BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024258
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 73/103 (70%), Gaps = 3/103 (2%)
Query: 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVR 63
+GR PPD+ SL V N+T+RT+ D L +F+KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61
Query: 64 YKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIKEG 104
+ +A+ A+D +DG V+DGRE+ VQ A+YG P++ + G
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes
GN=SRSF2 PE=2 SV=3
Length = 221
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVR 63
+GR PPD+ SL V N+T+RT+ D L +F+KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61
Query: 64 YKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95
+ +A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2
PE=2 SV=1
Length = 221
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVR 63
+GR PPD+ SL V N+T+RT+ D L +F+KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61
Query: 64 YKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95
+ +A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVR 63
+GR PPD+ SL V N+T+RT+ D L +F+KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61
Query: 64 YKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95
+ +A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVR 63
+GR PPD+ SL V N+T+RT+ D L +F+KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61
Query: 64 YKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95
+ +A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVR 63
+GR PPD+ SL V N+T+RT+ D L +F+KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61
Query: 64 YKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95
+ +A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2
PE=2 SV=3
Length = 221
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVR 63
+GR PPD+ SL V N+T+RT+ D L +F+KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61
Query: 64 YKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95
+ +A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4
OS=Caenorhabditis elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 6 RSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYK 65
R PDI SL + N++++TT +DL F++YG + D+ IPRD+ + S+GF FVR+
Sbjct: 9 RRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFY 68
Query: 66 YADEAQKAVDRLDGRVVDGREITVQFAKY 94
+A+ A+DR DG++VDGRE+ V AKY
Sbjct: 69 ERRDAEHALDRTDGKLVDGRELRVTLAKY 97
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 59/87 (67%)
Query: 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ +L V N+T+RT+ D L +F+KYG+V D++IPR+ T RGFAFVR+
Sbjct: 7 PPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+AQ A +DG +DGRE+ VQ A+YG
Sbjct: 67 DAQDAEAAMDGAELDGRELRVQVARYG 93
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
SLLV N+ +DL F+++G V DI++PRD TGD RGF FV++ +A A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 77 LDGRVVDGREITVQFAK 93
+DG ++ GRE+TV FA+
Sbjct: 97 MDGYLLLGRELTVVFAE 113
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 63.2 bits (152), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEA 70
D+ ++ + V N+++ T +DL +F K+GK+ +I IP D + S+G AF+ Y + A
Sbjct: 356 DVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENA 415
Query: 71 QKAVDRLDGRVVDGREITVQFAKYGPNAERIKEGLLNHSRDRSTG 115
+A++ +DG+V GR I V K P A++ E N++ G
Sbjct: 416 VQALNDMDGKVFQGRLIHVLPGKAAP-AKQFSENKDNNNNGAEGG 459
Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+++ N+ F +T ++ LF YG++ + IP+ + G RGF FV + +EA+ A++ L
Sbjct: 797 IIIKNLPFESTIKEIRKLFTAYGEIQSVRIPK-KPNGGHRGFGFVEFLTEEEAKNAMEAL 855
Query: 78 DGRVVDGREITVQFAKYGPNAERIKE 103
GR + +Q+A+ N + ++E
Sbjct: 856 GNSHFYGRHLVLQYAEQDKNIDELRE 881
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFI-----PRDRRTGDSRGFAFVRYKYAD 68
+T + + N+ ++TT + L F V++ I P++ GF F+ +
Sbjct: 676 NTQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQ 735
Query: 69 EAQKAVDRLDGRVVDGREITVQFA 92
A + + +L+G +DG EI+++ +
Sbjct: 736 GAYECIKKLNGSSIDGYEISLKLS 759
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 1 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFA 60
MS + R PP+ SL V N+ T ++DL F +YG +VD+++P D T RGFA
Sbjct: 1 MSRYLR--PPNT----SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFA 54
Query: 61 FVRYKYADEAQKAVDRLDGRVVDGREITVQFA---KYGPNAERIKEG 104
+V+++ +A+ A+ LD + + GR+I +QFA + PN + KEG
Sbjct: 55 YVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 1 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFA 60
MS + R PP+ SL V N+ T ++DL F +YG +VD+++P D T RGFA
Sbjct: 1 MSRYLR--PPNT----SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFA 54
Query: 61 FVRYKYADEAQKAVDRLDGRVVDGREITVQFA---KYGPNAERIKEG 104
+V+++ +A+ A+ LD + + GR+I +QFA + PN + KEG
Sbjct: 55 YVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
>sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3 subunit G
OS=Dictyostelium discoideum GN=eif3G PE=3 SV=1
Length = 233
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADE 69
P +D S++V N++ T DL+ LF ++G V + IP+ G S+GFA+V Y + D
Sbjct: 146 PSGSDVPSIMVSNLSQNATEKDLYELFGQFGPVSRVSIPKSME-GSSKGFAYVTYNHLDS 204
Query: 70 AQKAVDRLDGRVVDGREITVQFAK 93
A+KA+ +L+G D ++++FAK
Sbjct: 205 AEKALKQLNGHRYDYLVLSLEFAK 228
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%)
Query: 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEA 70
D D +L V N++ T DDL +F KYG + +++ +DR TG RGFAFV Y A
Sbjct: 209 DDDDELTLRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHA 268
Query: 71 QKAVDRLDGRVVDGREITVQFAK 93
Q A++ +DG D + V ++K
Sbjct: 269 QAALEAMDGHGFDNLIMKVDYSK 291
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 61.2 bits (147), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQ 71
I +T L + NI + T DD LF YG++ ++ I D RTG S+GFA+V +K AD A
Sbjct: 326 IRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAA 385
Query: 72 KAVDRLDGRVVDGR 85
A LD ++ GR
Sbjct: 386 TAFVELDKQIFQGR 399
Score = 55.1 bits (131), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
++V N+ F T D+F LF +G++ + +P+ + +RGFAFV + EA+ A+D+L
Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPK-KFDKSARGFAFVEFLLPKEAENAMDQL 812
Query: 78 DGRVVDGREITVQFAKYGP 96
G + GR + ++F + P
Sbjct: 813 QGVHLLGRRLVMEFVEQDP 831
Score = 37.0 bits (84), Expect = 0.17, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 6 RSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFI---PRDRRTGD--SRGFA 60
++GP T S+ + N+ F TT+ L F + V + P ++ G S GF
Sbjct: 646 QAGP-----TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFG 700
Query: 61 FVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92
F +K ++A + ++G ++DG ++ ++ +
Sbjct: 701 FAEFKTKEQANAVISAMEGTILDGHKLQLKLS 732
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 52 RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93
R G+SR FAF+ ++ ++A V+ +G VD +I V AK
Sbjct: 48 RDGESRRFAFIGFRDEEDAFDCVNYFNGTFVDTSKIEVSMAK 89
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYAD 68
P + +DT L + N++F D +F LF K+G+VV + IP T +GF +V++ +
Sbjct: 262 PSEPSDT--LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 319
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYGPN 97
+A+KA+D L G +D R + + F+ PN
Sbjct: 320 DAKKALDALQGEYIDNRPVRLDFSSPRPN 348
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
++ V +++ + L F+ G V+ + +R T SRG+ +V ++ A+KA+
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228
Query: 77 LDGRVVDGREITVQFAKYGP--NAERIKE 103
+ G+ +DGR I + P N +R K+
Sbjct: 229 MQGKEIDGRPINCDMSTSKPAGNNDRAKK 257
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEA 70
D+ ++ L V N+ + +T +DL LF KYG + ++ P D T +GFAF+ + + + A
Sbjct: 397 DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 456
Query: 71 QKAVDRLDGRVVDGREITV 89
KA +DG+V GR + V
Sbjct: 457 VKAYSEVDGQVFQGRMLHV 475
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGD---SRGFAFVRYKYADEAQKA 73
+L + N+ F TT + L +F K G V I + + S GF FV Y+ ++AQKA
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 74 VDRLDGRVVDGREITVQFAK 93
+ +L G VVDG ++ V+ ++
Sbjct: 791 LKQLQGHVVDGHKLEVRISE 810
Score = 38.9 bits (89), Expect = 0.039, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L+V N+ + LF +G + D + + + G R F F+ +K +EAQKA
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSL-KFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 78 DGRVVDGREITVQFAK 93
+ +D ITV+F K
Sbjct: 63 NKSFIDTSRITVEFCK 78
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 59.3 bits (142), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEA 70
D+ D+ L V N+++ ++ +DL LF YG + ++ P D T +GFAFV + + + A
Sbjct: 395 DLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 454
Query: 71 QKAVDRLDGRVVDGREITV 89
KA +DG+V GR + V
Sbjct: 455 VKAYAEVDGQVFQGRMLHV 473
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGD---SRGFAFVRYKYADEAQKA 73
+L + N+ F TT + L +F K G + I + + S GF FV YK ++AQKA
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782
Query: 74 VDRLDGRVVDGREITVQFAKYGPNAERIKEGLLNHSRDR 112
+ +L G VDG ++ V+ +ER + L +R +
Sbjct: 783 LKQLQGHTVDGHKLEVRI------SERATKPALTSTRKK 815
Score = 37.4 bits (85), Expect = 0.12, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L+V N+ + LF +G + D + + + G R F F+ +K +EAQ A++
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSL-KFTKDGKFRKFGFIGFKSEEEAQAALNHF 62
Query: 78 DGRVVDGREITVQFAK 93
+D ITV+F K
Sbjct: 63 HRSFIDTTRITVEFCK 78
>sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3 subunit G OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=TIF35 PE=3 SV=1
Length = 308
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ DDL LF ++G+VV +++ RDR TG +G+AFV ++ ++A +A
Sbjct: 223 DLPTLRVTNLSEDADDDDLRELFMRFGRVVRVYVGRDRETGICKGYAFVSFENREDADRA 282
Query: 74 VDRLDGRVVDGREITVQFA 92
++DGR D ++ Q++
Sbjct: 283 RQKVDGRGYDNLILSCQWS 301
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V + F TT + L +F KYG+V ++ + +DR + SRGF FV ++ ++A+ A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 78 DGRVVDGREITVQFAKYGPN 97
+G+ VDGR+I V A N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSN 87
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L + + + D L F KYG+VVD + DR TG SRGF FV + ++ A A+ L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 78 DGRVVDGREITVQFAK 93
DGR + GR + V +A
Sbjct: 102 DGRDLHGRVVKVNYAN 117
>sp|Q0U6E7|EIF3G_PHANO Eukaryotic translation initiation factor 3 subunit G
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=TIF35 PE=3 SV=2
Length = 281
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYA 67
G D D+ +L V N++ DL +F +YG V +F+ +DR TG ++GFAFV Y
Sbjct: 194 GKFDRDDSATLRVTNVSEFAEEQDLRDMFSRYGHVTRVFLAKDRETGRAKGFAFVSYADR 253
Query: 68 DEAQKAVDRLDGRVVDGREITVQFAK 93
+A KA +++DG + V+FAK
Sbjct: 254 TDAAKACEKMDGFGFGHLILRVEFAK 279
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQ 71
++D L + + F T D L F KYG++ ++ + +DR T SRGF FV ++ D+A+
Sbjct: 1 MSDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
Query: 72 KAVDRLDGRVVDGREITVQFA 92
A+ ++G+ VDGR+I V A
Sbjct: 61 DAMMAMNGKSVDGRQIRVDQA 81
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQK 72
+D L V ++F T L +F KYG++ ++ + +DR T SRGF FV ++ D+A+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 73 AVDRLDGRVVDGREITV-QFAKYGPNAERIKEG 104
A+ ++G+ VDGR+I V Q K N R G
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQK 72
+D L V ++F T L +F KYG++ ++ + +DR T SRGF FV ++ D+A+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 73 AVDRLDGRVVDGREITV-QFAKYGPNAERIKEG 104
A+ ++G+ VDGR+I V Q K N R G
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75
Y V + + T +L F ++G+V+D I DR TG SRGF FV +K + A+D
Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65
Query: 76 RLDGRVVDGREITVQFAK 93
++G+ +DGR ITV A+
Sbjct: 66 EMNGKELDGRTITVNEAQ 83
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQ 71
++D L + + F T + L +F KYG++ ++ + +DR T SRGF FV ++ D+A+
Sbjct: 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query: 72 KAVDRLDGRVVDGREITV 89
A+ ++G+ VDGR+I V
Sbjct: 61 DAMMAMNGKAVDGRQIRV 78
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + D+ I D+++ SRGFAFV
Sbjct: 107 HVGNRANPDPNCC--LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + D+ I D+++ SRGFAFV
Sbjct: 107 HVGNRANPDPNCC--LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + D+ I D+++ SRGFAFV
Sbjct: 107 HVGNRANPDPNCC--LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + D+ I D+++ SRGFAFV
Sbjct: 107 HVGNRANPDPNCC--LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 58.2 bits (139), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQ 71
I++T L + N+T+ DDL LF +G++ + +P D++T + +GFA++ + AD+A
Sbjct: 319 ISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAV 378
Query: 72 KAVDRLDGRVVDGREITVQFAK 93
+A LD + GR + V AK
Sbjct: 379 RAYLELDAKPFQGRLLHVLPAK 400
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPR--DRRTGDSRGFAFVRYKYADEAQKAVD 75
+L+ N+ F T D+ L YG++ + +P+ DR +RGFAF + A EA A+
Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDR---SARGFAFAEFVTAREAANAMR 779
Query: 76 RLDGRVVDGREITVQFA 92
L + GR + +Q+A
Sbjct: 780 ALKNTHLLGRHLVLQYA 796
Score = 39.3 bits (90), Expect = 0.034, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 6 RSGPPDIT--DTYSLLVLNITFRTTADD---LFPLFDKYGKVVDIFIPRDRRTGD--SRG 58
+ G DI DT ++ V N+ F T ++ +F + Y V P +R G S G
Sbjct: 607 KVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMG 666
Query: 59 FAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNA 98
F FV +K A A+ ++G V+DG ++ ++ + G +A
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDA 706
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVR 63
+ R G I DT +L V N+ T D+L +F KYG +V I RD+ TG RG AFVR
Sbjct: 177 YARPGGESIKDT-NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVR 235
Query: 64 YKYADEAQKAVDRLDGRVVDG--REITVQFAK 93
+ +EAQ+A+ L+ + +G + +TV+ A+
Sbjct: 236 FNKREEAQEAISALNNVIPEGASQPLTVRLAE 267
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 28 TADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87
T +L+ LF G + I +D +TG S G+AFV + +AQ A+ ++G V + +
Sbjct: 114 TDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRL 173
Query: 88 TVQFAKYGPNAERIKE 103
V +A+ P E IK+
Sbjct: 174 KVSYAR--PGGESIKD 187
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 3 HFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F +YG + + + D+RTG SRGFAFV
Sbjct: 106 HTGSRANPDPNTC--LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 163
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D++++A++R +G +DGR I V ++
Sbjct: 164 YFERIDDSKEAMERANGMELDGRRIRVDYS 193
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 3 HFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F +YG + + + D+RTG SRGFAFV
Sbjct: 108 HTGSRANPDPNTC--LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 165
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D++++A++R +G +DGR I V ++
Sbjct: 166 YFERIDDSKEAMERANGMELDGRRIRVDYS 195
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
++ V NI T D+ LF+KYG V + RD+ TG SRGF FV + ++A KAV
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 77 LDGRVVDGREITV 89
L+ + G+ + V
Sbjct: 303 LNEKEFHGQNLYV 315
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKY 66
S P + SL V + T LF LF + G V I + RD T S G+A+V Y
Sbjct: 52 SAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNT 111
Query: 67 ADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERIKEG 104
+ +KA++ L+ ++ GR + +++ P + +G
Sbjct: 112 TADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG 149
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
++ + N+ L F +G ++ + +D G+S+G+ FV Y+ + A +A+
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKH 208
Query: 77 LDGRVVDGREITV 89
++G +++ +++ V
Sbjct: 209 VNGMLLNEKKVYV 221
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 57.8 bits (138), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQ 71
I T L + NI + +T DD LF YG++ ++ + D RTG+S+GFA+V + +EA
Sbjct: 321 IQKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAV 380
Query: 72 KAVDRLDGRVVDGR 85
+A LD ++ GR
Sbjct: 381 QAYIELDKQIFQGR 394
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
++V N+ F T D+F LF+ +G++ + +P+ + +RGFAFV + EA+ A+D+L
Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPK-KFDKSARGFAFVEFVLPKEAENAMDQL 798
Query: 78 DGRVVDGREITVQ 90
G + GR + +Q
Sbjct: 799 QGVHLLGRRLVMQ 811
Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFI-----PRDRRTGDSRGFAFVRYKYADE 69
T S+ + N+ F+TT+ L F + V + P+ + S GF FV ++ ++
Sbjct: 639 TVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQ 698
Query: 70 AQKAVDRLDGRVVDGREITVQFAKYGPNA 98
A + +DG V+DG +I ++ + NA
Sbjct: 699 ATAVISAMDGTVIDGHKIQLKLSHRQGNA 727
Score = 36.6 bits (83), Expect = 0.20, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 40 GKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93
G + D+ I ++R G SR FAF+ YK +A AV+ DG + +I V AK
Sbjct: 37 GLITDLRILKNRE-GKSRRFAFIGYKNEQDALDAVNYFDGSFIYTSKIEVDMAK 89
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVR 63
+ R G I DT +L V N+ T D+L +F KYG +V I RD+ TG RG AFVR
Sbjct: 160 YARPGGESIKDT-NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVR 218
Query: 64 YKYADEAQKAVDRLDGRVVDG--REITVQFAK 93
+ +EAQ+A+ L+ + +G + +TV+ A+
Sbjct: 219 FNKREEAQEAISALNNVIPEGASQPLTVRLAE 250
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 28 TADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87
T +L+ LF G + I +D +TG S G+AFV + +AQ A+ L+G V + +
Sbjct: 97 TDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRL 156
Query: 88 TVQFAKYGPNAERIKE 103
V +A+ P E IK+
Sbjct: 157 KVSYAR--PGGESIKD 170
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 1 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFA 60
MS + R PP+ SL + N+ T +DL F +YG +VD++IP D T RGFA
Sbjct: 1 MSRYTR--PPNT----SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFA 54
Query: 61 FVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93
+V+++ +A+ A+ L+ + V GR+I +QFA+
Sbjct: 55 YVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQ 87
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVR 63
F R G + DT +L V N++ T + L +F KYG++V I RD+ TG RG AF+R
Sbjct: 153 FARPGGEQLRDT-NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIR 211
Query: 64 YKYADEAQKAVDRLDGRVVDG--REITVQFAK 93
+ +EAQ+A+ L+ + +G + +TV+ A+
Sbjct: 212 FNKREEAQEAISALNNVIPEGGTQPLTVRVAE 243
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 31 DLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90
+L+ LF G + I RD +TG S G+ FV + +A +A++ L+G V + I V
Sbjct: 93 ELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVS 152
Query: 91 FAKYGPNAERIKE 103
FA+ P E++++
Sbjct: 153 FAR--PGGEQLRD 163
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 57.8 bits (138), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V + +T L F KYG ++ +F+ +DR+T SRGFAFV ++ +A+ A +
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 78 DGRVVDGREITV 89
+G+ +DG+ I V
Sbjct: 70 NGKYLDGKAIMV 81
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ V I++ T L F KYG+VVD I DR TG SRGFAFV + +EA A+ +L
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QL 94
Query: 78 DGRVVDGREITVQFA 92
DG+ + GR I V +A
Sbjct: 95 DGQDLHGRRIRVNYA 109
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQK 72
+D L V ++F T L +F KYG++ ++ + +DR T SRGF FV ++ D+A+
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 73 AVDRLDGRVVDGREITV-QFAKYGPNAERIKEG 104
A+ ++G+ VDGR+I V Q K N R G
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQK 72
+D L V ++F T L +F KYG++ ++ + +DR T SRGF FV ++ D+A+
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 73 AVDRLDGRVVDGREITV-QFAKYGPNAERIKEG 104
A+ ++G+ VDGR+I V Q K N R G
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQK 72
+D L V ++F T L +F KYG++ ++ + +DR T SRGF FV ++ D+A+
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 73 AVDRLDGRVVDGREITV-QFAKYGPNAERIKEG 104
A+ ++G+ VDGR+I V Q K N R G
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V +++ T L F +G+V + + DR TG SRGF FV + D A A+ +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 78 DGRVVDGREITVQFAKYGPNAER 100
DG+ ++GR+I V A +A R
Sbjct: 97 DGKELNGRQIRVNLATERSSAPR 119
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
+ Y V + + T + F+++G+V D I DR TG S+GF FV +K D + A
Sbjct: 6 NEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTA 65
Query: 74 VDRLDGRVVDGREITVQ 90
+DR++G+ +DGR IT Q
Sbjct: 66 IDRMNGQELDGRNITAQ 82
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L + + +T L F KYG ++ +F+ +DR+T SRGFAFV ++ +A+ A +
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 78 DGRVVDGREITV 89
+G+ +DG+ I V
Sbjct: 70 NGKYLDGKAIMV 81
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%)
Query: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ V N+ + D L LF + GKVVD + DR +G SRGF FV Y A+E A++ L
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249
Query: 78 DGRVVDGREITVQFAKYGP 96
DG ++GR I V A+ P
Sbjct: 250 DGVDLNGRAIRVSPAEARP 268
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 6 RSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYK 65
R+ PD+ + V N+ F + L LF++ G V + + D+ TG SRGF FV
Sbjct: 81 RNFSPDLK----IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMS 136
Query: 66 YADEAQKAVDRLDGRVVDGREITVQFAKYGPNAER 100
+E + A + +G +DGR + V GP E+
Sbjct: 137 SKEEVEAACQQFNGYELDGRALRV---NSGPPPEK 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.142 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,783,872
Number of Sequences: 539616
Number of extensions: 4464789
Number of successful extensions: 16176
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 306
Number of HSP's that attempted gapping in prelim test: 14765
Number of HSP's gapped (non-prelim): 1581
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)