Query 024258
Match_columns 270
No_of_seqs 262 out of 2048
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0124 Polypyrimidine tract-b 99.9 2.2E-22 4.9E-27 183.4 11.3 189 16-208 114-348 (544)
2 TIGR01645 half-pint poly-U bin 99.8 1E-19 2.2E-24 179.5 18.2 172 13-188 105-320 (612)
3 PLN03134 glycine-rich RNA-bind 99.8 2.3E-18 4.9E-23 142.3 12.7 87 12-98 31-117 (144)
4 TIGR01659 sex-lethal sex-letha 99.8 8.7E-18 1.9E-22 157.1 15.1 87 9-95 101-187 (346)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.4E-17 5.2E-22 153.1 13.7 83 14-96 2-84 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 8.4E-17 1.8E-21 149.5 12.1 85 12-96 266-350 (352)
7 KOG0117 Heterogeneous nuclear 99.7 1.5E-16 3.3E-21 148.5 10.0 158 11-181 79-262 (506)
8 KOG0145 RNA-binding protein EL 99.7 7.5E-16 1.6E-20 135.6 11.7 127 12-138 38-192 (360)
9 TIGR01628 PABP-1234 polyadenyl 99.6 2.4E-15 5.2E-20 148.7 14.2 79 17-95 2-80 (562)
10 PF00076 RRM_1: RNA recognitio 99.6 1.2E-15 2.5E-20 108.7 8.5 70 18-88 1-70 (70)
11 KOG0148 Apoptosis-promoting RN 99.6 1.9E-15 4.1E-20 133.7 11.2 141 9-149 56-239 (321)
12 TIGR01622 SF-CC1 splicing fact 99.6 2.3E-14 5E-19 138.0 15.1 82 12-94 86-167 (457)
13 KOG4207 Predicted splicing fac 99.6 6.5E-15 1.4E-19 125.9 9.0 94 1-96 1-94 (256)
14 KOG0149 Predicted RNA-binding 99.6 4.1E-15 9E-20 129.3 7.6 82 11-93 8-89 (247)
15 TIGR01648 hnRNP-R-Q heterogene 99.6 2.2E-14 4.7E-19 141.5 13.7 135 12-147 55-221 (578)
16 KOG0122 Translation initiation 99.6 1.1E-14 2.4E-19 127.2 9.9 85 11-95 185-269 (270)
17 TIGR01659 sex-lethal sex-letha 99.6 2.2E-14 4.7E-19 134.3 11.7 84 13-96 191-276 (346)
18 KOG0121 Nuclear cap-binding pr 99.6 6.5E-15 1.4E-19 117.4 6.4 82 12-93 33-114 (153)
19 KOG0131 Splicing factor 3b, su 99.5 1.8E-14 3.9E-19 121.0 9.0 83 11-93 5-87 (203)
20 TIGR01645 half-pint poly-U bin 99.5 2E-14 4.4E-19 142.2 10.6 84 13-96 202-285 (612)
21 PF14259 RRM_6: RNA recognitio 99.5 3.5E-14 7.5E-19 102.0 9.0 70 18-88 1-70 (70)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.3E-13 2.8E-18 134.3 15.9 81 13-93 293-373 (509)
23 KOG0130 RNA-binding protein RB 99.5 1.7E-14 3.8E-19 115.9 7.8 93 4-96 61-153 (170)
24 KOG0126 Predicted RNA-binding 99.5 2.9E-15 6.2E-20 125.8 1.7 87 7-93 27-113 (219)
25 KOG0144 RNA-binding protein CU 99.5 8.7E-14 1.9E-18 129.8 10.1 129 10-138 29-188 (510)
26 PLN03120 nucleic acid binding 99.5 1.5E-13 3.3E-18 122.6 10.1 77 14-94 3-79 (260)
27 KOG0125 Ataxin 2-binding prote 99.5 8.9E-14 1.9E-18 125.9 8.7 81 13-95 94-174 (376)
28 TIGR01622 SF-CC1 splicing fact 99.5 4E-13 8.6E-18 129.4 12.7 81 14-94 185-265 (457)
29 KOG0113 U1 small nuclear ribon 99.5 1.5E-13 3.2E-18 123.1 8.7 81 13-93 99-179 (335)
30 smart00362 RRM_2 RNA recogniti 99.5 3.4E-13 7.4E-18 94.6 8.7 72 17-90 1-72 (72)
31 PLN03213 repressor of silencin 99.5 1.6E-13 3.5E-18 129.8 9.2 79 12-94 7-87 (759)
32 KOG0107 Alternative splicing f 99.4 2E-13 4.3E-18 114.2 7.5 79 14-97 9-87 (195)
33 TIGR01628 PABP-1234 polyadenyl 99.4 3.3E-13 7.2E-18 133.5 10.0 85 12-97 282-366 (562)
34 KOG0111 Cyclophilin-type pepti 99.4 1E-13 2.2E-18 119.7 5.2 91 11-101 6-96 (298)
35 smart00360 RRM RNA recognition 99.4 5.9E-13 1.3E-17 93.0 8.0 71 20-90 1-71 (71)
36 PLN03121 nucleic acid binding 99.4 8.5E-13 1.8E-17 116.3 10.0 77 13-93 3-79 (243)
37 KOG0108 mRNA cleavage and poly 99.4 3.7E-13 8.1E-18 128.5 7.9 86 16-101 19-104 (435)
38 COG0724 RNA-binding proteins ( 99.4 1.3E-12 2.9E-17 113.4 10.5 79 15-93 115-193 (306)
39 KOG4205 RNA-binding protein mu 99.4 3.4E-13 7.5E-18 123.8 5.9 138 14-152 5-180 (311)
40 cd00590 RRM RRM (RNA recogniti 99.4 4.6E-12 1E-16 89.3 9.1 74 17-91 1-74 (74)
41 KOG0109 RNA-binding protein LA 99.4 2.3E-12 5E-17 115.2 9.1 131 16-154 3-156 (346)
42 KOG0114 Predicted RNA-binding 99.3 3.9E-12 8.5E-17 98.1 8.4 83 12-97 15-97 (124)
43 KOG0127 Nucleolar protein fibr 99.3 4.8E-12 1E-16 121.1 10.9 140 14-153 4-201 (678)
44 KOG0148 Apoptosis-promoting RN 99.3 3.7E-12 8.1E-17 112.9 9.4 79 10-94 159-237 (321)
45 TIGR01648 hnRNP-R-Q heterogene 99.3 1E-11 2.2E-16 122.8 11.5 77 13-97 231-309 (578)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 9.6E-12 2.1E-16 121.3 10.9 78 13-95 273-351 (481)
47 KOG0144 RNA-binding protein CU 99.3 2.6E-12 5.6E-17 120.0 5.4 84 14-98 123-209 (510)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.4E-11 2.9E-16 120.2 9.8 75 14-94 1-77 (481)
49 TIGR01642 U2AF_lg U2 snRNP aux 99.2 9.8E-11 2.1E-15 114.2 14.2 76 10-92 170-257 (509)
50 KOG0105 Alternative splicing f 99.2 3E-11 6.6E-16 102.1 8.2 80 13-95 4-83 (241)
51 smart00361 RRM_1 RNA recogniti 99.2 3.5E-11 7.6E-16 87.1 7.3 61 29-89 2-69 (70)
52 KOG0145 RNA-binding protein EL 99.2 6.4E-11 1.4E-15 104.7 9.8 86 9-94 272-357 (360)
53 KOG0127 Nucleolar protein fibr 99.2 5.8E-11 1.3E-15 113.8 8.6 83 15-98 117-199 (678)
54 PF13893 RRM_5: RNA recognitio 99.2 1.1E-10 2.5E-15 80.4 7.5 56 32-92 1-56 (56)
55 KOG0147 Transcriptional coacti 99.1 5.1E-11 1.1E-15 114.3 6.4 79 16-94 279-357 (549)
56 KOG0131 Splicing factor 3b, su 99.1 7.1E-11 1.5E-15 99.5 5.4 83 14-96 95-178 (203)
57 KOG4208 Nucleolar RNA-binding 99.1 4E-10 8.6E-15 96.7 10.1 85 11-95 45-130 (214)
58 KOG0146 RNA-binding protein ET 99.1 5.2E-11 1.1E-15 105.7 4.7 87 10-96 280-366 (371)
59 KOG0415 Predicted peptidyl pro 99.1 1.5E-10 3.2E-15 106.2 7.7 83 12-94 236-318 (479)
60 KOG0117 Heterogeneous nuclear 99.1 1.2E-10 2.7E-15 109.3 7.2 78 11-96 255-332 (506)
61 KOG0123 Polyadenylate-binding 99.1 5E-10 1.1E-14 105.8 10.2 78 15-95 76-153 (369)
62 KOG4206 Spliceosomal protein s 99.1 4.5E-10 9.7E-15 97.5 8.6 82 12-96 6-91 (221)
63 KOG4212 RNA-binding protein hn 99.1 4.7E-10 1E-14 105.2 8.7 82 12-94 41-123 (608)
64 KOG0110 RNA-binding protein (R 99.0 1.6E-09 3.4E-14 106.7 8.9 78 16-93 516-596 (725)
65 KOG0147 Transcriptional coacti 99.0 9.6E-10 2.1E-14 105.6 6.8 178 10-191 174-400 (549)
66 KOG0124 Polypyrimidine tract-b 98.9 1.6E-09 3.6E-14 99.7 6.9 85 12-96 207-291 (544)
67 KOG0153 Predicted RNA-binding 98.9 4.9E-09 1.1E-13 96.0 9.7 82 7-94 220-302 (377)
68 KOG4205 RNA-binding protein mu 98.9 2.9E-09 6.3E-14 98.0 7.9 83 14-97 96-178 (311)
69 KOG0123 Polyadenylate-binding 98.9 5.1E-09 1.1E-13 99.0 9.5 120 16-143 2-143 (369)
70 KOG0146 RNA-binding protein ET 98.9 2.4E-09 5.1E-14 95.2 6.3 81 13-94 17-100 (371)
71 KOG0110 RNA-binding protein (R 98.9 1.7E-09 3.6E-14 106.6 4.9 85 13-97 611-695 (725)
72 KOG0132 RNA polymerase II C-te 98.9 3.8E-09 8.2E-14 104.9 7.0 76 15-96 421-496 (894)
73 KOG4661 Hsp27-ERE-TATA-binding 98.9 7.3E-09 1.6E-13 100.0 8.4 85 13-97 403-487 (940)
74 KOG0109 RNA-binding protein LA 98.8 9.6E-09 2.1E-13 92.3 5.6 76 12-95 75-150 (346)
75 KOG0533 RRM motif-containing p 98.7 2.5E-08 5.4E-13 88.8 7.7 85 11-96 79-163 (243)
76 KOG4212 RNA-binding protein hn 98.7 1.4E-08 3.1E-13 95.5 6.4 78 10-92 531-608 (608)
77 KOG0116 RasGAP SH3 binding pro 98.7 6.3E-08 1.4E-12 92.5 8.8 83 12-95 285-367 (419)
78 KOG0226 RNA-binding proteins [ 98.6 2.7E-08 5.9E-13 87.9 4.1 83 11-93 186-268 (290)
79 KOG4209 Splicing factor RNPS1, 98.6 6.9E-08 1.5E-12 85.7 6.2 83 10-93 96-178 (231)
80 KOG1457 RNA binding protein (c 98.6 4.4E-07 9.6E-12 79.1 10.3 86 12-97 31-120 (284)
81 KOG1548 Transcription elongati 98.5 2.9E-07 6.3E-12 84.5 7.7 82 12-94 131-220 (382)
82 KOG4211 Splicing factor hnRNP- 98.5 1.1E-06 2.5E-11 83.8 11.6 79 11-93 6-84 (510)
83 PF04059 RRM_2: RNA recognitio 98.4 1.1E-06 2.5E-11 67.7 8.0 79 16-94 2-86 (97)
84 KOG0151 Predicted splicing reg 98.4 6.4E-07 1.4E-11 88.7 8.1 84 11-94 170-256 (877)
85 KOG0106 Alternative splicing f 98.4 1.9E-07 4.1E-12 81.7 3.8 71 16-94 2-72 (216)
86 KOG4660 Protein Mei2, essentia 98.3 3.3E-07 7.2E-12 88.6 3.5 72 12-88 72-143 (549)
87 KOG4454 RNA binding protein (R 98.3 3.6E-07 7.8E-12 79.4 2.2 80 12-93 6-85 (267)
88 KOG0120 Splicing factor U2AF, 98.0 3.3E-06 7.1E-11 82.0 3.5 82 13-94 287-368 (500)
89 KOG4210 Nuclear localization s 98.0 7.8E-06 1.7E-10 74.8 4.3 82 14-96 183-265 (285)
90 KOG1190 Polypyrimidine tract-b 97.9 2.9E-05 6.3E-10 73.0 7.7 75 15-94 297-372 (492)
91 KOG4849 mRNA cleavage factor I 97.9 8.7E-06 1.9E-10 75.1 4.1 80 14-93 79-160 (498)
92 KOG1995 Conserved Zn-finger pr 97.9 1.9E-05 4.2E-10 73.0 5.1 90 7-96 58-155 (351)
93 PF11608 Limkain-b1: Limkain b 97.6 0.00013 2.7E-09 54.7 5.7 68 16-93 3-75 (90)
94 KOG4211 Splicing factor hnRNP- 97.6 0.00014 3.1E-09 69.8 7.5 79 13-93 101-180 (510)
95 KOG0105 Alternative splicing f 97.6 0.00064 1.4E-08 58.1 9.5 78 7-91 107-186 (241)
96 KOG1457 RNA binding protein (c 97.5 7.5E-05 1.6E-09 65.4 3.8 68 11-82 206-273 (284)
97 KOG4206 Spliceosomal protein s 97.5 0.00032 7E-09 61.3 7.6 77 12-93 143-220 (221)
98 KOG0106 Alternative splicing f 97.5 0.00015 3.2E-09 63.6 5.1 75 11-93 95-169 (216)
99 PF08777 RRM_3: RNA binding mo 97.4 0.00046 1E-08 54.0 6.1 71 15-91 1-76 (105)
100 COG5175 MOT2 Transcriptional r 97.4 0.00038 8.3E-09 64.2 6.4 80 14-93 113-201 (480)
101 KOG4307 RNA binding protein RB 97.1 0.0014 3E-08 65.5 7.5 77 14-91 865-943 (944)
102 KOG0129 Predicted RNA-binding 97.1 0.0013 2.9E-08 63.6 7.2 69 8-76 363-432 (520)
103 KOG3152 TBP-binding protein, a 97.1 0.00028 6.1E-09 62.8 1.9 73 14-86 73-157 (278)
104 KOG1456 Heterogeneous nuclear 97.0 0.0036 7.8E-08 58.7 8.9 81 9-94 281-362 (494)
105 KOG0120 Splicing factor U2AF, 97.0 0.0019 4.1E-08 63.1 7.0 65 31-95 425-492 (500)
106 KOG2314 Translation initiation 97.0 0.0015 3.3E-08 63.9 6.0 79 13-92 56-141 (698)
107 KOG0129 Predicted RNA-binding 96.9 0.018 3.8E-07 56.0 13.2 119 11-133 255-387 (520)
108 KOG1548 Transcription elongati 96.9 0.0047 1E-07 57.3 8.6 82 9-94 259-351 (382)
109 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.003 6.5E-08 43.2 5.1 52 16-74 2-53 (53)
110 KOG1365 RNA-binding protein Fu 96.7 0.0021 4.5E-08 60.4 4.5 83 11-94 276-361 (508)
111 KOG0128 RNA-binding protein SA 96.7 0.00012 2.6E-09 74.3 -4.0 72 12-84 664-735 (881)
112 KOG2193 IGF-II mRNA-binding pr 96.5 0.0018 3.9E-08 61.4 2.9 78 16-99 2-80 (584)
113 KOG1190 Polypyrimidine tract-b 96.4 0.0085 1.8E-07 56.8 6.4 78 13-94 412-490 (492)
114 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.024 5.3E-07 44.0 7.3 77 15-93 6-90 (100)
115 KOG0128 RNA-binding protein SA 96.2 0.0023 5E-08 65.2 1.8 79 15-94 736-814 (881)
116 KOG2416 Acinus (induces apopto 96.1 0.0053 1.2E-07 60.5 3.8 80 8-93 437-520 (718)
117 KOG1456 Heterogeneous nuclear 95.9 0.043 9.3E-07 51.6 8.8 85 7-96 112-200 (494)
118 PF08675 RNA_bind: RNA binding 95.9 0.038 8.3E-07 41.4 6.8 60 11-79 5-64 (87)
119 KOG0112 Large RNA-binding prot 95.8 0.0091 2E-07 61.3 4.3 78 11-94 451-530 (975)
120 KOG4307 RNA binding protein RB 95.8 0.0092 2E-07 59.9 3.9 81 11-92 430-511 (944)
121 PF08952 DUF1866: Domain of un 95.7 0.032 6.9E-07 46.1 6.2 55 31-94 52-106 (146)
122 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.033 7.1E-07 47.6 6.0 83 12-94 4-97 (176)
123 KOG1855 Predicted RNA-binding 95.5 0.017 3.8E-07 55.0 4.4 70 10-79 226-308 (484)
124 KOG1365 RNA-binding protein Fu 95.3 0.021 4.5E-07 53.9 4.3 74 17-92 163-240 (508)
125 PF10309 DUF2414: Protein of u 95.1 0.12 2.5E-06 36.6 6.5 55 15-77 5-62 (62)
126 KOG2202 U2 snRNP splicing fact 95.0 0.017 3.7E-07 51.7 2.6 65 31-96 84-149 (260)
127 KOG1996 mRNA splicing factor [ 94.6 0.093 2E-06 48.0 6.2 64 30-93 301-365 (378)
128 KOG2068 MOT2 transcription fac 94.0 0.02 4.4E-07 53.0 0.7 79 14-93 76-161 (327)
129 KOG4676 Splicing factor, argin 93.9 0.098 2.1E-06 49.5 5.2 77 17-94 9-88 (479)
130 KOG4210 Nuclear localization s 93.9 0.078 1.7E-06 48.7 4.5 80 13-93 86-166 (285)
131 KOG0115 RNA-binding protein p5 93.8 0.052 1.1E-06 48.7 2.9 76 16-92 32-111 (275)
132 PF07576 BRAP2: BRCA1-associat 92.8 0.99 2.1E-05 35.6 8.6 73 10-84 8-81 (110)
133 KOG0112 Large RNA-binding prot 92.7 0.025 5.4E-07 58.2 -0.7 81 11-92 368-448 (975)
134 PF03880 DbpA: DbpA RNA bindin 91.0 0.82 1.8E-05 33.1 5.9 60 24-92 10-74 (74)
135 PF04847 Calcipressin: Calcipr 90.5 0.72 1.6E-05 39.7 5.9 61 28-94 8-70 (184)
136 KOG2135 Proteins containing th 88.9 0.28 6E-06 47.6 2.4 75 15-96 372-447 (526)
137 KOG4660 Protein Mei2, essentia 88.6 0.66 1.4E-05 45.8 4.7 58 39-96 413-474 (549)
138 KOG2253 U1 snRNP complex, subu 86.8 0.41 9E-06 48.1 2.2 74 10-92 35-108 (668)
139 PF15023 DUF4523: Protein of u 86.7 3 6.5E-05 34.6 6.8 74 12-93 83-160 (166)
140 KOG4285 Mitotic phosphoprotein 82.1 3.1 6.7E-05 38.4 5.5 67 20-94 202-269 (350)
141 KOG4574 RNA-binding protein (c 81.6 0.81 1.8E-05 47.3 1.8 71 19-95 302-374 (1007)
142 PF11767 SET_assoc: Histone ly 79.6 12 0.00026 26.7 6.8 55 26-89 11-65 (66)
143 KOG2591 c-Mpl binding protein, 78.6 3.2 7E-05 41.3 4.7 69 13-88 173-245 (684)
144 KOG4410 5-formyltetrahydrofola 76.1 9.3 0.0002 35.2 6.6 51 11-67 326-377 (396)
145 KOG0804 Cytoplasmic Zn-finger 76.0 8.1 0.00018 37.6 6.5 70 13-84 72-142 (493)
146 KOG0125 Ataxin 2-binding prote 72.7 7.8 0.00017 36.2 5.3 39 113-151 133-177 (376)
147 KOG0226 RNA-binding proteins [ 71.2 4.6 9.9E-05 36.5 3.4 76 14-90 95-173 (290)
148 KOG4676 Splicing factor, argin 64.7 0.75 1.6E-05 43.7 -3.0 65 16-85 152-216 (479)
149 KOG4454 RNA binding protein (R 64.3 1.6 3.5E-05 38.6 -0.9 72 14-86 79-154 (267)
150 KOG4483 Uncharacterized conser 62.7 25 0.00054 33.9 6.6 58 11-75 387-445 (528)
151 KOG2193 IGF-II mRNA-binding pr 59.9 0.5 1.1E-05 45.4 -5.1 76 14-93 79-155 (584)
152 COG0724 RNA-binding proteins ( 49.2 39 0.00085 28.4 5.3 66 10-75 220-285 (306)
153 PF07530 PRE_C2HC: Associated 48.0 33 0.00071 24.5 3.8 61 30-93 2-63 (68)
154 smart00596 PRE_C2HC PRE_C2HC d 40.5 41 0.00088 24.3 3.3 61 30-93 2-63 (69)
155 KOG4452 Predicted membrane pro 39.9 25 0.00054 25.3 2.1 27 199-225 10-36 (79)
156 KOG2891 Surface glycoprotein [ 39.9 26 0.00057 32.2 2.8 68 15-82 149-247 (445)
157 KOG2318 Uncharacterized conser 36.1 1.4E+02 0.0031 30.2 7.3 80 12-91 171-304 (650)
158 PF07804 HipA_C: HipA-like C-t 33.1 21 0.00045 25.8 0.9 14 257-270 48-61 (79)
159 KOG4019 Calcineurin-mediated s 30.6 41 0.0009 29.0 2.4 72 17-94 12-89 (193)
160 COG5193 LHP1 La protein, small 30.5 26 0.00056 33.7 1.2 61 15-75 174-244 (438)
161 PF03468 XS: XS domain; Inter 30.1 41 0.00089 26.6 2.2 46 27-75 29-75 (116)
162 PF10567 Nab6_mRNP_bdg: RNA-re 29.9 90 0.0019 28.9 4.5 80 14-93 14-106 (309)
163 KOG2295 C2H2 Zn-finger protein 29.1 8.1 0.00018 38.5 -2.4 72 13-84 229-300 (648)
164 PLN03134 glycine-rich RNA-bind 29.0 1.1E+02 0.0025 24.7 4.7 38 112-149 72-115 (144)
165 PRK11634 ATP-dependent RNA hel 28.6 1E+02 0.0022 31.5 5.2 68 17-93 488-561 (629)
166 KOG0111 Cyclophilin-type pepti 26.9 62 0.0013 28.9 2.9 44 111-154 47-96 (298)
167 KOG4365 Uncharacterized conser 25.0 17 0.00038 35.3 -0.9 79 15-94 3-81 (572)
168 PF15513 DUF4651: Domain of un 24.9 1.4E+02 0.0031 21.1 3.9 18 30-47 9-26 (62)
169 PF03439 Spt5-NGN: Early trans 23.7 2.1E+02 0.0046 20.9 4.9 38 41-83 33-70 (84)
170 KOG1295 Nonsense-mediated deca 23.6 1.2E+02 0.0027 28.9 4.4 69 14-82 6-77 (376)
171 PF09707 Cas_Cas2CT1978: CRISP 22.7 1.3E+02 0.0028 22.6 3.6 47 16-65 26-72 (86)
172 TIGR01743 purR_Bsub pur operon 22.3 91 0.002 28.4 3.2 48 222-269 47-96 (268)
173 PF02714 DUF221: Domain of unk 21.8 75 0.0016 29.0 2.6 32 60-93 1-32 (325)
No 1
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.2e-22 Score=183.42 Aligned_cols=189 Identities=25% Similarity=0.367 Sum_probs=140.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccC
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~ 95 (270)
|++|||.+.+++.|+.|+..|..||.|++|.+.||+.|+++||||||+|+-+|.|+.|++.|||..++||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999865433
Q ss_pred Cchhhh----------ccc------------------------------cccCCCCCCCCcceEEEcCCchHHHHHHHH-
Q 024258 96 PNAERI----------KEG------------------------------LLNHSRDRSTGQGVAVLGEDTEMITEIEII- 134 (270)
Q Consensus 96 ~~~~~~----------~~~------------------------------~~~~~~~~~~~rg~~~v~~~~~~~~~~~~~- 134 (270)
+..... ..+ .+.......+++||..+.+.+...+++..+
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 322110 000 122223344555555555667777777666
Q ss_pred ---hCCcEEEeccccccccCCCCcccccccccccCCccCChHHHHHHHHHHHHhhhhccc--cCCCccccCCCCCCchh
Q 024258 135 ---EGGVTVEAGIGTNVTDTVGGIEITVDEVEAEVPVLITPEAVAEADMMIIAGVLVDRL--AVPPQLSIAPVPAGVFP 208 (270)
Q Consensus 135 ---~~G~~~~v~~~~~~~~~~gG~~~~~De~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 208 (270)
++|.+.++++.....+..- .+.+...+++...+ ..++++||+|+.++++.... .++.+...+|.+...+|
T Consensus 274 lFDLGGQyLRVGk~vTPP~aLl-~Pat~s~~P~aaaV---AaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTPPDALL-QPATVSAIPAAAAV---AAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hhhcccceEecccccCCCchhc-CCCCcccCchHHHH---HHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 8899999998776655542 22233334444444 78899999999998877765 44445555666666666
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.84 E-value=1e-19 Score=179.53 Aligned_cols=172 Identities=24% Similarity=0.354 Sum_probs=128.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
...++|||+||++++++++|+++|++||.|.+|++++|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCchhhh---------c-cc----------------------------cccCCCCCCCCcceEEEcCCch--HHHHHH
Q 024258 93 KYGPNAERI---------K-EG----------------------------LLNHSRDRSTGQGVAVLGEDTE--MITEIE 132 (270)
Q Consensus 93 ~~~~~~~~~---------~-~~----------------------------~~~~~~~~~~~rg~~~v~~~~~--~~~~~~ 132 (270)
...+..... . .. +...+...+..+||+|+.|.+. +..++.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 432111000 0 00 1112233456789999999843 333433
Q ss_pred HH----hCCcEEEeccccccccCCCCcccccccccccCCccCChHHHHHHHHHHHHhhhh
Q 024258 133 II----EGGVTVEAGIGTNVTDTVGGIEITVDEVEAEVPVLITPEAVAEADMMIIAGVLV 188 (270)
Q Consensus 133 ~~----~~G~~~~v~~~~~~~~~~gG~~~~~De~~~~~~~~~~p~~~~~a~~~~~~~~~~ 188 (270)
.+ ++|+.++++++........+.... ..+.+.. ..+.+++.|++++++.++.
T Consensus 265 amNg~elgGr~LrV~kAi~pP~~~~~pa~~-~~~p~aa---a~Aaaaa~a~~~a~~~~~~ 320 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPPDALLQPATV-SAIPAAA---AVAAAAATAKIMAAEAVAG 320 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCccccCCCCCC-CCCchHH---HHHHHHhhhhhhhhhhhhc
Confidence 33 789999999888766665544332 2233332 2377888888888876543
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=2.3e-18 Score=142.30 Aligned_cols=87 Identities=33% Similarity=0.532 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
....++|||+|||++++|++|+++|++||.|.++.++.|+.+++++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCch
Q 024258 92 AKYGPNA 98 (270)
Q Consensus 92 a~~~~~~ 98 (270)
+.+++..
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9865443
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=8.7e-18 Score=157.10 Aligned_cols=87 Identities=29% Similarity=0.469 Sum_probs=81.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
..+....++|||+|||++++|++|+++|++||+|.+|++++|+.+++++|||||+|.++++|++|++.||+..+.+++|+
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 34666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccC
Q 024258 89 VQFAKYG 95 (270)
Q Consensus 89 V~~a~~~ 95 (270)
|.++++.
T Consensus 181 V~~a~p~ 187 (346)
T TIGR01659 181 VSYARPG 187 (346)
T ss_pred eeccccc
Confidence 9998753
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=2.4e-17 Score=153.14 Aligned_cols=83 Identities=29% Similarity=0.511 Sum_probs=79.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+.++|||+|||++++|++|+++|++||+|.+|++++|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q 024258 94 YGP 96 (270)
Q Consensus 94 ~~~ 96 (270)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 544
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=8.4e-17 Score=149.52 Aligned_cols=85 Identities=29% Similarity=0.462 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
...+++|||+|||+++++++|+++|++||.|.++++++|+.|+++||||||+|.+.++|.+|++.|||..++||.|+|.|
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 024258 92 AKYGP 96 (270)
Q Consensus 92 a~~~~ 96 (270)
...+.
T Consensus 346 ~~~~~ 350 (352)
T TIGR01661 346 KTNKA 350 (352)
T ss_pred ccCCC
Confidence 87554
No 7
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.5e-16 Score=148.47 Aligned_cols=158 Identities=25% Similarity=0.381 Sum_probs=120.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE-eccEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-DGREITV 89 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l-~Gr~I~V 89 (270)
....+|.||||.||.++.|++|..+|++.|+|-+++++.|+.+|.+||||||.|.+.++|+.|++.||+++| .|+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999 6899988
Q ss_pred EEcccCC----------chh-hhcc-------c-----cccCCCCCCCCcceEEEcCCchHHHHHHH--HhCCcEEEecc
Q 024258 90 QFAKYGP----------NAE-RIKE-------G-----LLNHSRDRSTGQGVAVLGEDTEMITEIEI--IEGGVTVEAGI 144 (270)
Q Consensus 90 ~~a~~~~----------~~~-~~~~-------~-----~~~~~~~~~~~rg~~~v~~~~~~~~~~~~--~~~G~~~~v~~ 144 (270)
+.+.... +.+ ...+ + -.....++.++|||.|+.+.+....+... +++|+
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~------ 232 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK------ 232 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc------
Confidence 8764211 111 0000 0 12344567889999999999666655333 34443
Q ss_pred ccccccCCCCcccccccccccCCccCChHHHHHHHHH
Q 024258 145 GTNVTDTVGGIEITVDEVEAEVPVLITPEAVAEADMM 181 (270)
Q Consensus 145 ~~~~~~~~gG~~~~~De~~~~~~~~~~p~~~~~a~~~ 181 (270)
...+|..+++||.+++..+ +++.|++.|++
T Consensus 233 -----~klwgn~~tVdWAep~~e~--ded~ms~VKvL 262 (506)
T KOG0117|consen 233 -----IKLWGNAITVDWAEPEEEP--DEDTMSKVKVL 262 (506)
T ss_pred -----eeecCCcceeeccCcccCC--Chhhhhheeee
Confidence 3456778888887766644 44466666654
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=7.5e-16 Score=135.64 Aligned_cols=127 Identities=24% Similarity=0.326 Sum_probs=104.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
....+.+.|.-||..+++|+++.+|+..|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||..+..+.|+|+|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhcc---------------------------ccccCCCCCCCCcceEEEcCC-chHHHHHHHHhCCc
Q 024258 92 AKYGPNAERIKE---------------------------GLLNHSRDRSTGQGVAVLGED-TEMITEIEIIEGGV 138 (270)
Q Consensus 92 a~~~~~~~~~~~---------------------------~~~~~~~~~~~~rg~~~v~~~-~~~~~~~~~~~~G~ 138 (270)
+++....-+... .+...+...+.++|.+|++|+ ...+++..+-++|+
T Consensus 118 ARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred ccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 986543322111 133344566889999999999 34444444446664
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.64 E-value=2.4e-15 Score=148.74 Aligned_cols=79 Identities=24% Similarity=0.495 Sum_probs=76.0
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccC
Q 024258 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (270)
Q Consensus 17 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~ 95 (270)
+|||+|||++++|++|+++|++||.|.+|++.+|+.|++++|||||+|.+.++|++|++.+|+..+.|+.|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999998643
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.2e-15 Score=108.70 Aligned_cols=70 Identities=34% Similarity=0.702 Sum_probs=67.4
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 18 lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
|||+|||+++++++|+++|++||.+..+.+..+ .+++++|||||+|.+.++|++|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6899999999999999999999999999999999885
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.9e-15 Score=133.66 Aligned_cols=141 Identities=23% Similarity=0.343 Sum_probs=108.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.+..+.-..+||+.|...++-++|++.|.+||+|.++++++|..|+++|||+||.|.+.++|+.||+.|||.=|.+|.|+
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 34455577999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCchhhhccc-------------------------------------cccCCCCCCCCcceEEEcCCchHH--H
Q 024258 89 VQFAKYGPNAERIKEG-------------------------------------LLNHSRDRSTGQGVAVLGEDTEMI--T 129 (270)
Q Consensus 89 V~~a~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~rg~~~v~~~~~~~--~ 129 (270)
-+|+..++........ .....-.--+.+|+.|+.|++... .
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAH 215 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHH
Confidence 9999865522111000 000111223467889999994333 3
Q ss_pred HHHHH----hCCcEEEeccccccc
Q 024258 130 EIEII----EGGVTVEAGIGTNVT 149 (270)
Q Consensus 130 ~~~~~----~~G~~~~v~~~~~~~ 149 (270)
++..+ ++|+.+++.+++...
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCC
Confidence 33333 778888888777643
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.59 E-value=2.3e-14 Score=137.96 Aligned_cols=82 Identities=32% Similarity=0.540 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
..+.++|||+|||+.+++++|+++|++||.|.+|+++.|+.+++++|||||+|.+.++|++|+. |+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999997 999999999999988
Q ss_pred ccc
Q 024258 92 AKY 94 (270)
Q Consensus 92 a~~ 94 (270)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 653
No 13
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=6.5e-15 Score=125.94 Aligned_cols=94 Identities=53% Similarity=0.878 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCe
Q 024258 1 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (270)
Q Consensus 1 ~s~~~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~ 80 (270)
||..+. |++...-.+|-|-||.+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|+++|+|.
T Consensus 1 MS~g~~--PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~ 78 (256)
T KOG4207|consen 1 MSYGRP--PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA 78 (256)
T ss_pred CCCCCC--CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce
Confidence 555544 777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccEEEEEEcccCC
Q 024258 81 VVDGREITVQFAKYGP 96 (270)
Q Consensus 81 ~l~Gr~I~V~~a~~~~ 96 (270)
+++|+.|+|++++...
T Consensus 79 ~ldgRelrVq~arygr 94 (256)
T KOG4207|consen 79 VLDGRELRVQMARYGR 94 (256)
T ss_pred eeccceeeehhhhcCC
Confidence 9999999999987543
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=4.1e-15 Score=129.28 Aligned_cols=82 Identities=26% Similarity=0.539 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
.+..-++||||||+|++..++|+++|++||+|.+..++.|+.||++||||||+|++.++|.+|++. -...|+||+-.|+
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 344567999999999999999999999999999999999999999999999999999999999984 5567899999998
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 876
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=2.2e-14 Score=141.52 Aligned_cols=135 Identities=23% Similarity=0.361 Sum_probs=98.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe-ccEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~-Gr~I~V~ 90 (270)
....++|||+|||++++|++|+++|++||.|.++++++| .+|+++|||||+|.+.++|++|++.||+.++. |+.+.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345799999999999999999999999999999999999 79999999999999999999999999999985 7777776
Q ss_pred EcccCC----------ch-hhh----cc---c-----cccCCCCCCCCcceEEEcCCchHHHHH--HHH------hCCcE
Q 024258 91 FAKYGP----------NA-ERI----KE---G-----LLNHSRDRSTGQGVAVLGEDTEMITEI--EII------EGGVT 139 (270)
Q Consensus 91 ~a~~~~----------~~-~~~----~~---~-----~~~~~~~~~~~rg~~~v~~~~~~~~~~--~~~------~~G~~ 139 (270)
++.... .. +.. .. . .........+++||+|+.|.+....+. ..+ +.|+.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 653211 00 000 00 0 011122345678999999995443332 222 34666
Q ss_pred EEeccccc
Q 024258 140 VEAGIGTN 147 (270)
Q Consensus 140 ~~v~~~~~ 147 (270)
+.+.++.+
T Consensus 214 I~VdwA~p 221 (578)
T TIGR01648 214 IAVDWAEP 221 (578)
T ss_pred EEEEeecc
Confidence 76665544
No 16
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.1e-14 Score=127.19 Aligned_cols=85 Identities=32% Similarity=0.560 Sum_probs=81.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++|-|.||+.+++|++|+++|.+||.|.++.+.+|+.||.+||||||.|.+.++|.+||+.|||+-+++-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 44467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccC
Q 024258 91 FAKYG 95 (270)
Q Consensus 91 ~a~~~ 95 (270)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99864
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=2.2e-14 Score=134.27 Aligned_cols=84 Identities=37% Similarity=0.571 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec--cEEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REITVQ 90 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G--r~I~V~ 90 (270)
...++|||+|||++++|++|+++|++||+|.++++++|+.+++++|||||+|.+.++|++|++.||+..+.+ ++|+|+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999999866 789999
Q ss_pred EcccCC
Q 024258 91 FAKYGP 96 (270)
Q Consensus 91 ~a~~~~ 96 (270)
++....
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 987543
No 18
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=6.5e-15 Score=117.35 Aligned_cols=82 Identities=29% Similarity=0.555 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
.+.+++||||||++.++|++|.++|+++|+|..|.+-.|+.+..+.|||||+|.+.++|+.|++-++|+.++.+.|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 024258 92 AK 93 (270)
Q Consensus 92 a~ 93 (270)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 65
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.55 E-value=1.8e-14 Score=121.00 Aligned_cols=83 Identities=29% Similarity=0.479 Sum_probs=79.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
+.....+||||||+..++++-|.++|-+.|+|.++++++|+.+..++||||++|.++|+|+.|++-||..++.||+|+|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 887
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.55 E-value=2e-14 Score=142.15 Aligned_cols=84 Identities=15% Similarity=0.330 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
...++|||+||++++++++|+++|+.||.|.++++.+|+.++++||||||+|.+.++|.+|++.||+..++|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 024258 93 KYGP 96 (270)
Q Consensus 93 ~~~~ 96 (270)
..++
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8544
No 21
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=3.5e-14 Score=101.98 Aligned_cols=70 Identities=33% Similarity=0.706 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 18 lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
|||+|||+++++++|+++|+.||.|..+++..++. ++++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999875
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.54 E-value=1.3e-13 Score=134.33 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
...++|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.|++.|||..+.|+.|.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 024258 93 K 93 (270)
Q Consensus 93 ~ 93 (270)
.
T Consensus 373 ~ 373 (509)
T TIGR01642 373 C 373 (509)
T ss_pred c
Confidence 5
No 23
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=115.91 Aligned_cols=93 Identities=30% Similarity=0.535 Sum_probs=87.5
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe
Q 024258 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (270)
Q Consensus 4 ~~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~ 83 (270)
..+++|...-.+.-|||.|+....+|+++...|..||+|+++.+..|+.||..||||.|+|.+.++|++|+.++||..+.
T Consensus 61 ~~~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll 140 (170)
T KOG0130|consen 61 DMRPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL 140 (170)
T ss_pred ccCCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh
Confidence 44677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEcccCC
Q 024258 84 GREITVQFAKYGP 96 (270)
Q Consensus 84 Gr~I~V~~a~~~~ 96 (270)
|..+.|.|+..+.
T Consensus 141 ~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 141 GQNVSVDWCFVKG 153 (170)
T ss_pred CCceeEEEEEecC
Confidence 9999999997544
No 24
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.9e-15 Score=125.82 Aligned_cols=87 Identities=33% Similarity=0.576 Sum_probs=82.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
|...+..++.-|||||||+..||.||-.+|++||+|.+|.+++|+.||+++||||+.|++..+.-.|+..|||..+.||.
T Consensus 27 SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 27 SWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRT 106 (219)
T ss_pred chhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceeccee
Confidence 55677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcc
Q 024258 87 ITVQFAK 93 (270)
Q Consensus 87 I~V~~a~ 93 (270)
|+|....
T Consensus 107 irVDHv~ 113 (219)
T KOG0126|consen 107 IRVDHVS 113 (219)
T ss_pred EEeeecc
Confidence 9998764
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=8.7e-14 Score=129.76 Aligned_cols=129 Identities=26% Similarity=0.336 Sum_probs=99.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE-e--ccE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-D--GRE 86 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l-~--Gr~ 86 (270)
.++.+.-++|||.+|..++|+||+++|++||.|.+|.+++|+.|+.++|||||.|.+.++|.+|+.+||..+. . ..+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 3446678999999999999999999999999999999999999999999999999999999999999999864 3 467
Q ss_pred EEEEEcccCCch---hhhcc------------------------ccccCCCCCCCCcceEEEcCCc-hHHHHHHHHhCCc
Q 024258 87 ITVQFAKYGPNA---ERIKE------------------------GLLNHSRDRSTGQGVAVLGEDT-EMITEIEIIEGGV 138 (270)
Q Consensus 87 I~V~~a~~~~~~---~~~~~------------------------~~~~~~~~~~~~rg~~~v~~~~-~~~~~~~~~~~G~ 138 (270)
+.|+++..+.++ +++.. ....-+...+.+||.+|+.|.. +.+....+.++|.
T Consensus 109 vqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 109 VQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred eeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 889998755444 22100 0123345567789999999993 3333334445543
No 26
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.5e-13 Score=122.57 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
..++|||+|||+.++|++|+++|+.||+|.+|.+++++. ++|||||+|.++++++.|+. |||..+.|+.|+|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 367999999999999999999999999999999998853 57999999999999999996 99999999999999986
Q ss_pred c
Q 024258 94 Y 94 (270)
Q Consensus 94 ~ 94 (270)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 3
No 27
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=8.9e-14 Score=125.90 Aligned_cols=81 Identities=38% Similarity=0.566 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
...++|+|.|+|+...|-||+.+|.+||.|.+|.|+.+ ..-|||||||+|++.++|++|-++|||..+.||+|.|+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 34579999999999999999999999999999999977 3568999999999999999999999999999999999998
Q ss_pred ccC
Q 024258 93 KYG 95 (270)
Q Consensus 93 ~~~ 95 (270)
...
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 743
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.47 E-value=4e-13 Score=129.38 Aligned_cols=81 Identities=33% Similarity=0.644 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
..++|||+|||+.+++++|+++|++||.|.+|.+.+++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 024258 94 Y 94 (270)
Q Consensus 94 ~ 94 (270)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 29
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.5e-13 Score=123.13 Aligned_cols=81 Identities=32% Similarity=0.580 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.+-+||||+-|+++++|..|+..|+.||.|+.|.+++|+.||+++|||||+|+++.+...|.+.-+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred c
Q 024258 93 K 93 (270)
Q Consensus 93 ~ 93 (270)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 5
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=3.4e-13 Score=94.64 Aligned_cols=72 Identities=39% Similarity=0.741 Sum_probs=67.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 17 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
+|||+|||.++++++|+++|++||.+..+.+..++ +.++|+|||+|.+.++|+.|++.+++..+.|+++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7889999999999999999999999999999998873
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=1.6e-13 Score=129.81 Aligned_cols=79 Identities=24% Similarity=0.335 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCH--HHHHHHHHhcCCeeEeccEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYA--DEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~--e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
.....+||||||++.+++++|+..|+.||.|.++.|+ +.+| ||||||+|.+. .+..+|++.|||..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3456899999999999999999999999999999999 4467 99999999987 7899999999999999999999
Q ss_pred EEccc
Q 024258 90 QFAKY 94 (270)
Q Consensus 90 ~~a~~ 94 (270)
+.+++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99874
No 32
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2e-13 Score=114.17 Aligned_cols=79 Identities=32% Similarity=0.542 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
-.++||||||+..+++.||+..|..||.+.+|.+-+++ .|||||+|+++.+|+.|+..|+|..|.|..|+|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 47899999999999999999999999999999987654 8999999999999999999999999999999999988
Q ss_pred cCCc
Q 024258 94 YGPN 97 (270)
Q Consensus 94 ~~~~ 97 (270)
..+.
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5543
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.44 E-value=3.3e-13 Score=133.49 Aligned_cols=85 Identities=29% Similarity=0.486 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
....++|||+||++++++++|+++|++||.|.+++++.| .+|+++|||||+|.+.++|.+|++.|||..++|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999999999999999999999999999999999 6899999999999999999999999999999999999999
Q ss_pred cccCCc
Q 024258 92 AKYGPN 97 (270)
Q Consensus 92 a~~~~~ 97 (270)
+..+..
T Consensus 361 a~~k~~ 366 (562)
T TIGR01628 361 AQRKEQ 366 (562)
T ss_pred ccCcHH
Confidence 985543
No 34
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1e-13 Score=119.69 Aligned_cols=91 Identities=30% Similarity=0.410 Sum_probs=84.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++||||+|..+++|.-|...|-.||.|.+|+++.|-.++++||||||+|...|+|.+|+..||+.++.||.|+|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 45577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCchhhh
Q 024258 91 FAKYGPNAERI 101 (270)
Q Consensus 91 ~a~~~~~~~~~ 101 (270)
+++|.+-.+..
T Consensus 86 ~AkP~kikegs 96 (298)
T KOG0111|consen 86 LAKPEKIKEGS 96 (298)
T ss_pred ecCCccccCCC
Confidence 99976544443
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=5.9e-13 Score=92.97 Aligned_cols=71 Identities=39% Similarity=0.738 Sum_probs=67.2
Q ss_pred EcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 20 VLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 20 VgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
|+|||..+++++|+++|++||.|..+.+..++.+++++|||||+|.+.++|..|++.+++..++|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988889999999999999999999999999999999998874
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=8.5e-13 Score=116.26 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
..+++|||+||++.++|++|+++|+.||+|.+|++++| ++.+|||||+|.++++++.|+. |+|..|.++.|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 45789999999999999999999999999999999988 4556899999999999999996 9999999999999876
Q ss_pred c
Q 024258 93 K 93 (270)
Q Consensus 93 ~ 93 (270)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 37
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=3.7e-13 Score=128.53 Aligned_cols=86 Identities=31% Similarity=0.598 Sum_probs=81.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccC
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~ 95 (270)
+.+||||+|++++|++|..+|+..|.|.+++++.|+.||+++||||++|.+.++++.|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred Cchhhh
Q 024258 96 PNAERI 101 (270)
Q Consensus 96 ~~~~~~ 101 (270)
+.+++.
T Consensus 99 ~~~~~~ 104 (435)
T KOG0108|consen 99 KNAERS 104 (435)
T ss_pred chhHHH
Confidence 655544
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=1.3e-12 Score=113.38 Aligned_cols=79 Identities=42% Similarity=0.737 Sum_probs=76.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
.++|||+|||+.+++++|+++|.+||.+..+.+..++.+++++|||||+|.+.+++..|++.+++..+.|++|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5999999999999999999999999999999999999899999999999999999999999999999999999999965
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.39 E-value=3.4e-13 Score=123.83 Aligned_cols=138 Identities=21% Similarity=0.337 Sum_probs=111.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+.+++|||+|+|+++++.|+++|++||+|.+|.+++|+.+++++||+||+|.+.+...+++. ...+.++|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 78999999999999999999999999999999999999999999999999999999999987 47788999999998887
Q ss_pred cCCchhhhccc---------------------------------cccCCCCCCCCcceEEEcCCchHHHHHHHH-----h
Q 024258 94 YGPNAERIKEG---------------------------------LLNHSRDRSTGQGVAVLGEDTEMITEIEII-----E 135 (270)
Q Consensus 94 ~~~~~~~~~~~---------------------------------~~~~~~~~~~~rg~~~v~~~~~~~~~~~~~-----~ 135 (270)
+.......... ....+....+.+||+++.++.+..-+.... +
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~ 163 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDF 163 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeee
Confidence 54422221110 133446677889999999995443332222 8
Q ss_pred CCcEEEeccccccccCC
Q 024258 136 GGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 136 ~G~~~~v~~~~~~~~~~ 152 (270)
+|+.++++++.++....
T Consensus 164 ~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 164 NGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cCceeeEeeccchhhcc
Confidence 99999999998865443
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=4.6e-12 Score=89.25 Aligned_cols=74 Identities=42% Similarity=0.734 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 17 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
+|+|+|||+.+++++++++|+.+|.+..+.+..++.+ +++|+|||+|.+.++|..|++.+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887654 7799999999999999999999999999999998864
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=2.3e-12 Score=115.22 Aligned_cols=131 Identities=23% Similarity=0.324 Sum_probs=100.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccC
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~ 95 (270)
.++||||||.++++.+|+.+|++||+|.+|.|+++ ||||..++...++.|++.|||.+|+|..|.|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999876 9999999999999999999999999999999999866
Q ss_pred Cchhhhcc-cc----------------ccCCCCCCCCcceEEEcCC--chHHHHHHHH----hCCcEEEeccccccccCC
Q 024258 96 PNAERIKE-GL----------------LNHSRDRSTGQGVAVLGED--TEMITEIEII----EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 96 ~~~~~~~~-~~----------------~~~~~~~~~~rg~~~v~~~--~~~~~~~~~~----~~G~~~~v~~~~~~~~~~ 152 (270)
.+...+.. ++ ...-..-.--+++.|+.|+ .++.+++..+ ++|+.+.+.-.+++-.+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccC
Confidence 33221110 00 0000111123577888887 6666666444 889999888777766664
Q ss_pred CC
Q 024258 153 GG 154 (270)
Q Consensus 153 gG 154 (270)
.|
T Consensus 155 pg 156 (346)
T KOG0109|consen 155 PG 156 (346)
T ss_pred CC
Confidence 44
No 42
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=3.9e-12 Score=98.08 Aligned_cols=83 Identities=33% Similarity=0.511 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
+.-.+-|||.|||+++|.++..++|.+||.|..|++-..+. .+|.|||.|++..+|.+|++.|+|..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34467899999999999999999999999999999976654 499999999999999999999999999999999999
Q ss_pred cccCCc
Q 024258 92 AKYGPN 97 (270)
Q Consensus 92 a~~~~~ 97 (270)
..+...
T Consensus 92 yq~~~~ 97 (124)
T KOG0114|consen 92 YQPEDA 97 (124)
T ss_pred cCHHHH
Confidence 875443
No 43
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=4.8e-12 Score=121.10 Aligned_cols=140 Identities=19% Similarity=0.317 Sum_probs=110.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
.+.+|||++||++++.++|.++|+.+|+|..+.++.++.++.+|||+||.|.-.++++.|++..++..+.|+.|+|..+.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCchhhhccc----------------------------------------------------cccCCCCCCCCcceEEE
Q 024258 94 YGPNAERIKEG----------------------------------------------------LLNHSRDRSTGQGVAVL 121 (270)
Q Consensus 94 ~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~~rg~~~v 121 (270)
.+...+....+ -...+...+.-.||+|+
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEE
Confidence 54433210000 01223445556699999
Q ss_pred cCCchHHHHHHHH------hCCcEEEeccccccccCCC
Q 024258 122 GEDTEMITEIEII------EGGVTVEAGIGTNVTDTVG 153 (270)
Q Consensus 122 ~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~~~g 153 (270)
.|..-...+.... ++|+++.+.++.++....+
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 9984444333333 7889998988887655543
No 44
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3.7e-12 Score=112.94 Aligned_cols=79 Identities=24% Similarity=0.432 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
....+.|+|||||++..++|+++++.|+.||.|.+|++.++ +||+||.|++.|.|..||..+|+.++.|+.+++
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 34567899999999999999999999999999999999888 799999999999999999999999999999999
Q ss_pred EEccc
Q 024258 90 QFAKY 94 (270)
Q Consensus 90 ~~a~~ 94 (270)
.|-+.
T Consensus 233 sWGKe 237 (321)
T KOG0148|consen 233 SWGKE 237 (321)
T ss_pred ecccc
Confidence 99874
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.32 E-value=1e-11 Score=122.79 Aligned_cols=77 Identities=32% Similarity=0.466 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccC--CCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKY--GKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~--G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...++|||+||++++++++|+++|++| |+|.+|+++ ++||||+|.+.++|++|++.||+.++.|+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346789999999999999999999999 999999875 4599999999999999999999999999999999
Q ss_pred EcccCCc
Q 024258 91 FAKYGPN 97 (270)
Q Consensus 91 ~a~~~~~ 97 (270)
++++...
T Consensus 303 ~Akp~~~ 309 (578)
T TIGR01648 303 LAKPVDK 309 (578)
T ss_pred EccCCCc
Confidence 9986543
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.31 E-value=9.6e-12 Score=121.26 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 13 TDTYSLLVLNITF-RTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 13 ~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
.++++|||+||++ .+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|+.|++.|||..+.|+.|+|++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998873 79999999999999999999999999999999999
Q ss_pred cccC
Q 024258 92 AKYG 95 (270)
Q Consensus 92 a~~~ 95 (270)
++.+
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8643
No 47
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=2.6e-12 Score=120.00 Aligned_cols=84 Identities=29% Similarity=0.540 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCee-Eec--cEEEEE
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV-VDG--REITVQ 90 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~-l~G--r~I~V~ 90 (270)
+.++||||-|+..++|.+++++|++||.|++|.|.+| ..+.+||||||.|++.+.|..|+++|||.. +.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 4789999999999999999999999999999999999 479999999999999999999999999975 554 789999
Q ss_pred EcccCCch
Q 024258 91 FAKYGPNA 98 (270)
Q Consensus 91 ~a~~~~~~ 98 (270)
|+..++.+
T Consensus 202 FADtqkdk 209 (510)
T KOG0144|consen 202 FADTQKDK 209 (510)
T ss_pred ecccCCCc
Confidence 99865543
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.28 E-value=1.4e-11 Score=120.22 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHh--cCCeeEeccEEEEEE
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR--LDGRVVDGREITVQF 91 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~--Lng~~l~Gr~I~V~~ 91 (270)
++++|||+|||++++|++|+++|++||.|.+|.++++ ||||||+|.+.++|++|++. +++..+.|+.|+|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4679999999999999999999999999999999854 68999999999999999986 478899999999999
Q ss_pred ccc
Q 024258 92 AKY 94 (270)
Q Consensus 92 a~~ 94 (270)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 49
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.25 E-value=9.8e-11 Score=114.17 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=63.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccC------------CCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKY------------GKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~------------G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~L 77 (270)
......++|||||||+.+++++|+++|.++ +.|..+.+ ++.+|||||+|.+.++|..|++ |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 345567899999999999999999999875 23444444 3458999999999999999995 9
Q ss_pred CCeeEeccEEEEEEc
Q 024258 78 DGRVVDGREITVQFA 92 (270)
Q Consensus 78 ng~~l~Gr~I~V~~a 92 (270)
+|..+.|+.|+|...
T Consensus 243 ~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 243 DSIIYSNVFLKIRRP 257 (509)
T ss_pred CCeEeeCceeEecCc
Confidence 999999999999754
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=3e-11 Score=102.07 Aligned_cols=80 Identities=26% Similarity=0.426 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
+..++|||||||.++.|.+++.+|.+||.|.+|.+... -....||||+|++..+|+.|+..-+|..++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988433 345679999999999999999999999999999999998
Q ss_pred ccC
Q 024258 93 KYG 95 (270)
Q Consensus 93 ~~~ 95 (270)
..-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 743
No 51
>smart00361 RRM_1 RNA recognition motif.
Probab=99.23 E-value=3.5e-11 Score=87.11 Aligned_cols=61 Identities=28% Similarity=0.508 Sum_probs=55.7
Q ss_pred HHHHHHhhc----cCCCeEEEE-EcccCCC--CCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 29 ADDLFPLFD----KYGKVVDIF-IPRDRRT--GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 29 e~dL~~~F~----~~G~I~~v~-i~~d~~t--g~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
+++|+++|+ +||.|.++. +..++.+ ++++||+||+|.+.++|++|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 7777666 999999999999999999999999999999999876
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=6.4e-11 Score=104.74 Aligned_cols=86 Identities=28% Similarity=0.476 Sum_probs=80.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
|.....+..|||-||.++.+|.-|.++|..||.|.++++++|..|.+.|||+||.+.+-++|..|+..|||..+.+|.+.
T Consensus 272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 272 PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccc
Q 024258 89 VQFAKY 94 (270)
Q Consensus 89 V~~a~~ 94 (270)
|.+...
T Consensus 352 VsFKtn 357 (360)
T KOG0145|consen 352 VSFKTN 357 (360)
T ss_pred EEEecC
Confidence 998653
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=5.8e-11 Score=113.82 Aligned_cols=83 Identities=36% Similarity=0.696 Sum_probs=76.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEccc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~ 94 (270)
.-+|.|+||||.+.+.+|+.+|+.||.|.+|.|++.+ .|+-+|||||.|....+|+.|++.+|+.+|+||+|-|.|+-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5689999999999999999999999999999999765 566679999999999999999999999999999999999976
Q ss_pred CCch
Q 024258 95 GPNA 98 (270)
Q Consensus 95 ~~~~ 98 (270)
+...
T Consensus 196 Kd~y 199 (678)
T KOG0127|consen 196 KDTY 199 (678)
T ss_pred cccc
Confidence 5433
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.17 E-value=1.1e-10 Score=80.41 Aligned_cols=56 Identities=45% Similarity=0.869 Sum_probs=50.9
Q ss_pred HHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 32 LFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 32 L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
|+++|++||+|.++.+..+. +++|||+|.+.++|+.|++.|||..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 689999999999999999999999999999999986
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.15 E-value=5.1e-11 Score=114.25 Aligned_cols=79 Identities=33% Similarity=0.599 Sum_probs=75.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEccc
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~ 94 (270)
.++|||||.++++|++|+.+|+.||.|..|.+.+|..||+++||+|++|.+.++|.+|+++|||.++-|+.|+|.....
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 3499999999999999999999999999999999988999999999999999999999999999999999999987653
No 56
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.12 E-value=7.1e-11 Score=99.49 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDI-FIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v-~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
-+.++||+||.++++|..|...|+.||.+.+. +++++..||+++||||+.|.+.+.+.+|++.+||..+.+++++|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 35799999999999999999999999998765 89999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 024258 93 KYGP 96 (270)
Q Consensus 93 ~~~~ 96 (270)
..+.
T Consensus 175 ~k~~ 178 (203)
T KOG0131|consen 175 FKKD 178 (203)
T ss_pred EecC
Confidence 8443
No 57
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.12 E-value=4e-10 Score=96.67 Aligned_cols=85 Identities=19% Similarity=0.358 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccC-CCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKY-GKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
+.....-+|++.+|.-..+.++..+|.+| |.+...++.+++.||.|||||||+|++++.|+-|-+.||++.+.++.+.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33445578999999999999999999998 77888899999999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 024258 90 QFAKYG 95 (270)
Q Consensus 90 ~~a~~~ 95 (270)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 998765
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=5.2e-11 Score=105.67 Aligned_cols=87 Identities=21% Similarity=0.376 Sum_probs=82.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
.+..++|+|||-.||.+..+.+|...|-.||.|.+.++..|+.|+.+|.|+||.|.++.+++.||.+|||..|+-++++|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 024258 90 QFAKYGP 96 (270)
Q Consensus 90 ~~a~~~~ 96 (270)
...+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9877554
No 59
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.5e-10 Score=106.18 Aligned_cols=83 Identities=31% Similarity=0.545 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
.++.+.|||-.|++-++.+||+-+|+.||.|.+|.+++|+.||.+..||||+|.+.+++++|.-+|++..|++++|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 024258 92 AKY 94 (270)
Q Consensus 92 a~~ 94 (270)
+.+
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 864
No 60
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.2e-10 Score=109.29 Aligned_cols=78 Identities=35% Similarity=0.532 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+..-|||+||+.++||+.|++.|++||.|..|+.++| ||||.|.+.++|.+|++.+||++|+|..|.|.
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVT 326 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEE
Confidence 4456678999999999999999999999999999998877 99999999999999999999999999999999
Q ss_pred EcccCC
Q 024258 91 FAKYGP 96 (270)
Q Consensus 91 ~a~~~~ 96 (270)
.+++..
T Consensus 327 LAKP~~ 332 (506)
T KOG0117|consen 327 LAKPVD 332 (506)
T ss_pred ecCChh
Confidence 999654
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=5e-10 Score=105.77 Aligned_cols=78 Identities=23% Similarity=0.564 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEccc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~ 94 (270)
...+||.||+++++..+|..+|+.||+|.+|++..+. +| ++|| ||+|.++++|++|++.+||..+.|++|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 3349999999999999999999999999999999985 55 9999 9999999999999999999999999999987764
Q ss_pred C
Q 024258 95 G 95 (270)
Q Consensus 95 ~ 95 (270)
+
T Consensus 153 ~ 153 (369)
T KOG0123|consen 153 K 153 (369)
T ss_pred h
Confidence 3
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.08 E-value=4.5e-10 Score=97.55 Aligned_cols=82 Identities=30% Similarity=0.480 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHH----hhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFP----LFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~----~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.++..+|||.||+..+..++|+. +|++||+|.+|... .+.+.||-|||.|.+.+.|-.|+++|+|..+.|+.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34455999999999999999888 99999999999875 467899999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|.||+.+.
T Consensus 83 riqyA~s~s 91 (221)
T KOG4206|consen 83 RIQYAKSDS 91 (221)
T ss_pred heecccCcc
Confidence 999998543
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.06 E-value=4.7e-10 Score=105.24 Aligned_cols=82 Identities=30% Similarity=0.435 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhc-cCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFD-KYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
....+.+||.|+|+++.|.+|+.+|. +.|+|..|.+..| .+|++||+|.|+|+++|.+++|++.||.+++.||+|.|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34456799999999999999999997 5799999999999 589999999999999999999999999999999999998
Q ss_pred Eccc
Q 024258 91 FAKY 94 (270)
Q Consensus 91 ~a~~ 94 (270)
....
T Consensus 120 Ed~d 123 (608)
T KOG4212|consen 120 EDHD 123 (608)
T ss_pred ccCc
Confidence 7653
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.6e-09 Score=106.74 Aligned_cols=78 Identities=36% Similarity=0.603 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCC---CcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTG---DSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg---~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
+++||.||++.++.++++..|..+|.|.++.|...+... -|.|||||+|.+.++|+.|++.|+|+.++|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887664322 25599999999999999999999999999999999998
Q ss_pred c
Q 024258 93 K 93 (270)
Q Consensus 93 ~ 93 (270)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 65
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.97 E-value=9.6e-10 Score=105.63 Aligned_cols=178 Identities=20% Similarity=0.265 Sum_probs=122.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
++.++.+++|+..++...++.+|+++|+.+|+|.+|+++.|+.+++++|.+||+|.+.+.+..|+. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 455678899999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred EEcccCCchhhhccc-----------------------------------------cccCCCCCCCCcceEEEcCC--ch
Q 024258 90 QFAKYGPNAERIKEG-----------------------------------------LLNHSRDRSTGQGVAVLGED--TE 126 (270)
Q Consensus 90 ~~a~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~rg~~~v~~~--~~ 126 (270)
......++....... ....+...++.+||+|+.|. .+
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 887544333211000 01122235667777777766 33
Q ss_pred HHHHHHHH----hCCcEEEeccccccccCCCC--cccccccccccCCccCChHHHHHHHHHHHHhhhhccc
Q 024258 127 MITEIEII----EGGVTVEAGIGTNVTDTVGG--IEITVDEVEAEVPVLITPEAVAEADMMIIAGVLVDRL 191 (270)
Q Consensus 127 ~~~~~~~~----~~G~~~~v~~~~~~~~~~gG--~~~~~De~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~ 191 (270)
+..+...+ +.|+.+.+...+.+.++... ...+.|+.+ ...+.. -+...++.|++.+-+..+.
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d--~~gl~~-~~~g~~Ql~~kla~~~~~~ 400 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDD--RQGLSL-GSGGRNQLMAKLAEGKGRS 400 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhh--cccccc-ccccHHHHHHHHhccCCcc
Confidence 33333333 67888887766665555433 223344442 222211 1222667777665544443
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.6e-09 Score=99.75 Aligned_cols=85 Identities=15% Similarity=0.323 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
.+.-++|||..+.++.+|+||+.+|+.||+|.+|.+-+++..+.+|||+|++|.+..+...|+..||-..++|..++|..
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCC
Q 024258 92 AKYGP 96 (270)
Q Consensus 92 a~~~~ 96 (270)
+.-.+
T Consensus 287 ~vTPP 291 (544)
T KOG0124|consen 287 CVTPP 291 (544)
T ss_pred ccCCC
Confidence 76433
No 67
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=4.9e-09 Score=96.00 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=72.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHh-cCCeeEecc
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR-LDGRVVDGR 85 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~-Lng~~l~Gr 85 (270)
-.|++.....+|||+||...++|.+|+.+|.+||+|+++.+... +++|||+|.+.+.|+.|.++ ++...++|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 35778888999999999999999999999999999999998765 57999999999999998774 444567999
Q ss_pred EEEEEEccc
Q 024258 86 EITVQFAKY 94 (270)
Q Consensus 86 ~I~V~~a~~ 94 (270)
+|.|.|..+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999886
No 68
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.92 E-value=2.9e-09 Score=98.01 Aligned_cols=83 Identities=28% Similarity=0.408 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
...++|||+||.++++++++++|.+||.|.++.++.|+.+.+++||+||.|.+++.+++++. .+.+.+.|+.+.|+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999998 58899999999999998
Q ss_pred cCCc
Q 024258 94 YGPN 97 (270)
Q Consensus 94 ~~~~ 97 (270)
++..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 6543
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=5.1e-09 Score=98.95 Aligned_cols=120 Identities=26% Similarity=0.353 Sum_probs=92.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccC
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~ 95 (270)
..+||| ++++|..|.+.|+.+|++.++++-+|. | +.|||||.|.++++|++|++.||...++|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999997 6 9999999999999999999999999999999999999754
Q ss_pred Cchhhhcc-----------------cc----ccCCCCCCCCcceEEEcCC-chHHHHHHHHhCCcEEEec
Q 024258 96 PNAERIKE-----------------GL----LNHSRDRSTGQGVAVLGED-TEMITEIEIIEGGVTVEAG 143 (270)
Q Consensus 96 ~~~~~~~~-----------------~~----~~~~~~~~~~rg~~~v~~~-~~~~~~~~~~~~G~~~~v~ 143 (270)
+..-.... +. ... ......+|+ |+.|+ .+.+.+.....+|....-+
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~-~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVA-TDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEE-EcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 43210000 00 111 112227777 99998 4555555556888766444
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.4e-09 Score=95.24 Aligned_cols=81 Identities=30% Similarity=0.500 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE-e--ccEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-D--GREITV 89 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l-~--Gr~I~V 89 (270)
.+.+++|||-|...-+|||++.+|..||.|.+|.+.+.+ .|.+|||+||.|.+..+|+.||..|||... - ...+.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 367899999999999999999999999999999999985 799999999999999999999999999764 3 367888
Q ss_pred EEccc
Q 024258 90 QFAKY 94 (270)
Q Consensus 90 ~~a~~ 94 (270)
+++.-
T Consensus 96 K~ADT 100 (371)
T KOG0146|consen 96 KFADT 100 (371)
T ss_pred Eeccc
Confidence 98873
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=1.7e-09 Score=106.56 Aligned_cols=85 Identities=29% Similarity=0.534 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
...++|+|+|+|+..+-.+++.+|..||.+.+|+++.....+.++|||||+|-++.+|..|+++|..+.+.||++.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 33689999999999999999999999999999999887667788999999999999999999999999999999999999
Q ss_pred ccCCc
Q 024258 93 KYGPN 97 (270)
Q Consensus 93 ~~~~~ 97 (270)
+....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 86544
No 72
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.86 E-value=3.8e-09 Score=104.92 Aligned_cols=76 Identities=28% Similarity=0.436 Sum_probs=71.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEccc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~ 94 (270)
++|||||+|+.+++|.||..+|+.||+|.+|.++.. +|||||.+....+|++|+.+|+...+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 589999999999999999999999999999998765 79999999999999999999999999999999999985
Q ss_pred CC
Q 024258 95 GP 96 (270)
Q Consensus 95 ~~ 96 (270)
+.
T Consensus 495 ~G 496 (894)
T KOG0132|consen 495 KG 496 (894)
T ss_pred CC
Confidence 43
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.86 E-value=7.3e-09 Score=100.03 Aligned_cols=85 Identities=35% Similarity=0.473 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.-++++||.+|...+...+|+.+|++||+|...+++.+..+--.+.|+||++.+.++|.+||+.||.++++|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999999999999878788999999999999999999999999999999999999
Q ss_pred ccCCc
Q 024258 93 KYGPN 97 (270)
Q Consensus 93 ~~~~~ 97 (270)
+..+.
T Consensus 483 KNEp~ 487 (940)
T KOG4661|consen 483 KNEPG 487 (940)
T ss_pred ccCcc
Confidence 86543
No 74
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.77 E-value=9.6e-09 Score=92.29 Aligned_cols=76 Identities=32% Similarity=0.488 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
...+++++|||+.+.++.++++..|.+||.+.+|.|.+| |+||.|.-.++|..|++.|++.++.|++++|+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 446789999999999999999999999999999999866 999999999999999999999999999999999
Q ss_pred cccC
Q 024258 92 AKYG 95 (270)
Q Consensus 92 a~~~ 95 (270)
+.+.
T Consensus 147 stsr 150 (346)
T KOG0109|consen 147 STSR 150 (346)
T ss_pred eccc
Confidence 8643
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.75 E-value=2.5e-08 Score=88.78 Aligned_cols=85 Identities=27% Similarity=0.467 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
......+|+|.||++.+.++||+++|..||.+..+.+..+ .+|++.|.|-|.|...++|.+|++.+|+..++|+.|.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3444578999999999999999999999999999999888 489999999999999999999999999999999999998
Q ss_pred EcccCC
Q 024258 91 FAKYGP 96 (270)
Q Consensus 91 ~a~~~~ 96 (270)
...+..
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 876443
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.75 E-value=1.4e-08 Score=95.45 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
...++.|+|||+|||++.||..|+.-|..||.|....|+ ..|+++| .|.|.++++|+.|+..|+|..++||.|+|
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 456788999999999999999999999999999999884 4588887 89999999999999999999999999999
Q ss_pred EEc
Q 024258 90 QFA 92 (270)
Q Consensus 90 ~~a 92 (270)
.|.
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 873
No 77
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.68 E-value=6.3e-08 Score=92.45 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
.....+|||+|||.++++++|+++|.+||.|+...|..-...++...||||+|.+.++++.|+++ +...++++++.|+.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34456699999999999999999999999999876655433355559999999999999999996 67788999999998
Q ss_pred cccC
Q 024258 92 AKYG 95 (270)
Q Consensus 92 a~~~ 95 (270)
.+..
T Consensus 364 k~~~ 367 (419)
T KOG0116|consen 364 KRPG 367 (419)
T ss_pred cccc
Confidence 7643
No 78
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.63 E-value=2.7e-08 Score=87.90 Aligned_cols=83 Identities=23% Similarity=0.426 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++||+|.|.-+++++-|-..|.+|-.-...++++|+.||+++||+||.|.+..++..|++.|+|..++.+.|+..
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 44567899999999999999999999999888888999999999999999999999999999999999999999998876
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
.+.
T Consensus 266 kS~ 268 (290)
T KOG0226|consen 266 KSE 268 (290)
T ss_pred hhh
Confidence 554
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.61 E-value=6.9e-08 Score=85.73 Aligned_cols=83 Identities=27% Similarity=0.474 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
....+...+||+|+.+.++.++++..|+.||.+..+.+..|+.++++|||+||+|.+.+.++.++. |+|..+.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 345577899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEcc
Q 024258 90 QFAK 93 (270)
Q Consensus 90 ~~a~ 93 (270)
.+.+
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 8876
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.58 E-value=4.4e-07 Score=79.09 Aligned_cols=86 Identities=16% Similarity=0.290 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEccc-CCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe---ccEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRD-RRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD---GREI 87 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d-~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~---Gr~I 87 (270)
....++|||.+||.++...+|+.+|..|..-+.+.+... +...-.+-+||+.|.+..+|.+|++.|||..++ +..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 344799999999999999999999999977776665432 222234579999999999999999999999984 7889
Q ss_pred EEEEcccCCc
Q 024258 88 TVQFAKYGPN 97 (270)
Q Consensus 88 ~V~~a~~~~~ 97 (270)
+++.++...+
T Consensus 111 hiElAKSNtK 120 (284)
T KOG1457|consen 111 HIELAKSNTK 120 (284)
T ss_pred EeeehhcCcc
Confidence 9999985443
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.51 E-value=2.9e-07 Score=84.51 Aligned_cols=82 Identities=23% Similarity=0.374 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVV--------DIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~--------~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~ 83 (270)
......|||.|||.++|-+++.++|++||-|. .|++.++. .|+.||=|.+.|...++++.|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44567799999999999999999999999875 37888884 5999999999999999999999999999999
Q ss_pred ccEEEEEEccc
Q 024258 84 GREITVQFAKY 94 (270)
Q Consensus 84 Gr~I~V~~a~~ 94 (270)
|+.|+|+.|+.
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999999874
No 82
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.50 E-value=1.1e-06 Score=83.84 Aligned_cols=79 Identities=22% Similarity=0.425 Sum_probs=68.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
+.....-|-+++|||++|++||.+||+.+ .|.++.+.+ .+|+..|=|||+|.+++++++|++ .+...+..|-|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 55667788899999999999999999998 577766554 489999999999999999999998 58888889999987
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
.+.
T Consensus 82 ~~~ 84 (510)
T KOG4211|consen 82 TAG 84 (510)
T ss_pred ccC
Confidence 764
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.43 E-value=1.1e-06 Score=67.73 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=69.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcc--CCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe----ccEEEE
Q 024258 16 YSLLVLNITFRTTADDLFPLFDK--YGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD----GREITV 89 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~--~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~----Gr~I~V 89 (270)
+||.|+|+|-..+.++|.+++.. .|....+-++.|..++.+.|||||.|.+++.+..-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999888864 367778889999999999999999999999999999999999984 567788
Q ss_pred EEccc
Q 024258 90 QFAKY 94 (270)
Q Consensus 90 ~~a~~ 94 (270)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88873
No 84
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.42 E-value=6.4e-07 Score=88.66 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCC---CCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRR---TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~---tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
..+..+.+||+||++.++|+.|-..|..||++.++++++.+. ..+.+-++||-|-+..++++|++.|+|..+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 356678999999999999999999999999999999988754 24567799999999999999999999999999999
Q ss_pred EEEEccc
Q 024258 88 TVQFAKY 94 (270)
Q Consensus 88 ~V~~a~~ 94 (270)
++.|.+.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999853
No 85
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=1.9e-07 Score=81.66 Aligned_cols=71 Identities=28% Similarity=0.530 Sum_probs=66.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEccc
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~ 94 (270)
.++|||+||+.+.+.+++.+|..||.+.++.+. .||+||+|.+..+|+.|+..+|+..+.|.++.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999999884 46999999999999999999999999998899999874
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=3.3e-07 Score=88.56 Aligned_cols=72 Identities=28% Similarity=0.521 Sum_probs=65.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
....++|+|-|||..+++++|+.+|+.||+|+.|+. |-..+|..||+|.|..+|++|+++|++.++.|+.+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456789999999999999999999999999999765 445689999999999999999999999999999888
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.27 E-value=3.6e-07 Score=79.40 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
....++|||+|+...++|+-|.++|-+.|.|..+.|..++ .++.| ||||.|.++.+..-|++-+||..+.++.+.+..
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4456899999999999999999999999999999998885 56777 999999999999999999999999999988877
Q ss_pred cc
Q 024258 92 AK 93 (270)
Q Consensus 92 a~ 93 (270)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 54
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=3.3e-06 Score=82.02 Aligned_cols=82 Identities=26% Similarity=0.435 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
-..+++||+|||...+++++.++...||.+....+..|..+|.++||||.+|.+......|+..|||..+.++.+.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc
Q 024258 93 KY 94 (270)
Q Consensus 93 ~~ 94 (270)
..
T Consensus 367 ~~ 368 (500)
T KOG0120|consen 367 IV 368 (500)
T ss_pred hc
Confidence 64
No 89
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.95 E-value=7.8e-06 Score=74.83 Aligned_cols=82 Identities=27% Similarity=0.523 Sum_probs=74.6
Q ss_pred CCcEEE-EcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 14 DTYSLL-VLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 14 ~~~~lf-VgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
...++| ++|+++.+++++|+..|..+|.|..+++..++.++..+||+|+.|.+......++.. +...+.++++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345666 999999999999999999999999999999999999999999999999999999886 788899999999998
Q ss_pred ccCC
Q 024258 93 KYGP 96 (270)
Q Consensus 93 ~~~~ 96 (270)
.+.+
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 7554
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.93 E-value=2.9e-05 Score=72.99 Aligned_cols=75 Identities=31% Similarity=0.479 Sum_probs=68.7
Q ss_pred CcEEEEcCCC-CCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 15 TYSLLVLNIT-FRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 15 ~~~lfVgnLp-~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
.+.|.|.||. +.+|.+.|..+|+-||.|.+|+|..++ +--|.|.|.+...|+.|++.|+|+.+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 6788999996 568999999999999999999999875 3579999999999999999999999999999999987
Q ss_pred c
Q 024258 94 Y 94 (270)
Q Consensus 94 ~ 94 (270)
-
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 3
No 91
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.93 E-value=8.7e-06 Score=75.09 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYG--KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
+...+|||||-|++|++||.+....-| .+.++++..++.+|.+||||.+...+....++-++.|-.++++|+.-.|-.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 456799999999999999999988776 567788888999999999999999999999999999999999998766655
Q ss_pred cc
Q 024258 92 AK 93 (270)
Q Consensus 92 a~ 93 (270)
.+
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 54
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.86 E-value=1.9e-05 Score=73.01 Aligned_cols=90 Identities=26% Similarity=0.333 Sum_probs=80.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVV--------DIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~--------~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Ln 78 (270)
+.........++||-+||..++++++..+|.++|.|. .|.+-+|+.|++.||-|-|.|.+...|+.|+.-++
T Consensus 58 ~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a 137 (351)
T KOG1995|consen 58 SSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA 137 (351)
T ss_pred CccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc
Confidence 3344567788999999999999999999999999875 36788899999999999999999999999999999
Q ss_pred CeeEeccEEEEEEcccCC
Q 024258 79 GRVVDGREITVQFAKYGP 96 (270)
Q Consensus 79 g~~l~Gr~I~V~~a~~~~ 96 (270)
+..+.+..|+|..+....
T Consensus 138 gkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 138 GKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cccccCCCchhhhhhhcc
Confidence 999999999998887554
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.65 E-value=0.00013 Score=54.69 Aligned_cols=68 Identities=31% Similarity=0.448 Sum_probs=47.2
Q ss_pred cEEEEcCCCCCCCHHH----HHHhhccCC-CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 16 YSLLVLNITFRTTADD----LFPLFDKYG-KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 16 ~~lfVgnLp~~~te~d----L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
..|||.|||.+.+... |+.++.-+| .|.+|. .+.|++.|.+.+.|++|.+.|+|-.+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988765 455555665 666652 3689999999999999999999999999999999
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 975
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.65 E-value=0.00014 Score=69.81 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVD-IFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~-v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
.....|-+++||+.++++||.+||+..--+.. +.+..+ ..+++.|=|||.|++.+.+++|+.. |...|..|-|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 45668889999999999999999997744444 455555 4688999999999999999999984 88888889888876
Q ss_pred cc
Q 024258 92 AK 93 (270)
Q Consensus 92 a~ 93 (270)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 64
No 95
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.56 E-value=0.00064 Score=58.08 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=66.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE--ec
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--DG 84 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l--~G 84 (270)
..++.....++|.|.+||.+-+|.||+..+.+.|.++...+.+| |++.|+|...|+.+.|+..|+...+ .|
T Consensus 107 rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seG 179 (241)
T KOG0105|consen 107 RGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEG 179 (241)
T ss_pred cCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcC
Confidence 34667777889999999999999999999999999999988877 5899999999999999999998876 44
Q ss_pred cEEEEEE
Q 024258 85 REITVQF 91 (270)
Q Consensus 85 r~I~V~~ 91 (270)
....+..
T Consensus 180 e~~yirv 186 (241)
T KOG0105|consen 180 ETAYIRV 186 (241)
T ss_pred cEeeEEe
Confidence 4444443
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.55 E-value=7.5e-05 Score=65.37 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=55.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l 82 (270)
..+...++||.||..+++|++|+.+|+.|......+|. .+ . .-..||++|++.+.|..|+..|+|..+
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~-~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-AR-G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cC-C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 34456799999999999999999999999766655552 11 1 234799999999999999999999876
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.54 E-value=0.00032 Score=61.33 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe-ccEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~-Gr~I~V~ 90 (270)
..+...+|+.|||.+++.+.+..+|.+|.....++++..+ ++.|||+|.+...+..|...+++..+. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5667899999999999999999999999999999988764 689999999999999999999999885 7888888
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 765
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.50 E-value=0.00015 Score=63.63 Aligned_cols=75 Identities=31% Similarity=0.554 Sum_probs=65.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
.....+.+++.|++-.+.+.+|...|..+|++....+ .++++||+|+..+++..|++.+++..+.++.|.+.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 3456789999999999999999999999999854443 36799999999999999999999999999999995
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
...
T Consensus 167 ~~~ 169 (216)
T KOG0106|consen 167 KNS 169 (216)
T ss_pred ccC
Confidence 443
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.38 E-value=0.00046 Score=53.99 Aligned_cols=71 Identities=25% Similarity=0.436 Sum_probs=44.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCe-----eEeccEEEE
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-----VVDGREITV 89 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~-----~l~Gr~I~V 89 (270)
++-|.|.|++..++.++|++.|++||.|..|.+.+. -.-|||.|.+.+.|+.|++.+... .+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 356889999999999999999999999999998765 237999999999999998865443 445666555
Q ss_pred EE
Q 024258 90 QF 91 (270)
Q Consensus 90 ~~ 91 (270)
+.
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 100
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.38 E-value=0.00038 Score=64.22 Aligned_cols=80 Identities=18% Similarity=0.477 Sum_probs=63.1
Q ss_pred CCcEEEEcCCCCCCCHHH------HHHhhccCCCeEEEEEcccCCCCC-ccc-E-EEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 14 DTYSLLVLNITFRTTADD------LFPLFDKYGKVVDIFIPRDRRTGD-SRG-F-AFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~d------L~~~F~~~G~I~~v~i~~d~~tg~-skG-~-aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
+..-+||-+||+.+..++ -.++|.+||.|..|.+.+...+.. ..+ + .||+|.+.++|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 456789999999887665 368999999999987765431111 122 2 3999999999999999999999999
Q ss_pred cEEEEEEcc
Q 024258 85 REITVQFAK 93 (270)
Q Consensus 85 r~I~V~~a~ 93 (270)
|.|+..|..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999988753
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.12 E-value=0.0014 Score=65.53 Aligned_cols=77 Identities=26% Similarity=0.420 Sum_probs=66.8
Q ss_pred CCc-EEEEcCCCCCCCHHHHHHhhccCCCeE-EEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 14 DTY-SLLVLNITFRTTADDLFPLFDKYGKVV-DIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 14 ~~~-~lfVgnLp~~~te~dL~~~F~~~G~I~-~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
.++ .|-+.|+|++++-+||-+||..|-.+- +|.+.++ +.|...|-|.|.|++.++|.+|...+++..|.++.+++..
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344 778999999999999999999997654 4555544 7899999999999999999999999999999999988764
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0013 Score=63.59 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=63.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhc-cCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHh
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFD-KYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~ 76 (270)
......+.+|||||+||.-++.++|-.+|. -||.|..+-|-.|++-+.++|-|=|+|++..+.-+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 445556788999999999999999999999 799999999999988899999999999999999999983
No 103
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.06 E-value=0.00028 Score=62.81 Aligned_cols=73 Identities=16% Similarity=0.304 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC--------CCccc----EEEEEEcCHHHHHHHHHhcCCee
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRT--------GDSRG----FAFVRYKYADEAQKAVDRLDGRV 81 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~t--------g~skG----~aFV~F~s~e~A~~Al~~Lng~~ 81 (270)
..--||++++|+.++-..|+++|+.||+|-.|.+.....+ |.+++ -|+|+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988766544 33333 36899999999999999999999
Q ss_pred EeccE
Q 024258 82 VDGRE 86 (270)
Q Consensus 82 l~Gr~ 86 (270)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98875
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.02 E-value=0.0036 Score=58.66 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=72.0
Q ss_pred CCCCCCCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 9 PPDITDTYSLLVLNITF-RTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
|....+++.+.|-+|.. .++-+.|..+|..||.|..|++++.+ .|-|.|++.+....++|+..||+..+.|.+|
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 34556788999999986 56778899999999999999999875 6889999999999999999999999999999
Q ss_pred EEEEccc
Q 024258 88 TVQFAKY 94 (270)
Q Consensus 88 ~V~~a~~ 94 (270)
.|..++.
T Consensus 356 ~v~~SkQ 362 (494)
T KOG1456|consen 356 NVCVSKQ 362 (494)
T ss_pred EEeeccc
Confidence 9998863
No 105
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.98 E-value=0.0019 Score=63.11 Aligned_cols=65 Identities=25% Similarity=0.435 Sum_probs=53.9
Q ss_pred HHHHhhccCCCeEEEEEccc-C--CCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccC
Q 024258 31 DLFPLFDKYGKVVDIFIPRD-R--RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (270)
Q Consensus 31 dL~~~F~~~G~I~~v~i~~d-~--~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~ 95 (270)
+++.-+++||.|.+|.+.++ . .-.-..|--||+|.+.++++.|.++|+|.++.||.+...|....
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 45556678999999999887 2 22345677899999999999999999999999999999987643
No 106
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0015 Score=63.91 Aligned_cols=79 Identities=28% Similarity=0.467 Sum_probs=63.8
Q ss_pred CCCcEEEEcCCCCCCCH------HHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE-ecc
Q 024258 13 TDTYSLLVLNITFRTTA------DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-DGR 85 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te------~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l-~Gr 85 (270)
.-...|+|.|.|.--.. .-|.++|+++|++....++-+..+| .+||.|++|.+..+|+.|++.|||+.+ .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34467889999863322 3467889999999999998886555 999999999999999999999999998 567
Q ss_pred EEEEEEc
Q 024258 86 EITVQFA 92 (270)
Q Consensus 86 ~I~V~~a 92 (270)
+..|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 7777543
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.018 Score=56.01 Aligned_cols=119 Identities=10% Similarity=0.171 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCC---CCCccc---EEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRR---TGDSRG---FAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~---tg~skG---~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
...-+++||||+||++++|+.|...|..||.+. +.+..... ---++| |+|..|+++.+++.-+.+..- ..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 444578999999999999999999999999763 33332111 123566 999999999998887654332 33
Q ss_pred cEEEEEEcccCCchhhh-------cccc-ccCCCCCCCCcceEEEcCCchHHHHHHH
Q 024258 85 REITVQFAKYGPNAERI-------KEGL-LNHSRDRSTGQGVAVLGEDTEMITEIEI 133 (270)
Q Consensus 85 r~I~V~~a~~~~~~~~~-------~~~~-~~~~~~~~~~rg~~~v~~~~~~~~~~~~ 133 (270)
....++.+.+..+.... .... .......=..+...|++......++.++
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eL 387 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEEL 387 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHH
Confidence 33333333321111100 0011 1112233345677888888555555443
No 108
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.92 E-value=0.0047 Score=57.29 Aligned_cols=82 Identities=22% Similarity=0.429 Sum_probs=66.4
Q ss_pred CCCCCCCcEEEEcCCCC----CCC-------HHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 024258 9 PPDITDTYSLLVLNITF----RTT-------ADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~----~~t-------e~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~L 77 (270)
+...+..++|.+.|+-- ..+ +++|++-..+||.|.+|.+. ...+.|.+-|.|.+.++|+.|++.|
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHh
Confidence 44556778999999832 233 35667778899999999874 2346899999999999999999999
Q ss_pred CCeeEeccEEEEEEccc
Q 024258 78 DGRVVDGREITVQFAKY 94 (270)
Q Consensus 78 ng~~l~Gr~I~V~~a~~ 94 (270)
+|..++||.|.-+....
T Consensus 335 ~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 335 DGRWFDGRQLTASIWDG 351 (382)
T ss_pred cCeeecceEEEEEEeCC
Confidence 99999999999887763
No 109
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.82 E-value=0.003 Score=43.24 Aligned_cols=52 Identities=25% Similarity=0.557 Sum_probs=41.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHH
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al 74 (270)
+.|-|.|.+.+..+. +..+|.+||+|.++.+.. ...+.|+.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 457788888777654 555889999999988852 2458999999999999985
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.69 E-value=0.0021 Score=60.40 Aligned_cols=83 Identities=14% Similarity=0.304 Sum_probs=69.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCC-eEE--EEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGK-VVD--IFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~-I~~--v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
+.+....|-.++||++.+.++|-.||..|.. |.. +.+..+ ..|+..|-|||+|.+.+.|.+|..+.+.+..+.|.|
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 3344556889999999999999999998863 333 677776 579999999999999999999999888888889999
Q ss_pred EEEEccc
Q 024258 88 TVQFAKY 94 (270)
Q Consensus 88 ~V~~a~~ 94 (270)
.|-.+..
T Consensus 355 Evfp~S~ 361 (508)
T KOG1365|consen 355 EVFPCSV 361 (508)
T ss_pred EEeeccH
Confidence 9887763
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.67 E-value=0.00012 Score=74.25 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=62.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
.++.+++||.||+..+.+.+|...|..+|.+..+++.....+++.||+||++|.+++++.+|+.. +...+.|
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~g 735 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFG 735 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh-hhhhhhh
Confidence 35567899999999999999999999999998888776677899999999999999999999984 4444444
No 112
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.50 E-value=0.0018 Score=61.44 Aligned_cols=78 Identities=22% Similarity=0.249 Sum_probs=60.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCe-eEeccEEEEEEccc
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-VVDGREITVQFAKY 94 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~-~l~Gr~I~V~~a~~ 94 (270)
.++|++||.+..+.+|++.+|...---.+-.++. -.||+||++.+...+.+|++.++|. ++.|+++.+..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997541101111111 2589999999999999999999997 58999999999876
Q ss_pred CCchh
Q 024258 95 GPNAE 99 (270)
Q Consensus 95 ~~~~~ 99 (270)
+..+.
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 55443
No 113
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.35 E-value=0.0085 Score=56.78 Aligned_cols=78 Identities=24% Similarity=0.302 Sum_probs=64.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec-cEEEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG-REITVQF 91 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G-r~I~V~~ 91 (270)
+++.++...|+|.+++|+++++.|.+-|...+... .-++.+-++++.+++.|+|-.|+-.+|.+.+.+ ..++|++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafk----ff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFK----FFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeee----ecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 45678999999999999999999999886644422 123446699999999999999999999999854 5899999
Q ss_pred ccc
Q 024258 92 AKY 94 (270)
Q Consensus 92 a~~ 94 (270)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 873
No 114
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.21 E-value=0.024 Score=43.97 Aligned_cols=77 Identities=16% Similarity=0.345 Sum_probs=51.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEE-EcccC------CCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc-E
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIF-IPRDR------RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR-E 86 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~-i~~d~------~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr-~ 86 (270)
.+-|.|=|.|+.. ...+-+.|++||.|.+.. +.++. .......+-.+.|.++.+|++||. -||..+.|. .
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 4567777888884 466778899999997764 11110 011235689999999999999998 599999875 4
Q ss_pred EEEEEcc
Q 024258 87 ITVQFAK 93 (270)
Q Consensus 87 I~V~~a~ 93 (270)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5577764
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.17 E-value=0.0023 Score=65.18 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEccc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~ 94 (270)
...+||.|.|+..|.++++.+++.+|.+.+.+++.. ..|+++|.+||.|.++.++.++....+...+.-+.+.|..+++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 467999999999999999999999999999998777 4799999999999999999999988888777777777777765
No 116
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.11 E-value=0.0053 Score=60.50 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=65.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhcc-CCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE---e
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDK-YGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV---D 83 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~-~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l---~ 83 (270)
.|.....++.|||.||-.-.|.-+|+.++.+ .|.|.+. +.|+ -|..|||.|.+.++|-+...+|||..+ +
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 4556677899999999999999999999994 5556555 3332 367899999999999999999999998 6
Q ss_pred ccEEEEEEcc
Q 024258 84 GREITVQFAK 93 (270)
Q Consensus 84 Gr~I~V~~a~ 93 (270)
.+.|.+.|..
T Consensus 511 PK~L~adf~~ 520 (718)
T KOG2416|consen 511 PKHLIADFVR 520 (718)
T ss_pred CceeEeeecc
Confidence 6888888864
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.95 E-value=0.043 Score=51.63 Aligned_cols=85 Identities=27% Similarity=0.373 Sum_probs=65.4
Q ss_pred CCCCCCCCCcEEEEc--CCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe-
Q 024258 7 SGPPDITDTYSLLVL--NITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD- 83 (270)
Q Consensus 7 s~~~~~~~~~~lfVg--nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~- 83 (270)
.++....+...|.+. |--+.+|-+-|..+....|+|.+|.|.+. + --.|.|+|++.+.|++|.++|||..|.
T Consensus 112 ~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 112 PGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred CCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccc
Confidence 334444445455544 44467899999999999999999988654 2 236999999999999999999999873
Q ss_pred c-cEEEEEEcccCC
Q 024258 84 G-REITVQFAKYGP 96 (270)
Q Consensus 84 G-r~I~V~~a~~~~ 96 (270)
| ..|+|+++++.+
T Consensus 187 GCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 187 GCCTLKIEYAKPTR 200 (494)
T ss_pred cceeEEEEecCcce
Confidence 3 678999998643
No 118
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.92 E-value=0.038 Score=41.41 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=43.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng 79 (270)
.+.+..-.+++ .|..+...||.++|+.||.| .|.++.|. .|||...+.+.+..++..+..
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34445556665 99999999999999999987 56666653 799999999999999887654
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.84 E-value=0.0091 Score=61.33 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=68.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec--cEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REIT 88 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G--r~I~ 88 (270)
.....+.+|+++|..++....+...|..||.|..|.+-.. .-|+|+.|.+...++.|++.|.|..+++ ++++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4556789999999999999999999999999999877432 4599999999999999999999999965 7799
Q ss_pred EEEccc
Q 024258 89 VQFAKY 94 (270)
Q Consensus 89 V~~a~~ 94 (270)
|.++..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 998874
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.78 E-value=0.0092 Score=59.87 Aligned_cols=81 Identities=21% Similarity=0.039 Sum_probs=66.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVD-IFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~-v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
...-+..|||..||..+++.++-++|+..-.|++ |.+.+.+ +++.++-|||.|..++.+..|...-+.+.+..+.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 3445778999999999999999999998777776 6666664 7888999999999998888888766666778888888
Q ss_pred EEc
Q 024258 90 QFA 92 (270)
Q Consensus 90 ~~a 92 (270)
.-.
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 754
No 121
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.71 E-value=0.032 Score=46.10 Aligned_cols=55 Identities=29% Similarity=0.520 Sum_probs=46.0
Q ss_pred HHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEccc
Q 024258 31 DLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (270)
Q Consensus 31 dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~ 94 (270)
+|-+.|..||++.-+++..+ .-+|+|.+-++|-+|+. ++|.++.|+.|+|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 67788899999988888755 58999999999999998 899999999999998764
No 122
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.56 E-value=0.033 Score=47.56 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=51.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcc-CCCe---EEEE--EcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec-
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDK-YGKV---VDIF--IPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG- 84 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~-~G~I---~~v~--i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G- 84 (270)
.....+|.|++||+.++|+++.+.++. ++.- ..+. ..........-..|||.|.+.+++..-.+.++|+.+.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999997776 5554 3333 21111112234569999999999999999999998743
Q ss_pred ----cEEEEEEccc
Q 024258 85 ----REITVQFAKY 94 (270)
Q Consensus 85 ----r~I~V~~a~~ 94 (270)
..-.|++|-.
T Consensus 84 kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 84 KGNEYPAVVEFAPY 97 (176)
T ss_dssp TS-EEEEEEEE-SS
T ss_pred CCCCcceeEEEcch
Confidence 2345666654
No 123
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.49 E-value=0.017 Score=54.98 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=57.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEccc---CCCC--C--------cccEEEEEEcCHHHHHHHHHh
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRD---RRTG--D--------SRGFAFVRYKYADEAQKAVDR 76 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d---~~tg--~--------skG~aFV~F~s~e~A~~Al~~ 76 (270)
.+.-++++|.+-|||.+-.-+.|.++|+.+|.|+.|+|... +.+. . .+-+|+|+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34458899999999999888999999999999999998765 3322 1 255799999999999999986
Q ss_pred cCC
Q 024258 77 LDG 79 (270)
Q Consensus 77 Lng 79 (270)
++.
T Consensus 306 ~~~ 308 (484)
T KOG1855|consen 306 LNP 308 (484)
T ss_pred hch
Confidence 644
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.32 E-value=0.021 Score=53.85 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=56.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhccC----CCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 17 SLLVLNITFRTTADDLFPLFDKY----GKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 17 ~lfVgnLp~~~te~dL~~~F~~~----G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
-|-.++||+++++.++.+||..- |..+.+.+++. .+|+..|=|||.|..+++|+.|+.+ |...++-|.|.+-.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 45567999999999999999732 34456666654 4799999999999999999999985 666666666655433
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.05 E-value=0.12 Score=36.64 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=45.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccC---CCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKY---GKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~---G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~L 77 (270)
..+|+|.|+. +++-++++.+|..| .....|.++-|. .|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999985 47778999999988 235688888884 5889999999999999764
No 126
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.00 E-value=0.017 Score=51.66 Aligned_cols=65 Identities=22% Similarity=0.488 Sum_probs=50.8
Q ss_pred HHHHhhc-cCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccCC
Q 024258 31 DLFPLFD-KYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGP 96 (270)
Q Consensus 31 dL~~~F~-~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~~ 96 (270)
++...|+ +||+|+++.+-.+ ..-.-+|=.||.|..+++|++|++.||+.-+.|++|..++..-..
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 3333344 8999998855333 234567889999999999999999999999999999998876433
No 127
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.57 E-value=0.093 Score=47.99 Aligned_cols=64 Identities=30% Similarity=0.425 Sum_probs=52.4
Q ss_pred HHHHHhhccCCCeEEEEEcccCCCCCccc-EEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 30 DDLFPLFDKYGKVVDIFIPRDRRTGDSRG-FAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 30 ~dL~~~F~~~G~I~~v~i~~d~~tg~skG-~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+++++-+.+||.|..|.|.-.+..-.... --||+|+..++|-+|+-.|||..++||.++-.+.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 56778889999999987776654333332 47999999999999999999999999999887765
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.97 E-value=0.02 Score=52.96 Aligned_cols=79 Identities=23% Similarity=0.502 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCCCHHH-H--HHhhccCCCeEEEEEcccCC----CCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 14 DTYSLLVLNITFRTTADD-L--FPLFDKYGKVVDIFIPRDRR----TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~d-L--~~~F~~~G~I~~v~i~~d~~----tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
...-+||-+|+.....++ | .++|.+||.|..|.+.+++. .+.+. -+||+|...++|..||...+|..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhh
Confidence 345688889987765544 3 37899999999998888762 12222 3799999999999999999999999998
Q ss_pred EEEEEcc
Q 024258 87 ITVQFAK 93 (270)
Q Consensus 87 I~V~~a~ 93 (270)
++..+..
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 7776654
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.94 E-value=0.098 Score=49.52 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=63.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC---CCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRT---GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 17 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~t---g~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
.|-|.||.++++.++++.+|.-.|+|.++.+..+... ....-.|||.|.+...+..|-. |..+.+-++-|.|-.+-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 7899999999999999999999999999988754322 2345589999999999998876 88888888887776654
Q ss_pred c
Q 024258 94 Y 94 (270)
Q Consensus 94 ~ 94 (270)
.
T Consensus 88 ~ 88 (479)
T KOG4676|consen 88 D 88 (479)
T ss_pred C
Confidence 3
No 130
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.91 E-value=0.078 Score=48.69 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCC-eeEeccEEEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG-RVVDGREITVQF 91 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng-~~l~Gr~I~V~~ 91 (270)
...++.|++++.+.+.+.+...++.++|............+..++|++++.|...+.+..++. +.+ ....++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCcc
Confidence 457899999999999999999999999998888888777889999999999999999999998 455 455666655544
Q ss_pred cc
Q 024258 92 AK 93 (270)
Q Consensus 92 a~ 93 (270)
..
T Consensus 165 ~~ 166 (285)
T KOG4210|consen 165 NT 166 (285)
T ss_pred cc
Confidence 43
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.76 E-value=0.052 Score=48.65 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=61.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE----eccEEEEEE
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV----DGREITVQF 91 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l----~Gr~I~V~~ 91 (270)
..|||.||+..++.+.+++.|+.||+|....+.-| ..+++.+-++|.|.+.-.+.+|+...+-.-+ .++..-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 67999999999999999999999999988766666 5688889999999999999999886643333 445555544
Q ss_pred c
Q 024258 92 A 92 (270)
Q Consensus 92 a 92 (270)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 132
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.84 E-value=0.99 Score=35.59 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=51.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYG-KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
+.......+.+...|+.++-++|..+.+.+- .|..+++++|. ..++=-+.+.|.+.+.|+.-.+.+||+.++.
T Consensus 8 ~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 8 PDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3334444455555566667677776666553 56788998873 2355578999999999999999999998753
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.74 E-value=0.025 Score=58.23 Aligned_cols=81 Identities=22% Similarity=0.321 Sum_probs=66.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
....+++||+|||+..+++.+++..|..+|.+.+|.|..-+ -+.---|+||.|.+...+-.|+..+.+..|....+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34457899999999999999999999999999999886653 33444599999999999999999899988866566665
Q ss_pred Ec
Q 024258 91 FA 92 (270)
Q Consensus 91 ~a 92 (270)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 55
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.04 E-value=0.82 Score=33.10 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHhhccCC-----CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 24 TFRTTADDLFPLFDKYG-----KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 24 p~~~te~dL~~~F~~~G-----~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
-..++..+|-.++...+ .|-.|++..+ |+||+-.. +.++.+++.|++..+.|++++|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34677888888887664 4557777544 89999875 4788899999999999999999864
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.49 E-value=0.72 Score=39.68 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=45.4
Q ss_pred CHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcC--CeeEeccEEEEEEccc
Q 024258 28 TADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GRVVDGREITVQFAKY 94 (270)
Q Consensus 28 te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Ln--g~~l~Gr~I~V~~a~~ 94 (270)
..+.|+++|..|+.+......+. -+-..|.|.+.+.|.+|...|+ +..+.|..+++.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999888776654 3468899999999999999999 8999999999999864
No 136
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.92 E-value=0.28 Score=47.57 Aligned_cols=75 Identities=27% Similarity=0.365 Sum_probs=58.2
Q ss_pred CcEEEEcCCCCCC-CHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 15 TYSLLVLNITFRT-TADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 15 ~~~lfVgnLp~~~-te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
.+.+-+.-.|+.. +-.+|...|.+||+|..|.+-.. --.|.|+|.+..+|-.|-. .++..|+||.|+|.|.+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3444444445544 45789999999999999988544 2368999999999977765 69999999999999998
Q ss_pred cCC
Q 024258 94 YGP 96 (270)
Q Consensus 94 ~~~ 96 (270)
+.+
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 643
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=88.56 E-value=0.66 Score=45.75 Aligned_cols=58 Identities=14% Similarity=0.318 Sum_probs=45.2
Q ss_pred CCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe----ccEEEEEEcccCC
Q 024258 39 YGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD----GREITVQFAKYGP 96 (270)
Q Consensus 39 ~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~----Gr~I~V~~a~~~~ 96 (270)
.|.-..+.++.|-.+..+.|||||.|.+++.+..+.+++||+.+. .+...+.|++-+.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 344455667777777889999999999999999999999999862 3556677776433
No 138
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.77 E-value=0.41 Score=48.07 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=63.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
....+..++||+|+...+.++-++.+...+|.|.+++... |||..|........|+..++...++|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3445678999999999999999999999999998876542 9999999999999999988888888888776
Q ss_pred EEc
Q 024258 90 QFA 92 (270)
Q Consensus 90 ~~a 92 (270)
...
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 653
No 139
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.69 E-value=3 Score=34.57 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=54.7
Q ss_pred CCCCcEEEEcCCCCCCCH-HH---HHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 12 ITDTYSLLVLNITFRTTA-DD---LFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te-~d---L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
..+-.+|.|+=|..++.- +| +...++.||+|.++.+- | +..|.|.|.+..+|-.|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 445568888877666532 33 44556789999998762 2 34799999999999999998776 6677888
Q ss_pred EEEEcc
Q 024258 88 TVQFAK 93 (270)
Q Consensus 88 ~V~~a~ 93 (270)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888754
No 140
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.11 E-value=3.1 Score=38.41 Aligned_cols=67 Identities=27% Similarity=0.444 Sum_probs=48.7
Q ss_pred EcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc-EEEEEEccc
Q 024258 20 VLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR-EITVQFAKY 94 (270)
Q Consensus 20 VgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr-~I~V~~a~~ 94 (270)
|=+.|+.-. .-+-..|++||+|.+.... +.-.|-+|.|.+..+|++||. .||..|+|. .|-|+.+..
T Consensus 202 VfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 202 VFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred EeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 335555443 4566789999999876543 334599999999999999998 599999775 455666553
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=81.56 E-value=0.81 Score=47.34 Aligned_cols=71 Identities=31% Similarity=0.403 Sum_probs=59.2
Q ss_pred EEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE--eccEEEEEEcccC
Q 024258 19 LVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--DGREITVQFAKYG 95 (270)
Q Consensus 19 fVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l--~Gr~I~V~~a~~~ 95 (270)
++-|.+-..+-..|..+|++||.+.+.+..++- ..|.|+|.+.+.|-.|+++++|.++ -|-+.+|.+++.-
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 344455567778899999999999999887773 4799999999999999999999986 6788899888743
No 142
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.58 E-value=12 Score=26.70 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=42.3
Q ss_pred CCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 26 RTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 26 ~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
.++-++++.-+..|+ ..+|. .|+ .| =||.|.+.++|+++.+..+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 457789999999995 34444 332 22 489999999999999999999988877654
No 143
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=78.58 E-value=3.2 Score=41.25 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=53.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcc--CCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCe--eEeccEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDK--YGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR--VVDGREIT 88 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~--~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~--~l~Gr~I~ 88 (270)
.+.|-+.++-+|..+-+|+++.+|+. +-++.+|.+-.+. -=||+|++..+|+.|.+.|... +|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 45677889999999999999999975 6677888775442 2599999999999998755442 35666654
No 144
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.11 E-value=9.3 Score=35.16 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=38.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEcccCCCCCcccEEEEEEcCH
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKV-VDIFIPRDRRTGDSRGFAFVRYKYA 67 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I-~~v~i~~d~~tg~skG~aFV~F~s~ 67 (270)
+..-..-+|++||+.++.-.||+..+.+-|.+ .++.+. -+.|-||..|.+.
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 33445679999999999999999999988754 355442 2467899999764
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.99 E-value=8.1 Score=37.56 Aligned_cols=70 Identities=19% Similarity=0.358 Sum_probs=57.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYG-KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
.+++.|+|=.+|-.++-.||-.|...+- .|.++++++|. --++=...+.|++.++|..-.+.+||..+..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3388999999999999999999988664 67899999863 2233357999999999999999999998754
No 146
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=72.72 E-value=7.8 Score=36.25 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=27.8
Q ss_pred CCCcceEEEcCC--chHHHHHHHH----hCCcEEEeccccccccC
Q 024258 113 STGQGVAVLGED--TEMITEIEII----EGGVTVEAGIGTNVTDT 151 (270)
Q Consensus 113 ~~~rg~~~v~~~--~~~~~~~~~~----~~G~~~~v~~~~~~~~~ 151 (270)
+.++||+|+.++ .++.+++..+ ..|+.++++.++.+-..
T Consensus 133 RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n 177 (376)
T KOG0125|consen 133 RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHN 177 (376)
T ss_pred CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhcc
Confidence 356788888877 5555555555 88999999998876333
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=71.19 E-value=4.6 Score=36.52 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCCCCCHHH-H--HHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 14 DTYSLLVLNITFRTTADD-L--FPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~d-L--~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
.-...|++++-..+..+- + ...|+.|-.....++.++. -+.-++++|+.|.......++-..-+++++.-+.++..
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 345667777766665554 3 6778877777777777763 56778999999998887777776656666666655543
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=64.68 E-value=0.75 Score=43.73 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=53.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr 85 (270)
++++|++|+..+...++-+.|..+|++....+. .+...-||-++|....+...|++ ++|.++.-+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~q 216 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQ 216 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhh
Confidence 679999999999999999999999999877663 34456688899999988888988 688776533
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=64.28 E-value=1.6 Score=38.62 Aligned_cols=72 Identities=26% Similarity=0.415 Sum_probs=59.1
Q ss_pred CCcEEEEcC----CCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 14 DTYSLLVLN----ITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 14 ~~~~lfVgn----Lp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
...+++.|+ |...++++.++..|+..|.+..+++.++. .|+++.++|+++.-....-.++..+.+....-++
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 456788888 88899999999999999999999998885 4899999999998877777787766666543333
No 150
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.75 E-value=25 Score=33.89 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=46.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHH
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGK-VVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~-I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~ 75 (270)
+..=.+.|-|-++|....-+||-..|+.|+. -.+|+++-|. .+|-.|++...|..|+.
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 3334567889999998888889999999964 4677777664 79999999999999997
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=59.93 E-value=0.5 Score=45.36 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=63.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEE-cccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFI-PRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i-~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.++++-|+|+|+...++-+..+...||.+.+|.. ..+.. .-..-|+|.+.+.++.|+..++|..+.+..+++.|-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 4677999999999999999999999999998854 33322 223347889999999999999999999999999886
Q ss_pred c
Q 024258 93 K 93 (270)
Q Consensus 93 ~ 93 (270)
.
T Consensus 155 P 155 (584)
T KOG2193|consen 155 P 155 (584)
T ss_pred c
Confidence 4
No 152
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=49.22 E-value=39 Score=28.41 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=47.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHH
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~ 75 (270)
.........++++++..++..++...|..+|.+....+...........+.++.+...........
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 345567889999999999999999999999999877776655444455555555554444444443
No 153
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=47.98 E-value=33 Score=24.50 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=43.7
Q ss_pred HHHHHhhccCC-CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 30 DDLFPLFDKYG-KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 30 ~dL~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+++++-|...| .+.++.-+..+.++.....-||+.....+ ..+.++=..+.+.+++|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCC
Confidence 45677777777 67888888887777777888988876544 233355566788888888765
No 154
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=40.53 E-value=41 Score=24.31 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=42.3
Q ss_pred HHHHHhhccCC-CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 30 DDLFPLFDKYG-KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 30 ~dL~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+++++-|...| ++..+.-+..+.++.+...-||+.....+... .|+=..+.|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35777788888 67888888887777777778888765432222 344455678888888755
No 155
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=39.89 E-value=25 Score=25.30 Aligned_cols=27 Identities=33% Similarity=0.609 Sum_probs=22.1
Q ss_pred cCCCCCCchhHHHHhhHhhhhhhhhhh
Q 024258 199 IAPVPAGVFPLARILLLGVRVLMDAVV 225 (270)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (270)
.+|+-+.++|.|++.+|++-.++-|..
T Consensus 10 tsPVNpAvfPhLttvLl~iG~fftAwF 36 (79)
T KOG4452|consen 10 TSPVNPAVFPHLTTVLLGIGLFFTAWF 36 (79)
T ss_pred cCCCChhHhHHHHHHHHHHHHHHHHHH
Confidence 467788999999999998887776643
No 156
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=39.87 E-value=26 Score=32.20 Aligned_cols=68 Identities=22% Similarity=0.444 Sum_probs=43.4
Q ss_pred CcEEEEcCCCCC------------CCHHHHHHhhccCCCeEEEEEcc-----cCCCCCccc-----EE---------EEE
Q 024258 15 TYSLLVLNITFR------------TTADDLFPLFDKYGKVVDIFIPR-----DRRTGDSRG-----FA---------FVR 63 (270)
Q Consensus 15 ~~~lfVgnLp~~------------~te~dL~~~F~~~G~I~~v~i~~-----d~~tg~skG-----~a---------FV~ 63 (270)
.-+||+.++|-. -+|+.|+..|..||.|..|.|+. ...+|+..| |+ ||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 347888888753 36778999999999999886642 223555433 33 233
Q ss_pred EcCHHHHHHHHHhcCCeeE
Q 024258 64 YKYADEAQKAVDRLDGRVV 82 (270)
Q Consensus 64 F~s~e~A~~Al~~Lng~~l 82 (270)
|........|+.+|.|.++
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 4434444556667777654
No 157
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.14 E-value=1.4e+02 Score=30.23 Aligned_cols=80 Identities=25% Similarity=0.447 Sum_probs=59.1
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHhhccC----CCeEEEEEcccC----------CCCC---------------------
Q 024258 12 ITDTYSLLVLNITF-RTTADDLFPLFDKY----GKVVDIFIPRDR----------RTGD--------------------- 55 (270)
Q Consensus 12 ~~~~~~lfVgnLp~-~~te~dL~~~F~~~----G~I~~v~i~~d~----------~tg~--------------------- 55 (270)
...+++|-|-|+.| .+...||..+|+.| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999998 46888999998876 588888765311 1121
Q ss_pred ----------------cccEEEEEEcCHHHHHHHHHhcCCeeEec--cEEEEEE
Q 024258 56 ----------------SRGFAFVRYKYADEAQKAVDRLDGRVVDG--REITVQF 91 (270)
Q Consensus 56 ----------------skG~aFV~F~s~e~A~~Al~~Lng~~l~G--r~I~V~~ 91 (270)
..=||.|+|.+.+.|....+..+|.++.. ..+-+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 01278999999999999999999999854 4444444
No 158
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=33.06 E-value=21 Score=25.82 Aligned_cols=14 Identities=57% Similarity=0.861 Sum_probs=9.4
Q ss_pred hhhhhhcCCCCCCC
Q 024258 257 DFCVLLGNRGRHLK 270 (270)
Q Consensus 257 ~~~~~~~~~~~~~~ 270 (270)
=|++|+||.-+|+|
T Consensus 48 ~fn~ligN~D~H~k 61 (79)
T PF07804_consen 48 VFNYLIGNTDRHLK 61 (79)
T ss_dssp HHHHHCTBS---CC
T ss_pred HHHHHHcCCcCCcC
Confidence 37889999999987
No 159
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.62 E-value=41 Score=28.96 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=50.4
Q ss_pred EEEEcCCCCCCC-----HHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc-EEEEE
Q 024258 17 SLLVLNITFRTT-----ADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR-EITVQ 90 (270)
Q Consensus 17 ~lfVgnLp~~~t-----e~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr-~I~V~ 90 (270)
.+++-+++..+. ....+++|.+|.+....++.+. .++--|.|.+++.+..|.-.+++..+.|+ .++.-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 455556655432 2345677777766555555543 45667899999999999999999999888 77777
Q ss_pred Eccc
Q 024258 91 FAKY 94 (270)
Q Consensus 91 ~a~~ 94 (270)
++.+
T Consensus 86 faQ~ 89 (193)
T KOG4019|consen 86 FAQP 89 (193)
T ss_pred EccC
Confidence 7663
No 160
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=30.49 E-value=26 Score=33.72 Aligned_cols=61 Identities=25% Similarity=0.225 Sum_probs=50.4
Q ss_pred CcEEEEcCCCCCCCHH--------HHHHhhcc--CCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHH
Q 024258 15 TYSLLVLNITFRTTAD--------DLFPLFDK--YGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~--------dL~~~F~~--~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~ 75 (270)
.+.+|+.+.......+ ++...|.. .+.+..+...++.....++|.-|++|...+.+++...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567787777665554 89999998 6788888888887788899999999999999999873
No 161
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=30.09 E-value=41 Score=26.62 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEc-CHHHHHHHHH
Q 024258 27 TTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYK-YADEAQKAVD 75 (270)
Q Consensus 27 ~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~-s~e~A~~Al~ 75 (270)
.+.++|++.|+.|..++ ++...++ ..+.|++.|+|. +-.--..|++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 35578999999998764 5555553 367899999997 4445555554
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=29.93 E-value=90 Score=28.91 Aligned_cols=80 Identities=16% Similarity=0.295 Sum_probs=56.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCC-------CCCcccEEEEEEcCHHHHHH----HHHhcCCe--
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRR-------TGDSRGFAFVRYKYADEAQK----AVDRLDGR-- 80 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~-------tg~skG~aFV~F~s~e~A~~----Al~~Lng~-- 80 (270)
..|.|...|+..+++-..+-.-|-+||+|++|.++.+.. ..+......+.|-+.+.+-. .++.|...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 467788899999998888888889999999999987751 12334567888888776543 33344433
Q ss_pred eEeccEEEEEEcc
Q 024258 81 VVDGREITVQFAK 93 (270)
Q Consensus 81 ~l~Gr~I~V~~a~ 93 (270)
.++...+.+.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3566777776654
No 163
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=29.06 E-value=8.1 Score=38.50 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=54.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
...|++|+.|++++++-.+|+..++.+--...+.+..+....+..-+++|.|.---....|+.+||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 346889999999999999999999988666655544332233455678999987777777888888876643
No 164
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=29.04 E-value=1.1e+02 Score=24.75 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=23.9
Q ss_pred CCCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVT 149 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~ 149 (270)
.++.+|++|+.|.+....+.... ++|+.+.+..+..+.
T Consensus 72 tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 72 TGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115 (144)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCC
Confidence 45678999999994444333332 567777777665443
No 165
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=28.63 E-value=1e+02 Score=31.54 Aligned_cols=68 Identities=4% Similarity=0.028 Sum_probs=47.6
Q ss_pred EEEEc-CCCCCCCHHHHHHhhccCCCe-----EEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 17 SLLVL-NITFRTTADDLFPLFDKYGKV-----VDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 17 ~lfVg-nLp~~~te~dL~~~F~~~G~I-----~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
++||. +=...++..+|-.++..-+.| -.|+|.. .|.||+... +.+...++.|++..+.|+++.|+
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEEE
Confidence 34443 234466777777777654443 3455543 389999864 56888899999999999999999
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
.+.
T Consensus 559 ~~~ 561 (629)
T PRK11634 559 LLG 561 (629)
T ss_pred ECC
Confidence 875
No 166
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.86 E-value=62 Score=28.88 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCCCCcceEEEcCC--chHHHHHHHH----hCCcEEEeccccccccCCCC
Q 024258 111 DRSTGQGVAVLGED--TEMITEIEII----EGGVTVEAGIGTNVTDTVGG 154 (270)
Q Consensus 111 ~~~~~rg~~~v~~~--~~~~~~~~~~----~~G~~~~v~~~~~~~~~~gG 154 (270)
.+.+.|||+|+.|+ .++..+++.+ +-|+.++++.+++....-+.
T Consensus 47 esqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kikegs 96 (298)
T KOG0111|consen 47 ESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKEGS 96 (298)
T ss_pred hcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccCCC
Confidence 34567888888888 6666666555 77999999988876555443
No 167
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.98 E-value=17 Score=35.34 Aligned_cols=79 Identities=4% Similarity=-0.173 Sum_probs=59.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEccc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~ 94 (270)
+.+.|+..++-..+++++.-.|..||.|..+...+.-..+-.+-.+|+.-.. .++..+++.+.-..+.|..+++..+..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3456778889999999999999999999888776665556667788887654 356666666666667788888877653
No 168
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=24.94 E-value=1.4e+02 Score=21.05 Aligned_cols=18 Identities=11% Similarity=0.591 Sum_probs=14.9
Q ss_pred HHHHHhhccCCCeEEEEE
Q 024258 30 DDLFPLFDKYGKVVDIFI 47 (270)
Q Consensus 30 ~dL~~~F~~~G~I~~v~i 47 (270)
.+|+++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999876654
No 169
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.68 E-value=2.1e+02 Score=20.93 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=26.1
Q ss_pred CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe
Q 024258 41 KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (270)
Q Consensus 41 ~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~ 83 (270)
.|.++-... ..+||-|||=.++.++..|++.+.+....
T Consensus 33 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 33 NIYSIFAPD-----SLKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp ---EEEE-T-----TSTSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred ceEEEEEeC-----CCceEEEEEeCCHHHHHHHHhcccceeec
Confidence 455555432 36999999999999999999887765543
No 170
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.58 E-value=1.2e+02 Score=28.90 Aligned_cols=69 Identities=14% Similarity=0.315 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEcccCCC--CCcccEEEEEEcCHHHHHHHHHhcCCeeE
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGK-VVDIFIPRDRRT--GDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~-I~~v~i~~d~~t--g~skG~aFV~F~s~e~A~~Al~~Lng~~l 82 (270)
.-+++.|.+||+..++.++.+....+-. +....+.....+ ..-.+.+||.|...++...-.+.++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3468889999999999998887776532 111222211111 12256789999999999998889999886
No 171
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=22.71 E-value=1.3e+02 Score=22.61 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=30.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEc
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYK 65 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~ 65 (270)
.-+||||++..+.|.-.+.+.+..+.-.-+-+..+ ....||.|-.+-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 35999999999988766666655443333333333 227899998773
No 172
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=22.34 E-value=91 Score=28.42 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=41.6
Q ss_pred hhhhhhccccccccCCCcccc--ccccchHHHHHHhhhhhhhhcCCCCCC
Q 024258 222 DAVVVSGLQLLEVLPPEVDMV--IPAAIPREIQMLMTDFCVLLGNRGRHL 269 (270)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (270)
++..--+++.|++.++.+.+| ||..-..+.+..+.++|-.|-+.+|.|
T Consensus 47 ~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~~~ril 96 (268)
T TIGR01743 47 ETFEKFGIGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSEPERIL 96 (268)
T ss_pred HHHHhcCCceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 344556788899999999987 799999999999999999999999876
No 173
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.81 E-value=75 Score=29.01 Aligned_cols=32 Identities=28% Similarity=0.237 Sum_probs=23.3
Q ss_pred EEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 60 AFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 60 aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
|||+|++.++|+.|++.+.... ++.++++.|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999998544433 3445666654
Done!