pred HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+++.|.+.+.+++||+++ |+++|+||..|+++
T Consensus 81 ~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 81 AMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 999999999999999996 99999999999975
No 30
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.68 E-value=8.6e-16 Score=114.19 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=98.2
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
+++++++++++.++++.|.+.+++.+||++ +|+++|+++..++. ++..+.......++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 80 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA 80 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence 578899999999999999999999999999 68999999999997 6665443333368999999999999999999999
Q ss_pred HHHhHhCCCCEEEEEeC-CCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~-~g~~~Givt~~dll~ 164 (270)
++.|.+.+.+.+||+++ +|+++|+++..|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999997 789999999999875
No 31
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=1.5e-15 Score=113.11 Aligned_cols=109 Identities=27% Similarity=0.412 Sum_probs=96.7
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
.+.++++++++.++++.|.+.+...+||++ +|+++|+++..|+. +.+.+.... ..++.++|.+++.++++++++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIR-RALLKGLSL-DDPVSEVMNRNPITAKVGSSREEI 80 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHH-HHHhcCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence 367899999999999999999999999998 78999999999997 555444333 357999999889999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++.+++||+|++|+++|+||.+|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999999998899999999999874
No 32
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.68 E-value=2e-15 Score=112.22 Aligned_cols=111 Identities=32% Similarity=0.478 Sum_probs=97.3
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+++++++++++.+|++.|.+.+.+++||+++|+++|+++..+++.+....+......++.++|.+.+.++.+++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 81 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence 57889999999999999999999999999999999999999986344444443333359999998999999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.|...+.+++||++++|+++|+++..|+++
T Consensus 82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999999997799999999999975
No 33
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.68 E-value=1.3e-15 Score=113.37 Aligned_cols=109 Identities=20% Similarity=0.225 Sum_probs=95.8
Q ss_pred eeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 55 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 55 ~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+..+.+++++.++++.|.+.+.+.+||++ +++++|+++.+|+. +...........++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVL-SYALESEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHH-HhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 67889999999999999999999999998 78999999999997 54333322234679999988999999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999998899999999999974
No 34
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=1.2e-15 Score=115.58 Aligned_cols=110 Identities=32% Similarity=0.388 Sum_probs=96.6
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCC-----------CccchhhccCCCC
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP 120 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~-----------~~~~v~~im~~~~ 120 (270)
+++++++++++.++++.|.+.+.+.+||++ + |+++|+++..+++ +++...... ...++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDIL-KYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHH-HHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 578899999999999999999999999998 5 8999999999997 655433211 1347889998899
Q ss_pred eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
.++++++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999997799999999999986
No 35
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.67 E-value=1.2e-15 Score=113.60 Aligned_cols=111 Identities=28% Similarity=0.390 Sum_probs=98.6
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 131 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 131 (270)
.+++++++++++.++++.|.+.+.+.+||++ +|+++|+++..++. +.+.........++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 3578899999999999999888889999998 78999999999997 666554443345799999999999999999999
Q ss_pred HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+++.|.+++.+.+||++++|+++|+|+..||++
T Consensus 81 ~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999998899999999999975
No 36
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.67 E-value=2.7e-15 Score=111.01 Aligned_cols=108 Identities=26% Similarity=0.341 Sum_probs=96.5
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+++++++++++.++++.|.+.+++++||+++++++|+++..+++ +....+.. ..++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIA-HAIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence 57889999999999999999999999999889999999999997 65544322 2578999988999999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.|.+.+.+++||++++|+++|+|+..|+++
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999999999998899999999999975
No 37
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=1.3e-15 Score=113.71 Aligned_cols=108 Identities=27% Similarity=0.285 Sum_probs=93.5
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCC-----ccchhhccCCCCeeecCCC
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD-----STLVEKVMTPNPECATIDT 127 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~-----~~~v~~im~~~~~~v~~~~ 127 (270)
+++++++++++.++++.|.+++.+.+||++ +|+++|+++.++++ +......... ..++.++|.+++.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 80 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA 80 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHH-HHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence 578999999999999999999999999999 78999999999997 5554322111 3579999998999999999
Q ss_pred CHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 128 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 128 ~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.++++.|.+.+ .+||+|++|+++|++|..|+++
T Consensus 81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 9999999998754 6999998899999999999985
No 38
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=2.9e-15 Score=110.98 Aligned_cols=108 Identities=23% Similarity=0.381 Sum_probs=97.0
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
+++++++++.++.++.+.|.+.+.+++||+++|+++|+++..|+. +...... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~ 78 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV 78 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence 467899999999999999998899999999889999999999997 5554332 3468999999999999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++.+.+||++ +|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 9999999999999999 899999999999975
No 39
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=2.8e-15 Score=111.34 Aligned_cols=109 Identities=30% Similarity=0.511 Sum_probs=97.1
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
++.++++++++.++++.|.+.+.+++||++ +++++|+++..+++ +.+..+... ..++.++|.+++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGIDL-DTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHH-HHHhccCCC-ccCHHHhccCCCEEECCCCcHHHH
Confidence 467899999999999999999999999999 79999999999997 655544333 457899998999999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++...+||++++|+++|++|..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999998899999999999975
No 40
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=1.6e-15 Score=112.53 Aligned_cols=108 Identities=24% Similarity=0.342 Sum_probs=96.1
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
++.++++++++.++++.|.+.+.+.+||++ +|+++|+++..++. +.+.... ...++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~ 78 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLI-RALAEGG--PDAPVRGVMRRDFPTVSPSATLDAV 78 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHH-HHHHhcC--CCCcHHHHhcCCCcEECCCCcHHHH
Confidence 477899999999999999988899999999 69999999999997 6554332 2357999998899999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++..++||+|++|+++|++|..|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999997799999999999975
No 41
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.67 E-value=3.3e-15 Score=110.78 Aligned_cols=109 Identities=35% Similarity=0.490 Sum_probs=95.6
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+++++++++++.++.+.|.+++.+.+||+++++++|+++..++++.+...+.. ...++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 57889999999999999999889999999989999999999997333333222 23579999988999999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.|.+.+.+++||+++ |+++|++|.+|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 9999999999999996 99999999999974
No 42
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.66 E-value=3.5e-15 Score=110.66 Aligned_cols=109 Identities=20% Similarity=0.231 Sum_probs=95.7
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+++++++++++.++++.|.+++...++|++++++.|+++..++. +....+......++.++|.+++..+++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLL-DAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHH-HHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 46789999999999999999899999999878999999999997 55543322234679999998999999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~ 110 (111)
T cd04589 81 LLMTRHRIHRVVVRE-GGEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHhCccEEEEee-CCEEEEEEEhHHhhc
Confidence 999999999999998 489999999999975
No 43
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=3.9e-15 Score=110.54 Aligned_cols=109 Identities=27% Similarity=0.419 Sum_probs=94.1
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcC-CCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~-~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
+++++++++++.++++.|.+++...++|.++|+++|+++..|++ +..... ......++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 80 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVL-QAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV 80 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHH-HHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence 57889999999999999988888888777789999999999997 554432 2222457999998888999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++...+||++ +|+++|++|.+|+++
T Consensus 81 ~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 81 RRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999998 689999999999985
No 44
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=1.7e-15 Score=115.21 Aligned_cols=110 Identities=22% Similarity=0.208 Sum_probs=92.7
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCc-------------cchhhccCCC
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-------------TLVEKVMTPN 119 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~-------------~~v~~im~~~ 119 (270)
+++++++++++.++++.|.+++++.+||++ +|+++|+++..|++ +.......... ....+.|..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLK-GLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhh-hhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence 578899999999999999999999999998 78999999999997 55433221111 1123467778
Q ss_pred CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 899999999999999999999999999998899999999999975
No 45
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.66 E-value=4.4e-15 Score=109.88 Aligned_cols=107 Identities=33% Similarity=0.395 Sum_probs=95.7
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 131 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 131 (270)
++++++++++++.++++.|.+++.+.+||++ +|+++|+++..+++ +...... .++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~----~~~~~~~~~~~~~v~~~~~l~~ 76 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-KAVARDK----KSVEDIMTRNVITATPDEPIDV 76 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHH-HHHhhCc----cCHHHhcCCCCeEECCCCcHHH
Confidence 4688999999999999999999999999999 78999999999997 5544321 3588999889999999999999
Q ss_pred HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+++.|.+++...+||++++|+++|+||..|+++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 77 AARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999998899999999999964
No 46
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.66 E-value=5.5e-16 Score=139.89 Aligned_cols=122 Identities=26% Similarity=0.357 Sum_probs=112.7
Q ss_pred hCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC
Q 024256 40 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 118 (270)
Q Consensus 40 ~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~ 118 (270)
+..+++.++++ .+++++++.+|+.+|...|.+.|.+.+.+++ ++...||+|.+|+..+.+.++.+. ..+|+++||.
T Consensus 146 ~~~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~ 222 (610)
T COG2905 146 FILTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTS 222 (610)
T ss_pred HHHHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhcc
Confidence 34667899999 7899999999999999999999999888888 899999999999997777777665 5899999999
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++++..++.+.+|+-.|.+++++++||++ +|+++|+||..||++.
T Consensus 223 p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l 268 (610)
T COG2905 223 PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRL 268 (610)
T ss_pred CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHh
Confidence 999999999999999999999999999997 8999999999999987
No 47
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.66 E-value=3.9e-15 Score=110.33 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=93.7
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 131 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 131 (270)
++.++++++++.++++.|.+.+.+.+||++ + |+++|+++..+++ +....... ..++.++| .++.++++++++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~ 77 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLL-RALAEGEE--DLDLRDLL-RPPLFVPESTPLDD 77 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHH-HHHHcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence 578999999999999999998999999998 6 8999999999997 66554332 14577777 46788999999999
Q ss_pred HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999998899999999999874
No 48
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=5.3e-15 Score=109.79 Aligned_cols=110 Identities=30% Similarity=0.459 Sum_probs=94.7
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+++++++++++.++++.|.+.+.+.+||+++++++|+++..|+++............++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 81 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA 81 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence 46789999999999999999999999999977999999999998333333222234679999988899999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.|.+++.+.+||+|++ +++|+|+.+|+++
T Consensus 82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999999999965 9999999999975
No 49
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=3e-15 Score=115.59 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=95.3
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCC-----------------------Cc
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-----------------------DS 109 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~-----------------------~~ 109 (270)
+++++++++++.+|++.|.+.+.+.+||++ +|+++|+++..|++ +........ ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLA-FAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHH-HHhhcccccccchhhhhhhhhccccccccccccc
Confidence 477899999999999999999999999999 79999999999998 554322111 13
Q ss_pred cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
.++.++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4799999989999999999999999999999999999996 99999999999985
No 50
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2.5e-15 Score=113.31 Aligned_cols=110 Identities=33% Similarity=0.428 Sum_probs=96.6
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC---------CCccchhhccCCCCeee
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECA 123 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~---------~~~~~v~~im~~~~~~v 123 (270)
+++++.+++++.++.+.|.+.+++.+||++ +|+++|+++..+++ +....... ....++.++|..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 80 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL-RAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHH-HHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence 478899999999999999999999999999 69999999999997 55443221 12457899998899999
Q ss_pred cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999998799999999999985
No 51
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2.7e-15 Score=113.59 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=91.4
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCC---------CccchhhccCCCCee
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA---------DSTLVEKVMTPNPEC 122 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~---------~~~~v~~im~~~~~~ 122 (270)
++.++++++++.+|++.|.+++++++||++ + |+++|+++..|++ +++..+... ....+.++|.+++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLV-EFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHH-HHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 478899999999999999998999999999 5 8999999999997 544322110 001223578888999
Q ss_pred ecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHH
Q 024256 123 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 163 (270)
Q Consensus 123 v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll 163 (270)
+++++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 99999999999999999999999999889999999999974
No 52
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.65 E-value=3.1e-16 Score=136.19 Aligned_cols=151 Identities=30% Similarity=0.351 Sum_probs=127.8
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh--CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcE
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM--FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 78 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~ 78 (270)
|++++|.+||+++|+-| ||+++|.|.-.+.-.... .+..-..+++ ++++++|+.++.++++....++++.
T Consensus 70 MDTVtes~MAiaMAl~g-----gIg~IHhNctpe~QA~~v~~vK~~~~g~~~---~p~v~sp~~tvg~v~~~k~~~gF~g 141 (503)
T KOG2550|consen 70 MDTVTESEMAIAMALLG-----GIGFIHHNCTPEDQADMVRRVKNYENGFIN---NPIVISPTTTVGEVKEAKEKHGFSG 141 (503)
T ss_pred CcccchhHHHHHHHhcC-----CceeeecCCCHHHHHHHHHHHHHhhccccc---CCcccCCcccchhhhhhcccccccc
Confidence 89999999999999999 999999984333322221 2222333443 5889999999999999999999999
Q ss_pred EEEEe----CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEE
Q 024256 79 AVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 154 (270)
Q Consensus 79 i~Vv~----~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~ 154 (270)
+||.+ ..+++|+||.+|+ .++.+ ....+.++|++.+++.+.+.++.++-+++++.+...+||||++|+++
T Consensus 142 ~pvTe~g~~~~KLvG~vtsrdi--~f~~~----~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelv 215 (503)
T KOG2550|consen 142 IPVTEDGKRGSKLVGIITSRDI--QFLED----NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELV 215 (503)
T ss_pred cccccCCcccceeEEEEehhhh--hhhhc----ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCcee
Confidence 99996 4789999999999 55522 35789999999989999999999999999999999999999999999
Q ss_pred EEEeHHHHHHH
Q 024256 155 DVVDVIHITHA 165 (270)
Q Consensus 155 Givt~~dll~~ 165 (270)
.+|++.||.+.
T Consensus 216 a~~~rtDl~k~ 226 (503)
T KOG2550|consen 216 AMLSRTDLMKN 226 (503)
T ss_pred eeeehhhhhhh
Confidence 99999999986
No 53
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.65 E-value=1.8e-15 Score=112.90 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=92.5
Q ss_pred ceeEECCCCCHHHHHHHHHHCC-CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCH
Q 024256 54 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI 129 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~-~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l 129 (270)
+++++++++++.+|++.|.+++ .+.+||++ +|+++|+++..|++ +...... ...++.++|.+ +++++.+++++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l 78 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLR-AIPTSQW--AQTTVIQVMTPAAKLVTVLSEESL 78 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHH-HHHHhhc--cccchhhhhcccccceEECCCCcH
Confidence 5788999999999999997765 88999998 78999999999997 5443221 23578899975 36789999999
Q ss_pred HHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 130 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 130 ~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
.++++.|.+++.+++||+|++|+++|++|.+|+++
T Consensus 79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 99999999999999999997799999999999874
No 54
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.65 E-value=3.5e-15 Score=109.68 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=92.7
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
+++++++++++.+|++.|.+++.+.+||++ +|+++|+++..|+. +.. ..++.++|.+.+..+.+++++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAA-RAS-------GGCCGDHAEPFKVTVSVDDDLRIV 73 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHH-Hhc-------ccchhhhcccCCEEECCCCCHHHH
Confidence 578899999999999999998999999998 79999999999996 431 135789998888889999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++.+.+||+|++|+++|+|+.+|++.
T Consensus 74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 55
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=3.7e-15 Score=110.57 Aligned_cols=108 Identities=25% Similarity=0.293 Sum_probs=95.3
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
+++++++++++.++++.|.+++.+.+||++ +|+++|+++..|++ ++...... ...++.++|.+++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 578899999999999999999999999998 79999999999997 55433222 2357899999999999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++.+.+||+|+ |+++|+||..|++.
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999997 99999999999874
No 56
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=2.9e-15 Score=114.92 Aligned_cols=109 Identities=28% Similarity=0.356 Sum_probs=95.4
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCc--------------------cch
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV 112 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~--------------------~~v 112 (270)
+++++.+++++.++++.|.+.+++++||++ +++++|+++..++. ++......... .++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI-RKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHH-HHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 478899999999999999998999999999 78999999999997 55543322211 178
Q ss_pred hhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 113 ~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 8999889999999999999999999999999999997 99999999999985
No 57
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.65 E-value=4.6e-15 Score=109.65 Aligned_cols=105 Identities=30% Similarity=0.291 Sum_probs=95.0
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 131 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 131 (270)
.++.++++++++.++++.|.+++.+.+||++ +|+++|+++..+++ .. . ...++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~-----~-~~~~v~~~~~~~~~~v~~~~~l~~ 74 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA-GK-----D-PDTTIEKVMTKNPITVNPKTSVAS 74 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh-cc-----c-ccccHHHHhcCCCeEECCCCCHHH
Confidence 4688999999999999999999999999999 79999999999996 21 1 235799999889999999999999
Q ss_pred HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+++.|.+++...+||+|++|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999998899999999999975
No 58
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=3.2e-15 Score=111.30 Aligned_cols=109 Identities=26% Similarity=0.344 Sum_probs=94.9
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC--CCCccchhhccCCCCeeecCCCCHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL--PADSTLVEKVMTPNPECATIDTPIV 130 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~--~~~~~~v~~im~~~~~~v~~~~~l~ 130 (270)
++.++++++++.++++.|.+++.+.+||++ +++++|+++..+++ +.+.... .....++.++|.+++.++.+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCL-KQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIV 80 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHH-HHhhhhhhccCCCccHHHHhccCceEECCCCcHH
Confidence 467899999999999999988888999998 78999999999997 4443211 1124679999998999999999999
Q ss_pred HHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 131 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 131 ~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus 81 ~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 81 DLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 9999999999999999996 99999999999985
No 59
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.64 E-value=7.3e-15 Score=108.72 Aligned_cols=109 Identities=33% Similarity=0.367 Sum_probs=96.0
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+++.+++++++.++++.|.+.+.+.+||+++++++|+++..|+. +........ ..++.++|.+++.++.+++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIR-RVPAEGREA-TVLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHH-HHHhcCccc-ccCHHHhccCCCeEECCCCCHHHHH
Confidence 57889999999999999999889999999889999999999997 555433221 2368899999999999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999999999998799999999999975
No 60
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.64 E-value=5.1e-15 Score=109.20 Aligned_cols=106 Identities=25% Similarity=0.339 Sum_probs=94.8
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 131 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 131 (270)
+++.++++++++.++++.|.++++.++||++ +++++|+++..|+. +.... ..++.++|.+.+.++++++++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~-----~~~v~~~~~~~~~~v~~~~~~~~ 75 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLE-QAYKE-----AKSLEDIMLEDVFTVQPDASLRD 75 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHH-HHhhc-----CCcHhHhhcCCceEECCCCcHHH
Confidence 3578899999999999999999999999999 68999999999996 44321 24788999999999999999999
Q ss_pred HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+++.|.+.+..++||++++|+++|++|.+|+++
T Consensus 76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999998899999999999874
No 61
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.64 E-value=8.1e-15 Score=110.15 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=96.1
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC----------CCccchhhccCCCCeee
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA 123 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~~im~~~~~~v 123 (270)
++.++++++++.++++.|.+.+.+.+||+++|+++|+++..++. +....... ....++.++|.+++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLK-LASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHH-HhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence 46789999999999999999999999999989999999999997 55432211 11356889999999999
Q ss_pred cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++++.+++..|.+.+.+.+||++++|+++|+||..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999997799999999999985
No 62
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=3.2e-15 Score=108.55 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=84.7
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
+++++.+++++.+|++.|.+++.+.+||++ +|+++|+++..|+. +.. .+.++++++++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~-----------------~~~~v~~~~~l~~a 63 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLI-AKS-----------------EVVTATKRTTVSEC 63 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHh-cCC-----------------CcEEecCCCCHHHH
Confidence 578999999999999999999999999998 79999999999996 210 17889999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus 64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998799999999999985
No 63
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.64 E-value=4.1e-15 Score=140.97 Aligned_cols=126 Identities=22% Similarity=0.230 Sum_probs=109.0
Q ss_pred HhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhcc
Q 024256 38 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 116 (270)
Q Consensus 38 ~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im 116 (270)
+.+...+++|+|+ ++++++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+. +.+.......+.++.++|
T Consensus 442 ~~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~-~~l~~~~~~~~~~v~dim 518 (574)
T PRK01862 442 ERLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDIT-SDLLDKRDTTDKTAADYA 518 (574)
T ss_pred hHHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHH-HHhhcccccccchHHHhc
Confidence 3445668999999 6788999999999999999999999999999 78999999999997 544332222246799999
Q ss_pred CCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC--CcEEEEEeHHHHHHHH
Q 024256 117 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAA 166 (270)
Q Consensus 117 ~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--g~~~Givt~~dll~~~ 166 (270)
++++.++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+++++
T Consensus 519 ~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 519 HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 9999999999999999999999999999999976 4899999999999874
No 64
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.64 E-value=4.3e-15 Score=127.04 Aligned_cols=130 Identities=22% Similarity=0.228 Sum_probs=114.7
Q ss_pred CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCe
Q 024256 43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 121 (270)
Q Consensus 43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~ 121 (270)
..|.|+|+|..+..++.+++++.+..++-.+.+++++||+| ..+++|+++.+|+. +..+ +.++..+|+++|+
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~~~-~t~ieKVMtknp~ 260 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DKKP-STTIEKVMTKNPI 260 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cCCC-CccHHHHhccCCe
Confidence 36899999988999999999999999999999999999999 89999999999997 3333 5799999999999
Q ss_pred eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCC--CCChHH
Q 024256 122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT--AGSNNE 179 (270)
Q Consensus 122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~--~~~~~~ 179 (270)
++.+.+++..+.+.|.-.+++.+||+|++.+++|+||++|+++.+-....++ ....+|
T Consensus 261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpqvget~~d 320 (432)
T COG4109 261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQVGETISD 320 (432)
T ss_pred eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCCcccccHHH
Confidence 9999999999999999999999999999999999999999999854433333 344444
No 65
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=5.8e-15 Score=112.49 Aligned_cols=110 Identities=23% Similarity=0.234 Sum_probs=94.1
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-------------CCCccchhhccCCC
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-------------PADSTLVEKVMTPN 119 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~-------------~~~~~~v~~im~~~ 119 (270)
+++++++++++.+|+++|.+.+.+.+||++ +++++|+++..|+. +++.... .....++.++|.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIV-DFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP 80 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHH-HHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence 577899999999999999999999999999 79999999999997 4432110 01135788999989
Q ss_pred CeeecCCCCHHHHHHHhHhCCCCEEEEEe--CCCcEEEEEeHHHHHH
Q 024256 120 PECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITH 164 (270)
Q Consensus 120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd--~~g~~~Givt~~dll~ 164 (270)
++++++++++.++++.|.+.+...+||++ ++|+++|+||..|+++
T Consensus 81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 99999999999999999999999999985 4689999999999985
No 66
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=6.7e-15 Score=112.01 Aligned_cols=111 Identities=20% Similarity=0.301 Sum_probs=91.2
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHH----HHhcC-CCCCccchhhccCCCCeee----
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR----VISQN-LPADSTLVEKVMTPNPECA---- 123 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~----~~~~~-~~~~~~~v~~im~~~~~~v---- 123 (270)
++.++.+++++.++++.|.+++...+||++ +|+++|+++..|+.+. ....+ ......+++++|.+++..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 367899999999999999989999999998 7899999999999621 12222 2223467999998755333
Q ss_pred --cCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHH
Q 024256 124 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 164 (270)
Q Consensus 124 --~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~ 164 (270)
.+++++.++++.|.+++.+++||+|++ |+++|+||..|+++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 368899999999999999999999986 79999999999985
No 67
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.63 E-value=8.5e-15 Score=108.10 Aligned_cols=108 Identities=24% Similarity=0.313 Sum_probs=92.8
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+++++++++++.++++.|.+++.+.+||+++++++|+++..|+. +...........++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLL-DALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHH-HHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 46789999999999999999999999999889999999999997 55543332223579999988899999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++|.+ . ..+||++++|+++|++|.+|+++
T Consensus 81 ~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 81 ELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 99988 3 34789998899999999999985
No 68
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=8.9e-15 Score=110.36 Aligned_cols=110 Identities=23% Similarity=0.400 Sum_probs=95.9
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC----------CCccchhhccCCCCeee
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA 123 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~~im~~~~~~v 123 (270)
+++++++++++.++++.|.+++++++||+++|+++|+++..++. +.+..... ....++.++|.++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHH-HHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence 57889999999999999999999999999989999999999997 54432110 01246889999999999
Q ss_pred cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 99999999999999999999999998899999999999986
No 69
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=8.5e-15 Score=110.24 Aligned_cols=109 Identities=31% Similarity=0.371 Sum_probs=95.2
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCC----------CCCccchhhccCCCCeee
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL----------PADSTLVEKVMTPNPECA 123 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~----------~~~~~~v~~im~~~~~~v 123 (270)
+++++++++++.++++.|.+.+.+.+||+++|+++|+++..++. +.+.... .....++.++|.+++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIA-DALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI 80 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHH-HhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence 47889999999999999999999999999999999999999997 5443211 112357889998899999
Q ss_pred cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999997 99999999999985
No 70
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=4.7e-15 Score=114.17 Aligned_cols=110 Identities=27% Similarity=0.409 Sum_probs=95.8
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC----------------------CCCc
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------------------PADS 109 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~----------------------~~~~ 109 (270)
++++++++++++.++++.|.++++.++||++ +++++|+++..+++ +...... ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL-RRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHH-HHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 4688999999999999999999999999999 78999999999997 4432211 0123
Q ss_pred cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
.++.++|.+++.++++++++.++++.|.+.+.+++||+| +|+++|+||..|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 578999988999999999999999999999999999999 899999999999875
No 71
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=6.3e-15 Score=111.10 Aligned_cols=110 Identities=30% Similarity=0.360 Sum_probs=95.1
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC----CC-----CCccchhhccCCCCeee
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN----LP-----ADSTLVEKVMTPNPECA 123 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~----~~-----~~~~~v~~im~~~~~~v 123 (270)
+++++.+++++.++++.|.+.+++++||++ +|+++|+++..+++ +..... .. ....++.++|.+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDII-RAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHH-hhccccccccchhhhhhhccCcHHHHhcCCCeeE
Confidence 578899999999999999999999999999 79999999999997 432100 00 12457889998889999
Q ss_pred cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 81 TPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 99999999999999999999999998899999999999985
No 72
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=1.9e-14 Score=105.45 Aligned_cols=103 Identities=27% Similarity=0.379 Sum_probs=92.6
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 133 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 133 (270)
+++++++++++.++++.|.+++.+.+||+++++++|+++..++. +.. ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~-~~~------~~~~~~~~~~~~~~~v~~~~~l~~~~ 74 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR-RAH------PNRLVADAMTREVVTISPEASLLEAK 74 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh-ccc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence 46789999999999999998898999999989999999999996 321 13578999999999999999999999
Q ss_pred HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.|.+++..++||+|+ |+++|++|..|++.
T Consensus 75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 75 RLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 9999999999999996 99999999999873
No 73
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=1.9e-14 Score=105.82 Aligned_cols=105 Identities=27% Similarity=0.383 Sum_probs=94.2
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
+++++++++.++.++++.|.+.+.+.+||+++++++|+++..+++ .. . ...++.++|.+.+.++.+++++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~-~~-----~-~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLL-GK-----D-PDETVEEIMSKDLVVAVPEMDIMDA 74 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh-cc-----C-ccccHHHhCCCCCeEECCCCCHHHH
Confidence 468899999999999999988888899999889999999999996 31 1 2357999998889999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+++...+||++++|+++|+++..|+++
T Consensus 75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999998899999999999985
No 74
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.60 E-value=2.3e-14 Score=105.86 Aligned_cols=106 Identities=32% Similarity=0.438 Sum_probs=92.5
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecC-CCCHH
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIV 130 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~-~~~l~ 130 (270)
+++.++++++++.++.+.|.+++.+.+||++ +|+++|+++.+++. +.. ....++.++|...+..+.+ ++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~-----~~~~~v~~~~~~~~~~~~~~~~~l~ 75 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR-FET-----DLDKPVSEVMTPENLLTTVEGTSLE 75 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee-ecc-----cCCCCHHHhcccCceEEecCCCCHH
Confidence 4578899999999999999999999999999 68999999999985 321 1245799999877776777 99999
Q ss_pred HHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 131 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 131 ~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 9999999999999999998899999999999985
No 75
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.60 E-value=2.3e-14 Score=107.02 Aligned_cols=106 Identities=27% Similarity=0.342 Sum_probs=92.0
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecC--C
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--D 126 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~--~ 126 (270)
.+++++.+++++.++++.|.+++.+.+||+++ |+++|+++.+|+. ... . ...++.++|.+.+..+.. +
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~-~----~~~~v~~~~~~~~~~~~~~~~ 75 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLT-D----SETPLSEVMTPREVLVVAPTG 75 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhh-c----cCCCHHHhcCCCceEEECCCC
Confidence 35788999999999999999888899999983 8999999999985 322 1 124699999887777866 9
Q ss_pred CCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 127 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 127 ~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999875
No 76
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.59 E-value=5.8e-14 Score=104.85 Aligned_cols=109 Identities=34% Similarity=0.444 Sum_probs=97.1
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
+.++++.++.++.+|...|.++++..+||++.++++|++|.+|++ +....+... ..++.++|+.++.++.++.++.++
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~-~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~ 84 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL-RALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEA 84 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhccCCc-cccHHHhccCCcEEECCCCCHHHH
Confidence 578999999999999999999999999999977999999999998 555543322 126999999899999999999999
Q ss_pred HHHhHh-CCCCEEEEEeCCC-cEEEEEeHHHHH
Q 024256 133 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT 163 (270)
Q Consensus 133 ~~~~~~-~~~~~lpVvd~~g-~~~Givt~~dll 163 (270)
++.|.+ ++.+.+||+++++ +++|++|.+|++
T Consensus 85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999 6999999999885 999999999974
No 77
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.59 E-value=3.5e-14 Score=130.61 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=107.6
Q ss_pred HHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHH-----CCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC
Q 024256 32 FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNL 105 (270)
Q Consensus 32 ~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~-----~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~ 105 (270)
.+..+.+. ...+++++|+ ++++++++++|+.++++.|.+ ++...++|++ +++++|+++.+|++ . .
T Consensus 121 ~i~~ll~~-~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl-~-----a 191 (449)
T TIGR00400 121 AINLLLSY-SDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLI-L-----A 191 (449)
T ss_pred HHHHHhCC-CcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHh-c-----C
Confidence 34444333 4678999999 789999999999999999986 3456788888 78999999999996 2 1
Q ss_pred CCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256 106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167 (270)
Q Consensus 106 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 167 (270)
. .+.+++++|+++++++++++++.+|++.|.+++...+||+|++|+++|+||.+|+++.+.
T Consensus 192 ~-~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 192 K-PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred C-CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH
Confidence 1 246899999999999999999999999999999999999999999999999999998743
No 78
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.58 E-value=7.2e-14 Score=102.72 Aligned_cols=110 Identities=34% Similarity=0.440 Sum_probs=95.7
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
++++++++.++.++.+.|.+++.+.+||++ +++++|+++..+++ +............+.++|..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA 80 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHH-HHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence 477899999999999999998899999999 68999999999998 5554433322233778898899999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999875
No 79
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=3.5e-14 Score=105.03 Aligned_cols=101 Identities=21% Similarity=0.271 Sum_probs=89.1
Q ss_pred ECCCCCHHHHHHHHHHCC-----CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256 58 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 131 (270)
Q Consensus 58 v~~~~tv~~a~~~m~~~~-----~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 131 (270)
+.+++++.++++.|.+++ +..+||++ +++++|+++.++++ + .. ...++.++|.+++.++.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~-~-----~~-~~~~v~~~~~~~~~~i~~~~~~~~ 74 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL-L-----AD-PDTPVSDIMDTDVISVSADDDQEE 74 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHh-c-----CC-CcchHHHHhCCCCeEEcCCCCHHH
Confidence 578999999999998876 46889998 78999999999996 3 11 245799999888999999999999
Q ss_pred HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++.|.+.+.+.+||+|++|+++|+||..|++++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 9999999999999999988999999999999874
No 80
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.58 E-value=2.1e-14 Score=123.58 Aligned_cols=113 Identities=27% Similarity=0.352 Sum_probs=100.4
Q ss_pred CCCccccccCCCc-eeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC
Q 024256 42 RPSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 119 (270)
Q Consensus 42 ~~~v~~im~~~~~-~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~ 119 (270)
..+++++|. ++ ++++.+++++.++++.|.+.+.+++||++ +|+++|+++..|+. +....+.. ...+++++|.++
T Consensus 154 ~~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~-~~~~~~~~-~~~~v~~im~~~ 229 (268)
T TIGR00393 154 LVKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR-RALLGGGS-LKSEVRDFMTLG 229 (268)
T ss_pred hhhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHH-HHHhcCCc-ccCcHHHhCCCC
Confidence 358999998 45 89999999999999999999999999999 79999999999997 55543322 346899999999
Q ss_pred CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEe
Q 024256 120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 158 (270)
Q Consensus 120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt 158 (270)
+.++++++++.+|++.|.+++.+.+||+|++|+++|+|+
T Consensus 230 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 230 PKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 999999999999999999999999999998899999985
No 81
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.58 E-value=4e-14 Score=106.47 Aligned_cols=109 Identities=25% Similarity=0.320 Sum_probs=94.5
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC---------CCCccchhhccCCCCeee
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECA 123 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~---------~~~~~~v~~im~~~~~~v 123 (270)
+++++++++++.+|++.|.+.+.+++||++ +++++|+++..++. +...... .....++.++|.+++.++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i 80 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR-DASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV 80 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHH-HHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence 478899999999999999999999999999 69999999999997 4432110 122357899999999999
Q ss_pred cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999986 99999999999985
No 82
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.57 E-value=6.7e-14 Score=102.76 Aligned_cols=100 Identities=26% Similarity=0.241 Sum_probs=89.8
Q ss_pred eEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHH
Q 024256 56 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI 135 (270)
Q Consensus 56 ~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~ 135 (270)
.++++++++.++++.|.+.+.+.+||+++++++|+++..++. +.. ..++.++|.+.+.+++++.++.++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIE-NAT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV 75 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHh-hhc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence 578999999999999999999999999889999999999996 321 135788998889999999999999999
Q ss_pred hHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 136 MHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 136 ~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
|.+++.+.+||++ +|+++|++|..|++.
T Consensus 76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999998 699999999999875
No 83
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=1.2e-13 Score=107.68 Aligned_cols=109 Identities=30% Similarity=0.378 Sum_probs=94.9
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC---------------------------
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP--------------------------- 106 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~--------------------------- 106 (270)
+++++++++++.++++.|.+.+++.+||+++++++|+++..+++ +++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDIL-KLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHH-HHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 57889999999999999999999999999889999999999997 55532210
Q ss_pred -----CCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 107 -----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 107 -----~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
....++.++|.+++.++++++++.+++..|.+.+...+||+++ |+++|+++..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0235688899889999999999999999999999999999996 99999999999974
No 84
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.55 E-value=1.2e-13 Score=101.82 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=88.7
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCC
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP 128 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~ 128 (270)
+....+.+++++.++.+.|.+.+.+.+||+++ |+++|+++.+++. +...+ +|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~-~~~~~-----------~m~~~~~~v~~~~~ 69 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLV-VALKN-----------YIDPSPFTVSPRTS 69 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHH-HHHHH-----------hccCCCceECCCCc
Confidence 45788999999999999999988889999985 8999999999996 44322 88888899999999
Q ss_pred HHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 129 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 129 l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+.++++.|.+++.+++||++ +|+++|+||.+|+++
T Consensus 70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 99999999999999999996 789999999999975
No 85
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.55 E-value=1.3e-13 Score=127.36 Aligned_cols=120 Identities=19% Similarity=0.220 Sum_probs=102.1
Q ss_pred hCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC
Q 024256 40 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 118 (270)
Q Consensus 40 ~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~ 118 (270)
+...+++++|. +++.++.+++++.++++.|.+++++.+||++ +++++|+|+..|++ +.+.........++.++|.+
T Consensus 332 l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~im~~ 408 (454)
T TIGR01137 332 LKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELL-SALFAGKANPDDAVSKVMSK 408 (454)
T ss_pred hccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH-HHHhccCCCcCCCHHHhcCC
Confidence 56678999998 6899999999999999999999999999998 78999999999997 55443322224579999999
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.++++.|.+++ .|||+++|+++|+||..||+++
T Consensus 409 ~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 409 KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence 9999999999999999998754 3555557999999999999986
No 86
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=1.9e-13 Score=102.51 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=92.0
Q ss_pred ceeEECCCCCHHHHHHHHHHCC-CcEEEEEeCCEEEEEeeHHHHHHHHHhcCC---CCCccchhhccCCCCeeecCCCCH
Q 024256 54 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNL---PADSTLVEKVMTPNPECATIDTPI 129 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~-~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~im~~~~~~v~~~~~l 129 (270)
+++++++++++.++++.|...+ ++.+||+++|+++|+++..+++ +...... .....++.++|.+++..+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALM-ELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHH-HHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence 4678999999999999998876 8899999889999999999997 5443210 012357999999999999999999
Q ss_pred HHHHHHhHhCCCC---EEEEEeCCCcEEEEEeHHHHHH
Q 024256 130 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 130 ~~a~~~~~~~~~~---~lpVvd~~g~~~Givt~~dll~ 164 (270)
.++++.|.+++.. ..||++++|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999988753 4478888899999999999975
No 87
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=1.1e-12 Score=96.47 Aligned_cols=103 Identities=28% Similarity=0.409 Sum_probs=90.8
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
++.++.+++++.+++..|.+.+++.+||++ +++++|+++..+++ +. . ...++.++|..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~-~~----~--~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-RN----P--EEEQLALLMTRDPPTVSPDDDVKEA 74 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHH-hc----c--ccchHHHHhcCCCceECCCCCHHHH
Confidence 467899999999999999998999999998 68999999999996 31 1 1246888898889999999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+..|.+++.+.+||+| +|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999998 479999999999875
No 88
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.48 E-value=2.7e-13 Score=110.26 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=119.5
Q ss_pred HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCCC
Q 024256 31 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPAD 108 (270)
Q Consensus 31 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~ 108 (270)
+.++.+.+. ...+|+|+|.|++...++..+.++.+++..+.+..++++||+. .+.+.|++..+|++ +++.....
T Consensus 56 ~mlEGvm~i-adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~-- 131 (293)
T COG4535 56 DMLEGVMDI-ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAE-- 131 (293)
T ss_pred HHHHHHHHH-HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcc--
Confidence 444444433 3678999999999999999999999999999999999999997 57799999999999 77655433
Q ss_pred ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCC
Q 024256 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAG 175 (270)
Q Consensus 109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~ 175 (270)
...++++. +|.++|+++-.+...++-|+.++.+.+.|+|+.|.+.|+||..|+++.++..+.++.+
T Consensus 132 ~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~D 197 (293)
T COG4535 132 PFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYD 197 (293)
T ss_pred cccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccc
Confidence 24688887 5778899999999999999999999999999999999999999999998877665444
No 89
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.47 E-value=4.9e-13 Score=115.63 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=134.9
Q ss_pred HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCCC
Q 024256 31 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPAD 108 (270)
Q Consensus 31 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~ 108 (270)
+.+..+.+ +.+.+|+|+|.|+.++..++.+++.+++.+.+.+..++++|+.. -+.++|++..+|++ +++.+.....
T Consensus 189 dmL~gvLD-Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~ll-r~l~e~~~~~ 266 (423)
T COG4536 189 DMLLGVLD-LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLL-RLLNEKNEFT 266 (423)
T ss_pred HHHhcccc-cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHH-HHhhccCccc
Confidence 44444433 24679999999999999999999999999999999999999997 35699999999998 7776654333
Q ss_pred ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 024256 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKF 188 (270)
Q Consensus 109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (270)
...+..+. .+|+++++++++.+-+..|.+++-+...||||.|.+.|+||..||++.++..+.+.+++..+ ....+.
T Consensus 267 k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~---ev~~q~ 342 (423)
T COG4536 267 KEDILRAA-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAK---EVIPQS 342 (423)
T ss_pred HhHHHHHh-cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccch---hhcccC
Confidence 33344443 47889999999999999999999999999999999999999999999987666544443322 222233
Q ss_pred HHHhhccCCCCCCCccccccccccccCCCCc
Q 024256 189 WDSAMALSPNDDEEDNRSEGSLKFASEGADT 219 (270)
Q Consensus 189 ~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~ 219 (270)
.+++.+ ++..+.+|+.+.+.=+.|+.
T Consensus 343 dgs~ii-----dGs~~iRdlNr~l~W~Lp~e 368 (423)
T COG4536 343 DGSFII-----DGSANVRDLNRALDWNLPDE 368 (423)
T ss_pred CCcEEE-----eCCCcHHHHHHhcCCCCCCC
Confidence 333322 12367788888776665543
No 90
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.43 E-value=2.9e-13 Score=113.39 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=54.4
Q ss_pred ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
.....++|+++++++++++++.+|.+++.++++..+||+|++.+++|+||.+|+++.
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH 300 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence 467899999999999999999999999999999999999999999999999999985
No 91
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.43 E-value=2.4e-12 Score=121.56 Aligned_cols=122 Identities=26% Similarity=0.330 Sum_probs=105.9
Q ss_pred CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC---------------
Q 024256 42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL--------------- 105 (270)
Q Consensus 42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~--------------- 105 (270)
..+++++|. ++++++++++++.+|++.|.+++++.+||++ +|+++|+++..|+.+.......
T Consensus 67 ~~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~ 144 (546)
T PRK14869 67 KPQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII 144 (546)
T ss_pred CCcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence 368999999 6899999999999999999999999999999 7999999999999843332110
Q ss_pred -------------------------------------------------------------------C------------
Q 024256 106 -------------------------------------------------------------------P------------ 106 (270)
Q Consensus 106 -------------------------------------------------------------------~------------ 106 (270)
.
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~ 224 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKEN 224 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhC
Confidence 0
Q ss_pred ------------------CCccchhhccC-CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 107 ------------------ADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 107 ------------------~~~~~v~~im~-~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
....+++++|+ +++.++++++++.++.+.|.+++.+.+||+|++|+++|+||.+|++..
T Consensus 225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 225 GVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSP 302 (546)
T ss_pred CCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcc
Confidence 01247789999 889999999999999999999999999999999999999999999985
No 92
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.41 E-value=3.6e-12 Score=98.17 Aligned_cols=97 Identities=32% Similarity=0.332 Sum_probs=79.3
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCc-----------cchhhcc-----
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-----------TLVEKVM----- 116 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~-----------~~v~~im----- 116 (270)
+++++.+++++.+|++.|.+++.+++||++ +|+++|+++..|++ +.......... ..+.++|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQ-RFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHH-HHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 578999999999999999999999999999 79999999999998 54433221110 1134455
Q ss_pred ----CCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC
Q 024256 117 ----TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 151 (270)
Q Consensus 117 ----~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g 151 (270)
..+++++++++++.+|++.|.+++.+.+||+|+++
T Consensus 81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 46789999999999999999999999999998643
No 93
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.37 E-value=1.9e-12 Score=106.58 Aligned_cols=123 Identities=15% Similarity=0.240 Sum_probs=89.2
Q ss_pred CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 024256 108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQK 187 (270)
Q Consensus 108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 187 (270)
+..+++++|+++++++.+++|+.+|..+|.+++++..||+|+ ++++|++|.+|+..++.+ +......++. |
T Consensus 170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~--g~~~~kV~~~----M-- 240 (294)
T COG2524 170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIAN--GNLDAKVSDY----M-- 240 (294)
T ss_pred CcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHc--CCccccHHHH----h--
Confidence 357899999999999999999999999999999999999994 599999999999998553 2222222221 1
Q ss_pred HHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 188 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 188 ~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
...++.+.+... ..|.++.+- .+.... +-|+|.+|+. +||+|+.|||..|+.
T Consensus 241 -~k~vitI~eDe~----i~dAir~M~----------~~nVGR--------LlV~ds~gkp----vGiITrTDIL~~ia~ 292 (294)
T COG2524 241 -RKNVITINEDED----IYDAIRLMN----------KNNVGR--------LLVTDSNGKP----VGIITRTDILTRIAG 292 (294)
T ss_pred -ccCCceEcCchh----HHHHHHHHH----------hcCcce--------EEEEccCCcE----EEEEehHHHHHHhhc
Confidence 223333332222 334444441 111222 5699999999 999999999999864
No 94
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.34 E-value=9.1e-12 Score=113.07 Aligned_cols=117 Identities=19% Similarity=0.279 Sum_probs=105.1
Q ss_pred CCCCccccccCCCceeEECCCCCHHHHHHHHHHC-----CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhh
Q 024256 41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK 114 (270)
Q Consensus 41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~-----~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~ 114 (270)
...+++.+|+ ++++++.++.|+.+++..+++. ....+.|+| ++++.|+++.++++ ...++.++++
T Consensus 130 ~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~ 200 (451)
T COG2239 130 PEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKD 200 (451)
T ss_pred Chhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHH
Confidence 3457899999 8999999999999999999964 467789999 88999999999997 2234689999
Q ss_pred ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 115 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
+|.+.+++++++++.+++.+.|.+++.-.+||||++++++|+||..|++..+
T Consensus 201 im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi 252 (451)
T COG2239 201 LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI 252 (451)
T ss_pred HhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998863
No 95
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.30 E-value=1.6e-11 Score=94.15 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=60.8
Q ss_pred eHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256 92 TSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167 (270)
Q Consensus 92 t~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 167 (270)
+.+.++ +++.+... ....++.+|+.+++++++++++.++.++|.+++++.+||+++ |+++|-||..+|.+..+
T Consensus 49 t~k~Il-~aL~e~e~-~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~l 121 (187)
T COG3620 49 TVKRIL-EALEEAEK-TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALL 121 (187)
T ss_pred HHHHHH-HHHHHhhc-ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHh
Confidence 345555 44443333 346789999999999999999999999999999999999994 99999999999999744
No 96
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.25 E-value=2.4e-11 Score=105.64 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=95.4
Q ss_pred EEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256 89 GILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 165 (270)
Q Consensus 89 Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~ 165 (270)
|.++..+- .++.+-....+.+++++|++ ++.++++++++.++++.+.+.+++++||++++ ++++|+|+.+|++..
T Consensus 48 g~l~~~e~--~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~ 125 (292)
T PRK15094 48 DLIDEDTR--DMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 125 (292)
T ss_pred CCCCHHHH--HHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence 66666554 55555556667899999998 68999999999999999999999999999876 789999999999964
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCC
Q 024256 166 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG 245 (270)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g 245 (270)
... ......+.+ + ......+.+ ..+..++++.+..+ ......|+|++|
T Consensus 126 ~~~--~~~~~~l~~----l----~r~~~~V~e----~~~l~~~L~~m~~~------------------~~~~a~VvDe~G 173 (292)
T PRK15094 126 MRS--DAEAFSMDK----V----LRQAVVVPE----SKRVDRMLKEFRSQ------------------RYHMAIVIDEFG 173 (292)
T ss_pred hhc--cCCcCCHHH----H----cCCCcCcCC----CCcHHHHHHHHHhc------------------CCEEEEEEeCCC
Confidence 210 011111111 1 111111110 12333333333111 111356999999
Q ss_pred CeeEeecCCCChHHHHHhhhhh
Q 024256 246 LMHRFTCGMLPFPNFIEVTNYE 267 (270)
Q Consensus 246 ~l~~~~vGivs~~Dil~~i~~~ 267 (270)
.+ +|+||++||+++|..+
T Consensus 174 ~v----iGiVTleDIle~ivGe 191 (292)
T PRK15094 174 GV----SGLVTIEDILELIVGE 191 (292)
T ss_pred CE----EEEeEHHHHHHHHhCC
Confidence 99 9999999999998653
No 97
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.24 E-value=3.3e-11 Score=78.51 Aligned_cols=55 Identities=35% Similarity=0.570 Sum_probs=52.4
Q ss_pred hhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 112 v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++++|+++++++++++++.++++.|.+++.+++||+|++|+++|++|.+||++++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789999999999999999999999999999999999999999999999999873
No 98
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.21 E-value=1.2e-10 Score=104.35 Aligned_cols=113 Identities=28% Similarity=0.362 Sum_probs=93.7
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCCC------ccchhhccC---CCCe
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPAD------STLVEKVMT---PNPE 121 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~------~~~v~~im~---~~~~ 121 (270)
+.++.+.|..++.++...+.++++.++||.| .+.+..++|.+-++ +.+....... ..++.++-. ..+.
T Consensus 162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl-~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~ 240 (381)
T KOG1764|consen 162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRIL-KFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIA 240 (381)
T ss_pred CCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHH-HHHHHhhcccccHHHhhCCHHHhCcchhhhhe
Confidence 3448999999999999999999999999998 68999999999998 6665433221 123333321 2578
Q ss_pred eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
.+..++++.+|+++|..++++.+||+|++|+.+|.++..|+....
T Consensus 241 ~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~ 285 (381)
T KOG1764|consen 241 SISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLA 285 (381)
T ss_pred eecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhh
Confidence 899999999999999999999999999999999999999998863
No 99
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.19 E-value=3.5e-11 Score=109.35 Aligned_cols=67 Identities=13% Similarity=0.284 Sum_probs=57.5
Q ss_pred HHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256 99 RVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 165 (270)
Q Consensus 99 ~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~ 165 (270)
+++.+-....+.+++++|+| ++++++.++++.++++.+.+++++++||++++ ++++|+|+.+|++..
T Consensus 180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~ 249 (408)
T TIGR03520 180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPH 249 (408)
T ss_pred HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhH
Confidence 33444445557899999998 78999999999999999999999999999864 689999999999864
No 100
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.18 E-value=1.9e-10 Score=87.29 Aligned_cols=123 Identities=14% Similarity=0.177 Sum_probs=76.5
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCC
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSP 197 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (270)
+++.++++++++.++++.|.+++...+||+|++|+++|+++..|++............++.+ .+.. ....+..
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~----im~~---~~~~v~~ 74 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSK----ALYK---QFKRVNK 74 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHH----Hhhc---cceecCC
Confidence 46788999999999999999999999999998899999999999998654432222223222 2211 1222221
Q ss_pred CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhh
Q 024256 198 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVT 264 (270)
Q Consensus 198 ~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i 264 (270)
. .+..++.+.+....... ..+ .....+..|+|++|++ +||+|.+|+++.+
T Consensus 75 ~----~~~~~v~~~~~~~~~~~-~~~--------~~~~~~~~v~~~~~~~----~Givt~~Dl~~~~ 124 (124)
T cd04608 75 N----DTLGKLSRILETDAFLL-VFF--------EQISSAAIGKEKQEKP----IGIVTKIDLLSYI 124 (124)
T ss_pred C----CCHHHHHhhcccCCceE-EEe--------ccccccccccccccce----EEEEehhHhhhhC
Confidence 1 11222333221100000 000 0112235688999999 9999999999864
No 101
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.18 E-value=7.4e-11 Score=85.86 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=43.1
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~ 165 (270)
.++++++++++.+|.+.|.+++.+.+||+|++ |+++|++|..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~ 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh
Confidence 46789999999999999999999999999974 899999999999875
No 102
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.16 E-value=1.6e-10 Score=83.68 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=43.6
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.+|++.|.+++++.+||+|++|+++|+++..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 56789999999999999999999999999988999999999999874
No 103
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=2e-10 Score=86.28 Aligned_cols=47 Identities=34% Similarity=0.595 Sum_probs=44.1
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|++..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~ 48 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHH
Confidence 56789999999999999999999999999988999999999999975
No 104
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.11 E-value=9.6e-10 Score=98.65 Aligned_cols=115 Identities=21% Similarity=0.238 Sum_probs=95.4
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-CCCCccc-hhhcc------CCCCeeec
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTL-VEKVM------TPNPECAT 124 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~-~~~~~~~-v~~im------~~~~~~v~ 124 (270)
++..+..++++.+|++.|...+++.+||++ .|+.+|.++..|+. .....+ ....... ++... ...+++++
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~ 316 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVI-HLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCR 316 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhh-hhhhcCccCccchhHHHHHhhhcccccCccEEEe
Confidence 488999999999999999999999999999 77779999999997 444332 2222223 33332 12679999
Q ss_pred CCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHH
Q 024256 125 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 169 (270)
Q Consensus 125 ~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~ 169 (270)
++.++.+++..|..++++++.|||++|.++|+||..|++.++...
T Consensus 317 ~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 317 PTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred ecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999986543
No 105
>PRK11573 hypothetical protein; Provisional
Probab=99.04 E-value=2.1e-09 Score=97.91 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=57.0
Q ss_pred HHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256 100 VISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 165 (270)
Q Consensus 100 ~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~ 165 (270)
++.+-....+.+++++|+| ++.+++.+.++.++++.+.+.+++++||++++ ++++|+++.+|++..
T Consensus 177 mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~ 245 (413)
T PRK11573 177 MLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRL 245 (413)
T ss_pred HHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHH
Confidence 3334444557899999998 78999999999999999999999999999865 789999999999974
No 106
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.01 E-value=2.8e-09 Score=97.76 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=66.9
Q ss_pred EEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEe-CCCcEEEEEeHHHHHH
Q 024256 88 RGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITH 164 (270)
Q Consensus 88 ~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~g~~~Givt~~dll~ 164 (270)
.|.+...+- +++.+-....+.+++++|+| ++.+++.+.+..++.+.+.+.+++++||++ +.++++|+++.+|++.
T Consensus 186 ~g~~~~~E~--~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~ 263 (429)
T COG1253 186 EGVLEEEER--EMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR 263 (429)
T ss_pred cCCcCHHHH--HHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence 577777775 67777777778999999998 678999999999999999999999999999 4478999999999999
Q ss_pred H
Q 024256 165 A 165 (270)
Q Consensus 165 ~ 165 (270)
+
T Consensus 264 ~ 264 (429)
T COG1253 264 A 264 (429)
T ss_pred H
Confidence 7
No 107
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.01 E-value=3.8e-10 Score=99.73 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=81.2
Q ss_pred cchhhccCCC--CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 024256 110 TLVEKVMTPN--PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQK 187 (270)
Q Consensus 110 ~~v~~im~~~--~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 187 (270)
.+|+++|.++ +.++++++++.+|++.|.+.+...+||+|++|+++|+|+..|+.+.+... ......+.+ .+.
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~-~~~~~~v~~----im~- 270 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG-GALTTPVNE----AMT- 270 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC-CCcCCcHHH----hcC-
Confidence 5799999988 99999999999999999988889999999999999999999998743210 011111111 110
Q ss_pred HHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHh
Q 024256 188 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEV 263 (270)
Q Consensus 188 ~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~ 263 (270)
.....+.+ ..+..+....+.. ... ..++|+|++|++ +|+||++|++++
T Consensus 271 --~~~~~v~~----~~~l~~a~~~m~~----------~~~--------~~lpVvd~~~~l----vGvIt~~di~~~ 318 (321)
T PRK11543 271 --RGGTTLQA----QSRAIDAKEILMK----------RKI--------TAAPVVDENGKL----TGAINLQDFYQA 318 (321)
T ss_pred --CCCEEECC----CCCHHHHHHHHHH----------cCC--------CEEEEEcCCCeE----EEEEEHHHHHhc
Confidence 01111111 1233334443321 111 137899999999 999999999974
No 108
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.01 E-value=1.4e-09 Score=80.98 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=43.4
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
.+.++++++++.++++.|.+.+...+||+|++|+++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~ 48 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQ 48 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHH
Confidence 35678999999999999999999999999989999999999999875
No 109
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.01 E-value=1.2e-09 Score=70.99 Aligned_cols=54 Identities=26% Similarity=0.397 Sum_probs=50.0
Q ss_pred ccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHH
Q 024256 45 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 101 (270)
Q Consensus 45 v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~ 101 (270)
|+++|+ ++++++++++++.++++.|.+++.+++||+| +|+++|++|.+|++ +++
T Consensus 1 v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~-~~l 55 (57)
T PF00571_consen 1 VGDIMT--PPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLL-KAL 55 (57)
T ss_dssp HHHHSB--SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHH-HHH
T ss_pred CeECCc--CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHH-hhh
Confidence 568899 6899999999999999999999999999998 99999999999998 554
No 110
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.98 E-value=7.1e-10 Score=102.19 Aligned_cols=141 Identities=17% Similarity=0.201 Sum_probs=94.0
Q ss_pred EEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHh-----CCCCEEEEEeCCCcEEEEEeHH
Q 024256 86 KPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHD-----GKFLHLPVVDRDGDVVDVVDVI 160 (270)
Q Consensus 86 ~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~-----~~~~~lpVvd~~g~~~Givt~~ 160 (270)
++++.+...+- +.+.+-....+.+++++|++++.++++++++.++++.|++ .+...+||+|++++++|+|+.+
T Consensus 109 ~lL~~l~~~er--~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~ 186 (449)
T TIGR00400 109 QLLASSTEEER--KAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIR 186 (449)
T ss_pred HHHHcCCHHHH--HHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHH
Confidence 34556666554 3333334445678999999999999999999999999975 3456789999889999999999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEe
Q 024256 161 HITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240 (270)
Q Consensus 161 dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~V 240 (270)
|++.. ....+..+ .+. .....+.+ ..+..+..+.+... . ....+|
T Consensus 187 dLl~a------~~~~~v~~----im~---~~~~~v~~----~~~~~eal~~m~~~----------~--------~~~lpV 231 (449)
T TIGR00400 187 DLILA------KPEEILSS----IMR---SSVFSIVG----VNDQEEVARLIQKY----------D--------FLAVPV 231 (449)
T ss_pred HHhcC------CCCCcHHH----HhC---CCCeeECC----CCCHHHHHHHHHHc----------C--------CCEEeE
Confidence 99853 11111111 111 01111111 12344445444211 1 113789
Q ss_pred ecCCCCeeEeecCCCChHHHHHhhhhh
Q 024256 241 QDNKGLMHRFTCGMLPFPNFIEVTNYE 267 (270)
Q Consensus 241 vD~~g~l~~~~vGivs~~Dil~~i~~~ 267 (270)
+|++|++ +|++|.+|+++.+..+
T Consensus 232 VD~~g~l----vGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 232 VDNEGRL----VGIVTVDDIIDVIQSE 254 (449)
T ss_pred EcCCCeE----EEEEEHHHHHHHHHhh
Confidence 9999999 9999999999998654
No 111
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.96 E-value=2.8e-09 Score=79.28 Aligned_cols=48 Identities=31% Similarity=0.488 Sum_probs=44.1
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
|++.++++++++.++++.|.+.+...+||+|++|+++|+++..||+..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (115)
T cd04593 1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRA 48 (115)
T ss_pred CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHH
Confidence 456789999999999999999999999999988999999999999975
No 112
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.94 E-value=1.3e-09 Score=80.74 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=42.8
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.+|++.|.+++.+.+||+|++|+++|+|+..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI 48 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence 45788999999999999999999999999988999999999999863
No 113
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.92 E-value=3e-08 Score=88.74 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=92.2
Q ss_pred ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256 54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132 (270)
Q Consensus 54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 132 (270)
..+...++.+..++++.|...+.+.+.|++ ++++.|.++..++. ++.... ..+.+.+.+.+.++++++++.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 324 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKKA-----QGLQDVLIDDIYTVDAGTLLRET 324 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhcC-----CchhhhhccCCceECCCCcHHHH
Confidence 334567788999999999999999999998 89999999999985 554322 35778888888899999999999
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 167 (270)
+..|.+++.. +||+|++|+++|+||..+++.++.
T Consensus 325 ~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 325 VRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred HHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 9999999988 999999999999999999998743
No 114
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.92 E-value=4.3e-09 Score=79.22 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=44.5
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..||+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~ 49 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRH 49 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhh
Confidence 577889999999999999999999999999988999999999999875
No 115
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.91 E-value=2.9e-09 Score=101.21 Aligned_cols=125 Identities=14% Similarity=0.230 Sum_probs=83.6
Q ss_pred ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 024256 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKF 188 (270)
Q Consensus 109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (270)
..+++++|++++.++++++++.++.+.|.+++.+.+||+|++|+++|+|+.+|+.+..............+ .+.
T Consensus 446 ~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~d----im~-- 519 (574)
T PRK01862 446 TTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAAD----YAH-- 519 (574)
T ss_pred hCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHH----hcc--
Confidence 46899999999999999999999999999999999999998899999999999987532110000011111 110
Q ss_pred HHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCC--CCeeEeecCCCChHHHHHhhhh
Q 024256 189 WDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK--GLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 189 ~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~--g~l~~~~vGivs~~Dil~~i~~ 266 (270)
.....+.+ ..+..+..+.+.+ .... ..+|+|++ |++ +|++|++|+++++..
T Consensus 520 -~~~~~v~~----d~~L~~al~~m~~----------~~~~--------~lpVVd~~~~~~l----iGvIt~~DIl~~l~~ 572 (574)
T PRK01862 520 -TPFPLLTP----DMPLGDALEHFMA----------FQGE--------RLPVVESEASPTL----AGVVYKTSLLDAYRR 572 (574)
T ss_pred -CCCeeECC----CCCHHHHHHHHHh----------cCCC--------eeeeEeCCCCCeE----EEEEEHHHHHHHHHh
Confidence 01111111 1233444444411 1111 37899886 589 999999999998754
No 116
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.90 E-value=2.8e-09 Score=94.43 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=51.4
Q ss_pred ccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 109 STLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 109 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
..+++++|++ ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+.+.
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~ 259 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRV 259 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHH
Confidence 3468999987 89999999999999999999888888888988999999999999764
No 117
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=3.3e-08 Score=89.58 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=95.0
Q ss_pred CccccccCCC-ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCe
Q 024256 44 SLSTIIPEKS-KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 121 (270)
Q Consensus 44 ~v~~im~~~~-~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~ 121 (270)
++.++|.+.. ..+...++.+..+++..|...+.+.++|++ ++++.|+++..++. +.... ..++.+.+.+...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~ 348 (400)
T PRK10070 275 SAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQ-----QQGLDAALIDAPL 348 (400)
T ss_pred chhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhc-----CCchhhhhccCCc
Confidence 5567775311 112345778899999999999999999999 89999999999996 44432 1357777878888
Q ss_pred eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++++++++.+++..+.+.... +||+|++|+++|+|+..++++.+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~ 392 (400)
T PRK10070 349 AVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRAL 392 (400)
T ss_pred eeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHH
Confidence 999999999999999987766 99999999999999999999874
No 118
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.90 E-value=5.1e-09 Score=77.79 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=44.1
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.++++++++.++++.|.+++.+.+||+|++|+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~ 49 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKL 49 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHh
Confidence 467899999999999999999999999999889999999999998753
No 119
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.89 E-value=2.4e-08 Score=75.20 Aligned_cols=47 Identities=13% Similarity=0.282 Sum_probs=43.2
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~ 165 (270)
++.++++++++.++++.|.+++..++||+|++ |+++|+|+..|+++.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~ 49 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEF 49 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHH
Confidence 56789999999999999998889999999987 899999999999875
No 120
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.88 E-value=4.1e-09 Score=97.09 Aligned_cols=119 Identities=16% Similarity=0.317 Sum_probs=82.0
Q ss_pred chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC---CcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 024256 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQK 187 (270)
Q Consensus 111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 187 (270)
...+.|.+++.++++++++.++++.|.+++++.+||+|++ ++++|+||.+|++.. .....++.+. +..
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~-----~~~~~~V~dv----m~~ 151 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV-----KDKGKPVSEV----MTR 151 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh-----hcCCCCHHHh----hCC
Confidence 5667788899999999999999999999999999999977 799999999999753 1111222221 100
Q ss_pred HHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 188 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 188 ~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
..+..+.+ ..+..++.+.+.... . ..++|+|++|++ +|+||++||++.+++
T Consensus 152 --~~~~~V~~----~~sl~eal~~m~~~~----------~--------~~lpVVDe~G~l----vGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 152 --EEVITVPE----GIDLEEALKVLHEHR----------I--------EKLPVVDKNGEL----VGLITMKDIVKRRKF 202 (450)
T ss_pred --CCCEEECC----CCcHHHHHHHHHHcC----------C--------CeEEEEcCCCcE----EEEEEhHHhhhcccC
Confidence 01111111 123334444442111 1 137899999999 999999999999865
No 121
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.88 E-value=8.8e-09 Score=75.92 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=72.7
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCC
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSP 197 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (270)
++.+++++.++.++++.|.+.+.+.+||+|++ |+++|+++..|+++...... ...... .+. .....+..
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~--~~~~~~----~~~----~~~~~v~~ 71 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE--EDLDLR----DLL----RPPLFVPE 71 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC--CcCCHH----HHh----cCCeecCC
Confidence 46789999999999999999889999999987 99999999999998633211 000111 111 11211111
Q ss_pred CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHh
Q 024256 198 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEV 263 (270)
Q Consensus 198 ~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~ 263 (270)
..+..++.+.+.... .-.++|+|++|++ +|++|++|++++
T Consensus 72 ----~~~l~~~~~~~~~~~------------------~~~~~Vv~~~~~~----~Gvit~~di~~~ 111 (111)
T cd04590 72 ----STPLDDLLEEMRKER------------------SHMAIVVDEYGGT----AGLVTLEDILEE 111 (111)
T ss_pred ----CCcHHHHHHHHHhcC------------------CcEEEEEECCCCE----EEEeEHHHhhcC
Confidence 123344444442111 1136799999999 999999999863
No 122
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.87 E-value=4.9e-09 Score=78.48 Aligned_cols=48 Identities=31% Similarity=0.369 Sum_probs=44.1
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.++++++++.++++.|.+++...+||+|++|+++|+++..|+.+..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~ 49 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKAS 49 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 567899999999999999989999999999889999999999999863
No 123
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.87 E-value=2e-08 Score=86.68 Aligned_cols=170 Identities=15% Similarity=0.227 Sum_probs=108.8
Q ss_pred CceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCC-CccchhhccCC--CCeeecCCCCH
Q 024256 53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPA-DSTLVEKVMTP--NPECATIDTPI 129 (270)
Q Consensus 53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~-~~~~v~~im~~--~~~~v~~~~~l 129 (270)
...+-+.....+.+-+..+.+ -.++||.... .-.+|...++++++.+..-. +-..+.++|+| ...++.+++++
T Consensus 134 ~~AVLvTGGF~~s~evi~lAn--e~~lPvlsts--YDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v 209 (432)
T COG4109 134 GNAVLVTGGFDVSDEVIKLAN--EKGLPVLSTS--YDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTV 209 (432)
T ss_pred CCeEEEeCCCCccHHHHHhhc--ccCCceEEec--ccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccH
Confidence 344555555555443333332 2457888722 13457777777777654322 23579999995 77889999999
Q ss_pred HHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccc
Q 024256 130 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGS 209 (270)
Q Consensus 130 ~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~ 209 (270)
.+-.++..+.+.+++||+|...+++|+||.+|++.. ..+.++...... ..+.+.. .-|...+.
T Consensus 210 ~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~------~~~t~ieKVMtk-------np~tv~~----~tsVAsva 272 (432)
T COG4109 210 EDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK------KPSTTIEKVMTK-------NPITVRA----KTSVASVA 272 (432)
T ss_pred HHHHHHHHHcCCCccceecccceEEEEEEehhhhcC------CCCccHHHHhcc-------CCeeecc----cchHHHHH
Confidence 999999999999999999999999999999999974 222222211000 0000000 01111111
Q ss_pred cccccCCCCccccccCCCCCCCCCCce-eEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 210 LKFASEGADTARYLSYPSPSPGVPSAF-AFKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 210 ~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
..+ .+ +++ ..||+|++.++ +|++|++|+++++..
T Consensus 273 q~M-----------iw--------E~iem~PVv~~n~~l----lGiitR~dvlk~lq~ 307 (432)
T COG4109 273 QMM-----------IW--------EGIEMLPVVDSNNTL----LGIITRQDVLKSLQM 307 (432)
T ss_pred HHH-----------Hh--------ccceeeeEEcCCceE----EEEEEHHHHHHHHHH
Confidence 111 11 122 57899999999 999999999999864
No 124
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.87 E-value=5.1e-09 Score=96.62 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=83.0
Q ss_pred cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 024256 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFW 189 (270)
Q Consensus 110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (270)
.++.++|.++++++++++++.++++.|.+++++.+||+|++++++|+||.+|+... .....+.+ .+.
T Consensus 89 VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~------~~~~~V~d----iMt--- 155 (479)
T PRK07807 89 VKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV------DRFTQVRD----VMS--- 155 (479)
T ss_pred cccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC------ccCCCHHH----hcc---
Confidence 46678999999999999999999999999999999999988999999999998532 11111221 111
Q ss_pred HHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 190 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 190 ~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
..+..+. ...+..+....+..... -.++|+|++|++ +|+||++||++...+
T Consensus 156 ~~~itV~----~d~sL~eAl~lM~~~~i------------------~~LPVVD~~g~l----vGIIT~~DIl~~~~~ 206 (479)
T PRK07807 156 TDLVTLP----AGTDPREAFDLLEAARV------------------KLAPVVDADGRL----VGVLTRTGALRATIY 206 (479)
T ss_pred CCceEEC----CCCcHHHHHHHHHhcCC------------------CEEEEEcCCCeE----EEEEEHHHHHHHhhC
Confidence 1111111 11334444444421111 137899999999 999999999997654
No 125
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.85 E-value=6.2e-09 Score=94.77 Aligned_cols=130 Identities=21% Similarity=0.293 Sum_probs=91.0
Q ss_pred HHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCC-----CCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCC
Q 024256 100 VISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA 174 (270)
Q Consensus 100 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~-----~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~ 174 (270)
.+....+++...++.+|+.++++++++.|+.+++..+++.+ ..++.|+|+++++.|+++.++++.+ +..
T Consensus 122 ~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a------~~~ 195 (451)
T COG2239 122 RVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA------EPD 195 (451)
T ss_pred HHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC------CcH
Confidence 33444555667899999999999999999999999999543 5788999999999999999999964 211
Q ss_pred CChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCC
Q 024256 175 GSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGM 254 (270)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGi 254 (270)
..+ ...+.+ ....+... .++.+..+.+. .+... +.+|||++|++ +|+
T Consensus 196 ~~i----~~im~~---~~~~V~~~----~dqeevA~~~~----------~ydl~--------a~PVVd~~~~L----iG~ 242 (451)
T COG2239 196 ELL----KDLMED---DVVSVLAD----DDQEEVARLFE----------KYDLL--------AVPVVDEDNRL----IGI 242 (451)
T ss_pred hHH----HHHhcc---cceeeccc----CCHHHHHHHHH----------HhCCe--------ecceECCCCce----eee
Confidence 111 112211 11111111 22344444441 22233 37899999999 999
Q ss_pred CChHHHHHhhhhhc
Q 024256 255 LPFPNFIEVTNYEY 268 (270)
Q Consensus 255 vs~~Dil~~i~~~~ 268 (270)
+|.+|+++.++.|.
T Consensus 243 itiDDiidvi~eEa 256 (451)
T COG2239 243 ITIDDIIDVIEEEA 256 (451)
T ss_pred eeHHHHHHHHHHHH
Confidence 99999999998764
No 126
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.85 E-value=1.2e-08 Score=75.74 Aligned_cols=50 Identities=24% Similarity=0.289 Sum_probs=44.9
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHAAV 167 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~ 167 (270)
+++.++++++++.++++.|.+++.+.+||+|++ |+++|+++..|+++.+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04630 1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVV 51 (114)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHH
Confidence 357789999999999999999999999999987 89999999999998644
No 127
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.85 E-value=7.4e-09 Score=95.80 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=53.6
Q ss_pred ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
..+++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~ 391 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSAL 391 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 4679999999999999999999999999999999999999889999999999999864
No 128
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.85 E-value=8.1e-09 Score=75.45 Aligned_cols=47 Identities=34% Similarity=0.484 Sum_probs=43.1
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.+++++.++.++++.|.+++...+||+|++|+++|+++..|++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~ 48 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA 48 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHh
Confidence 56789999999999999999999999999988999999999999864
No 129
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.85 E-value=9.5e-09 Score=75.60 Aligned_cols=48 Identities=33% Similarity=0.477 Sum_probs=44.3
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++..+++++++.++++.|.+++...+||+|++|+++|+++..|++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKA 49 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHH
Confidence 567889999999999999999999999999988999999999999865
No 130
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.83 E-value=9.4e-09 Score=75.36 Aligned_cols=48 Identities=31% Similarity=0.496 Sum_probs=43.7
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++..++++.++.++++.|.+.+...+||+|++|+++|+++..|++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~ 49 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQA 49 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHH
Confidence 456789999999999999999899999999988999999999999874
No 131
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.82 E-value=1.7e-08 Score=74.66 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=43.1
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~ 48 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSY 48 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHh
Confidence 46788999999999999999999999999988999999999999875
No 132
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.7e-09 Score=93.92 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=52.2
Q ss_pred CccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256 108 DSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 165 (270)
Q Consensus 108 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~ 165 (270)
...+|+|+|.| ++..++.+++.+++.+.+.+....++|+..++ ++++|++..+|+++.
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~ 258 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRL 258 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHH
Confidence 35689999998 67899999999999999999999999999755 679999999999997
No 133
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.82 E-value=8.9e-09 Score=77.99 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=43.5
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
.+.++++++++.++++.|.++++..+||+|++|+++|+++..|+++.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~ 48 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGL 48 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhh
Confidence 46789999999999999999999999999988999999999999885
No 134
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.82 E-value=6.5e-09 Score=77.03 Aligned_cols=110 Identities=17% Similarity=0.255 Sum_probs=71.3
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCC
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPN 198 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (270)
.+.++++++++.++++.|.+.+...+||+|++|+++|+++.+|+++...... .....+.+. +. .....+.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~-~~~~~v~~~----~~---~~~~~v~~- 73 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGL-SLDDPVSEV----MN---RNPITAKV- 73 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCC-CcCCCHHHh----hc---CCCEEEcC-
Confidence 4567899999999999999989999999998899999999999987533111 111112111 10 01111111
Q ss_pred CCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHH
Q 024256 199 DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIE 262 (270)
Q Consensus 199 ~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~ 262 (270)
..+..++.+.+... ... .++|+|++|++ +|++|.+|+++
T Consensus 74 ---~~~l~~~~~~~~~~----------~~~--------~~~Vv~~~~~~----~Gvit~~di~~ 112 (113)
T cd04607 74 ---GSSREEILALMRER----------SIR--------HLPILDEEGRV----VGLATLDDLLS 112 (113)
T ss_pred ---CCCHHHHHHHHHHC----------CCC--------EEEEECCCCCE----EEEEEhHHhcc
Confidence 12333444444211 111 37799999999 99999999975
No 135
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.81 E-value=1.6e-08 Score=76.65 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=42.5
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.++++++++.++++.|.+.+...+||+|++|+++|+++..|+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 4678999999999999999899999999998899999999999986
No 136
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.81 E-value=2.1e-08 Score=73.98 Aligned_cols=48 Identities=25% Similarity=0.254 Sum_probs=43.8
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.+++++.++.++++.|.+.+...+||+|++|+++|+++..|+++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~ 49 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAV 49 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHH
Confidence 567899999999999999998999999999889999999999998753
No 137
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.81 E-value=1.1e-08 Score=75.96 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=42.1
Q ss_pred CCeeecCCCCHHHHHHHhHhCC-CCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGK-FLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~-~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.++++.|.+++ ...+||+|++|+++|+++..||+..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 49 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAI 49 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHH
Confidence 5678999999999999997665 7899999988999999999999976
No 138
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.79 E-value=1.3e-08 Score=74.77 Aligned_cols=106 Identities=13% Similarity=0.225 Sum_probs=70.9
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCC
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSP 197 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (270)
.++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|++.. ....++.+ .+. .....+..
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~------~~~~~v~~----~~~---~~~~~v~~ 68 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK------DPDTTIEK----VMT---KNPITVNP 68 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc------cccccHHH----Hhc---CCCeEECC
Confidence 367889999999999999999888899999988999999999999853 11111111 110 01111111
Q ss_pred CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHH
Q 024256 198 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIE 262 (270)
Q Consensus 198 ~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~ 262 (270)
..+..++.+.+.. +... .++|+|++|++ +|++|.+|+++
T Consensus 69 ----~~~l~~~~~~~~~----------~~~~--------~~~Vv~~~~~~----~G~it~~di~~ 107 (108)
T cd04596 69 ----KTSVASVAHMMIW----------EGIE--------MLPVVDDNKKL----LGIISRQDVLK 107 (108)
T ss_pred ----CCCHHHHHHHHHH----------cCCC--------eeeEEcCCCCE----EEEEEHHHhhc
Confidence 1233444444421 1112 27799999999 99999999986
No 139
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.79 E-value=5.9e-08 Score=72.78 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=43.3
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 167 (270)
++.++++++++.++++.|.+.+++.+||+|+ |+++|+++..|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~ 49 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAIS 49 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHH
Confidence 5678999999999999999999999999996 99999999999987643
No 140
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.78 E-value=1.6e-08 Score=76.10 Aligned_cols=48 Identities=31% Similarity=0.477 Sum_probs=43.5
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~~ 166 (270)
++.+++++.++.+++++|.+.+...+||+|++ |+++|+|+..|++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~ 50 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYL 50 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHh
Confidence 56788999999999999999998999999987 9999999999999753
No 141
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.78 E-value=1.7e-08 Score=77.75 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~ 49 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAE 49 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHh
Confidence 467799999999999999999999999999889999999999999863
No 142
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.76 E-value=1.9e-08 Score=93.57 Aligned_cols=120 Identities=18% Similarity=0.285 Sum_probs=82.5
Q ss_pred cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 024256 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFW 189 (270)
Q Consensus 110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (270)
..++++|.+++.++++++++.++++.|.+++++.+||+|++++++|+||.+|+... ......+.+ .+. .
T Consensus 87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~-----~~~~~~V~d----im~--~ 155 (486)
T PRK05567 87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFE-----TDLSQPVSE----VMT--K 155 (486)
T ss_pred hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhc-----ccCCCcHHH----HcC--C
Confidence 35778899999999999999999999999999999999988999999999999753 111111111 110 0
Q ss_pred HHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 190 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 190 ~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
..+..+.. ..+..++...+... ... .++|+|++|++ +|++|.+||++.+.+
T Consensus 156 ~~~v~v~~----~~sl~eal~~m~~~----------~~~--------~lpVVDe~g~l----vGiIT~~DLl~~~~~ 206 (486)
T PRK05567 156 ERLVTVPE----GTTLEEALELLHEH----------RIE--------KLPVVDDNGRL----KGLITVKDIEKAEEF 206 (486)
T ss_pred CCCEEECC----CCCHHHHHHHHHHc----------CCC--------EEEEEcCCCcE----EEEEEhHHhhhhhhC
Confidence 01111111 12333444433111 111 37899999999 999999999998754
No 143
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.76 E-value=1.7e-08 Score=93.13 Aligned_cols=157 Identities=11% Similarity=0.122 Sum_probs=97.5
Q ss_pred ECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhH
Q 024256 58 ISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMH 137 (270)
Q Consensus 58 v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~ 137 (270)
-.+-+|+.+..--..=.+.+.+-|++.+. +..+.. ..+. ..++.++|.++++++++++++.++++.|.
T Consensus 48 sa~mdtvTe~~MAi~~A~~GGigvIh~n~-----~i~~qa-e~v~------~VKv~eim~~~pvtv~p~~tI~eA~~lm~ 115 (475)
T TIGR01303 48 VANMTAVAGRRMAETVARRGGIVILPQDL-----PIPAVK-QTVA------FVKSRDLVLDTPITLAPHDTVSDAMALIH 115 (475)
T ss_pred eccchhhHHHHHHHHHHHCCCEEEEeCCC-----CHHHHH-HHHh------hcchhhccccCCeEECCCCCHHHHHHHHH
Confidence 34455555443322223456777777543 233332 2221 24667889999999999999999999999
Q ss_pred hCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCC
Q 024256 138 DGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGA 217 (270)
Q Consensus 138 ~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~ 217 (270)
+++.+.+||+| +++++|+||.+|+... .....+.+ .+. ..+..+. ...+..+....+....
T Consensus 116 ~~~~~~~vVvD-~gklvGIVT~rDL~~~------~~~~~V~d----IMt---~~litv~----~~~sL~eAl~lM~~~~- 176 (475)
T TIGR01303 116 KRAHGAAVVIL-EDRPVGLVTDSDLLGV------DRFTQVRD----IMS---TDLVTAP----ADTEPRKAFDLLEHAP- 176 (475)
T ss_pred hcCCeEEEEEE-CCEEEEEEEHHHhhcC------CCCCCHHH----Hcc---CCceEeC----CCCcHHHHHHHHHHcC-
Confidence 99999999998 5799999999998532 11111221 111 1111111 1133444444442111
Q ss_pred CccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 218 DTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 218 ~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
.. .++|+|++|++ +|+||++||++...+
T Consensus 177 ---------i~--------~LPVVD~~g~L----vGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 177 ---------RD--------VAPLVDADGTL----AGILTRTGALRATIY 204 (475)
T ss_pred ---------CC--------EEEEEcCCCeE----EEEEEHHHHHHHHhC
Confidence 11 37899999999 999999999987654
No 144
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.76 E-value=3.7e-08 Score=72.57 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=43.9
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.+++++.++.++++.|.+.+.+.+||+|++++++|+++..|+++..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~ 49 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKV 49 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHH
Confidence 467889999999999999999999999999889999999999999864
No 145
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.76 E-value=9.5e-09 Score=77.08 Aligned_cols=47 Identities=28% Similarity=0.549 Sum_probs=43.4
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 56789999999999999998889999999988999999999999874
No 146
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.76 E-value=3e-08 Score=74.34 Aligned_cols=48 Identities=29% Similarity=0.465 Sum_probs=44.0
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.++.+++++.++++.|.+.+++.+||++++|+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAA 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHh
Confidence 467899999999999999999999999999889999999999999763
No 147
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.76 E-value=1.9e-08 Score=92.50 Aligned_cols=122 Identities=12% Similarity=0.197 Sum_probs=103.1
Q ss_pred CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--C----CEEEEEeeHHHHHHHHHhcCCCC-------
Q 024256 41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--E----NKPRGILTSKDILMRVISQNLPA------- 107 (270)
Q Consensus 41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~----~~~~Givt~~dl~~~~~~~~~~~------- 107 (270)
.+.+++++|. +++++++.-..+....+.++...++.+||+| . +++.|+|-+..++ .++.+....
T Consensus 580 r~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~~~ 656 (762)
T KOG0474|consen 580 RNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRSTF 656 (762)
T ss_pred hhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCcccc
Confidence 4457899999 6899999999999999999999999999998 2 4788999999887 444321000
Q ss_pred -------------------------------CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEE
Q 024256 108 -------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV 156 (270)
Q Consensus 108 -------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Gi 156 (270)
.-..+..+|.+.|+++++++++..++.+|+.-+.+++.|++..++.+|+
T Consensus 657 ~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi 736 (762)
T KOG0474|consen 657 DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI 736 (762)
T ss_pred CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence 0134567788999999999999999999999999999999988899999
Q ss_pred EeHHHHHHH
Q 024256 157 VDVIHITHA 165 (270)
Q Consensus 157 vt~~dll~~ 165 (270)
+|++|+..+
T Consensus 737 lTR~D~~~~ 745 (762)
T KOG0474|consen 737 LTRKDLARY 745 (762)
T ss_pred EehhhhhhH
Confidence 999999976
No 148
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.75 E-value=1.1e-07 Score=69.89 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=43.2
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.++++++++.++++.|.+.+...+||+|++|+++|+++..|+.+..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRAL 49 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHH
Confidence 466789999999999999988889999999889999999999998753
No 149
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.74 E-value=2.4e-08 Score=73.83 Aligned_cols=49 Identities=24% Similarity=0.343 Sum_probs=44.2
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 167 (270)
++.++++++++.++++.|.+.+...+||+|++|+++|+++..|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL 50 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence 5678999999999999999888889999998899999999999997643
No 150
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.74 E-value=4.1e-08 Score=72.50 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=71.7
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCC
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPN 198 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (270)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..++++..............+ .+.. ....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~----~~~~---~~~~v~-- 73 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVAD----VMTR---NPKTID-- 73 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHH----hhcc---CCeEEC--
Confidence 4567899999999999999888899999998899999999999997643221100011111 1100 111111
Q ss_pred CCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHH
Q 024256 199 DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIE 262 (270)
Q Consensus 199 ~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~ 262 (270)
...+..++.+.+.. .+. ..+.|+|++|++ +|++|..||++
T Consensus 74 --~~~~~~~~~~~~~~----------~~~--------~~~~Vv~~~~~~----iG~it~~di~~ 113 (114)
T cd04604 74 --PDALAAEALELMEE----------NKI--------TALPVVDDNGRP----VGVLHIHDLLR 113 (114)
T ss_pred --CCCcHHHHHHHHHH----------cCC--------CEEEEECCCCCE----EEEEEHHHhhc
Confidence 11334444444421 111 137899989999 99999999975
No 151
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.72 E-value=4.1e-08 Score=72.85 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=39.7
Q ss_pred CCeeecCCCCHHHHHHHhHhCC-CCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGK-FLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~-~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.+++++.++.++++.|.+++ ...+||+| +|+++|+++..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~ 48 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRL 48 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHH
Confidence 4667899999999999998887 56777777 6899999999999975
No 152
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.72 E-value=5.6e-08 Score=71.73 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=42.3
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++.++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~ 47 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVR 47 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHH
Confidence 35678999999999999999999999999997 999999999999743
No 153
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.72 E-value=5.3e-08 Score=71.55 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=42.9
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++.++++++++.++++.|.+++++.+||+|+ |+++|+++..|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~ 47 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHA 47 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHH
Confidence 35678999999999999999999999999997 999999999999975
No 154
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.71 E-value=1.8e-08 Score=74.19 Aligned_cols=103 Identities=21% Similarity=0.384 Sum_probs=65.7
Q ss_pred ecCCCCHHHHHHHhHhCC-----CCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCC
Q 024256 123 ATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSP 197 (270)
Q Consensus 123 v~~~~~l~~a~~~~~~~~-----~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (270)
+++++++.++++.|.+++ +..+||+|++|+++|+++.+|+++. ....++.+ .+. .....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~------~~~~~v~~----~~~---~~~~~i~~ 68 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA------DPDTPVSD----IMD---TDVISVSA 68 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC------CCcchHHH----HhC---CCCeEEcC
Confidence 578899999999998776 4689999988999999999999862 11111111 110 01111110
Q ss_pred CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhh
Q 024256 198 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVT 264 (270)
Q Consensus 198 ~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i 264 (270)
..+..+....+... ....++|+|++|++ +|++|.+|+++++
T Consensus 69 ----~~~~~~~~~~~~~~------------------~~~~~~Vv~~~~~~----~Gvit~~dll~~~ 109 (109)
T cd04606 69 ----DDDQEEVARLFEKY------------------DLLALPVVDEEGRL----VGIITVDDVIDVI 109 (109)
T ss_pred ----CCCHHHHHHHHHHc------------------CCceeeeECCCCcE----EEEEEhHHhhhhC
Confidence 12333344433111 11137899999999 9999999999864
No 155
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.71 E-value=5e-08 Score=71.50 Aligned_cols=47 Identities=28% Similarity=0.370 Sum_probs=42.9
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~ 48 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDAL 48 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHH
Confidence 4678899999999999999999999999997 9999999999999863
No 156
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.70 E-value=2.7e-08 Score=76.30 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=44.4
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++.++++++++.++++.|.+.+..++||+|++|+++|+++..|+++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~ 49 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRR 49 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHH
Confidence 567889999999999999999999999999988999999999999875
No 157
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.70 E-value=5.5e-08 Score=72.57 Aligned_cols=46 Identities=39% Similarity=0.619 Sum_probs=42.5
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.+++++.++.++++.|.+.+...+||+|+ |+++|+++..|++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~ 47 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLA 47 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHh
Confidence 5678999999999999999999999999997 999999999999975
No 158
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.69 E-value=4.1e-08 Score=91.29 Aligned_cols=116 Identities=10% Similarity=0.138 Sum_probs=78.8
Q ss_pred ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Q 024256 115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDS 191 (270)
Q Consensus 115 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (270)
.|.++++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+|+... .....++.+ .+... ..
T Consensus 105 gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v-----~~~~~~V~e----IMt~~-~~ 174 (505)
T PLN02274 105 GFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFV-----NDRETKLSE----VMTSD-DD 174 (505)
T ss_pred cccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhc-----cccCCcHHH----HhccC-CC
Confidence 36789999999999999999999999999999996 3799999999999653 111111221 11100 00
Q ss_pred hhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 192 AMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 192 ~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
+..+. ...+..+..+.+..... . .++|+|++|++ +|+||++||++.+++
T Consensus 175 lvtv~----~~~sL~eAl~~m~~~~~----------~--------~LPVVD~~g~L----vGvITr~DIlk~~~~ 223 (505)
T PLN02274 175 LVTAP----AGIDLEEAEAVLKDSKK----------G--------KLPLVNEDGEL----VDLVTRTDVKRVKGY 223 (505)
T ss_pred cEEEC----CCCCHHHHHHHHHHcCC----------C--------EEEEEcCCCeE----EEEEEHHHHHHHhhC
Confidence 11111 11334444444422111 1 37899999999 999999999999876
No 159
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.68 E-value=5.9e-08 Score=88.53 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=84.6
Q ss_pred cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 024256 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFW 189 (270)
Q Consensus 110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (270)
..+.++++.++++++++.++.+|...|.+.+.+.+.++++++...||||.+|+...++....+...+
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~------------- 215 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQK------------- 215 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccc-------------
Confidence 5788999999999999999999999999999999999999999999999999999855432221111
Q ss_pred HHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCce------------eEEeecCCCCeeEeecCCCCh
Q 024256 190 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAF------------AFKVQDNKGLMHRFTCGMLPF 257 (270)
Q Consensus 190 ~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------~~~VvD~~g~l~~~~vGivs~ 257 (270)
.++.|+.|+.+....... ..-+|-++|++ +||||.
T Consensus 216 -----------------------------V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~----~Gilt~ 262 (610)
T COG2905 216 -----------------------------VSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQP----LGILTL 262 (610)
T ss_pred -----------------------------hhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecCCee----eEEeeH
Confidence 134456666663222211 11166678999 999999
Q ss_pred HHHHHhhhh
Q 024256 258 PNFIEVTNY 266 (270)
Q Consensus 258 ~Dil~~i~~ 266 (270)
.||++...+
T Consensus 263 ~dIl~l~s~ 271 (610)
T COG2905 263 TDILRLFSQ 271 (610)
T ss_pred HHHHHhhCC
Confidence 999987654
No 160
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.68 E-value=4.5e-08 Score=74.70 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=44.0
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|++...
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~ 49 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKI 49 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHH
Confidence 567899999999999999988899999999889999999999999764
No 161
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.68 E-value=3.1e-08 Score=73.54 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=41.6
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITH 164 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~ 164 (270)
++.++++++++.++++.|.+++...+||+|+ +|+++|+++..|++.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 5678899999999999999888899999997 689999999999874
No 162
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.68 E-value=1.4e-07 Score=68.71 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=44.1
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 167 (270)
++.+++++.++.++++.|.+.+...+||+|++++++|+++..|++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~ 50 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALA 50 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHH
Confidence 4677899999999999999988899999998899999999999998643
No 163
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.68 E-value=6.6e-08 Score=71.35 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=42.2
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.++++++++.++++.|.+++.+.+||+++ |+++|+++..|++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~ 48 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRV 48 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence 5678999999999999999888899999996 9999999999998653
No 164
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.67 E-value=7.6e-08 Score=70.70 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=42.3
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++.++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~ 48 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLL 48 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHH
Confidence 4567999999999999999888899999986 9999999999998763
No 165
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.67 E-value=3.5e-08 Score=72.42 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=70.6
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCC
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSP 197 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (270)
+++..++++.++.++++.|.+.+...+||+|++|+++|+++..+++.. .....++.+. +. .....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~-----~~~~~~v~~~----~~---~~~~~~~~ 69 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE-----TDLDKPVSEV----MT---PENLLTTV 69 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec-----ccCCCCHHHh----cc---cCceEEec
Confidence 456789999999999999998899999999988999999999998743 1111121111 10 00111111
Q ss_pred CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHH
Q 024256 198 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIE 262 (270)
Q Consensus 198 ~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~ 262 (270)
. ..+..++++.+.... .. .+.|+|++|++ +|++|++|+++
T Consensus 70 ~---~~~l~~~~~~~~~~~----------~~--------~~~Vv~~~~~~----~Gvi~~~dil~ 109 (110)
T cd04601 70 E---GTSLEEALELLHEHK----------IE--------KLPVVDDEGKL----KGLITVKDIEK 109 (110)
T ss_pred C---CCCHHHHHHHHHHhC----------CC--------eeeEEcCCCCE----EEEEEhhhhhc
Confidence 0 123344444442111 11 26799999999 99999999985
No 166
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.67 E-value=6.7e-08 Score=71.31 Aligned_cols=47 Identities=28% Similarity=0.434 Sum_probs=43.3
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~ 48 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI 48 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHH
Confidence 56789999999999999999899999999988999999999999875
No 167
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.66 E-value=1e-07 Score=72.24 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=43.3
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++..+++++++.+++++|.+.+.+.+||+|++|+++|++|..|+...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~ 48 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDF 48 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHH
Confidence 45678999999999999999999999999988999999999999875
No 168
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.66 E-value=7e-08 Score=70.44 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=40.4
Q ss_pred eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
.++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA 47 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence 46899999999999999999999999997 999999999999863
No 169
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.66 E-value=7.8e-08 Score=70.65 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=43.1
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++.++++++++.++++.|.+.+...+||+|+ |+++|+++..|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~ 47 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRV 47 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHH
Confidence 46788999999999999999988999999997 999999999999875
No 170
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.65 E-value=1.1e-07 Score=70.13 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=41.9
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++++++++.++.++++.|.+.+...+||+|+ |++.|+++..|++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDA 47 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHH
Confidence 4678899999999999999988899999997 899999999999875
No 171
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.64 E-value=1.1e-07 Score=69.98 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=42.6
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++.+++++.++.++.+.|.+.+.+.+||+|+ |+++|+++..|++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~ 47 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNR 47 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHH
Confidence 35678999999999999999988899999996 999999999999875
No 172
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.64 E-value=1.1e-07 Score=69.89 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=42.9
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+++.+++.+.++.++.+.|.+.+...+||+|+ |+++|+++..|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~ 48 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKA 48 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHH
Confidence 46778999999999999999888899999997 999999999999875
No 173
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.63 E-value=4.7e-08 Score=72.03 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=43.2
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDL 48 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHH
Confidence 46789999999999999999999999999988999999999999875
No 174
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.61 E-value=6.9e-08 Score=89.73 Aligned_cols=120 Identities=12% Similarity=0.198 Sum_probs=80.1
Q ss_pred chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC---CcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 024256 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQK 187 (270)
Q Consensus 111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 187 (270)
...+.|..+++++++++++.+++++|.+++++.+||+|++ ++++|+||.+|+... ......+.+ .+..
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-----~~~~~~V~d----iMt~ 167 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-----KDKSTPVSE----VMTP 167 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-----ccCCCCHHH----hhCC
Confidence 4556788899999999999999999999999999999963 799999999999742 111112221 1100
Q ss_pred HHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 188 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 188 ~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
...+..+. ...+..+..+.+...... .++|+|++|++ +|+||++||++...+
T Consensus 168 -~~~lvtv~----~~~sl~eAl~lm~e~~i~------------------~LPVVd~~g~l----iGIIT~~DIl~~~~~ 219 (495)
T PTZ00314 168 -REKLVVGN----TPISLEEANEVLRESRKG------------------KLPIVNDNGEL----VALVSRSDLKKNRGY 219 (495)
T ss_pred -cCCceEeC----CCCCHHHHHHHHHHcCCC------------------eEEEEcCCCcE----EEEEEehHhhhcccC
Confidence 00111111 113334444444221111 37899999999 999999999988654
No 175
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.60 E-value=4.1e-08 Score=91.21 Aligned_cols=119 Identities=11% Similarity=0.124 Sum_probs=76.7
Q ss_pred chhhccC---CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHH
Q 024256 111 LVEKVMT---PNPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTM 184 (270)
Q Consensus 111 ~v~~im~---~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~ 184 (270)
.++++|. ..++++++++++.+|++.|.+++.+.+||+|+ +|+++|+||..|+... ......++.+ .
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~----~~~~~~~V~d----I 166 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS----RMSLDTKVKD----F 166 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc----ccCCCCCHHH----H
Confidence 4555654 34568999999999999999999999999996 5899999999998642 0011111111 1
Q ss_pred HHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhh
Q 024256 185 MQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVT 264 (270)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i 264 (270)
+... ..++.+.+ ..+..+..+.+.... .. .++|+|++|++ +|+||.+|+++.-
T Consensus 167 Mt~~-~~~itv~~----d~~l~eAl~lM~e~~----------i~--------~LPVVD~~g~L----vGIIT~~Dilk~~ 219 (502)
T PRK07107 167 MTPF-EKLVTANE----GTTLKEANDIIWDHK----------LN--------TLPIVDKNGNL----VYLVFRKDYDSHK 219 (502)
T ss_pred hCCC-CCeEEECC----CCcHHHHHHHHHHcC----------CC--------EEEEEcCCCeE----EEEEEhHHHHhcc
Confidence 1000 01111111 133444444442211 11 38899999999 9999999999864
No 176
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.58 E-value=1.1e-07 Score=71.03 Aligned_cols=47 Identities=36% Similarity=0.533 Sum_probs=43.1
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.+++++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+...
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDA 48 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHH
Confidence 56789999999999999999998999999988999999999999865
No 177
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.58 E-value=9.1e-08 Score=69.61 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=41.7
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.++++.|.+++...+||+| +|+++|+++..|+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~ 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc
Confidence 567899999999999999988889999998 6999999999999863
No 178
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.56 E-value=1.2e-07 Score=69.16 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=41.7
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
+++++++.+.++.++++.|.+.+...+||+|+ ++++|+++..||+.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~ 47 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG 47 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 46778999999999999999888889999996 99999999999985
No 179
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=3e-07 Score=68.73 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=42.2
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.++++.|.+.+...+||+|+ |+++|+++..|++..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~ 47 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADA 47 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHh
Confidence 5678999999999999999989999999996 999999999999875
No 180
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.53 E-value=9.8e-08 Score=82.12 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=52.1
Q ss_pred cchhhccCCC-CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 110 TLVEKVMTPN-PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 110 ~~v~~im~~~-~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
.+++++|.++ +.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~ 211 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRA 211 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHH
Confidence 5788999888 9999999999999999999899999999988999999999999874
No 181
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.52 E-value=6.5e-08 Score=91.55 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=101.6
Q ss_pred CCCCCCh-hHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 024256 23 GTSISGP-NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 100 (270)
Q Consensus 23 g~~~~~~-~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~ 100 (270)
|+.++.. .+..+.........+|+++|+. ++++++++++++.++.+.|.+++++.+||++ +|+++|+++..|++ +.
T Consensus 225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~-~~ 302 (546)
T PRK14869 225 GVTVISTPYDTFTTARLINQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLL-SP 302 (546)
T ss_pred CCeEEEecccHHHHHHHhhcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhh-cc
Confidence 4444332 2344444444456789999983 4799999999999999999999999999999 89999999999998 43
Q ss_pred Hhc---------------CCCC-------CccchhhccCCCCeee---cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEE
Q 024256 101 ISQ---------------NLPA-------DSTLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD 155 (270)
Q Consensus 101 ~~~---------------~~~~-------~~~~v~~im~~~~~~v---~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~G 155 (270)
... +... +..+++++|+..++.+ +...+..-+.++|.+.++...|++. ..-+.|
T Consensus 303 ~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~g 381 (546)
T PRK14869 303 VRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAA 381 (546)
T ss_pred ccCceEEEcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Confidence 321 0000 1124567777766544 3456777889999999988888876 456889
Q ss_pred EEeHHHHHHH
Q 024256 156 VVDVIHITHA 165 (270)
Q Consensus 156 ivt~~dll~~ 165 (270)
|++-++.+++
T Consensus 382 IlsDT~~f~~ 391 (546)
T PRK14869 382 ILSDTLLFKS 391 (546)
T ss_pred HHHHhcCccC
Confidence 9988887764
No 182
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.52 E-value=3.7e-07 Score=67.24 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=42.6
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 167 (270)
++.+++++.++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~ 49 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVV 49 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHh
Confidence 5677899999999999999988999999995 59999999999998643
No 183
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.49 E-value=4.3e-07 Score=67.27 Aligned_cols=53 Identities=32% Similarity=0.463 Sum_probs=47.2
Q ss_pred hccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256 114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167 (270)
Q Consensus 114 ~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 167 (270)
+.|.+.+.++.++.++.+|+..|.++++..+||++ .++++|++|.+|++++..
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~ 55 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALA 55 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHh
Confidence 34557889999999999999999999999999998 458999999999999844
No 184
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.49 E-value=3.6e-07 Score=68.09 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=41.4
Q ss_pred CCeeecCCCCHHHHHHHhHhCC-CCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGK-FLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~-~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
++.++++++++.++++.|...+ .+.+||+|+ |+++|+++..|++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~ 48 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMEL 48 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHH
Confidence 4567899999999999998876 889999998 999999999999865
No 185
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.49 E-value=3.6e-07 Score=68.05 Aligned_cols=55 Identities=29% Similarity=0.579 Sum_probs=51.5
Q ss_pred cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
.++.++|.+++.++++++++.++++.|.+.+...+||+|++|+++|+|+..||.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5799999999999999999999999999999999999998899999999999864
No 186
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.48 E-value=4.2e-08 Score=80.30 Aligned_cols=90 Identities=9% Similarity=0.159 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCC
Q 024256 63 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGK 140 (270)
Q Consensus 63 tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~ 140 (270)
+-.+.+.+++......+. ....+ ..+..-....+..++++|.| ..++++.+.++.+.+..+.+..
T Consensus 33 nr~eLl~liRdse~n~Li-----------D~dt~--~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesa 99 (293)
T COG4535 33 NREELLELIRDSEQNELI-----------DADTL--DMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESA 99 (293)
T ss_pred CHHHHHHHHHHhhhcccc-----------ChhHH--HHHHHHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhc
Confidence 447778877766544322 21111 22222112224679999988 6789999999999999999999
Q ss_pred CCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256 141 FLHLPVVDRD-GDVVDVVDVIHITHA 165 (270)
Q Consensus 141 ~~~lpVvd~~-g~~~Givt~~dll~~ 165 (270)
.+++||+.++ +.+.||+-.+||+++
T Consensus 100 HSRfPVi~edkD~v~GIL~AKDLL~~ 125 (293)
T COG4535 100 HSRFPVISEDKDHVEGILLAKDLLPF 125 (293)
T ss_pred cccCCcccCCchhhhhhhhHHHHHHH
Confidence 9999999865 679999999999997
No 187
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.44 E-value=1.6e-06 Score=67.17 Aligned_cols=47 Identities=30% Similarity=0.462 Sum_probs=43.2
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
+++++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~ 48 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLL 48 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHH
Confidence 5678999999999999999999999999997 9999999999998764
No 188
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.44 E-value=4.4e-07 Score=66.56 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=42.2
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITHA 165 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~~ 165 (270)
....+++++++.++.+.+.+.+...+||+|+ +|+++|+|+.+|+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~ 52 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVA 52 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHH
Confidence 4567899999999999999988889999997 6899999999999875
No 189
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.36 E-value=1.4e-06 Score=63.53 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=41.6
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~ 164 (270)
++.++.+++++.+++..|.+.+.+.+||++++++++|+++..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~ 47 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLR 47 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHh
Confidence 4567889999999999999888899999998899999999999985
No 190
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.36 E-value=6.9e-06 Score=76.05 Aligned_cols=111 Identities=11% Similarity=0.167 Sum_probs=89.0
Q ss_pred ceeEECCC-CCHHHHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcC----------------------CCC
Q 024256 54 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN----------------------LPA 107 (270)
Q Consensus 54 ~~~~v~~~-~tv~~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~~~~----------------------~~~ 107 (270)
.+.+++.+ +++.+...+|.+..++.+||+- .++++|++.++++...+.... ...
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP 636 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence 35555555 8999999999999999999874 578999999999973333110 001
Q ss_pred CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
.....+++|...|+++...++.+-++++|++-+...+.|.. +|++.|+||.+|+++.
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRH 693 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHh
Confidence 12457888988999999999999999999999998886664 8999999999999985
No 191
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.31 E-value=3.8e-06 Score=64.53 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=45.2
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167 (270)
Q Consensus 119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 167 (270)
++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence 5678999999999999999999999999998899999999999998754
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=9e-06 Score=73.81 Aligned_cols=153 Identities=15% Similarity=0.115 Sum_probs=91.2
Q ss_pred cEEEEEeCCEEEEEeeHHHHHH--------HHHhcCCCCCccchhhccCCCC---eeecCCCCHHHHHHHhHhCCCCEEE
Q 024256 77 SSAVVTVENKPRGILTSKDILM--------RVISQNLPADSTLVEKVMTPNP---ECATIDTPIVDALHIMHDGKFLHLP 145 (270)
Q Consensus 77 ~~i~Vv~~~~~~Givt~~dl~~--------~~~~~~~~~~~~~v~~im~~~~---~~v~~~~~l~~a~~~~~~~~~~~lp 145 (270)
+.+.++++|+++..-+..+++. .++.......-.++.++|.+.+ +...++.+..+++..|...+.+.++
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGY 312 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhCcccHHHHHHHhccccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEE
Confidence 4455555666665555566541 1111111111245667775432 2334667889999999999999999
Q ss_pred EEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccC
Q 024256 146 VVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 225 (270)
Q Consensus 146 Vvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~ 225 (270)
|+|+++++.|+++..++....- ......+. . ......+. ...+.++++..+..
T Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~----~---~~~~~~~~----~~~~~~~~~~~~~~----------- 365 (400)
T PRK10070 313 VIERGNKFVGAVSIDSLKTALT-----QQQGLDAA----L---IDAPLAVD----AQTPLSELLSHVGQ----------- 365 (400)
T ss_pred EEcCCCcEEEEEeHHHHHhhhh-----cCCchhhh----h---ccCCceeC----CCCCHHHHHHHHHh-----------
Confidence 9999999999999999976411 11111110 0 00011111 11333444443311
Q ss_pred CCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhhhc
Q 024256 226 PSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEY 268 (270)
Q Consensus 226 p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~~~ 268 (270)
.....+|+|++|++ +|+||..++++++...-
T Consensus 366 --------~~~~~~v~~~~~~~----~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 366 --------APCAVPVVDEDQQY----VGIISKGMLLRALDREG 396 (400)
T ss_pred --------CCCcEEEECCCCcE----EEEEEHHHHHHHHHhcC
Confidence 11127899999999 99999999999997643
No 193
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.24 E-value=4.3e-06 Score=61.46 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=56.2
Q ss_pred CCChhHHHHHHHHh---hCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHH
Q 024256 26 ISGPNTFIETLRER---MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 97 (270)
Q Consensus 26 ~~~~~~~~~~~~~~---~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~ 97 (270)
..+..+......+. ....++.++|. .++.++.+++++.++++.|.+++...+||+++|+++|++|.+|++
T Consensus 38 ~v~~~dl~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~ 110 (112)
T cd04625 38 LLTFREVLQAMAQHGAGVLDTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVA 110 (112)
T ss_pred EEEHHHHHHHHHhcCCchhcCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence 34555555444321 12357999998 678899999999999999999999999999999999999999986
No 194
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.24 E-value=4.2e-06 Score=62.27 Aligned_cols=53 Identities=30% Similarity=0.415 Sum_probs=49.2
Q ss_pred CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHH
Q 024256 43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 97 (270)
Q Consensus 43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~ 97 (270)
.+++++|. +++.++++++++.++++.|.+++...+||++ +|+++|+++..|+.
T Consensus 58 ~~v~dim~--~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVIN--RKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcC--CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence 56999998 6789999999999999999999999999999 78999999999984
No 195
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.22 E-value=8e-07 Score=76.40 Aligned_cols=148 Identities=19% Similarity=0.262 Sum_probs=113.0
Q ss_pred hhhhhhhHHHHHHHhhhHHhhCCCC----CChhHHHHHHHHhhCC---CCccccccCCCceeE-ECCCCCHHHHHHHHHH
Q 024256 2 ERAAEKGKAIAAAVEGVEKHWGTSI----SGPNTFIETLRERMFR---PSLSTIIPEKSKVVT-ISPTDTVLMATKKMLE 73 (270)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~---~~v~~im~~~~~~~~-v~~~~tv~~a~~~m~~ 73 (270)
+.|..+|..++..+.|-.-+.|.+. .+.++|+..+.+.+.. .+..++|.+ .+... -.+...-..+++.+.+
T Consensus 226 dEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~ 304 (386)
T COG4175 226 DEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRD 304 (386)
T ss_pred HHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhh
Confidence 5678888888888988777777542 4456888888765533 357999985 33332 2334445678888888
Q ss_pred CCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCc
Q 024256 74 LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 152 (270)
Q Consensus 74 ~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~ 152 (270)
...+.+.+++ .++.+|+++..+.. . . .+.+++.++..++++.+.+....+... .+||+|++|+
T Consensus 305 ~~~~~~~~~~~~~~~~g~v~~~~~~-~----------~----~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r 368 (386)
T COG4175 305 EGREYGYAVDRGNKFVGVVSIDSLV-K----------A----ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGR 368 (386)
T ss_pred ccchhhHHHhccCceeeEEeccchh-c----------c----cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCc
Confidence 8777777777 77899999998875 1 1 455678889999999999999887764 6789999999
Q ss_pred EEEEEeHHHHHHHH
Q 024256 153 VVDVVDVIHITHAA 166 (270)
Q Consensus 153 ~~Givt~~dll~~~ 166 (270)
++|+++...++.++
T Consensus 369 ~vG~i~~~~vl~aL 382 (386)
T COG4175 369 YVGIISRGELLEAL 382 (386)
T ss_pred EEEEecHHHHHHHH
Confidence 99999999999874
No 196
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.19 E-value=3.1e-05 Score=69.51 Aligned_cols=151 Identities=22% Similarity=0.236 Sum_probs=91.7
Q ss_pred cEEEEEeCCEEEEEeeHHHHHHH--------HHhcCCC---CCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEE
Q 024256 77 SSAVVTVENKPRGILTSKDILMR--------VISQNLP---ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 145 (270)
Q Consensus 77 ~~i~Vv~~~~~~Givt~~dl~~~--------~~~~~~~---~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lp 145 (270)
+.+.+.++|+++..-+..+++.+ ++..... .....+.+.|........++.+..++++.|...+.+.+.
T Consensus 198 drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (363)
T TIGR01186 198 DRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLY 277 (363)
T ss_pred CEEEEEeCCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCceEE
Confidence 56777778888877787777521 1111000 001122223333444566777899999999999999999
Q ss_pred EEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccC
Q 024256 146 VVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY 225 (270)
Q Consensus 146 Vvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~ 225 (270)
|+|+++++.|+++..++..+.-. .....+. . ......+. ...+.++++..+..
T Consensus 278 ~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~----~---~~~~~~~~----~~~~~~~~~~~~~~----------- 330 (363)
T TIGR01186 278 VVDRQNKLVGVVDVESIKQARKK-----AQGLQDV----L---IDDIYTVD----AGTLLRETVRKVLK----------- 330 (363)
T ss_pred EEcCCCCEEEEEeHHHHHHHhhc-----CCchhhh----h---ccCCceEC----CCCcHHHHHHHHHh-----------
Confidence 99999999999999998865211 0111110 0 00011111 11334444444411
Q ss_pred CCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 226 PSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 226 p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
.....+|+|++|++ +|+||..++++++..
T Consensus 331 --------~~~~~~v~~~~~~~----~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 331 --------AGIKVPVVDEDQRL----VGIVTRGSLVDALYD 359 (363)
T ss_pred --------CCCCEEEECCCCcE----EEEEEHHHHHHHHHh
Confidence 11127899999999 999999999999865
No 197
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.09 E-value=1.3e-05 Score=48.83 Aligned_cols=46 Identities=30% Similarity=0.472 Sum_probs=41.9
Q ss_pred CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
+.++++++++.++++.|.+.+.+.+||++++++++|+++..++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 5678999999999999999999999999987899999999999764
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.83 E-value=7.2e-05 Score=45.42 Aligned_cols=43 Identities=35% Similarity=0.423 Sum_probs=39.9
Q ss_pred eeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHH
Q 024256 55 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 97 (270)
Q Consensus 55 ~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~ 97 (270)
++++.+++++.++++.|.+.+...+||++ +++++|+++..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~ 45 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDII 45 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHH
Confidence 57789999999999999999999999999 68999999999996
No 199
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.33 E-value=0.0012 Score=59.74 Aligned_cols=105 Identities=18% Similarity=0.130 Sum_probs=73.4
Q ss_pred CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeee
Q 024256 44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA 123 (270)
Q Consensus 44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v 123 (270)
+..++|.+ ....... +.. .+++. ++.+.+.|++. |+++..+.. .+.... ....+.+ +.....++
T Consensus 275 ~a~~~m~~--~~~~~~~-~~~-~~~~~---~~~~~~~~~~~----~~~~~~~~~-~~~~~~---~~~~~~~-~~~~~~~~ 338 (382)
T TIGR03415 275 TARSLMRP--LTDLEHV-DGG-WCVSD---RRDTWLFTIDK----QVRRRDAKL-PVQAWA---AEQEVES-LEAAPTVI 338 (382)
T ss_pred eHHHHhcc--ccccccc-Ccc-hhhhh---cccceeEeecc----ceecccchH-hHhhcc---cccchhh-hcccCccc
Confidence 56888863 2222222 223 44444 67888888877 788877764 433311 1234666 55678889
Q ss_pred cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256 124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166 (270)
Q Consensus 124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 166 (270)
++++++.+++..+.+.+. -+||+|+ |+++|+|+..+++.++
T Consensus 339 ~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 339 NPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred CCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHH
Confidence 999999999999988765 5788885 9999999999999863
No 200
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0011 Score=57.50 Aligned_cols=101 Identities=17% Similarity=0.056 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHH--------HHHHhcCCCCCccchhhccCC--CCeeecCCCCH
Q 024256 60 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQNLPADSTLVEKVMTP--NPECATIDTPI 129 (270)
Q Consensus 60 ~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~--------~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l 129 (270)
-+..+.||+++ -+++.+..+|+++-+=|..+|+ +.++.+-....-.+.+++|.+ ....-.+....
T Consensus 221 itHDLdEAlri-----G~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~ 295 (386)
T COG4175 221 ITHDLDEALRI-----GDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGP 295 (386)
T ss_pred EecCHHHHHhc-----cceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhccccccccccccccc
Confidence 35667777776 2678888899999999999987 122222111222467888874 22222233344
Q ss_pred HHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 130 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 130 ~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
..++..+.+...+.+.+++..++.+|+++..++...
T Consensus 296 ~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~ 331 (386)
T COG4175 296 RVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA 331 (386)
T ss_pred chhhhhhhhccchhhHHHhccCceeeEEeccchhcc
Confidence 567888888887788888877789999999888764
No 201
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0062 Score=51.44 Aligned_cols=103 Identities=19% Similarity=0.072 Sum_probs=71.2
Q ss_pred ECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHH--------HHHHhcC----CCCCccchhhccCCCC----e
Q 024256 58 ISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQN----LPADSTLVEKVMTPNP----E 121 (270)
Q Consensus 58 v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~--------~~~~~~~----~~~~~~~v~~im~~~~----~ 121 (270)
+.-+..+.||+++ -+.+.|.++|+++-+=++.+++ +.++..+ .......+.+.|.+.. -
T Consensus 190 vfVTHDidEA~kL-----adri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 264 (309)
T COG1125 190 VFVTHDIDEALKL-----ADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGE 264 (309)
T ss_pred EEEecCHHHHHhh-----hceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCC
Confidence 3345677888887 3678889999999999987776 2222211 1112345555554422 1
Q ss_pred eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
.+.......+++..+...+...+||+|++|+++|.+|..+|+..
T Consensus 265 ~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 265 PLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 23344455668888888899999999999999999999999864
No 202
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00046 Score=61.24 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=71.7
Q ss_pred CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhc
Q 024256 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMA 194 (270)
Q Consensus 118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (270)
.+|+++.|+.++.++++....+++..+||..+ .++++|+||.+|+-.. ++....+++ ++. ...+
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-----~~~~~~~~~----vmt----~~~~ 182 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-----EDNSLLVSD----VMT----KNPV 182 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----hcccchhhh----hcc----cccc
Confidence 36778999999999999999999999999963 2589999999998753 222222221 110 0001
Q ss_pred cCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhh
Q 024256 195 LSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTN 265 (270)
Q Consensus 195 ~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~ 265 (270)
.. ..+++..+....+....-- -++|||++|.+ |-++++.|+.++-.
T Consensus 183 ~~---~~gi~l~~~neiL~~~kkG------------------kl~iv~~~gel----va~~~rtDl~k~~~ 228 (503)
T KOG2550|consen 183 TG---AQGITLKEANEILKKIKKG------------------KLPVVDDKGEL----VAMLSRTDLMKNRD 228 (503)
T ss_pred cc---cccccHHHHHHHHHhhhcC------------------CcceeccCCce----eeeeehhhhhhhcC
Confidence 11 1123343333333211110 27799999999 99999999988654
No 203
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=96.85 E-value=0.0033 Score=58.74 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=95.3
Q ss_pred hhCCCCccccccCCCceeEECCCCCHH-HHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcCCCCCccchhh
Q 024256 39 RMFRPSLSTIIPEKSKVVTISPTDTVL-MATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEK 114 (270)
Q Consensus 39 ~~~~~~v~~im~~~~~~~~v~~~~tv~-~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~ 114 (270)
.+....++++|+|..+++.++.+..+. +......+++++++||.+ ...+.|.+....+ ++..........++..
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~ 277 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSE 277 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchh
Confidence 344667999999988999999999998 555566689999999998 2334444444443 5554433445678899
Q ss_pred ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256 115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167 (270)
Q Consensus 115 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 167 (270)
.+......+++++++.+.++.|++.+.+.+.|.+ ...-+|+++..|+ ....
T Consensus 278 ~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 278 SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred hhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence 9988999999999999999999988766666655 6678999999998 6544
No 204
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.0011 Score=62.00 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=50.8
Q ss_pred ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-----CcEEEEEeHHHHHHHH
Q 024256 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD-----GDVVDVVDVIHITHAA 166 (270)
Q Consensus 109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----g~~~Givt~~dll~~~ 166 (270)
...++++|.+++++++.-+.+..+.+.++..+.+..||+|+. +++.|+|-++.++..+
T Consensus 581 ~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL 643 (762)
T KOG0474|consen 581 NLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL 643 (762)
T ss_pred hhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999953 4789999888877654
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.96 E-value=0.049 Score=49.37 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=45.3
Q ss_pred cEEEEEeCCEEEEEeeHHHHHH--------HHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEe
Q 024256 77 SSAVVTVENKPRGILTSKDILM--------RVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD 148 (270)
Q Consensus 77 ~~i~Vv~~~~~~Givt~~dl~~--------~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd 148 (270)
+.+.++++|+++..-+..+++. .+........-.++.++|.+.......+-+ .+++. ++...+.|+|
T Consensus 233 DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~ 307 (382)
T TIGR03415 233 NRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTID 307 (382)
T ss_pred CEEEEEECCEEEEecCHHHHhhCcchHHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhhh---cccceeEeec
Confidence 4566666778777767776641 111111112234678899544333343333 44444 6788999998
Q ss_pred CCCcEEEEEeHHHHHH
Q 024256 149 RDGDVVDVVDVIHITH 164 (270)
Q Consensus 149 ~~g~~~Givt~~dll~ 164 (270)
. |+++..+...
T Consensus 308 ~-----~~~~~~~~~~ 318 (382)
T TIGR03415 308 K-----QVRRRDAKLP 318 (382)
T ss_pred c-----ceecccchHh
Confidence 5 8888766544
No 206
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.074 Score=50.09 Aligned_cols=49 Identities=24% Similarity=0.208 Sum_probs=39.5
Q ss_pred CeeecCC-CCHHHHHHHhHhCCCCEEEEEeC--CCcEEEEEeHHHHHHHHHH
Q 024256 120 PECATID-TPIVDALHIMHDGKFLHLPVVDR--DGDVVDVVDVIHITHAAVA 168 (270)
Q Consensus 120 ~~~v~~~-~~l~~a~~~~~~~~~~~lpVvd~--~g~~~Givt~~dll~~~~~ 168 (270)
...++.+ +++++...+|.+..++..||+-+ ..+++|++.++|+...+..
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ 609 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILN 609 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhh
Confidence 4556655 89999999999999988888742 4689999999999987543
No 207
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.90 E-value=0.23 Score=47.99 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=50.0
Q ss_pred CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHH
Q 024256 41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVI 101 (270)
Q Consensus 41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~ 101 (270)
+...|+++|. +++..+..+.|..|..+.+.......+|+++ +..++|.|.++.+. .++
T Consensus 586 h~v~VE~iMV--~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~-~ll 646 (931)
T KOG0476|consen 586 HTVKVEHIMV--TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLT-ALL 646 (931)
T ss_pred eEEEeeeecc--ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHH-HHH
Confidence 4457899999 8999999999999999998877799999998 35689999999987 444
No 208
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.47 E-value=0.061 Score=37.74 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=28.6
Q ss_pred eeEEeecCCCCeeEeecC-CCChHHHHHhhhhh
Q 024256 236 FAFKVQDNKGLMHRFTCG-MLPFPNFIEVTNYE 267 (270)
Q Consensus 236 ~~~~VvD~~g~l~~~~vG-ivs~~Dil~~i~~~ 267 (270)
|.||..+.+|++|||+++ --++.++.++|...
T Consensus 1 f~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~R 33 (86)
T cd06409 1 FAFKFKDPKGRVHRFRLRPSESLEELRTLISQR 33 (86)
T ss_pred CcEEeeCCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 358999999999999999 99999999998764
No 209
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.38 E-value=0.053 Score=45.96 Aligned_cols=97 Identities=19% Similarity=0.172 Sum_probs=66.6
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCC----CCChhHHHHHHHHh-------hCCCCccccccCCC--ceeEECCCCCHHHH
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTS----ISGPNTFIETLRER-------MFRPSLSTIIPEKS--KVVTISPTDTVLMA 67 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~-------~~~~~v~~im~~~~--~~~~v~~~~tv~~a 67 (270)
|+.|...++.+++..+|-..+++.. ..+.+++.+.+... +...++.+.|.+.. +--.+....+-.++
T Consensus 196 idEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (309)
T COG1125 196 IDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDA 275 (309)
T ss_pred HHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHH
Confidence 5677778888888888877777642 34456777776421 12335666666311 11223444555678
Q ss_pred HHHHHHCCCcEEEEEe-CCEEEEEeeHHHHH
Q 024256 68 TKKMLELRLSSAVVTV-ENKPRGILTSKDIL 97 (270)
Q Consensus 68 ~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~ 97 (270)
+..+...+.+.+||+| +|+++|.+|..+++
T Consensus 276 ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~ 306 (309)
T COG1125 276 LSDFLARGRSVLPVVDEDGRPLGTVTRADLL 306 (309)
T ss_pred HHHHHhcCCceeEEECCCCcEeeEEEHHHHh
Confidence 8888888999999999 99999999999986
No 210
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=89.18 E-value=0.59 Score=45.26 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=55.5
Q ss_pred ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC--cEEEEEeHHHHHHHHHHHhCCCC
Q 024256 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG--DVVDVVDVIHITHAAVATVGNTA 174 (270)
Q Consensus 109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g--~~~Givt~~dll~~~~~~~~~~~ 174 (270)
...+.++|.+++.++..++|..|.-+.+.....+.+|+||..+ -++|.|.++.|...+-..++.++
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~~ 654 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPEP 654 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCccH
Confidence 3578999999999999999999999888887789999998543 58999999999988766665433
No 211
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=84.60 E-value=0.3 Score=39.04 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=27.4
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHH
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETL 36 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 36 (270)
|+.+++.+|+++++++| |+|++|.|-++++-
T Consensus 55 MDtVtea~mAi~ma~~G-----GIGVih~nm~~~e~ 85 (170)
T COG0516 55 MDTVTEARMAIAMARDG-----GIGVMHGNMLAEES 85 (170)
T ss_pred HHHHHHHHHhHHHHHcC-----CeEEEeccccHhhC
Confidence 78999999999999999 99999999776433
No 212
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=80.39 E-value=15 Score=32.58 Aligned_cols=35 Identities=9% Similarity=-0.040 Sum_probs=28.1
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM 40 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 40 (270)
|+++.+.+|+.+++..| +.+.+|.+--+++..++.
T Consensus 53 Mdtv~~~~mA~~la~~g-----~~~~iHk~~~~e~~~~~v 87 (343)
T TIGR01305 53 MDTVGTFEMAAALSQHS-----IFTAIHKHYSVDEWKAFA 87 (343)
T ss_pred CCcccCHHHHHHHHHCC-----CeEEEeeCCCHHHHHHHH
Confidence 89999999999999999 999999864444444433
No 213
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=73.30 E-value=2.1 Score=38.26 Aligned_cols=29 Identities=38% Similarity=0.392 Sum_probs=25.4
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHH
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIE 34 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 34 (270)
|+++++.+|++++++.| |++++|.+..++
T Consensus 45 MDtVte~~mAiama~~G-----glgvih~~~~~e 73 (352)
T PF00478_consen 45 MDTVTESEMAIAMARLG-----GLGVIHRNMSIE 73 (352)
T ss_dssp STTTSSHHHHHHHHHTT-----SEEEEESSSCHH
T ss_pred ccccchHHHHHHHHHhc-----CCceecCCCCHH
Confidence 89999999999999999 999999874433
No 214
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=71.48 E-value=17 Score=35.31 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc-CCCC----Cc-----cchhhcc-CCCCeeecCCCCHHHH
Q 024256 65 LMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPA----DS-----TLVEKVM-TPNPECATIDTPIVDA 132 (270)
Q Consensus 65 ~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~-~~~~----~~-----~~v~~im-~~~~~~v~~~~~l~~a 132 (270)
.+..+.+...+ ..+++.| +|.++.+....+++ +.... +... .. .-++-.+ ...++.|.......+.
T Consensus 62 ~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~-~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~ 139 (638)
T PRK11388 62 EDAWEYMADRE-CALLILDETGCILSRNGDPQTL-QQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQA 139 (638)
T ss_pred HHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHH-HHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHh
Confidence 34444444444 6778888 99999999888876 33322 2211 11 1122222 3366667766655554
Q ss_pred HHHhHhCCCCEEEEEeCCCcEEEEEe
Q 024256 133 LHIMHDGKFLHLPVVDRDGDVVDVVD 158 (270)
Q Consensus 133 ~~~~~~~~~~~lpVvd~~g~~~Givt 158 (270)
+. .......||.|.+|+++|+|+
T Consensus 140 ~~---~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 140 LH---NWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred cc---CceEEeeEEEcCCCCEEEEEE
Confidence 43 345677899999999999996
No 215
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=62.25 E-value=48 Score=23.99 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCC---HHHHHHHh
Q 024256 61 TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP---IVDALHIM 136 (270)
Q Consensus 61 ~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~---l~~a~~~~ 136 (270)
..++.+|++..++.+.--+..+. +... .-+.+.+..+ .+..+.+.+....+.+..+.+ ..+....+
T Consensus 3 ~gs~~~a~~~Ak~~~K~llv~~~~~~c~----~c~~~~~~vl------~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~ 72 (114)
T cd02958 3 QGSFEDAKQEAKSEKKWLLVYLQSEDEF----DSQVLNRDLW------SNESVKEFIRENFIFWQCDIDSSEGQRFLQSY 72 (114)
T ss_pred cCCHHHHHHHHHhhCceEEEEEecCCcc----hHHHHHHHHc------CCHHHHHHHHhCEEEEEecCCCccHHHHHHHh
Confidence 45788999988876543333333 3321 1122211111 134677777766666665543 33334444
Q ss_pred HhCCCCEEEEEeC-CCcE----EEEEeHHHHHHH
Q 024256 137 HDGKFLHLPVVDR-DGDV----VDVVDVIHITHA 165 (270)
Q Consensus 137 ~~~~~~~lpVvd~-~g~~----~Givt~~dll~~ 165 (270)
...+.+.+.++|. +|++ .|.++..+++..
T Consensus 73 ~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~ 106 (114)
T cd02958 73 KVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQ 106 (114)
T ss_pred CccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHH
Confidence 4556777788887 6765 477888888875
No 216
>smart00594 UAS UAS domain.
Probab=57.51 E-value=38 Score=25.05 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhH--
Q 024256 61 TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMH-- 137 (270)
Q Consensus 61 ~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~-- 137 (270)
..|..+|++...+.+-..+..+. +... .-..+. +-+ ..+..+.+++...++....+.+-.+..+++.
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~----~c~~~~-r~v-----l~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~ 82 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSP----DSQVFN-RDV-----LCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFY 82 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCc----hHHHHH-HHH-----ccCHHHHHHHHcCEEEEEecCCChhHHHHHHhc
Confidence 55889999998876655555555 3221 212222 111 1235678888777766555544444444444
Q ss_pred -hCCCCEEEEEeCCC---------cEEEEEeHHHHHH
Q 024256 138 -DGKFLHLPVVDRDG---------DVVDVVDVIHITH 164 (270)
Q Consensus 138 -~~~~~~lpVvd~~g---------~~~Givt~~dll~ 164 (270)
-.+.+.+.+++.++ ++-|.++..+++.
T Consensus 83 ~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~ 119 (122)
T smart00594 83 KLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMT 119 (122)
T ss_pred CcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHH
Confidence 44567788888665 3445566666664
No 217
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=51.60 E-value=8.7 Score=26.24 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 238 FKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 238 ~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
++|+|++|.. +|+++.++.++.-..
T Consensus 15 VrlI~~~g~~----lGv~~~~eAl~~A~~ 39 (76)
T PF05198_consen 15 VRLIDEDGEQ----LGVMSLREALRLAKE 39 (76)
T ss_dssp EEEE-TTS-E----EEEEEHHHHHHHHHH
T ss_pred EEEECCCCcE----eceEEHHHHHHHHHH
Confidence 6699999999 999999999876543
No 218
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=49.73 E-value=41 Score=22.91 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=19.5
Q ss_pred CCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 141 FLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 141 ~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
...+-|+|++|+.+|+++..+-++.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 4678889999999999999998875
No 219
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=46.95 E-value=21 Score=26.12 Aligned_cols=74 Identities=23% Similarity=0.143 Sum_probs=33.7
Q ss_pred HHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC
Q 024256 72 LELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 150 (270)
Q Consensus 72 ~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~ 150 (270)
...+.+.+.|.| +|..+. ..+- ..+ +.......+...+.-..++-....+... .-.-..||.|.+
T Consensus 35 ~~~~~~~i~v~D~~g~~l~---~s~~--~~i--G~~~~~~~~~~aL~G~~~~~~~~~~~~~-------~~~~~~PV~d~~ 100 (116)
T PF14827_consen 35 KESDIDYIVVTDRDGIVLA---HSDP--ERI--GDRYSDEDVRKALQGKSYTSVSQGTGGP-------SLRAFAPVYDSD 100 (116)
T ss_dssp HHCT-SEEEEECTTSBECE----SSC--CCT--TSB-SSCCHCHHCCT--EEEEEECTTCE-------EEEEEEEEE-TT
T ss_pred hhcCCeEEEEEcCCCCEEE---cCCh--HHc--CCcccCCChhhhhcCCceEEeeecCCce-------EEEEEEeeECCC
Confidence 357899999999 776432 2221 111 1111112344444333322222212111 112357999889
Q ss_pred CcEEEEEeH
Q 024256 151 GDVVDVVDV 159 (270)
Q Consensus 151 g~~~Givt~ 159 (270)
|+++|+|..
T Consensus 101 g~viG~V~V 109 (116)
T PF14827_consen 101 GKVIGVVSV 109 (116)
T ss_dssp S-EEEEEEE
T ss_pred CcEEEEEEE
Confidence 999999864
No 220
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=44.48 E-value=26 Score=31.01 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=40.2
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEE
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAV 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~ 80 (270)
|+.+++.+++.++++.| |++.++.+...+...+...+.+ ..+.. ...+..+....+.++.+.+.+.+.+.
T Consensus 42 M~~vt~~~ma~ava~~G-----glGvi~~~~~~~~~~~~i~~vk-~~l~v----~~~~~~~~~~~~~~~~l~eagv~~I~ 111 (325)
T cd00381 42 MDTVTESEMAIAMARLG-----GIGVIHRNMSIEEQAEEVRKVK-GRLLV----GAAVGTREDDKERAEALVEAGVDVIV 111 (325)
T ss_pred CCcCCcHHHHHHHHHCC-----CEEEEeCCCCHHHHHHHHHHhc-cCceE----EEecCCChhHHHHHHHHHhcCCCEEE
Confidence 78889999999999999 9888886633344433321111 00110 11122222334556666667776544
Q ss_pred E
Q 024256 81 V 81 (270)
Q Consensus 81 V 81 (270)
|
T Consensus 112 v 112 (325)
T cd00381 112 I 112 (325)
T ss_pred E
Confidence 3
No 221
>PF14044 NETI: NETI protein
Probab=41.07 E-value=42 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=20.2
Q ss_pred EECCCCCHHHHHHHHHHCCCcEEEEEe
Q 024256 57 TISPTDTVLMATKKMLELRLSSAVVTV 83 (270)
Q Consensus 57 ~v~~~~tv~~a~~~m~~~~~~~i~Vv~ 83 (270)
.+.++.||.++++.|.+.|+ .||-.
T Consensus 3 eV~enETI~~CL~RM~~eGY--~PvrR 27 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVRR 27 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Cceee
Confidence 56789999999999999876 45543
No 222
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=36.54 E-value=53 Score=29.32 Aligned_cols=35 Identities=14% Similarity=-0.064 Sum_probs=28.6
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM 40 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 40 (270)
|+++.+.+|+.+++..| +.+.+|..--+++..++.
T Consensus 54 MdTV~~~~mA~~la~~g-----~~~~iHk~~~~e~~~~fv 88 (346)
T PRK05096 54 MDTVGTFEMAKALASFD-----ILTAVHKHYSVEEWAAFV 88 (346)
T ss_pred CCccccHHHHHHHHHCC-----CeEEEecCCCHHHHHHHH
Confidence 89999999999999999 999999975555544443
No 223
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=36.18 E-value=1.6e+02 Score=28.02 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHH-CCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhC
Q 024256 62 DTVLMATKKMLE-LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 139 (270)
Q Consensus 62 ~tv~~a~~~m~~-~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~ 139 (270)
..+....+.+.. ++...+.|.| +| +-+-++..= +. +.......-..++.-..+.....-++..+++
T Consensus 73 ~~iq~~~~~i~~~t~a~fIVV~d~~g--IR~~HP~pe--rI---Gkp~~ggde~a~~~G~~yvS~~kGslg~s~R----- 140 (537)
T COG3290 73 ARIQAIAEAIRSITDADFIVVGDMKG--IRLTHPNPE--RI---GKPFQGGDEEAALAGESYVSTAKGSLGKSLR----- 140 (537)
T ss_pred hhHHHHHHHHHhhcCceEEEEecCCc--ceecCCChH--Hh---CCCccCCCHHHHhCCceeEEEeeccchhhhe-----
Confidence 666777777765 5777777777 54 333342221 11 1111111233344444444444445666554
Q ss_pred CCCEEEEEeCCCcEEEEEeH
Q 024256 140 KFLHLPVVDRDGDVVDVVDV 159 (270)
Q Consensus 140 ~~~~lpVvd~~g~~~Givt~ 159 (270)
...||.|++|+.+|+|+.
T Consensus 141 --~~~PI~d~~g~~IGvVsV 158 (537)
T COG3290 141 --AKVPIFDEDGKQIGVVSV 158 (537)
T ss_pred --eecceECCCCCEEEEEEE
Confidence 358999999999999965
No 224
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=35.44 E-value=61 Score=30.76 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHH
Q 024256 62 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 97 (270)
Q Consensus 62 ~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~ 97 (270)
..+..+.+...+.|-.-++|++++++.|+|..+|++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDiv 448 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIV 448 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhc
Confidence 345677777777788889999999999999999998
No 225
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=32.24 E-value=36 Score=24.28 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=15.7
Q ss_pred CCCCEEEEEeCCCcEEEE
Q 024256 139 GKFLHLPVVDRDGDVVDV 156 (270)
Q Consensus 139 ~~~~~lpVvd~~g~~~Gi 156 (270)
.+.+.-||+|.+|+++|+
T Consensus 103 ~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 103 PGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp TTTTTSEEEETTSEEEEE
T ss_pred CCcEeHhEECCCCEEEeC
Confidence 467788999999999997
No 226
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.65 E-value=24 Score=32.31 Aligned_cols=31 Identities=42% Similarity=0.445 Sum_probs=24.8
Q ss_pred ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHH
Q 024256 1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETL 36 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 36 (270)
|+.+++-++++++++.| |+|++|.+...+++
T Consensus 50 Md~Vt~~~lA~AvA~aG-----GlGvI~~~~~~e~l 80 (404)
T PRK06843 50 MDTVTESQMAIAIAKEG-----GIGIIHKNMSIEAQ 80 (404)
T ss_pred CCCCCCHHHHHHHHHCC-----CEEEecCCCCHHHH
Confidence 78889999999999999 99888865333333
No 227
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=29.60 E-value=76 Score=30.15 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=31.5
Q ss_pred CHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256 128 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165 (270)
Q Consensus 128 ~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~ 165 (270)
.+..+.+...+.+-.-++|+. +|++.|+|..+|+++.
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~ 450 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcch
Confidence 467777888888878888887 8999999999999886
No 228
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=27.65 E-value=76 Score=21.17 Aligned_cols=17 Identities=35% Similarity=0.857 Sum_probs=13.6
Q ss_pred EEEEEeCCCcEEEEEeH
Q 024256 143 HLPVVDRDGDVVDVVDV 159 (270)
Q Consensus 143 ~lpVvd~~g~~~Givt~ 159 (270)
..||.+++|+++|++..
T Consensus 18 s~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
Confidence 35899988999999743
No 229
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.41 E-value=1.2e+02 Score=19.45 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=31.4
Q ss_pred ECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHH
Q 024256 58 ISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 96 (270)
Q Consensus 58 v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl 96 (270)
.....++.+.++...+.|++.+.+.|.+.+.|.....+.
T Consensus 11 ~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~ 49 (67)
T smart00481 11 LDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKA 49 (67)
T ss_pred ccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHH
Confidence 366788999999999999999999997777776554444
No 230
>PRK10026 arsenate reductase; Provisional
Probab=22.84 E-value=3.6e+02 Score=20.74 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=55.8
Q ss_pred eeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC---ee--e-cCCC
Q 024256 55 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP---EC--A-TIDT 127 (270)
Q Consensus 55 ~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~---~~--v-~~~~ 127 (270)
+...+.-.|+..|++++.++++..-.+ + -. -=.|..+|. .++.... ....+++++.- -. . ..+.
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~~~~-d~~~---~ppt~~eL~-~~l~~~g----~~~~~lint~~~~yr~L~~~~~~l 76 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEPTII-HYLE---TPPTRDELV-KLIADMG----ISVRALLRKNVEPYEELGLAEDKF 76 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcEEE-eeeC---CCcCHHHHH-HHHHhCC----CCHHHHHHcCCchHHHcCCCccCC
Confidence 566677788999999999998765333 3 11 124778885 6665321 22344443311 00 1 1357
Q ss_pred CHHHHHHHhHhCCCCEE--EEE-eCCCcEEEE
Q 024256 128 PIVDALHIMHDGKFLHL--PVV-DRDGDVVDV 156 (270)
Q Consensus 128 ~l~~a~~~~~~~~~~~l--pVv-d~~g~~~Gi 156 (270)
+..+++++|.++.. -+ ||+ +++|.++|-
T Consensus 77 s~~e~l~ll~~~P~-LIKRPIi~~~~~a~i~R 107 (141)
T PRK10026 77 TDDQLIDFMLQHPI-LINRPIVVTPLGTRLCR 107 (141)
T ss_pred CHHHHHHHHHhCcc-ceeCcEEEcCCCeEEEC
Confidence 88999999998762 22 554 456777776
No 231
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=22.80 E-value=1.4e+02 Score=20.85 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=24.0
Q ss_pred CceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256 234 SAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY 266 (270)
Q Consensus 234 ~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~ 266 (270)
..+..+..|+ |.. +-|.|+.||=.++..
T Consensus 39 ~~~~iKykDE-GD~----iti~sq~DLd~Ai~~ 66 (86)
T cd06408 39 RRLKIKMKDD-GDM----ITMGDQDDLDMAIDT 66 (86)
T ss_pred CceEEEEEcC-CCC----ccccCHHHHHHHHHH
Confidence 3456889999 999 999999999988864
No 232
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=22.77 E-value=3.1e+02 Score=20.06 Aligned_cols=96 Identities=6% Similarity=0.019 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH---HHHHhH
Q 024256 62 DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD---ALHIMH 137 (270)
Q Consensus 62 ~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~---a~~~~~ 137 (270)
-|..+|++..++.+.--+..+. ++.. ......+..+ .+..+.+++..+++...-|..-.+ +...+.
T Consensus 4 gs~~eAl~~ak~e~K~llVylhs~~~~----~~~~fc~~~l------~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~ 73 (116)
T cd02991 4 GTYSQALNDAKQELRFLLVYLHGDDHQ----DTDEFCRNTL------CAPEVIEYINTRMLFWACSVAKPEGYRVSQALR 73 (116)
T ss_pred CcHHHHHHHHHhhCCEEEEEEeCCCCc----cHHHHHHHHc------CCHHHHHHHHcCEEEEEEecCChHHHHHHHHhC
Confidence 3788999988765543333333 3221 1111111111 134677777776666655554344 445566
Q ss_pred hCCCCEEEEE---eCCC----cEEEEEeHHHHHHHHH
Q 024256 138 DGKFLHLPVV---DRDG----DVVDVVDVIHITHAAV 167 (270)
Q Consensus 138 ~~~~~~lpVv---d~~g----~~~Givt~~dll~~~~ 167 (270)
-..++.+.++ +++. ++.|.++..+++..+.
T Consensus 74 ~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 74 ERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred CCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHH
Confidence 6677888788 4332 4678889999988643
No 233
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=22.23 E-value=81 Score=24.17 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=14.9
Q ss_pred CCCEEEEEeCCCcEEEEE
Q 024256 140 KFLHLPVVDRDGDVVDVV 157 (270)
Q Consensus 140 ~~~~lpVvd~~g~~~Giv 157 (270)
+-+.=|+.|+.|+++|||
T Consensus 106 GDSGRpi~DNsGrVVaIV 123 (158)
T PF00944_consen 106 GDSGRPIFDNSGRVVAIV 123 (158)
T ss_dssp TSTTEEEESTTSBEEEEE
T ss_pred CCCCCccCcCCCCEEEEE
Confidence 345569999999999998
No 234
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=20.52 E-value=78 Score=22.05 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=19.4
Q ss_pred cCCCCeeEeecCCCChHHHHHhhhhh
Q 024256 242 DNKGLMHRFTCGMLPFPNFIEVTNYE 267 (270)
Q Consensus 242 D~~g~l~~~~vGivs~~Dil~~i~~~ 267 (270)
.++|++ -|-||-.||.+++...
T Consensus 23 g~~gkl----fGSVt~~dIa~~l~~~ 44 (87)
T PF03948_consen 23 GENGKL----FGSVTSKDIAKALKEQ 44 (87)
T ss_dssp SSCSSB----SSEBSHHHHHHHHHHC
T ss_pred cCCcce----ecCcCHHHHHHHHHHh
Confidence 468999 9999999999999765
Done!